Query 010043
Match_columns 519
No_of_seqs 191 out of 1887
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 20:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02286 arginine-tRNA ligase 100.0 8E-114 2E-118 942.0 53.6 479 35-515 23-503 (576)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 1E-112 3E-117 921.6 50.0 486 10-515 2-501 (577)
3 PRK12451 arginyl-tRNA syntheta 100.0 6E-108 1E-112 895.1 51.0 480 11-514 3-487 (562)
4 KOG4426 Arginyl-tRNA synthetas 100.0 1E-106 2E-111 811.6 45.1 506 3-515 65-576 (656)
5 TIGR00456 argS arginyl-tRNA sy 100.0 5.2E-99 1E-103 827.1 51.8 479 12-514 2-489 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 4.4E-89 9.5E-94 740.6 46.0 423 8-515 2-432 (507)
7 KOG1195 Arginyl-tRNA synthetas 100.0 1.8E-82 3.9E-87 650.5 33.3 451 41-515 33-492 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 1.2E-77 2.5E-82 623.4 26.5 340 110-460 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 2.2E-54 4.7E-59 419.3 24.2 209 129-397 1-212 (212)
10 PLN02946 cysteine-tRNA ligase 100.0 4E-31 8.8E-36 284.8 22.3 270 126-488 77-390 (557)
11 PRK00260 cysS cysteinyl-tRNA s 100.0 1.3E-28 2.9E-33 264.5 26.3 251 126-466 20-312 (463)
12 TIGR00435 cysS cysteinyl-tRNA 100.0 2.4E-28 5.2E-33 262.1 26.9 265 126-483 18-327 (465)
13 COG0215 CysS Cysteinyl-tRNA sy 100.0 4.8E-29 1E-33 260.0 20.4 256 121-466 15-314 (464)
14 PRK14534 cysS cysteinyl-tRNA s 100.0 6.9E-28 1.5E-32 256.2 25.8 261 128-467 20-327 (481)
15 PRK14536 cysS cysteinyl-tRNA s 100.0 6.6E-28 1.4E-32 257.5 25.3 276 126-483 20-342 (490)
16 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.5E-27 3.1E-32 264.1 24.4 273 126-489 57-383 (651)
17 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.7E-27 3.7E-32 237.4 20.9 248 125-466 4-298 (300)
18 PRK12418 cysteinyl-tRNA synthe 99.9 1.7E-26 3.6E-31 240.2 23.9 252 125-466 5-308 (384)
19 PRK14535 cysS cysteinyl-tRNA s 99.9 3.6E-26 7.7E-31 248.1 25.8 254 126-466 245-554 (699)
20 TIGR03447 mycothiol_MshC cyste 99.9 2.5E-26 5.4E-31 240.0 20.7 250 127-466 34-335 (411)
21 PRK11893 methionyl-tRNA synthe 99.9 7.7E-25 1.7E-29 239.0 25.0 269 128-488 1-369 (511)
22 cd00668 Ile_Leu_Val_MetRS_core 99.9 1.1E-23 2.3E-28 216.1 22.8 253 129-458 1-312 (312)
23 cd00674 LysRS_core_class_I cat 99.9 1.9E-23 4.1E-28 215.4 22.8 259 128-463 19-319 (353)
24 cd00812 LeuRS_core catalytic c 99.9 1.3E-23 2.9E-28 215.5 17.1 242 129-460 1-314 (314)
25 TIGR00398 metG methionyl-tRNA 99.9 1.5E-22 3.2E-27 222.0 24.5 267 131-488 2-397 (530)
26 TIGR00464 gltX_bact glutamyl-t 99.9 1E-22 2.2E-27 218.4 20.3 140 308-468 172-313 (470)
27 cd00672 CysRS_core catalytic c 99.9 3E-22 6.6E-27 193.8 20.0 194 126-459 17-213 (213)
28 PRK01406 gltX glutamyl-tRNA sy 99.9 2.2E-22 4.7E-27 216.1 17.0 136 308-468 182-322 (476)
29 cd00814 MetRS_core catalytic c 99.9 7.2E-22 1.6E-26 203.2 20.1 240 129-458 1-319 (319)
30 PRK00133 metG methionyl-tRNA s 99.9 3.3E-21 7.1E-26 216.4 24.3 269 128-488 2-400 (673)
31 cd00818 IleRS_core catalytic c 99.9 3E-21 6.6E-26 199.9 21.3 256 129-458 2-338 (338)
32 cd00817 ValRS_core catalytic c 99.9 3.1E-21 6.6E-26 203.1 21.5 131 129-296 2-137 (382)
33 cd00802 class_I_aaRS_core cata 99.9 5.7E-22 1.2E-26 180.5 12.6 143 132-396 1-143 (143)
34 COG0143 MetG Methionyl-tRNA sy 99.9 5.8E-20 1.3E-24 198.7 23.6 267 127-488 4-403 (558)
35 KOG2007 Cysteinyl-tRNA synthet 99.9 7.4E-21 1.6E-25 196.5 15.5 253 125-463 51-348 (586)
36 PLN02224 methionine-tRNA ligas 99.9 5.7E-20 1.2E-24 202.5 23.5 119 125-296 66-187 (616)
37 PRK12267 methionyl-tRNA synthe 99.9 4E-20 8.7E-25 207.1 22.6 267 128-487 4-368 (648)
38 PRK00750 lysK lysyl-tRNA synth 99.9 6.5E-20 1.4E-24 198.9 23.1 272 104-460 5-321 (510)
39 PRK14895 gltX glutamyl-tRNA sy 99.8 3E-20 6.5E-25 198.6 19.9 139 308-468 171-311 (513)
40 PRK12268 methionyl-tRNA synthe 99.8 7.5E-20 1.6E-24 201.8 23.6 271 128-488 3-404 (556)
41 PRK12558 glutamyl-tRNA synthet 99.8 1.5E-20 3.3E-25 198.7 15.2 197 250-468 51-311 (445)
42 TIGR00467 lysS_arch lysyl-tRNA 99.8 7.5E-19 1.6E-23 189.6 19.5 259 128-463 18-317 (515)
43 PRK13208 valS valyl-tRNA synth 99.8 6.6E-18 1.4E-22 193.4 24.8 128 127-294 37-169 (800)
44 PRK12410 glutamylglutaminyl-tR 99.8 6.3E-18 1.4E-22 178.1 16.7 139 308-468 165-305 (433)
45 PLN02610 probable methionyl-tR 99.8 3.8E-17 8.1E-22 185.2 23.1 116 127-295 16-135 (801)
46 TIGR00422 valS valyl-tRNA synt 99.8 6.4E-17 1.4E-21 186.6 25.5 132 126-294 31-167 (861)
47 PF09334 tRNA-synt_1g: tRNA sy 99.8 6.4E-18 1.4E-22 178.1 15.6 114 130-296 1-117 (391)
48 PRK05729 valS valyl-tRNA synth 99.8 1.3E-16 2.8E-21 184.2 26.0 131 127-294 35-170 (874)
49 PLN02627 glutamyl-tRNA synthet 99.8 8E-18 1.7E-22 180.3 14.1 137 308-468 224-365 (535)
50 cd00808 GluRS_core catalytic c 99.7 3.2E-17 7E-22 160.7 15.0 217 135-468 6-234 (239)
51 PF01921 tRNA-synt_1f: tRNA sy 99.7 5.1E-18 1.1E-22 173.6 7.6 263 126-465 21-328 (360)
52 COG0525 ValS Valyl-tRNA synthe 99.7 1E-15 2.2E-20 170.8 26.3 130 128-294 33-167 (877)
53 PF00749 tRNA-synt_1c: tRNA sy 99.7 2E-16 4.3E-21 162.1 18.1 137 308-464 174-313 (314)
54 PF03485 Arg_tRNA_synt_N: Argi 99.7 2E-17 4.3E-22 137.3 8.3 82 14-101 2-85 (85)
55 PRK04156 gltX glutamyl-tRNA sy 99.7 2E-16 4.2E-21 171.5 15.4 231 127-467 99-402 (567)
56 COG1384 LysS Lysyl-tRNA synthe 99.7 2.3E-16 4.9E-21 165.7 14.4 257 128-465 19-323 (521)
57 cd00418 GlxRS_core catalytic c 99.7 5.1E-16 1.1E-20 151.1 14.4 169 253-468 53-225 (230)
58 cd09287 GluRS_non_core catalyt 99.7 7.8E-16 1.7E-20 150.5 13.1 167 134-397 5-172 (240)
59 PRK14900 valS valyl-tRNA synth 99.7 9.3E-15 2E-19 170.8 24.0 132 127-294 47-183 (1052)
60 COG0008 GlnS Glutamyl- and glu 99.7 2.9E-15 6.4E-20 159.6 17.5 140 308-468 182-323 (472)
61 PLN02943 aminoacyl-tRNA ligase 99.6 2.4E-14 5.3E-19 166.1 24.5 132 126-294 86-222 (958)
62 TIGR03838 queuosine_YadB gluta 99.6 4.6E-15 1E-19 148.2 13.6 184 136-405 6-242 (272)
63 PF00133 tRNA-synt_1: tRNA syn 99.6 1.3E-14 2.8E-19 161.3 17.9 133 126-294 21-158 (601)
64 TIGR00392 ileS isoleucyl-tRNA 99.6 8.6E-14 1.9E-18 160.9 23.7 132 127-294 35-171 (861)
65 PRK05743 ileS isoleucyl-tRNA s 99.6 3.6E-13 7.8E-18 155.9 26.7 128 127-294 48-180 (912)
66 PRK05710 glutamyl-Q tRNA(Asp) 99.6 2.2E-14 4.7E-19 145.0 14.3 82 308-404 167-248 (299)
67 cd07956 Anticodon_Ia_Arg Antic 99.6 2.8E-15 6.1E-20 138.6 5.8 78 437-514 2-80 (156)
68 KOG0436 Methionyl-tRNA synthet 99.5 1.1E-13 2.3E-18 140.9 15.6 268 126-483 37-409 (578)
69 KOG1149 Glutamyl-tRNA syntheta 99.5 8.1E-14 1.7E-18 142.5 14.3 146 297-468 201-353 (524)
70 PLN02843 isoleucyl-tRNA synthe 99.5 2.1E-12 4.5E-17 150.2 26.5 130 126-294 30-164 (974)
71 PLN03233 putative glutamate-tR 99.5 6.3E-13 1.4E-17 142.8 15.2 89 296-396 147-251 (523)
72 PTZ00402 glutamyl-tRNA synthet 99.5 9.4E-13 2E-17 142.9 15.5 129 308-468 208-353 (601)
73 cd00807 GlnRS_core catalytic c 99.4 9.3E-13 2E-17 128.5 12.2 219 134-468 5-229 (238)
74 TIGR00463 gltX_arch glutamyl-t 99.4 1.4E-12 3.1E-17 141.5 14.3 239 128-466 92-392 (560)
75 PLN02907 glutamate-tRNA ligase 99.4 1.5E-12 3.2E-17 146.1 14.2 131 308-467 368-512 (722)
76 PRK05347 glutaminyl-tRNA synth 99.4 1.2E-11 2.5E-16 133.6 16.4 129 296-466 170-333 (554)
77 TIGR00440 glnS glutaminyl-tRNA 99.3 1E-10 2.2E-15 126.0 16.1 127 318-463 182-325 (522)
78 PLN02859 glutamine-tRNA ligase 99.2 1.1E-10 2.3E-15 130.0 15.2 67 321-399 441-507 (788)
79 PRK14703 glutaminyl-tRNA synth 99.2 3E-10 6.4E-15 127.6 17.5 133 296-466 172-336 (771)
80 PTZ00419 valyl-tRNA synthetase 99.1 1.6E-09 3.4E-14 127.2 16.0 133 126-294 58-195 (995)
81 PLN02381 valyl-tRNA synthetase 99.1 1.3E-09 2.7E-14 128.0 14.8 133 126-294 126-263 (1066)
82 PRK00390 leuS leucyl-tRNA synt 99.1 1.5E-09 3.2E-14 124.6 15.0 116 129-297 33-153 (805)
83 TIGR00396 leuS_bact leucyl-tRN 99.1 1.6E-09 3.6E-14 124.6 15.3 116 128-296 29-149 (842)
84 COG0495 LeuS Leucyl-tRNA synth 99.1 1.4E-09 3E-14 122.4 14.2 114 128-294 34-152 (814)
85 PTZ00437 glutaminyl-tRNA synth 99.0 3.1E-09 6.7E-14 114.9 15.2 68 317-399 227-294 (574)
86 TIGR00395 leuS_arch leucyl-tRN 99.0 1.5E-09 3.2E-14 126.5 13.5 139 127-294 24-167 (938)
87 PLN02563 aminoacyl-tRNA ligase 99.0 6.2E-09 1.3E-13 120.6 15.0 116 128-296 110-231 (963)
88 PRK06039 ileS isoleucyl-tRNA s 99.0 6.4E-09 1.4E-13 121.7 15.3 133 126-294 39-176 (975)
89 COG0060 IleS Isoleucyl-tRNA sy 98.9 3.4E-08 7.5E-13 112.4 18.8 130 128-294 49-183 (933)
90 PTZ00427 isoleucine-tRNA ligas 98.9 1.8E-08 3.8E-13 119.1 15.0 157 102-294 73-237 (1205)
91 PRK13804 ileS isoleucyl-tRNA s 98.9 1.4E-08 3E-13 118.5 12.5 131 127-294 53-188 (961)
92 PLN02882 aminoacyl-tRNA ligase 98.8 2.9E-08 6.4E-13 117.4 15.1 132 127-294 37-173 (1159)
93 PLN02959 aminoacyl-tRNA ligase 98.7 8E-08 1.7E-12 113.3 12.9 167 127-294 44-239 (1084)
94 KOG0435 Leucyl-tRNA synthetase 98.6 4.7E-08 1E-12 105.3 5.8 114 126-294 56-175 (876)
95 PRK06039 ileS isoleucyl-tRNA s 98.5 5.6E-07 1.2E-11 105.6 11.0 92 336-465 544-638 (975)
96 PRK13804 ileS isoleucyl-tRNA s 98.5 5.8E-07 1.3E-11 105.1 10.2 92 336-465 582-675 (961)
97 PRK12300 leuS leucyl-tRNA synt 98.4 7E-07 1.5E-11 103.9 7.8 123 143-294 1-128 (897)
98 KOG0432 Valyl-tRNA synthetase 98.3 4.2E-06 9.2E-11 93.1 12.1 135 126-296 73-212 (995)
99 TIGR00395 leuS_arch leucyl-tRN 98.3 1.9E-06 4.1E-11 100.8 9.0 94 336-466 572-667 (938)
100 PTZ00427 isoleucine-tRNA ligas 98.2 2.3E-06 5E-11 101.5 8.5 91 336-464 672-766 (1205)
101 PRK12300 leuS leucyl-tRNA synt 98.2 5E-06 1.1E-10 96.9 10.8 107 336-488 529-638 (897)
102 TIGR00396 leuS_bact leucyl-tRN 98.2 2.9E-06 6.4E-11 98.0 7.8 96 336-465 519-650 (842)
103 PLN02882 aminoacyl-tRNA ligase 98.1 4.6E-06 9.9E-11 99.1 8.5 92 336-465 566-661 (1159)
104 PLN02381 valyl-tRNA synthetase 97.9 1.4E-05 3E-10 94.4 7.3 116 336-464 607-737 (1066)
105 PLN02959 aminoacyl-tRNA ligase 97.9 3.7E-05 8.1E-10 91.1 9.8 90 336-463 670-762 (1084)
106 PLN02563 aminoacyl-tRNA ligase 97.9 1.3E-05 2.9E-10 93.4 5.5 94 336-463 615-767 (963)
107 PTZ00419 valyl-tRNA synthetase 97.8 2.2E-05 4.7E-10 92.7 5.9 116 336-464 537-667 (995)
108 COG0495 LeuS Leucyl-tRNA synth 97.7 2.6E-05 5.6E-10 88.5 5.0 92 337-462 526-622 (814)
109 PRK00390 leuS leucyl-tRNA synt 97.6 0.00012 2.5E-09 84.7 7.7 90 336-465 522-616 (805)
110 KOG1247 Methionyl-tRNA synthet 97.5 0.00049 1.1E-08 71.3 9.0 116 125-294 11-131 (567)
111 TIGR00233 trpS tryptophanyl-tR 97.4 0.0013 2.9E-08 68.1 11.1 71 335-408 137-210 (328)
112 PF05746 DALR_1: DALR anticodo 97.3 0.00012 2.7E-09 63.9 2.8 43 474-516 1-44 (119)
113 PRK05912 tyrosyl-tRNA syntheta 97.3 0.00068 1.5E-08 72.3 8.7 59 336-404 187-245 (408)
114 PRK08560 tyrosyl-tRNA syntheta 97.2 0.0013 2.7E-08 68.4 8.8 65 336-410 167-234 (329)
115 PRK13354 tyrosyl-tRNA syntheta 97.2 0.0011 2.5E-08 70.6 8.5 60 336-405 185-244 (410)
116 KOG1147 Glutamyl-tRNA syntheta 97.2 0.0026 5.6E-08 68.0 10.8 31 128-159 199-229 (712)
117 cd00806 TrpRS_core catalytic c 97.2 0.0061 1.3E-07 61.8 13.1 66 336-404 136-205 (280)
118 KOG0432 Valyl-tRNA synthetase 97.1 0.0011 2.5E-08 74.3 7.4 87 371-464 576-675 (995)
119 PTZ00126 tyrosyl-tRNA syntheta 97.0 0.0046 1E-07 65.3 11.3 61 335-404 208-271 (383)
120 PRK12285 tryptophanyl-tRNA syn 97.0 0.007 1.5E-07 63.7 12.1 60 342-409 206-270 (368)
121 PLN02486 aminoacyl-tRNA ligase 97.0 0.0084 1.8E-07 63.3 12.3 57 344-408 224-283 (383)
122 smart00836 DALR_1 DALR anticod 96.8 0.00068 1.5E-08 59.6 2.4 40 474-513 1-44 (122)
123 TIGR00234 tyrS tyrosyl-tRNA sy 96.4 0.011 2.4E-07 62.5 8.6 59 336-404 176-234 (377)
124 COG0162 TyrS Tyrosyl-tRNA synt 96.3 0.011 2.3E-07 62.7 7.5 51 342-400 183-233 (401)
125 KOG0433 Isoleucyl-tRNA synthet 95.9 0.052 1.1E-06 60.4 10.9 114 139-295 66-188 (937)
126 KOG0433 Isoleucyl-tRNA synthet 95.8 0.012 2.6E-07 65.3 5.2 60 342-408 569-630 (937)
127 PTZ00348 tyrosyl-tRNA syntheta 95.7 0.042 9.1E-07 62.0 9.2 64 336-408 174-240 (682)
128 KOG0437 Leucyl-tRNA synthetase 95.4 0.078 1.7E-06 59.1 9.7 63 126-188 42-104 (1080)
129 KOG0434 Isoleucyl-tRNA synthet 95.2 0.071 1.5E-06 58.9 8.5 130 129-294 39-173 (1070)
130 cd00395 Tyr_Trp_RS_core cataly 93.7 0.073 1.6E-06 53.8 4.4 65 336-409 152-216 (273)
131 PRK12556 tryptophanyl-tRNA syn 93.5 0.054 1.2E-06 56.3 3.1 64 336-404 148-215 (332)
132 cd00805 TyrRS_core catalytic c 93.3 0.061 1.3E-06 54.3 2.9 61 337-408 151-211 (269)
133 PRK12284 tryptophanyl-tRNA syn 92.0 0.16 3.5E-06 54.3 4.1 69 336-408 147-219 (431)
134 COG0180 TrpS Tryptophanyl-tRNA 91.9 0.12 2.7E-06 52.9 3.0 66 336-409 144-217 (314)
135 PF00579 tRNA-synt_1b: tRNA sy 89.2 0.25 5.4E-06 50.3 2.5 68 336-409 148-217 (292)
136 PRK00927 tryptophanyl-tRNA syn 88.5 0.41 8.8E-06 49.9 3.5 71 336-409 137-214 (333)
137 PRK12282 tryptophanyl-tRNA syn 88.2 0.28 6.2E-06 51.0 2.2 68 336-408 141-213 (333)
138 KOG0434 Isoleucyl-tRNA synthet 88.2 0.19 4.2E-06 55.7 0.9 101 382-485 592-703 (1070)
139 PRK12283 tryptophanyl-tRNA syn 84.8 0.76 1.6E-05 48.8 3.2 26 383-408 256-281 (398)
140 KOG1148 Glutaminyl-tRNA synthe 78.9 2.6 5.7E-05 46.3 4.6 61 127-188 246-334 (764)
141 KOG0435 Leucyl-tRNA synthetase 78.7 1.4 3E-05 49.2 2.5 40 391-459 617-657 (876)
142 PF00579 tRNA-synt_1b: tRNA sy 72.0 3.8 8.2E-05 41.7 3.6 40 127-171 3-42 (292)
143 cd00805 TyrRS_core catalytic c 71.4 3.9 8.5E-05 41.2 3.5 38 134-177 4-42 (269)
144 PLN02886 aminoacyl-tRNA ligase 71.2 4.9 0.00011 42.7 4.2 71 336-409 183-272 (389)
145 KOG0437 Leucyl-tRNA synthetase 66.7 2.2 4.8E-05 48.1 0.6 20 389-408 708-727 (1080)
146 cd00395 Tyr_Trp_RS_core cataly 62.7 7.3 0.00016 39.4 3.4 34 134-171 3-37 (273)
147 cd01134 V_A-ATPase_A V/A-type 58.7 2.5E+02 0.0054 29.8 13.8 130 70-215 171-303 (369)
148 PRK12282 tryptophanyl-tRNA syn 49.8 15 0.00033 38.2 3.3 40 134-179 6-45 (333)
149 PLN02886 aminoacyl-tRNA ligase 47.4 13 0.00029 39.5 2.4 38 134-177 50-87 (389)
150 COG0180 TrpS Tryptophanyl-tRNA 45.1 25 0.00053 36.3 3.9 38 134-176 9-46 (314)
151 COG4746 Uncharacterized protei 43.8 76 0.0016 25.6 5.5 71 8-80 1-78 (80)
152 PRK00927 tryptophanyl-tRNA syn 42.7 16 0.00035 38.0 2.2 40 134-179 5-44 (333)
153 PRK04192 V-type ATP synthase s 40.6 5.1E+02 0.011 29.3 13.4 127 71-215 242-373 (586)
154 PRK12284 tryptophanyl-tRNA syn 40.3 26 0.00057 37.7 3.4 40 134-177 6-45 (431)
155 PF00975 Thioesterase: Thioest 39.2 27 0.00058 33.2 3.0 33 145-177 71-103 (229)
156 PRK05320 rhodanese superfamily 35.6 99 0.0021 31.0 6.5 79 67-151 15-94 (257)
157 PRK12556 tryptophanyl-tRNA syn 35.4 27 0.00058 36.4 2.5 40 134-177 7-46 (332)
158 PF08373 RAP: RAP domain; Int 33.2 33 0.00071 25.5 2.0 23 154-177 18-42 (58)
159 PF10007 DUF2250: Uncharacteri 33.2 64 0.0014 27.1 3.9 43 277-319 36-78 (92)
160 KOG2713 Mitochondrial tryptoph 32.6 15 0.00032 37.2 -0.0 56 336-398 154-218 (347)
161 PRK12283 tryptophanyl-tRNA syn 31.7 32 0.0007 36.7 2.4 37 134-177 6-43 (398)
162 TIGR01043 ATP_syn_A_arch ATP s 28.7 5.2E+02 0.011 29.2 11.1 82 126-214 283-367 (578)
163 KOG2623 Tyrosyl-tRNA synthetas 27.3 1.1E+02 0.0024 32.5 5.2 57 339-402 227-284 (467)
164 cd02156 nt_trans nucleotidyl t 26.8 32 0.00068 29.1 1.1 15 135-150 4-18 (105)
165 COG1832 Predicted CoA-binding 23.8 1.1E+02 0.0025 27.7 4.0 36 127-173 16-51 (140)
166 PF09456 RcsC: RcsC Alpha-Beta 23.8 55 0.0012 27.5 1.9 25 148-172 6-30 (92)
167 COG1656 Uncharacterized conser 23.7 57 0.0012 30.4 2.2 22 156-177 17-38 (165)
168 TIGR02855 spore_yabG sporulati 23.4 4.8E+02 0.01 26.5 8.7 64 336-408 196-260 (283)
169 PF01927 Mut7-C: Mut7-C RNAse 23.2 64 0.0014 29.3 2.5 23 153-176 9-31 (147)
170 cd01133 F1-ATPase_beta F1 ATP 22.6 8.1E+02 0.018 24.8 12.8 124 70-214 83-211 (274)
171 PRK09620 hypothetical protein; 21.8 1.4E+02 0.0029 29.4 4.6 44 126-172 2-50 (229)
172 cd01132 F1_ATPase_alpha F1 ATP 21.2 8.7E+02 0.019 24.6 11.6 61 101-172 107-167 (274)
173 COG2945 Predicted hydrolase of 20.9 1.5E+02 0.0033 28.6 4.5 43 128-175 28-70 (210)
174 PF04028 DUF374: Domain of unk 20.6 91 0.002 25.0 2.5 20 153-172 21-40 (74)
175 cd04765 HTH_MlrA-like_sg2 Heli 20.6 3.6E+02 0.0077 22.7 6.3 17 479-495 48-64 (99)
176 PF03464 eRF1_2: eRF1 domain 2 20.5 1.6E+02 0.0034 26.1 4.4 27 70-96 57-84 (133)
177 cd05212 NAD_bind_m-THF_DH_Cycl 20.3 1.2E+02 0.0026 27.4 3.6 34 125-172 26-59 (140)
No 1
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=7.8e-114 Score=942.03 Aligned_cols=479 Identities=79% Similarity=1.247 Sum_probs=434.6
Q ss_pred cccc-ccCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEEEecCcEEEEEeChhHHHHHHHHH
Q 010043 35 PLIA-ACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKM 113 (519)
Q Consensus 35 ~~i~-~~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~~i~vagpGfIN~~l~~~~~~~~l~~~ 113 (519)
..++ ||+++|||||||+||.|||.++++++..++|++||++|++.|+..++|++|+++|||||||+|++.++.+.+.++
T Consensus 23 ~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~~ 102 (576)
T PLN02286 23 PLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERM 102 (576)
T ss_pred eEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHHH
Confidence 3455 457899999999999999999988888899999999999999876789999999999999999999999999888
Q ss_pred HHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCC
Q 010043 114 LVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP 193 (519)
Q Consensus 114 ~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~ 193 (519)
+..+..++.+...+++|+||||||||||||||||+||+||||+|||||+++||+|+|+|||||||+||++++.++...+|
T Consensus 103 ~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~ 182 (576)
T PLN02286 103 LVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFP 182 (576)
T ss_pred HHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcC
Confidence 87765433333456899999999999999999999999999999999999999999999999999999999988866677
Q ss_pred CCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc
Q 010043 194 NSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES 273 (519)
Q Consensus 194 ~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es 273 (519)
+...+.+.++.++..+|+++++.++.+|++.+++++.+.+||+||+++.++|++++++++.+|+++|++|||+||..+||
T Consensus 183 ~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges 262 (576)
T PLN02286 183 NWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGES 262 (576)
T ss_pred cccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCch
Confidence 64435567899998899999999999999999999999999999999999999999999999999999999999877899
Q ss_pred cccCcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccH
Q 010043 274 FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353 (519)
Q Consensus 274 ~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf 353 (519)
+|.+.++++++.|+++|+++++|||+|+++++.+.++||+|||||+||+|+|||||.||+..+++|++|||||++|+.||
T Consensus 263 ~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf 342 (576)
T PLN02286 263 FYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHF 342 (576)
T ss_pred hhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHH
Confidence 99988999999999999999999999999887667899999999999999999999999987799999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 010043 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (519)
Q Consensus 354 ~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~ 433 (519)
+|++++++++|+.++ +++.++.|+.||||++.+|+|||||+|++|+|+||++++.++|++.+.++++.+++++++.++
T Consensus 343 ~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~ 420 (576)
T PLN02286 343 DMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQ 420 (576)
T ss_pred HHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHH
Confidence 999999999998420 113579999999998788999999999999999999999999999999987667799999999
Q ss_pred HHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCCChhhhhh-cCCCCCCHHhHHHHh
Q 010043 434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKK-VGLVFEVEALTMFQR 512 (519)
Q Consensus 434 ~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~silrka~~~~~~~~~-~~~~l~~~~e~~l~~ 512 (519)
+|+.+|++|+||++|++++.++|+|||+++++++|||||||||||||+||||||++.+...+.. .+..|.+|+|++|++
T Consensus 421 ~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~ 500 (576)
T PLN02286 421 AAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGL 500 (576)
T ss_pred HHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999864322211 224588999999988
Q ss_pred hcc
Q 010043 513 LSF 515 (519)
Q Consensus 513 ~~~ 515 (519)
...
T Consensus 501 ~l~ 503 (576)
T PLN02286 501 HLL 503 (576)
T ss_pred HHH
Confidence 654
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-112 Score=921.57 Aligned_cols=486 Identities=34% Similarity=0.550 Sum_probs=427.0
Q ss_pred hHHHHHHHHHHHHHHhcC-CCCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCee
Q 010043 10 NVKRELEKVFDLALKATV-PNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIE 87 (519)
Q Consensus 10 ~~~~~~~~~~~~al~~~~-~~~~~~~~~i~~-~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~ 87 (519)
++++.+++.|.++|.+.. . .....+.+++ |+++|||||||+||.|||.++ +||++||++|+++|+..+.++
T Consensus 2 ~i~~~l~~~i~~~l~~~~~~-~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~------~~P~eiA~~i~~~l~~~~~~~ 74 (577)
T COG0018 2 NIKQLLKEKIAEALSAAGLD-VEEIEILVEPPKDPEHGDFATNIAFQLAKKLG------KNPREIAEEIAEKLDTDEIIE 74 (577)
T ss_pred CHHHHHHHHHHHHHHHhhcc-ccccccceecCCCCCcccccchHHHHHhhhcC------CCHHHHHHHHHHhccccCcEe
Confidence 467777788888877764 2 1223445554 478999999999999999999 999999999999998877899
Q ss_pred eEEEecCcEEEEEeChhHHHHHHHHHHHcCCC-C-CCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCC
Q 010043 88 SCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-T-WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (519)
Q Consensus 88 ~i~vagpGfIN~~l~~~~~~~~l~~~~~~~~~-~-~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G 165 (519)
+|+++|||||||++++.++.+.+.+++..+.. + ....++|++|+||||||||||||||||+|||||||+|||+|+++|
T Consensus 75 ~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~G 154 (577)
T COG0018 75 KVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLG 154 (577)
T ss_pred EEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcC
Confidence 99999999999999999999999999886444 3 344568999999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHH-HHHHHHHHHHccCChHHHHH
Q 010043 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFK-ERAQQAVVRLQSGEPKYHEA 244 (519)
Q Consensus 166 ~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~-~~~~~~~~~~e~gd~~~~~~ 244 (519)
|+|+|+|||||||+||++|+.++.....+.......++.++.++|+++++.++++++.. .++++.+.++|.||+++ ++
T Consensus 155 y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~l 233 (577)
T COG0018 155 YDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-EL 233 (577)
T ss_pred CCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HH
Confidence 99999999999999999999887665444211122456677788999999888877633 78999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcee-e--eccccccCcHHHHHHHHHHCCCeEeecCeEEEEec-----CCCCCeEEEcCC
Q 010043 245 WAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE-----GVNIPLIIVKSD 316 (519)
Q Consensus 245 w~~~~~~~~~~~~~~~~~Lgi~fd-~--~~es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~-----g~~~d~Vl~ksD 316 (519)
|+++++.++.+++++|++|||+|| | ++|++|++.+.++++.|+++|++|+++||+|+++. |+++|+||+|||
T Consensus 234 w~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~KSD 313 (577)
T COG0018 234 WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQKSD 313 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEEcC
Confidence 999999999999999999999996 4 58899999999999999999999999999988874 788999999999
Q ss_pred CCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec
Q 010043 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (519)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 396 (519)
||++|+|||||||.||++ +++|++|||||+||+.||+|++.+++++|+.+ ....+.|++|||+++.+|+|||||.
T Consensus 314 Gt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~----~~~~~~h~~~~l~~~~~g~kmStR~ 388 (577)
T COG0018 314 GTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLELLGYGP----DKEVLLHQGVGLVRGGEGVKMSTRA 388 (577)
T ss_pred CCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCC----ccceEEEEEEeeeECCCCccccccC
Confidence 999999999999999995 99999999999999999999999999999963 1257999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHH
Q 010043 397 SEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLY 476 (519)
Q Consensus 397 G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqY 476 (519)
|++|+|+|+++++.++|.+.+.++ +..+ +++|+.||++||||++|+++|+++|+|||+++++|+|||+|||||
T Consensus 389 G~~vtl~dllde~~era~~~~~~~-~~~~------~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQY 461 (577)
T COG0018 389 GNVVTLDDLLDEAGERAPEEMEEK-EEKN------EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQY 461 (577)
T ss_pred CceEEHHHHHHHHHHHhhhHhhhh-hhhh------HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHH
Confidence 999999999999999999999876 3321 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhhhhh-cCCCCCCHHhHHHHhhcc
Q 010043 477 AHARICSIIRKSGKDIEELKK-VGLVFEVEALTMFQRLSF 515 (519)
Q Consensus 477 a~aR~~silrka~~~~~~~~~-~~~~l~~~~e~~l~~~~~ 515 (519)
|||||||||||++.+-..... .+..|.+++|+.|++...
T Consensus 462 A~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~ 501 (577)
T COG0018 462 AHARICSILRKAGEDELDLSTEADALLTELEERELVKKLL 501 (577)
T ss_pred HHHHHHHHHHhccccccccccccchhccChHHHHHHHHHH
Confidence 999999999999875222111 113688999999988654
No 3
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.6e-108 Score=895.15 Aligned_cols=480 Identities=33% Similarity=0.523 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccc-ccCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeE
Q 010043 11 VKRELEKVFDLALKATVPNETDVRPLIA-ACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 89 (519)
Q Consensus 11 ~~~~~~~~~~~al~~~~~~~~~~~~~i~-~~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~~i 89 (519)
++..|++.|.+++....+.. ...+.++ ||+++||||||| +|.|||.++ ++|++||++|++.|+.+ .|++|
T Consensus 3 ~~~~i~~~l~~~l~~~~~~~-~~~~~i~~~~~~~~GD~~~~-~~~lak~~~------~~P~~iA~~i~~~l~~~-~i~~v 73 (562)
T PRK12451 3 YKTQFAESLSNIFTNELTQQ-QILDLIETPKQDEFGDAAFP-CFSLAKQYK------KAPAIIAKEVAEKLSDP-FFTKV 73 (562)
T ss_pred HHHHHHHHHHHHHHhhcccc-ccceeeecCCCCCCCcccch-HHHHHHHcC------CCHHHHHHHHHHhcccc-cccee
Confidence 56677778888876543211 1123444 446899999999 699999999 99999999999999654 68999
Q ss_pred EEecCcEEEEEeChhHHHHHHH-HHHHcCCCCCC-ccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCe
Q 010043 90 SVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVE 167 (519)
Q Consensus 90 ~vagpGfIN~~l~~~~~~~~l~-~~~~~~~~~~~-~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~ 167 (519)
+++|| ||||+|++.++...+. +++..+..++. +.+++++|+||||||||||||||||+||+||||+|||||+++||+
T Consensus 74 e~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~ 152 (562)
T PRK12451 74 EAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYE 152 (562)
T ss_pred EeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCC
Confidence 99996 9999999999987754 66655444332 224578999999999999999999999999999999999999999
Q ss_pred EEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHH
Q 010043 168 VLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247 (519)
Q Consensus 168 V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~ 247 (519)
|+|+|||||||+||++++.++ .+++......+.++.++..+|+++++.++.+|++++++++.+.+||+||+++.++|+.
T Consensus 153 V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~ 231 (562)
T PRK12451 153 VVGINYIGDWGTQFGKLITAY-KKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNW 231 (562)
T ss_pred eEEEeeecCchHHHHHHHHHH-HHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 999999999999999999776 4454332234568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHHHHCCCeEeecCeEEEEecCC-CCCeEEEcCCCCccccchh
Q 010043 248 ICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGV-NIPLIIVKSDGGFNYASTD 325 (519)
Q Consensus 248 ~~~~~~~~~~~~~~~Lgi~fd~-~~es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~-~~d~Vl~ksDG~~tY~t~D 325 (519)
+++++++.|+++|++|||+||+ .+||+|.+.++++++.|+++|+++++|||+|+++++. ++|+||+|||||+||+|+|
T Consensus 232 ~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ksDGt~~Y~t~D 311 (562)
T PRK12451 232 FRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATRD 311 (562)
T ss_pred HHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeCCCccccchhH
Confidence 9999999999999999999984 5889998889999999999999999999999998843 2689999999999999999
Q ss_pred HHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHH
Q 010043 326 LAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (519)
Q Consensus 326 iA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dl 405 (519)
||||.||+..+++|++|||||++|++||+|++++++++||. ++.++.|+.||||.+ +|+|||||+|++|+|+||
T Consensus 312 iA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~-----~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~dL 385 (562)
T PRK12451 312 LTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT-----WVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEEV 385 (562)
T ss_pred HHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC-----cccCeEEEeeeeEec-CCCCCcCCCCCeeEHHHH
Confidence 99999999878999999999999999999999999999994 245799999999986 577999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHH
Q 010043 406 LDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSII 485 (519)
Q Consensus 406 l~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~sil 485 (519)
++++..+|.+.+.++++ .+ ++.+++++.+|++|+||++|++++.++|+|||+++++++|||+||||||||||||||
T Consensus 386 ldea~~~a~~~~~~~~~--~l--~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIl 461 (562)
T PRK12451 386 LEEAIELAKQNIEEKNP--NL--KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSIL 461 (562)
T ss_pred HHHHHHHHHHHHHhhcc--cc--ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHH
Confidence 99999999999988754 34 347789999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhhhhhcCCCCCCHHhHHHHhhc
Q 010043 486 RKSGKDIEELKKVGLVFEVEALTMFQRLS 514 (519)
Q Consensus 486 rka~~~~~~~~~~~~~l~~~~e~~l~~~~ 514 (519)
||++.+.. ..+..|.+|.|++|++..
T Consensus 462 rka~~~~~---~~~~~l~~~~E~~Ll~~L 487 (562)
T PRK12451 462 RKESVEFE---TCTFALKDDYSWSVVKLL 487 (562)
T ss_pred HhcCCCcc---ccccCCCCHHHHHHHHHH
Confidence 99975321 123347899999998653
No 4
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-106 Score=811.58 Aligned_cols=506 Identities=61% Similarity=1.027 Sum_probs=477.2
Q ss_pred ccccchHhHHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCC
Q 010043 3 TEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLP 81 (519)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~i~~-~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~ 81 (519)
..++.|.+++.++.+++..||...+|+..++++++.| |+++|||||||.||.+++.+|+++.+++ |++||++|...+|
T Consensus 65 ~~~~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~~~-P~~va~~l~~~lP 143 (656)
T KOG4426|consen 65 KNEKFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGINKR-PRDVAQELQKHLP 143 (656)
T ss_pred cCccccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCcccccccccccchhhHHHHHhhcCCccC-cHHHHHHHHhhCC
Confidence 3468899999999999999999999965567777777 4789999999999999999999888875 9999999999999
Q ss_pred CCCCeeeEEEecCcEEEEEeChhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHH
Q 010043 82 PSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARML 161 (519)
Q Consensus 82 ~~~~v~~i~vagpGfIN~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL 161 (519)
.+++|++++|+||||||++|+.+|+++.+..++.+|-. .|....++|+|+|+|||++|.|||||+||+||||+|||+|
T Consensus 144 ~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~Rll 221 (656)
T KOG4426|consen 144 TSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLL 221 (656)
T ss_pred chhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHH
Confidence 98999999999999999999999999999998887754 3445568999999999999999999999999999999999
Q ss_pred HHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHH
Q 010043 162 EFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKY 241 (519)
Q Consensus 162 ~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~ 241 (519)
++.|++|.|.||+||||+|||||+++++++||+..... .+|++|.-+|++.+.+++.+++|+++|.+.++++|.|||..
T Consensus 222 E~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vs-p~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~ 300 (656)
T KOG4426|consen 222 EFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVS-PPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDI 300 (656)
T ss_pred HhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccC-CCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChH
Confidence 99999999999999999999999999999999865433 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeeeccccccCcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCCccc
Q 010043 242 HEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNY 321 (519)
Q Consensus 242 ~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY 321 (519)
++.|..+|+.|..+|+..|++|.|+....|||||++.+.++++.|..+|++.++||+-+++.+|-+.|..++||||..||
T Consensus 301 ~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~IPLtvVKSDGGftY 380 (656)
T KOG4426|consen 301 RKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCDIPLTVVKSDGGFTY 380 (656)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCCcceEEEecCCCccc
Confidence 99999999999999999999999999889999999999999999999999999999999999998899999999999999
Q ss_pred cchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCccc
Q 010043 322 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (519)
Q Consensus 322 ~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 401 (519)
.|+|+|+.++|+.+..+||+|||+|++|+.||..+|++++..||.. +..++..|++||+|+|+||+|+.||.|.+|.
