Query 010043
Match_columns 519
No_of_seqs 191 out of 1887
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 2E-101 6E-106 848.7 42.1 484 10-515 30-532 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 5.8E-98 2E-102 825.7 42.2 484 10-514 4-553 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 7.1E-90 2.4E-94 758.4 45.5 464 11-514 2-509 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 4.5E-79 1.5E-83 651.0 37.8 359 99-514 1-380 (464)
5 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.7E-35 5.8E-40 316.4 24.2 264 126-489 19-327 (461)
6 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.3E-32 4.4E-37 300.2 19.9 271 126-489 23-392 (536)
7 3tqo_A Cysteinyl-tRNA syntheta 100.0 6.9E-31 2.4E-35 278.8 25.4 249 126-466 22-315 (462)
8 3kfl_A Methionyl-tRNA syntheta 100.0 6.5E-32 2.2E-36 296.1 17.3 270 125-487 23-408 (564)
9 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.4E-30 4.7E-35 275.3 24.8 250 127-466 37-338 (414)
10 2csx_A Methionyl-tRNA syntheta 100.0 4.5E-31 1.5E-35 285.6 15.4 270 127-488 4-365 (497)
11 3sp1_A Cysteinyl-tRNA syntheta 100.0 9.9E-30 3.4E-34 271.2 23.3 260 129-466 42-346 (501)
12 2d5b_A Methionyl-tRNA syntheta 100.0 2.7E-30 9.2E-35 279.6 17.5 270 127-488 2-367 (500)
13 3h99_A Methionyl-tRNA syntheta 100.0 2.6E-29 8.8E-34 275.5 19.1 274 125-488 15-416 (560)
14 2x1l_A Methionyl-tRNA syntheta 100.0 1.2E-28 4E-33 268.3 16.6 271 125-488 9-380 (524)
15 2o5r_A Glutamyl-tRNA synthetas 99.9 1.5E-26 5.2E-31 247.5 18.5 292 127-469 10-335 (481)
16 3al0_C Glutamyl-tRNA(Gln) amid 99.9 4.3E-26 1.5E-30 249.0 14.0 269 102-468 104-430 (592)
17 1irx_A Lysyl-tRNA synthetase; 99.9 1.4E-25 4.7E-30 243.8 9.2 243 136-464 27-324 (523)
18 1rqg_A Methionyl-tRNA syntheta 99.9 5.1E-24 1.8E-28 239.2 19.7 270 128-488 2-414 (722)
19 3afh_A Glutamyl-tRNA synthetas 99.9 1.9E-22 6.3E-27 215.7 17.9 245 128-468 24-326 (488)
20 3u1f_A Methionyl-tRNA syntheta 99.9 2.2E-21 7.6E-26 211.7 20.0 247 126-465 7-369 (542)
21 1wkb_A Leucyl-tRNA synthetase; 99.9 1.1E-20 3.9E-25 215.2 25.3 139 127-294 33-178 (810)
22 1nzj_A Hypothetical protein YA 99.9 5.8E-22 2E-26 199.8 12.4 233 134-456 9-288 (298)
23 3gdz_A Arginyl-tRNA synthetase 99.8 1.2E-20 4.2E-25 162.5 12.4 103 7-117 3-106 (109)
24 4g6z_A Glutamate-tRNA ligase; 99.8 1.3E-19 4.5E-24 192.9 20.3 247 127-468 23-335 (490)
25 1gax_A Valrs, valyl-tRNA synth 99.8 8.4E-19 2.9E-23 199.7 25.8 156 102-295 8-169 (862)
26 1ffy_A Isoleucyl-tRNA syntheta 99.8 4.1E-19 1.4E-23 203.8 20.1 127 127-294 47-178 (917)
27 2cfo_A Glutamyl-tRNA synthetas 99.8 2.6E-19 9E-24 191.7 17.1 243 135-468 6-320 (492)
28 1ile_A Ilers, isoleucyl-tRNA s 99.8 3.7E-19 1.3E-23 202.8 16.8 133 126-294 36-173 (821)
29 1j09_A Glutamyl-tRNA synthetas 99.8 1E-18 3.5E-23 186.1 18.3 139 308-467 174-314 (468)
30 2ja2_A Glutamyl-tRNA synthetas 99.8 9.2E-19 3.1E-23 187.3 16.9 137 308-468 183-329 (498)
31 4gri_A Glutamate--tRNA ligase; 99.8 9.5E-19 3.3E-23 188.9 14.5 137 308-468 204-345 (512)
32 2v0c_A Aminoacyl-tRNA syntheta 99.8 2.9E-17 9.9E-22 187.7 24.9 114 128-294 33-151 (878)
33 4arc_A Leucine--tRNA ligase; l 99.8 2.4E-17 8.4E-22 187.4 23.6 140 102-294 26-171 (880)
34 3aii_A Glutamyl-tRNA synthetas 99.7 5.6E-17 1.9E-21 174.1 12.2 227 128-466 95-392 (553)
35 1wz2_A Leucyl-tRNA synthetase; 99.6 1.8E-14 6.1E-19 166.7 25.0 138 128-294 34-178 (967)
36 1qtq_A GLNRS, protein (glutami 99.6 2.2E-14 7.4E-19 154.2 17.3 264 104-467 9-355 (553)
37 2hz7_A Glutaminyl-tRNA synthet 99.6 2.3E-14 8E-19 160.1 16.0 217 103-410 48-341 (851)
38 2cyb_A Tyrosyl-tRNA synthetase 98.2 9.2E-07 3.1E-11 90.0 6.3 64 335-408 168-231 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 98.1 6.4E-06 2.2E-10 86.0 9.5 64 335-408 180-245 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 97.9 1E-05 3.5E-10 83.8 7.2 61 335-405 176-237 (372)
41 2cya_A Tyrosyl-tRNA synthetase 97.5 0.00017 5.7E-09 74.4 7.6 61 335-405 175-253 (364)
42 2zp1_A Tyrosyl-tRNA synthetase 97.3 0.00056 1.9E-08 69.1 8.6 61 335-409 161-222 (314)
43 3p0j_A Tyrosyl-tRNA synthetase 97.0 0.0018 6E-08 72.0 9.7 64 336-408 182-248 (690)
44 3a04_A Tryptophanyl-tRNA synth 96.4 0.0013 4.5E-08 67.9 3.0 62 340-405 209-271 (372)
45 2pid_A Tyrosyl-tRNA synthetase 95.1 0.01 3.6E-07 60.7 3.2 59 336-404 209-267 (356)
46 2yxn_A Tyrosyl-tRNA synthetase 94.5 0.016 5.3E-07 58.6 2.7 58 337-404 191-248 (322)
47 2jan_A Tyrosyl-tRNA synthetase 94.4 0.024 8E-07 59.5 3.9 59 336-404 186-245 (432)
48 1jil_A Tyrrs, tyrosyl-tRNA syn 93.9 0.028 9.6E-07 58.8 3.4 59 336-404 185-244 (420)
49 1h3f_A Tyrosyl-tRNA synthetase 93.9 0.037 1.3E-06 58.1 4.2 59 336-404 186-245 (432)
50 2ip1_A Tryptophanyl-tRNA synth 93.9 0.077 2.6E-06 55.7 6.6 62 337-408 249-313 (432)
51 2ts1_A Tyrosyl-tRNA synthetase 93.9 0.024 8.3E-07 59.2 2.7 59 336-404 184-243 (419)
52 2g36_A Tryptophanyl-tRNA synth 93.6 0.016 5.6E-07 58.9 0.8 65 335-404 151-218 (340)
53 2el7_A Tryptophanyl-tRNA synth 93.2 0.027 9.2E-07 57.2 1.7 63 335-405 139-209 (337)
54 3tzl_A Tryptophanyl-tRNA synth 92.6 0.025 8.5E-07 57.1 0.4 67 335-404 137-205 (322)
55 1y42_X Tyrosyl-tRNA synthetase 92.1 0.043 1.5E-06 56.9 1.5 65 336-404 231-306 (392)
56 1r6t_A Tryptophanyl-tRNA synth 92.1 0.12 3.9E-06 55.0 4.8 57 345-409 309-368 (477)
57 1yi8_B Tryptophanyl-tRNA synth 92.1 0.042 1.4E-06 56.1 1.4 70 335-407 160-231 (351)
58 3vgj_A Tyrosyl-tRNA synthetase 91.4 0.097 3.3E-06 53.8 3.3 65 335-408 198-265 (373)
59 3i05_A Tryptophanyl-tRNA synth 90.8 0.074 2.5E-06 55.1 1.6 59 343-409 228-288 (395)
60 1r6u_A Tryptophanyl-tRNA synth 90.6 0.06 2E-06 56.5 0.8 57 345-409 262-321 (437)
61 2yy5_A Tryptophanyl-tRNA synth 90.6 0.056 1.9E-06 55.1 0.6 67 335-409 145-223 (348)
62 3hv0_A Tryptophanyl-tRNA synth 90.5 0.066 2.3E-06 55.5 0.9 58 344-409 225-285 (393)
63 2j5b_A Tyrosyl-tRNA synthetase 90.4 0.1 3.4E-06 53.2 2.1 63 337-409 186-251 (348)
64 3jxe_A Tryptophanyl-tRNA synth 90.2 0.079 2.7E-06 54.8 1.2 62 338-409 208-272 (392)
65 3tze_A Tryptophanyl-tRNA synth 90.0 0.16 5.5E-06 52.7 3.4 59 342-408 246-307 (406)
66 3hzr_A Tryptophanyl-tRNA synth 89.7 0.14 4.9E-06 52.7 2.7 56 345-408 230-287 (386)
67 1i6k_A TRPRS, tryptophanyl-tRN 89.1 0.14 4.9E-06 51.6 2.1 72 335-409 135-213 (328)
68 3foc_A Tryptophanyl-tRNA synth 85.6 0.19 6.5E-06 52.8 0.6 57 344-408 292-351 (451)
69 2cyc_A Tyrosyl-tRNA synthetase 83.9 0.32 1.1E-05 49.9 1.5 67 335-405 178-266 (375)
70 2el7_A Tryptophanyl-tRNA synth 83.5 0.34 1.2E-05 49.0 1.4 39 134-177 5-44 (337)
71 3hzr_A Tryptophanyl-tRNA synth 80.7 1.1 3.7E-05 46.2 3.9 45 127-178 80-125 (386)
72 2g36_A Tryptophanyl-tRNA synth 80.5 0.81 2.8E-05 46.3 2.9 39 134-177 16-54 (340)
73 2ts1_A Tyrosyl-tRNA synthetase 77.1 1.6 5.4E-05 45.4 3.9 41 130-177 31-72 (419)
74 1i6k_A TRPRS, tryptophanyl-tRN 76.8 0.79 2.7E-05 46.2 1.5 38 134-177 5-42 (328)
75 3prh_A Tryptophanyl-tRNA synth 75.9 0.49 1.7E-05 48.8 -0.4 72 335-408 169-246 (388)
76 1y42_X Tyrosyl-tRNA synthetase 75.5 1.6 5.3E-05 45.1 3.3 38 134-177 68-106 (392)
77 1jil_A Tyrrs, tyrosyl-tRNA syn 75.1 1.7 5.7E-05 45.3 3.4 42 129-177 32-74 (420)
78 2yxn_A Tyrosyl-tRNA synthetase 74.4 1.8 6.3E-05 43.3 3.4 38 134-177 37-75 (322)
79 3n9i_A Tryptophanyl-tRNA synth 72.0 0.68 2.3E-05 47.0 -0.4 72 335-408 150-227 (346)
80 1h3f_A Tyrosyl-tRNA synthetase 70.3 3.1 0.00011 43.4 4.1 45 130-181 38-83 (432)
81 1yi8_B Tryptophanyl-tRNA synth 69.9 1.2 4.2E-05 45.2 0.9 41 129-178 22-64 (351)
82 3vgj_A Tyrosyl-tRNA synthetase 69.9 2.9 0.0001 42.7 3.8 39 134-177 60-98 (373)
83 3sz3_A Tryptophanyl-tRNA synth 68.8 0.7 2.4E-05 46.8 -1.2 73 335-409 141-222 (341)
84 2pid_A Tyrosyl-tRNA synthetase 68.6 3.3 0.00011 42.0 3.8 42 129-177 46-88 (356)
85 3tzl_A Tryptophanyl-tRNA synth 67.1 1.3 4.4E-05 44.4 0.4 38 134-177 7-44 (322)
86 3jxe_A Tryptophanyl-tRNA synth 64.0 4.1 0.00014 41.9 3.4 42 129-177 73-115 (392)
87 1r6t_A Tryptophanyl-tRNA synth 62.8 5.9 0.0002 41.8 4.5 44 127-177 153-198 (477)
88 2j5b_A Tyrosyl-tRNA synthetase 61.6 6 0.0002 40.0 4.1 42 130-177 41-82 (348)
89 2yy5_A Tryptophanyl-tRNA synth 60.5 2.1 7.2E-05 43.4 0.5 38 134-177 8-45 (348)
90 2jan_A Tyrosyl-tRNA synthetase 59.9 6.4 0.00022 41.0 4.0 41 130-177 33-74 (432)
91 3i05_A Tryptophanyl-tRNA synth 59.8 5.5 0.00019 41.0 3.5 45 127-177 76-121 (395)
92 1r6u_A Tryptophanyl-tRNA synth 59.3 6.6 0.00023 41.0 4.0 44 127-177 106-151 (437)
93 2ip1_A Tryptophanyl-tRNA synth 56.7 7.2 0.00025 40.6 3.8 41 130-177 103-145 (432)
94 3foc_A Tryptophanyl-tRNA synth 56.0 6.9 0.00024 41.0 3.5 44 128-178 90-135 (451)
95 3tze_A Tryptophanyl-tRNA synth 53.9 8.2 0.00028 39.9 3.6 44 127-177 99-144 (406)
96 3hv0_A Tryptophanyl-tRNA synth 53.3 6.9 0.00024 40.2 2.9 44 129-179 74-119 (393)
97 3sz3_A Tryptophanyl-tRNA synth 50.1 4 0.00014 41.2 0.6 38 134-177 10-47 (341)
98 2cyc_A Tyrosyl-tRNA synthetase 46.9 3.8 0.00013 41.9 -0.3 39 134-177 37-75 (375)
99 3prh_A Tryptophanyl-tRNA synth 46.4 5.6 0.00019 40.9 0.9 38 134-177 39-76 (388)
100 1iio_A Conserved hypothetical 36.2 14 0.00047 29.3 1.5 71 6-79 4-81 (84)
101 3n9i_A Tryptophanyl-tRNA synth 27.8 16 0.00056 36.7 0.9 38 134-177 19-56 (346)
102 3r6u_A Choline-binding protein 23.1 50 0.0017 32.0 3.3 41 141-181 12-56 (284)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=1.6e-101 Score=848.72 Aligned_cols=484 Identities=29% Similarity=0.449 Sum_probs=415.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC-CCcccccc-cCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCee
Q 010043 10 NVKRELEKVFDLALKATVPNET-DVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIE 87 (519)
Q Consensus 10 ~~~~~~~~~~~~al~~~~~~~~-~~~~~i~~-~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~ 87 (519)
++.+.+++.|.+++...+.... .....+++ ++++||||+||+|| +|.+| ++|++||++|+++|+.++.|+
T Consensus 30 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i~ 101 (607)
T 1f7u_A 30 NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFLE 101 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHH--HHhcC------CCHHHHHHHHHHhccccCcee
Confidence 5666777777777766532111 12234554 46799999998776 37777 999999999999998778899
Q ss_pred eEEEecCcEEEEEeChhHHHHHHH-HHHHcCCCCC-CccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCC
Q 010043 88 SCSVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (519)
Q Consensus 88 ~i~vagpGfIN~~l~~~~~~~~l~-~~~~~~~~~~-~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G 165 (519)
+++++|| ||||+|++++|.+.+. .++..+..++ .+.+++++|+||||||||+|||||||+|++|+||+|||+|+++|
T Consensus 102 ~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G 180 (607)
T 1f7u_A 102 KVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG 180 (607)
T ss_dssp EEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcC
Confidence 9999996 9999999999997554 5555555433 33467899999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCC-------hHHHHHHHHHHHHHccCC
Q 010043 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGE 238 (519)
Q Consensus 166 ~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~~~~~~~~~e~gd 238 (519)
|+|+++|||||||+||++|+.+ +.++++.......++.++.++|+++++.++++ +.+.++|++.+++||+||
T Consensus 181 ~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd 259 (607)
T 1f7u_A 181 WEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD 259 (607)
T ss_dssp CEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTC
T ss_pred CCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999977 45555432223457888999999999999888 889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecccccc-CcHHHHHHHHHHCCCeEeecCeEEEEec--CCCCC-eEEE
Q 010043 239 PKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LIIV 313 (519)
Q Consensus 239 ~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es~~~-~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d-~Vl~ 313 (519)
+++.++|+++++++++.|+++|++|||+|| |.+||.|. +.++++++.|+++|++|+++|++||+++ |++.| +|++
T Consensus 260 ~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~~ 339 (607)
T 1f7u_A 260 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQ 339 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeEe
Confidence 999999999999999999999999999996 78999887 7899999999999999999999999998 44555 8999
Q ss_pred cCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccee
Q 010043 314 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 393 (519)
Q Consensus 314 ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmS 393 (519)
||||+++|.|+|||+|+||+..+++|++|||||++|+.||+|++++++++|+. ++..|+|++||+|. +||
T Consensus 340 KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~-----kMS 409 (607)
T 1f7u_A 340 KSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMS 409 (607)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCC
T ss_pred ccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-----ccc
Confidence 99999999999999999999778999999999999999999999999999993 45679999999996 399
Q ss_pred eecCCcccHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchh
Q 010043 394 TRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEW-TEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV 472 (519)
Q Consensus 394 kR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~-~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~ 472 (519)
||+|++|+|+||++++..+|.+.+.++ +. .+ ..+++.++|++||++|||||+|+.+++++++|||+++++++|||||
T Consensus 410 kR~G~~v~L~dLlde~~~~a~~~~~~~-~~-~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~p 487 (607)
T 1f7u_A 410 TRKGTVVFLDNILEETKEKMHEVMKKN-EN-KYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP 487 (607)
T ss_dssp GGGTCCCBHHHHHHHHHHHHHHHHHTC-HH-HHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhC-cc-cccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchH
Confidence 999999999999999999887766521 10 01 1357889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCChhhhhhcC-CCCCCHHhHHHHhhcc
Q 010043 473 YLLYAHARICSIIRKS-GKDIEELKKVG-LVFEVEALTMFQRLSF 515 (519)
Q Consensus 473 YiqYa~aR~~silrka-~~~~~~~~~~~-~~l~~~~e~~l~~~~~ 515 (519)
||||||||+|||+||+ +.+...+...+ ..|.+|+|++|++...
T Consensus 488 ylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~ 532 (607)
T 1f7u_A 488 YLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLG 532 (607)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHH
Confidence 9999999999999999 55543333344 5688999999998653
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=5.8e-98 Score=825.68 Aligned_cols=484 Identities=23% Similarity=0.320 Sum_probs=415.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCC--CCCe
Q 010043 10 NVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPP--SEMI 86 (519)
Q Consensus 10 ~~~~~~~~~~~~al~~~~~~~~~~~~~i~~-~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~--~~~v 86 (519)
++++.|++.|.+++...... ......+++ ++++|||||||+||.|||.+| ++|++||++|+++|+. ++.|
T Consensus 4 ~~~~~i~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~~~i 76 (629)
T 2zue_A 4 EIRESVKERIEEIIKEIAPQ-WEGEIELKETPDPKLGDFGTPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEGI 76 (629)
T ss_dssp TTHHHHHHHHHHHHHHHCTT-CCCCCCCEECSSGGGCSEEECHHHHHHHHHT------SCHHHHHHHHHHHHTTSCCTTE
T ss_pred HHHHHHHHHHHHHHHhcCcc-ccccceeeCCCCCCCCceeHHHHHHHHHHcC------CCHHHHHHHHHHHhhhccCCCe
Confidence 46777888888888765321 112223554 477999999999999999999 9999999999999976 6789
Q ss_pred eeEEEecCcEEEEEeChhHHHHHH-HHHHHcCCCCC-CccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHC
Q 010043 87 ESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 164 (519)
Q Consensus 87 ~~i~vagpGfIN~~l~~~~~~~~l-~~~~~~~~~~~-~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~ 164 (519)
++++++| |||||+|+++++...+ ..++..+..++ .+.+++++|+||||||||+|||||||+|++|+||+|||+|+++
T Consensus 77 ~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~ 155 (629)
T 2zue_A 77 KDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp EEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 9999999 9999999999655554 55666655433 3446789999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCcchHHHHHHHHHHhhCCCCCcc----------ccccH-HHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 010043 165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA----------NETAI-GELQEFYRRSKNRFDSDPAFKERAQQAVVR 233 (519)
Q Consensus 165 G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~----------~~~~i-~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 233 (519)
||+|.++|||||||+||++++.+..+ ++..... +++++ ..+.+.|+++.+.++.+|+|.+++++.+.+
T Consensus 156 G~~V~~~~~i~D~G~Q~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~ 234 (629)
T 2zue_A 156 GYEVEVQNYIDDLGIQFAQVYWGYLR-LKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKK 234 (629)
T ss_dssp TCEEEEEEEECTTSHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCceEEecccchhHHHHHHHHHHHH-hCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 99999999999999999999865432 2211000 23455 456788999998888899999999999999
Q ss_pred HccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccc--cCcHHHHHHHHHHCCCeE-----eecCeEEEEec-
Q 010043 234 LQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE- 304 (519)
Q Consensus 234 ~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es~~--~~~v~~vi~~L~~~g~~~-----~~dGa~~~~~~- 304 (519)
+|+|| .+|+.+++.++..|+++|++|||+|| |.+||.| .+.++++++.|+++|++| +.+|++||+++
T Consensus 235 ~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~ 310 (629)
T 2zue_A 235 LESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRK 310 (629)
T ss_dssp HHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTT
T ss_pred ccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcc
Confidence 99998 79999999999999999999999996 7789888 889999999999999999 88999999998
Q ss_pred -CCCCC---eEEEcCCCCccccchhHHHHHhh---------hhhc-------------------CCCeEEEEecCCcccc
Q 010043 305 -GVNIP---LIIVKSDGGFNYASTDLAALWYR---------LNEE-------------------KAEWIIYVTDVGQQLH 352 (519)
Q Consensus 305 -g~~~d---~Vl~ksDG~~tY~t~DiA~~~~r---------~~~~-------------------~~d~~I~V~g~~q~~h 352 (519)
|++++ +|++||||++||+++|+|||.|| ...+ ++|++|||||++|+.|
T Consensus 311 ~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~ 390 (629)
T 2zue_A 311 LFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHP 390 (629)
T ss_dssp TCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHH
T ss_pred cCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhH
Confidence 55666 89999999999999999999994 5444 8999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCcEEEEEeEEEEcCCCcceeeecC--CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010043 353 FDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGKRLRTRFS--EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (519)
Q Consensus 353 f~~~~~i~~~lg~~~~~~~~-~~~~~Hv~~g~V~~~~g~kmSkR~G--~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~ 429 (519)
|++++++++++|+. + +..+.|+.||||+.+ |+|||||+| |+|+++||++++.++|++.+.++++ +++++
T Consensus 391 ~~~l~~~l~~lG~~-----~~~~~~~h~~~g~V~~~-~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~--~~~~~ 462 (629)
T 2zue_A 391 QLAIKYALQLLGFE-----DAAANLYHLAYEHVERP-EGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP--ALSDE 462 (629)
T ss_dssp HHHHHHHHHHTTCH-----HHHHTEEEEEECCEEBT-TBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT--TSCHH
T ss_pred HHHHHHHHHHcCCC-----CCCCeEEEEEeeeEEcC-CCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc--ccchh
Confidence 99999999999994 3 347999999999975 667999999 9999999999999999999998854 58999
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCCCh-----hh-hhhcCCCCC
Q 010043 430 ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDI-----EE-LKKVGLVFE 503 (519)
Q Consensus 430 e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~silrka~~~~-----~~-~~~~~~~l~ 503 (519)
+.+++|+++|++|+|||+|+.+++++++|||+.+++++|||+|||||||||+|||+||++... .. ....+..|.
T Consensus 463 ~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~ 542 (629)
T 2zue_A 463 EKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKL 542 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSC
T ss_pred hHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999985432 11 112234577
Q ss_pred CHHhHHHHhhc
Q 010043 504 VEALTMFQRLS 514 (519)
Q Consensus 504 ~~~e~~l~~~~ 514 (519)
+++|++|++..