T Consensus 381 dtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld---~~~~RV~HvgFGlVLGeD~KkFkTRsgetVr 457 (656)
T KOG4426|consen 381 DTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLD---PTYPRVEHVGFGLVLGEDKKKFKTRSGETVR 457 (656)
T ss_pred ccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccC---CCccceeeeeeeeEEccCcccccccccceee
Confidence 9999999999999999999999999999999999999999999973 6778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHH
Q 010043 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (519)
Q Consensus 402 l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~ 481 (519)
|.|||+|+..|+.+.+.+||+...|+++|+...++.||-++++|.+|+..|.++|.|++|+|++-.|||++|+.|||+||
T Consensus 458 L~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRI 537 (656)
T KOG4426|consen 458 LLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRI 537 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC----hhhhhhcC-CCCCCHHhHHHHhhcc
Q 010043 482 CSIIRKSGKD----IEELKKVG-LVFEVEALTMFQRLSF 515 (519)
Q Consensus 482 ~silrka~~~----~~~~~~~~-~~l~~~~e~~l~~~~~ 515 (519)
|||.||++.| +..+.+.+ ..|.|+.|++|=++.|
T Consensus 538 cSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lL 576 (656)
T KOG4426|consen 538 CSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLL 576 (656)
T ss_pred HHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHH
Confidence 9999999998 55666666 8899999999877654
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=5.2e-99 Score=827.06 Aligned_cols=479 Identities=34% Similarity=0.532 Sum_probs=410.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccc-ccCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEE
Q 010043 12 KRELEKVFDLALKATVPNETDVRPLIA-ACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCS 90 (519)
Q Consensus 12 ~~~~~~~~~~al~~~~~~~~~~~~~i~-~~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~~i~ 90 (519)
++.|++.|.+++........ ..+.++ ||++.|||||||+||.+||.++ ++|++||++|++.|...++|++++
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~GD~~~~~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ve 74 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLSKE-SEILLEETPNPEFGDYASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVE 74 (566)
T ss_pred hHHHHHHHHHHHHhcccccc-cceeeecCCCCCCCccccHHHHHHHHHcC------CCHHHHHHHHHHhCCCcCcEeEEE
Confidence 45567777777765421111 123344 4578999999999999999999 999999999999998767899999
Q ss_pred EecCcEEEEEeChhHHHHHHH-HHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEE
Q 010043 91 VAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 169 (519)
Q Consensus 91 vagpGfIN~~l~~~~~~~~l~-~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~ 169 (519)
++|| ||||+|++.++...+. +++..+..++.....+++|+||||||||+|||||||+|++++||+|+|+|+++||+|.
T Consensus 75 ~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~ 153 (566)
T TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153 (566)
T ss_pred EeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCee
Confidence 9998 9999999988887754 6665554433222237899999999999999999999999999999999999999999
Q ss_pred EEeccCCcchHHHHHHHHHHhhCCCCC-ccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHH
Q 010043 170 RRNHVGDWGTQFGMLIEYLFEKFPNSE-DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (519)
Q Consensus 170 ~~~yi~D~G~Q~~~l~~~~~~~~~~~~-~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~ 248 (519)
|+|||||||+||++++.++.....+.. .....++.++..+|+++++.++.++++.+++++.+.++|.||+++.++|+.+
T Consensus 154 r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~ 233 (566)
T TIGR00456 154 REYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRL 233 (566)
T ss_pred EEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999999999999987754433211 1234567778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcee-ee--ccccccCcHHHHHHHHHHCCCeEeecCeEEEEec--CCC-CCeEEEcCCCCcccc
Q 010043 249 CEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVN-IPLIIVKSDGGFNYA 322 (519)
Q Consensus 249 ~~~~~~~~~~~~~~Lgi~fd-~~--~es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~-~d~Vl~ksDG~~tY~ 322 (519)
++++++.|+++|++|||+|| |. +|++|.+.++++++.|+++|+++++ ||+|++++ |++ +|+||+|||||+||+
T Consensus 234 ~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y~ 312 (566)
T TIGR00456 234 VEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLYL 312 (566)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCceec
Confidence 99999999999999999997 55 6788899999999999999999977 99999987 455 799999999999999
Q ss_pred chhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccH
Q 010043 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (519)
Q Consensus 323 t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 402 (519)
|+|||||.+|+. +++|++|||||++|++||+|++++++++|+. .+.++.|++||+|.+ .|||||+||+|++
T Consensus 313 t~DiA~~~~k~~-~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~-----~~~~l~h~~~~~V~~---~kmSkr~Gn~V~~ 383 (566)
T TIGR00456 313 TRDIAYHLDKLE-RGFDKMIYVWGSDHHLHIAQFFAILEKLGFY-----KKKELIHLNFGMVPL---GSMKTRRGNVISL 383 (566)
T ss_pred hhhHHHHHHHHh-cCCCEEEEEecCcHHHHHHHHHHHHHHcCCC-----CCCceEEEEEEEEEC---CCCCccCCceeeH
Confidence 999999999995 4999999999999999999999999999984 345899999999985 4799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHH
Q 010043 403 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARIC 482 (519)
Q Consensus 403 ~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~ 482 (519)
+|+++++..+|.+.+.++++. +.+++++.+|++|+||++|++++.++++|||+++++++||++|||||||||+|
T Consensus 384 ~dll~~~~~ra~~~i~~~~~~------~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~ 457 (566)
T TIGR00456 384 DNLLDEASKRAGNVITIKNDL------EEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARIC 457 (566)
T ss_pred HHHHHHHHHHHHHHHHhcCCc------cHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHH
Confidence 999999999999999887442 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhhhhhcCCCCCCHHhHHHHhhc
Q 010043 483 SIIRKSGKDIEELKKVGLVFEVEALTMFQRLS 514 (519)
Q Consensus 483 silrka~~~~~~~~~~~~~l~~~~e~~l~~~~ 514 (519)
||+||++.+.......+..+.++.|+.|++..
T Consensus 458 SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l 489 (566)
T TIGR00456 458 SILRKADIDGEKLIADDFSLLEEKEKELLKLL 489 (566)
T ss_pred HHHHhcccccccccccccCCCCHHHHHHHHHH
Confidence 99999975422111123234588898887653
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-89 Score=740.64 Aligned_cols=423 Identities=35% Similarity=0.522 Sum_probs=365.5
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCCCCccccc-ccCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCe
Q 010043 8 TGNVKRELEKVFDLALKATVPNETDVRPLIA-ACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI 86 (519)
Q Consensus 8 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~i~-~~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v 86 (519)
|.++++.|++.+.+++......... ...++ ||+++||||+||+||.+||.++ ++|++||++|++. |
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~i~~~------i 68 (507)
T PRK01611 2 MMDIKELLAEALAAALEAGGLPELP-AVLIERPKDPEHGDYATNVAMQLAKKLK------KNPREIAEEIVEA------I 68 (507)
T ss_pred hHHHHHHHHHHHHHHHHhccccccc-cceeecCCCCCccCeecHHHHHHHHHcC------CCHHHHHHHHHhh------e
Confidence 4467888888888888654221110 12344 4578999999999999999999 9999999999985 7
Q ss_pred eeEEEecCcEEEEEeChhHHHHHHHHHHHcCCCCC-CccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCC
Q 010043 87 ESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (519)
Q Consensus 87 ~~i~vagpGfIN~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G 165 (519)
++++++|||||||+|++.++.+.+.+++..+..++ .+.+++++|+||||||||+|||||||+|++++||+|+|+|+++|
T Consensus 69 ~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G 148 (507)
T PRK01611 69 EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG 148 (507)
T ss_pred eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999988876554433 23457889999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHH
Q 010043 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAW 245 (519)
Q Consensus 166 ~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w 245 (519)
|+|.+++|+||||+|++.++.+.. ..|
T Consensus 149 ~~V~~~~~i~D~G~qi~~~a~~~~-----------------------------------------------------~~~ 175 (507)
T PRK01611 149 YDVTREYYVNDAGTQIGMLIASLE-----------------------------------------------------LLW 175 (507)
T ss_pred CcEEEEeeeCCccHHHHHHHHHHH-----------------------------------------------------HHH
Confidence 999999999999999998764310 168
Q ss_pred HHHHHHHHHHHHHHHHHcCCcee-eecc--ccccCcHHHHHHHHHHCCCeE-eecCeEEEEec--CCCCCeEEEcCCCCc
Q 010043 246 AQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVIDELSKQGLVE-ESQGARVIFIE--GVNIPLIIVKSDGGF 319 (519)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Lgi~fd-~~~e--s~~~~~v~~vi~~L~~~g~~~-~~dGa~~~~~~--g~~~d~Vl~ksDG~~ 319 (519)
+.+++++++.|+++|++|||+|| |.++ +.+.+.++++++.|+++|++| +++|++||+++ |+++|+||+|||||+
T Consensus 176 ~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~ 255 (507)
T PRK01611 176 RKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTY 255 (507)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCc
Confidence 88999999999999999999996 5544 456788999999999999999 99999999987 566799999999999
Q ss_pred cccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCc
Q 010043 320 NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (519)
Q Consensus 320 tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~ 399 (519)
||+|+|||||.+|+.. +|++|||||++|+.||++++.+++++|+.+ +....+.|+.||+|++++|+|||||+||+
T Consensus 256 ~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~---~~~~~~~h~~~glv~~~~g~KMSkR~Gn~ 330 (507)
T PRK01611 256 TYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALKALGYDP---DALEVLLHQMVGLVRGGEGVKMSTRAGNV 330 (507)
T ss_pred cchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHHHcCCCc---ccceEEEEEEEEeeECCCCCcccCCCCce
Confidence 9999999999999954 999999999999999999999999999853 11245999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHH
Q 010043 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479 (519)
Q Consensus 400 v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~a 479 (519)
|+++||++++..+|.+.+.++ ++|++||++|+||++|+.++.++++|||+++++++|+|+||+|||||
T Consensus 331 i~l~dll~~a~g~~~~~~~~~------------~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~a 398 (507)
T PRK01611 331 VTLDDLLDEAVGRARELIEEK------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHA 398 (507)
T ss_pred eEHHHHHHHHHHHHHHHHHhh------------hhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHH
Confidence 999999999999999888764 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhhhhcCCCCCCHHhHHHHhhcc
Q 010043 480 RICSIIRKSGKDIEELKKVGLVFEVEALTMFQRLSF 515 (519)
Q Consensus 480 R~~silrka~~~~~~~~~~~~~l~~~~e~~l~~~~~ 515 (519)
|+|||+||++..... ..+..|.++.|+.|++...
T Consensus 399 R~~sil~k~~~~~~~--~~~~~l~~~~e~~Ll~~L~ 432 (507)
T PRK01611 399 RICSILRKAAEAGID--LLLALLTEEEEKELIKKLA 432 (507)
T ss_pred HHHHHHHhhhccCcc--ccccccCCHHHHHHHHHHH
Confidence 999999998642111 0112377889998887543
No 7
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-82 Score=650.52 Aligned_cols=451 Identities=31% Similarity=0.474 Sum_probs=400.5
Q ss_pred CCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEEEecCcEEEEEeChhHHHHHHHHHHHc-CCC
Q 010043 41 TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVD-GIE 119 (519)
Q Consensus 41 ~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~~i~vagpGfIN~~l~~~~~~~~l~~~~~~-~~~ 119 (519)
.++-||.-.++. .++ -.|.+.|.+.++.++....++++...|| |++|+|++..+.+.+...+.. .+.
T Consensus 33 ~~~r~~~~~~lp-----~i~------~~~~~~a~~~~e~~~~~~~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i~~~~~~ 100 (567)
T KOG1195|consen 33 SMDRPDLLLPLP-----RIR------VQGKEDALRWAEALPCNRIVEEVGASGP-FVQFFLNRRRLIKSVLPIIEEQREK 100 (567)
T ss_pred cCCCCCccccCc-----ccc------cCCHHHHHHHHHhcccccchHHHhcCCC-eEEEEecHHHHHHHHHHHHHHHhcc
Confidence 356778766543 233 4455999999999998888999999997 999999999999988765544 333
Q ss_pred C-CCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCcc
Q 010043 120 T-WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA 198 (519)
Q Consensus 120 ~-~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~ 198 (519)
+ ....+.+++|+|||||||++||+||||+|+++||.+++|+.+.+||+|++.||+||||+|||+++..+ .++++++..
T Consensus 101 ~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~-~~~g~e~~L 179 (567)
T KOG1195|consen 101 YGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGF-QLYGDEEEL 179 (567)
T ss_pred cCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccH-HhhCchhhh
Confidence 3 33346799999999999999999999999999999999999999999999999999999999998543 455554445
Q ss_pred ccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccc-ccc
Q 010043 199 NETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYN 276 (519)
Q Consensus 199 ~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es-~~~ 276 (519)
.-+||.+|.+.|+++++..+.+++..+.+++.+.+||.||.+++.+|++|++.++.++.++|+||||+|| |.+|| .++
T Consensus 180 ~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~ 259 (567)
T KOG1195|consen 180 QLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSN 259 (567)
T ss_pred ccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHH
Confidence 5689999999999999988888999999999999999999999999999999999999999999999996 88998 557
Q ss_pred CcHHHHHHHHHHCCCeEeecCeEEEEecCCCC---CeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccH
Q 010043 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNI---PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353 (519)
Q Consensus 277 ~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~---d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf 353 (519)
+.++++++.++..|++.+.+|+.||++++.++ ..+++|||||++|.|||||++++|+.++++|++|||++..|..||
T Consensus 260 e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf 339 (567)
T KOG1195|consen 260 EKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHF 339 (567)
T ss_pred HHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHH
Confidence 88999999999999889999999999985443 357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 010043 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (519)
Q Consensus 354 ~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~ 433 (519)
.++|.+++++|+ +|+.+++||.||+|.| ||||+|+++.++|+++++.+.|++.|...... +....+.++
T Consensus 340 ~~lf~ilk~mg~-----~~a~~~qHV~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s~~t~-~~~~~~~~~ 408 (567)
T KOG1195|consen 340 CQLFEILKKMGF-----DWAKKLQHVNFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMASNKTK-PVQMANPDE 408 (567)
T ss_pred HHHHHHHHHhCc-----hhhhhcceeccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHhccCC-CCCCCCHHH
Confidence 999999999999 5788999999999986 99999999999999999999999999876332 566678899
Q ss_pred HHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhC-CChhhhhhcC-CCCCCHHhHHHH
Q 010043 434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG-KDIEELKKVG-LVFEVEALTMFQ 511 (519)
Q Consensus 434 ~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~silrka~-~~~~~~~~~~-~~l~~~~e~~l~ 511 (519)
+|+.+|+.||.+.+++..+.++|.|+|+.+.+++|+|||||||+|+|+.||+||.+ .+...+...+ +.|++|.-..|+
T Consensus 409 vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv 488 (567)
T KOG1195|consen 409 VADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLV 488 (567)
T ss_pred HHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986 5666666677 889999977777
Q ss_pred hhcc
Q 010043 512 RLSF 515 (519)
Q Consensus 512 ~~~~ 515 (519)
++.+
T Consensus 489 ~~L~ 492 (567)
T KOG1195|consen 489 RLLL 492 (567)
T ss_pred HHHh
Confidence 7654
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=1.2e-77 Score=623.45 Aligned_cols=340 Identities=38% Similarity=0.583 Sum_probs=283.3
Q ss_pred HHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH
Q 010043 110 IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 189 (519)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~ 189 (519)
|.+++.++..+....+++++|+||||||||||||||||+||+||||+|||||+++||+|+++||+||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 45667777665334578999999999999999999999999999999999999999999999999999999999997765
Q ss_pred hhCCCCCccccccHHHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010043 190 EKFPNSEDANETAIGELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 262 (519)
Q Consensus 190 ~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~-------~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~ 262 (519)
....+. .....++.++.+.|...+..... .+++.+++++.+.++|+|+++..+.|++ .+++..+++|++
T Consensus 82 ~~~~~~-~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~---~~~~~~k~~l~~ 157 (354)
T PF00750_consen 82 KFGDEE-LLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQK---YILEWSKETLQR 157 (354)
T ss_dssp HHHHHH-TSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHH---HHHHHHHHHHHH
T ss_pred hhhhhh-hcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHH---HHHHHHHHHHHH
Confidence 432211 11346788888888877654322 2348899999999999999998889876 245556678999
Q ss_pred cCCcee-ee--ccccccCcHHHHHHHHHHCCCeEeecCeEEEEec--CCCCCeEEEcCCCCccccchhHHHHHhhhhhcC
Q 010043 263 LRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEK 337 (519)
Q Consensus 263 Lgi~fd-~~--~es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~ 337 (519)
|++.|| |+ +|++|.+.++++++.|+++|+++++|||+|++++ |+++|+||+|||||+||+|+|||||++|+..++
T Consensus 158 l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~ 237 (354)
T PF00750_consen 158 LYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYG 237 (354)
T ss_dssp TT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS
T ss_pred HHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhc
Confidence 999986 55 7788999999999999999999999999999998 888999999999999999999999999998899
Q ss_pred CCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-ceeeecCCcccHHHHHHHHHHHHHHH
Q 010043 338 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSKAV 416 (519)
Q Consensus 338 ~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~~v~l~dll~e~~~~a~~~ 416 (519)
+|++|||+|++|+.||+|+++++++||+.+ .+.++.|++||+|++++|+ |||||+|++|+|+|||+++.++|.+
T Consensus 238 ~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~----~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~- 312 (354)
T PF00750_consen 238 FDKIIYVVGADQKGHFKQLFAILEALGYDP----EAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE- 312 (354)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT-HH----HHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH-
T ss_pred cccEEEEecCchhhHHHHHHHHHHHhCCCC----CCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999842 3678999999999999998 9999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccH
Q 010043 417 LIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 460 (519)
Q Consensus 417 i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~ 460 (519)
+.++.+ ++++++.+++|++||++||||++|+.+|.++|+|||
T Consensus 313 ~~~~~~--~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 IMEKNP--DLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHT--TCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHhccc--CCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 666643 388999999999999999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=2.2e-54 Score=419.31 Aligned_cols=209 Identities=36% Similarity=0.551 Sum_probs=193.9
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+|+||||||||+||+||||+|++++||+|+|+|+++||+|.++||+||||.|++.++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999999775321
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELS 287 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es~~~~~v~~vi~~L~ 287 (519)
..|+++++.+.+.|+++|++|||.|| |.+||.+.+.+.++++.|.
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~ 106 (212)
T cd00671 61 ----------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLE 106 (212)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHH
Confidence 11788999999999999999999996 7788888888999999999
Q ss_pred HCCCeEeecCeEEEEec--CCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCC
Q 010043 288 KQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (519)
Q Consensus 288 ~~g~~~~~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~ 365 (519)
++|++|+.+|++|++++ ++.+|+||+||||++||.|+||||+++|+. +++|++|||+|++|..||++++.++++||+
T Consensus 107 ~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 107 ELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred HCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999987 356799999999999999999999999995 899999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEeEEEEcCCCcceeeecC
Q 010043 366 LSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (519)
Q Consensus 366 ~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G 397 (519)
. .++++.|++||+|.+++|+|||||+|
T Consensus 186 ~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 D-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred C-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 4 24689999999999988999999998
No 10
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=4e-31 Score=284.83 Aligned_cols=270 Identities=16% Similarity=0.076 Sum_probs=210.5
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|-++.|+|+|+++.||||+|+.|..|+|+|+|++.||+|..+..++|.|..|-.-+
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A-------------------- 136 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARA-------------------- 136 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHH--------------------
Confidence 467899999999999999999999999999999999999999999999999765432111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eee-ccccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~-~es~~~~~v~~vi 283 (519)
.+ +| ..|+++++.+.+.|.+++++|||.. +.. ..+.|.+.+.+++
T Consensus 137 --------~~--------------------~g-----~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i 183 (557)
T PLN02946 137 --------NE--------------------LG-----EDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMI 183 (557)
T ss_pred --------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHH
Confidence 10 11 1245678888899999999999985 333 3467778899999
Q ss_pred HHHHHCCCeEeecCeEEEEec------------------C----------CCCCeEEEcC--CCCccccchh----HHHH
Q 010043 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAAL 329 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D----iA~~ 329 (519)
++|.++|++|+.+|.+||++. | +..||+|||. .|.+.|-+++ .+||
T Consensus 184 ~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWH 263 (557)
T PLN02946 184 KQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWH 263 (557)
T ss_pred HHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHH
Confidence 999999999999999999874 1 1147999984 6778888876 4556
Q ss_pred Hhhhh----hcCCCeEEEEecCCccccHHH---HHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCccc
Q 010043 330 WYRLN----EEKAEWIIYVTDVGQQLHFDM---VFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (519)
Q Consensus 330 ~~r~~----~~~~d~~I~V~g~~q~~hf~~---~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 401 (519)
+.... -.| ..|+|+|.+.++.||. .++..++ .|- +++..|.|. |+|. .+|+|||||.||+++
T Consensus 264 IECSaMs~~~lG--~~~DIH~GG~DL~FPHHENEiAQsea~~g~-----~~a~yW~H~--G~v~-~~G~KMSKSlGN~it 333 (557)
T PLN02946 264 IECSAMSAAYLG--HSFDIHGGGMDLVFPHHENEIAQSCAACCD-----SNISYWIHN--GFVT-VDSEKMSKSLGNFFT 333 (557)
T ss_pred HHHHHHHHHHcC--CCeeEeccccccCCCcccchHHHHHHHhCC-----CCCceeeEe--eEEE-eCCCCcCCcCCCcCC
Confidence 55421 123 2356777776665553 3333343 354 456789996 7787 579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHH
Q 010043 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (519)
Q Consensus 402 l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~ 481 (519)
++|++++ ++++++||++|+.+++++++|+++.+... .++--|+||+++|+
T Consensus 334 l~dll~~-----------------------------y~~dalR~~lLs~hyr~~l~fs~e~L~~a-~~~l~~l~~~~~~~ 383 (557)
T PLN02946 334 IRQVIDL-----------------------------YHPLALRLFLLGTHYRSPINYSDVQLESA-SERIFYIYQTLHDC 383 (557)
T ss_pred HHHHHHh-----------------------------cCccceeeeeeccCCCCCcEecHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999987 58899999999999999999999986554 34445999999999
Q ss_pred HHHHHHh
Q 010043 482 CSIIRKS 488 (519)
Q Consensus 482 ~silrka 488 (519)
+++++++
T Consensus 384 ~~~l~~~ 390 (557)
T PLN02946 384 EESLQQH 390 (557)
T ss_pred HHHhhhh
Confidence 9998864
No 11
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.97 E-value=1.3e-28 Score=264.46 Aligned_cols=251 Identities=18% Similarity=0.184 Sum_probs=189.3
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|.+..|+|+|+|++||||+|+.++.|+++|.|+..||+|..+..++|.|..+..-+
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A-------------------- 79 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRA-------------------- 79 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHH--------------------
Confidence 456799999999999999999999999999999999999999999999999766443211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~e-s~~~~~v~~vi 283 (519)
. +.| ..|+++++.+.+.|++++++|||.+ ++++. +.|.+.+.+++
T Consensus 80 --------~--------------------~~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i 126 (463)
T PRK00260 80 --------N--------------------EEG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELI 126 (463)
T ss_pred --------H--------------------HcC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHH
Confidence 0 011 1356788899999999999999965 76543 66777889999
Q ss_pred HHHHHCCCeEeecCeEEEEec-----C-----------------------CCCCeEEEcC--CCCccccchh----HHHH
Q 010043 284 DELSKQGLVEESQGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAAL 329 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D----iA~~ 329 (519)
++|.++|++|+.+|.++|+++ | +..|++|+|. .|.+.|.++. .++|
T Consensus 127 ~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWh 206 (463)
T PRK00260 127 ERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWH 206 (463)
T ss_pred HHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChh
Confidence 999999999999999999874 1 0147999986 5767676653 2334
Q ss_pred Hhh----hhhcCCCeEEEEecCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHH
Q 010043 330 WYR----LNEEKAEWIIYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (519)
Q Consensus 330 ~~r----~~~~~~d~~I~V~g~~q~-~hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 403 (519)
+.. ....|..-=|...|.|+. .|.....+..+ ..| . +++..|.|. |+|. .+|+|||||+||+|++.
T Consensus 207 iecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g-~----p~~~~w~H~--g~v~-~~G~KMSKS~GN~i~~~ 278 (463)
T PRK00260 207 IECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATG-K----PFANYWMHN--GFVT-VNGEKMSKSLGNFFTIR 278 (463)
T ss_pred HHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcC-C----CcceEEEEc--cEEc-cCCCcccCcCCCCCCHH
Confidence 332 111233222434455532 24444333333 346 3 577789997 6676 67999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 404 dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
|++++ +|++++||++|+.+++++++|+++.+...
T Consensus 279 dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a 312 (463)
T PRK00260 279 DLLKK-----------------------------YDPEVLRFFLLSAHYRSPLNFSEEALEQA 312 (463)
T ss_pred HHHHH-----------------------------cCchHhHHHHHhCCCCCCCccCHHHHHHH
Confidence 99987 58999999999999999999999976554
No 12
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.96 E-value=2.4e-28 Score=262.14 Aligned_cols=265 Identities=18% Similarity=0.187 Sum_probs=199.6
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|.+..|+|+|++++||||+|+.+..|+++|.|+..||+|..+..++|.|..+-.-+
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A-------------------- 77 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRA-------------------- 77 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHH--------------------
Confidence 456899999999999999999999999999999999999999999999999876443211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-e-ccccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-K-GESFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~-~es~~~~~v~~vi 283 (519)
. ++|- .++++++.+.+.|.++|++|||.++. . ..+.|.+.+.+++
T Consensus 78 --------~--------------------~~g~-----~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i 124 (465)
T TIGR00435 78 --------R--------------------ENGE-----SVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFI 124 (465)
T ss_pred --------H--------------------HcCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHH
Confidence 0 0010 12467888899999999999999953 3 4577788899999
Q ss_pred HHHHHCCCeEeec-CeEEEEec------------------C----------CCCCeEEEcC--CCCccccchh-------
Q 010043 284 DELSKQGLVEESQ-GARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD------- 325 (519)
Q Consensus 284 ~~L~~~g~~~~~d-Ga~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D------- 325 (519)
++|.++|++|+.+ |++||++. | +..|++|+|+ .|.+.|.+++
T Consensus 125 ~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgW 204 (465)
T TIGR00435 125 EQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGW 204 (465)
T ss_pred HHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCc
Confidence 9999999999998 99999864 1 0147999984 5667676643
Q ss_pred ---HHHHHhhhhhcCCCeEEEEecCCcc-ccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcc
Q 010043 326 ---LAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (519)
Q Consensus 326 ---iA~~~~r~~~~~~d~~I~V~g~~q~-~hf~~~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 400 (519)
|++..+++ .|..--|...|.|+. .|........++ .|. +++..|.|. |+|. .+|+|||||+||+|
T Consensus 205 hiecsam~~~~--lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-----~~~~~~~h~--g~v~-~~g~KMSKS~GN~i 274 (465)
T TIGR00435 205 HIECSAMNDKY--LGDQIDIHGGGVDLIFPHHENEIAQSEAAFGK-----QLAKYWMHN--GFLM-IDNEKMSKSLGNFF 274 (465)
T ss_pred HhHHHHHHHHh--cCCCceeeccccccccchHHHHHHHHHHhcCC-----CCCcEEEEe--eEEE-ecCccccccCCCcC
Confidence 33333444 233222455666653 355555455444 453 467788995 7787 57899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHH
Q 010043 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 480 (519)
Q Consensus 401 ~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR 480 (519)
+++|++++ +|++++||++|+.+++++++|+++.+.+.. +.--.+.-++.+
T Consensus 275 ~~~dll~~-----------------------------~~~dalR~~ll~~~~~~~l~fs~~~l~~a~-~~~~rl~~~~~~ 324 (465)
T TIGR00435 275 TVRDVLKN-----------------------------YDPEILRYFLLSVHYRSPLDFSEELLEAAK-NALERLYKALRV 324 (465)
T ss_pred CHHHHHHH-----------------------------CCHHHHHHHHHhCCCCCCCccCHHHHHHHH-HHHHHHHHHHHH
Confidence 99999997 589999999999999999999999876654 222345555555
Q ss_pred HHH
Q 010043 481 ICS 483 (519)
Q Consensus 481 ~~s 483 (519)
+..
T Consensus 325 ~~~ 327 (465)
T TIGR00435 325 LDT 327 (465)
T ss_pred HHh
Confidence 543
No 13
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.8e-29 Score=260.00 Aligned_cols=256 Identities=18% Similarity=0.199 Sum_probs=198.1
Q ss_pred CCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCcccc
Q 010043 121 WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANE 200 (519)
Q Consensus 121 ~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~ 200 (519)
+.|. .+.+|-++.|+|+|+...||||+|+.|..|+|.|+|++.||.|..+.+|+|. +
T Consensus 15 F~P~-~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----------------------D 71 (464)
T COG0215 15 FVPI-DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----------------------D 71 (464)
T ss_pred ccCC-CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----------------------c
Confidence 4443 3455999999999999999999999999999999999999999999999992 2
Q ss_pred ccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCc
Q 010043 201 TAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPY 278 (519)
Q Consensus 201 ~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~e-s~~~~~ 278 (519)
++| ..++.+ +|- .|+++.+.+...|.++++.|||.. +..+. +.|.+.
T Consensus 72 DKI------i~rA~~--------------------~g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~ 120 (464)
T COG0215 72 DKI------INRARE--------------------EGL-----SIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120 (464)
T ss_pred HHH------HHHHHH--------------------hCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHH
Confidence 322 222221 121 467889999999999999999964 65544 777778
Q ss_pred HHHHHHHHHHCCCeEee-cCeEEEEec---------C--------------------CCCCeEEEcC--CCCccccchh-
Q 010043 279 IPGVIDELSKQGLVEES-QGARVIFIE---------G--------------------VNIPLIIVKS--DGGFNYASTD- 325 (519)
Q Consensus 279 v~~vi~~L~~~g~~~~~-dGa~~~~~~---------g--------------------~~~d~Vl~ks--DG~~tY~t~D- 325 (519)
+.++|++|.++|++|+. +|.++|++. + +..|+||||+ -|.|.|-+++
T Consensus 121 iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG 200 (464)
T COG0215 121 IIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWG 200 (464)
T ss_pred HHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCC
Confidence 89999999999999997 789999874 1 1247999995 6788898876
Q ss_pred ---HHHHHhhhh--hcCCCeEEEEecCCccccHHH---HHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec
Q 010043 326 ---LAALWYRLN--EEKAEWIIYVTDVGQQLHFDM---VFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (519)
Q Consensus 326 ---iA~~~~r~~--~~~~d~~I~V~g~~q~~hf~~---~~~i~~~l-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 396 (519)
.++|+.... ..-....|+|+|.+.++-||. -.+.++++ |-. +++..|+|. |||. -+|+|||||.
T Consensus 201 ~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~----~~a~yWmH~--G~l~-i~geKMSKSL 273 (464)
T COG0215 201 KGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVK----PFAKYWMHN--GFLN-IDGEKMSKSL 273 (464)
T ss_pred CCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCC----cceeEeEEc--ceee-ecCcCccccc
Confidence 456665421 111223356777777666663 33444444 422 578899999 5576 5689999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 397 SEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 397 G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
||++|+.|+|++ +.+.++|||+|+.++++|++|+.+.+.+.
T Consensus 274 GNfiti~d~l~~-----------------------------~~p~~lR~~lls~HYR~pl~fsee~L~~A 314 (464)
T COG0215 274 GNFITVRDLLKK-----------------------------YDPEVLRLFLLSSHYRSPLDFSEELLEEA 314 (464)
T ss_pred CCeeEHHHHHhh-----------------------------cCHHHHHHHHHHHHhCCccccCHHHHHHH
Confidence 999999999998 47889999999999999999999987654
No 14
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=6.9e-28 Score=256.16 Aligned_cols=261 Identities=18% Similarity=0.174 Sum_probs=193.9
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++|-++.|+|+|+.+.||||+|+.|..|+|+|.|+..||+|..+..|+|.|+..+. ..-+++.|.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~------------~D~gddKIi--- 84 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGD------------FDDGEDKVV--- 84 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCC------------ccCCCcHHH---
Confidence 58999999999999999999999999999999999999999999999999874331 011234332
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eec-cccccCcHHHHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKG-ESFYNPYIPGVIDE 285 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~-es~~~~~v~~vi~~ 285 (519)
.++. ++|- .|+++++.+...|.+++++|||.++ +.+ .+.+.+.+.++++.
T Consensus 85 ---~~A~--------------------~~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~ 136 (481)
T PRK14534 85 ---KAAR--------------------ERGL-----TVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKV 136 (481)
T ss_pred ---HHHH--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHH
Confidence 1111 1121 2457889999999999999999984 433 36666789999999
Q ss_pred HHHCCCeEeecCeEEEEec---------C---------------------CCCCeEEEc-----CCCCccccchh----H
Q 010043 286 LSKQGLVEESQGARVIFIE---------G---------------------VNIPLIIVK-----SDGGFNYASTD----L 326 (519)
Q Consensus 286 L~~~g~~~~~dGa~~~~~~---------g---------------------~~~d~Vl~k-----sDG~~tY~t~D----i 326 (519)
|.++|++|+.+|.+||++. | +..|++|+| ++|.++|-+++ .
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 9999999999999999764 0 014789997 47778888865 3
Q ss_pred HHHHhhh----hhcCCCeEEEEecCCcc-ccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcc
Q 010043 327 AALWYRL----NEEKAEWIIYVTDVGQQ-LHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (519)
Q Consensus 327 A~~~~r~----~~~~~d~~I~V~g~~q~-~hf~~~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 400 (519)
++|+... +.++...-|+..|.|+. .|.....+.+++ .|. +++..|.|. |+|+ -+|+|||||.||++
T Consensus 217 gWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~-----~~~~~W~H~--g~l~-~~g~KMSKSlGN~i 288 (481)
T PRK14534 217 SWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNK-----KWCDMFVHG--EFLI-MEYEKMSKSNNNFI 288 (481)
T ss_pred cHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcCC-----CcceEEEEe--cEEE-ecCceecccCCCcc
Confidence 4554431 12343323444444432 233334444444 354 567899999 5566 35889999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhccc
Q 010043 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 467 (519)
Q Consensus 401 ~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~ 467 (519)
+++||++++ ++++++||++|+.+++++++|+++.+.+..
T Consensus 289 ~l~dll~~~----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~ 327 (481)
T PRK14534 289 TIKDLEDQG----------------------------FSPLDFRYFCLTAHYRTQLKFTFNNLKACK 327 (481)
T ss_pred cHHHHHhcC----------------------------CChhHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 999999874 357899999999999999999999987763
No 15
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=6.6e-28 Score=257.51 Aligned_cols=276 Identities=16% Similarity=0.139 Sum_probs=201.3
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|-++.|+|+|+++.||||+|+.|..|+|+|+|++.||+|..+..|+|.|+..+- ...+++.|.
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~------------~De~ddKii- 86 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDD------------ADSGEDKMV- 86 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC------------CcCCChHHH-
Confidence 4568999999999999999999999999999999999999999999999998863320 011233321
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeec-cccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~-es~~~~~v~~vi 283 (519)
.+ |+ +.|- .++++++.+.+.|.+++++|||.+ ++.+ .+.|.+.+.+++
T Consensus 87 -----~~--------------A~------~~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i 136 (490)
T PRK14536 87 -----KS--------------AQ------EHGK-----SVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALI 136 (490)
T ss_pred -----HH--------------HH------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHH
Confidence 11 11 1121 245788999999999999999998 5543 366777899999
Q ss_pred HHHHHCCCeEeecCeEEEEec------------------C----------CCCCeEEEcC----CC-Cccccchh----H
Q 010043 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS----DG-GFNYASTD----L 326 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~Vl~ks----DG-~~tY~t~D----i 326 (519)
++|.++|++|+.+|.+||++. | +..|++|||. .| .+.|-+++ .
T Consensus 137 ~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRP 216 (490)
T PRK14536 137 KRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYP 216 (490)
T ss_pred HHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCC
Confidence 999999999999999999873 1 1147899864 22 36677754 2
Q ss_pred HHHHhhhh----hcCCCeEEEEecCCccccHH---HHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCC
Q 010043 327 AALWYRLN----EEKAEWIIYVTDVGQQLHFD---MVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 398 (519)
Q Consensus 327 A~~~~r~~----~~~~d~~I~V~g~~q~~hf~---~~~~i~~~l-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~ 398 (519)
++|+.... -.|.. ++|+|.+.+..|+ ...+.++++ |. +++..|.|. |++. .+|+|||||.||
T Consensus 217 GWHIECsaMs~~~lg~~--~DIH~GG~DliFPHHeneiAqs~a~~g~-----~~~~~w~h~--g~l~-~~g~KMSKSlGN 286 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQ--CDIHIGGVDHIRVHHTNEIAQCEAATGK-----PWVRYWLHH--EFLL-MNKGKMSKSAGQ 286 (490)
T ss_pred ChHHHHHHHHHHHcCCc--eeEEeccccCCCcchhhHHHHHHHhcCC-----CcceEEEEc--CEEe-ecCccccccCCC
Confidence 34544321 12333 3556655555444 333444443 44 577899998 4565 568899999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHH
Q 010043 399 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 478 (519)
Q Consensus 399 ~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~ 478 (519)
+++++||++++ ++++++||++|+.+++++++|+++.+.+... +--.++.++
T Consensus 287 ~itl~dll~~g----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~-~~~rl~~~~ 337 (490)
T PRK14536 287 FLTLSSLQEKG----------------------------FQPLDYRFFLLGGHYRSQLAFSWEALKTAKA-ARRSLVRRV 337 (490)
T ss_pred cccHHHHHhcC----------------------------CCHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 99999999974 4678999999999999999999999877533 222556666
Q ss_pred HHHHH
Q 010043 479 ARICS 483 (519)
Q Consensus 479 aR~~s 483 (519)
.++..
T Consensus 338 ~~~~~ 342 (490)
T PRK14536 338 ARVVD 342 (490)
T ss_pred HHHHH
Confidence 66543
No 16
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.96 E-value=1.5e-27 Score=264.11 Aligned_cols=273 Identities=17% Similarity=0.181 Sum_probs=205.6
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHH-HCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~-~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
.+++|-++.|+|+++...||||+|++|..|+|+|+|+ +.||+|..+..++|.|-.|
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKI----------------------- 113 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKI----------------------- 113 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHH-----------------------
Confidence 5678999999999999999999999999999999999 9999999999999964422
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeec-cccccCcHHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGV 282 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~-es~~~~~v~~v 282 (519)
..++.+ +| +..|.++++.+...|.+++++|||.. ++.+ -+.|.+.+.++
T Consensus 114 -----i~~A~~--------------------~g----~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~ 164 (651)
T PTZ00399 114 -----IKRARE--------------------EK----LSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDF 164 (651)
T ss_pred -----HHHHHH--------------------hC----CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHH
Confidence 111111 01 01245678888899999999999997 5443 36777789999
Q ss_pred HHHHHHCCCeEeecCeEEEEecCC-------------------------------------CCCeEEEcC--CCCccccc
Q 010043 283 IDELSKQGLVEESQGARVIFIEGV-------------------------------------NIPLIIVKS--DGGFNYAS 323 (519)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~~~~g~-------------------------------------~~d~Vl~ks--DG~~tY~t 323 (519)
++.|.++|++|+.+|.+||++... ..|++|||. .|.|.|.+
T Consensus 165 i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~S 244 (651)
T PTZ00399 165 IQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDS 244 (651)
T ss_pred HHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCC
Confidence 999999999999999999976410 024556653 35555665
Q ss_pred hh----HHHHHhhh----hhcCCCeEEEEecCCccccHHH---HHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcc
Q 010043 324 TD----LAALWYRL----NEEKAEWIIYVTDVGQQLHFDM---VFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKR 391 (519)
Q Consensus 324 ~D----iA~~~~r~----~~~~~d~~I~V~g~~q~~hf~~---~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~k 391 (519)
+. .+||+... ...++ .++|++.+.++.||+ -.+..++ .|-. +++..|.|.+| |. -+|+|
T Consensus 245 pwG~GrPGWHiECsam~~~~lg~--~~DIh~gG~DL~FPHHeNEiAQseA~~~~~----~~v~y~~H~G~--L~-i~G~K 315 (651)
T PTZ00399 245 PWGKGRPGWHIECSAMASNILGD--PIDIHSGGIDLKFPHHDNELAQSEAYFDKH----QWVNYFLHSGH--LH-IKGLK 315 (651)
T ss_pred CCCCCCCCchHHHHHHHHHHcCC--cceeeccCCCCCCCcchhHHHHHHHhhCCC----CCCcEEEEEEE--EE-eccch
Confidence 43 22232211 11233 356666666665554 3333343 3432 57789999954 65 46889
Q ss_pred eeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCch
Q 010043 392 LRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTA 471 (519)
Q Consensus 392 mSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~ 471 (519)
||||.||+|+++|+|++ +|++++||++|+.+++++++|+++.+.+..+...
T Consensus 316 MSKSLGNfItp~dlLek-----------------------------ygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~ 366 (651)
T PTZ00399 316 MSKSLKNFITIRQALSK-----------------------------YTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDK 366 (651)
T ss_pred hhhcCCCcccHHHHHHH-----------------------------cChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999997 5899999999999999999999999988777667
Q ss_pred hHHHHHHHHHHHHHHHhC
Q 010043 472 VYLLYAHARICSIIRKSG 489 (519)
Q Consensus 472 ~YiqYa~aR~~silrka~ 489 (519)
+|.+| ++|+++++++..
T Consensus 367 ~l~n~-~~rl~s~l~~~~ 383 (651)
T PTZ00399 367 VFFNF-FANVKIKLRESE 383 (651)
T ss_pred HHHHH-HHHHHHHHhhcc
Confidence 79998 999999998643
No 17
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.96 E-value=1.7e-27 Score=237.42 Aligned_cols=248 Identities=20% Similarity=0.230 Sum_probs=171.2
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
..+++|-+..|+|+|+...||||+|+.|.-|+|.|+|++.||+|..+..|+|. ++.
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDi----------------------DDK-- 59 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDI----------------------DDK-- 59 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-S----------------------SHH--
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecccc----------------------chH--
Confidence 46789999999999999999999999999999999999999999999999994 232
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeec-cccccCcHHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGV 282 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~-es~~~~~v~~v 282 (519)
+..++.+ +| ..|+++++.+.+.|.+++++|||.- +..+ -|.+.+.+.+.
T Consensus 60 ----ii~~A~~--------------------~g-----~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~ 110 (300)
T PF01406_consen 60 ----IIKRARE--------------------EG-----VSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIEL 110 (300)
T ss_dssp ----HHHHHHH--------------------TT-----S-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHH
T ss_pred ----HHHHHHh--------------------cc-----CCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHH
Confidence 2222221 12 1367788999999999999999986 5433 36677788999
Q ss_pred HHHHHHCCCeEeec-CeEEEEec-----C-----------------------CCCCeEEEcC--CCCccccchh----HH
Q 010043 283 IDELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LA 327 (519)
Q Consensus 283 i~~L~~~g~~~~~d-Ga~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D----iA 327 (519)
++.|.++|++|+.+ |.++|+++ | +..|++|+|. .|.+.|-++. .+
T Consensus 111 i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 111 IEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp HHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred HHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 99999999999998 99999874 1 1248999985 4667777754 23
Q ss_pred HHH------hhhhhcCCCeEEEEecCCccccHH---HHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecC
Q 010043 328 ALW------YRLNEEKAEWIIYVTDVGQQLHFD---MVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (519)
Q Consensus 328 ~~~------~r~~~~~~d~~I~V~g~~q~~hf~---~~~~i~~~l-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G 397 (519)
+|+ .++ +|.. |+|.|.+.++.|| ...+.++++ |- +++..|.|. |+|.. +|+|||||.|
T Consensus 191 WHiECsam~~~~--lG~~--~DIH~GG~DL~FPHHENEiAqs~a~~g~-----~~a~~W~H~--g~l~~-~g~KMSKSlg 258 (300)
T PF01406_consen 191 WHIECSAMSMKY--LGDT--FDIHGGGIDLIFPHHENEIAQSEAATGK-----PFANYWMHN--GHLNV-DGEKMSKSLG 258 (300)
T ss_dssp HHHHHHHHHHHH--HTTS--EEEEEEEGGGTTTHHHHHHHHHHHHHSS------SEEEEEEE----EEE-TTCE--TTTT
T ss_pred eeeehHHHHHHH--cCCC--ceEEccccccCCCCccchHHHHHHhhCc-----hHHHHHHHH--HHHhh-cCccccccCC
Confidence 443 333 3433 5666666655555 444555555 52 678999999 66764 6889999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 398 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 398 ~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
|+++++|+++. ..++++||++|+.+++++++|+++.+.+.
T Consensus 259 N~~~i~dll~~-----------------------------~~~~~lR~~~l~~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 259 NFITIRDLLKK-----------------------------YSPDALRLFLLSTHYRKPLNFSEENLEEA 298 (300)
T ss_dssp ---BHHHHHTT-----------------------------S-HHHHHHHHHTS-TTS-EEE-HHHHHHH
T ss_pred CEEEHHHHhhc-----------------------------CCHHHHHHHHhcCCCCCccccCHHHHHHh
Confidence 99999999876 47899999999999999999999987653
No 18
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.7e-26 Score=240.17 Aligned_cols=252 Identities=15% Similarity=0.126 Sum_probs=187.3
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
..|++|-+..|+|+|++++||||+|++|..|+|+|.|+..||+|..+..++|.|..|-.-+.
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~------------------ 66 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAA------------------ 66 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHH------------------
Confidence 34558999999999999999999999999999999999999999999999998775532221
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCc-eee-eccccccCcHHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEE-KGESFYNPYIPGV 282 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-fd~-~~es~~~~~v~~v 282 (519)
++|- .++++++.+.+.|.+++++|||. ++. ..-+.+.+.+.++
T Consensus 67 ------------------------------~~G~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~ 111 (384)
T PRK12418 67 ------------------------------RDGV-----DWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVEL 111 (384)
T ss_pred ------------------------------HcCC-----CHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHH
Confidence 0010 13467788889999999999984 543 3335566789999
Q ss_pred HHHHHHCCCeEeecC----eEEEEec-----C-------------------C--C------CCeEEEcC--CCCccccch
Q 010043 283 IDELSKQGLVEESQG----ARVIFIE-----G-------------------V--N------IPLIIVKS--DGGFNYAST 324 (519)
Q Consensus 283 i~~L~~~g~~~~~dG----a~~~~~~-----g-------------------~--~------~d~Vl~ks--DG~~tY~t~ 324 (519)
+++|.++|++|+.+| .|||++. | + + .||+|+|+ .|.+.|-++
T Consensus 112 i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~sp 191 (384)
T PRK12418 112 VEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSP 191 (384)
T ss_pred HHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCC
Confidence 999999999999888 8999863 1 0 1 36899985 566778776
Q ss_pred h----HHHHHhhh----hhcCCCeEEEEecCCccccHH---HHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcce
Q 010043 325 D----LAALWYRL----NEEKAEWIIYVTDVGQQLHFD---MVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (519)
Q Consensus 325 D----iA~~~~r~----~~~~~d~~I~V~g~~q~~hf~---~~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~km 392 (519)
+ .++|+... ...+. .++|++...+..|+ ...+..++ .|-. +++..|.|. |+|. .+|+||
T Consensus 192 wG~GRPGWHiECsam~~~~lg~--~~DIH~GG~DL~FPHHeneiaq~~a~~g~~----~~~~~w~H~--g~l~-~~G~KM 262 (384)
T PRK12418 192 FGPGRPGWHIECSAIALNRLGS--GFDIQGGGSDLIFPHHEFSAAHAEAATGER----RFARHYVHA--GMIG-LDGEKM 262 (384)
T ss_pred CCCCCChhHHHHHHHHHHHcCC--CcccccCccccccchhHhHHHHHHHhcCCC----CcceEEEEC--CEEC-CCCCcc
Confidence 5 34444431 11232 24555555555444 33333444 3442 577899997 4464 689999
Q ss_pred eeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 393 SkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
|||+||++++.|+++.+ ..+.++||++|+.+++++++|+++.+.+.
T Consensus 263 SKSlGN~i~~~ell~~G----------------------------~d~~~lR~~lls~~yr~~l~fs~e~l~~a 308 (384)
T PRK12418 263 SKSRGNLVFVSRLRAAG----------------------------VDPAAIRLALLAGHYRADREWTDAVLAEA 308 (384)
T ss_pred cCcCCCcCCHHHHHhcc----------------------------CChhheeEEEeccCCCCCcccCHHHHHHH
Confidence 99999999999987542 24558999999999999999999998664
No 19
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=3.6e-26 Score=248.06 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=193.5
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|-++.|+|+|+.+.||||+|+.|..|+|+|.|+..||+|..+..++|.|-.|-.-+
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A-------------------- 304 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARA-------------------- 304 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHH--------------------
Confidence 467899999999999999999999999999999999999999999999999765432211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-ee-ccccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~-~es~~~~~v~~vi 283 (519)
.+ .| ..|+++++.+.+.|.+++++|||..+ +. ..+.+.+.+.+++
T Consensus 305 --------~e--------------------~G-----~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI 351 (699)
T PRK14535 305 --------AE--------------------NG-----ETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMI 351 (699)
T ss_pred --------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHH
Confidence 10 01 11356788888999999999999984 33 3467777899999
Q ss_pred HHHHHCCCeEee-cCeEEEEec-----C-----------------------CCCCeEEEcC--CCCccccchh----HHH
Q 010043 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 328 (519)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D----iA~ 328 (519)
+.|.++|++|+. +|.+||++. | +..|++|||+ .|.|.|-+++ .++
T Consensus 352 ~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGW 431 (699)
T PRK14535 352 ETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGW 431 (699)
T ss_pred HHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCch
Confidence 999999999986 689999874 1 1147999984 5778888865 345
Q ss_pred HHhhhh----hcCCCeEEEEecCCccccHH---HHHHHHHH-cCCCCCC-----------CCCCCcEEEEEeEEEEcCCC
Q 010043 329 LWYRLN----EEKAEWIIYVTDVGQQLHFD---MVFSAAKR-AGWLSAD-----------DSTYPKASHVGFGLVLGEDG 389 (519)
Q Consensus 329 ~~~r~~----~~~~d~~I~V~g~~q~~hf~---~~~~i~~~-lg~~~~~-----------~~~~~~~~Hv~~g~V~~~~g 389 (519)
|+.... ..| ..|+|+|.+.+..|| ...+..++ .|....+ ++++..|+|. |+|. .+|
T Consensus 432 HIECSAMs~~~LG--~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHn--G~V~-vdG 506 (699)
T PRK14535 432 HIECSAMSENLFG--DTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHN--GFIR-VDG 506 (699)
T ss_pred HHHHHHHHHHHcC--CcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEEC--CeEe-eCC
Confidence 544321 123 235677777666555 33444444 3431000 1367789999 6677 579
Q ss_pred cceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 390 KRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 390 ~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
+|||||.||++++.|+++. +|++++||++|+.+++++++|+++.+.+.
T Consensus 507 eKMSKSLGN~it~~dlLe~-----------------------------ygpdalRl~lLsshYRspL~fS~e~Le~A 554 (699)
T PRK14535 507 EKMSKSLGNFFTIREVLKQ-----------------------------YDPEVVRFFILRAHYRSPLNYSDAHLDDA 554 (699)
T ss_pred CccCCCCCCcCCHHHHHHh-----------------------------CCHHHHHHHHHcCCCCCCCCcCHHHHHHH
Confidence 9999999999999999987 58999999999999999999999887664
No 20
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=2.5e-26 Score=239.98 Aligned_cols=250 Identities=17% Similarity=0.129 Sum_probs=188.4
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+++|-+..|+|+|++++||||+|++|..|+|+|+|+..||+|..+..++|.|..|-.-+.
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~-------------------- 93 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAE-------------------- 93 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHH--------------------
Confidence 568999999999999999999999999999999999999999999999998765432211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCc-ee-eeccccccCcHHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LE-EKGESFYNPYIPGVID 284 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-fd-~~~es~~~~~v~~vi~ 284 (519)
+ +| ..++++++.+...|.+++++|||. ++ +..-+.+.+.+.++++
T Consensus 94 --------~--------------------~g-----~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~ 140 (411)
T TIGR03447 94 --------R--------------------DG-----VDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVE 140 (411)
T ss_pred --------H--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHH
Confidence 0 01 013457788889999999999987 44 4344555677999999
Q ss_pred HHHHCCCeEeecC----eEEEEec-----C----------------C-----C------CCeEEEcC--CCCccccchh-
Q 010043 285 ELSKQGLVEESQG----ARVIFIE-----G----------------V-----N------IPLIIVKS--DGGFNYASTD- 325 (519)
Q Consensus 285 ~L~~~g~~~~~dG----a~~~~~~-----g----------------~-----~------~d~Vl~ks--DG~~tY~t~D- 325 (519)
+|.++|++|+.+| .|||++. | . + .|++|+|+ .|.+.|-+++
T Consensus 141 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG 220 (411)
T TIGR03447 141 KLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFG 220 (411)
T ss_pred HHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCC
Confidence 9999999999887 8999863 1 0 1 37899984 5677787765
Q ss_pred ---HHHHHhhh----hhcCCCeEEEEecCCccccHHHH---HHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceee
Q 010043 326 ---LAALWYRL----NEEKAEWIIYVTDVGQQLHFDMV---FSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (519)
Q Consensus 326 ---iA~~~~r~----~~~~~d~~I~V~g~~q~~hf~~~---~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSk 394 (519)
.++|+... ...+. .|+|++...+..|+.+ ....++ .|-. +++..|.|. |+|. .+|+||||
T Consensus 221 ~GRPGWHiECsam~~~~lg~--~~Dih~GG~DLifpHheneiaq~~A~~g~~----~~~~~w~H~--g~l~-~~G~KMSK 291 (411)
T TIGR03447 221 PGRPGWHIECSAIATNRLGA--GFDIQGGGSDLIFPHHEFSAAHAEAATGVR----RMARHYVHA--GMIG-LDGEKMSK 291 (411)
T ss_pred CCCChhHHHHHHHHHHHcCC--ceecccCcccccccchHhHHHHHHHhcCCC----CcceEEEEC--CEEC-cCCCCccC
Confidence 34454431 11232 3567766665555532 233333 3442 578899998 5565 67999999
Q ss_pred ecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 395 RFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 395 R~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
|+||+++++|+++.+ .+++++||++++.+++++++|+.+.+.+.
T Consensus 292 SlGN~i~~~dl~~~g----------------------------~dp~~lRl~lls~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 292 SLGNLVFVSKLRAAG----------------------------VDPAAIRLGLLAGHYRQDRDWTDAVLAEA 335 (411)
T ss_pred cCCCCCCHHHHHhcC----------------------------CCcccEEEEEecCCCCCCCccCHHHHHHH
Confidence 999999999987652 35679999999999999999999988765
No 21
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=7.7e-25 Score=239.01 Aligned_cols=269 Identities=18% Similarity=0.174 Sum_probs=193.3
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++++|--+-|+|+|++||||+|+.++.|+++|.++..|++|..+..++|+|..+-.-+.. .+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-----------~g------- 62 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-----------AG------- 62 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-----------cC-------
Confidence 468899999999999999999999999999999999999999999999999866422210 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ecc--ccccCcHHHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPGVID 284 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~e--s~~~~~v~~vi~ 284 (519)
. + ..++++.+...|++++++|||.+|. ... ..+.+.+.++++
T Consensus 63 -----------~------------------~------~~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~ 107 (511)
T PRK11893 63 -----------I------------------S------PQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQ 107 (511)
T ss_pred -----------C------------------C------HHHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHH
Confidence 0 1 1245777888999999999999973 333 336778999999
Q ss_pred HHHHCCCeEeecCeEEE-------------------------------------Eec-----------C-----------
Q 010043 285 ELSKQGLVEESQGARVI-------------------------------------FIE-----------G----------- 305 (519)
Q Consensus 285 ~L~~~g~~~~~dGa~~~-------------------------------------~~~-----------g----------- 305 (519)
+|.++|++|+.++.+++ +++ +
T Consensus 108 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 187 (511)
T PRK11893 108 RLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRR 187 (511)
T ss_pred HHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHH
Confidence 99999999986654333 221 0
Q ss_pred ---------CCCCeEEEcCC---CCc----------cccchhHHHH---Hh---------hhh-hcCCCeEEEEecCCcc
Q 010043 306 ---------VNIPLIIVKSD---GGF----------NYASTDLAAL---WY---------RLN-EEKAEWIIYVTDVGQQ 350 (519)
Q Consensus 306 ---------~~~d~Vl~ksD---G~~----------tY~t~DiA~~---~~---------r~~-~~~~d~~I~V~g~~q~ 350 (519)
...|+.|.|++ |.+ +|+-.=++|. .+ .+. -|..| +++.|.|+.
T Consensus 188 ~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--~~~~G~D~~ 265 (511)
T PRK11893 188 NEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--VHLIGKDIL 265 (511)
T ss_pred HHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--ceEeccccc
Confidence 01244555522 211 2221112211 00 111 13444 467788875
Q ss_pred c-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010043 351 L-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (519)
Q Consensus 351 ~-hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~ 429 (519)
. |.-....++.++|.. .+..+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 266 ~~h~~~~~a~~~a~~~~-----~p~~~~~~--g~v~~-~G~KMSKS~GN~i~~~dll~~--------------------- 316 (511)
T PRK11893 266 RFHAVYWPAFLMAAGLP-----LPKRVFAH--GFLTL-DGEKMSKSLGNVIDPFDLVDE--------------------- 316 (511)
T ss_pred ccchhHHHHHHHhCCCC-----CCCEEEee--ccEEE-CCeeecccCCcEEcHHHHHHH---------------------
Confidence 4 333343555666653 33455554 77875 799999999999999999998
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhc-ccCCchhHHHHHHHHHHHHHHHh
Q 010043 430 ELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKS 488 (519)
Q Consensus 430 e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd~~~~~~-~~gnt~~YiqYa~aR~~silrka 488 (519)
+|++++||++++..+ .++++||++.+.. .+++...+++|.++|+.+++++.
T Consensus 317 --------~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~ 369 (511)
T PRK11893 317 --------YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKN 369 (511)
T ss_pred --------cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999854 8999999999865 56778889999999999999876
No 22
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.92 E-value=1.1e-23 Score=216.14 Aligned_cols=253 Identities=16% Similarity=0.155 Sum_probs=178.7
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
|++|.-..|||+|++||||+|+.++.|+++|.++..||+|.....++|.|..+..-+... .... ..
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~----~~~~-~~--------- 66 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK----GGRK-KK--------- 66 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh----cCcc-cc---------
Confidence 467888999999999999999999999999999999999999999999998876544211 0000 00
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 283 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----es~~~~~v~~vi 283 (519)
..+ ++ +..+.++++++.+.+.|++++++|||.+||.. +..|.+.+.+++
T Consensus 67 ----------~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f 120 (312)
T cd00668 67 ----------TIW------IE----------EFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 (312)
T ss_pred ----------ccc------HH----------HHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHH
Confidence 011 00 11234567789999999999999999998531 234567899999
Q ss_pred HHHHHCCCeEe------ecCeEEEEec------------C----------------CCCCeEEEcC--CCCc-----ccc
Q 010043 284 DELSKQGLVEE------SQGARVIFIE------------G----------------VNIPLIIVKS--DGGF-----NYA 322 (519)
Q Consensus 284 ~~L~~~g~~~~------~dGa~~~~~~------------g----------------~~~d~Vl~ks--DG~~-----tY~ 322 (519)
++|.++|++|+ .+..++++++ + ...|+.|.|. -|.+ +|.
T Consensus 121 ~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~ 200 (312)
T cd00668 121 SRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDV 200 (312)
T ss_pred HHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccc
Confidence 99999999999 5566666653 1 1125566552 2333 222
Q ss_pred --chhHHHHH---hh-----hhh-cCCCeEEEEecCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc
Q 010043 323 --STDLAALW---YR-----LNE-EKAEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (519)
Q Consensus 323 --t~DiA~~~---~r-----~~~-~~~d~~I~V~g~~q~-~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~ 390 (519)
..=++|.. +. +.. +.. -|++.|.||. .|+.....++.+++... +.. .|+..|+|+..+|+
T Consensus 201 Wfds~~~~~~~~~~~~~~~~~~~~~~~--di~~~G~D~~~~h~~~~~~~~~~~~~~~---~~~---~~~~~g~~~~~~g~ 272 (312)
T cd00668 201 WFDSGIGPLGSLGYPEEKEWFKDSYPA--DWHLIGKDILRGWANFWITMLVALFGEI---PPK---NLLVHGFVLDEGGQ 272 (312)
T ss_pred hhhccHHHHHHcCCCccchhhhhcCCc--eEEEEecchhhhHHHHHHHHHHHhcCCC---Ccc---eeEECcEEEcCCCc
Confidence 11111211 10 000 233 4889999998 79998888888887531 222 34445889887779
Q ss_pred ceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccc
Q 010043 391 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTF 458 (519)
Q Consensus 391 kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~F 458 (519)
|||||+||+|+++|++++ +|.+|+||++++.+ +.++.+|
T Consensus 273 KmSKS~gn~v~~~d~~~~-----------------------------~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 273 KMSKSKGNVIDPSDVVEK-----------------------------YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred cccccCCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhcCCccCCCCC
Confidence 999999999999999998 58999999999887 4555544
No 23
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.92 E-value=1.9e-23 Score=215.35 Aligned_cols=259 Identities=18% Similarity=0.247 Sum_probs=177.5
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCC-CccccccHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS-EDANETAIGEL 206 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~-~~~~~~~i~~l 206 (519)
.+++|+ |...|+|++||||+|..+.+|+++|.||..|++|..++..+|+|. +..+-..+ |+. ..+.+.++..+
T Consensus 19 ~~~~v~-tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKvp~~l----~~~~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVVA-SGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKVPPNV----PESYEQYIGMPLSSV 92 (353)
T ss_pred CeEEEe-cCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-ccccccch----hhHHHHhcCccchhc
Confidence 467874 555699999999999999999999999999999999999999976 32211000 100 01112332211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-ccc-cC-cHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NP-YIPGVI 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-s~~-~~-~v~~vi 283 (519)
++|. |- -..+++++...|++.+++|||++++.+. ..| ++ ..+.+.
T Consensus 93 ------------p~p~--------------g~------~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~ 140 (353)
T cd00674 93 ------------PDPF--------------GC------CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENIL 140 (353)
T ss_pred ------------hhhc--------------CC------CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHH
Confidence 1111 11 1246888899999999999999985433 344 43 366777
Q ss_pred HHHHHCCCeEe--------ecCeEEEEec------CCCCCeEE-EcC-CCCccccchhHHH------------HHhhhhh
Q 010043 284 DELSKQGLVEE--------SQGARVIFIE------GVNIPLII-VKS-DGGFNYASTDLAA------------LWYRLNE 335 (519)
Q Consensus 284 ~~L~~~g~~~~--------~dGa~~~~~~------g~~~d~Vl-~ks-DG~~tY~t~DiA~------------~~~r~~~ 335 (519)
..|.+++.+.+ +--.-|+.+. |.....|+ +.. .|+.+|.+. +++ ..||+ .
T Consensus 141 ~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~-d 218 (353)
T cd00674 141 IALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCE-CGHEETVDIRTGRGKLTWRV-D 218 (353)
T ss_pred HHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcC-CCCEEEEeecCCCcccCCCC-C
Confidence 88888776552 1112344332 43222222 222 356777652 221 12333 2
Q ss_pred cCCCe-----EEEEecCCcccc---HHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHH
Q 010043 336 EKAEW-----IIYVTDVGQQLH---FDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (519)
Q Consensus 336 ~~~d~-----~I~V~g~~q~~h---f~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll 406 (519)
|...| -+=++|.||..| |.++..+++ .+|+.+ + .|+.||+|+..+|+|||||+||+|+++|++
T Consensus 219 W~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~------P--~~~~ye~V~l~gg~KMSKSkGnvI~~~dll 290 (353)
T cd00674 219 WPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEP------P--VPVMYEFIGLKGGGKMSSSKGNVITPSDWL 290 (353)
T ss_pred chhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCC------C--eEEEeeeEEeCCCCccCCCCCCcCCHHHHH
Confidence 22222 266899999999 999999998 999852 2 668899999877779999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHH
Q 010043 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQM 463 (519)
Q Consensus 407 ~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~ 463 (519)
++ ++++++||++++.. +.++++||++..
T Consensus 291 ~~-----------------------------~~~dalR~~~l~~~~~~~~i~Fd~~~~ 319 (353)
T cd00674 291 EV-----------------------------APPEVLRYLYARRKNPEKHIGFDLDIL 319 (353)
T ss_pred HH-----------------------------hChHHHHHHHHhCCCCCCCCCcChhHH
Confidence 98 47899999999988 899999999643
No 24
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=1.3e-23 Score=215.49 Aligned_cols=242 Identities=18% Similarity=0.169 Sum_probs=170.4
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
|++|...-|+|+|++||||+|+.+++|+++|.++..|++|.....++|+|..+...+... +
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-----------g-------- 61 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-----------G-------- 61 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc-----------C--------
Confidence 578889999999999999999999999999999999999999999999988765332110 0
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 283 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----es~~~~~v~~vi 283 (519)
. + .+++++.+.+.|++++++|||.+||.. ...+...+++++
T Consensus 62 ----------~------------------~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f 107 (314)
T cd00812 62 ----------R------------------D------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLF 107 (314)
T ss_pred ----------C------------------C------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHH
Confidence 0 1 235678888999999999999998632 123445688889
Q ss_pred HHHHHCCCeEeecCeEEEE---------e--c------------CCCCC---------e-EEEc--CCCCcc------cc
Q 010043 284 DELSKQGLVEESQGARVIF---------I--E------------GVNIP---------L-IIVK--SDGGFN------YA 322 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~---------~--~------------g~~~d---------~-Vl~k--sDG~~t------Y~ 322 (519)
..|.++|++|+.++.+++. + + ...-+ . =+.| .-|++. |.
T Consensus 108 ~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i~~ 187 (314)
T cd00812 108 LKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTMES 187 (314)
T ss_pred HHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCccccccc
Confidence 9999999999988776653 2 1 00000 0 0111 224331 22
Q ss_pred chhH-----HHH----------------Hhhhhhc-CCCeEEEEecCCc---c-ccHHHHHHHHHHcCCCCCCCCCCCcE
Q 010043 323 STDL-----AAL----------------WYRLNEE-KAEWIIYVTDVGQ---Q-LHFDMVFSAAKRAGWLSADDSTYPKA 376 (519)
Q Consensus 323 t~Di-----A~~----------------~~r~~~~-~~d~~I~V~g~~q---~-~hf~~~~~i~~~lg~~~~~~~~~~~~ 376 (519)
..|- .|. ...+..| ..| |+|+|.|| + .|+..+.+++..+|+.. .++..++
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~--~~~~~~~ 263 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--IYIGGKEHAPNHLLYSRFNHKALFDEGLVT--DEPPKGL 263 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--eeecchhHHHHHHHHHHHHHHHHcCccccc--ccCcHHh
Confidence 2221 111 0112222 344 89999998 4 44466777777778510 0122344
Q ss_pred EEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCc
Q 010043 377 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 456 (519)
Q Consensus 377 ~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~ 456 (519)
. .+|+|+. +|+|||||+||+|+++|++++ +|.+|+||++++..+ +++
T Consensus 264 ~--~~g~v~~-~g~KmSkS~Gn~v~~~dll~~-----------------------------~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 264 I--VQGMVLL-EGEKMSKSKGNVVTPDEAIKK-----------------------------YGADAARLYILFAAP-PDA 310 (314)
T ss_pred e--ecceEec-CccccCCcCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCC-cCC
Confidence 4 3588985 688999999999999999998 588999999999988 999
Q ss_pred cccH
Q 010043 457 TFSF 460 (519)
Q Consensus 457 ~Fd~ 460 (519)
+|||
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9997
No 25
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.90 E-value=1.5e-22 Score=222.04 Aligned_cols=267 Identities=19% Similarity=0.232 Sum_probs=183.4
Q ss_pred EEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHH
Q 010043 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 210 (519)
Q Consensus 131 ~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 210 (519)
+|.-+-|||+|++||||+|+.++.|+++|.+|..|++|.....++|.|..+...+.. .+
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-----------~g---------- 60 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-----------EG---------- 60 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----------cC----------
Confidence 567788999999999999999999999999999999999999999998866432210 00
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHHHHHH
Q 010043 211 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 287 (519)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---es~~~~~v~~vi~~L~ 287 (519)
. + ++++++.+.+.|+++|++|||.+|++. ++.|.+.+.+++++|.
T Consensus 61 --------~------------------~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~ 108 (530)
T TIGR00398 61 --------L------------------T------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK 108 (530)
T ss_pred --------C------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 0 1 235788889999999999999997542 4557788999999999
Q ss_pred HCCCeEeecCeEEEEec-----------CC--------------------------------------------------
Q 010043 288 KQGLVEESQGARVIFIE-----------GV-------------------------------------------------- 306 (519)
Q Consensus 288 ~~g~~~~~dGa~~~~~~-----------g~-------------------------------------------------- 306 (519)
++|++|+.++.+++... |.
T Consensus 109 ~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l 188 (530)
T TIGR00398 109 ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRL 188 (530)
T ss_pred HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEh
Confidence 99999987765554321 00
Q ss_pred -----------------------------------CCCeEEEc--C-CCC--------ccccchh--HHHHH---h----
Q 010043 307 -----------------------------------NIPLIIVK--S-DGG--------FNYASTD--LAALW---Y---- 331 (519)
Q Consensus 307 -----------------------------------~~d~Vl~k--s-DG~--------~tY~t~D--iA~~~---~---- 331 (519)
-.|.-|.| . -|. ..|.--| ++|.. +
T Consensus 189 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~ 268 (530)
T TIGR00398 189 SAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGD 268 (530)
T ss_pred HHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCC
Confidence 00000111 0 011 1111111 11110 0
Q ss_pred --hh-hhcCCC---eEEEEecCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHH
Q 010043 332 --RL-NEEKAE---WIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (519)
Q Consensus 332 --r~-~~~~~d---~~I~V~g~~q~~hf~~~~--~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 403 (519)
.+ ..|..+ .++++.|.|... |..++ .++.++|+. ... .|+.+|+|+.+ |+|||||+||+|+++
T Consensus 269 ~~~~~~~w~~~~~~~~v~~~G~Di~~-~h~~~~~a~l~~~~~~-----~~~--~~~~~g~v~~~-g~KmSKS~Gn~i~~~ 339 (530)
T TIGR00398 269 TEDWKKWWNNDEDAELIHFIGKDIVR-FHTIYWPAMLMGLGLP-----LPT--QVFSHGYLTVE-GGKMSKSLGNVVDPS 339 (530)
T ss_pred hhhHHHhCCCCCCceEEEEEecccch-hHHHHHHHHHHhCCCC-----CCC--EEEeeccEEEC-CceecccCCceecHH
Confidence 00 012221 245566666432 22222 455677863 222 44556889866 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhcc-cCCchhHHHHHHHHH
Q 010043 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND-KGNTAVYLLYAHARI 481 (519)
Q Consensus 404 dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~~~~-~gnt~~YiqYa~aR~ 481 (519)
|++++ +|.+++||++++.. ..++++||++.+... +.+..-++++++.|+
T Consensus 340 d~i~~-----------------------------~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~ 390 (530)
T TIGR00398 340 DLLAR-----------------------------FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRT 390 (530)
T ss_pred HHHHH-----------------------------cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 68999999999876 599999999996553 234445899999999
Q ss_pred HHHHHHh
Q 010043 482 CSIIRKS 488 (519)
Q Consensus 482 ~silrka 488 (519)
.+++.+.
T Consensus 391 ~~~~~~~ 397 (530)
T TIGR00398 391 LGFIKKY 397 (530)
T ss_pred HHHHHHh
Confidence 9999874
No 26
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.90 E-value=1e-22 Score=218.44 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=111.5
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||+|+||+|||. +|++++++ ..+++++| +|.||..|+++++.++++||+. .+.+.|+++ ++ +.
T Consensus 172 ~D~Vl~RsdG~ptY~---~A~~vdD~-~~~ithvI--rG~d~~~~t~~~~~l~~aLg~~------~p~~~H~p~-l~-~~ 237 (470)
T TIGR00464 172 DDFVILRSDGSPTYN---FAVVVDDY-LMKITHVI--RGEDHISNTPKQILIYQALGWK------IPVFAHLPM-IL-DE 237 (470)
T ss_pred CCeEEEecCCCcccc---cHHHHHHH-hCCCCEEE--ECchhhcCHHHHHHHHHHcCCC------CCeEEEEee-ee-cC
Confidence 589999999999999 89999998 67999998 9999999999999999999984 478999988 44 57
Q ss_pred CCcceeeecCCcccHHHHHHHHH-HHH-HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAK-NRS-KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~-~~a-~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~ 465 (519)
+|+|||||+| .+++++|++++. ..| .+.+..-|-.+.- ..+... ..++++||+|+..+.+++.|||+++..
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~-~~e~~~-----~~~~i~~f~l~~~~~~~~~fd~~kL~~ 310 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPD-DQEFFS-----LEELIEIFSLNRVSKSPAKFDWKKLQW 310 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCC-ccccCC-----HHHHHHhcCcccCCCCCCeecHHHHHH
Confidence 8999999999 889999999973 334 4444322211100 011111 137899999999999999999999888
Q ss_pred ccC
Q 010043 466 DKG 468 (519)
Q Consensus 466 ~~g 468 (519)
+|+
T Consensus 311 ~N~ 313 (470)
T TIGR00464 311 LNA 313 (470)
T ss_pred HHH
Confidence 864
No 27
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.90 E-value=3e-22 Score=193.84 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=147.9
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.++++-+..|+|.|++++||||+|+.++.|+++|.+|..|++|.....++|.|..+..-+..
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~------------------ 78 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE------------------ 78 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH------------------
Confidence 45778999999999999999999999999999999999999999999999998866533210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeeccccccCcHHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYNPYIPGVID 284 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~es~~~~~v~~vi~ 284 (519)
+| ..++++++...+.|++++++|||.+ |.+...
T Consensus 79 ------------------------------~g-----~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt----------- 112 (213)
T cd00672 79 ------------------------------EG-----LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV----------- 112 (213)
T ss_pred ------------------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------
Confidence 00 0134667888889999999999987 543332
Q ss_pred HHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCcc-ccHHHHHHHHHHc
Q 010043 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKRA 363 (519)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~-~hf~~~~~i~~~l 363 (519)
|..- |++...++....+| |.+.|.|+. .|.........++
T Consensus 113 ------------------------------------Wh~e-c~am~~~~lg~~~d--ih~~G~Dl~fpH~~~~~a~~~a~ 153 (213)
T cd00672 113 ------------------------------------WHIE-CSAMAMKYLGETFD--IHGGGVDLIFPHHENEIAQSEAA 153 (213)
T ss_pred ------------------------------------hhHH-HHHHHHHHcCCCcc--EEeecCCCCcChHHHHHHHHHHH
Confidence 5544 34334444233445 555677663 3555555555543
Q ss_pred -CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhH
Q 010043 364 -GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGA 442 (519)
Q Consensus 364 -g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~a 442 (519)
|- +++..|.|. |+|. .+|+|||||+||+|+++|++++ +|.++
T Consensus 154 ~g~-----~~~~~~~h~--~~v~-~~g~KMSKs~Gn~v~~~dll~~-----------------------------~~~da 196 (213)
T cd00672 154 TGK-----PFARYWLHT--GHLT-IDGEKMSKSLGNFITVRDALKK-----------------------------YDPEV 196 (213)
T ss_pred hCC-----CCCcEEEEE--EEEe-ccCcchhhcCCCccCHHHHHHH-----------------------------cCHHH
Confidence 44 456789998 6676 5788999999999999999987 58999
Q ss_pred HHHHhhcCCCCCCcccc
Q 010043 443 AKYFDLKNNRLTNYTFS 459 (519)
Q Consensus 443 vry~~L~~~~~~~~~Fd 459 (519)
+||++|+.+++++++||
T Consensus 197 ~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 197 LRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHHhCCcCCCCCCC
Confidence 99999999999999997
No 28
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=2.2e-22 Score=216.12 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=109.1
Q ss_pred CCeEEEcCCCCccccchhH-HHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc
Q 010043 308 IPLIIVKSDGGFNYASTDL-AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 386 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~Di-A~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~ 386 (519)
.|+||+||||+|||.++|+ ++|.+++ +++| +|+||..|++++..++++||+. .+.+.|+++ +.+
T Consensus 182 ~D~Vl~RsDG~ptY~~a~vVdD~~~~i-----thvI--rG~d~~~~t~~q~~l~~alG~~------~p~~~H~pl--i~~ 246 (476)
T PRK01406 182 DDFVILRSDGTPTYNFAVVVDDHLMGI-----THVI--RGEDHLSNTPKQILLYEALGWE------VPVFAHLPL--ILG 246 (476)
T ss_pred CCcEEEecCCCccccchHHHHHHHcCC-----CEEE--ECchhhcCHHHHHHHHHHhCCC------CCeEEEeee--eeC
Confidence 5899999999999999988 6666654 8998 9999999999999999999984 478999987 556
Q ss_pred CCCcceeeecCCcccHHHHHHHHH-HH-HHHHHHHhcCCCCCCH--HHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010043 387 EDGKRLRTRFSEVVRLVDLLDEAK-NR-SKAVLIERGKDKEWTE--EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (519)
Q Consensus 387 ~~g~kmSkR~G~~v~l~dll~e~~-~~-a~~~i~~~~~~~~~~~--~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~ 462 (519)
.+|+|||||+| .++++++++++. .. ..+.+..-| |+. .++.. -.+++++|+|++.+.+++.|||++
T Consensus 247 ~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG----~s~~~~e~~~-----~~~~i~~f~l~~~~~s~~~fd~~k 316 (476)
T PRK01406 247 PDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLG----WSHGDQEIFS-----LEELIELFDLERVSKSPARFDIKK 316 (476)
T ss_pred CCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhC----CCCCccccCC-----HHHHHHhcChhhCCCCCccccHHH
Confidence 88999999999 789999999974 22 344443322 221 11111 137899999999999999999999
Q ss_pred HhcccC
Q 010043 463 MLNDKG 468 (519)
Q Consensus 463 ~~~~~g 468 (519)
+.++|+
T Consensus 317 L~~~N~ 322 (476)
T PRK01406 317 LDWLNG 322 (476)
T ss_pred HHHHHH
Confidence 999874
No 29
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.89 E-value=7.2e-22 Score=203.21 Aligned_cols=240 Identities=18% Similarity=0.248 Sum_probs=164.8
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+++|--+-|+|+|++||||+|+.++.|+++|.+|..|++|.....++|.|..+..-+..
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~--------------------- 59 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------------------- 59 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH---------------------
Confidence 46778889999999999999999999999999999999999999999998866533210
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee---ccccccCcHHHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVIDE 285 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~---~es~~~~~v~~vi~~ 285 (519)
.|- ..+++++.+.+.|+++|++|||.||.+ .++.+.+.+.+++++
T Consensus 60 ---------------------------~g~-----~~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~ 107 (319)
T cd00814 60 ---------------------------EGV-----TPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107 (319)
T ss_pred ---------------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHH
Confidence 000 123568889999999999999999732 234567789999999
Q ss_pred HHHCCCeEeec-------------------CeEEEEec------------CC-------------------CCCeEEEcC
Q 010043 286 LSKQGLVEESQ-------------------GARVIFIE------------GV-------------------NIPLIIVKS 315 (519)
Q Consensus 286 L~~~g~~~~~d-------------------Ga~~~~~~------------g~-------------------~~d~Vl~ks 315 (519)
|.++|++|+.+ ..++|+++ +. -.|.-+.|.
T Consensus 108 L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~ 187 (319)
T cd00814 108 LYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRD 187 (319)
T ss_pred HHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999999754 34445542 00 012222221
Q ss_pred -----------CCCccccchh--HHHH------Hhhh-----hhcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCC
Q 010043 316 -----------DGGFNYASTD--LAAL------WYRL-----NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADD 370 (519)
Q Consensus 316 -----------DG~~tY~t~D--iA~~------~~r~-----~~~~~d~~I~V~g~~q~~hf~~~~-~i~~~lg~~~~~~ 370 (519)
.|...|.--| ++|. .++. ...+....+++.|.|+..+..... +++.++|+.
T Consensus 188 ~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~---- 263 (319)
T cd00814 188 LFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLP---- 263 (319)
T ss_pred CcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCC----
Confidence 1222333223 1211 0000 011223578999999865433333 455677864
Q ss_pred CCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcC
Q 010043 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 450 (519)
Q Consensus 371 ~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~ 450 (519)
....+.+ +|+++. +|+|||||+||+|++.|++++ +|++++||++++.