T Consensus 543 ~~~e~~L~~~l 553 (629)
T 2zue_A 543 SERERELVIML 553 (629)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998754
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=7.1e-90 Score=758.39 Aligned_cols=464 Identities=25% Similarity=0.318 Sum_probs=393.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeE
Q 010043 11 VKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 89 (519)
Q Consensus 11 ~~~~~~~~~~~al~~~~~~~~~~~~~i~~-~~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~v~~i 89 (519)
+++.|++.|.+++..... +....+++ ++++|||||||+ |.|||.+| ++|++||++|+++|+.++.|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~gD~~~~~-~~lak~~~------~~P~~iA~~i~~~l~~~~~~~~~ 71 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV---PVRLKVARAPKDKPGDYGVPL-FALAKELR------KPPQAIAQELKDRLPLPEFVEEA 71 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC---CCCCCCEECSTTSSCSEEEEC-SHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEE
T ss_pred hHHHHHHHHHHHHHhcCC---CccceeeCCCCCCCCcchhhH-HHHHHHcC------CCHHHHHHHHHHhccccCcEEEE
Confidence 566778888888876422 12233554 478999999995 99999999 99999999999999877789999
Q ss_pred EEecCcEEEEEeChhHHHHHHHH-HHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeE
Q 010043 90 SVAGPGFVNVVLSKNWMAKNIQK-MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 168 (519)
Q Consensus 90 ~vagpGfIN~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V 168 (519)
+++| |||||+|+++++...+.. ++..+..+ | +|+||||||||+||+||||+|++|+||+|||+|+++||+|
T Consensus 72 ~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~------g-~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V 143 (592)
T 1iq0_A 72 VPVG-GYLNFRLRTEALLREALRPKAPFPRRP------G-VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREV 143 (592)
T ss_dssp EEET-TEEEEEECHHHHHHHHHSCCCCCCCEE------E-EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEcC-CEEEEEECHHHHHHHHHHHHHhcCccc------C-eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCce
Confidence 9999 999999999977776643 22222221 1 8999999999999999999999999999999999999999
Q ss_pred EEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHH
Q 010043 169 LRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (519)
Q Consensus 169 ~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~ 248 (519)
.++|||||||+||++++.+..+ ++........+...+.++|+++++.++.+ ++.+++++.++++|+|+ . +++
T Consensus 144 ~~~~~i~D~G~q~~~li~~~~~-~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~----~~~ 215 (592)
T 1iq0_A 144 LVLNYIDDTGRQAAETLFALRH-YGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L----REE 215 (592)
T ss_dssp EEEEEECTTSHHHHHHHHHHHH-TTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T----HHH
T ss_pred EEEeccCCcchHHHHHHHHHHH-hCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H----HHH
Confidence 9999999999999999876543 44322111134566789999999888877 89999999999999998 1 788
Q ss_pred HHHHHHHHHHHHHHcCCcee-eeccccc--cCcHHHHHHHHHHCCCeE-----eecCeEEEEec--CCCCC---eEEEcC
Q 010043 249 CEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKS 315 (519)
Q Consensus 249 ~~~~~~~~~~~~~~Lgi~fd-~~~es~~--~~~v~~vi~~L~~~g~~~-----~~dGa~~~~~~--g~~~d---~Vl~ks 315 (519)
++.+++.|+++|++|||+|| |.+||.+ .+.++++++.|+++|++| +.+|++||+++ |++++ +|++||
T Consensus 216 ~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~ks 295 (592)
T 1iq0_A 216 VNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRS 295 (592)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCceEEEec
Confidence 99999999999999999996 7789887 889999999999999999 88999999998 55656 899999
Q ss_pred CCCccccchhHHHHHhh--------hhhc--------------------CCCeEEEEecCCccccHHHHHHHHHHcCCCC
Q 010043 316 DGGFNYASTDLAALWYR--------LNEE--------------------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (519)
Q Consensus 316 DG~~tY~t~DiA~~~~r--------~~~~--------------------~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~ 367 (519)
||+++|+++|+|||+|| ...+ ++|++|||||.+|..||++++.+++++|+.
T Consensus 296 dG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~- 374 (592)
T 1iq0_A 296 NGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP- 374 (592)
T ss_dssp TSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCH-
T ss_pred CCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCC-
Confidence 99999999999999994 5434 899999999999999999999999999993
Q ss_pred CCCCC-CCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHH
Q 010043 368 ADDST-YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYF 446 (519)
Q Consensus 368 ~~~~~-~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~ 446 (519)
+ +..+.|++||||++ +|+|||||+||+|+++||++++.++|.+.+.++++ +|+++| ++|+++|++++|||
T Consensus 375 ----~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~--~~~~~e--~~a~~vg~~aiRyf 445 (592)
T 1iq0_A 375 ----ALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP--DHPDKE--EAARMVALGAIRFS 445 (592)
T ss_dssp ----HHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT--TCSCHH--HHHHHHHHHHHHHH
T ss_pred ----CCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC--CCCcHH--HHHHhhcHHHHHHH
Confidence 3 45799999999986 57789999999999999999999999999998854 576655 99999999999999
Q ss_pred hhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCCChhhhhhcCCCCCCHHhHHHHhhc
Q 010043 447 DLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKVGLVFEVEALTMFQRLS 514 (519)
Q Consensus 447 ~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR~~silrka~~~~~~~~~~~~~l~~~~e~~l~~~~ 514 (519)
+|+.++.++++|||++++++++||++||||||+|+|||+||+..+... +..|.+++|++|++..
T Consensus 446 ~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~----~~~l~~~~e~~L~~~l 509 (592)
T 1iq0_A 446 MVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAP----DLSQATPYERALALDL 509 (592)
T ss_dssp HHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCC----CGGGCCHHHHHHHHHH
T ss_pred HHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCC----ccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999653211 2236688899887653
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=4.5e-79 Score=650.97 Aligned_cols=359 Identities=19% Similarity=0.267 Sum_probs=300.9
Q ss_pred EEeChhHHHHHHHHHHHcCCCCC-CccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 99 VVLSKNWMAKNIQKMLVDGIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 99 ~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|+|+++++...+.+++..+..++ .+. ++++|+||||||||||||||||+|++++||+|||+++++||+|.|+||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 68999999999999998766543 334 7899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhC-----CC-----CCccccccHHHHHH-HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHH
Q 010043 178 GTQFGMLIEYLFEKF-----PN-----SEDANETAIGELQE-FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWA 246 (519)
Q Consensus 178 G~Q~~~l~~~~~~~~-----~~-----~~~~~~~~i~~l~~-~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~ 246 (519)
|+||++|+.++..++ ++ ...+.+.++.++++ ++++....+. ++++...+|+
T Consensus 80 G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~~ 141 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLAD 141 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHHH
Confidence 999999987764321 11 12355667776643 3333332221 1445668999
Q ss_pred HHHHHHHHHHHHHHHHcCCcee-eecc-ccccCcHHHHHHHHHHCCCeEeecCeEEEEec--CCCCCeEEEcCCCCcccc
Q 010043 247 QICEISRKEFDKVYKRLRVDLE-EKGE-SFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYA 322 (519)
Q Consensus 247 ~~~~~~~~~~~~~~~~Lgi~fd-~~~e-s~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~ 322 (519)
.++++++++|+++|++|||+|| |.+| |+|. .++++++.|+++|+++++|||+||+++ |+++|+||+||||++||+
T Consensus 142 ~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~ 220 (464)
T 3fnr_A 142 WAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYL 220 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehh
Confidence 9999999999999999999996 8899 6777 999999999999999999999999997 678899999999999999
Q ss_pred chhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE-EcCCCc--ceeeecCCc
Q 010043 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGK--RLRTRFSEV 399 (519)
Q Consensus 323 t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V-~~~~g~--kmSkR~G~~ 399 (519)
|+|||||.+|+ .+++|++|||+|+||+.||++++++++++|+.+ +++.|+.+||| ++++|+ |||||+||+
T Consensus 221 t~DiA~~~~r~-~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~------~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~ 293 (464)
T 3fnr_A 221 AADIVYHKDKM-SRGYGKCINIWGADHHGYIPRMKAAMEFLGFDS------NNLEIILAQMVSLLKDGEPYKMSKRAGNF 293 (464)
T ss_dssp HHHHHHHHHHH-TSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCG------GGEEEEEECCEEEEETTEECCC---CCSS
T ss_pred hHHHHHHHHHH-HcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCc------cceEEEEeeeEEecCCCcccCCcCcCCCC
Confidence 99999999999 568999999999999999999999999999953 47899999999 556785 999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC-CchhHHHHHH
Q 010043 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG-NTAVYLLYAH 478 (519)
Q Consensus 400 v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~g-nt~~YiqYa~ 478 (519)
|+++|++++ +|++++|||+++.++.++++|||++++++.+ |+++|+||||
T Consensus 294 v~l~dll~~-----------------------------~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~ 344 (464)
T 3fnr_A 294 ILMSDVVDE-----------------------------IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAH 344 (464)
T ss_dssp CBHHHHHHH-----------------------------HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHH
T ss_pred CCHHHHHhh-----------------------------ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHH
Confidence 999999998 6999999999999999999999999999854 5555999999
Q ss_pred HHHHHHHHHhCCChhhhhhcC-CCCCCHHhHHHHhhc
Q 010043 479 ARICSIIRKSGKDIEELKKVG-LVFEVEALTMFQRLS 514 (519)
Q Consensus 479 aR~~silrka~~~~~~~~~~~-~~l~~~~e~~l~~~~ 514 (519)
+|+|||+||++.+...+...+ ..|.++ |++|++..
T Consensus 345 aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L 380 (464)
T 3fnr_A 345 ARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEA 380 (464)
T ss_dssp HHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHH
T ss_pred HHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHH
Confidence 999999999975422221233 467777 88887653
No 5
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.7e-35 Score=316.43 Aligned_cols=264 Identities=14% Similarity=0.185 Sum_probs=209.3
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|..+++++|+|..+-.