T Consensus 264 -~~~~~~~--~~~~~~-~g~kmSkS~gn~i~~~~~l~~-----------------------------~~~d~~R~~l~~~ 310 (319)
T cd00814 264 -LPTRIVA--HGYLTV-EGKKMSKSRGNVVDPDDLLER-----------------------------YGADALRYYLLRE 310 (319)
T ss_pred -CCcEeee--eeeEEE-CCeeecccCCcccCHHHHHHH-----------------------------cCchHHHHHHHhc
Confidence 2344544 477875 488999999999999999998 5899999999987
Q ss_pred CC-CCCccc
Q 010043 451 NR-LTNYTF 458 (519)
Q Consensus 451 ~~-~~~~~F 458 (519)
.+ .++.+|
T Consensus 311 ~~~~~d~~f 319 (319)
T cd00814 311 RPEGKDSDF 319 (319)
T ss_pred CCCCCCCCC
Confidence 66 444443
No 30
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=3.3e-21 Score=216.41 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=180.9
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++++|.-.-|+|+|++||||+|+.++.|+++|.+|..|++|......+|.|..+...+.. .+
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-----------~g------- 63 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-----------EG------- 63 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-----------cC-------
Confidence 468898888999999999999999999999999999999999999999998876544311 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVID 284 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e---s~~~~~v~~vi~ 284 (519)
. + .+++++.+...|++++++|||.+|++.. ..|...+.++++
T Consensus 64 -----------~------------------~------p~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~ 108 (673)
T PRK00133 64 -----------I------------------T------PEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYL 108 (673)
T ss_pred -----------C------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHH
Confidence 1 1 1246788888999999999999976432 346778999999
Q ss_pred HHHHCCCeEeecCeEEEEec-----------------------CC-----------------------------------
Q 010043 285 ELSKQGLVEESQGARVIFIE-----------------------GV----------------------------------- 306 (519)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~-----------------------g~----------------------------------- 306 (519)
+|.++|++|+.++.+|+... |+
T Consensus 109 ~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f 188 (673)
T PRK00133 109 KLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFF 188 (673)
T ss_pred HHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEE
Confidence 99999999987666655321 00
Q ss_pred -----------------------------------CCCeEEEcC-----------CCCccccchh--HHHHH----h---
Q 010043 307 -----------------------------------NIPLIIVKS-----------DGGFNYASTD--LAALW----Y--- 331 (519)
Q Consensus 307 -----------------------------------~~d~Vl~ks-----------DG~~tY~t~D--iA~~~----~--- 331 (519)
..|.-|.|. +|-+.|.--| ++|.. +
T Consensus 189 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~ 268 (673)
T PRK00133 189 FKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDK 268 (673)
T ss_pred EEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhccc
Confidence 001111110 0111222111 11100 0
Q ss_pred ----hhh-hcCC---CeEEEEecCCccccHHHH--HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCccc
Q 010043 332 ----RLN-EEKA---EWIIYVTDVGQQLHFDMV--FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (519)
Q Consensus 332 ----r~~-~~~~---d~~I~V~g~~q~~hf~~~--~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 401 (519)
.+. .|.. ..+++++|.|-.. |..+ -+++.++|+.. .. ..+..|+|+. +|+|||||+||+|+
T Consensus 269 ~~~~~~~~~w~~~~~~~~v~~iGkDi~~-fH~i~wpa~l~a~g~~l-----P~--~v~~hg~v~~-~G~KMSKS~GNvV~ 339 (673)
T PRK00133 269 RGGLDWDEYWKKDSDTELYHFIGKDIIY-FHTLFWPAMLEGAGYRL-----PT--NVFAHGFLTV-EGAKMSKSRGTFIW 339 (673)
T ss_pred ccchhHHHhcCCCCCceEEEEEeecchh-HHHHHHHHHHHhCCCCC-----CC--EEeeeccEEe-cCCcccccCCcccC
Confidence 000 0111 1235555555322 2221 13456678742 22 2334588987 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCC--CCccccHHHHhc-ccCCch-hHHHHH
Q 010043 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL--TNYTFSFDQMLN-DKGNTA-VYLLYA 477 (519)
Q Consensus 402 l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~--~~~~Fd~~~~~~-~~gnt~-~YiqYa 477 (519)
+.|++++ +|.+++||++++..+. .+.+|||+.+.. .+.+.. .|-+++
T Consensus 340 p~dlie~-----------------------------ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 340 ARTYLDH-----------------------------LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred HHHHHHH-----------------------------cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 6899999999988775 599999999654 233333 277787
Q ss_pred HHHHHHHHHHh
Q 010043 478 HARICSIIRKS 488 (519)
Q Consensus 478 ~aR~~silrka 488 (519)
+ |+++++++.
T Consensus 391 ~-R~~~~~~k~ 400 (673)
T PRK00133 391 S-RTAGFINKR 400 (673)
T ss_pred H-HHHHHHHHh
Confidence 7 999998764
No 31
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.88 E-value=3e-21 Score=199.91 Aligned_cols=256 Identities=18% Similarity=0.198 Sum_probs=168.2
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+..|--.-|||+|++||||+|+.++.|+++|.++..||+|.....++|+|.++..-+.. ..+.. ....+.+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k---~lg~~---~~~~~~~--- 72 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK---ELGIS---GKKDIEK--- 72 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHH---HhCCC---CCcchhh---
Confidence 46777889999999999999999999999999999999999999999999998754421 10100 0000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-----ccccccCcHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-----~es~~~~~v~~vi 283 (519)
+ +..+..+.++++++.+.+.|.+.+++|||.++|. .+..|.+.+.+++
T Consensus 73 --------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f 125 (338)
T cd00818 73 --------M-------------------GIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVF 125 (338)
T ss_pred --------c-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHH
Confidence 0 0012234566788999999999999999976542 2345667899999
Q ss_pred HHHHHCCCeEeecCeEEEEe------------c-----------C-C----------------CCCeEEE----------
Q 010043 284 DELSKQGLVEESQGARVIFI------------E-----------G-V----------------NIPLIIV---------- 313 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~------------~-----------g-~----------------~~d~Vl~---------- 313 (519)
++|.++|++|+.++.+++.+ + . + -.|..+-
T Consensus 126 ~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P 205 (338)
T cd00818 126 KQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIP 205 (338)
T ss_pred HHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceee
Confidence 99999999998777554432 1 0 0 0111111
Q ss_pred ----cCCCC--------cccc--chhHHHH---Hh-----hhhh-cCCCeEEEEecCCccc-cHHHHHHHHH-HcCCCCC
Q 010043 314 ----KSDGG--------FNYA--STDLAAL---WY-----RLNE-EKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSA 368 (519)
Q Consensus 314 ----ksDG~--------~tY~--t~DiA~~---~~-----r~~~-~~~d~~I~V~g~~q~~-hf~~~~~i~~-~lg~~~~ 368 (519)
.++|+ ..|. ..-+.+. -+ .+.. |..| +.+.|.|+.. ||..+.-.+. ..|..
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--~~~~GkDii~~wf~~~~~~~~~~~~~~-- 281 (338)
T cd00818 206 VWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--FILEGSDQTRGWFYSLLLLSTALFGKA-- 281 (338)
T ss_pred EEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--EEeecchHHhHHHHHHHHHHHHhcCCC--
Confidence 12211 2221 1111111 01 1111 3344 5578999864 6776543333 34443
Q ss_pred CCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhh
Q 010043 369 DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 448 (519)
Q Consensus 369 ~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L 448 (519)
+...-+.| |+++..+|+|||||+||+|+++|++++ +|++++||+++
T Consensus 282 --p~~~~~~h---g~~~~~~g~KmSKS~gn~i~~~~~~~~-----------------------------~~~D~~R~~l~ 327 (338)
T cd00818 282 --PYKNVIVH---GFVLDEDGRKMSKSLGNYVDPQEVVDK-----------------------------YGADALRLWVA 327 (338)
T ss_pred --ccceEEEE---eeEECCCCCCCCCCCCCcCCHHHHHHH-----------------------------cCcHHHHHHHH
Confidence 23334444 677777899999999999999999987 59999999999
Q ss_pred cCC-CCCCccc
Q 010043 449 KNN-RLTNYTF 458 (519)
Q Consensus 449 ~~~-~~~~~~F 458 (519)
+.+ ..+++.|
T Consensus 328 ~~~~~~~d~~~ 338 (338)
T cd00818 328 SSDVYAEDLRF 338 (338)
T ss_pred hCCCccCCCCC
Confidence 887 4566544
No 32
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.88 E-value=3.1e-21 Score=203.08 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=99.3
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+++|...-|+|+|++||||+|+.++.|+++|.++..|++|......+|.|..+...+...... ....+.
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-------~~~~~~---- 70 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-------EGKTRH---- 70 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-------cccchh----
Confidence 578889999999999999999999999999999999999999999999999887554321000 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 283 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----es~~~~~v~~vi 283 (519)
+.++ .+.++..+++++.+.+.+++.+++|||.+||.. +..|.+.+++++
T Consensus 71 ---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 124 (382)
T cd00817 71 ---------DLGR-----------------EEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 (382)
T ss_pred ---------cCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHH
Confidence 0011 112234566788889999999999999998631 234556799999
Q ss_pred HHHHHCCCeEeec
Q 010043 284 DELSKQGLVEESQ 296 (519)
Q Consensus 284 ~~L~~~g~~~~~d 296 (519)
.+|.++|++|+.+
T Consensus 125 ~~L~~~G~iy~~~ 137 (382)
T cd00817 125 VRLYEKGLIYRDN 137 (382)
T ss_pred HHHHHCCCEEeee
Confidence 9999999999744
No 33
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.87 E-value=5.7e-22 Score=180.53 Aligned_cols=143 Identities=22% Similarity=0.202 Sum_probs=118.6
Q ss_pred EEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHH
Q 010043 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYR 211 (519)
Q Consensus 132 VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 211 (519)
|++|+|||+|++||||+|+++++|+++|.||..|++|...++++|+|.|++..+...
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 579999999999999999999999999999999999999999999999988554210
Q ss_pred HHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccccCcHHHHHHHHHHCCC
Q 010043 212 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGL 291 (519)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~~~~~v~~vi~~L~~~g~ 291 (519)
-..|+++++.+...|++.|+
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~~------------------------------ 77 (143)
T cd00802 58 ------------------------------GENAKAFVERWIERIKEDVE------------------------------ 77 (143)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 01355667777788887777
Q ss_pred eEeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCC
Q 010043 292 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371 (519)
Q Consensus 292 ~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~ 371 (519)
|.+.++|...++...+ ..|+++|.||..|+++.+.+++++|..
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~----- 120 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP----- 120 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC-----
Confidence 9999999877765322 678999999999999999999999863
Q ss_pred CCCcEEEEEeEEEEcCCCcceeeec
Q 010043 372 TYPKASHVGFGLVLGEDGKRLRTRF 396 (519)
Q Consensus 372 ~~~~~~Hv~~g~V~~~~g~kmSkR~ 396 (519)
.. ..|+.||+|.+.+|+|||||+
T Consensus 121 ~~--p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 121 AR--PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred CC--ceEEEeCCeECCCCCcCCCCC
Confidence 22 356667899988889999985
No 34
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.8e-20 Score=198.69 Aligned_cols=267 Identities=20% Similarity=0.260 Sum_probs=180.7
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++++|--.=|.|+|++||||+++++.+|++||.+|..|++|..+...+++|+.|..-|... +
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~-----------g------ 66 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE-----------G------ 66 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc-----------C------
Confidence 47899999999999999999999999999999999999999999999999999876443210 1
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---es~~~~~v~~vi 283 (519)
.+| +++++...+.++++++.|||+||.+. ++.+.+.+++++
T Consensus 67 ------------~tP------------------------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f 110 (558)
T COG0143 67 ------------ITP------------------------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFF 110 (558)
T ss_pred ------------CCH------------------------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHH
Confidence 111 25677778889999999999998553 344667899999
Q ss_pred HHHHHCCCeEeec--CeEEEEec---------------------CC----------------------------------
Q 010043 284 DELSKQGLVEESQ--GARVIFIE---------------------GV---------------------------------- 306 (519)
Q Consensus 284 ~~L~~~g~~~~~d--Ga~~~~~~---------------------g~---------------------------------- 306 (519)
++|.++|++|..+ |..|...+ ||
T Consensus 111 ~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hy 190 (558)
T COG0143 111 LKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHY 190 (558)
T ss_pred HHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeE
Confidence 9999999998632 32222110 00
Q ss_pred --------------------------------------CCCeEEEc--------------------CCCCccccch--hH
Q 010043 307 --------------------------------------NIPLIIVK--------------------SDGGFNYAST--DL 326 (519)
Q Consensus 307 --------------------------------------~~d~Vl~k--------------------sDG~~tY~t~--Di 326 (519)
..|+-|.| -|.-..|+|. ..
T Consensus 191 Ff~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~ 270 (558)
T COG0143 191 FFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGEL 270 (558)
T ss_pred EEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcch
Confidence 01111222 2222222210 00
Q ss_pred H-----HHHhhhhhcCCC--eEEEEecCCc----cccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeee
Q 010043 327 A-----ALWYRLNEEKAE--WIIYVTDVGQ----QLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTR 395 (519)
Q Consensus 327 A-----~~~~r~~~~~~d--~~I~V~g~~q----~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR 395 (519)
+ --+.++ |..| .+++++|.|- ...++. .+.+.|.. ...++. .-|+++ .+|+|||||
T Consensus 271 ~~~~~~~~~~~~--W~~~~~e~vhfIGKDii~FHav~wPa---mL~~~~~~-----lP~~i~--ahg~l~-~~G~KmSKS 337 (558)
T COG0143 271 AEIGDDEDFKKF--WPADDTELVHFIGKDIIRFHAVYWPA---MLMAAGLP-----LPTRIF--AHGFLT-LEGQKMSKS 337 (558)
T ss_pred hccCChHHHHhh--CCCCCceEEEEeccccCcchhhHHHH---HHHhCCCC-----CCCEEE--eeeeEE-ECCcccccc
Confidence 0 011111 4443 5667777773 223333 34556652 222332 226677 457799999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhcc-cCCchhH
Q 010043 396 FSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLND-KGNTAVY 473 (519)
Q Consensus 396 ~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd~~~~~~~-~gnt~~Y 473 (519)
+||+|...+++++ +|++++||++++..| .++.+|+|+.+.+. |.+-.-=
T Consensus 338 rG~~V~~~~~~~~-----------------------------~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~ 388 (558)
T COG0143 338 RGNVVDPDELLEQ-----------------------------YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANK 388 (558)
T ss_pred CCcEEeHHHHHHH-----------------------------cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998 699999999999887 89999999998774 4332222
Q ss_pred HHHHHHHHHHHHHHh
Q 010043 474 LLYAHARICSIIRKS 488 (519)
Q Consensus 474 iqYa~aR~~silrka 488 (519)
+..=..|+.|...|.
T Consensus 389 lgNl~~R~~~fi~k~ 403 (558)
T COG0143 389 LGNLANRTLGFINKY 403 (558)
T ss_pred HHHHHHHHHHHHHhc
Confidence 222238999987775
No 35
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.4e-21 Score=196.48 Aligned_cols=253 Identities=16% Similarity=0.173 Sum_probs=183.8
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHH-HCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~-~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (519)
..|.+|-.+.|+|+++..-||||+|++|--|+|.|+|+ +.||+|+.+..|+|. ++
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDV----------------------DD-- 106 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDV----------------------DD-- 106 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccch----------------------hH--
Confidence 45778999999999999999999999999999999999 999999999999993 22
Q ss_pred HHHHHHHHHHhcc-cCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHH
Q 010043 204 GELQEFYRRSKNR-FDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIP 280 (519)
Q Consensus 204 ~~l~~~y~~~~~~-~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~e-s~~~~~v~ 280 (519)
+|.+++++. +...| ..|.+.-..+-++|.+++.+|+|-- +.... |.|.+.+-
T Consensus 107 ----KII~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II 161 (586)
T KOG2007|consen 107 ----KIIKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII 161 (586)
T ss_pred ----HHHHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH
Confidence 223333210 11111 2233322256689999999999975 44333 66767788
Q ss_pred HHHHHHHHCCCeEeecCeEEEEec----------CC------------------CCCeEEEcC--CCCccccchh----H
Q 010043 281 GVIDELSKQGLVEESQGARVIFIE----------GV------------------NIPLIIVKS--DGGFNYASTD----L 326 (519)
Q Consensus 281 ~vi~~L~~~g~~~~~dGa~~~~~~----------g~------------------~~d~Vl~ks--DG~~tY~t~D----i 326 (519)
..|+++.++|++|..+|.|+|++. |+ ..|+.|||+ .|.|.|-+++ .
T Consensus 162 ~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRP 241 (586)
T KOG2007|consen 162 KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRP 241 (586)
T ss_pred HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCC
Confidence 889999999999999999999885 10 136788874 7889998875 3
Q ss_pred HHHHhhhh----hcCCCeEEEEecCCccccHHH---HHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCc
Q 010043 327 AALWYRLN----EEKAEWIIYVTDVGQQLHFDM---VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (519)
Q Consensus 327 A~~~~r~~----~~~~d~~I~V~g~~q~~hf~~---~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~ 399 (519)
+||+.... ..|.+ ++|+|.+-++-||. -.+..++. +.. ..|...|.|. |.+.. +|.||||+.+|+
T Consensus 242 GWHIECSaMas~~lG~~--lDIH~GG~DL~FPHHeNEiAQ~eA~-~~~--~~wVnYflHt--GhL~i-~g~KMSKSLkNF 313 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQ--LDIHGGGIDLAFPHHENEIAQSEAA-FDD--SQWVNYFLHT--GHLTI-NGEKMSKSLKNF 313 (586)
T ss_pred CceeeeHHHHHHhhccc--cceecCcccccCCCcccHHHHHHHH-hcC--CccceeEEEc--Ceeee-ccchhhhhhccc
Confidence 45544311 12322 55677766665553 22222322 111 1477889998 56763 578999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHH
Q 010043 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (519)
Q Consensus 400 v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~ 463 (519)
||++|+|+. +.+.++|+++|..+.+++++|+-..|
T Consensus 314 iTIke~Lk~-----------------------------~sp~qLRl~fl~~~wr~~ldYs~s~m 348 (586)
T KOG2007|consen 314 ITIKEALKK-----------------------------YSPRQLRLAFLLHQWRSPLDYSDSTM 348 (586)
T ss_pred eeHHHHHHh-----------------------------cCHHHHHHHHHHHHhcCcCCchHHHH
Confidence 999999987 57889999999999999999998744
No 36
>PLN02224 methionine-tRNA ligase
Probab=99.85 E-value=5.7e-20 Score=202.52 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=96.1
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
+++++++|.-.-|+|+|++||||+|+.+++|+++|.+|..||+|....+++|+|.++..-+.. .+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-----------~g---- 130 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-----------NG---- 130 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----------cC----
Confidence 567889998888999999999999999999999999999999999999999999987643310 00
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee---ccccccCcHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPG 281 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~---~es~~~~~v~~ 281 (519)
.+| .++|+.+...|++.+++|||.+|.+ .+..|...+++
T Consensus 131 --------------~~p------------------------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 131 --------------RNP------------------------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred --------------CCh------------------------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 001 1345666677888999999999743 23456678999
Q ss_pred HHHHHHHCCCeEeec
Q 010043 282 VIDELSKQGLVEESQ 296 (519)
Q Consensus 282 vi~~L~~~g~~~~~d 296 (519)
++.+|.++|++|+.+
T Consensus 173 ~f~~L~~~G~Iy~~~ 187 (616)
T PLN02224 173 FYARVFANGDIYRAD 187 (616)
T ss_pred HHHHHHHCCCEEEee
Confidence 999999999999743
No 37
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=4e-20 Score=207.11 Aligned_cols=267 Identities=19% Similarity=0.196 Sum_probs=174.1
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++++|.-.-|+|+|++||||+|+.++.|+++|.+|..|++|......+|+|..+..-+.. .+
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-----------~g------- 65 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-----------AG------- 65 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-----------cC-------
Confidence 578999999999999999999999999999999999999999999999999866432210 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cc--ccccCcHHHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 284 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-~e--s~~~~~v~~vi~ 284 (519)
.+ .+++++.+.+.|++++++|||+||++ ++ ..+.+.++++++
T Consensus 66 -----------~~------------------------~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~ 110 (648)
T PRK12267 66 -----------KT------------------------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFE 110 (648)
T ss_pred -----------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 01 13467888899999999999999743 33 335678999999
Q ss_pred HHHHCCCeEeec--CeEEEEec-----------------CC---------------------------------------
Q 010043 285 ELSKQGLVEESQ--GARVIFIE-----------------GV--------------------------------------- 306 (519)
Q Consensus 285 ~L~~~g~~~~~d--Ga~~~~~~-----------------g~--------------------------------------- 306 (519)
.|.++|++|..+ |.+|...+ |.
T Consensus 111 ~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 190 (648)
T PRK12267 111 KLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKN 190 (648)
T ss_pred HHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHH
Confidence 999999999743 33322211 00
Q ss_pred ----------CCCeEEEcC---CCCc--------cccchh--HHHH---Hh------hhh-hcCCCeEEEEecCCccccH
Q 010043 307 ----------NIPLIIVKS---DGGF--------NYASTD--LAAL---WY------RLN-EEKAEWIIYVTDVGQQLHF 353 (519)
Q Consensus 307 ----------~~d~Vl~ks---DG~~--------tY~t~D--iA~~---~~------r~~-~~~~d~~I~V~g~~q~~hf 353 (519)
-.|.-|.|. -|.| .|.==| ++|. -| .+. .|.. .+++.|.|+.. |
T Consensus 191 ~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~--~~~~~GkDii~-f 267 (648)
T PRK12267 191 EMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPA--DVHLVGKDILR-F 267 (648)
T ss_pred HHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhccc--ceEEEeeeecc-h
Confidence 001111111 1111 111000 1110 00 000 1222 24556666643 3
Q ss_pred HHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 010043 354 DMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL 431 (519)
Q Consensus 354 ~~~~--~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~ 431 (519)
..++ .++.++|+.+ ...-+.| |+++. +|+|||||+||+|++.|+++.
T Consensus 268 H~i~wpa~l~~~~~~~----p~~v~~h---g~l~~-eg~KMSKS~GN~i~p~d~l~~----------------------- 316 (648)
T PRK12267 268 HAIYWPIMLMALGLPL----PKKVFAH---GWWLM-KDGKMSKSKGNVVDPEELVDR----------------------- 316 (648)
T ss_pred hHHHHHHHHHhCCCCC----CcEEEec---ceEEE-CCceecccCCcccCHHHHHHH-----------------------
Confidence 3333 5556778742 1122233 77875 589999999999999999987
Q ss_pred HHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhcc-cCCchhHHHHHHHHHHHHHHH
Q 010043 432 EQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRK 487 (519)
Q Consensus 432 ~~~a~~vg~~avry~~L~~-~~~~~~~Fd~~~~~~~-~gnt~~YiqYa~aR~~silrk 487 (519)
+|++++||++++. ....+.+|+|+.+... +.+-.--+-....|+.+.+.+
T Consensus 317 ------ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~ 368 (648)
T PRK12267 317 ------YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINK 368 (648)
T ss_pred ------cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6999999999965 4689999999997552 222222244445777776665
No 38
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=6.5e-20 Score=198.92 Aligned_cols=272 Identities=15% Similarity=0.187 Sum_probs=176.3
Q ss_pred hHHHHHHHH-HHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHH
Q 010043 104 NWMAKNIQK-MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182 (519)
Q Consensus 104 ~~~~~~l~~-~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~ 182 (519)
.+|+..+.+ +++... ++..++|+ |+..|+|++||||+|..+.+|+++|.|+..|++|..++..+|+|. +.
T Consensus 5 ~~W~~~~A~~~~~r~~-------~~~~~~~~-~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-lR 75 (510)
T PRK00750 5 KHWADEEAEKIIKRLG-------KKPPVVVE-TGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-LR 75 (510)
T ss_pred ccChHHHHHHHHHhcC-------CCCcEEEE-eCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-cc
Confidence 466666654 333211 12237774 555799999999999999999999999999999999999999986 11
Q ss_pred HHHHHHHhhCCC---CCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHH
Q 010043 183 MLIEYLFEKFPN---SEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKV 259 (519)
Q Consensus 183 ~l~~~~~~~~~~---~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~ 259 (519)
.+ ....|+ ...+.+.++..+ ++|. |. -+.+++++...|++.
T Consensus 76 kv----p~~~p~~~~~~~~~G~pl~~~------------p~p~--------------G~------~~~~~~~~~~~~~~~ 119 (510)
T PRK00750 76 KV----PDNVPNQEMLEEYLGKPLTEI------------PDPF--------------GC------HESYAEHFNAPLREF 119 (510)
T ss_pred cc----CCCCCchHHHHHhcCcccccC------------CCCC--------------CC------chHHHHHHHHHHHHH
Confidence 11 000011 000112222110 1221 11 234688889999999
Q ss_pred HHHcCCceeeecc-ccc-cCc-HHHHHHHHHHCCCeEe--------ecCeEEEEec------CCCCCeEEEcC---CCCc
Q 010043 260 YKRLRVDLEEKGE-SFY-NPY-IPGVIDELSKQGLVEE--------SQGARVIFIE------GVNIPLIIVKS---DGGF 319 (519)
Q Consensus 260 ~~~Lgi~fd~~~e-s~~-~~~-v~~vi~~L~~~g~~~~--------~dGa~~~~~~------g~~~d~Vl~ks---DG~~ 319 (519)
++++||++|+.+. ..| ++. .+.+...|.+++.+.+ +-..-|+.+. |.....++..- +||.
T Consensus 120 ~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v 199 (510)
T PRK00750 120 LDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTV 199 (510)
T ss_pred HHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEE
Confidence 9999999985433 444 333 4455555665554432 1122344432 44433333222 3456
Q ss_pred cccchhHHH------------HHhhh------hhcCCCeEEEEecCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEE
Q 010043 320 NYASTDLAA------------LWYRL------NEEKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHV 379 (519)
Q Consensus 320 tY~t~DiA~------------~~~r~------~~~~~d~~I~V~g~~q~~-hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv 379 (519)
+|.+. +++ ..||+ .-.+.| +-+.|.||.. ++.....+++ .+|+.+ + .|+
T Consensus 200 ~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd--~e~~GkDh~~~s~~~~~~i~~~ilg~~~------P--~~~ 268 (510)
T PRK00750 200 TYDCE-CGHEGEVPVTGGHGKLQWKVDWPMRWAALGVD--FEPFGKDHASASYDTSKKIAREILGGEP------P--EPF 268 (510)
T ss_pred EEEcC-CCCEEEEecCCCCcccCCCCCcHHHHHHcCCC--EEeeCcccCcchHHHHHHHHHHHcCCCC------C--eee
Confidence 77552 111 12332 112444 6779999999 9999999998 999852 2 345
Q ss_pred EeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhh-cCCCCCCccc
Q 010043 380 GFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KNNRLTNYTF 458 (519)
Q Consensus 380 ~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L-~~~~~~~~~F 458 (519)
.||+|+..+|+|||||+||+|+++|+++. ++++++|||++ +.++.++++|
T Consensus 269 ~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-----------------------------~~pd~lR~~l~~~~~~~~~~~f 319 (510)
T PRK00750 269 VYELFLDKKGEKISKSKGNVITIEDWLEY-----------------------------APPESLRLFMFARPKPAKRLDF 319 (510)
T ss_pred eeeeEEeCCCCcccccCCCccCHHHHHHH-----------------------------CCHHHHHHHHHhCCCCCCCCcc
Confidence 67999987799999999999999999987 47899996665 7788999999
Q ss_pred cH
Q 010043 459 SF 460 (519)
Q Consensus 459 d~ 460 (519)
|+
T Consensus 320 ~~ 321 (510)
T PRK00750 320 DV 321 (510)
T ss_pred cH
Confidence 98
No 39
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.85 E-value=3e-20 Score=198.59 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=110.1
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||+|+||+|||.+ |++++++ ..++++|| +|.||..|++++..++++||+. .+.+.|+++ |.+.
T Consensus 171 ~D~Vi~RsDG~ptY~~---a~vVDD~-~m~ithVI--RG~d~~~~t~~q~~l~~aLG~~------~p~~~H~pl--v~~~ 236 (513)
T PRK14895 171 DDMVLLRADGTATYML---AVVVDDH-DMGITHII--RGDDHLTNAARQLAIYQAFGYA------VPSMTHIPL--IHGA 236 (513)
T ss_pred CCcEEEEeCCCcchhh---HHHHHHH-hcCCCEEE--ECchHhhhHHHHHHHHHHcCCC------CCeEEEEEe--EEcC
Confidence 5899999999999997 5788998 57999998 9999999999999999999984 478999976 8889
Q ss_pred CCcceeeecCCcccHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~~~--a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~ 465 (519)
+|+|||||+|. .++.++.+.+..+ ..+.+..-|-..+ ..|+... .+.+..|.+.+-..++..||++++.+
T Consensus 237 ~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~--~~e~~~~-----~el~~~F~~~~v~~s~~~FD~~KL~w 308 (513)
T PRK14895 237 DGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHG--DDEIISM-----TQAIDWFNLDSLGKSPSKLDFAKMNS 308 (513)
T ss_pred CCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCC--CcCCCCH-----HHHHhhCCHHhCcCCcCcCCHHHHHH
Confidence 99999999995 5899988887633 4555553221111 1122222 23467889999999999999999999
Q ss_pred ccC
Q 010043 466 DKG 468 (519)
Q Consensus 466 ~~g 468 (519)
+|+
T Consensus 309 lN~ 311 (513)
T PRK14895 309 LNA 311 (513)
T ss_pred HHH
Confidence 865
No 40
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=7.5e-20 Score=201.79 Aligned_cols=271 Identities=15% Similarity=0.155 Sum_probs=180.2
Q ss_pred ceEEEEecCCCcCCCCccchhHHH-HHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~-iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
++++|.-+-|+|+|.+||||+|+. ++.|+++|.+|..|++|.....++|.|..+..-+.. .+
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-----------~g------ 65 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-----------EG------ 65 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-----------cC------
Confidence 468999999999999999999999 999999999999999999999999998866533210 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e---s~~~~~v~~vi 283 (519)
.+ .+++++...+.|++.+++|||.+|++.. ..|...+.+++
T Consensus 66 ------------~~------------------------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~ 109 (556)
T PRK12268 66 ------------VT------------------------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFF 109 (556)
T ss_pred ------------CC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHH
Confidence 00 1245777788899999999999875422 24667899999
Q ss_pred HHHHHCCCeEeecCeEEEEec-----------C------------C----------------------------------
Q 010043 284 DELSKQGLVEESQGARVIFIE-----------G------------V---------------------------------- 306 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----------g------------~---------------------------------- 306 (519)
++|.++|++|+.++.+++... | +
T Consensus 110 ~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qw 189 (556)
T PRK12268 110 LKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHF 189 (556)
T ss_pred HHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceE
Confidence 999999999976655544211 0 0
Q ss_pred ------------------------------------CCCeEEEc--C----------CCCccccchh--HHHH---Hh--
Q 010043 307 ------------------------------------NIPLIIVK--S----------DGGFNYASTD--LAAL---WY-- 331 (519)
Q Consensus 307 ------------------------------------~~d~Vl~k--s----------DG~~tY~t~D--iA~~---~~-- 331 (519)
-.|.-|-| . +|.+.|.--| ++|. ..
T Consensus 190 F~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~ 269 (556)
T PRK12268 190 FLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWA 269 (556)
T ss_pred EEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHH
Confidence 00111111 1 1222232212 1110 00
Q ss_pred -------hhh-hc-C-CCeEEEEecCCccccHHHH--HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCc
Q 010043 332 -------RLN-EE-K-AEWIIYVTDVGQQLHFDMV--FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (519)
Q Consensus 332 -------r~~-~~-~-~d~~I~V~g~~q~~hf~~~--~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~ 399 (519)
.+. -| . ....+.+.|.|+.. |..+ -.++.+.|... ++. ..|+..|+|+. +|+|||||+||+
T Consensus 270 ~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~-Fh~~~~p~~l~~~~~~~---~~P--~~v~~~G~v~~-~G~KMSKS~GN~ 342 (556)
T PRK12268 270 ERTGDPEAWKEFWLDPETKSYYFIGKDNIP-FHSIIWPAMLLGSGEPL---KLP--DEIVSSEYLTL-EGGKFSKSRGWG 342 (556)
T ss_pred HhcCCchHHHHHhCCCCCeEEEEEeeccCc-chHHHHHHHHHhcCCCC---CCC--CEeeccCCEEE-CCeeeccCCCcc
Confidence 000 01 0 01235566666543 3322 24445566210 121 25556688874 799999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhccc-CCch-hHHHH
Q 010043 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDK-GNTA-VYLLY 476 (519)
Q Consensus 400 v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd~~~~~~~~-gnt~-~YiqY 476 (519)
|++.|++++ +|.+|+||++++..+ ..+++||++.+.... .+.. .+.+|
T Consensus 343 I~p~dli~~-----------------------------yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~ 393 (556)
T PRK12268 343 IWVDDALER-----------------------------YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNL 393 (556)
T ss_pred cCHHHHHHH-----------------------------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHH
Confidence 999999998 699999999998765 588999999965432 2222 36777
Q ss_pred HHHHHHHHHHHh
Q 010043 477 AHARICSIIRKS 488 (519)
Q Consensus 477 a~aR~~silrka 488 (519)
+ .|+++++++.
T Consensus 394 ~-~r~~~~~~~~ 404 (556)
T PRK12268 394 V-NRVLSFIEKY 404 (556)
T ss_pred H-HHHHHHHHHh
Confidence 7 7999998874
No 41
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.84 E-value=1.5e-20 Score=198.74 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHHHHCCCeEe-----------------------ecC--------
Q 010043 250 EISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEE-----------------------SQG-------- 297 (519)
Q Consensus 250 ~~~~~~~~~~~~~Lgi~fd-~~~es~~~~~v~~vi~~L~~~g~~~~-----------------------~dG-------- 297 (519)
+.+.+.+.++|+.|||++| +..+|...+...++++.|.++|++|. .+|
T Consensus 51 ~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~ 130 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEE 130 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHH
Confidence 4456778889999999997 56665544577899999999998883 011
Q ss_pred ------------eEEEEec-----------C-------CCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecC
Q 010043 298 ------------ARVIFIE-----------G-------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDV 347 (519)
Q Consensus 298 ------------a~~~~~~-----------g-------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~ 347 (519)
++-++++ | .-.|+||.|+||+|||.. |..++.. ..+.+||| +|.
T Consensus 131 ~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~f---A~vVDD~-~m~ITHVi--RG~ 204 (445)
T PRK12558 131 EKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTL---PSVVDDI-DMGITHII--RGE 204 (445)
T ss_pred HHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCccccc---cceeccc-cCCCCEEE--ech
Confidence 1112211 1 125899999999999985 6777887 57999997 999
Q ss_pred CccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHH--HHHHHHHHhcCCCC
Q 010043 348 GQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKE 425 (519)
Q Consensus 348 ~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~--~a~~~i~~~~~~~~ 425 (519)
||....+++..+.++|||. .|.+.|++ ++++++|+|||||.|. +++.++.+.+.. ...+.+..-|-.++
T Consensus 205 d~l~~t~~q~~l~~alg~~------~P~f~H~p--li~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~ 275 (445)
T PRK12558 205 DHVTNTAVQIQIFEALGAK------PPVFAHLS--LLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDP 275 (445)
T ss_pred hhhhCCHHHHHHHHHhCCC------CCeEEEcc--cccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCC
Confidence 9999998888999999995 47899995 5999999999999994 699999988763 34565554332211
Q ss_pred CCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC
Q 010043 426 WTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 426 ~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~g 468 (519)
.+++... .+.+..|++.+-..++..||.+++.++|+
T Consensus 276 --~~e~~~~-----~eli~~F~l~~~~~~~~~fd~~KL~w~N~ 311 (445)
T PRK12558 276 --VEPYTSM-----EELAESFDLSSFSRAPAKFDPEDLERLNA 311 (445)
T ss_pred --CcccCCH-----HHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 0111111 23467899999999999999999999964
No 42
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.81 E-value=7.5e-19 Score=189.60 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=157.1
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCC-CCccccccHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPN-SEDANETAIGEL 206 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~-~~~~~~~~i~~l 206 (519)
++++|+-.= .|+|+.||||+|..+.+|+++|.++..|++|..++..+|+.. +..+ ....|+ ...+-|.||..
T Consensus 18 ~~~~~~tg~-~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~-lRKv----p~~~p~~~~~ylG~Pl~~- 90 (515)
T TIGR00467 18 NLYTVASGI-TPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP-LRKV----YPFLPEELETYLGMPLTR- 90 (515)
T ss_pred CeEEEecCC-CCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc-cccc----cccccHHHHHhCCCccee-
Confidence 368885544 499999999999999999999999999999999999999855 2211 001111 00111222221
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-ccc-cCcHHHHH-
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYIPGVI- 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-s~~-~~~v~~vi- 283 (519)
-+||. .+. ..+.+++...|.+.++.|||++++.+- -.| ++...+.+
T Consensus 91 -----------vpdp~-----------------g~~---~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~ 139 (515)
T TIGR00467 91 -----------IPDPE-----------------GCK---TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIK 139 (515)
T ss_pred -----------cCCCC-----------------CCc---HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHH
Confidence 12332 122 345888999999999999999864332 344 33333222
Q ss_pred HHHHHCCCeE--------eecCeEEEEec------CCCCCeEE-EcCCCCccccchhHHH------------HHhhhhhc
Q 010043 284 DELSKQGLVE--------ESQGARVIFIE------GVNIPLII-VKSDGGFNYASTDLAA------------LWYRLNEE 336 (519)
Q Consensus 284 ~~L~~~g~~~--------~~dGa~~~~~~------g~~~d~Vl-~ksDG~~tY~t~DiA~------------~~~r~~~~ 336 (519)
..|+...-+. ++--.-|+.+. |.....++ +..+.+.+|.|. +++ ..||+ .|
T Consensus 140 ~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~-cG~~g~~~~~~g~~KL~Wkv-dW 217 (515)
T TIGR00467 140 IALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCE-CGNQESVDIYTGAIKLPWRV-DW 217 (515)
T ss_pred HHHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCceEEEecCCceEEEEcC-CCCEEEEeecCCCcccCCCC-Cc
Confidence 2222222111 11112244332 43322222 222235566542 221 12332 22
Q ss_pred CCCe-----EEEEecCCccc----cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE-EcCCCcceeeecCCcccHHHHH
Q 010043 337 KAEW-----IIYVTDVGQQL----HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGKRLRTRFSEVVRLVDLL 406 (519)
Q Consensus 337 ~~d~-----~I~V~g~~q~~----hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V-~~~~g~kmSkR~G~~v~l~dll 406 (519)
..-| -+=-+|.||+. +-.+...+.+++|..| | .++.|++| +..+|+|||||+||+++++|++
T Consensus 218 ~~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~---P-----~~~~ye~v~L~~~g~KMSKS~Gn~itl~dll 289 (515)
T TIGR00467 218 PARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSP---P-----VTVQYEWISLKGKGGKMSSSKGDVISVKDVL 289 (515)
T ss_pred HhhHhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCC---C-----cCcEEEEEEEcCCCccccCCCCCCccHHHHH
Confidence 2211 13346777765 4455544446997643 2 22356666 3345789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHH
Q 010043 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (519)
Q Consensus 407 ~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~ 463 (519)
+. ++++++||++++.+++++++||++.+
T Consensus 290 ~~-----------------------------~~pdalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 290 EV-----------------------------YTPEITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred HH-----------------------------cCHHHHHHHHhccCCCCCCcCCHHHH
Confidence 98 48899999999999999999999855
No 43
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=6.6e-18 Score=193.36 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=98.7
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+++.+|...-|||+|+|||||+++.+++|+++|.+|..||+|......+.+|.++...+... .+- ....+
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~---~g~----~~~~~--- 106 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKY---YGI----RKDDI--- 106 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHH---hCC----CcccC---
Confidence 56799989999999999999999999999999999999999999999999999987544221 000 00000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
. ..+ ..+..+++++.+.+.+++.+++||+.+||..+ ..|...+..
T Consensus 107 -----------~-~~~------------------f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 107 -----------S-REE------------------FIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred -----------C-HHH------------------HHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 0 011 12333456788888999999999999998533 345567999
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|+
T Consensus 157 ~f~~L~~~Gliy~ 169 (800)
T PRK13208 157 SFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHCCCeee
Confidence 9999999999986
No 44
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.77 E-value=6.3e-18 Score=178.13 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=108.7
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||.|+||.|||.. |..++.. ..+.+||| +|.||....+++..+.++|||.+ .+.+.|++ ++.++
T Consensus 165 ~D~Vi~R~Dg~PtY~f---A~vVDD~-~mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~-----pp~f~Hlp--li~~~ 231 (433)
T PRK12410 165 DSFVILRADKTPTYNF---ACAVDDM-LYDISLII--RGEDHVSNTPKQILIREALGYNK-----EITYAHLP--IILNE 231 (433)
T ss_pred CCeEEEcCCCCccccc---cchhchh-hcCCCEEE--echhhhhCcHHHHHHHHHcCCCC-----CCeEEEee--eeeCC
Confidence 5799999999999985 6778887 68999997 99999998888889999999952 25899995 58889
Q ss_pred CCcceeeecCCcccHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~~~--a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~ 465 (519)
+|+|||||+| ..++.++.+.+... ..+.+..-|-..+ +|+... .+.+..|.+.+-..++..||++++.+
T Consensus 232 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG~~~~---~e~~~~-----~eli~~F~~~~i~~~~~~~d~~kL~~ 302 (433)
T PRK12410 232 EGKKMSKRDN-ASSVKWLLEQGFLPSAIANYLILLGNKTP---KEIFTL-----EEAIEWFDIEKISKSPAKFDLKKLRF 302 (433)
T ss_pred CCCeeecccC-hhhHHHHHHCCCCHHHHHHHHHHhCCCCc---ccccCH-----HHHHHhCCHhhCCCccccCCHHHHHH
Confidence 9999999999 56899999887633 4555554332111 222222 23567889999999999999999999
Q ss_pred ccC
Q 010043 466 DKG 468 (519)
Q Consensus 466 ~~g 468 (519)
+|+
T Consensus 303 ~N~ 305 (433)
T PRK12410 303 INR 305 (433)
T ss_pred HHH
Confidence 864
No 45
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.76 E-value=3.8e-17 Score=185.23 Aligned_cols=116 Identities=14% Similarity=0.282 Sum_probs=93.4
Q ss_pred CceEEEEecCCCcCCCCccchhHHH-HHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~-iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.++++|--.=|+|+|++||||++++ +..|++||.+|..|++|......+++|+.+..-+.. .+
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----------~g----- 79 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----------EN----- 79 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----------cC-----
Confidence 4579999999999999999999975 668999999999999999999999999987643310 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGV 282 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---es~~~~~v~~v 282 (519)
..| +++++.+...|++.+++|||.||.+. +..|...++++
T Consensus 80 -------------~~p------------------------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~ 122 (801)
T PLN02610 80 -------------CTP------------------------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAI 122 (801)
T ss_pred -------------CCH------------------------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHH
Confidence 111 24567777888999999999997542 23466789999
Q ss_pred HHHHHHCCCeEee
Q 010043 283 IDELSKQGLVEES 295 (519)
Q Consensus 283 i~~L~~~g~~~~~ 295 (519)
+.+|.++|++|..
T Consensus 123 f~~L~~~G~Iy~~ 135 (801)
T PLN02610 123 FKKLMENNWLSEN 135 (801)
T ss_pred HHHHHHCCCEEEe
Confidence 9999999999863
No 46
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.76 E-value=6.4e-17 Score=186.62 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=99.4
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
..++.+|...-||+||+|||||+++.++.|+++|..|..|++|.+....+.+|..+...++... ... +....+
T Consensus 31 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~---~~~----g~~~~~ 103 (861)
T TIGR00422 31 NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKL---GAE----GKTKHD 103 (861)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHh---ccc----CCchhh
Confidence 3467899899999999999999999999999999999999999999999999998876543211 100 000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~ 280 (519)
+ |.++.++..+++++.+...+++.+++||+.+||..+ ..|...+.
T Consensus 104 -----------~-------------------~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~ 153 (861)
T TIGR00422 104 -----------L-------------------GREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVK 153 (861)
T ss_pred -----------C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHH
Confidence 0 111122333455778888999999999999998643 23456799
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
+++.+|.++|++|+
T Consensus 154 ~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 154 EAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHCCCeee
Confidence 99999999999985
No 47
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.76 E-value=6.4e-18 Score=178.10 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=86.4
Q ss_pred EEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHH
Q 010043 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEF 209 (519)
Q Consensus 130 V~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~ 209 (519)
++|--.=|.|+|++||||+.+++.+|++||.+|..|++|......+++|+.+..-+.. .+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-----------~g--------- 60 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-----------QG--------- 60 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----------TT---------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----------cC---------
Confidence 4566677899999999999999999999999999999999999999999977644321 00
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHHHHH
Q 010043 210 YRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDEL 286 (519)
Q Consensus 210 y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---es~~~~~v~~vi~~L 286 (519)
.+| +++++.....|++.+++|||++|.+. +..|...+++++++|
T Consensus 61 ---------~~p------------------------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L 107 (391)
T PF09334_consen 61 ---------IDP------------------------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRL 107 (391)
T ss_dssp ---------S-H------------------------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHH
T ss_pred ---------CCH------------------------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHH
Confidence 111 24577778899999999999997543 345667899999999
Q ss_pred HHCCCeEeec
Q 010043 287 SKQGLVEESQ 296 (519)
Q Consensus 287 ~~~g~~~~~d 296 (519)
.++|++|..+
T Consensus 108 ~~~G~I~~~~ 117 (391)
T PF09334_consen 108 YDNGYIYKRE 117 (391)
T ss_dssp HHTTSEEEEE
T ss_pred HhcCceeecc
Confidence 9999999744
No 48
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.75 E-value=1.3e-16 Score=184.22 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=97.5
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+++.+|...-||+||.|||||+++.++.|+++|..|..||+|......+.+|..+...+...... .+....+
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~-------~g~~~~~- 106 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAA-------EGKSRHD- 106 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHh-------cCCChHH-
Confidence 45689989999999999999999999999999999999999999999999998665333211000 0000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es-----~~~~~v~~ 281 (519)
..++ +.++..+++++.+...+++.+++||+.+||..+. .|...+.+
T Consensus 107 -------------------~~re----------~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~ 157 (874)
T PRK05729 107 -------------------LGRE----------KFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVRE 157 (874)
T ss_pred -------------------CCHH----------HHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHH
Confidence 0111 1223334557888889999999999999986542 34467999
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|.
T Consensus 158 ~F~~L~~~GlIyr 170 (874)
T PRK05729 158 VFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHCCCEee
Confidence 9999999999995
No 49
>PLN02627 glutamyl-tRNA synthetase
Probab=99.75 E-value=8e-18 Score=180.34 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||.|+||.|||.. |..++.. ..+.+||| +|.||....+++..+.++|||. .+.+.|++ +|+++
T Consensus 224 ~D~Vi~R~DG~PtY~f---A~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~------~P~f~Hlp--li~~~ 289 (535)
T PLN02627 224 GDFVLLRSNGQPVYNF---CVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFP------MPRFAHVS--LILAP 289 (535)
T ss_pred CCeEEEecCCCccccc---cceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCC------CCeEEEcc--ceeCC
Confidence 5899999999999984 6777887 67999997 9999999998888999999995 36899995 58899
Q ss_pred CCcceeeecCCcccHHHHHHHHHHH--HHHHHHHhcCCCCCCH---HHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAKNR--SKAVLIERGKDKEWTE---EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~~~--a~~~i~~~~~~~~~~~---~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~ 462 (519)
+|+|||||+| .+++.++.+.+... ..+.+..- +|+. .|+... .+.+..|++.+-..++..||.++
T Consensus 290 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~nyla~L----Gws~~~~~e~~~~-----~eli~~F~l~~v~~s~~~fD~~K 359 (535)
T PLN02627 290 DRSKLSKRHG-ATSVGQFREMGYLPDAMVNYLALL----GWNDGTENEIFTL-----EELVEKFSIDRINKSGAVFDSTK 359 (535)
T ss_pred CCCccccccC-CccHHHHHHCCCCHHHHHHHHHHh----CCCCCCCCCcCCH-----HHHHHhCCHhhCCCcccccCHHH
Confidence 9999999998 56899988887633 45555422 2321 122222 23467789998899999999999
Q ss_pred HhcccC
Q 010043 463 MLNDKG 468 (519)
Q Consensus 463 ~~~~~g 468 (519)
+.++|+
T Consensus 360 L~wlN~ 365 (535)
T PLN02627 360 LKWMNG 365 (535)
T ss_pred HHHHHH
Confidence 999974
No 50
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.74 E-value=3.2e-17 Score=160.67 Aligned_cols=217 Identities=20% Similarity=0.175 Sum_probs=150.6
Q ss_pred cCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHh
Q 010043 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (519)
Q Consensus 135 ~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (519)
-.|+|||+||+||+|++++....||- ..| ...--+.|... + -
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~--------------~------r------------- 47 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ--------------E------R------------- 47 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC--------------C------C-------------
Confidence 46999999999999999999888885 333 33333556211 0 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee----------eccccccCcHHHHHH
Q 010043 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPYIPGVID 284 (519)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~----------~~es~~~~~v~~vi~ 284 (519)
. ...+.+.+.++++.||+..|. ...|.+.+...++++
T Consensus 48 ----~-----------------------------~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~ 94 (239)
T cd00808 48 ----S-----------------------------VPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAE 94 (239)
T ss_pred ----C-----------------------------chHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHHH
Confidence 0 111234556688999998864 112333345678888
Q ss_pred HHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcC
Q 010043 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAG 364 (519)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg 364 (519)
+|.++| ||.|||.. |...+.. ..++++|| +|.||..|.+++..++++||
T Consensus 95 ~L~~~g-------------------------dg~ptY~~---a~~vDD~-~~~ithVi--RG~D~~~~t~~q~~l~~aLg 143 (239)
T cd00808 95 KLLEKG-------------------------DGFPTYHL---ANVVDDH-LMGITHVI--RGEEHLSSTPKQILLYEALG 143 (239)
T ss_pred HHHHcC-------------------------CCCccccc---HHHHhHH-hcCCCEEE--EChhhhhChHHHHHHHHHcC
Confidence 998877 89999986 5556776 58999995 99999999999999999999
Q ss_pred CCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhH
Q 010043 365 WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVGYGA 442 (519)
Q Consensus 365 ~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~--a~~~i~~~~~~~~~~~~e~~~~a~~vg~~a 442 (519)
+. .+.+.|++ ++.+.+|+|||||.|+ .+++++.+++... ..+.+..-|-.+. ...+.... .+.
T Consensus 144 ~~------~p~~~h~p--ll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~-~~~~~~~~-----~~l 208 (239)
T cd00808 144 WE------PPKFAHLP--LILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPP-DGEEFFTL-----EEL 208 (239)
T ss_pred CC------CCceEeec--cccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCC-CCCCcCCH-----HHH
Confidence 95 36788985 5778899999999997 6999988776543 2333332221110 00011111 124
Q ss_pred HHHHhhcCCCCCCccccHHHHhcccC
Q 010043 443 AKYFDLKNNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 443 vry~~L~~~~~~~~~Fd~~~~~~~~g 468 (519)
+..|.+..-..++..||++++..+|.
T Consensus 209 ~~~f~~~~~~~~~~~~d~~kL~~~n~ 234 (239)
T cd00808 209 IELFDLERVSKSPAIFDPEKLDWLNG 234 (239)
T ss_pred HhcCCHhhCCcCcCcCCHHHHHHHHH
Confidence 56788888888999999999988753
No 51
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.72 E-value=5.1e-18 Score=173.60 Aligned_cols=263 Identities=15% Similarity=0.193 Sum_probs=134.1
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCC--CccccccH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS--EDANETAI 203 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~--~~~~~~~i 203 (519)
.+..+++ -++-.|.|+.|||++|..+.+++++|.|+.+|++|..++..+|... +..+ ....|+. ..+-+.|+
T Consensus 21 ~~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~-lRKv----P~~~p~~~~~~ylg~Pl 94 (360)
T PF01921_consen 21 GKEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP-LRKV----PPNVPNPELEKYLGKPL 94 (360)
T ss_dssp --SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBT
T ss_pred CCccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc-ccCC----CCCCChHHHHHhcCCcc
Confidence 3456777 7889999999999999999999999999999999999999999877 3322 2233433 22334444
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ecccccc-CcHHH
Q 010043 204 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYN-PYIPG 281 (519)
Q Consensus 204 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~es~~~-~~v~~ 281 (519)
..+ +||. .+++. +.+++...|.+.|+.|||++++ .....|. +...+
T Consensus 95 t~V------------PdP~-----------------G~~~S---yaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~ 142 (360)
T PF01921_consen 95 TRV------------PDPF-----------------GCHES---YAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDE 142 (360)
T ss_dssp TTS------------B-TT-----------------SSSSC---HHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHH
T ss_pred ccC------------CCCC-----------------CCCcc---HHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHH
Confidence 422 3332 12222 4788889999999999999864 3334453 33222
Q ss_pred H-HHHHHHCCCeE--------eecCeEEEEe----c--CC-CCCeEEEcC--CCCccccchhHHHH------------Hh
Q 010043 282 V-IDELSKQGLVE--------ESQGARVIFI----E--GV-NIPLIIVKS--DGGFNYASTDLAAL------------WY 331 (519)
Q Consensus 282 v-i~~L~~~g~~~--------~~dGa~~~~~----~--g~-~~d~Vl~ks--DG~~tY~t~DiA~~------------~~ 331 (519)
. ...|.+..-+. ++-..-|+.+ + |. +...|+-.. .++.+|.|+.+++. .|
T Consensus 143 ~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~W 222 (360)
T PF01921_consen 143 QIRTALENRDEIREILNEYRGRERPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQW 222 (360)
T ss_dssp HHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-H
T ss_pred HHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccC
Confidence 2 22222211111 1111113222 1 32 112222222 45667777444432 23
Q ss_pred hh------hhcCCCeEEEEecCCccc---cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCccc
Q 010043 332 RL------NEEKAEWIIYVTDVGQQL---HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (519)
Q Consensus 332 r~------~~~~~d~~I~V~g~~q~~---hf~~~~~i~-~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~ 401 (519)
|+ ...+.| +=--|.||.. -+..-..|+ +.+|+.| | .|+.|++|+...|.|||||+||+++
T Consensus 223 kvDW~mRW~~lgVd--fEp~GKDH~~~GGS~d~~~~I~~~i~g~~p------P--~~~~YE~~~~~g~~kmSsSkG~~~t 292 (360)
T PF01921_consen 223 KVDWPMRWAALGVD--FEPFGKDHASPGGSYDTSKRIAREILGYEP------P--VPFPYEFFLDKGGGKMSSSKGNGIT 292 (360)
T ss_dssp HHHHHHHHHHTT-S--EEEEEHHHHCTTSHHHHHHHHHHHCC-------------EEEEE--EEES--------------
T ss_pred CCcChhhhhhcCce--eccCCCccCCCCCChhhHHHHHHHHhCCCC------C--CCCCeeEEEeCCCcccccCCCCccC
Confidence 32 223555 4447888877 777778888 7889863 2 6889999998877799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHH-HHhc
Q 010043 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QMLN 465 (519)
Q Consensus 402 l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~-~~~~ 465 (519)
++|+|+-+ .++.+||++++.+|++..+|+++ .+.+
T Consensus 293 ~~e~L~~~-----------------------------~PE~lr~l~~~~~P~~~~~~~~~~~i~~ 328 (360)
T PF01921_consen 293 PEEWLEYA-----------------------------PPESLRYLMARTKPNKAKDFSFDLVIPR 328 (360)
T ss_dssp HHHHHTTS------------------------------HHHHHHHHHCS-TTS-EEE--STTHHH
T ss_pred HHHHHHhc-----------------------------CHHHHHHHHcccCCCcceEeccCcchHH
Confidence 99999973 57899999999999999999998 5443
No 52
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1e-15 Score=170.76 Aligned_cols=130 Identities=20% Similarity=0.253 Sum_probs=99.3
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++..|.-..|||||.|||||+-+..+-|+|+|..|..||+|...-+.+.+|-.....++.... ..+
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~---~~g----------- 98 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLA---AEG----------- 98 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHH---HcC-----------
Confidence 559999999999999999999999999999999999999999999999999877655431110 000
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccc-----cCcHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-----NPYIPGV 282 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~~-----~~~v~~v 282 (519)
..+.+ ..|+.| ++..++..+.+...+.+.+++||+++||..|.+- +..++++
T Consensus 99 ------~~r~d-------~gRe~F----------l~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~ 155 (877)
T COG0525 99 ------ITRHD-------LGREEF----------LKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEA 155 (877)
T ss_pred ------CCccc-------cCHHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHH
Confidence 00000 011222 2333445678889999999999999999877543 3579999
Q ss_pred HHHHHHCCCeEe
Q 010043 283 IDELSKQGLVEE 294 (519)
Q Consensus 283 i~~L~~~g~~~~ 294 (519)
+-+|.++|++|+
T Consensus 156 Fv~Ly~~GlIYr 167 (877)
T COG0525 156 FVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHCCceee
Confidence 999999999995
No 53
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.72 E-value=2e-16 Score=162.05 Aligned_cols=137 Identities=22% Similarity=0.229 Sum_probs=103.5
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+|+.|+||.|||. +|..++.. ..+.+||| +|.||....+++..+.++||+. .+.+.|++ ++++.
T Consensus 174 ~D~vi~r~dg~ptY~---fA~vVDD~-~~gITHVi--RG~D~l~~t~~Q~~L~~~Lg~~------~P~~~H~p--l~l~~ 239 (314)
T PF00749_consen 174 GDFVIRRSDGYPTYH---FAVVVDDH-LMGITHVI--RGEDLLSSTPRQILLYEALGWP------PPPYAHLP--LILNE 239 (314)
T ss_dssp BTEEEESTTSEB-HH---HHHHHHHH-HTT-SEEE--EEGGGTTCHHHHHHHHHHCTSS------S-EEEEEE--EEEET
T ss_pred CchhccccccCcccc---cceeeccc-ccccCeEE--EccccccccHHHHHHHHHhCCC------CcceEeee--eeecC
Confidence 589999999999998 58888887 67999997 9999999888888999999995 37899995 47779
Q ss_pred CCcceeeecCCcc-cHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHh
Q 010043 388 DGKRLRTRFSEVV-RLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML 464 (519)
Q Consensus 388 ~g~kmSkR~G~~v-~l~dll~e~~~~--a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~ 464 (519)
+|+|+|||+|... .+.++.+....+ ..+.+..+| |++....++.. -.+.++.|+++....++..||.+++.
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG----~~~~~~~e~~~--~~~~~~~f~~~~~~~~~~~fd~~kL~ 313 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLG----WSPEAIREFFS--LDELIKQFDLSKISKSPAVFDRKKLD 313 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTT----B-HCTHHCHHH--HHHHHHHC-GGGBHSSHEEHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhc----CCcchhhhhcC--HHHHHHHhhHhhccCchHHhCHHHhC
Confidence 9999999999663 377888877644 567777653 44333333322 24567889999999999999999874
No 54
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.71 E-value=2e-17 Score=137.29 Aligned_cols=82 Identities=39% Similarity=0.599 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcC-CCCCCCccccc-ccCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEEE
Q 010043 14 ELEKVFDLALKATV-PNETDVRPLIA-ACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSV 91 (519)
Q Consensus 14 ~~~~~~~~al~~~~-~~~~~~~~~i~-~~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~~i~v 91 (519)
+|++.|+++|.... .......+.++ +|++++||||||+||.+||.+| ++|++||++|++.|...+.|+++++
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~GD~~~n~a~~lak~~k------~~P~~iA~~i~~~l~~~~~i~~vev 75 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNPKFGDYQTNIAFRLAKKLK------KNPREIAEEIAEKLEKSPIIEKVEV 75 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSGGG-SEEEEHHHHHHHHTT------S-HHHHHHHHHHCHCTTTTEEEEEE
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCCCceeeeccchHHHHHHcC------CCHHHHHHHHHHhcCCCCCEEEEEE
Confidence 45566666666552 11122344555 4578999999999999999999 9999999999999988888999999
Q ss_pred ecCcEEEEEe
Q 010043 92 AGPGFVNVVL 101 (519)
Q Consensus 92 agpGfIN~~l 101 (519)
+|||||||+|
T Consensus 76 ~gpGFiN~~L 85 (85)
T PF03485_consen 76 AGPGFINFFL 85 (85)
T ss_dssp ETTTEEEEEE
T ss_pred cCCcEEEEeC
Confidence 9999999996
No 55
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.70 E-value=2e-16 Score=171.49 Aligned_cols=231 Identities=16% Similarity=0.077 Sum_probs=155.3
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+++|+. .+.|||||+|||||+|++++-+.+|| +|+....--++|....+..
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~R----------------------- 149 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTKR----------------------- 149 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCccc-----------------------
Confidence 456666 68999999999999999999999999 4555555556674221100
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDE 285 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~es~~~~~v~~vi~~ 285 (519)
. ...+.+.+.++++.||+..|. ..-|.|.+...+.+++
T Consensus 150 ------------~-----------------------------~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~ 188 (567)
T PRK04156 150 ------------P-----------------------------DPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARK 188 (567)
T ss_pred ------------c-----------------------------hHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHH
Confidence 0 011123455577777776541 2234444456666777
Q ss_pred HHHCCCeEe----------------------------------------ecCeEEEEecCC-------CCCeEEEcCC--
Q 010043 286 LSKQGLVEE----------------------------------------SQGARVIFIEGV-------NIPLIIVKSD-- 316 (519)
Q Consensus 286 L~~~g~~~~----------------------------------------~dGa~~~~~~g~-------~~d~Vl~ksD-- 316 (519)
|.++|.+|. .+|..++++..+ -.|+|+.|.+
T Consensus 189 Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~ 268 (567)
T PRK04156 189 LIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKT 268 (567)
T ss_pred HHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCC
Confidence 777776663 112334454421 1467888764
Q ss_pred -------CCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC
Q 010043 317 -------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 389 (519)
Q Consensus 317 -------G~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g 389 (519)
|-..|.|=|+|..++.. ..|.+|+| .|.||..+-+++..+.++||+. .+.+.|++ ++. .+|
T Consensus 269 ~h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~------~P~~~H~~--~L~-~~g 336 (567)
T PRK04156 269 PHPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWE------YPETIHYG--RLK-IEG 336 (567)
T ss_pred CccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCC------CceEEEcc--eec-CCC
Confidence 32234444678777776 57999997 9999999999988999999994 37899984 566 578
Q ss_pred cceeeec-------C--------CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCC-
Q 010043 390 KRLRTRF-------S--------EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL- 453 (519)
Q Consensus 390 ~kmSkR~-------G--------~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~- 453 (519)
.|||||+ | +..|+..|...+ +-++|+|.|++.....
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG----------------------------~~PeAi~~fl~~lG~s~ 388 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG----------------------------ILPEAIRELIIEVGVKE 388 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHcC----------------------------CCHHHHHHHHHHhCCCC
Confidence 8999999 4 224555555443 4578899999876654
Q ss_pred CCccccHHHHhccc
Q 010043 454 TNYTFSFDQMLNDK 467 (519)
Q Consensus 454 ~~~~Fd~~~~~~~~ 467 (519)
++..|+|+.+.+.+
T Consensus 389 ~~~~~~~~~L~~~n 402 (567)
T PRK04156 389 TDATISWENLYAIN 402 (567)
T ss_pred CCcccCHHHHHHHH
Confidence 89999999886553
No 56
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.3e-16 Score=165.67 Aligned_cols=257 Identities=17% Similarity=0.214 Sum_probs=167.1
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCC------ccccc
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE------DANET 201 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~------~~~~~ 201 (519)
..++| -++..|.|..|||++|-.+.||+++|.|+..|++|..++..+|+.. +. +-.++.. .|-+.
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~-lR-------kvp~~lp~~~~~e~Ylg~ 89 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP-LR-------KVPRNLPDPEELEQYLGM 89 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc-cc-------cCCCCCCChHHHHHHcCC
Confidence 56777 6889999999999999999999999999999999999999999866 22 2111111 11122
Q ss_pred cHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-cccc-cCcH
Q 010043 202 AIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-ESFY-NPYI 279 (519)
Q Consensus 202 ~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-es~~-~~~v 279 (519)
|+..+ +||. .|++. +.+++...|.+.++.+||..++.+ .-.| ++..
T Consensus 90 Plt~I------------PdP~-----------------G~~~S---ya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~ 137 (521)
T COG1384 90 PLTEI------------PDPF-----------------GCCDS---YAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLY 137 (521)
T ss_pred ccccC------------CCCc-----------------cccch---HHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccH
Confidence 22211 2332 12333 478888999999999999986433 2344 3332
Q ss_pred HHHHHHHHHC-C--------CeE-eecCeEEEEec------CC-CCCeEE-EcCCCCccccchhHHH------------H
Q 010043 280 PGVIDELSKQ-G--------LVE-ESQGARVIFIE------GV-NIPLII-VKSDGGFNYASTDLAA------------L 329 (519)
Q Consensus 280 ~~vi~~L~~~-g--------~~~-~~dGa~~~~~~------g~-~~d~Vl-~ksDG~~tY~t~DiA~------------~ 329 (519)
.+++....++ . +.- +-++.+ ..+. |. ....|+ +..+||.+|.|.+ ++ .
T Consensus 138 ~~~i~~ale~rdeI~~il~~~~~~~~~e~~-~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~-Gh~g~v~ir~g~~KL 215 (521)
T COG1384 138 DEAIRIALERRDEIMEILNEYRGRELEEDW-SPFMPICEKCGRILTTPVIEWDGEGTVEYRCEC-GHEGEVDIRGGEGKL 215 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcCCcccCCc-eeccccccccCCcceeEEEEecCCceEEEEecC-CccceeeccccCccc
Confidence 2222222211 1 111 112333 3222 44 222233 3445678888754 21 1
Q ss_pred HhhhhhcCCCeEEEE-----ecCCcc---ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcc
Q 010043 330 WYRLNEEKAEWIIYV-----TDVGQQ---LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (519)
Q Consensus 330 ~~r~~~~~~d~~I~V-----~g~~q~---~hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 400 (519)
.||+ .|+.-|.+-= -|.||. +-+.....|++ .+|+.| | .++.|++|.+..|.|||||+|++|
T Consensus 216 ~WRv-dWp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~p---P-----~~~~YE~i~lkg~~~mSsSkG~~i 286 (521)
T COG1384 216 PWRV-DWPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEP---P-----VPFVYEWILLKGGGKMSSSKGNVI 286 (521)
T ss_pred ccCc-CccchhhccCcccccCCcccccccCchHHHHHHHHHhcCCCC---C-----CCCceEEEEecCCcccccCCCcEE
Confidence 3554 3444443322 344453 35557778885 889853 2 567899998877789999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH-Hhc
Q 010043 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ-MLN 465 (519)
Q Consensus 401 ~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~-~~~ 465 (519)
+++|+++-+ .++.+||++++.+|+++++||++. +++
T Consensus 287 ~~~dwlev~-----------------------------~pE~lry~~~r~kP~r~~~~d~~~~il~ 323 (521)
T COG1384 287 SLSDWLEVA-----------------------------PPEVLRYLIARTKPNRHIDFDFDLGILK 323 (521)
T ss_pred cHHHHHHhc-----------------------------CHhHeeeeeeecCCCcceecCCCCChhH
Confidence 999999984 578899999999999999999987 544
No 57
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.68 E-value=5.1e-16 Score=151.14 Aligned_cols=169 Identities=18% Similarity=0.098 Sum_probs=124.4
Q ss_pred HHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHH
Q 010043 253 RKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALW 330 (519)
Q Consensus 253 ~~~~~~~~~~Lgi~fd~--~~es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~ 330 (519)
.+.+.++++.||+..|. ...|.+.+.-.+.+++|.++| |.|+|.. |..+
T Consensus 53 ~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g--------------------------g~p~Y~l---a~vv 103 (230)
T cd00418 53 VESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG--------------------------GYPLYNF---VHPV 103 (230)
T ss_pred HHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC--------------------------CCccccc---cccc
Confidence 35667799999998863 223444456788999999998 8889974 7778
Q ss_pred hhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH
Q 010043 331 YRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (519)
Q Consensus 331 ~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~ 410 (519)
+.. ..+.++|| +|.||....++...+++++|+. .+.+.|++ ++.+.+|+|||||+|+ .+++++.+++.
T Consensus 104 DD~-~~gIThVi--RG~D~l~st~~q~~l~~~Lg~~------~P~~~H~p--ll~~~~g~KLSKr~~~-~~i~~~r~~G~ 171 (230)
T cd00418 104 DDA-LMGITHVL--RGEDHLDNTPIQDWLYEALGWE------PPRFYHFP--RLLLEDGTKLSKRKLN-TTLRALRRRGY 171 (230)
T ss_pred ccc-ccCCCEEE--ECHhhhhchHHHHHHHHHcCCC------CCeEEEee--eeeCCCCCCccCcCCC-cCHHHHHHCCC
Confidence 887 68999997 9999999999988999999994 46899984 6888899999999996 68999887654
Q ss_pred HH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC
Q 010043 411 NR--SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 411 ~~--a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~g 468 (519)
.. ..+.+..-|-.+. ++.++..+. +++..|.++.-..++..||++++..+|.
T Consensus 172 ~p~ai~~~l~~lG~~~~-~~~~~~~~~-----~li~~f~~~~~~~~~~~~d~~kL~~~N~ 225 (230)
T cd00418 172 LPEALRNYLALIGWSKP-DGHELFTLE-----EMIAAFSVERVNSADATFDWAKLEWLNR 225 (230)
T ss_pred cHHHHHHHHHHcCCCCC-CCccccCHH-----HHHHhcCHhhCCCCCcccCHHHHHHHHH
Confidence 33 2333332221110 111222222 2567788888888999999999988854
No 58
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.66 E-value=7.8e-16 Score=150.50 Aligned_cols=167 Identities=15% Similarity=0.038 Sum_probs=122.4
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHH
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (519)
=+.|+|||+|||||+|++++.+.+|| ++++...--+.|..... +
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r---------------------~---------- 48 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT---------------------K---------- 48 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc---------------------c----------
Confidence 57899999999999999999999999 67777777777742200 0
Q ss_pred hcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHHHHCCCe
Q 010043 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLV 292 (519)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~es~~~~~v~~vi~~L~~~g~~ 292 (519)
. ....+.+.+.++++.||+..|. ...|.+.+...+++++|.++|.+
T Consensus 49 ----~-----------------------------~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 49 ----R-----------------------------PDPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred ----c-----------------------------chHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCCc
Confidence 0 0112223477799999997652 12344555678889999999999
Q ss_pred EeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCC
Q 010043 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (519)
Q Consensus 293 ~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~ 372 (519)
|.. .....++++ .|+|. +|..++.. ..+.+++| .|.|+....+++..+.++||+.
T Consensus 96 Y~~--------~~~~~~~~i-----~ptY~---la~vVDD~-~~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~------ 150 (240)
T cd09287 96 YVH--------PRTGSKYRV-----WPTLN---FAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYEYFGWE------ 150 (240)
T ss_pred ccC--------cccCCcEEE-----EEccc---cceeeecc-ccCCCeEE--echhhhhCCHHHHHHHHHcCCC------
Confidence 961 001124444 27776 47777877 57999997 9999999988888999999995
Q ss_pred CCcEEEEEeEEEEcCCCcceeeecC
Q 010043 373 YPKASHVGFGLVLGEDGKRLRTRFS 397 (519)
Q Consensus 373 ~~~~~Hv~~g~V~~~~g~kmSkR~G 397 (519)
.+.+.|++ ++.+ +|+|||||++
T Consensus 151 ~P~~~H~p--ll~~-~~~kLSKR~~ 172 (240)
T cd09287 151 YPETIHWG--RLKI-EGGKLSTSKI 172 (240)
T ss_pred CCcEEeee--eecC-CCCeeccccc
Confidence 36889996 4664 4799999995
No 59
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.65 E-value=9.3e-15 Score=170.76 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=98.5
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+.+..|--.-|||||.|||||+++.++.|+++|..|..||+|......+++|.++...+..- .... .+....+
T Consensus 47 ~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~---l~~~---~~~~~~~- 119 (1052)
T PRK14900 47 RPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKE---LKKT---EKKSRHD- 119 (1052)
T ss_pred CCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHH---hhhc---cCCChhh-
Confidence 45688889999999999999999999999999999999999999999999999986544211 0000 0000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es-----~~~~~v~~ 281 (519)
+ |.++.++..+++.+.+...+++.+++||+.+||..+. .|...+.+
T Consensus 120 ----------~-------------------~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 170 (1052)
T PRK14900 120 ----------L-------------------GREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVRE 170 (1052)
T ss_pred ----------C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHH
Confidence 0 0111223334557778889999999999999997653 34457999
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|+
T Consensus 171 ~F~~L~~~Gliyr 183 (1052)
T PRK14900 171 VFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999985
No 60
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.9e-15 Score=159.59 Aligned_cols=140 Identities=20% Similarity=0.182 Sum_probs=109.1
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.| |+.|+||.|||.. |..++.. ..+.+|+| .|.||....+++..+.++|||. .|.+.|+ ++|++.
T Consensus 182 ~d-v~~r~dg~ptY~f---avvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~------~P~~~H~--~li~~~ 246 (472)
T COG0008 182 DF-VILRYDGYPTYNF---AVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWP------PPVYAHL--PLLLNE 246 (472)
T ss_pred cc-eeecCCCCcccce---eeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCC------CCcEEEe--eeeecC
Confidence 35 9999999999984 6667776 57999997 9999999999999999999995 3789998 678889
Q ss_pred CCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~ 465 (519)
+|+|||||+| .+.+.++.+.+. .+..+.+.-++.. ++++..+..+.. ..+..|+++....++..||.+++..
T Consensus 247 ~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~--~~~~~~e~f~~~---~~~~~fd~~~~~~~~~~fd~~kL~~ 320 (472)
T COG0008 247 DGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRG--YPPEAIEIFSLE---EGIKWFDLTIVSKSPAAFDRKKLDW 320 (472)
T ss_pred CCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCC--CChhhHHHHHHH---HHHhhhhhhhhhcccccccHHHhHh
Confidence 9999999999 888887777765 3345555444321 223444444333 3578899999999999999999988
Q ss_pred ccC
Q 010043 466 DKG 468 (519)
Q Consensus 466 ~~g 468 (519)
.++
T Consensus 321 ~n~ 323 (472)
T COG0008 321 LNP 323 (472)
T ss_pred hhH
Confidence 764
No 61
>PLN02943 aminoacyl-tRNA ligase
Probab=99.64 E-value=2.4e-14 Score=166.06 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
++++.+|.-.-|||||+|||||+++.++.|+++|..|..||+|......+.+|..+...++...... +.
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~-------~~---- 154 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASE-------GI---- 154 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHc-------CC----
Confidence 3556899888999999999999999999999999999999999999999999987765542110000 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es-----~~~~~v~ 280 (519)
++ .+..++ +.++..+++++.+...+++.+++||+.+||..+. .|...+.
T Consensus 155 --------------~~--~~~~re----------~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 208 (958)
T PLN02943 155 --------------KR--TDLGRD----------EFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208 (958)
T ss_pred --------------Ch--hhCCHH----------HHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 00 000111 1223344567888889999999999999996552 3445799
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
+++.+|.++|++|+
T Consensus 209 ~~F~~l~~~Gliyr 222 (958)
T PLN02943 209 EAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999885
No 62
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.61 E-value=4.6e-15 Score=148.17 Aligned_cols=184 Identities=16% Similarity=0.180 Sum_probs=130.4
Q ss_pred CCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhc
Q 010043 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKN 215 (519)
Q Consensus 136 SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (519)
.|+|||+|||||+|++++-..+|| ++-|-=+.| |.|...+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR---iEDtD~~----------------------------------- 45 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR---IEDLDPP----------------------------------- 45 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCcCCCC-----------------------------------
Confidence 699999999999999999888888 344444444 3442110
Q ss_pred ccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCeE
Q 010043 216 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVE 293 (519)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~es~~~~~v~~vi~~L~~~g~~~ 293 (519)
+....+.+.+.++++.||++.|. ...|.+.+.-.+++++|.++|.+|
T Consensus 46 -------------------------------R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY 94 (272)
T TIGR03838 46 -------------------------------REVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAY 94 (272)
T ss_pred -------------------------------CCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEE
Confidence 00112234556688888888762 123444456678888888888887
Q ss_pred e-------------e-----cC--------------eEEEEec-----------C--------CCCCeEEEcCCCCcccc
Q 010043 294 E-------------S-----QG--------------ARVIFIE-----------G--------VNIPLIIVKSDGGFNYA 322 (519)
Q Consensus 294 ~-------------~-----dG--------------a~~~~~~-----------g--------~~~d~Vl~ksDG~~tY~ 322 (519)
. . +| ++-+++. | ...|+||.|+||.|||.
T Consensus 95 ~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~ 174 (272)
T TIGR03838 95 PCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQ 174 (272)
T ss_pred ecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCcccc
Confidence 2 0 01 1112221 1 12589999999999998
Q ss_pred chhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccH
Q 010043 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (519)
Q Consensus 323 t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 402 (519)
. |..++.. ..+.+||| .|.||....+++..+.++|||. .+.+.|++ +|.+.+|+|||||+|.. ++
T Consensus 175 f---A~vVDD~-~~gIThVi--RG~D~l~~t~~q~~l~~aLg~~------~P~y~H~p--ll~~~~g~kLSKR~~~~-~i 239 (272)
T TIGR03838 175 L---AVVVDDA-AQGITHVV--RGADLLDSTPRQIYLQRLLGLP------PPRYLHLP--LVVNADGEKLSKQNGAP-AL 239 (272)
T ss_pred C---hhhhhcc-cCCCCEEE--eCHhhhhccHHHHHHHHHhCCC------CCeEEech--hhhCCCCCeeeccCCcc-ch
Confidence 5 7778887 68999997 9999999888888999999995 36899984 58889999999999954 56
Q ss_pred HHH
Q 010043 403 VDL 405 (519)
Q Consensus 403 ~dl 405 (519)
+++
T Consensus 240 ~~~ 242 (272)
T TIGR03838 240 DLS 242 (272)
T ss_pred hcC
Confidence 554
No 63
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.61 E-value=1.3e-14 Score=161.28 Aligned_cols=133 Identities=21% Similarity=0.288 Sum_probs=93.0
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
++++..|-..-||++|+|||||+++.++.|+++|..+..||+|......+-+|.++...+.. .++... ...
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~---~~~--- 91 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE---KKD--- 91 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS---HHH---
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc---ccc---
Confidence 46788899999999999999999999999999999999999999999999999999765432 111100 000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~ 280 (519)
...+ |.++.++..+++++.+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 92 --------~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~ 144 (601)
T PF00133_consen 92 --------RKDL-------------------GREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVW 144 (601)
T ss_dssp --------CSCS-------------------THHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHH
T ss_pred --------cccc-------------------ccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHH
Confidence 0001 111222344556788889999999999999998543 23445789
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
.++.+|.++|++|.
T Consensus 145 ~~F~~l~~kglIyr 158 (601)
T PF00133_consen 145 WQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCcEEe
Confidence 99999999999884
No 64
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.60 E-value=8.6e-14 Score=160.89 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=98.0
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+++..|...-|+|+|.|||||++|.++.|+++|..+..||+|......+.+|.++...+... ++-. +...+..+
T Consensus 35 ~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~~---~~~~~~~~ 108 (861)
T TIGR00392 35 KPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK---LGIS---GKKEISSL 108 (861)
T ss_pred CCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHH---hCcc---cccccchh
Confidence 45678889999999999999999999999999999999999999999999999988665311 1100 00000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
..++| ++..++++..+.+.+++.+.+||+.+||..+ ..|...+..
T Consensus 109 ------------~~~~f------------------~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~ 158 (861)
T TIGR00392 109 ------------EIEEF------------------REKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWW 158 (861)
T ss_pred ------------hHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHH
Confidence 00112 2344455677888889999999999988643 334567899
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|.
T Consensus 159 ~f~~l~~~gliyr 171 (861)
T TIGR00392 159 LFKEAHEKGLLYR 171 (861)
T ss_pred HHHHHHHCCCEee
Confidence 9999999998884
No 65
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.58 E-value=3.6e-13 Score=155.94 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=97.9
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++.+|-..-||++|++||||++|.++.|+++|..+..||+|......+-+|.++...+... .+. .
T Consensus 48 ~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~----~------- 113 (912)
T PRK05743 48 KPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK---LGK----K------- 113 (912)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH---cCC----c-------
Confidence 45689989999999999999999999999999999999999999999999999987654321 110 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
...+ ...+|. +..+++++.+.+.+++.+++||+.+||..+ ..|...+.+
T Consensus 114 -------~~~~-~~~~f~------------------~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~ 167 (912)
T PRK05743 114 -------GKKL-SAAEFR------------------KKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIR 167 (912)
T ss_pred -------cccC-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHH
Confidence 0000 011233 333456777888899999999998887543 234567899
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|+
T Consensus 168 ~f~~l~~~Gliy~ 180 (912)
T PRK05743 168 ALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999998874
No 66
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.58 E-value=2.2e-14 Score=144.97 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||.|+||.|+|.. |..++.. ..+.++|| +|.||....+++..+.++|||. .+.+.|++ +|.+.
T Consensus 167 ~D~Vi~R~dg~ptY~l---A~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~------~P~y~H~p--ll~~~ 232 (299)
T PRK05710 167 GDFVLRRADGLFAYQL---AVVVDDA-LQGVTHVV--RGADLLDSTPRQIYLQQLLGLP------TPRYLHLP--LVLNA 232 (299)
T ss_pred CCEEEEecCCCccccc---hhHHhcc-cCCCCEEE--eChhhhhcCHHHHHHHHHcCCC------CCeEEEee--cccCC
Confidence 6899999999999985 7788887 68999997 9999988888888999999995 47899995 58889
Q ss_pred CCcceeeecCCcccHHH
Q 010043 388 DGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~d 404 (519)
+|+|||||.|.. ++++
T Consensus 233 ~g~kLSKr~~~~-~i~~ 248 (299)
T PRK05710 233 DGQKLSKQNGAP-ALDA 248 (299)
T ss_pred CCCcccccCCcc-chhh
Confidence 999999999954 5554
No 67
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.56 E-value=2.8e-15 Score=138.58 Aligned_cols=78 Identities=42% Similarity=0.693 Sum_probs=66.8
Q ss_pred HhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCCChhhhhhcC-CCCCCHHhHHHHhhc
Q 010043 437 AVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKVG-LVFEVEALTMFQRLS 514 (519)
Q Consensus 437 ~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~silrka~~~~~~~~~~~-~~l~~~~e~~l~~~~ 514 (519)
++|++|+||++|+++++++++|||+++++++|||+|||||||+|++||++|++.+.....+.+ ..|.+++|++|.+.-
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l 80 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLL 80 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999874211112344 678999999998763
No 68
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.1e-13 Score=140.93 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=157.6
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++..+.-.==.|+.+.|+||+.++++.|+|||.-+..|-.|......+..|..|...++.- +-.|..