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~---------------------- 76 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIK---------------------- 76 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHH----------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHH----------------------
Confidence 4678999999999999999999999999999999999999999999999999853321
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eee-ccccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~-~es~~~~~v~~vi 283 (519)
++. +.|. .|+++++.+.+.|+++|++|||.+ |++ .+|.|.+.+.+++
T Consensus 77 ------~A~--------------------~~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i 125 (461)
T 1li5_A 77 ------RAN--------------------ENGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELT 125 (461)
T ss_dssp ------HHH--------------------HTTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHH
T ss_pred ------HHH--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHH
Confidence 111 1122 267889999999999999999998 654 4577888899999
Q ss_pred HHHHHCCCeEee-cCeEEEEec---------C-------------------CCCCeEEEcC--CCCccccchh-------
Q 010043 284 DELSKQGLVEES-QGARVIFIE---------G-------------------VNIPLIIVKS--DGGFNYASTD------- 325 (519)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~---------g-------------------~~~d~Vl~ks--DG~~tY~t~D------- 325 (519)
++|.++|++|+. +|++||.++ | +..|++++|+ +|.++|.+++
T Consensus 126 ~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgW 205 (461)
T 1li5_A 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205 (461)
T ss_dssp HHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECS
T ss_pred HHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCc
Confidence 999999999999 999999753 1 0147899986 7999887742
Q ss_pred -HH--HHHhhhhhcCCCeEEEEecCCcc-ccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcc
Q 010043 326 -LA--ALWYRLNEEKAEWIIYVTDVGQQ-LHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (519)
Q Consensus 326 -iA--~~~~r~~~~~~d~~I~V~g~~q~-~hf~~~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 400 (519)
++ ...+++ ++....|++.|.|+. .|.....+.+.+ +|+ +++..|.|. |+|+. +|+|||||+||+|
T Consensus 206 hiecsam~~~~--lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-----~~~~~~~h~--g~v~~-~G~KMSKS~GN~v 275 (461)
T 1li5_A 206 HIECSAMNCKQ--LGNHFDIHGGGSDLMFPHHENEIAQSTCAHDG-----QYVNYWMHS--GMVMV-DREKMSKSLGNFF 275 (461)
T ss_dssp SHHHHHHHHHH--HCSSEEEEECBGGGTTTHHHHHHHHHHHHSSS-----CCEEEECCB--CCEEE-TTBCCCGGGTCCC
T ss_pred cchhHHHHHHH--hCCCceEEeccCccCchHHHHHHHHHHHhcCC-----CCCcEEEEe--eEEEE-CCeEccccCCCcc
Confidence 12 122232 455666777788854 244333333444 476 345678887 55664 6899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHH
Q 010043 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHAR 480 (519)
Q Consensus 401 ~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gnt~~YiqYa~aR 480 (519)
++.|++++ +|++++||++|+.+++++++|+++.+.+. ++++.|
T Consensus 276 ~~~dll~~-----------------------------~g~dalR~~ll~~~~~~~~~fs~~~l~~~--------~~~l~r 318 (461)
T 1li5_A 276 TVRDVLKY-----------------------------YDAETVRYFLMSGHYRSQLNYSEENLKQA--------RAALER 318 (461)
T ss_dssp BHHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECHHHHHHH--------HHHHHH
T ss_pred ChhHHhhh-----------------------------CCHHHHHHHHHcCCcCCCCCCCHHHHHHH--------HHHHHH
Confidence 99999986 69999999999999999999999998776 788999
Q ss_pred HHHHHHHhC
Q 010043 481 ICSIIRKSG 489 (519)
Q Consensus 481 ~~silrka~ 489 (519)
+++++++++
T Consensus 319 l~n~~~~~~ 327 (461)
T 1li5_A 319 LYTALRGTD 327 (461)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHhh
Confidence 999998764
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.3e-32 Score=300.22 Aligned_cols=271 Identities=13% Similarity=0.118 Sum_probs=193.5
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
+++++.|....|+|+|++||||+|++++||+|+|+++++||+|.++++++|+|.++...+... +
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~-----------g----- 86 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE-----------G----- 86 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-----------T-----
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc-----------C-----
Confidence 345899999999999999999999999999999999999999999999999999876443210 0
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecc--ccccCcHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGV 282 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~e--s~~~~~v~~v 282 (519)
.+ ++++++.+.+.|++++++|||.+| +..+ ..|.+.++++
T Consensus 87 -------------~~------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~ 129 (536)
T 4dlp_A 87 -------------IT------------------------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAI 129 (536)
T ss_dssp -------------SC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred -------------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHH
Confidence 01 234678888999999999999996 4333 3477889999
Q ss_pred HHHHHHCCCeEeecCeEEEEec------------C---------------------------------------------
Q 010043 283 IDELSKQGLVEESQGARVIFIE------------G--------------------------------------------- 305 (519)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~~~~------------g--------------------------------------------- 305 (519)
+++|.++|++|+.++.+|+... |
T Consensus 130 ~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P 209 (536)
T 4dlp_A 130 WQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMP 209 (536)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEES
T ss_pred HHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCc
Confidence 9999999999998877765321 0
Q ss_pred -------------CCCCeEEEcCC-------------CCccccchhHHHHH---h-----hhh-hcCCCeEEEEecCCcc
Q 010043 306 -------------VNIPLIIVKSD-------------GGFNYASTDLAALW---Y-----RLN-EEKAEWIIYVTDVGQQ 350 (519)
Q Consensus 306 -------------~~~d~Vl~ksD-------------G~~tY~t~DiA~~~---~-----r~~-~~~~d~~I~V~g~~q~ 350 (519)
...|..|.|++ ..++|+..+++|.- | ++. .|..| ++++|.||.
T Consensus 210 ~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~d--v~~~G~D~~ 287 (536)
T 4dlp_A 210 AERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPAN--AHIIGKDIS 287 (536)
T ss_dssp HHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCS--EEEEEGGGH
T ss_pred HHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcc--eEEeechHH
Confidence 11455666652 22344445555521 1 121 24455 889999997
Q ss_pred ccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 010043 351 LHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTE 428 (519)
Q Consensus 351 ~hf~~~~--~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~ 428 (519)
. |..++ ..+.++|+.+ . ..+... |+|+. +|+|||||+||+|++.|++++
T Consensus 288 ~-fh~~~~~a~l~a~g~~~----~-~~v~~h--g~v~~-~G~KMSKS~GNvi~p~d~i~~-------------------- 338 (536)
T 4dlp_A 288 R-FHAVYWPAFLMSAQLPL----P-KRVFAH--GFLFN-RGEKMSKSVGNVIDPFELVER-------------------- 338 (536)
T ss_dssp H-HHHTHHHHHHHHTTCCC----C-SCEEEE--CCEEC-------------CCHHHHHHH--------------------
T ss_pred H-HHHHHHHHHHHHCCCCC----C-cEEEee--eeEee-CCceecccCCCCCCHHHHHHH--------------------
Confidence 6 65554 5567788852 2 233332 67875 899999999999999999998
Q ss_pred HHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcc-cCCchhHHHHHHHHHHHHHHHhC
Q 010043 429 EELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKSG 489 (519)
Q Consensus 429 ~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~~-~gnt~~YiqYa~aR~~silrka~ 489 (519)
+|++++||++++ ....++++||++.+.+. +.+...+++++++|+++++.+..
T Consensus 339 ---------~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~ 392 (536)
T 4dlp_A 339 ---------YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNC 392 (536)
T ss_dssp ---------HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHS
T ss_pred ---------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 699999999999 78899999999999774 44556689999999999998763
No 7
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=6.9e-31 Score=278.79 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=195.5
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
.+++|.+++|+|||++++||||+|++|++|+|+|+|++.||+|..+.+++|+|..+-.-+
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A-------------------- 81 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRA-------------------- 81 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHH--------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHH--------------------
Confidence 467899999999999999999999999999999999999999999999999886543111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-ee-ccccccCcHHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 283 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~-~es~~~~~v~~vi 283 (519)
. +.|. .|+++++.+.+.|++++++|||.++ +. ..+.|.+.+.+++
T Consensus 82 --------~--------------------~~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i 128 (462)
T 3tqo_A 82 --------G--------------------ENKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLI 128 (462)
T ss_dssp --------H--------------------HTTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHH
T ss_pred --------H--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHH
Confidence 0 0111 2667889999999999999999995 33 5677888899999
Q ss_pred HHHHHCCCeEee-cCeEEEEec-----C-----------------------CCCCeEEEcC--CCCccccchh----HHH
Q 010043 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 328 (519)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D----iA~ 328 (519)
++|.++|++|+. +|.+||+++ | +..|++|+|. +|.|.|.+++ .++
T Consensus 129 ~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGW 208 (462)
T 3tqo_A 129 QKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGW 208 (462)
T ss_dssp HHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECH
T ss_pred HHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCC
Confidence 999999999998 799999774 1 1247899985 7888888865 244
Q ss_pred HHhhh----hhcCCCeEEEEecCCccccHH---HHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcc
Q 010043 329 LWYRL----NEEKAEWIIYVTDVGQQLHFD---MVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (519)
Q Consensus 329 ~~~r~----~~~~~d~~I~V~g~~q~~hf~---~~~~i~~~-lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v 400 (519)
|+... ...|.. |+|+|.+++..|+ ...+..++ .|. +++..|.|. |+|. .+|+|||||+||+|
T Consensus 209 HiEcsam~~~~lG~~--~dih~gG~Dl~FpHheneiaqs~a~~g~-----p~~~~w~H~--g~v~-~~G~KMSKSlGN~i 278 (462)
T 3tqo_A 209 HIECSAMSSSILGQP--FDIHGGGLDLKFPHHENEIAQSEAGEEK-----PFVKLWMHA--GLLE-INKEKMSKSLGNII 278 (462)
T ss_dssp HHHHHHHHHHHHCSS--EEEEEEEGGGTTTHHHHHHHHHHHHHSS-----CCEEEEEEE--CCEE-ETTEECCTTTTCCC
T ss_pred ceehHHHHHHhcCCC--eEEEccccccccHHHHhHHHHHHHHcCC-----CcceEEEEc--cEEe-cCCcCccccCCCcc
Confidence 54431 113433 5556666555554 34344443 354 467788997 5676 57999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 401 ~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
++.|++++ +|++++||++|+.+++++++|+++.+.+.
T Consensus 279 ~~~dll~~-----------------------------~g~dalR~~lls~~yr~~l~fs~~~l~~a 315 (462)
T 3tqo_A 279 SIREALKE-----------------------------SDVEVLRYFLLSGHYRNPLSYSKENLENG 315 (462)
T ss_dssp BHHHHHHH-----------------------------SCHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred cHHHHHhh-----------------------------cChHHhhhhhccCCCCCCcCcCHHHHHHH
Confidence 99999987 69999999999999999999999988664
No 8
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.97 E-value=6.5e-32 Score=296.06 Aligned_cols=270 Identities=17% Similarity=0.149 Sum_probs=201.3
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
.+++++.|..++|||||++||||+|++++||++||++|..||+|.++++++|+|.++...+.. .+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-----------~g---- 87 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-----------QG---- 87 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----------TT----
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----------cC----
Confidence 456899999999999999999999999999999999999999999999999999987644321 00
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-c--cccccCcHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPG 281 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-~--es~~~~~v~~ 281 (519)
.+ ++++++.+...|++++++|||.||.+ . +..|.+.+++
T Consensus 88 --------------~~------------------------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (564)
T 3kfl_A 88 --------------VS------------------------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129 (564)
T ss_dssp --------------CC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred --------------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH
Confidence 11 12467888899999999999999743 3 3357788999
Q ss_pred HHHHHHHCCCeEeecCeEEEEec------------C--------------------------------------------
Q 010043 282 VIDELSKQGLVEESQGARVIFIE------------G-------------------------------------------- 305 (519)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~~~~------------g-------------------------------------------- 305 (519)
++++|.++|++|+.++.+|+... |
T Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~ 209 (564)
T 3kfl_A 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 (564)
T ss_dssp HHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC
Confidence 99999999999987655554221 0
Q ss_pred -------------------CCCCeEEEc---CC-----------CCccccchh-----HHHHHh---h---------h--
Q 010043 306 -------------------VNIPLIIVK---SD-----------GGFNYASTD-----LAALWY---R---------L-- 333 (519)
Q Consensus 306 -------------------~~~d~Vl~k---sD-----------G~~tY~t~D-----iA~~~~---r---------~-- 333 (519)
...|..|.| ++ +...|.--| ++...| + +
T Consensus 210 ~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTT
T ss_pred CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchh
Confidence 012333444 11 111222212 222222 1 1
Q ss_pred -hhcCCCeEEEEecCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH
Q 010043 334 -NEEKAEWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (519)
Q Consensus 334 -~~~~~d~~I~V~g~~q~~hf~~~~--~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~ 410 (519)
..|..| ++++|.||.. |..++ +.+.++|+.+ ...+... |+|. .+|+|||||+||+|++.|++++
T Consensus 290 ~~~wp~d--v~~~GkDii~-FH~~~wpa~L~a~g~~~-----~~~v~~h--g~v~-~~G~KMSKS~GNvV~p~d~i~~-- 356 (564)
T 3kfl_A 290 LNRWPAD--VHVVGKDILK-FHAIYWPAFLMSAELPL-----PERLVSH--GWWT-KDHKKISKSLGNAFDPVEKAKE-- 356 (564)
T ss_dssp TTCCSCS--EEEEEGGGHH-HHHTHHHHHHHHTTCCC-----CSCEEEE--CCEE-ETTEECCTTTTCCCCHHHHHHH--
T ss_pred hhcCccc--eEEEeecccc-hHHHHHHHHHHhCCCCC-----CcEEEEc--ccEe-eCCccccccCCCCCCHHHHHHH--
Confidence 123344 8899999976 65554 6677889852 2333333 6784 6899999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhc-ccCCchhHHHHHHHHHHHHHHH
Q 010043 411 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRK 487 (519)
Q Consensus 411 ~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~-~~gnt~~YiqYa~aR~~silrk 487 (519)
+|++++||++++ ....++++||++.+.+ .+++...+|+|+++|+++++.+
T Consensus 357 ---------------------------~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~ 408 (564)
T 3kfl_A 357 ---------------------------FGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN 408 (564)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTS
T ss_pred ---------------------------cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999 7889999999999987 5778888999999999999873
No 9
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.97 E-value=1.4e-30 Score=275.31 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=176.8
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
+++|.++.|+|||+|++||||+|++++||+|+|+|+..||+|..+++++|+|..+-..+.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~-------------------- 96 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAE-------------------- 96 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHH--------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHH--------------------
Confidence 567999999999999999999999999999999999999999999999999865432211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCc-ee-eeccccccCcHHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LE-EKGESFYNPYIPGVID 284 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-fd-~~~es~~~~~v~~vi~ 284 (519)
+ .|. .|+++++.+.+.|++++++|||. +| +.+++.|.+.++++++
T Consensus 97 ----------------------~------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~ 143 (414)
T 3c8z_A 97 ----------------------R------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVE 143 (414)
T ss_dssp ----------------------H------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHH
T ss_pred ----------------------H------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHH
Confidence 0 011 24567888999999999999999 87 4456667778999999
Q ss_pred HHHHCCCeEeec----CeEEEEecC-----C----C-----------------------CCeEEEc--CCCCccccchh-
Q 010043 285 ELSKQGLVEESQ----GARVIFIEG-----V----N-----------------------IPLIIVK--SDGGFNYASTD- 325 (519)
Q Consensus 285 ~L~~~g~~~~~d----Ga~~~~~~g-----~----~-----------------------~d~Vl~k--sDG~~tY~t~D- 325 (519)
+|.++|++|+.+ |++||+++. . + .|++++| ..|.+.|.++.