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn----------G~~P~e- 105 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN----------GRNPPE- 105 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc----------CCChHH-
Confidence 344444433333567799999999999999999999999999999999999998877665321 112222
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-e--eccccccCcHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGV 282 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~--~~es~~~~~v~~v 282 (519)
+|+..-+.|.+....+||.++ + ..+.-+...|++.
T Consensus 106 ------------------------------------------~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqef 143 (578)
T KOG0436|consen 106 ------------------------------------------LCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEF 143 (578)
T ss_pred ------------------------------------------HHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHH
Confidence 334444455555566677763 2 2344455567777
Q ss_pred HHHHHHCCCeEee--cCeEEEEec---------------C-----CCCCeEEEcCCCCc---------------------
Q 010043 283 IDELSKQGLVEES--QGARVIFIE---------------G-----VNIPLIIVKSDGGF--------------------- 319 (519)
Q Consensus 283 i~~L~~~g~~~~~--dGa~~~~~~---------------g-----~~~d~Vl~ksDG~~--------------------- 319 (519)
.+.+..+|++|.. +|-.|+.-+ | ..+.-|++++.-.+
T Consensus 144 w~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~f 223 (578)
T KOG0436|consen 144 WARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRF 223 (578)
T ss_pred HHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCc
Confidence 7777777777753 354444321 0 00111222221111
Q ss_pred -------------------------------------------cccchh--------HHHHHhhhh-----hcCCCeEEE
Q 010043 320 -------------------------------------------NYASTD--------LAALWYRLN-----EEKAEWIIY 343 (519)
Q Consensus 320 -------------------------------------------tY~t~D--------iA~~~~r~~-----~~~~d~~I~ 343 (519)
.|.==| |+|-.++.. ..+--..+.
T Consensus 224 vqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~H 303 (578)
T KOG0436|consen 224 VQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLH 303 (578)
T ss_pred cCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceee
Confidence 111000 111111100 001112355
Q ss_pred EecCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcC
Q 010043 344 VTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGK 422 (519)
Q Consensus 344 V~g~~q~-~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~ 422 (519)
|+|.|-. .|.--.-+.+.++|.++ ....++| |.-+ .+|.||||+.||+|...++++.
T Consensus 304 vIGKDIlrFHavYWPafLmaAGlpl----P~~I~vH---ghwt-~ngmKMsKSLGNvvdP~~l~~k-------------- 361 (578)
T KOG0436|consen 304 VIGKDILRFHAVYWPAFLMAAGLPL----PKMIFVH---GHWT-KNGMKMSKSLGNVVDPFELVQK-------------- 361 (578)
T ss_pred ehhhhhhhhhhhhhHHHHHhcCCCC----ccEEEEe---eeee-ecceecchhhccccCHHHHHHH--------------
Confidence 6666621 11111223456778742 2234555 3344 5699999999999999999887
Q ss_pred CCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhcccC-CchhHHHHHHHHHHH
Q 010043 423 DKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKG-NTAVYLLYAHARICS 483 (519)
Q Consensus 423 ~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd~~~~~~~~g-nt~~YiqYa~aR~~s 483 (519)
+|++++|||+|+... ..+-+|+.+++....+ .-.--+-.-..|+|+
T Consensus 362 ---------------ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~g 409 (578)
T KOG0436|consen 362 ---------------YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLG 409 (578)
T ss_pred ---------------hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999775 8899999999877542 222233333478887
No 69
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=8.1e-14 Score=142.49 Aligned_cols=146 Identities=17% Similarity=0.167 Sum_probs=110.4
Q ss_pred CeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcE
Q 010043 297 GARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKA 376 (519)
Q Consensus 297 Ga~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~ 376 (519)
|.++..++....|.||+||||-|||.. |..++.. ..+..||| +|++|.........+.+|+||.| |++
T Consensus 201 G~v~~~~d~~~gD~VvmKSDgfPTYHf---AnVVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~p------PkF 268 (524)
T KOG1149|consen 201 GKVNHNVDSNEGDPVVMKSDGFPTYHF---ANVVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQP------PKF 268 (524)
T ss_pred hhhhccccccCCCcEEEecCCCcceee---eeeecch-hcchhhee--ecchhccccHHHHHHHHHhCCCC------Cce
Confidence 444333333357899999999999995 6767776 57899998 99999888888888899999974 789
Q ss_pred EEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhc-----CCCCCCHHHHHHHHHHhhhhHHHHHhhc
Q 010043 377 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERG-----KDKEWTEEELEQTAEAVGYGAAKYFDLK 449 (519)
Q Consensus 377 ~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~-----~~~~~~~~e~~~~a~~vg~~avry~~L~ 449 (519)
.|++. +.++||+|+|||.|. +.++++.+++. +..++.+..-| ++..++-+|+ +--|.+.
T Consensus 269 aHlpL--l~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eL-----------ieqF~i~ 334 (524)
T KOG1149|consen 269 AHLPL--LLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEEL-----------IEQFSIE 334 (524)
T ss_pred eeeee--eecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHH-----------HHHhchh
Confidence 99974 778999999999995 58999988876 44677665442 1222333332 3347888
Q ss_pred CCCCCCccccHHHHhcccC
Q 010043 450 NNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 450 ~~~~~~~~Fd~~~~~~~~g 468 (519)
+-..++..||.+++..+|+
T Consensus 335 ~ltk~~a~ld~ekL~~~Nr 353 (524)
T KOG1149|consen 335 RLTKSNAILDSEKLRFLNR 353 (524)
T ss_pred hhcccccccCHHHHHHHHH
Confidence 8888899999999988864
No 70
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.52 E-value=2.1e-12 Score=150.21 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=97.5
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++.+|--.-||+||.|||||++|.++.|+++|..+..||+|......+.+|.++..-+. +..+. .
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~ve---k~l~~------~---- 96 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVL---QSLDQ------E---- 96 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHH---HHhch------h----
Confidence 3567899899999999999999999999999999999999999999999999999874321 11110 0
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~ 280 (519)
....+ ...+| ++..+++++.+...+++.+.+||+..||..+ ..|...+.
T Consensus 97 -------~~~~~-~~~~f------------------~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~ 150 (974)
T PLN02843 97 -------ARKEL-TPIKL------------------RAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQI 150 (974)
T ss_pred -------hhccC-CHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHH
Confidence 00001 00122 2344556677778889999999998887533 23456789
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
+++.+|.++|++|+
T Consensus 151 ~~f~~l~~~GlIyr 164 (974)
T PLN02843 151 EVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999998884
No 71
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.47 E-value=6.3e-13 Score=142.79 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=65.3
Q ss_pred cCeEEEEecCC-------CCCeEEEcCCCCc---------cccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHH
Q 010043 296 QGARVIFIEGV-------NIPLIIVKSDGGF---------NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359 (519)
Q Consensus 296 dGa~~~~~~g~-------~~d~Vl~ksDG~~---------tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i 359 (519)
+|..++++..+ -.|.|+.|+||++ .|.|=|+|..++.. ..+.+|+| .|.||..+.++...+
T Consensus 147 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q~~l 223 (523)
T PLN03233 147 GGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDS-IEGVTHAL--RTTEYDDRDAQFFWI 223 (523)
T ss_pred CCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeecc-ccCCCeEE--echhhhcCCHHHHHH
Confidence 45666666532 2588999999863 23333457777776 57999997 999999999999899
Q ss_pred HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec
Q 010043 360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (519)
Q Consensus 360 ~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 396 (519)
+++||+. .+.+ |. |+.+ +..|.+||||+
T Consensus 224 ~~aLg~~------~P~~-~~-f~rl-n~~~~kLSKR~ 251 (523)
T PLN03233 224 QKALGLR------RPRI-HA-FARM-NFMNTVLSKRK 251 (523)
T ss_pred HHHhCCC------CCee-ee-eEEE-CCCCCcccccC
Confidence 9999994 3555 44 6655 46788999997
No 72
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.45 E-value=9.4e-13 Score=142.88 Aligned_cols=129 Identities=10% Similarity=0.076 Sum_probs=88.3
Q ss_pred CCeEEEcCC------------CCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 010043 308 IPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 375 (519)
Q Consensus 308 ~d~Vl~ksD------------G~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~ 375 (519)
.|.|+.|.+ |.|||. +|..++.. ..+.+|+| .|.||..+.++...++++||+. .+.
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~------~P~ 275 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIR------KPI 275 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCC------Cce
Confidence 477888754 667775 57777776 57999997 9999999999988999999995 368
Q ss_pred EEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH----HHhhhhHHH-HHhhcC
Q 010043 376 ASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA----EAVGYGAAK-YFDLKN 450 (519)
Q Consensus 376 ~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a----~~vg~~avr-y~~L~~ 450 (519)
+.|.+ + ++.+|.+||||++ ..+++++. -.+|++..+-++. +-+.++++| |+....
T Consensus 276 ~~h~~--r-Ln~~g~kLSKRkl-----~~lv~~g~------------v~GWdDprlpTi~glrRrG~~peai~~f~~~~G 335 (601)
T PTZ00402 276 VEDFS--R-LNMEYSVMSKRKL-----TQLVDTHV------------VDGWDDPRFPTVRALVRRGLKMEALRQFVQEQG 335 (601)
T ss_pred EEEEe--e-EcCCCCcccccCC-----hhhhhcCc------------ccccCCCccHhHHHHHHcCCCHHHHHHHHHHhC
Confidence 89985 4 4688999999998 44555432 1122221111111 112344444 455555
Q ss_pred CCCCCccccHHHHhcccC
Q 010043 451 NRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 451 ~~~~~~~Fd~~~~~~~~g 468 (519)
-..++..|||+++.+++.
T Consensus 336 vsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 336 MSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred CCCCCcccCHHHHHHHHH
Confidence 668899999999877743
No 73
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.43 E-value=9.3e-13 Score=128.52 Aligned_cols=219 Identities=15% Similarity=0.049 Sum_probs=137.3
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHH
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (519)
=..|+|||+||+||+|++++....||-. .|-=+.| +.|...
T Consensus 5 RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLR---ieDtD~---------------------------------- 45 (238)
T cd00807 5 RFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLR---FDDTNP---------------------------------- 45 (238)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE---ecCCCC----------------------------------
Confidence 4569999999999999999988888752 3332222 344211
Q ss_pred hcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHHHHCCCe
Q 010043 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLV 292 (519)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es~~~~~v~~vi~~L~~~g~~ 292 (519)
. +.+..+.+.+.++++.||+..| ....|.+.+.-.+++++|.++|.+
T Consensus 46 --------~------------------------R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~a 93 (238)
T cd00807 46 --------E------------------------KEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKA 93 (238)
T ss_pred --------c------------------------ccchHHHHHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCe
Confidence 0 0112233566779999999987 222344455678999999999999
Q ss_pred EeecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCC
Q 010043 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (519)
Q Consensus 293 ~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~ 372 (519)
|..- .+| .+.++ .|+|. +|..++.. ..+.+++| .|.||....+++..+.++||+.+
T Consensus 94 Y~~~------~~~--~~~~i-----~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~~----- 149 (238)
T cd00807 94 YVHH------RTG--DKWCI-----YPTYD---FAHPIVDS-IEGITHSL--CTLEFEDRRPSYYWLCDALRLYR----- 149 (238)
T ss_pred ecCC------CCC--CCEEE-----Eeccc---cceEeecc-ccCCCeEE--echhhhcCCHHHHHHHHHcCCCC-----
Confidence 9821 011 12233 37776 57778887 57999997 99999998888889999999952
Q ss_pred CCcEEEEEeEEEEcCCCcceeeecCCcccHHHHH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhh
Q 010043 373 YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL----DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 448 (519)
Q Consensus 373 ~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll----~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L 448 (519)
+.+.|. +.+ +.+|+|||||+|.. .+++.. +.........+..+| + -++|++-|+.
T Consensus 150 -P~~~~~--~hl-n~~g~kLSKR~~~~-~i~~g~~~~wddpr~~~~~~l~~~G----~------------~peal~~~l~ 208 (238)
T cd00807 150 -PHQWEF--SRL-NLTYTVMSKRKLLQ-LVDEGYVDGWDDPRLPTLRGLRRRG----V------------TPEAIRQFIL 208 (238)
T ss_pred -CceeEE--EEE-CCCCCCccCcCchh-ccccCCcccccCcchHHHHHHHHcC----C------------CHHHHHHHHH
Confidence 443332 334 58899999999732 111100 000000111122211 1 2444544444
Q ss_pred c-CCCCCCccccHHHHhcccC
Q 010043 449 K-NNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 449 ~-~~~~~~~~Fd~~~~~~~~g 468 (519)
. .-..++..|||+++.++|.
T Consensus 209 ~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 209 RQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred HhCCCCCCcccCHHHHHHHHH
Confidence 3 3467999999999988753
No 74
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.42 E-value=1.4e-12 Score=141.46 Aligned_cols=239 Identities=15% Similarity=0.088 Sum_probs=146.2
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
.+|+. =..|+|||+|||||+|++++-+.+|| .|+....--++|.... .
T Consensus 92 ~~vvt-RFaPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~------------------R-------- 139 (560)
T TIGR00463 92 GEVVM-RFAPNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR------------------R-------- 139 (560)
T ss_pred CeeEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc------------------c--------
Confidence 45655 55699999999999999999999996 2334444445663220 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 286 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es~~~~~v~~vi~~L 286 (519)
. ...+.+.+.++++.||+..| ....|.|.+...+.++.|
T Consensus 140 -----------~-----------------------------~~e~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~L 179 (560)
T TIGR00463 140 -----------V-----------------------------KPEAYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKL 179 (560)
T ss_pred -----------c-----------------------------cHHHHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHH
Confidence 0 01122345556677777654 222344445566666777
Q ss_pred HHCCCeEe----------------------------------------ecCeEEEEecC-------CCCCeEEEcCCCCc
Q 010043 287 SKQGLVEE----------------------------------------SQGARVIFIEG-------VNIPLIIVKSDGGF 319 (519)
Q Consensus 287 ~~~g~~~~----------------------------------------~dGa~~~~~~g-------~~~d~Vl~ksDG~~ 319 (519)
.++|.+|. .+|..++++.- .-.|.|+.|.++++
T Consensus 180 i~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~ 259 (560)
T TIGR00463 180 IEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTP 259 (560)
T ss_pred HHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCC
Confidence 77776662 12344555531 11478888887753
Q ss_pred c---------ccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc
Q 010043 320 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (519)
Q Consensus 320 t---------Y~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~ 390 (519)
- |.|=|+|..++.. ..|.+|+| .|.||....++...+..++|+. .+.+.|.+ ++.+.+|.
T Consensus 260 h~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~------~P~~~h~~--~l~~~~~~ 328 (560)
T TIGR00463 260 HPRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWE------LPEFIHWG--RLKINDVR 328 (560)
T ss_pred ccccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCeEEEEc--ceecCCCc
Confidence 2 4455567777776 57999997 9999988777777788899994 36889985 57778888
Q ss_pred ceeeecCCcccHHH-HH---HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhc
Q 010043 391 RLRTRFSEVVRLVD-LL---DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLN 465 (519)
Q Consensus 391 kmSkR~G~~v~l~d-ll---~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~~~ 465 (519)
++|||...-. +.+ .+ |.-.......+..|| +-++|+|-|++..- ..++..++|+.+-+
T Consensus 329 kLskk~k~~~-l~~g~~~gWdDPr~~ti~~lrrrG----------------~~peAi~~f~~~~G~s~~~~~i~~~~l~~ 391 (560)
T TIGR00463 329 TLSTSSKLKG-IVRGDYSGWDDPRLPTLRAVRRRG----------------ITPEAIRNFMLSIGVKRNDVNLSWKNIYA 391 (560)
T ss_pred Eecchhhhhh-hhccCccCcCCccHHHHHHHHHCC----------------CCHHHHHHHHHHhCCCCCCceeeHHHHHH
Confidence 8998764110 000 00 000011122233332 34677777777654 46778888888755
Q ss_pred c
Q 010043 466 D 466 (519)
Q Consensus 466 ~ 466 (519)
+
T Consensus 392 ~ 392 (560)
T TIGR00463 392 F 392 (560)
T ss_pred H
Confidence 4
No 75
>PLN02907 glutamate-tRNA ligase
Probab=99.42 E-value=1.5e-12 Score=146.08 Aligned_cols=131 Identities=13% Similarity=0.106 Sum_probs=86.8
Q ss_pred CCeEEEcCCCCcc---------ccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEE
Q 010043 308 IPLIIVKSDGGFN---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASH 378 (519)
Q Consensus 308 ~d~Vl~ksDG~~t---------Y~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~H 378 (519)
.|.|+.|.||++- |.|=|+|..++.. ..+.+|+| .|.||..+-++...++++||+.. +...|
T Consensus 368 ~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~~------p~~~~ 438 (722)
T PLN02907 368 RDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLRK------VHIWE 438 (722)
T ss_pred ccCEEEEecCCcccccCCccceeeccCCceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCCC------CeeEE
Confidence 4789999998321 2333356666765 57999997 99999999999989999999942 22222
Q ss_pred EEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH----hhhhHHHHHhhc-CCCC
Q 010043 379 VGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA----VGYGAAKYFDLK-NNRL 453 (519)
Q Consensus 379 v~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~----vg~~avry~~L~-~~~~ 453 (519)
|+.+ +.+|.+||||+ |..+++++. -.+|++..+-++... +-++|++=|++. .-..
T Consensus 439 --f~~l-~~~~~~lSKR~-----l~~~v~~g~------------v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~ 498 (722)
T PLN02907 439 --FSRL-NFVYTLLSKRK-----LQWFVDNGK------------VEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASK 498 (722)
T ss_pred --EEEE-cCCCccccccc-----hHhHhhcCc------------ccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCc
Confidence 3544 46788999998 566666632 224443332222222 346666665555 4457
Q ss_pred CCccccHHHHhccc
Q 010043 454 TNYTFSFDQMLNDK 467 (519)
Q Consensus 454 ~~~~Fd~~~~~~~~ 467 (519)
++..|||+++.+++
T Consensus 499 ~~~~~~~~~l~~~n 512 (722)
T PLN02907 499 NLNLMEWDKLWTIN 512 (722)
T ss_pred CCccccHHHHHHHH
Confidence 88999999987764
No 76
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.36 E-value=1.2e-11 Score=133.55 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=86.5
Q ss_pred cCeEEEEecC----CC---CCeEEEcC-------CC-----CccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHH
Q 010043 296 QGARVIFIEG----VN---IPLIIVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV 356 (519)
Q Consensus 296 dGa~~~~~~g----~~---~d~Vl~ks-------DG-----~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~ 356 (519)
+|..+++..- .+ .|.|+.|+ +| .|||. +|..++.. ..+.+|+| .|.||..+-++.
T Consensus 170 ~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYd---fA~~vdD~-l~gITHvl--Rg~E~~~~t~~~ 243 (554)
T PRK05347 170 EGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYD---FAHCISDA-IEGITHSL--CTLEFEDHRPLY 243 (554)
T ss_pred CCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcC---ccceeecc-ccCCceEE--eccccccChHHH
Confidence 6766776541 11 47888887 47 56665 57777776 57999998 999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCc------c---------cHHHHHHHHHHHHHHHHHHhc
Q 010043 357 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV------V---------RLVDLLDEAKNRSKAVLIERG 421 (519)
Q Consensus 357 ~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~------v---------~l~dll~e~~~~a~~~i~~~~ 421 (519)
..++++||+.. .+... .|+.+ +.+|.+||||++.. + |+..|.+.+
T Consensus 244 ~~i~~alg~~~-----~P~~~--~F~rl-n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG------------ 303 (554)
T PRK05347 244 DWVLDNLPIPP-----HPRQY--EFSRL-NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG------------ 303 (554)
T ss_pred HHHHHHcCCCC-----CCceE--EEEEE-CCCCCccccccchhccccCcccCccCCcchhHHHHHHCC------------
Confidence 99999998621 23222 23444 45788999999642 2 566666654
Q ss_pred CCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhcc
Q 010043 422 KDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND 466 (519)
Q Consensus 422 ~~~~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~~~~ 466 (519)
+-++|++=|++..- ..++..++|+.+-++
T Consensus 304 ----------------~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~ 333 (554)
T PRK05347 304 ----------------YTPESIREFCERIGVTKQDSVIDMSMLESC 333 (554)
T ss_pred ----------------CCHHHHHHHHHHhCCCCCCCeecHHHHHHH
Confidence 23566666665533 356677888776554
No 77
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.26 E-value=1e-10 Score=126.00 Aligned_cols=127 Identities=10% Similarity=-0.044 Sum_probs=86.8
Q ss_pred CccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecC
Q 010043 318 GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (519)
Q Consensus 318 ~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G 397 (519)
.|||. +|..++.. ..+.+|+| .|.||..+-..-..+.+.+++.. .+. +..|+.+ +.+|.+||||++
T Consensus 182 yPtYd---fa~~vdD~-l~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~-----~P~--~~~F~rl-n~~~~kLSKRk~ 247 (522)
T TIGR00440 182 YPMYD---FTHCISDA-MENITHSL--CTLEFQDNRRLYDWVLDNIHIFP-----RPA--QYEFSRL-NLEGTVLSKRKL 247 (522)
T ss_pred EeCcC---Cceeehhc-cCCCceEe--ecHhhhhcHHHHHHHHHhcCccC-----CCc--eEEEEEE-CCCCCCcccccc
Confidence 56665 57777776 57999998 99999998877777777888731 122 2234554 467889999998
Q ss_pred Cc---------------ccHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccH
Q 010043 398 EV---------------VRLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 460 (519)
Q Consensus 398 ~~---------------v~l~dll~e~~~~--a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~ 460 (519)
.. .|+..|.+.+... .++.+..-|-...-+..++..+ -..+|-|++...++.+..||.
T Consensus 248 ~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l-----~~~~r~f~~~~~~r~~av~d~ 322 (522)
T TIGR00440 248 AQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRL-----ESCIREDLNENAPRAMAVIDP 322 (522)
T ss_pred hhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhH-----HHHHHHhhhhcCccccccccc
Confidence 75 3888988887633 4566655432211111122222 245789999999999999999
Q ss_pred HHH
Q 010043 461 DQM 463 (519)
Q Consensus 461 ~~~ 463 (519)
.++
T Consensus 323 ~kl 325 (522)
T TIGR00440 323 VEV 325 (522)
T ss_pred ceE
Confidence 997
No 78
>PLN02859 glutamine-tRNA ligase
Probab=99.23 E-value=1.1e-10 Score=130.02 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred ccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCc
Q 010043 321 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (519)
Q Consensus 321 Y~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~ 399 (519)
|-|=|+|..++.. ..+.+|+| .|.||..+-++...++++||+. .+.+.|. + .++.+|.+||||++..
T Consensus 441 yPtYdFA~~vdD~-legITHvL--Rg~E~~~~~~~y~wl~~aLg~~------~P~~~~f--~-rLn~~~t~LSKRkl~~ 507 (788)
T PLN02859 441 YPSYDYAHCIVDS-LENITHSL--CTLEFETRRASYYWLLDSLGLY------QPYVWEY--S-RLNVTNTVMSKRKLNR 507 (788)
T ss_pred Eeccccccccccc-ccCCceEe--echhhhcCCHHHHHHHHHcCCC------CCcEEee--e-eECCCCCcccCcCchh
Confidence 4445567777776 57999998 9999999999888899999995 3677887 4 5568899999999864
No 79
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.21 E-value=3e-10 Score=127.62 Aligned_cols=133 Identities=14% Similarity=0.012 Sum_probs=81.2
Q ss_pred cCeEEEEecC-------CCCCeEEEcCCCCc---------cccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHH
Q 010043 296 QGARVIFIEG-------VNIPLIIVKSDGGF---------NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359 (519)
Q Consensus 296 dGa~~~~~~g-------~~~d~Vl~ksDG~~---------tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i 359 (519)
+|..++++.. .-.|.|+.|.++++ .|-|=|+|..++.. ..+.+|+| .|.||..+-+....+
T Consensus 172 ~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~-l~gITHvl--Rg~E~~~~~~~~~~l 248 (771)
T PRK14703 172 DGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDA-IEGVTHSI--CTLEFENNRAIYDWV 248 (771)
T ss_pred CCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeecc-ccCCcEEE--ecHhhhhccHHHHHH
Confidence 5666666641 11378888875322 23333467666765 57999998 999999998988889
Q ss_pred HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec-------CCcc--------cHHHHHHHHHHHHHHHHHHhcCCC
Q 010043 360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-------SEVV--------RLVDLLDEAKNRSKAVLIERGKDK 424 (519)
Q Consensus 360 ~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~-------G~~v--------~l~dll~e~~~~a~~~i~~~~~~~ 424 (519)
+++||+.+ ..+... .|+.+.. .|.+||||+ |.+- |+..|...+
T Consensus 249 ~~~l~~~~----~~P~~~--~f~rl~l-~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG--------------- 306 (771)
T PRK14703 249 LDHLGPWP----PRPRQY--EFARLAL-GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRG--------------- 306 (771)
T ss_pred HHHhCCCC----CCccee--EEEEecc-CCCcccccCchhccccCcccCCCCCchhhHHHHHHCC---------------
Confidence 99996421 112221 2344443 467899998 4321 344444432
Q ss_pred CCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhcc
Q 010043 425 EWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND 466 (519)
Q Consensus 425 ~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~~~~ 466 (519)
+-++|+|=|++..- ..++..+||+.+.+.
T Consensus 307 -------------~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 307 -------------VTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred -------------CCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 33567776665533 456777888776443
No 80
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.08 E-value=1.6e-09 Score=127.21 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=98.7
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++++|...-|||||.|||||+++.++.|+++|..|..|++|......+.+|..+...++.-.. .. .+....+
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~--~~----~~~~~~~ 131 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLM--KE----ENKTRHD 131 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHH--Hh----cCCChHH
Confidence 35679999999999999999999999999999999999999999999999999876544321100 00 0010110
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es-----~~~~~v~ 280 (519)
+ |.++.++..+++++.+...+++.+++||+.+||..+. .|...+.
T Consensus 132 ~------------------------------~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~ 181 (995)
T PTZ00419 132 L------------------------------GREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVK 181 (995)
T ss_pred c------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHH
Confidence 0 1112223344557788889999999999999986542 2345789
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
+++.+|.++|++|+
T Consensus 182 ~~F~~l~~~Gliyr 195 (995)
T PTZ00419 182 EAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999996
No 81
>PLN02381 valyl-tRNA synthetase
Probab=99.07 E-value=1.3e-09 Score=127.96 Aligned_cols=133 Identities=18% Similarity=0.228 Sum_probs=99.3
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++.+|....||+||+|||||+++.++.|+++|..|..||+|......+.+|..+...+.. ..... .+....+
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek---~l~~~---~~~~~~~ 199 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEK---KLMRE---RHLTRHD 199 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHH---HhHhh---cCCChhh
Confidence 35668999999999999999999999999999999999999999999999999988654421 00000 0000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es-----~~~~~v~ 280 (519)
+ |.++.++..+++++.+...+++.+++||+.+||..+- .|...+.
T Consensus 200 -----------~-------------------~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~ 249 (1066)
T PLN02381 200 -----------I-------------------GREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVT 249 (1066)
T ss_pred -----------C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHH
Confidence 0 0111223344567788889999999999999986553 3445799
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
+++..|.++|++|.
T Consensus 250 ~~F~~L~~~GlIyr 263 (1066)
T PLN02381 250 EAFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999995
No 82
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.07 E-value=1.5e-09 Score=124.55 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=90.2
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+..|--.-|+|+|+|||||+++.++.|+++|.+|..|++|......+++|.++..-+.. .+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-----------~g-------- 93 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIK-----------TG-------- 93 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHH-----------cC--------
Confidence 44443334999999999999999999999999999999999999999999987533210 00
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVI 283 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~vi 283 (519)
..| +++++...+.+++.+++||+.+||..+ ..|...+++++
T Consensus 94 ----------~~~------------------------~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f 139 (805)
T PRK00390 94 ----------THP------------------------AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIF 139 (805)
T ss_pred ----------CCH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHH
Confidence 001 134666778899999999999997433 34556799999
Q ss_pred HHHHHCCCeEeecC
Q 010043 284 DELSKQGLVEESQG 297 (519)
Q Consensus 284 ~~L~~~g~~~~~dG 297 (519)
.+|.++|++|..+.
T Consensus 140 ~~L~~~Gliy~~~~ 153 (805)
T PRK00390 140 LKLYEKGLAYRKES 153 (805)
T ss_pred HHHHHCCCEEEecC
Confidence 99999999997543
No 83
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.06 E-value=1.6e-09 Score=124.59 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=90.3
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++..|--.-|+|+|.|||||+|+.+++|+++|.+|..||+|......+++|.++...+.. .+
T Consensus 29 ~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-----------~g------- 90 (842)
T TIGR00396 29 PKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIK-----------RG------- 90 (842)
T ss_pred CCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHH-----------cC-------
Confidence 344443469999999999999999999999999999999999999999999987643210 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~v 282 (519)
..| .++++.....+++.+++||+.+||..+ ..|...++++
T Consensus 91 -----------~~p------------------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~ 135 (842)
T TIGR00396 91 -----------IHP------------------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWI 135 (842)
T ss_pred -----------CCH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHH
Confidence 001 124566678889999999999988543 3345678999
Q ss_pred HHHHHHCCCeEeec
Q 010043 283 IDELSKQGLVEESQ 296 (519)
Q Consensus 283 i~~L~~~g~~~~~d 296 (519)
+.+|.++|++|+.+
T Consensus 136 F~~L~~kGliy~~~ 149 (842)
T TIGR00396 136 FLELFEKGLAYVKE 149 (842)
T ss_pred HHHHHHCCCeEeec
Confidence 99999999999643
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.4e-09 Score=122.37 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=94.8
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
+|..|-..=|.|+|.|||||+|+.++||++||..|..||+|..-...+=+|.++...|...
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~------------------- 94 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI------------------- 94 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------------------
Confidence 4777878899999999999999999999999999999999999999999999876443211
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~v 282 (519)
..+|. .+.+.....+++.+++||..+||.+| ..|...++..
T Consensus 95 ----------~~~P~------------------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~ 140 (814)
T COG0495 95 ----------GTDPA------------------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQ 140 (814)
T ss_pred ----------CCChH------------------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHH
Confidence 01221 23567788899999999999999755 4577789999
Q ss_pred HHHHHHCCCeEe
Q 010043 283 IDELSKQGLVEE 294 (519)
Q Consensus 283 i~~L~~~g~~~~ 294 (519)
+-+|.++|++|.
T Consensus 141 F~kL~ekGL~y~ 152 (814)
T COG0495 141 FLKLYEKGLAYR 152 (814)
T ss_pred HHHHHHCCCEEe
Confidence 999999999995
No 85
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.04 E-value=3.1e-09 Score=114.92 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=43.8
Q ss_pred CCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec
Q 010043 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (519)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~ 396 (519)
|.||| |+|..++.. ..+.+|+| .+-++..+-+...-+++.+|+. .+... .|+.+ +.+|.+||||+
T Consensus 227 iyPtY---dFa~~vdD~-l~gITHvl--ct~Ef~~r~~~y~wl~~~l~l~------~p~~~--ef~rl-n~~~~~LSKRk 291 (574)
T PTZ00437 227 IYPSY---DFTHCLIDS-LEDIDYSL--CTLEFETRRESYFWLLEELNLW------RPHVW--EFSRL-NVTGSLLSKRK 291 (574)
T ss_pred EEccC---cccceeech-hcCCCEEe--eechhhcccHHHHHHHHHhCCc------ccceE--eeeee-cCCCceeeccc
Confidence 44555 467666665 57889987 6677766655544456888863 12222 34654 46788999999
Q ss_pred CCc
Q 010043 397 SEV 399 (519)
Q Consensus 397 G~~ 399 (519)
+..
T Consensus 292 l~~ 294 (574)
T PTZ00437 292 INV 294 (574)
T ss_pred hHH
Confidence 754
No 86
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.04 E-value=1.5e-09 Score=126.50 Aligned_cols=139 Identities=20% Similarity=0.268 Sum_probs=100.7
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++.+|-..-|||||+|||||+|+.++.|+++|..|..|++|......+..|+++...+.-+...... .+
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~-------~~--- 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL-------TI--- 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh-------cc---
Confidence 56799999999999999999999999999999999999999999999999999998766433111000 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
+.|.... .. ...+|.+. .+| +.+++.+...+++.+++||+.+||..+ ..|...+..
T Consensus 94 -~~~~~~~-~i-~~~~i~~~----------~~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~ 154 (938)
T TIGR00395 94 -KNYTEVH-AI-PREELLKF----------TDP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEW 154 (938)
T ss_pred -ccchhhc-cC-CHHHHHhh----------cCH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHH
Confidence 0010000 00 11111111 111 345777888999999999999998654 344567999
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|.
T Consensus 155 ~f~~L~e~G~iy~ 167 (938)
T TIGR00395 155 QMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHCCCEec
Confidence 9999999999984
No 87
>PLN02563 aminoacyl-tRNA ligase
Probab=98.97 E-value=6.2e-09 Score=120.61 Aligned_cols=116 Identities=21% Similarity=0.182 Sum_probs=88.8
Q ss_pred ceEEEEecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 128 KKAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 128 ~kV~VE~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
++..|--.-|+|+|. |||||+|+.+++|++||..|..||+|......+.+|.++...+.- .+
T Consensus 110 ~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~-----------~g------ 172 (963)
T PLN02563 110 PKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIE-----------TG------ 172 (963)
T ss_pred CCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHH-----------cC------
Confidence 344443344999996 999999999999999999999999999999999999987643210 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
..| + ..+......+++.+++||+.+||..+ ..|...++.
T Consensus 173 ------------~~p---------------------~---~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~ 216 (963)
T PLN02563 173 ------------THP---------------------K---ITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQW 216 (963)
T ss_pred ------------CCh---------------------H---HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHH
Confidence 001 0 12345567788899999999998544 345567999
Q ss_pred HHHHHHHCCCeEeec
Q 010043 282 VIDELSKQGLVEESQ 296 (519)
Q Consensus 282 vi~~L~~~g~~~~~d 296 (519)
++.+|.++|++|+.+
T Consensus 217 ~F~~L~~~GliY~~~ 231 (963)
T PLN02563 217 IFLQLLKRGLAYQAE 231 (963)
T ss_pred HHHHHHHCCCEEeee
Confidence 999999999999754
No 88
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.97 E-value=6.4e-09 Score=121.74 Aligned_cols=133 Identities=20% Similarity=0.181 Sum_probs=100.1
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
++++..+...-|||||.|||||+++.++.|+++|..+..||+|.+....+-+|.++...+.. ..+-. ....+.+
T Consensus 39 ~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek---~l~~~---~~~~i~~ 112 (975)
T PRK06039 39 GGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEK---ELGIS---GKKDIEE 112 (975)
T ss_pred CCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHH---HhCcc---cccchhh
Confidence 34668888999999999999999999999999999999999999999999999998866532 11100 0011111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~ 280 (519)
+ ..++|. +..++++..+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 113 ~------------g~~~f~------------------~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~ 162 (975)
T PRK06039 113 Y------------GIEKFN------------------EKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW 162 (975)
T ss_pred c------------CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHH
Confidence 0 012233 334455677788889999999999998654 23446789
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
.++.+|.++|++|+
T Consensus 163 ~~F~~l~~kGliyr 176 (975)
T PRK06039 163 WALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999995
No 89
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.4e-08 Score=112.37 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=92.4
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++.+.-=..|.-||.+||||+-|-||=|+|.|.....||+|.++...+=+|.+|..-+. ++++- . ...+..
T Consensus 49 ~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~ve---k~lg~-~---k~~i~~-- 119 (933)
T COG0060 49 PKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVE---KKLGI-G---KKDIES-- 119 (933)
T ss_pred CcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHH---HHhCC-C---cchhhh--
Confidence 44555557788999999999999999999999999999999999999999999874432 12121 0 010100
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc--c---cccCcHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE--S---FYNPYIPGV 282 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e--s---~~~~~v~~v 282 (519)
+ .-.+|. +.+++++...++.+++.+.|||+-.||..- + .|...+-.+
T Consensus 120 ---------~-~~~efr------------------~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~ 171 (933)
T COG0060 120 ---------F-GVEEFR------------------EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWA 171 (933)
T ss_pred ---------c-CHHHHH------------------HHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHH
Confidence 0 001333 344556667778889999999998887432 1 233456688
Q ss_pred HHHHHHCCCeEe
Q 010043 283 IDELSKQGLVEE 294 (519)
Q Consensus 283 i~~L~~~g~~~~ 294 (519)
+.+|.++|++|+
T Consensus 172 f~~~~~kGllyr 183 (933)
T COG0060 172 FKELYEKGLLYR 183 (933)
T ss_pred HHHHHHCCCeec
Confidence 999999998884
No 90
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.89 E-value=1.8e-08 Score=119.06 Aligned_cols=157 Identities=18% Similarity=0.087 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCCcc---CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcc
Q 010043 102 SKNWMAKNIQKMLVDGIETWAPK---LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (519)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~---~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G 178 (519)
++......+.+..++...+.... .++++.++.-.-||+||.+||||+++.++.|+++|..+..||+|.+....+.+|
T Consensus 73 ~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hG 152 (1205)
T PTZ00427 73 NIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHG 152 (1205)
T ss_pred CHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCC
Confidence 33444555555444433221111 234568888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHH
Q 010043 179 TQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDK 258 (519)
Q Consensus 179 ~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~ 258 (519)
.++...+.. ..+-. ....+.++ .-++| .+.+++++..+...+++
T Consensus 153 lPiE~~vEk---~lg~~---~k~~i~~~------------g~~~f------------------~e~c~~~~~~~~~~~~~ 196 (1205)
T PTZ00427 153 LPIEYEIEK---ENNIN---KKEDILKM------------GIDVY------------------NEKCRGIVLKYSNEWVK 196 (1205)
T ss_pred cHHHHHHHH---HhCCC---cccchhhc------------CHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 999865421 11100 00111100 00122 23445567778888999
Q ss_pred HHHHcCCceeeecc-----ccccCcHHHHHHHHHHCCCeEe
Q 010043 259 VYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 294 (519)
Q Consensus 259 ~~~~Lgi~fd~~~e-----s~~~~~v~~vi~~L~~~g~~~~ 294 (519)
.+++||+..||..+ ..|...+..++.+|.++|++|+
T Consensus 197 ~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 197 TVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99999988887543 3345679999999999999884
No 91
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.85 E-value=1.4e-08 Score=118.47 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=97.9
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++.++--.-|+++|.|||||++|.++.|+++|..+..||+|......+-+|.++..-+.. .... .+....+
T Consensus 53 ~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek---~~~~----~~~~~~~- 124 (961)
T PRK13804 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEE---KYRA----KGKNKDE- 124 (961)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHH---hhhh----cCCChHh-
Confidence 4568888999999999999999999999999999999999999999999999998754321 1100 0000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
+ ...+|. +..++++..+.+.+++.+.+||+..||..+ ..|...+..
T Consensus 125 ----------~-~~~~f~------------------~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~ 175 (961)
T PRK13804 125 ----------V-PVAEFR------------------KECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAR 175 (961)
T ss_pred ----------C-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHH
Confidence 0 001222 334455677788899999999999998644 334567899
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|.
T Consensus 176 ~F~~l~~kGliyr 188 (961)
T PRK13804 176 EFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999995
No 92
>PLN02882 aminoacyl-tRNA ligase
Probab=98.85 E-value=2.9e-08 Score=117.35 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=99.2
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++.++.-.-||+||++||||+++.++.|+++|..+..||+|.+....+.+|.++...+.. ..+- ...+.|.++
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek---~lgi---~~~~~i~~~ 110 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDK---KLGI---KRRDDVLKM 110 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHH---HcCC---CCccchhhc
Confidence 4568888999999999999999999999999999999999999999999999998765421 1110 000111100
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
.-.+| .+..++++..+.+.+++.+++||+.+||..+ ..|...+..
T Consensus 111 ------------g~~~f------------------~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 111 ------------GIDKY------------------NEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred ------------CHHHH------------------HHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 00122 2344566788888999999999998887533 334567999
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|+
T Consensus 161 ~f~~l~~kGliyr 173 (1159)
T PLN02882 161 VFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999985
No 93
>PLN02959 aminoacyl-tRNA ligase
Probab=98.71 E-value=8e-08 Score=113.31 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=104.7
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH---hhCCCCCccc--cc
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDAN--ET 201 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~---~~~~~~~~~~--~~ 201 (519)
..+.+|.+.-|++||+|||||++|.++.|+++|..|..||+|......+-.|.++...+.-+. +.++.....+ +.
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 367899999999999999999999999999999999999999999999999999988775442 1222110000 00
Q ss_pred cHHHHHHH--HHHHhcccCCChHHHHHHHHHHHHHcc-----------CCh-HHHHHH---HHHHHHHHHHHHHHHHHcC
Q 010043 202 AIGELQEF--YRRSKNRFDSDPAFKERAQQAVVRLQS-----------GEP-KYHEAW---AQICEISRKEFDKVYKRLR 264 (519)
Q Consensus 202 ~i~~l~~~--y~~~~~~~~~~~~~~~~~~~~~~~~e~-----------gd~-~~~~~w---~~~~~~~~~~~~~~~~~Lg 264 (519)
........ -....+. ....+|.+.+++...+... |-| +.+..+ ...++.+-..+++++.+||
T Consensus 124 ~~~~~~~~~~~~~~~~~-~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 124 DEAAAVAAAKAEAEAAA-APPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccc-ccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 00000000 0000000 0112455555544332110 111 111111 1124445577889999999
Q ss_pred Cceeeecc-------ccccCcHHHHHHHHHHCCCeEe
Q 010043 265 VDLEEKGE-------SFYNPYIPGVIDELSKQGLVEE 294 (519)
Q Consensus 265 i~fd~~~e-------s~~~~~v~~vi~~L~~~g~~~~ 294 (519)
+..||..+ ..|...+...+.+|.++|++|.