T Consensus 144 ~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g 223 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFG 223 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTC
T ss_pred HHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCC
Confidence 999999999988 999998751 1 0 1345555 34655554321
Q ss_pred ---------HHHHHhhhhhcCCCeEEEEecCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCcceee
Q 010043 326 ---------LAALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (519)
Q Consensus 326 ---------iA~~~~r~~~~~~d~~I~V~g~~q~~-hf~~~~~i~~~l-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSk 394 (519)
++....++ ++...-|++.|.||.. |.......+.++ |.. ++...+.|. |+|.. +|+||||
T Consensus 224 ~g~pgWhiec~a~~~~~--~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~----~~~~~~~h~--g~v~~-~G~KMSK 294 (414)
T 3c8z_A 224 RGRPGWHVECSAIALTR--IGTGLDIQGGGSDLIFPHHEYSAAHAESVTGER----RFARHYVHT--GMIGW-DGHKMSK 294 (414)
T ss_dssp SEEECHHHHHHHHHHHH--TCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCS----CSEEEEEEE--CCBC---------
T ss_pred CCCCCccchhHHHHHHh--cCCCceEEEeccccccHHHHHHHHHHHHhcCCC----CcCeEEEEc--CEEec-CCeEccc
Confidence 11112222 3323346677998754 666555555555 763 334456675 56764 7899999
Q ss_pred ecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 395 RFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 395 R~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
|+||+|++.|+++++ +|++++||++++.++.++++|+++.+.+.
T Consensus 295 S~GN~v~~~~ll~~g----------------------------~g~D~lR~~ll~~~~~~d~~fs~~~l~~~ 338 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQG----------------------------VDPSAIRLGLFSGHYREDRFWSNEVLDEA 338 (414)
T ss_dssp -----CBHHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCBCCCHHHHHHH
T ss_pred ccCCcCCHHHHhhcc----------------------------CCcchheeEEEecCcCCCCCcCHHHHHHH
Confidence 999999999999873 58999999999999999999999988764
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.97 E-value=4.5e-31 Score=285.55 Aligned_cols=270 Identities=19% Similarity=0.184 Sum_probs=195.8
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.+++.|...+|||||++||||+|+++++|+++|++++.||+|.++..++|+|..+..-+.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 63 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE-------------------- 63 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHH--------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHH--------------------
Confidence 468999999999999999999999999999999999999999999999998875532110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee---ccccccCcHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~---~es~~~~~v~~vi 283 (519)
+ .|.+ ++++++.+.+.|++++++|||.+|++ ++..|.+.+.+++
T Consensus 64 --------~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 110 (497)
T 2csx_A 64 --------E--------------------LGIS-----PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVF 110 (497)
T ss_dssp --------H--------------------SSSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------H--------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHH
Confidence 0 0110 12467888899999999999999743 3344778899999
Q ss_pred HHHHHCCCeEee--cCeEEEEec-----C---------------------------------------------------
Q 010043 284 DELSKQGLVEES--QGARVIFIE-----G--------------------------------------------------- 305 (519)
Q Consensus 284 ~~L~~~g~~~~~--dGa~~~~~~-----g--------------------------------------------------- 305 (519)
++|.++|++|+. .|.+|+.++ +
T Consensus 111 ~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 190 (497)
T 2csx_A 111 EECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190 (497)
T ss_dssp HHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHH
T ss_pred HHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHH
Confidence 999999999986 455554321 0
Q ss_pred ---------CCCCeEEEc--CC---CCccccc-hh------------HHHHHhh-hhhcCCCeEEEEecCCccc-cHHHH
Q 010043 306 ---------VNIPLIIVK--SD---GGFNYAS-TD------------LAALWYR-LNEEKAEWIIYVTDVGQQL-HFDMV 356 (519)
Q Consensus 306 ---------~~~d~Vl~k--sD---G~~tY~t-~D------------iA~~~~r-~~~~~~d~~I~V~g~~q~~-hf~~~ 356 (519)
...|..+.| .+ |++.... .+ ++....+ ...+++| +++.|.||.. |....
T Consensus 191 ~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~~H~~~~ 268 (497)
T 2csx_A 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILRFHTVYW 268 (497)
T ss_dssp HHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHHHHHTHH
T ss_pred HHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhHhHHHHH
Confidence 002444444 22 5443311 00 1100010 0125666 7889999865 22222
Q ss_pred HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010043 357 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAE 436 (519)
Q Consensus 357 ~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~ 436 (519)
.+.+.++|+. ....+.|+ |+|+. +|+|||||+||+|++.|++++
T Consensus 269 ~a~l~~~g~~-----~~~~~~~~--G~v~~-~G~KMSKS~GN~i~~~dli~~---------------------------- 312 (497)
T 2csx_A 269 PAFLMSLGYE-----LPKKVFAH--GWWTV-EGKKMSKTLGNVVDPYEVVQE---------------------------- 312 (497)
T ss_dssp HHHHHHHTCC-----CCSCEEEE--CCEES-SSSBCCTTTTCCCCHHHHHHH----------------------------
T ss_pred HHHHHHcCCC-----CCcEEEEC--cEEEe-CCceeCCcCCCCCCHHHHHHH----------------------------
Confidence 3556778984 34567777 67886 799999999999999999997
Q ss_pred HhhhhHHHHHhhc-CCCCCCccccHHHHhcccC-CchhHHHHHHHHHHHHHHHh
Q 010043 437 AVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG-NTAVYLLYAHARICSIIRKS 488 (519)
Q Consensus 437 ~vg~~avry~~L~-~~~~~~~~Fd~~~~~~~~g-nt~~YiqYa~aR~~silrka 488 (519)
+|++++||++++ .++.++++|+++.+....+ +-..+++|+++|+++++++.
T Consensus 313 -~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~ 365 (497)
T 2csx_A 313 -YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKF 365 (497)
T ss_dssp -HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999998 7899999999999988654 44569999999999999986
No 11
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.97 E-value=9.9e-30 Score=271.24 Aligned_cols=260 Identities=19% Similarity=0.186 Sum_probs=182.3
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (519)
+|-+..|+|+|+|++||||+|++|++|+|+|+|++.||+|..+.+++|+|+|.|.- ...+++|.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~------------DehddKI~---- 105 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL------------DDGEDKVA---- 105 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC------------CCCCcHHH----
Confidence 79999999999999999999999999999999999999999999999999987621 01234332
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee--ccccccCcHHHHHHHH
Q 010043 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK--GESFYNPYIPGVIDEL 286 (519)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~--~es~~~~~v~~vi~~L 286 (519)
.+ |++ +|. .|+++++.+...|++++++|||.+++. ..+.|...+.+++++|
T Consensus 106 --~~--------------A~~------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L 158 (501)
T 3sp1_A 106 --KT--------------ARE------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKIL 158 (501)
T ss_dssp -----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred --HH--------------HHH------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHH
Confidence 11 111 121 256789999999999999999999642 3577778899999999
Q ss_pred HHCCCeEeecCeEEEEec-----C------------------------CCCCeEEEcC-----CCCccccchh----HHH
Q 010043 287 SKQGLVEESQGARVIFIE-----G------------------------VNIPLIIVKS-----DGGFNYASTD----LAA 328 (519)
Q Consensus 287 ~~~g~~~~~dGa~~~~~~-----g------------------------~~~d~Vl~ks-----DG~~tY~t~D----iA~ 328 (519)
.++|++|+.+|.+||+++ | +..|++|+|. .|.+.|.++. .++
T Consensus 159 ~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 159 EEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 999999999999999763 1 1137889986 4777777754 124
Q ss_pred HHhhh----hhcCCCeEEEEecCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHH
Q 010043 329 LWYRL----NEEKAEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (519)
Q Consensus 329 ~~~r~----~~~~~d~~I~V~g~~q~-~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~ 403 (519)
|+... ..++...-|++.|.|+. .|.....+.++++.-. +++..|.|. |+|. .+|+|||||.||+|++.
T Consensus 239 hiEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~----~~~~~w~H~--g~v~-~~G~KMSKSlGN~it~~ 311 (501)
T 3sp1_A 239 HLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK----KWCDVFVHG--EFLI-MDYNKMSKSRGNFITVK 311 (501)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS----CCCSEEEEE--CCEE-CC----------CCCHH
T ss_pred hHHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHccCC----CCCeEEEEe--eeEe-eCCeEccccCCCcCCHH
Confidence 43321 12443323777888864 3555555555655322 567889998 5577 47999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010043 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (519)
Q Consensus 404 dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~ 466 (519)
|+++++ +|++++|||+|+.+++++++|+++.+.+.
T Consensus 312 dll~~g----------------------------yg~d~lR~~lls~~yr~~l~fs~~~l~~a 346 (501)
T 3sp1_A 312 DLEDQN----------------------------FSPLDFRYLCLTSHYRNQLKFSLDNLQAS 346 (501)
T ss_dssp HHHHTT----------------------------CCHHHHHHHHHTSCTTSCEECCHHHHHHH
T ss_pred HHHhcC----------------------------CCHHHHHHHHHhccCCCCCccCHHHHHHH
Confidence 999863 58999999999999999999999988654
No 12
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.97 E-value=2.7e-30 Score=279.59 Aligned_cols=270 Identities=18% Similarity=0.149 Sum_probs=196.5
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.+++.|..++|||+|++||||+|+++++|+++|++++.||+|.+....+|+|..+..-+.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 61 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ-------------------- 61 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHH--------------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHH--------------------
Confidence 468999999999999999999999999999999999999999999999998875432210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee---ccccccCcHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~---~es~~~~~v~~vi 283 (519)
+ .|.+ ++++++.+.+.|++++++|||.+|++ .+..|.+.+.+++
T Consensus 62 --------~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 108 (500)
T 2d5b_A 62 --------A--------------------AGED-----PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVL 108 (500)
T ss_dssp --------H--------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------H--------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHH
Confidence 0 0110 23467888899999999999999743 2344778899999
Q ss_pred HHHHHCCCeEee--cCeEEEEec-----CC--------------------------------------------------
Q 010043 284 DELSKQGLVEES--QGARVIFIE-----GV-------------------------------------------------- 306 (519)
Q Consensus 284 ~~L~~~g~~~~~--dGa~~~~~~-----g~-------------------------------------------------- 306 (519)
++|.++|++|+. .|.+|+.++ ++
T Consensus 109 ~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 188 (500)
T 2d5b_A 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRN 188 (500)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHH
T ss_pred HHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHH
Confidence 999999999986 354443211 00
Q ss_pred ---------CCCeEEEc--CC---CCcc----------ccchh------HHHHHhh-hh-hcCCCeEEEEecCCccccHH
Q 010043 307 ---------NIPLIIVK--SD---GGFN----------YASTD------LAALWYR-LN-EEKAEWIIYVTDVGQQLHFD 354 (519)
Q Consensus 307 ---------~~d~Vl~k--sD---G~~t----------Y~t~D------iA~~~~r-~~-~~~~d~~I~V~g~~q~~hf~ 354 (519)
..|..+.| .+ |++. |+... ++|+..+ +. .++.| |++.|.||.. |.
T Consensus 189 ~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~d--i~~~G~D~~~-fh 265 (500)
T 2d5b_A 189 EVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--WHLIGKDILK-PH 265 (500)
T ss_dssp HHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGE--EEEEEGGGHH-HH
T ss_pred HHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCe--EEEEeechhh-hH
Confidence 12444444 22 5421 11111 1222110 11 24554 8999999976 55
Q ss_pred HHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 010043 355 MVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELE 432 (519)
Q Consensus 355 ~~~--~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~ 432 (519)
.++ +.+.++|+. ....+.|+ |+|+.++|+|||||+||+|++.|++++
T Consensus 266 ~~~~~a~~~~~g~~-----~~~~v~~~--G~v~~~~G~KMSKS~GN~i~p~d~i~~------------------------ 314 (500)
T 2d5b_A 266 AVFWPTMLKAAGIP-----MYRHLNVG--GFLLGPDGRKMSKTLGNVVDPFALLEK------------------------ 314 (500)
T ss_dssp HTHHHHHHHHHTCC-----CCSEEEEE--CCEECTTSSCCCTTTTCCCCHHHHHHH------------------------
T ss_pred HHHHHHHHHHcCCC-----CCcEEEEC--ceEEeCCCCcccccCCCCCCHHHHHHh------------------------
Confidence 554 556778884 34567777 779877899999999999999999997
Q ss_pred HHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcccCCc-hhHHHHHHHHHHHHHHHh
Q 010043 433 QTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKGNT-AVYLLYAHARICSIIRKS 488 (519)
Q Consensus 433 ~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~~~gnt-~~YiqYa~aR~~silrka 488 (519)
+|++++||++++ .++.++++|+++.+.+..++. ...+.++++|+.+++++.
T Consensus 315 -----~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~ 367 (500)
T 2d5b_A 315 -----YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRF 367 (500)
T ss_dssp -----HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999998 789999999999987754321 224677889999988775
No 13
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.96 E-value=2.6e-29 Score=275.49 Aligned_cols=274 Identities=12% Similarity=0.118 Sum_probs=198.3
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
...+++.|--.-|+|||++||||+|++++||+|+|+++..||+|....+++|+|.++...+... +
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-----------g---- 79 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL-----------G---- 79 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----------T----
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh-----------C----
Confidence 3456777767778888999999999999999999999999999999999999999886443210 0
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ecc--ccccCcHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPG 281 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~e--s~~~~~v~~ 281 (519)
.+ ++++++.+.+.|++++++|||.+|. ..+ ..|.+.+++
T Consensus 80 --------------~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 121 (560)
T 3h99_A 80 --------------IT------------------------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSEL 121 (560)
T ss_dssp --------------SC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHH
T ss_pred --------------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHH
Confidence 01 1345677788999999999999963 333 466778999
Q ss_pred HHHHHHHCCCeEeecCeEEEEec-----------------------C---------------------------------
Q 010043 282 VIDELSKQGLVEESQGARVIFIE-----------------------G--------------------------------- 305 (519)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~~~~-----------------------g--------------------------------- 305 (519)
++++|.++|++|+.++.+|+... |
T Consensus 122 ~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 201 (560)
T 3h99_A 122 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSE 201 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEE
T ss_pred HHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecc
Confidence 99999999999999888876321 0
Q ss_pred ------------------------------------CCCCeEEEcCC---CCc----------cccchhHHHH--H--h-
Q 010043 306 ------------------------------------VNIPLIIVKSD---GGF----------NYASTDLAAL--W--Y- 331 (519)
Q Consensus 306 ------------------------------------~~~d~Vl~ksD---G~~----------tY~t~DiA~~--~--~- 331 (519)
...|..|.|.. |.+ +|+...++|. . +
T Consensus 202 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~ 281 (560)
T 3h99_A 202 HFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLC 281 (560)
T ss_dssp EEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHh
Confidence 11233444443 432 2222223331 0 1
Q ss_pred -------hhh-hcCCC---eEEEEecCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCc
Q 010043 332 -------RLN-EEKAE---WIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (519)
Q Consensus 332 -------r~~-~~~~d---~~I~V~g~~q~~-hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~ 399 (519)
.+. .|..| .+++|+|.||.. |.....+++.++|+.+ ...+. ..|+|+. +|+|||||+||+
T Consensus 282 ~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~-----p~~v~--~hg~v~~-~G~KMSKS~GNv 353 (560)
T 3h99_A 282 DKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRK-----PSNLF--VHGYVTV-NGAKMSKSRGTF 353 (560)
T ss_dssp HHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCC-----CSEEE--EECCEEE-TTEECCTTTTCC
T ss_pred hccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCCC-----CcEEE--EEeEEEe-CCeeccccCCCc
Confidence 111 13344 579999999976 3334445678889842 22222 3478886 799999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-C-CCccccHHHHhc-ccCCchhHHHH
Q 010043 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLN-DKGNTAVYLLY 476 (519)
Q Consensus 400 v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~-~~~~Fd~~~~~~-~~gnt~~YiqY 476 (519)
|++.|++++ +|++|+||++++..+ . .+++||++.+.+ .+.+...++.+
T Consensus 354 v~p~d~i~~-----------------------------~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n 404 (560)
T 3h99_A 354 IKASTWLNH-----------------------------FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN 404 (560)
T ss_dssp CBHHHHHHH-----------------------------SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTH
T ss_pred CCHHHHHHH-----------------------------cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999998 699999999999876 4 699999999876 34455557788
Q ss_pred HHHHHHHHHHHh
Q 010043 477 AHARICSIIRKS 488 (519)
Q Consensus 477 a~aR~~silrka 488 (519)
+++|++++++|.
T Consensus 405 ~~~R~~~~~~~~ 416 (560)
T 3h99_A 405 LASRNAGFINKR 416 (560)
T ss_dssp HHHTTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 889999999886
No 14
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.96 E-value=1.2e-28 Score=268.28 Aligned_cols=271 Identities=17% Similarity=0.165 Sum_probs=192.9
Q ss_pred CCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHH
Q 010043 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (519)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (519)
+..+++.|.-+-|||+|++||||+|+++++|+|+|++++.||+|.++..++|+|..+..-+..
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~----------------- 71 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK----------------- 71 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-----------------
Confidence 345678888999999999999999999999999999999999999999999988755422110
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecccc--ccCcHHH
Q 010043 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESF--YNPYIPG 281 (519)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~es~--~~~~v~~ 281 (519)
.|.+ ++++++.+...|++++++|||.+| +.+++. |.+.+.+
T Consensus 72 -------------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 115 (524)
T 2x1l_A 72 -------------------------------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKA 115 (524)
T ss_dssp -------------------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred -------------------------------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHH
Confidence 0111 234678888999999999999997 444444 7788999
Q ss_pred HHHHHHHCCCeEeecCeEEEEec------------C--------CCCCeE------------------------------
Q 010043 282 VIDELSKQGLVEESQGARVIFIE------------G--------VNIPLI------------------------------ 311 (519)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~~~~------------g--------~~~d~V------------------------------ 311 (519)
++++|.++|++|+.+|.+|+... | ..+..|
T Consensus 116 ~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i 195 (524)
T 2x1l_A 116 IWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFI 195 (524)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGE
T ss_pred HHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCee
Confidence 99999999999999999887432 1 001011
Q ss_pred ---------------------EEcC---CCCc--------ccc--chhHHHHH---h------hh-hhcCCCeEEEEecC
Q 010043 312 ---------------------IVKS---DGGF--------NYA--STDLAALW---Y------RL-NEEKAEWIIYVTDV 347 (519)
Q Consensus 312 ---------------------l~ks---DG~~--------tY~--t~DiA~~~---~------r~-~~~~~d~~I~V~g~ 347 (519)
+.|. -|++ .|+ .+.++|.. + .+ ..+++| |++.|.
T Consensus 196 ~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~ 273 (524)
T 2x1l_A 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGK 273 (524)
T ss_dssp ESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEG
T ss_pred CCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEee
Confidence 1110 1221 111 11111100 0 00 013455 778888
Q ss_pred CccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCC
Q 010043 348 GQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKE 425 (519)
Q Consensus 348 ~q~~hf~~~~--~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~ 425 (519)
||. .|..++ +.+.++|+.+ ....+.| |+|+. +|+|||||+||+|++.|++++
T Consensus 274 D~~-~fh~~~~~a~l~~~g~~~----~~~v~~h---G~v~~-~G~KMSKS~GN~v~p~d~i~~----------------- 327 (524)
T 2x1l_A 274 DII-RFHTVYWPAFLMSAGLPL----PKRIFAH---GWLLN-RGEKMSKSIGNVVDPVNLVDT----------------- 327 (524)
T ss_dssp GGH-HHHHTHHHHHHHHHTCCC----CSCEEEE---CCEEE-CSCSEETTTEESSCHHHHHHH-----------------
T ss_pred chh-HhHHHHHHHHHHHCCCCC----CcEEEEC---cEEEe-CCcccCCcCCCCCCHHHHHHH-----------------
Confidence 886 455544 4556778842 2233444 67875 799999999999999999997
Q ss_pred CCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhccc-CCchhHHHHHHHHHHHHHHHh
Q 010043 426 WTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDK-GNTAVYLLYAHARICSIIRKS 488 (519)
Q Consensus 426 ~~~~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~~~-gnt~~YiqYa~aR~~silrka 488 (519)
+|++++||++++ ..+.++++||++.+.+.. .+....+.++..|+.+++++.
T Consensus 328 ------------~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~ 380 (524)
T 2x1l_A 328 ------------FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKN 380 (524)
T ss_dssp ------------HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_pred ------------cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999998 788999999999987643 233445778889999998874
No 15
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.94 E-value=1.5e-26 Score=247.47 Aligned_cols=292 Identities=18% Similarity=0.131 Sum_probs=176.4
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEE------EeccCCcchHHHHHHHHHHhhC---CCCCc
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLR------RNHVGDWGTQFGMLIEYLFEKF---PNSED 197 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~------~~yi~D~G~Q~~~l~~~~~~~~---~~~~~ 197 (519)
---|++++++|||||+|||||+|++++++.+||. +.|.-|.| ..++++++.||-.-...+.-.+ |+...
T Consensus 10 ~~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 10 HHHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp ---CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred cceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 3458999999999999999999999999999999 56666655 4566666666643333322111 11110
Q ss_pred cccccHH-HHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--cee-eeccc
Q 010043 198 ANETAIG-ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV--DLE-EKGES 273 (519)
Q Consensus 198 ~~~~~i~-~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi--~fd-~~~es 273 (519)
+.+.+.. +-.++|.+ .+++.+ ++|....+ .....-++.+++.....|+ .++ +.+
T Consensus 88 ~~g~y~QS~r~~~y~~-------------~a~~L~---~~G~aY~c----~ct~eel~~~r~~~~~~g~~~~yd~~~s-- 145 (481)
T 2o5r_A 88 DHGPYRQSERVEIYRE-------------HAERLV---KEGKAYYV----YAYPEEIEEMREKLLSEGKAPHYSQEMF-- 145 (481)
T ss_dssp TTCCCBGGGGHHHHHH-------------HHHHHH---HTTSEEEE----CCCSTTTHHHHHHHHHTTCCCCBCGGGG--
T ss_pred CCCceeeeccHHHHHH-------------HHHHHH---HCCCeeEe----cCCHHHHHHHHHHHHhcCCCCCCCCchh--
Confidence 1111100 00011211 111111 12221100 0000112333445556777 343 211
Q ss_pred cccCc-HHHHHHHHHHCC-------------CeEe--ecCeEEEEecCCCCCeEEEcCCCCccccchhHHHHHhhhhhcC
Q 010043 274 FYNPY-IPGVIDELSKQG-------------LVEE--SQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEK 337 (519)
Q Consensus 274 ~~~~~-v~~vi~~L~~~g-------------~~~~--~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~ 337 (519)
+... .++..+.+ +.| +.++ ..|++|++.+ .-.|+||+|+||+|||.. |..+++. .++
T Consensus 146 -~r~l~~~e~~~~~-~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~-~~~D~Vl~RsDG~ptY~~---a~vvDD~-~~g 218 (481)
T 2o5r_A 146 -EKFDTPERRREYE-EKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTG-AIGDFVIMRSNGLPTYNF---ACVVDDM-LME 218 (481)
T ss_dssp -TTTCCHHHHHHHH-HTTCCCEEEECCCSSCEEEEETTTEEEEECTT-SSCBEEEECTTSCBCHHH---HHHHHHH-HTT
T ss_pred -hhcCCHHHHHHHH-hcCCcceEEEEcCCCceEEEecccceeEeccc-cCCCeEEEccCCCcchhh---HHHHHHH-hCC
Confidence 1121 23333333 233 2333 2466766544 235899999999999953 3334444 457
Q ss_pred CCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHHH--HHHH
Q 010043 338 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN--RSKA 415 (519)
Q Consensus 338 ~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~~--~a~~ 415 (519)
++++| +|.||..|++++..++++||+. .+.+.|+++ +++.+|+|||||+|++ +++++++++.. ...+
T Consensus 219 ithvi--rG~D~~~~t~~q~~l~~aLG~~------~p~~~H~pl--il~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~ 287 (481)
T 2o5r_A 219 ITHVI--RGDDHLSNTLRQLALYEAFEKA------PPVFAHVST--ILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVN 287 (481)
T ss_dssp CSEEE--EEGGGHHHHHHHHHHHHHTTCC------CCEEEEECC--EECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHH
T ss_pred CCeEE--EChhHHHhHHHHHHHHHHcCCC------CCeEEEEee--EECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHH
Confidence 79985 9999999999999999999995 257999976 7778999999999988 99999998542 2333
Q ss_pred HHHHhcCCCCCCH-H--HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCC
Q 010043 416 VLIERGKDKEWTE-E--ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGN 469 (519)
Q Consensus 416 ~i~~~~~~~~~~~-~--e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~gn 469 (519)
.+.. .+|+. . ++..+ .+++++|++++.+.++..|||+++.++|+.