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~ 239 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe
Confidence 99998643 2345568999999999999985
No 94
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=4.7e-08 Score=105.35 Aligned_cols=114 Identities=21% Similarity=0.316 Sum_probs=86.8
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.++|+++ --=|.|.|.|||||.|-.+|.|++||+.|.+||+|..-...+-+|.+-..-+.
T Consensus 56 sk~KYiL-sMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAi------------------- 115 (876)
T KOG0435|consen 56 SKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAI------------------- 115 (876)
T ss_pred CCCceEE-EecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHH-------------------
Confidence 3455666 34489999999999999999999999999999999999998888875432210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSG-EPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYI 279 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~g-d~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v 279 (519)
|.| +| +.| ...-++.+++.+.+||+.|||..| ..|-...
T Consensus 116 -----------------------------ergv~P---~sW---T~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWT 160 (876)
T KOG0435|consen 116 -----------------------------ERGVHP---ASW---TINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWT 160 (876)
T ss_pred -----------------------------hcCCCc---hhh---hHHHHHHHHHHHHHcCcccccccccccCCcchhHHH
Confidence 011 11 233 233456788899999999999766 3455678
Q ss_pred HHHHHHHHHCCCeEe
Q 010043 280 PGVIDELSKQGLVEE 294 (519)
Q Consensus 280 ~~vi~~L~~~g~~~~ 294 (519)
+-++-+|-++|++|.
T Consensus 161 QwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 161 QWIFLKLFEKGLAYQ 175 (876)
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999999999996
No 95
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.47 E-value=5.6e-07 Score=105.59 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=68.3
Q ss_pred cCCCeEEEEecCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~-hf~~~~~i~-~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a 413 (519)
|.+| +++.|.||.. .|..+..+. ..+|.. |+..-+ ..|+|++.+|+|||||+||+|++.|++++
T Consensus 544 ~Pad--~~~~G~Di~r~Wf~~l~~~~~~~~~~~----pfk~v~---~hG~Vld~~G~KMSKSlGNvIdP~dli~~----- 609 (975)
T PRK06039 544 FPAD--FIVEGIDQTRGWFYTLLALSTALFDRP----PYKNVL---VHGHVLDEDGQKMSKSLGNYVDPFEVFDK----- 609 (975)
T ss_pred CCce--EEEechhhHhhHHHHHHHHHHHhcCCC----cccEEE---EeeeEECCCCCCcCCCCCCcCCHHHHHHH-----
Confidence 4555 5679999864 344443222 233443 333333 34889988999999999999999999998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhc
Q 010043 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN 465 (519)
Q Consensus 414 ~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd~~~~~~ 465 (519)
+|.+|+||++++..+ .++++|+++.+..
T Consensus 610 ------------------------yGaDalR~~lls~~~~~~D~~fs~~~~~~ 638 (975)
T PRK06039 610 ------------------------YGADALRWYLLSSSAPWEDLRFSEDGVRE 638 (975)
T ss_pred ------------------------hChHHHHHHHHhCCCCCCCceechhHHHH
Confidence 699999999999885 9999999999443
No 96
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.45 E-value=5.8e-07 Score=105.11 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=71.5
Q ss_pred cCCCeEEEEecCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~-hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a 413 (519)
|.+| +++.|.||.. -|+..+.... ..|.. |...-+.| |+|++.+|+|||||+||+|.+.+++++
T Consensus 582 ~PaD--~~~eG~Di~rgWF~s~ll~s~~~~~~~----P~k~V~~H---G~vld~~G~KMSKSlGNvIdP~~ii~~----- 647 (961)
T PRK13804 582 WPAD--LYLEGSDQHRGWFNSSLLESCGTRGRA----PYKAVLTH---GFTLDEKGEKMSKSLGNTVSPQDVIKQ----- 647 (961)
T ss_pred CCce--EEEEEcccccHHHHHHHHHHHHhcCCC----ChhhEEEe---ccEECCCCCCccCCCCCcCCHHHHHHh-----
Confidence 5666 6789999964 5665433332 22443 33445666 789988999999999999999999987
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010043 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (519)
Q Consensus 414 ~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~ 465 (519)
+|.+++||+.++..+.++++|+++.+..
T Consensus 648 ------------------------yGaD~lRl~lls~~~~~D~~fs~~~l~~ 675 (961)
T PRK13804 648 ------------------------SGADILRLWVASVDYSDDQRIGKEILKQ 675 (961)
T ss_pred ------------------------cCHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 6999999999999999999999987644
No 97
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.36 E-value=7e-07 Score=103.88 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=86.9
Q ss_pred CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChH
Q 010043 143 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPA 222 (519)
Q Consensus 143 lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~ 222 (519)
|||||+|+.++.|+++|..|..||+|.+....+-.|.++...+..+.. ++.+.. +.++.. +.-.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--------~~~~~~---~~~~~~---~gi~~- 65 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--------GDPETI---ELYKSL---YGIPE- 65 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--------cchhHH---HHHHHH---cCCCH-
Confidence 799999999999999999999999999999999999999866533211 011111 111110 01100
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHHHHHHHHCCCeEe
Q 010043 223 FKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 294 (519)
Q Consensus 223 ~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~vi~~L~~~g~~~~ 294 (519)
+.+.++ +++ +++++.+...+++.+++||+.+||..+ ..|...+..++.+|.++|++|.
T Consensus 66 ------~~i~~f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 66 ------EELEKF--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred ------HHHHHh--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 111111 122 356788899999999999999998654 3455679999999999999884
No 98
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=4.2e-06 Score=93.07 Aligned_cols=135 Identities=20% Similarity=0.296 Sum_probs=94.7
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+...+|-..-||+||.|||||+-...|-|+|+|..|..||+|...=..+-+|--...+++-...+... ..-+
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~---~~Rh---- 145 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGG---KTRH---- 145 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcC---cchh----
Confidence 456677779999999999999999999999999999999999999999988886544333211111000 0000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccccc-----CcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYN-----PYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~~~-----~~v~ 280 (519)
+..|+.|.+ +.| +..+..-..+.+.+++||-.+||..|-+-. ..+.
T Consensus 146 -------------------~lgRe~F~~---------~vw-~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~ 196 (995)
T KOG0432|consen 146 -------------------DLGREEFLK---------EVW-EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVT 196 (995)
T ss_pred -------------------hcCHHHHHH---------HHH-HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHH
Confidence 011122211 223 234556677888999999999997765442 3688
Q ss_pred HHHHHHHHCCCeEeec
Q 010043 281 GVIDELSKQGLVEESQ 296 (519)
Q Consensus 281 ~vi~~L~~~g~~~~~d 296 (519)
+.+-+|.+.|++|...
T Consensus 197 eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 197 EAFVRLHEEGLIYRAN 212 (995)
T ss_pred HHHHHHHhcCceEecC
Confidence 9999999999999643
No 99
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=98.28 E-value=1.9e-06 Score=100.76 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=67.9
Q ss_pred cCCCeEEEEecCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~-hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~ 414 (519)
|.+| +++.|.||.. |.--. .+...+.+.. .+++..+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 572 yP~D--~~~~GkDii~~H~~~~-i~~~~a~~~~--~~~Pk~i~~~--G~vl~-~G~KMSKSlGNvI~p~d~i~~------ 637 (938)
T TIGR00395 572 YPLD--WRISGKDLIPNHLTFY-IFHHVAIFPE--KFWPRGIVVN--GYVML-EGKKMSKSKGNVLTLEQAVEK------ 637 (938)
T ss_pred CCce--EEEEeeccccchHHHH-HHHHHHcCCc--cccCcEEEEe--ceEEe-CCccccCcCCCCCCHHHHHHH------
Confidence 4566 7789999854 32221 1112222211 1233567776 66875 799999999999999999987
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhcc
Q 010043 415 AVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND 466 (519)
Q Consensus 415 ~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~-~~~~~~~Fd~~~~~~~ 466 (519)
.|.+++||++++. .+.++++|+++.+.+.
T Consensus 638 -----------------------yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~ 667 (938)
T TIGR00395 638 -----------------------FGADVARLYIADAAETVQDADWKESEVEGT 667 (938)
T ss_pred -----------------------cChHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6999999999986 6799999999987654
No 100
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.23 E-value=2.3e-06 Score=101.45 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=70.5
Q ss_pred cCCCeEEEEecCCcc-ccHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQ-LHFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~-~hf~~~~~i~-~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a 413 (519)
+.+| +++.|.||. .+|..+..+. ..+|-. |+..-+.| |+|++++|+|||||+||+|...+++++
T Consensus 672 fPaD--~i~eG~Dq~rgWf~s~l~~s~~l~~~~----PfK~VlvH---G~Vld~dG~KMSKSlGNvIDP~evI~k----- 737 (1205)
T PTZ00427 672 FPAD--FIAEGLDQTRGWFYTLLVISTLLFDKA----PFKNLICN---GLVLASDGKKMSKRLKNYPDPLYILDK----- 737 (1205)
T ss_pred CCce--EEEEecchhccHHHHHHHHHHHhcCCC----CcceeEEc---cEEEcCCCCCcccCCCCCCCHHHHHHh-----
Confidence 4566 557999985 4788765444 344553 45555565 889988999999999999999999987
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC--CCCccccHHHHh
Q 010043 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR--LTNYTFSFDQML 464 (519)
Q Consensus 414 ~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~--~~~~~Fd~~~~~ 464 (519)
+|.||+||++++... ..++.|+++.+.
T Consensus 738 ------------------------YGADaLR~~Lls~~~~~~~Dl~Fse~~v~ 766 (1205)
T PTZ00427 738 ------------------------YGADSLRLYLINSVAVRAENLKFQEKGVN 766 (1205)
T ss_pred ------------------------cCCcHHHHHHHhcCCCCCcccccCHHHHH
Confidence 699999999997643 578899988763
No 101
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.22 E-value=5e-06 Score=96.86 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=71.9
Q ss_pred cCCCeEEEEecCCccc-cHHH-HHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQL-HFDM-VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~-hf~~-~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a 413 (519)
+.+| +++.|.||.. |.-- ++.....++.. ++...+.+. |+|+. +|+|||||+||+|++.|++++
T Consensus 529 ~P~D--~~~~GkDii~~Hl~~~~~~~~a~~~~~----~~Pk~v~~h--G~vl~-~G~KMSKS~GNvVdp~eii~~----- 594 (897)
T PRK12300 529 YPVD--WRHSGKDLIPNHLTFFIFNHVAIFPEE----KWPRGIVVN--GFVLL-EGKKMSKSKGNVIPLRKAIEE----- 594 (897)
T ss_pred CCce--EEEeeeccCccHHHHHHHHHHHhcCCC----ccCcEEEEc--ceEEE-CCccccCcCCCCCCHHHHHHH-----
Confidence 4556 6689999853 2111 11111122321 333355555 77886 799999999999999999987
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHh
Q 010043 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKS 488 (519)
Q Consensus 414 ~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~silrka 488 (519)
+|.|++||++++ .....+.+|+++.+.... --..|+.++.++.
T Consensus 595 ------------------------yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~--------~~l~r~~~~~~~~ 638 (897)
T PRK12300 595 ------------------------YGADVVRLYLTSSAELLQDADWREKEVESVR--------RQLERFYELAKEL 638 (897)
T ss_pred ------------------------cChHHHHHHHHhCCCCCCCCccCHHHHHHHH--------HHHHHHHHHHHHH
Confidence 699999999997 467899999999874431 1124666665554
No 102
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.18 E-value=2.9e-06 Score=98.02 Aligned_cols=96 Identities=14% Similarity=0.273 Sum_probs=69.8
Q ss_pred cCCCeEEEEecCCc-ccc--H-HHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc----CCCc-----------------
Q 010043 336 EKAEWIIYVTDVGQ-QLH--F-DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG----EDGK----------------- 390 (519)
Q Consensus 336 ~~~d~~I~V~g~~q-~~h--f-~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~----~~g~----------------- 390 (519)
+.+| +|+.|.|| ..| + .-...++...|..+...|...-+.| |||++ ++|+
T Consensus 519 ~PvD--~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~---G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~ 593 (842)
T TIGR00396 519 LPVD--LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQ---GMVLGFYYPPNGKSPPDELTERDEKAKDKS 593 (842)
T ss_pred CCCc--EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhcc---ceEEeeeecCCCCccChhhhcccccccccc
Confidence 3566 67899998 344 2 2233455555654322233334444 88998 7888
Q ss_pred ----------ceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCcccc
Q 010043 391 ----------RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFS 459 (519)
Q Consensus 391 ----------kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd 459 (519)
|||||+||+|++.|++++ .|.+++||++++ ..+..+++|+
T Consensus 594 ~~~~~~~~~~KMSKS~GN~v~p~~ii~~-----------------------------ygaDalRl~~l~~~~~~~d~~~~ 644 (842)
T TIGR00396 594 GGELVVVGYEKMSKSKGNGIDPQEIVKK-----------------------------HGADALRLYIMFMGPIAASLEWN 644 (842)
T ss_pred CCcccccchhhhhhcCCCcCCHHHHHHH-----------------------------cCchHHHHHHHhcCCcCCCCccC
Confidence 999999999999999998 699999999995 5688999999
Q ss_pred HHHHhc
Q 010043 460 FDQMLN 465 (519)
Q Consensus 460 ~~~~~~ 465 (519)
.+.+..
T Consensus 645 ~~~l~~ 650 (842)
T TIGR00396 645 DSGLEG 650 (842)
T ss_pred HHHHHH
Confidence 887743
No 103
>PLN02882 aminoacyl-tRNA ligase
Probab=98.15 E-value=4.6e-06 Score=99.08 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=68.3
Q ss_pred cCCCeEEEEecCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~-hf~~~~~i~-~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a 413 (519)
|.+| +++.|.||.. .|..+..+. ..+|.. ++ ..+.++ |+|+.++|+|||||+||+|...+++++
T Consensus 566 ~PaD--~i~eG~Dq~RgWf~~ll~~s~~l~~~~----pf-k~Vivh--G~vlde~G~KMSKSlGNvIdP~evi~~----- 631 (1159)
T PLN02882 566 FPAD--FVAEGLDQTRGWFYTLMVLSTALFDKP----AF-KNLICN--GLVLAEDGKKMSKSLKNYPDPNEVIDK----- 631 (1159)
T ss_pred CCce--EEEEecchhhhHHHHHHHHHHHhcCCC----Cc-ceeEEc--cEEECCCCCCcccCCCCCCCHHHHHHH-----
Confidence 5666 5569999865 555443333 344664 33 344443 789988999999999999999999987
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC--CCCccccHHHHhc
Q 010043 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR--LTNYTFSFDQMLN 465 (519)
Q Consensus 414 ~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~--~~~~~Fd~~~~~~ 465 (519)
+|.||+||++++... ..++.|+++.+.+
T Consensus 632 ------------------------YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~ 661 (1159)
T PLN02882 632 ------------------------YGADALRLYLINSPVVRAEPLRFKEEGVFG 661 (1159)
T ss_pred ------------------------hCcHHHHHHHHhCCcccCcCcccCHHHHHH
Confidence 699999999997654 5778999888654
No 104
>PLN02381 valyl-tRNA synthetase
Probab=97.94 E-value=1.4e-05 Score=94.43 Aligned_cols=116 Identities=9% Similarity=0.125 Sum_probs=71.0
Q ss_pred cCCCeEEEEecCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH-HH
Q 010043 336 EKAEWIIYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK-NR 412 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~-~hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~-~~ 412 (519)
+..| +++.|.||. .-|.++....- ..|-. |+..-+.| |||++.+|+|||||+||+|...|+++..- +.
T Consensus 607 ~P~d--~~~~G~Dii~~W~~rmi~~~~~~~~~~----PFk~v~~h---G~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~ 677 (1066)
T PLN02381 607 YPTS--VLETGHDILFFWVARMVMMGMQLGGDV----PFRKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 677 (1066)
T ss_pred CCCe--eeeecchhhhhHHHHHHHHHHHhCCCC----chHHheec---ceEECCCCCCCCCCCCCCCCHHHHHhhcchhh
Confidence 3445 557888874 34455543322 33332 45556666 89999999999999999999999998531 11
Q ss_pred HHHHHHHhcCCCCCCHHHHHHH-----------HHHhhhhHHHHHhhcCC-CCCCccccHHHHh
Q 010043 413 SKAVLIERGKDKEWTEEELEQT-----------AEAVGYGAAKYFDLKNN-RLTNYTFSFDQML 464 (519)
Q Consensus 413 a~~~i~~~~~~~~~~~~e~~~~-----------a~~vg~~avry~~L~~~-~~~~~~Fd~~~~~ 464 (519)
....+.. -.+++.|+... ..+.|.||+||++++.. ...++.||++.+.
T Consensus 678 l~~~~~~----~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~ 737 (1066)
T PLN02381 678 LHKRLEE----GNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVV 737 (1066)
T ss_pred HHHhhhc----cccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHH
Confidence 1111110 01111111111 12479999999999766 4668889887653
No 105
>PLN02959 aminoacyl-tRNA ligase
Probab=97.90 E-value=3.7e-05 Score=91.07 Aligned_cols=90 Identities=9% Similarity=0.080 Sum_probs=63.7
Q ss_pred cCCCeEEEEecCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~-~hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a 413 (519)
+.+| +++.|.||. .||........ ..|-. ++...+... |+|+ .+|+|||||+||+|++.|+++.
T Consensus 670 yP~D--l~~sG~Dii~~wl~~~l~~~~al~~~~----P~p~~v~v~--G~V~-~~G~KMSKSkGNvI~p~diI~k----- 735 (1084)
T PLN02959 670 YPFD--LRVSGKDLIQNHLTFAIYNHTAIWAEE----HWPRGFRCN--GHLM-LNSEKMSKSTGNFLTLRQAIEE----- 735 (1084)
T ss_pred CCCe--EEEecccHHHHHHHHHHHHHHHhcCCC----CCCceEEEc--cEEe-cCCcCccccCCCcCCHHHHHHH-----
Confidence 4555 667999984 36653322112 23332 343334444 6787 6899999999999999999987
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHH
Q 010043 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQM 463 (519)
Q Consensus 414 ~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~ 463 (519)
+|.|++||++++.. ...+.+|+++.+
T Consensus 736 ------------------------yGADalRl~la~~~~~~~D~nF~~k~~ 762 (1084)
T PLN02959 736 ------------------------FSADATRFALADAGDGVDDANFVFETA 762 (1084)
T ss_pred ------------------------hCchHHHHHHhhcCCccCCCCccHHHH
Confidence 69999999999874 467899998754
No 106
>PLN02563 aminoacyl-tRNA ligase
Probab=97.88 E-value=1.3e-05 Score=93.37 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=65.4
Q ss_pred cCCCeEEEEecCCcc-cc---HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc---------CCCc------------
Q 010043 336 EKAEWIIYVTDVGQQ-LH---FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGK------------ 390 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~-~h---f~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~---------~~g~------------ 390 (519)
+.+| +||.|.||. .| ..-.++.+..+|+.....|...-+.| |||++ ++|+
T Consensus 615 ~PvD--~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~q---GmVl~~~~~~~~~d~~G~~~~~~~~~~~~~ 689 (963)
T PLN02563 615 MPVD--LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQ---GMILGEVEYTAFKDSDGEYVSADTADRLGE 689 (963)
T ss_pred CCCc--EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhcc---ceeecCccccceecCCCcCccccccccccc
Confidence 3556 678999984 33 44455666666654321233333333 88987 5666
Q ss_pred ---------------------------------ceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010043 391 ---------------------------------RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA 437 (519)
Q Consensus 391 ---------------------------------kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~ 437 (519)
|||||+||+|.+.+++++
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~k----------------------------- 740 (963)
T PLN02563 690 LQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSE----------------------------- 740 (963)
T ss_pred ccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHH-----------------------------
Confidence 999999999999999998
Q ss_pred hhhhHHHHHhhcCCC-CCCccccHHHH
Q 010043 438 VGYGAAKYFDLKNNR-LTNYTFSFDQM 463 (519)
Q Consensus 438 vg~~avry~~L~~~~-~~~~~Fd~~~~ 463 (519)
+|.|++||+.+...+ ..+..|+.+.+
T Consensus 741 YGADaLRl~ll~~ap~~dd~~w~~~~V 767 (963)
T PLN02563 741 YGADSLRLYEMFMGPLRDSKTWSTSGV 767 (963)
T ss_pred cCcHHHHHHHHhCCCcccccccCHHHH
Confidence 699999999987665 55566775554
No 107
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.81 E-value=2.2e-05 Score=92.73 Aligned_cols=116 Identities=12% Similarity=0.161 Sum_probs=67.8
Q ss_pred cCCCeEEEEecCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH-HH
Q 010043 336 EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK-NR 412 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~-hf~~~~~i~-~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~-~~ 412 (519)
+..| +++.|.|+.. -|.++.... ...|-. |+..-+.| |+|++.+|+|||||+||+|...|+++... +.
T Consensus 537 ~P~d--~~~~G~Dii~~W~arm~~~~~~~~~~~----Pfk~v~~H---G~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~ 607 (995)
T PTZ00419 537 FPTS--LLETGSDILFFWVARMVMMSLHLTDKL----PFKTVFLH---AMVRDSQGEKMSKSKGNVIDPLEVIEGISLQD 607 (995)
T ss_pred CCCc--EEEechhHHhHHHHHHHHHHHHhcCCC----ChHHHhcc---ceEECCCCCCcccCCCCcCChHHHhcccchhh
Confidence 4555 6789988743 223332221 122322 33344555 78999899999999999999999988321 00
Q ss_pred HHHHHHHhcCCCCCCHHHHHH-----------HHHHhhhhHHHHHhhcCC-CCCCccccHHHHh
Q 010043 413 SKAVLIERGKDKEWTEEELEQ-----------TAEAVGYGAAKYFDLKNN-RLTNYTFSFDQML 464 (519)
Q Consensus 413 a~~~i~~~~~~~~~~~~e~~~-----------~a~~vg~~avry~~L~~~-~~~~~~Fd~~~~~ 464 (519)
+...+.+ ..+++.|+.. --.+.|.||+||++++.. ...++.||.+.+.
T Consensus 608 l~~~~~~----~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~ 667 (995)
T PTZ00419 608 LNQKLYE----GNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVV 667 (995)
T ss_pred HHHhhhc----cccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHH
Confidence 1000000 0111111111 011479999999999755 4678999987764
No 108
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=2.6e-05 Score=88.51 Aligned_cols=92 Identities=17% Similarity=0.303 Sum_probs=63.6
Q ss_pred CCCeEEEEecCCcc---ccHHH-HHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHH
Q 010043 337 KAEWIIYVTDVGQQ---LHFDM-VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR 412 (519)
Q Consensus 337 ~~d~~I~V~g~~q~---~hf~~-~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~ 412 (519)
..| +||-|.||. +-|.+ ..+++.-.|+-|...|. .++. .-|||++.+|+|||||+||+|+++|++++
T Consensus 526 PVD--~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf-~~L~--~qGmVl~~~g~KMSKSKgN~v~p~~~i~~---- 596 (814)
T COG0495 526 PVD--LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPF-KKLI--TQGMVLGEEGEKMSKSKGNVVDPEEAVEK---- 596 (814)
T ss_pred Chh--eeecchhHHHHHHHHHHHHHHHhcccCcCCCccch-hhhh--ccceEEecCCCccccccCCCCCHHHHHHH----
Confidence 555 688999983 32333 34556666765421121 2343 33899987889999999999999999998
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHH
Q 010043 413 SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQ 462 (519)
Q Consensus 413 a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd~~~ 462 (519)
.|.|++|.|.+...+ .++++|+-+.
T Consensus 597 -------------------------yGADt~Rl~~m~~ap~~~d~~W~e~g 622 (814)
T COG0495 597 -------------------------YGADTVRLYIMFAAPPEQDLEWSESG 622 (814)
T ss_pred -------------------------hCchHHHHHHHhhCChhhCCCCChhh
Confidence 689999998888766 5565555443
No 109
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.61 E-value=0.00012 Score=84.67 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=64.2
Q ss_pred cCCCeEEEEecCCcc-ccHH--H-HHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQ-LHFD--M-VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN 411 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~-~hf~--~-~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~ 411 (519)
+.+| +|+.|.||. .|+- + ...++..+|+.+...|. ..+.|. ||| |||||+||+|++.|++++
T Consensus 522 ~P~D--ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pf-k~v~~~--G~v------KMSKS~GN~i~p~~~i~~--- 587 (805)
T PRK00390 522 LPVD--QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPF-KKLLTQ--GMV------KMSKSKGNVVDPDDIIEK--- 587 (805)
T ss_pred CCCc--EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hhheec--CcE------EeCCCCCCCCCHHHHHHH---
Confidence 3566 678999984 3332 2 22444555543221233 356666 667 899999999999999997
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhc
Q 010043 412 RSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN 465 (519)
Q Consensus 412 ~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~ 465 (519)
.|.+++||++++ .++.++++|+.+.+..
T Consensus 588 --------------------------ygaD~lRl~l~~~~~~~~d~~~s~~~l~~ 616 (805)
T PRK00390 588 --------------------------YGADTARLFEMFAGPPEKDLEWSDSGVEG 616 (805)
T ss_pred --------------------------cChHHHHHHHHhcCCccCCcccCHHHHHH
Confidence 699999999987 5789999999987653
No 110
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00049 Score=71.28 Aligned_cols=116 Identities=18% Similarity=0.358 Sum_probs=89.6
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHH-HHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~-iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (519)
.+.++++|--+-|-++...|.|+.=.. .-+|+.||..+..|++..+....+.+|+....-+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka------------------ 72 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA------------------ 72 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH------------------
Confidence 456789999999999999999998644 5579999999999999999999999988543211
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccc---ccCcH
Q 010043 204 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSG-EPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF---YNPYI 279 (519)
Q Consensus 204 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~g-d~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~---~~~~v 279 (519)
+|+| .| +++++....-++..|+-++|.||+++..- ..+..
T Consensus 73 ------------------------------leeg~tP------~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~ 116 (567)
T KOG1247|consen 73 ------------------------------LEEGLTP------QELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEIC 116 (567)
T ss_pred ------------------------------HHccCCH------HHHHHhcchhHHHHHHhhcccccccCcccCcchhHHH
Confidence 1111 11 34667777778889999999999887532 24578
Q ss_pred HHHHHHHHHCCCeEe
Q 010043 280 PGVIDELSKQGLVEE 294 (519)
Q Consensus 280 ~~vi~~L~~~g~~~~ 294 (519)
+.++.+|.++|++-+
T Consensus 117 Q~iF~kl~~ng~~se 131 (567)
T KOG1247|consen 117 QDIFSKLYDNGYLSE 131 (567)
T ss_pred HHHhhchhhcCCccc
Confidence 999999999998765
No 111
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.37 E-value=0.0013 Score=68.11 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=45.3
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCC-CCCCCcEEEEEe-EEEEcCCCcceeeecCC-cccHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSAD-DSTYPKASHVGF-GLVLGEDGKRLRTRFSE-VVRLVDLLDE 408 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~-~~~~~~~~Hv~~-g~V~~~~g~kmSkR~G~-~v~l~dll~e 408 (519)
.+++|.+. +|.||..|+.--..++..+|..-+. .. .|...|..+ -.|.+.+|+|||||.++ .|.|.|=-++
T Consensus 137 ~~~~d~vp--vG~DQ~~h~elaRdia~r~n~~~~~~f~-~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~ 210 (328)
T TIGR00233 137 LYQADLVP--VGIDQDQHLELTRDLAERFNKKFKNFFP-KPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQ 210 (328)
T ss_pred hcCCCeee--cccccHHHHHHHHHHHHHhhhhcCcccC-CChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHH
Confidence 35677665 9999999999988999988820000 01 123334322 12445567899999996 8888763333
No 112
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=97.35 E-value=0.00012 Score=63.94 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhcC-CCCCCHHhHHHHhhccc
Q 010043 474 LLYAHARICSIIRKSGKDIEELKKVG-LVFEVEALTMFQRLSFS 516 (519)
Q Consensus 474 iqYa~aR~~silrka~~~~~~~~~~~-~~l~~~~e~~l~~~~~~ 516 (519)
|||||||++||+||++.........+ ..+.+++|+.|++....
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~ 44 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLAR 44 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHH
Confidence 79999999999999987543322222 22689999999876543
No 113
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.34 E-value=0.00068 Score=72.30 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=44.6
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
++++.. ++|.||..|+..-..+++.+|..+ ..++..-++.+.+|+|||||.|+.|.|+|
T Consensus 187 ~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~--------~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 187 YGCDLQ--LGGSDQWGNILSGRDLQRRYGGKP--------QFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCCCEE--eccHHHHHHHHHHHHHHHHhCCCC--------eEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 466644 489999999998888888887631 12222335677889999999999999987
No 114
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.21 E-value=0.0013 Score=68.36 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=47.6
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc--ceeeec-CCcccHHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRF-SEVVRLVDLLDEAK 410 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~--kmSkR~-G~~v~l~dll~e~~ 410 (519)
+++|.++ +|.||..|+.--..+++.+|+. .+...|. -+|.+-+|. |||||. |+.|.|.|=-++..
T Consensus 167 ~~ad~vp--vG~DQ~~h~~l~Rdia~~~n~~------~p~~l~~--~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~ 234 (329)
T PRK08560 167 LDVDIAV--GGMDQRKIHMLAREVLPKLGYK------KPVCIHT--PLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIR 234 (329)
T ss_pred hCCCEEE--echhHHHHHHHHHHhhHhcCCC------CceEEEc--CccCCCCCCCCCCcCCCCCCeecccCCHHHHH
Confidence 5778665 9999999999888888888874 2333343 346666665 999999 99999876544443
No 115
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.19 E-value=0.0011 Score=70.59 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=45.1
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dl 405 (519)
++++ +=+.|.||..|+..-..+++.+|... +...+. -++.+.+|.|||||.||.|.|+|=
T Consensus 185 ~~~~--iq~gG~DQ~~ni~~grdl~~r~~~~~------~~~lt~--PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVD--LQIGGTDQWGNILMGRDLQRKLEGEE------QFGLTM--PLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCC--EEEecHHHHHHHHHHHHHHHHhCCCC------ceEecc--CCccCCCCCccCCCCCCceeccCC
Confidence 4666 44599999999999989999888731 222223 357788899999999999988664
No 116
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0026 Score=68.02 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=25.4
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLAR 159 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lar 159 (519)
++|++-| .|-|.|.|||||++.|.+-...|.
T Consensus 199 GkVv~RF-PPEpSGyLHIGHAKAALLNqYfa~ 229 (712)
T KOG1147|consen 199 GKVVTRF-PPEPSGYLHIGHAKAALLNQYFAQ 229 (712)
T ss_pred CceEEec-CCCCCceeehhhHHHHHHHHHHHH
Confidence 4787755 589999999999999988776664
No 117
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.16 E-value=0.0061 Score=61.83 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=43.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCC-CCCCCCcEEEEEeEEEEcCCC--cceeeecC-CcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA-DDSTYPKASHVGFGLVLGEDG--KRLRTRFS-EVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~-~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G-~~v~l~d 404 (519)
++++.+. +|.||..|+.-...+++.++..-+ ..+ .|...|....+|.+-+| +|||||.| +.|.|.|
T Consensus 136 ~~~~~vp--vG~DQ~~h~~l~Rdia~r~n~~~~~~~~-~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLVP--VGIDQDPHLELTRDIARRFNKLYGEIFP-KPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEEe--eccccHHHHHHHHHHHHHhccccccccC-CCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 4556554 799999999999999999882100 001 23444431223544444 59999999 9999876
No 118
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0011 Score=74.29 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHH----h-------
Q 010043 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN-RSKAVLIERGKDKEWTEEELEQTAEA----V------- 438 (519)
Q Consensus 371 ~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~-~a~~~i~~~~~~~~~~~~e~~~~a~~----v------- 438 (519)
|+..-+.| +||++..|+||||+.||+|..-|+|+-+.- ...+.+.. -.+++.|++..... +
T Consensus 576 PF~~V~LH---~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~----gNLdp~Ev~~a~~gq~kdFPnGIpeC 648 (995)
T KOG0432|consen 576 PFKEVLLH---GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLS----GNLDPREVEKAKKGQKKDFPNGIPEC 648 (995)
T ss_pred Cchheeec---hhhccccccccchhhccccCHHHHhccccHHHHHHHHHc----CCCCHHHHHHHHHHHHhhcCCCCccc
Confidence 45555666 789999999999999999999999986532 22222221 23455555443332 2
Q ss_pred hhhHHHHHhhcCCC-CCCccccHHHHh
Q 010043 439 GYGAAKYFDLKNNR-LTNYTFSFDQML 464 (519)
Q Consensus 439 g~~avry~~L~~~~-~~~~~Fd~~~~~ 464 (519)
|.||+||.+++.-. ..++.+|...+.
T Consensus 649 GtDALRFaL~s~~~~~~dInLDv~rv~ 675 (995)
T KOG0432|consen 649 GTDALRFALCSYTTQGRDINLDVLRVE 675 (995)
T ss_pred chHHHHHHHHHccccCccccccHHHHh
Confidence 89999999988654 678999987653
No 119
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.05 E-value=0.0046 Score=65.32 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=43.3
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-cceeeecCC-cccHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFSE-VVRLVD 404 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~G~-~v~l~d 404 (519)
.+++|.+. +|.||..|+.-...++..+|+.+ .+.+.|.+ +|.+- +| +|||||.++ .|.|.|
T Consensus 208 ~l~adivp--vG~DQ~~~~~LaRdia~~~~~~~-----~~~~~~~~--~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 208 YLKADICQ--LGMDQRKVNMLAREYCDKKKIKK-----KPIILSHH--MLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred ccCCCEEE--eCccHHHHHHHHHHHHHHhCCCC-----Cceeeccc--ccccCCCCCCCCCcCCCCCeecCCC
Confidence 35778665 99999999988788888999632 22334543 45444 45 699999987 588776
No 120
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.00 E-value=0.007 Score=63.66 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=44.0
Q ss_pred EEEecCCccccHHHHHHHHHHc----CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec-CCcccHHHHHHHH
Q 010043 342 IYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDLLDEA 409 (519)
Q Consensus 342 I~V~g~~q~~hf~~~~~i~~~l----g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~-G~~v~l~dll~e~ 409 (519)
+-.+|.||..|+.--..++..+ |+. .|...|.. ++.+-+|+|||||. ++.|.|.|=-+++
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~------~P~~l~~~--~lpgL~G~KMSkS~~~s~I~L~D~p~~I 270 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGFI------KPSSTYHK--FMPGLTGGKMSSSKPESAIYLTDDPETV 270 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCCC------CchhHhhh--cccCCCCCcCCCCCCCCeeeccCCHHHH
Confidence 4459999999999988899888 874 23334443 46666788999998 6789887644443
No 121
>PLN02486 aminoacyl-tRNA ligase
Probab=96.96 E-value=0.0084 Score=63.30 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=40.4
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCC-cccHHHHHHH
Q 010043 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (519)
Q Consensus 344 V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~e 408 (519)
=+|.||..|+.-...++..+|+. .+.+.|..+ +-+-+| .|||||.+| .|.|.|=-++
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~~------kp~~~~~~~--lp~L~g~~~KMSkS~~nsaI~L~D~p~~ 283 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGYY------KPALIESRF--FPALQGESGKMSASDPNSAIYVTDTPKE 283 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCCC------Ccceecccc--ccCCCCCCCcCcCcCCCCeeeccCCHHH
Confidence 47999999999999999999873 234455433 433333 589999987 6988873333
No 122
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=96.83 E-value=0.00068 Score=59.63 Aligned_cols=40 Identities=35% Similarity=0.635 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhCCC---hhhhhhcC-CCCCCHHhHHHHhh
Q 010043 474 LLYAHARICSIIRKSGKD---IEELKKVG-LVFEVEALTMFQRL 513 (519)
Q Consensus 474 iqYa~aR~~silrka~~~---~~~~~~~~-~~l~~~~e~~l~~~ 513 (519)
|||+|+|++||++|++.+ .+...+.+ ..+.+++|++|...
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~ 44 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRL 44 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHH
Confidence 699999999999998742 22222344 56889999999864
No 123
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.43 E-value=0.011 Score=62.49 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=41.8
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
...| +-+.|.||..|+.....+++.++... . .-+..-++.+.+|.||||+.||.|++++
T Consensus 176 l~~d--i~~gG~DQ~~ni~~g~dLar~~~~~~------~--~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 176 LNVD--LQIGGSDQWGNIRKGRDLIRRNLPSL------G--FGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred HcCC--eeEecchhHHHHHHHHHHHHHhcCCC------c--eeeceeeecCCCCCCccCCCCCcccCCc
Confidence 3556 55799999999999888887776421 1 1122234666789999999998887754
No 124
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.011 Score=62.69 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=37.5
Q ss_pred EEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcc
Q 010043 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (519)
Q Consensus 342 I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 400 (519)
+=+-|.||...+-.-..+.+.+|.. .+...|++ ++.+.+|+||||+.|+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~------~~~~lt~P--LL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK------KVVGLTTP--LLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCC------CeEEEEec--cccCCCCCcccccCCCce
Confidence 5568999876666556777888884 24556665 588889999999999843
No 125
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.052 Score=60.38 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=80.4
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHH--HHHHHHhhCCCCCccccccHHHHHHHHHHHhcc
Q 010043 139 IAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM--LIEYLFEKFPNSEDANETAIGELQEFYRRSKNR 216 (519)
Q Consensus 139 p~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~--l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~ 216 (519)
-+|.+|+||++|-|+-|++-|++-+.|.+|..+...+=.|.++.- +..++ ++.. +.
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl----~~~~------------------~~ 123 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSL----TESE------------------GS 123 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhh----hhcc------------------cc
Confidence 569999999999999999999999999999999888888877652 11111 0000 00
Q ss_pred cCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccccc-------CcHHHHHHHHHHC
Q 010043 217 FDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYN-------PYIPGVIDELSKQ 289 (519)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~~~-------~~v~~vi~~L~~~ 289 (519)
. ..-+++ +.-+.|++..++.+++.+.+.||--||. .-|- -.--+++..|.++
T Consensus 124 ~-s~leiR------------------~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~--n~Y~T~~~~ye~aQL~iF~~lyek 182 (937)
T KOG0433|consen 124 R-TPLEIR------------------AKARIFADEAIKKQMEAFRRWGVTADWE--NPYVTKSPSYEAAQLDIFAKLYEK 182 (937)
T ss_pred C-CcHHHH------------------HHHHHHHHHHHHHHHHHHHHheeeccCC--CceeecChHHHHHHHHHHHHHHhc
Confidence 0 011222 2234467777888999999999988984 3331 1234789999999
Q ss_pred CCeEee
Q 010043 290 GLVEES 295 (519)
Q Consensus 290 g~~~~~ 295 (519)
|++|++
T Consensus 183 gLvyR~ 188 (937)
T KOG0433|consen 183 GLVYRS 188 (937)
T ss_pred cceecc
Confidence 999963
No 126
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.012 Score=65.29 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=42.9
Q ss_pred EEEecCCccc-cHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHH
Q 010043 342 IYVTDVGQQL-HFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 342 I~V~g~~q~~-hf~~~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e 408 (519)
+|.=|.||.. -|+......-| -+.. |...-+.| |++.+++|.||||+.||+|..+.+++-
T Consensus 569 v~LEG~DQ~rGWFQSsLLTsvA~q~kA----PYk~vivH---GFtlDE~G~KMSKSlGNVidP~~v~~G 630 (937)
T KOG0433|consen 569 VYLEGVDQFRGWFQSSLLTSVAVQNKA----PYKKVIVH---GFTLDENGNKMSKSLGNVVDPTMVTDG 630 (937)
T ss_pred eEEecchhcchHHHHHHHHHHHHhccC----Cchheeee---eeEecCCccchhhcccCcCCHHHHhCC
Confidence 5667888854 66654322222 2332 44456777 779999999999999999999999886
No 127
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.70 E-value=0.042 Score=62.03 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=43.1
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCC-C-cceeeec-CCcccHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-G-KRLRTRF-SEVVRLVDLLDE 408 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~-g-~kmSkR~-G~~v~l~dll~e 408 (519)
+++|.+. +|.||..|+.-...++..+|..+ .+.+.|.+ ++-+-+ | .|||||. ++.|.|.|==++
T Consensus 174 l~adivp--vG~DQ~qh~eLaRdia~~~g~~~-----kpvil~~~--~LpGL~gg~~KMSKS~p~naI~L~Dspe~ 240 (682)
T PTZ00348 174 LKADICQ--LGLDQRKVNMLAREYCDLIGRKL-----KPVILSHH--MLAGLKQGQAKMSKSDPDSAIFMEDTEED 240 (682)
T ss_pred cCCCEEE--eCccHHHHHHHHHHHHHHhCCCC-----Cceecccc--cCcCCCCCCCcCCCCCCCCeecccCCHHH
Confidence 4677655 99999999987777888888532 12333433 353332 3 6999999 689988773333
No 128
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.078 Score=59.08 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~ 188 (519)
.+.|.++-|.-|..+|.||+||+-+.-=-++-+-.-|..|++|..-+...=.|.+|.-.+.-+
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKL 104 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKL 104 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHH
Confidence 367899999999999999999999999999999999999999999999999999997666444
No 129
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.071 Score=58.90 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=84.9
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+....=..|=.||-.|-||+-...|-|++-|..-..||+|.|.+..+-+|.++.--+. ++.+ -.+.+ +
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eID---KkLg---I~g~~------d 106 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEID---KKLG---ITGRD------D 106 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeec---hhcC---CCCHH------H
Confidence 3444445567899999999999999999999999999999999999999997752210 0000 00001 1
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCc--eeeecccccc---CcHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD--LEEKGESFYN---PYIPGVI 283 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~--fd~~~es~~~---~~v~~vi 283 (519)
+.+- |=...-..++.++-.+..+.+++..|||-= |+-....+|- +.+=.++
T Consensus 107 V~km------------------------GI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 107 VMKM------------------------GIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred HHHH------------------------hHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 1111 111112334556666667778888999854 4222235553 3455789
Q ss_pred HHHHHCCCeEe
Q 010043 284 DELSKQGLVEE 294 (519)
Q Consensus 284 ~~L~~~g~~~~ 294 (519)
++|-++|++|.
T Consensus 163 keL~~kglVYR 173 (1070)
T KOG0434|consen 163 KELHEKGLVYR 173 (1070)
T ss_pred HHHHhcCceec
Confidence 99999999984
No 130
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.74 E-value=0.073 Score=53.84 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=47.4
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEA 409 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~ 409 (519)
.+++.+ .+|.||..|+.--..+++.++..+ .+...+.+ ++.+.+|.|||||.|+.+.++.+.+..
T Consensus 152 ~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~~-----~p~~l~~p--~l~~l~G~KMSKS~~~~i~l~~~~dsp 216 (273)
T cd00395 152 EGCDIQ--PGGSDQWGNITLGRELARRFNGFT-----IAEGLTIP--LVTKLDGPKFGKSESGPKWLDTEKTSP 216 (273)
T ss_pred cCCcEE--EecHHHHHHHHHHHHHHHHhCCCC-----CCeEEeec--cccCCCCCcCCCCCCCCccccccCCCH
Confidence 455655 499999999999888998885311 12334443 577888999999999998876665543
No 131
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.52 E-value=0.054 Score=56.26 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=43.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCC-CCCCCCcEE---EEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA-DDSTYPKAS---HVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~-~~~~~~~~~---Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
+++|.+. +|.||..|+.--..++..++..-+ ..+. |... |.. ++-+-+|+|||||.++.|.|.|
T Consensus 148 ~~~d~Vp--vG~DQ~qhleLtRdiA~rfn~~yg~~f~~-P~~~~~~~~~--~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 148 FQATHVP--VGKDQIQHIEIARDIATYFNHTFGDTFTL-PEYVIQEEGA--ILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred ccCCEEE--eccccHHHHHHHHHHHHHHHHhccccCCC-ceeccccccc--cccCCCCCCCCCCCCCcccccC
Confidence 5677665 999999999988888888772100 0011 2111 332 3556678899999999988765
No 132
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.29 E-value=0.061 Score=54.27 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHH
Q 010043 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 337 ~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e 408 (519)
+.|.+ ++|.||..|+..-..+++.+++. .+ .++..-++.+.+|+|||||.|+.+. ..+.|.
T Consensus 151 ~~~l~--~~G~DQ~~~i~~~rd~a~r~~~~------~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~ds 211 (269)
T cd00805 151 DVDLQ--LGGSDQRGNITLGRDLIRKLGYK------KV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLDS 211 (269)
T ss_pred hCCee--EecHHHHHHHHHHHHHHHHhCCC------Cc--EEEeeccccCCCCCcccCCCCCccc-ccCCCC
Confidence 34544 59999999999999999999884 12 2333356778899999999999985 444443
No 133
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.97 E-value=0.16 Score=54.27 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=45.8
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCC--CCC--CCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS--ADD--STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~--~~~--~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e 408 (519)
+++|.|- +|.||..|..--..+++.++..- +.. |.+....|+ -+|.+-+|+|||||.||.|.|.|=-++
T Consensus 147 y~ad~VP--VG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~--~~I~gLdg~KMSKS~~n~I~L~Ds~~~ 219 (431)
T PRK12284 147 FNAHKVP--VGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESV--ATLPGLDGRKMSKSYDNTIPLFAPREE 219 (431)
T ss_pred cCCCEEE--EcchhHHHHHHHHHHHHHHhhhcCCcccCCCcccccccc--ccccCCCCccccCCCCCEeeecCCHHH
Confidence 5678776 99999999998888888876321 000 111111222 246666789999999999987653333
No 134
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.88 E-value=0.12 Score=52.88 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=44.0
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcC------CCCCCCCCCCcEEEEEeEEEEcCCC-cceeeecCC-cccHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG------WLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSE-VVRLVDLLD 407 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg------~~~~~~~~~~~~~Hv~~g~V~~~~g-~kmSkR~G~-~v~l~dll~ 407 (519)
++.+.|= ||.||+.|+..-..+++.++ +.. | ..+.|=. ..|-+-+| +|||||.+| +|.|.|=-+
T Consensus 144 ~~a~~VP--VG~DQ~qHleLtRDiA~rfn~~y~~~f~~---P--~~~~~~~-~~i~gL~g~~KMSkS~~ns~I~L~D~~~ 215 (314)
T COG0180 144 YQATLVP--VGEDQDQHLELTRDIARRFNHLYGEVFPL---P--EALISKV-ARLPGLDGPGKMSKSDPNSAIFLLDDPK 215 (314)
T ss_pred ccCCeec--cCCCchHHHHHHHHHHHHHHhhcCCccCC---c--cccccCC-CcccCCCCCCcccccCCCCeeeccCCHH
Confidence 4555554 99999999999999999887 321 1 1222211 24555556 799999999 888765444
Q ss_pred HH
Q 010043 408 EA 409 (519)
Q Consensus 408 e~ 409 (519)
.+
T Consensus 216 ~i 217 (314)
T COG0180 216 TI 217 (314)
T ss_pred HH
Confidence 43
No 135
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=89.24 E-value=0.25 Score=50.33 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=47.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-ceeeecCC-cccHHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSE-VVRLVDLLDEA 409 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~-~v~l~dll~e~ 409 (519)
.++|. =++|.||..|+.-...++..+|.... -..+...|.+ ++.+.+|. |||||.+| .|.|.|=-++.
T Consensus 148 l~~~~--~~~G~DQ~~~~~l~rd~a~k~~~~~~--~~~p~~l~~~--~l~~l~G~~KMSKS~~ns~I~L~d~~~~i 217 (292)
T PF00579_consen 148 LKADL--VPGGIDQRGHIELARDLARKFNYKEI--FPKPAGLTSP--LLPGLDGQKKMSKSDPNSAIFLDDSPEEI 217 (292)
T ss_dssp TTHSE--EEEEGGGHHHHHHHHHHHHHHTHHST--SSS-EEEEET--CBBSTTSSSBTTTTTTGGS-BTTTTHHHH
T ss_pred ecccc--ccccchHHHHHHHHHHHHhhhccccc--ccCchheeec--cccccCCccccCccCCccEEEEeccchhH
Confidence 45564 45999999999999899998887300 0023444443 57778888 99999999 88887765554
No 136
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.49 E-value=0.41 Score=49.86 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=46.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCC-CCCCCCcEEEEEe-EEEEcCCCc--ceeeecC---CcccHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA-DDSTYPKASHVGF-GLVLGEDGK--RLRTRFS---EVVRLVDLLDE 408 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~-~~~~~~~~~Hv~~-g~V~~~~g~--kmSkR~G---~~v~l~dll~e 408 (519)
+++|.+. +|.||..|+.--..++..++..-+ ..+ .|...|..+ .+|.+-+|. |||||.+ +.|.|.|=-++
T Consensus 137 ~~~divp--vG~DQ~~h~elaRdia~~~n~~~~~~f~-~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~ 213 (333)
T PRK00927 137 YKADLVP--VGEDQKQHLELTRDIARRFNNLYGEVFP-VPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKT 213 (333)
T ss_pred cCCCEEe--eccchHHHHHHHHHHHHHhhhhccccCC-CChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHH
Confidence 5777665 999999999999899988874100 000 123333322 345555554 9999999 89988774344
Q ss_pred H
Q 010043 409 A 409 (519)
Q Consensus 409 ~ 409 (519)
.
T Consensus 214 I 214 (333)
T PRK00927 214 I 214 (333)
T ss_pred H
Confidence 3
No 137
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=88.21 E-value=0.28 Score=51.00 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=43.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCC--CC--cEEEEEeEEEEcCCC-cceeeecCCcccHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST--YP--KASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~--~~--~~~Hv~~g~V~~~~g-~kmSkR~G~~v~l~dll~e 408 (519)
+++|.+. +|.||..|+.-...++..+|..-+. +. .+ ...|. -+|.+-+| +|||||.++.|.|.|=-++
T Consensus 141 ~~~d~vp--vG~DQ~~h~~laRdiA~~~n~~~~~-~~~~~p~~~~~~~--~~i~~L~g~~KMSKS~~~~I~L~D~pe~ 213 (333)
T PRK12282 141 FKATLVP--VGDDQLPMIEQTREIVRRFNSLYGT-DVLVEPEALLPEA--GRLPGLDGKAKMSKSLGNAIYLSDDADT 213 (333)
T ss_pred hCCCEEE--eccccHHHHHHHHHHHHHHhhhcCC-ccccCchhcccCC--CcccCCCCCCcCCCCCCCeeeeeCCHHH
Confidence 4677665 9999999999999999888831000 00 01 11122 13444455 7999999999988764333
No 138
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.18 E-value=0.19 Score=55.66 Aligned_cols=101 Identities=21% Similarity=0.337 Sum_probs=54.9
Q ss_pred EEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHH-----hcCCCCCCHHHHHHHHHHhh---hhHHHHHhhcCCC-
Q 010043 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE-----RGKDKEWTEEELEQTAEAVG---YGAAKYFDLKNNR- 452 (519)
Q Consensus 382 g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~-----~~~~~~~~~~e~~~~a~~vg---~~avry~~L~~~~- 452 (519)
|+|+-.||+|||||.-|+-....+++.--..|+....- |.....+.++-..++-..|= -.+.||+.-....
T Consensus 592 GlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~ 671 (1070)
T KOG0434|consen 592 GLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALL 671 (1070)
T ss_pred eeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence 89999999999999999988888888744444321110 11223344444444443332 2556665544332
Q ss_pred --CCCccccHHHHhcccCCchhHHHHHHHHHHHHH
Q 010043 453 --LTNYTFSFDQMLNDKGNTAVYLLYAHARICSII 485 (519)
Q Consensus 453 --~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~sil 485 (519)
.+..+|+++..... .+ +-=+.-+|++.|+.
T Consensus 672 ~~~~g~~f~~~~~~~S--~N-vmDrWI~a~~qslv 703 (1070)
T KOG0434|consen 672 KKETGKDFVFDDSVTS--SN-VMDRWILASTQSLV 703 (1070)
T ss_pred ccccCCcccccccccc--ch-hHHHHHHHHHHHHH
Confidence 34455665554431 11 12233355555554
No 139
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.84 E-value=0.76 Score=48.76 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEcCCCcceeeecCCcccHHHHHHH
Q 010043 383 LVLGEDGKRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 383 ~V~~~~g~kmSkR~G~~v~l~dll~e 408 (519)
+|.+-+|+|||||.|+.|.|.|=-++
T Consensus 256 ~I~gLdg~KMSKS~~n~I~L~Ds~~~ 281 (398)
T PRK12283 256 KMPGLDGQKMSKSYGNTIGLREDPES 281 (398)
T ss_pred cccCCCCCcCCCCCCCeeeCcCCHHH
Confidence 45556789999999999988663333
No 140
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.89 E-value=2.6 Score=46.29 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=48.9
Q ss_pred CceEEEEecCCCcCCCCccchhHHHH----------------------------HHHHHHHHHHHCCCeEEEEeccCCcc
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTI----------------------------IGDSLARMLEFSNVEVLRRNHVGDWG 178 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~i----------------------------iGD~lariL~~~G~~V~~~~yi~D~G 178 (519)
|++|+- -..|-|+|-|||||+.... ..++|..+-+.+||+-.++.|.-|.-
T Consensus 246 GGkV~T-RFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKVVT-RFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCeeEE-eCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 556655 5569999999999996432 45789999999999999999999998
Q ss_pred hHHHHHHHHH
Q 010043 179 TQFGMLIEYL 188 (519)
Q Consensus 179 ~Q~~~l~~~~ 188 (519)
-|+-.++.-+
T Consensus 325 dqLy~~av~L 334 (764)
T KOG1148|consen 325 DQLYELAVEL 334 (764)
T ss_pred HHHHHHHHHH
Confidence 8876665433
No 141
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.71 E-value=1.4 Score=49.17 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=32.5
Q ss_pred ceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCcccc
Q 010043 391 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFS 459 (519)
Q Consensus 391 kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~~Fd 459 (519)
||||+++|.|.+.|++++ .|++++|...|-..+ +.++..|
T Consensus 617 KMSKSK~NGVdP~~~v~~-----------------------------yG~D~tRl~ilf~ap~~~~~nW~ 657 (876)
T KOG0435|consen 617 KMSKSKHNGVDPADVVLE-----------------------------YGVDTTRLYILFAAPPRDPINWN 657 (876)
T ss_pred HhhhcccCCCCHHHHHHH-----------------------------hCchHHHHHHHhhCCcccccccc
Confidence 899999999999999888 589999988887665 5555444
No 142
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=72.02 E-value=3.8 Score=41.66 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=27.6
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEE
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRR 171 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~ 171 (519)
+++..| |++--|||+||+||+-... .+.++.+ .|++|...
T Consensus 3 ~~~~~~-y~G~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~ 42 (292)
T PF00579_consen 3 NKPFRV-YTGIDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIIL 42 (292)
T ss_dssp HSSEEE-EEEEESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEE
T ss_pred CCCcEE-EEeECCCCcccchHHHHHH---HHHHHHh-cCCccceE
Confidence 445566 8999999999999886553 3344444 89988763
No 143
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=71.42 E-value=3.9 Score=41.22 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=27.6
Q ss_pred ecCCCcCC-CCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~-plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--||| .+|+||+-.+ ..+.++.+ .|++|. ..|+||
T Consensus 4 y~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~~--ilI~D~ 42 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEVI--VLIGDA 42 (269)
T ss_pred EEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeEE--EEECCC
Confidence 67888999 8999998753 25666666 598864 456665
No 144
>PLN02886 aminoacyl-tRNA ligase
Probab=71.21 E-value=4.9 Score=42.72 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=42.3
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCC-------------CCCCCCcEEEEE-eEEE-EcCCC-cceeeecC--
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA-------------DDSTYPKASHVG-FGLV-LGEDG-KRLRTRFS-- 397 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~-------------~~~~~~~~~Hv~-~g~V-~~~~g-~kmSkR~G-- 397 (519)
+++|.+. +|.||..|+.--..+++.++..=+ ..+ .+...|-+ ...| .+.+| +|||||..
T Consensus 183 ~~a~~VP--VG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~-~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~ 259 (389)
T PLN02886 183 YQADLVP--VGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFK-VPEALIPPAGARVMSLTDGTSKMSKSAPSD 259 (389)
T ss_pred cCCCeEE--EccchHHHHHHHHHHHHHHhhhccccccccccccCCceec-CCeeccCcccceeeeCCCCCCcCCCCCCCC
Confidence 5777665 999999999988888888764100 000 11111211 1123 23344 59999984
Q ss_pred -CcccHHHHHHHH
Q 010043 398 -EVVRLVDLLDEA 409 (519)
Q Consensus 398 -~~v~l~dll~e~ 409 (519)
+.|.|.|=-++.
T Consensus 260 ~s~I~L~Ds~e~I 272 (389)
T PLN02886 260 QSRINLLDPPDVI 272 (389)
T ss_pred CCeEEecCCHHHH
Confidence 688887644444
No 145
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.72 E-value=2.2 Score=48.09 Aligned_cols=20 Identities=5% Similarity=0.267 Sum_probs=18.2
Q ss_pred CcceeeecCCcccHHHHHHH
Q 010043 389 GKRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 389 g~kmSkR~G~~v~l~dll~e 408 (519)
++||||+.||+.||++-++.
T Consensus 708 sEKMSKSTGNfmTL~qaieK 727 (1080)
T KOG0437|consen 708 SEKMSKSTGNFMTLEQAIEK 727 (1080)
T ss_pred chhhccccCCeeeHHHHHHH
Confidence 67899999999999988887
No 146
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=62.66 E-value=7.3 Score=39.39 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=23.7
Q ss_pred ecCCCcCC-CCccchhHHHHHHHHHHHHHHHCCCeEEEE
Q 010043 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRR 171 (519)
Q Consensus 134 ~~SpNp~~-plHIGHlR~~iiGD~lariL~~~G~~V~~~ 171 (519)
|++--||| .||+||+-. =...+-+...|++|...
T Consensus 3 y~G~~PTg~~lHlGh~~~----l~~~~~lq~~g~~~~~~ 37 (273)
T cd00395 3 YCGIDPTADSLHIGHLIG----LLTFRRFQHAGHRPIFL 37 (273)
T ss_pred EEeEcCCCCCccHHHHHH----HHHHHHHHHCCCCEEEE
Confidence 67788999 699999744 23344455679987553
No 147
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=58.69 E-value=2.5e+02 Score=29.76 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCCCCeeeEEEecCcEEEEEeChhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhH
Q 010043 70 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLR 149 (519)
Q Consensus 70 ~~iA~~i~~~l~~~~~v~~i~vagpGfIN~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR 149 (519)
-.|+++|+.+-.. + + +.+++-| -......+++.++-+............+.|+|--+|-.| -.-+.+
T Consensus 171 T~L~~~Iak~~~~-d-v--vVyv~iG-----ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p----~~~R~~ 237 (369)
T cd01134 171 TVIQQSLSKYSNS-D-I--VIYVGCG-----ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP----VAAREA 237 (369)
T ss_pred HHHHHHHHhCCCC-C-E--EEEEEeC-----CChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC----HHHHHH
Confidence 5677777776322 2 2 2234334 445566666655432211101111345788886666554 445778
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHH---HhhCCCCCccccccHHHHHHHHHHHhc
Q 010043 150 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL---FEKFPNSEDANETAIGELQEFYRRSKN 215 (519)
Q Consensus 150 ~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~---~~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (519)
+.-.|=++|..++.+|++|... ++|.=+ ++...+-+ ..+.|....|+..-..+|.++|.++..
T Consensus 238 s~yta~tiAEYfrd~G~dVll~--~Ds~tR-~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~ 303 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALM--ADSTSR-WAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGR 303 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE--EcChhH-HHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhccc
Confidence 8899999999999999999988 466332 22222111 123344445665555567788887653
No 148
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=49.80 E-value=15 Score=38.20 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=26.5
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~ 179 (519)
|++--|||++|+||.-+++. -.+-|...|. | ...|.||=.
T Consensus 6 ~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~ha 45 (333)
T PRK12282 6 LTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQQA 45 (333)
T ss_pred EEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccchh
Confidence 78889999999999744332 1224556664 4 466778633
No 149
>PLN02886 aminoacyl-tRNA ligase
Probab=47.42 E-value=13 Score=39.50 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.9
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.+|+||.-+++ .-...+.+ |+++ .+.|-||
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~--~~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDT--FFCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCE--EEEEecH
Confidence 8999999999999976654 33333433 7776 3667775
No 150
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.05 E-value=25 Score=36.34 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=27.2
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCC
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGD 176 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D 176 (519)
+|+--|+|.||+||- +|-.-.++.-..++ +..-+.|-|
T Consensus 9 lSG~~PSG~lHLGny----~ga~~~~v~~q~~~-~~~f~~IaD 46 (314)
T COG0180 9 LSGIQPSGKLHLGNY----LGAIRNWVLLQEEY-YECFFFIAD 46 (314)
T ss_pred EecCCCCCCcchhHh----HHHHHHHHHHhccc-CceEEEEec
Confidence 799999999999998 55555666666665 444445555
No 151
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.80 E-value=76 Score=25.60 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=45.2
Q ss_pred hHhHHHHHHHHHHHHHHhc-CCCCCCCccccc--c--cC-C-CCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhC
Q 010043 8 TGNVKRELEKVFDLALKAT-VPNETDVRPLIA--A--CT-A-KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 80 (519)
Q Consensus 8 ~~~~~~~~~~~~~~al~~~-~~~~~~~~~~i~--~--~~-~-~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l 80 (519)
|..++++|+..|-+++... +|-. ....++. | |. + +-|+.+.. |+.++|.+-...--.|+|.++|..|+++.
T Consensus 1 ~m~v~~e~~~qiv~~~k~a~fPIn-n~~eL~~ALP~G~dttc~~G~~e~t-A~E~~kLlT~~DFPfk~a~~vad~iv~~~ 78 (80)
T COG4746 1 MMTVREEIREQIVEALKGADFPIN-NPEELVAALPSGPDTTCESGGVEVT-AAEAGKLLTDADFPFKSAEQVADTIVNKA 78 (80)
T ss_pred CccHHHHHHHHHHHHHccCCCCCC-CHHHHHHhccCCCCCCccCCCeeee-HHHHHhhccccCCCCCCHHHHHHHHHHhc
Confidence 3467888888888888753 3311 1111221 2 21 2 56777766 78888877544444589999999999875
No 152
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=42.74 E-value=16 Score=38.02 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=26.5
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~ 179 (519)
|++--|||++|+||.=+++ .-+.++-+. ++| ...|.||=.
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~~--~~~--~~~IaD~ha 44 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQDE--YEC--FFCIADLHA 44 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHhc--CCe--EEEEecHHH
Confidence 7788999999999986553 233344442 554 456788644
No 153
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=40.58 E-value=5.1e+02 Score=29.27 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=72.5
Q ss_pred HHHHHHHHhCCCCCCeeeEEEecCcEEEEEeChhHHHHHHHHHHH--cCCCCCCccCCCceEEEEecCCCcCCCCccchh
Q 010043 71 PVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLV--DGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHL 148 (519)
Q Consensus 71 ~iA~~i~~~l~~~~~v~~i~vagpGfIN~~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHl 148 (519)
.++++|+..-.. + -+.++|-| -.-....+++.++-+ ++..+ ...-.++|+|--+|--| -.-..
T Consensus 242 vl~~~iak~a~a-d---ivVyvg~G-----ERg~E~~e~l~ef~~l~dp~~g--~~~m~RTvlVanTSn~P----v~aR~ 306 (586)
T PRK04192 242 VTQHQLAKWADA-D---IVIYVGCG-----ERGNEMTEVLEEFPELIDPKTG--RPLMERTVLIANTSNMP----VAARE 306 (586)
T ss_pred HHHHHHHhcCCC-C---EEEEEEcC-----cChHHHHHHHHHHHhhcccccc--cccceeEEEEEECCCCC----HHHHH
Confidence 666777765322 1 12334434 344455565554322 11111 11245789986666544 44577
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH---hhCCCCCccccccHHHHHHHHHHHhc
Q 010043 149 RSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDANETAIGELQEFYRRSKN 215 (519)
Q Consensus 149 R~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~---~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (519)
++.-.|=++|..+|.+||+|.... ++.=+ ++...+-+- .+.|....|+..--.+|.++|.++..
T Consensus 307 ~s~ytgiTiAEYfRd~G~~Vllm~--DStSR-~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~ 373 (586)
T PRK04192 307 ASIYTGITIAEYYRDMGYDVLLMA--DSTSR-WAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGR 373 (586)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEe--cChHH-HHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcc
Confidence 888899999999999999999843 44322 332222111 23344455676656667888887653
No 154
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=40.32 E-value=26 Score=37.72 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.2
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.+|+||.-+++- . ..++....||++ .+.|-||
T Consensus 6 lSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~--~~~IADl 45 (431)
T PRK12284 6 LTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVES--FYFLADY 45 (431)
T ss_pred EEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcE--EEEeech
Confidence 88999999999999644432 1 233444568875 3445554
No 155
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=39.20 E-value=27 Score=33.23 Aligned_cols=33 Identities=27% Similarity=0.169 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 145 VGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 145 IGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
+||--+.+|.=-+||.|+..|++|.++.-++=+
T Consensus 71 ~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 71 AGWSFGGILAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp EEETHHHHHHHHHHHHHHHTT-SESEEEEESCS
T ss_pred hccCccHHHHHHHHHHHHHhhhccCceEEecCC
Confidence 599999999999999999999999999877743
No 156
>PRK05320 rhodanese superfamily protein; Provisional
Probab=35.59 E-value=99 Score=30.95 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHhCCCCCCeeeEEEecCcEEEEEeC-hhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCcc
Q 010043 67 KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLS-KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHV 145 (519)
Q Consensus 67 ~~P~~iA~~i~~~l~~~~~v~~i~vagpGfIN~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHI 145 (519)
.+|+++.+.+.+.....+.-.+|-+|.-| ||-+++ +..-.+.+...+..... ..+-..-++.+.+.|-+.|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~G~i~ia~eG-iN~t~~g~~~~id~~~~~l~~~~~-----~~dl~~k~~~~~~~pF~~l~v 88 (257)
T PRK05320 15 DDPETLRPLVLARCEALGLKGTILLAPEG-INLFLAGTREAIDAFYAWLRADAR-----FADLQVKESLSDSQPFRRMLV 88 (257)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEcCCC-ceEEEEeeHHHHHHHHHHHhhCCC-----ccCceeecccccCCCchhccc
Confidence 58999999998887666677889999999 899998 44445555555554322 123334468888889888888
Q ss_pred chhHHH
Q 010043 146 GHLRST 151 (519)
Q Consensus 146 GHlR~~ 151 (519)
-.-...
T Consensus 89 k~k~ei 94 (257)
T PRK05320 89 KLKREI 94 (257)
T ss_pred hhhhHH
Confidence 555443
No 157
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=35.40 E-value=27 Score=36.39 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=24.7
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.+|+||.-+++- ...++.+..|++ ..+.|-||
T Consensus 7 ~sGiqPTG~~HLGnylga~k--~~~~lq~~~~~~--~~~~IADl 46 (332)
T PRK12556 7 LTGIKPTGYPHLGNYIGAIK--PALQMAKNYEGK--ALYFIADY 46 (332)
T ss_pred EEEECCCCcchHHHHHHHHH--HHHHHHHhcCCe--EEEEEech
Confidence 89999999999999644332 112344444543 44445554
No 158
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=33.21 E-value=33 Score=25.54 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=17.9
Q ss_pred HHHH--HHHHHHCCCeEEEEeccCCc
Q 010043 154 GDSL--ARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 154 GD~l--ariL~~~G~~V~~~~yi~D~ 177 (519)
|.+. .|+|+.+||+|..+.|. ||
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip~~-eW 42 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIPYY-EW 42 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEecHH-HH
Confidence 5444 57899999999999876 44
No 159
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=33.16 E-value=64 Score=27.14 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCCc
Q 010043 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGF 319 (519)
Q Consensus 277 ~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~ 319 (519)
+.+.+++++|++.|++...+|.++=+..-.-++.--++.++|+
T Consensus 36 ~~v~~~l~~Le~~GLler~~g~~iK~~~~k~K~~~e~~~hHtY 78 (92)
T PF10007_consen 36 EEVREALEKLEEMGLLERVEGKTIKRSEAKFKPKKEVHKHHTY 78 (92)
T ss_pred HHHHHHHHHHHHCCCeEEecCcccchhhhhcccchhhhcCCce
Confidence 3578899999999999999998643332222333345556664
No 160
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.59 E-value=15 Score=37.24 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc---------CCCcceeeecCC
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGKRLRTRFSE 398 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~---------~~g~kmSkR~G~ 398 (519)
|+.++|= ||.||+.|..-...+++.++- .....+.-++-.++.. ...+||||+.+|
T Consensus 154 YksThVP--VGeDQsQHleL~r~lA~~fN~-----~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n 218 (347)
T KOG2713|consen 154 YKSTHVP--VGEDQSQHLELARHLAQAFNK-----TYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPN 218 (347)
T ss_pred hcccccc--CCccHHHHHHHHHHHHHHHhh-----hccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCC
No 161
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=31.74 E-value=32 Score=36.67 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=24.6
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~-~G~~V~~~~yi~D~ 177 (519)
+++--|||.+|+||.-+++ .+..+. .|+++ -+.|-||
T Consensus 6 ~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~--~~~IADl 43 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYEC--FFFVADW 43 (398)
T ss_pred EEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcE--EEEeecH
Confidence 6788899999999985543 343332 36654 4566675
No 162
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=28.75 E-value=5.2e+02 Score=29.18 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=52.5
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH---hhCCCCCcccccc
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDANETA 202 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~---~~~~~~~~~~~~~ 202 (519)
..++|+|--+|- ..-.-..+++-.|=+||..+|.+||+|.-.. ++.=+ ++...+-+- .+.|....|+..-
T Consensus 283 m~RTvlVanTSn----~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~--DS~sR-~AeAlREIs~~lgE~P~~eGYP~yl 355 (578)
T TIGR01043 283 MERTVLIANTSN----MPVAAREASIYTGITIAEYFRDMGYDVALMA--DSTSR-WAEAMREISGRLEEMPGEEGYPAYL 355 (578)
T ss_pred ccceEEEEECCC----CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEe--cChhH-HHHHHHHHHHhcCCCCCCCCcCccH
Confidence 457888855544 4455678899999999999999999999764 55322 332222111 1234444566544
Q ss_pred HHHHHHHHHHHh
Q 010043 203 IGELQEFYRRSK 214 (519)
Q Consensus 203 i~~l~~~y~~~~ 214 (519)
-..|.++|.++.
T Consensus 356 ~SrLa~~yERAG 367 (578)
T TIGR01043 356 ASRLAEFYERAG 367 (578)
T ss_pred HHHHHHHHHhhc
Confidence 556778887765
No 163
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.30 E-value=1.1e+02 Score=32.54 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=36.2
Q ss_pred CeEEEEecCCccccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccH
Q 010043 339 EWIIYVTDVGQQLHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (519)
Q Consensus 339 d~~I~V~g~~q~~hf~~~~~i~~-~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l 402 (519)
..-+-+-|+||-+|...-..... .++.. ....-+-|-+++..+|.|+.|+.||.|.|
T Consensus 227 g~~~QlGGsDQwGNitaG~dlI~ki~~~~-------~~vfGlT~PLlTsstG~KlGKSaGnAvWL 284 (467)
T KOG2623|consen 227 GCRFQLGGSDQWGNITAGTDLIRKIMPIQ-------AFVFGLTFPLLTSSTGAKLGKSAGNAVWL 284 (467)
T ss_pred CeeEEecccccccccchHHHHHHHhcccc-------cceeeeeeeeEecCcchhhccCCCceEEe
Confidence 34567799999887765433332 33221 11122233457778899999999999976
No 164
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=26.82 E-value=32 Score=29.06 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=11.6
Q ss_pred cCCCcCCCCccchhHH
Q 010043 135 SSPNIAKEMHVGHLRS 150 (519)
Q Consensus 135 ~SpNp~~plHIGHlR~ 150 (519)
+..++ +|+|.||..-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 35566 8999999964
No 165
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.78 E-value=1.1e+02 Score=27.67 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=31.0
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEec
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNH 173 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~y 173 (519)
.|+|-|==.|+||.+|-|. ++..|...||+|.-+|=
T Consensus 16 ~K~IAvVG~S~~P~r~sy~-----------V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYR-----------VAKYLQQKGYRVIPVNP 51 (140)
T ss_pred CceEEEEecCCCCCccHHH-----------HHHHHHHCCCEEEeeCc
Confidence 5677777899999999774 78999999999999885
No 166
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=23.76 E-value=55 Score=27.52 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEEe
Q 010043 148 LRSTIIGDSLARMLEFSNVEVLRRN 172 (519)
Q Consensus 148 lR~~iiGD~lariL~~~G~~V~~~~ 172 (519)
.||+-+..+|-++|++.|.+|.+-.
T Consensus 6 irNa~Le~yL~~lL~~~G~~v~~y~ 30 (92)
T PF09456_consen 6 IRNAYLESYLQRLLSYHGFQVQRYE 30 (92)
T ss_dssp ---HHHHHHHHHHHCTTTEEEEE-S
T ss_pred ehhHHHHHHHHHHHHHCCcEEEEec
Confidence 6999999999999999999998865
No 167
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=23.75 E-value=57 Score=30.38 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCeEEEEeccCCc
Q 010043 156 SLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 156 ~lariL~~~G~~V~~~~yi~D~ 177 (519)
-|||.||.+||++...+-..|+
T Consensus 17 ~LARwLRllGydt~~~~~~~d~ 38 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESDD 38 (165)
T ss_pred HHHHHHHHcCCceeeeccCCcH
Confidence 4899999999999998755553
No 168
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=23.44 E-value=4.8e+02 Score=26.52 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=37.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccee-eecCCcccHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR-TRFSEVVRLVDLLDE 408 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmS-kR~G~~v~l~dll~e 408 (519)
-+.|.++-.-|+=| .||..+.++ -+++.+ .....+.| .+.-|.- -.|.| |+-..+|++.|+++.
T Consensus 196 ~~~D~LVIFAGACQ-S~yEall~A--GANFAS---SP~RVlIH-alDPV~i--~eKia~T~i~~~V~i~dvi~n 260 (283)
T TIGR02855 196 PSLDQLVIFAGACQ-SHFESLIRA--GANFAS---SPSRVNIH-ALDPVYI--VEKISFTPFMERVNIWEVLRN 260 (283)
T ss_pred CCcccEEEEcchhH-HHHHHHHHc--CccccC---CccceEEe-ccCccee--EEeeeeccccceecHHHHHhh
Confidence 36677776777777 588877554 223432 11233444 2333321 12444 788889999999887
No 169
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=23.23 E-value=64 Score=29.28 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCCeEEEEeccCC
Q 010043 153 IGDSLARMLEFSNVEVLRRNHVGD 176 (519)
Q Consensus 153 iGD~lariL~~~G~~V~~~~yi~D 176 (519)
+| -|||.||.+||||.....+.|
T Consensus 9 L~-~Lar~LR~lG~Dt~~~~~~~D 31 (147)
T PF01927_consen 9 LG-RLARWLRLLGYDTLYSRDIDD 31 (147)
T ss_pred HH-HHHHHHHHCCCcEEEeCCCCh
Confidence 44 479999999999997665545
No 170
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=22.59 E-value=8.1e+02 Score=24.79 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCC-CCeeeEEEecCcEEEEEeChhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchh
Q 010043 70 QPVGQAIMKNLPPS-EMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHL 148 (519)
Q Consensus 70 ~~iA~~i~~~l~~~-~~v~~i~vagpGfIN~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHl 148 (519)
-.|++.+..++... +.+ +.+++-| -......+.+.++...+ .-.+.|+|--+|-.| -+=|.
T Consensus 83 TtLa~~i~~~i~~~~~~~--~V~~~iG-----er~~Ev~e~~~~~~~~~-------~~~~tvvv~~t~d~~----~~~r~ 144 (274)
T cd01133 83 TVLIMELINNIAKAHGGY--SVFAGVG-----ERTREGNDLYHEMKESG-------VLSKTALVYGQMNEP----PGARA 144 (274)
T ss_pred hHHHHHHHHHHHhcCCCE--EEEEEec-----cCcHHHHHHHHHHHhcC-------CcceeEEEEECCCCC----HHHHH
Confidence 45777777665421 111 2233323 44555666665544321 235677876555544 44588
Q ss_pred HHHHHHHHHHHHHHHC-CCeEEEEeccCCcchHHHHHHHHH---HhhCCCCCccccccHHHHHHHHHHHh
Q 010043 149 RSTIIGDSLARMLEFS-NVEVLRRNHVGDWGTQFGMLIEYL---FEKFPNSEDANETAIGELQEFYRRSK 214 (519)
Q Consensus 149 R~~iiGD~lariL~~~-G~~V~~~~yi~D~G~Q~~~l~~~~---~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (519)
+.+..+=++|..++.. |++|.... +|.=+ ++....-+ ..+-|....|+.+-..++.++|.++.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~--Dsltr-~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag 211 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFI--DNIFR-FTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERIT 211 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE--eChhH-HHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhc
Confidence 9999999999999998 99999875 55322 22111111 11223333455555556667776655
No 171
>PRK09620 hypothetical protein; Provisional
Probab=21.85 E-value=1.4e+02 Score=29.40 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=33.0
Q ss_pred CCceEEEEecCCCcCCCC-----ccchhHHHHHHHHHHHHHHHCCCeEEEEe
Q 010043 126 RVKKAVVDFSSPNIAKEM-----HVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~pl-----HIGHlR~~iiGD~lariL~~~G~~V~~~~ 172 (519)
.|++|+| -++| |-.. .|.+.-+--+|-.||+.|...|++|+...
T Consensus 2 ~gk~vlI-TaG~--T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~ 50 (229)
T PRK09620 2 KGKKVLI-TSGG--CLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH 50 (229)
T ss_pred CCCEEEE-eCCC--ccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEe
Confidence 4677777 3333 2222 67777788999999999999999998765
No 172
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=21.16 E-value=8.7e+02 Score=24.60 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=41.9
Q ss_pred eChhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEe
Q 010043 101 LSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (519)
Q Consensus 101 l~~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~ 172 (519)
-......+.+.+....+ ...+.|+|--+|-.|. +=+.+.+..+=++|..++..|++|....
T Consensus 107 er~~ev~e~~~~~~~~~-------~~~~tvvv~~t~d~~~----~~r~~a~~~a~aiAE~fr~~G~~Vlvl~ 167 (274)
T cd01132 107 QKASTVAQVVKTLEEHG-------AMEYTIVVAATASDPA----PLQYLAPYTGCAMGEYFMDNGKHALIIY 167 (274)
T ss_pred cchHHHHHHHHHHHhcC-------ccceeEEEEeCCCCch----hHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 44455555555543322 2345677766665554 3378899999999999999999998875
No 173
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.86 E-value=1.5e+02 Score=28.57 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=32.5
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccC
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 175 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~ 175 (519)
..|.| .|-| +|++=||.-|-++ ..+++.|...|+-+.|-||=+
T Consensus 28 ~~iAl-i~HP---HPl~gGtm~nkvv-~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 28 APIAL-ICHP---HPLFGGTMNNKVV-QTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CceEE-ecCC---CccccCccCCHHH-HHHHHHHHhCCceEEeecccc
Confidence 33444 4444 5788888777655 578999999999999999955
No 174
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.63 E-value=91 Score=25.04 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCeEEEEe
Q 010043 153 IGDSLARMLEFSNVEVLRRN 172 (519)
Q Consensus 153 iGD~lariL~~~G~~V~~~~ 172 (519)
=|+.++++++..|++++|-.
T Consensus 21 DGe~ia~~~~~~G~~~iRGS 40 (74)
T PF04028_consen 21 DGELIARVLERFGFRTIRGS 40 (74)
T ss_pred CHHHHHHHHHHcCCCeEEeC
Confidence 48999999999999999988
No 175
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.61 E-value=3.6e+02 Score=22.67 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCChhhh
Q 010043 479 ARICSIIRKSGKDIEEL 495 (519)
Q Consensus 479 aR~~silrka~~~~~~~ 495 (519)
..+++++++.|.+++++
T Consensus 48 ~~I~~llr~~G~~l~~i 64 (99)
T cd04765 48 LLIKHLLYEKGYTIEGA 64 (99)
T ss_pred HHHHHHHHHCCCCHHHH
Confidence 55666678888876554
No 176
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=20.51 E-value=1.6e+02 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCC-CCCCeeeEEEecCcE
Q 010043 70 QPVGQAIMKNLP-PSEMIESCSVAGPGF 96 (519)
Q Consensus 70 ~~iA~~i~~~l~-~~~~v~~i~vagpGf 96 (519)
.+|++.|.+.+- ..+.+..|-++||||
T Consensus 57 ~~i~~~l~~~f~~~~~~~~~iIiaGPGf 84 (133)
T PF03464_consen 57 KEIAEALKKYFLVNFDDVKCIIIAGPGF 84 (133)
T ss_dssp HHHHHHHHHHCCCHTTTCSEEEEEESTT
T ss_pred HHHHHHHHHHhhhccccccEEEEECCHH
Confidence 688888888832 224578899999994
No 177
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=20.34 E-value=1.2e+02 Score=27.38 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEe
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~ 172 (519)
..|++|+| -.|+.+.|.-++++|...|..|+...
T Consensus 26 ~~gk~v~V--------------vGrs~~vG~pla~lL~~~gatV~~~~ 59 (140)
T cd05212 26 LDGKKVLV--------------VGRSGIVGAPLQCLLQRDGATVYSCD 59 (140)
T ss_pred CCCCEEEE--------------ECCCchHHHHHHHHHHHCCCEEEEeC
Confidence 46889998 67999999999999999999998875
Done!