T Consensus 288 ~l~~----lG~s~~~~~e~~~~-----~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~ 335 (481)
T 2o5r_A 288 YLAL----LGWSHPEGKELLTL-----EELISSFSLDRLSPNPAIFDPQKLKWMNGY 335 (481)
T ss_dssp HHHT----SSBCCTTCCCCCCH-----HHHHHHCCGGGBCSSCEECCHHHHHHHHHH
T ss_pred HHHH----hCCCCCcccccCCH-----HHHHHhCChhhCCccCcccChHHhhhhCHH
Confidence 3332 22322 0 11111 368999999999999999999999999753
No 16
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.93 E-value=4.3e-26 Score=248.97 Aligned_cols=269 Identities=17% Similarity=0.160 Sum_probs=183.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHH
Q 010043 102 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (519)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~ 181 (519)
.+.++...+.++++.+..+..+ ..++|++.|+ |||||+|||||+|++++++.+||- +-|-=+ --|.|+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~i---lRieDtD~-- 173 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFI---LRIEDTDT-- 173 (592)
T ss_dssp ----------------CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEE---ECBCCCCS--
T ss_pred ChHHHHHHHHHHHHcChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEE---EEecCcCh--
Confidence 4567888888888877653322 2367999999 999999999999999999999984 223222 22334211
Q ss_pred HHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010043 182 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 261 (519)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~ 261 (519)
. +.+..+.+.+.++|+
T Consensus 174 ----------------------------------------~------------------------r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 174 ----------------------------------------E------------------------RSSREYEQQILESLR 189 (592)
T ss_dssp ----------------------------------------S------------------------SCCHHHHHHHHHHHH
T ss_pred ----------------------------------------h------------------------hccHHHHHHHHHHHH
Confidence 0 001223456777999
Q ss_pred HcCCceeee----------ccccccCcHHHHHHHHHHCCCeEe-----------------------ecC---eEEEEec-
Q 010043 262 RLRVDLEEK----------GESFYNPYIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE- 304 (519)
Q Consensus 262 ~Lgi~fd~~----------~es~~~~~v~~vi~~L~~~g~~~~-----------------------~dG---a~~~~~~- 304 (519)
.||+.+|.. .-|.+.+...++++.|.++|.+|. .+| +++++++
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~ 269 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLP 269 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCS
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCC
Confidence 999998642 223333567899999999999997 346 6777664
Q ss_pred -----------------CCCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCC
Q 010043 305 -----------------GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (519)
Q Consensus 305 -----------------g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~ 367 (519)
++..|+||+|+||.|||.. |..+++. ..+++|+| +|.||..+.+++..+.++||+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~---a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~- 342 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE- 342 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHH---HHHHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCC-
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhh---HHHHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCC-
Confidence 3457899999999999995 5556766 57999996 9999999999999999999995
Q ss_pred CCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHH--HHHHHHHHhhhhHH
Q 010043 368 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEE--ELEQTAEAVGYGAA 443 (519)
Q Consensus 368 ~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~~--e~~~~a~~vg~~av 443 (519)
.+.+.|++ +|++.+|+|||||+|+ ++++++++.+. +...+.+..- +|+.. ++..+ -+.+
T Consensus 343 -----~P~~~hlp--li~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~l----G~s~~~~e~~s~-----~e~i 405 (592)
T 3al0_C 343 -----APVFMHIP--LILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALL----GWRVEGDEIFTI-----EEKL 405 (592)
T ss_dssp -----CCBCCEEC--CCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTT----TBCCCSCSCCCT-----TTTG
T ss_pred -----CCeEEEee--eeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHh----CCCCcccccCCH-----HHHH
Confidence 36789995 5888999999999998 69999998654 3334444322 23211 11111 2358
Q ss_pred HHHhhcCCCCCCccccHHHHhcccC
Q 010043 444 KYFDLKNNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 444 ry~~L~~~~~~~~~Fd~~~~~~~~g 468 (519)
+.|++..-+.++..||++++..+|+
T Consensus 406 ~~f~~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 406 QSFDPKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp GGCCTTSBCSSCCBCCHHHHHHHHH
T ss_pred hhCChhhcCcccceeCHHHHhhhhH
Confidence 8999999999999999999988864
No 17
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.92 E-value=1.4e-25 Score=243.79 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=157.9
Q ss_pred CCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcc--hHHH-HHHHHHHhhCCCCCccccccHHHHHHHHHH
Q 010043 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG--TQFG-MLIEYLFEKFPNSEDANETAIGELQEFYRR 212 (519)
Q Consensus 136 SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G--~Q~~-~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~ 212 (519)
+|||||++||||+|+++++|+++|+|++.||+|..+++++|+| +++. .+..+. ..+.+.++.
T Consensus 27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~-------~~~~G~~~~-------- 91 (523)
T 1irx_A 27 GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW-------KDYLGMPIS-------- 91 (523)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG-------GGGTTSBGG--------
T ss_pred CCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHH-------HHHcCCCcc--------
Confidence 6999999999999999999999999999999999999999999 4330 000000 000011110
Q ss_pred HhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccc-ccC-cHHHHHHHHHHCC
Q 010043 213 SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-YNP-YIPGVIDELSKQG 290 (519)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es~-~~~-~v~~vi~~L~~~g 290 (519)
+-.||. ..|+++++.+.+.|+++++.|||.+|..+.|. |.+ .+.+++++|.++|
T Consensus 92 ----------------------~~p~p~--~~~~~~~~~~~~~~~~~l~~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 92 ----------------------EVPDPW--GCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp ----------------------GSCCTT--SSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTH
T ss_pred ----------------------cCCcch--hhHHHHHHHHHHHHHHHHHHcCCCceEEechhhccchHHHHHHHHHHHch
Confidence 111221 12456788999999999999999997556776 755 8999999999999
Q ss_pred ----------------CeEeecCeEEEEec--CCC-------------CCeEEEcCCCCccccch-----------hHHH
Q 010043 291 ----------------LVEESQGARVIFIE--GVN-------------IPLIIVKSDGGFNYAST-----------DLAA 328 (519)
Q Consensus 291 ----------------~~~~~dGa~~~~~~--g~~-------------~d~Vl~ksDG~~tY~t~-----------DiA~ 328 (519)
.+|..+ |+++. +.. .+.-..-.+|.+++... |+++
T Consensus 148 ~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~ 224 (523)
T 1irx_A 148 DKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPM 224 (523)
T ss_dssp HHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHH
T ss_pred HHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccCCCCceeeeecCCCccccCCcCCCCCCCCCcchHh
Confidence 566432 34221 110 11111113444433221 3332
Q ss_pred HHhhhhhcCCCeEEEEecCCccc------cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CCcceeeecCCccc
Q 010043 329 LWYRLNEEKAEWIIYVTDVGQQL------HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGKRLRTRFSEVVR 401 (519)
Q Consensus 329 ~~~r~~~~~~d~~I~V~g~~q~~------hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~-~g~kmSkR~G~~v~ 401 (519)
..+- ++ ..|++.|.||.. |..++. .+++|+.+ +.+.|+ |+|+++ +|+|||||+||+|+
T Consensus 225 ~~~~---l~--~~vd~~G~Dh~~~h~s~~~~~~i~--~~alG~~~------p~~~h~--~~i~~~g~g~KmSKs~Gn~i~ 289 (523)
T 1irx_A 225 RWSH---FG--VDFEPAGKDHLVAGSSYDTGKEII--KEVYGKEA------PLSLMY--EFVGIKGQKGKMSGSKGNVIL 289 (523)
T ss_dssp HHHH---SC--CCBCCEEHHHHSTTSHHHHHHHHH--HHHHCCCC------CBCCEE--CCEEESCC---------CCCC
T ss_pred hHHH---cC--CCCcCCCcCccCCCcchhhHHHHH--HHHhCCCC------CeEEEE--EEEEeCCCCCCCCCcCCCCCC
Confidence 2221 22 346688999976 444443 16889842 368887 568877 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHH-HHh
Q 010043 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QML 464 (519)
Q Consensus 402 l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~-~~~ 464 (519)
++|++++ ++++|+|||+++..+.+++.|+++ .+.
T Consensus 290 ~~~~~~~-----------------------------~~pdalR~~l~~~~~~~~~~fs~~~~l~ 324 (523)
T 1irx_A 290 LSDLYEV-----------------------------LEPGLVRFIYARHRPNKEIKIDLGLGIL 324 (523)
T ss_dssp HHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECCSTTHH
T ss_pred HHHHHHH-----------------------------cCHHHHHHHHHhcCCCCCceeCcchhHH
Confidence 9999987 589999999999999999999998 443
No 18
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.91 E-value=5.1e-24 Score=239.24 Aligned_cols=270 Identities=13% Similarity=0.116 Sum_probs=186.9
Q ss_pred ceEEEEecCCCcCCCCccchhHH-HHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~-~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
++++|....|||+|++||||+|+ ++++|+++|.+|..||+|......+++|..+..-+... +
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~-----------G------ 64 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-----------G------ 64 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----------T------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc-----------C------
Confidence 57899999999999999999999 89999999999999999999999999999765332100 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 283 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---es~~~~~v~~vi 283 (519)
. + ++++++.+...|++++++|||.+|++. +..|...+++++
T Consensus 65 ------------~------------------~------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f 108 (722)
T 1rqg_A 65 ------------R------------------S------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (722)
T ss_dssp ------------C------------------C------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------------C------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHH
Confidence 0 1 235688888999999999999998753 334667899999
Q ss_pred HHHHHCCCeEeecCeEEEEec-----------------------C-----------------------------------
Q 010043 284 DELSKQGLVEESQGARVIFIE-----------------------G----------------------------------- 305 (519)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~-----------------------g----------------------------------- 305 (519)
.+|.++|++|+.+..+++... |
T Consensus 109 ~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qw 188 (722)
T 1rqg_A 109 LKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHY 188 (722)
T ss_dssp HHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEE
T ss_pred HHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccE
Confidence 999999999986655544321 0
Q ss_pred ---------------------------------C-CCCeEEEc--------------CCCCccccchh--HHHHH----h
Q 010043 306 ---------------------------------V-NIPLIIVK--------------SDGGFNYASTD--LAALW----Y 331 (519)
Q Consensus 306 ---------------------------------~-~~d~Vl~k--------------sDG~~tY~t~D--iA~~~----~ 331 (519)
. ..|.-|.| .+|...|..-| ++|.. +
T Consensus 189 F~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~ 268 (722)
T 1rqg_A 189 YIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEH 268 (722)
T ss_dssp EECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHH
Confidence 0 01222222 12223343333 33321 1
Q ss_pred h--------hh-hcCC-C---eEEEEecCCccccHHHHH--HHHHHcC----------CCCCCCCCCCcEEEEEeEEEEc
Q 010043 332 R--------LN-EEKA-E---WIIYVTDVGQQLHFDMVF--SAAKRAG----------WLSADDSTYPKASHVGFGLVLG 386 (519)
Q Consensus 332 r--------~~-~~~~-d---~~I~V~g~~q~~hf~~~~--~i~~~lg----------~~~~~~~~~~~~~Hv~~g~V~~ 386 (519)
. +. -|+. | ..+++.|.|+..+ ..++ +.+.++| +. +...+.|. |+|+.
T Consensus 269 ~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~f-H~~~wpA~l~~~~~~l~~d~~rg~~-----~Pk~v~~h--G~v~~ 340 (722)
T 1rqg_A 269 FKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPF-HAIFWPAFLMAYGKYKDEEVEAEWN-----LPYDIPAN--EYLTL 340 (722)
T ss_dssp HHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHH-HHTHHHHHHHTTCCBCSSSCCBCBC-----CCSBCCEE--CCEEE
T ss_pred HhhcCCchHHHhccCCCCCCCeeEEEcccccccc-chhhhHHHHhccCCCcccccccCCC-----CCCEEEEe--eeEEe
Confidence 0 11 1331 2 4578899987542 2222 3445554 42 33566666 56775
Q ss_pred CCCcceeeecCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhc
Q 010043 387 EDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLN 465 (519)
Q Consensus 387 ~~g~kmSkR~G~~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~-~~~~~~~Fd~~~~~~ 465 (519)
+|+|||||+||+|++.|++++ +|.+++||++++. ...++++|+++.+.+
T Consensus 341 -~G~KMSKS~GNvV~p~d~i~~-----------------------------ygaDalR~~ll~~~~~~~D~~fs~~~~~~ 390 (722)
T 1rqg_A 341 -EGKKFSTSRNWAIWVHEFLDV-----------------------------FPADYLRYYLTTIMPETRDSDFSFSDFKV 390 (722)
T ss_dssp -TTEECBTTTTBSCBHHHHTTT-----------------------------SCHHHHHHHHHHTCCSSSCEEECHHHHHH
T ss_pred -CCeeeeeeCCCcCCHHHHHHh-----------------------------cCchHHHHHHHhcCCCCCCCccCHHHHHH
Confidence 799999999999999999986 6999999999997 779999999998866
Q ss_pred c-cCCchhHHHHHHHHHHHHHHHh
Q 010043 466 D-KGNTAVYLLYAHARICSIIRKS 488 (519)
Q Consensus 466 ~-~gnt~~YiqYa~aR~~silrka 488 (519)
. +.+..--+.....|+.+++++.
T Consensus 391 ~~n~~l~~~l~N~~~R~~~~~~k~ 414 (722)
T 1rqg_A 391 RINEELVNNLGNFVHRALTFVNRY 414 (722)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2121111222237888888775
No 19
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.89 E-value=1.9e-22 Score=215.71 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=179.3
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++|.+=| .|.|||+|||||+|++++-...||- +.....--|.|+... .
T Consensus 24 ~~v~~RF-APsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~------------------R-------- 71 (488)
T 3afh_A 24 ELVRVRF-APSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE------------------R-------- 71 (488)
T ss_dssp -CCEEEE-CCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT------------------T--------
T ss_pred CCceEEE-CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc------------------c--------
Confidence 3466645 5999999999999999877777764 334444456664220 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee----------ccccccC
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNP 277 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~----------~es~~~~ 277 (519)
. +..+.+.+.++|+.||+.+|.. .-|.+.+
T Consensus 72 -----------~-----------------------------~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~ 111 (488)
T 3afh_A 72 -----------S-----------------------------SREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLE 111 (488)
T ss_dssp -----------C-----------------------------CHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHH
T ss_pred -----------c-----------------------------cHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHH
Confidence 0 1123356677999999998642 2344445
Q ss_pred cHHHHHHHHHHCCCeEe-----------------------ecC---eEEEEec------------------CCCCCeEEE
Q 010043 278 YIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE------------------GVNIPLIIV 313 (519)
Q Consensus 278 ~v~~vi~~L~~~g~~~~-----------------------~dG---a~~~~~~------------------g~~~d~Vl~ 313 (519)
...++++.|.++|.+|. .+| +++++++ ++..|+||+
T Consensus 112 ~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~ 191 (488)
T 3afh_A 112 IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIM 191 (488)
T ss_dssp HHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEE
T ss_pred HHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEE
Confidence 67899999999999996 235 4666553 234689999
Q ss_pred cCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccee
Q 010043 314 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 393 (519)
Q Consensus 314 ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmS 393 (519)
|+||.|||.. |..+++. ..+++|+| +|.||..+.+++..+.++||+. .+.+.|++ +|++.+|+|||
T Consensus 192 R~DG~PtY~l---A~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~------~P~f~H~p--li~~~~g~KLS 257 (488)
T 3afh_A 192 KSNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE------APVFMHIP--LILGSDRTPLS 257 (488)
T ss_dssp CTTSCBCHHH---HHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEEC--CEECTTSSBCC
T ss_pred ecCCCeehhh---HHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCC------CCeEEEEe--eeeCCCCCccc
Confidence 9999999994 5666776 58999996 9999999999999999999995 36899995 58889999999
Q ss_pred eecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHH--HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC
Q 010043 394 TRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEE--ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (519)
Q Consensus 394 kR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~~--e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~~~g 468 (519)
||+|+ ++++++++.+. +...+.+..-| |+.. ++..+. +.++.|+++.-+.++..||++++..+|+
T Consensus 258 KR~g~-~~l~~~r~~G~~peal~n~l~~lG----~s~~~~e~~s~~-----e~i~~f~~~~i~~~~~~fd~~kl~~~N~ 326 (488)
T 3afh_A 258 KRHGA-TSVEHFRREGILSRALMNYLALLG----WRVEGDEIFTIE-----EKLQSFDPKDISNKGVIFDYQKLEWVNG 326 (488)
T ss_dssp TTTSC-CBHHHHHHHTCCHHHHHHHHHHTT----CCCSSCSCCCHH-----HHGGGCCGGGSCSSCEECCHHHHHHHHH
T ss_pred CcCCc-ccHHHHHHCCCCHHHHHHHHHHhC----CCCcccccCCHH-----HHHhhCChhhcCccccccChHHhhhccH
Confidence 99998 59999999754 33455554332 2210 111111 2588999999999999999999999864
No 20
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.87 E-value=2.2e-21 Score=211.72 Aligned_cols=247 Identities=18% Similarity=0.165 Sum_probs=169.4
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
+.|+..|.-.-|+|||++||||+|+.++.|+++|.+|..||+|..+...+|+|..+..-+.- .+
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-----------~g----- 70 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-----------KQ----- 70 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-----------TT-----
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-----------cC-----
Confidence 46778898888999999999999999999999999999999999999999999866432210 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc---cccCcHHHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYIPGV 282 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~es---~~~~~v~~v 282 (519)
. + .+++++.+.+.|++++++|||.+||+..+ .|...+.++
T Consensus 71 -------------~------------------~------~~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 113 (542)
T 3u1f_A 71 -------------V------------------S------PYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKEL 113 (542)
T ss_dssp -------------S------------------C------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHH
T ss_pred -------------C------------------C------HHHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHH
Confidence 0 1 12457777888999999999999986542 456679999
Q ss_pred HHHHHHCCCeEeecCeEEEEec-----------------CC-------C-------------------------------
Q 010043 283 IDELSKQGLVEESQGARVIFIE-----------------GV-------N------------------------------- 307 (519)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~~~~-----------------g~-------~------------------------------- 307 (519)
+.+|.++|++|+....+++... |+ .
T Consensus 114 f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~ 193 (542)
T 3u1f_A 114 WTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANP 193 (542)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCT
T ss_pred HHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcc
Confidence 9999999999986655444221 00 0
Q ss_pred --------------------CCeEEEc--C----CCCcc--------ccchh--HHHHH---h----------------h
Q 010043 308 --------------------IPLIIVK--S----DGGFN--------YASTD--LAALW---Y----------------R 332 (519)
Q Consensus 308 --------------------~d~Vl~k--s----DG~~t--------Y~t~D--iA~~~---~----------------r 332 (519)
.|.-+-| . =|.|. |.--| ++|.. + .
T Consensus 194 ~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~ 273 (542)
T 3u1f_A 194 GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNE 273 (542)
T ss_dssp TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGG
T ss_pred cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhh
Confidence 0111111 0 12221 11111 01100 0 0
Q ss_pred hhhcCCCeEEEEecCCccccHHH--HHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHHHH
Q 010043 333 LNEEKAEWIIYVTDVGQQLHFDM--VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (519)
Q Consensus 333 ~~~~~~d~~I~V~g~~q~~hf~~--~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e~~ 410 (519)
...+..| +++.|.|+.. |.. ..+.+.++|++ ....+.|. |++. .+|+|||||+||+|++.|+++.
T Consensus 274 ~~~~p~d--~~~~G~D~~~-fh~~~~~a~l~~~g~~-----~~~~v~~h--g~l~-~~G~KMSKSlGNvi~p~~~i~~-- 340 (542)
T 3u1f_A 274 LERFPAD--VHVIGKDILK-FHAIYWPAFLLSAGLP-----LPKKIVAH--GWWT-KDRKKISKSLGNVFDPVEKAEE-- 340 (542)
T ss_dssp TTCCSCS--EEEEEGGGHH-HHHTHHHHHHHHHTCC-----CCSCEEEE--CCCE-ETTBCCBTTTTBCCCHHHHHHH--
T ss_pred hcCCcce--EEEecccccc-cccchhHHHHHhhccc-----ccceeccc--ccee-cCCceeccccCCCCChhHHHhh--
Confidence 0011222 6778888743 222 22334566874 34556666 5565 4699999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhc
Q 010043 411 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN 465 (519)
Q Consensus 411 ~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~-~~~~~~~~Fd~~~~~~ 465 (519)
+|.+++||++++ ....++++|+++.+..
T Consensus 341 ---------------------------ygaD~lR~~l~~~~~~~~d~~fs~~~~~~ 369 (542)
T 3u1f_A 341 ---------------------------FGYDALKYFLLRESGFSDDGDYSDKNMIA 369 (542)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCTTSCCEECHHHHHH
T ss_pred ---------------------------cCchHHHHHHHhcCcccccccccHHHHHH
Confidence 699999999997 5579999999998755
No 21
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.87 E-value=1.1e-20 Score=215.19 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=102.7
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++++|++.+|||||+|||||+|+.++||+++|+++..||+|.+..+.+++|+++...+..+.. ++.+. +
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~--------~~~~~--~ 102 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--------RDPKT--I 102 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT--------TCHHH--H
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc--------cCchH--H
Confidence 5689999999999999999999999999999999999999999999999999999877654321 01111 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----c--ccccCcH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----E--SFYNPYI 279 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----e--s~~~~~v 279 (519)
+.+. +.+.-.. ..+.+ + ...+++++.+.+.+++++++|||.+||.. + ..|...+
T Consensus 103 -~~~~---~~~g~~~-------~~~~~---~-----~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v 163 (810)
T 1wkb_A 103 -WIYR---DVYKVPE-------EILWT---F-----EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFI 163 (810)
T ss_dssp -HHHH---HTSCCCH-------HHHHG---G-----GSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHH
T ss_pred -HHHH---HHhCCCH-------HHHHH---H-----HHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHH
Confidence 1111 1111110 00000 0 11235578899999999999999999743 4 4566678
Q ss_pred HHHHHHHHHCCCeEe
Q 010043 280 PGVIDELSKQGLVEE 294 (519)
Q Consensus 280 ~~vi~~L~~~g~~~~ 294 (519)
++++.+|.++|++|+
T Consensus 164 ~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 164 EWQFWKLKEKGYIVK 178 (810)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEE
Confidence 999999999999986
No 22
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.86 E-value=5.8e-22 Score=199.80 Aligned_cols=233 Identities=18% Similarity=0.081 Sum_probs=149.6
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHH
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (519)
=-.|+|||+|||||+|++++....|| ++.+...--|.|.... +
T Consensus 9 RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~----------R---------------------- 51 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP----------R---------------------- 51 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG----------G----------------------
T ss_pred EECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch----------h----------------------
Confidence 45799999999999999986555554 4566666666773220 0
Q ss_pred hcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCC
Q 010043 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 291 (519)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~es~~~~~v~~vi~~L~~~g~ 291 (519)
. +..+.+.+.++|+.||+.+|. ...|.+.+...++++.|.++|+
T Consensus 52 -----~-----------------------------~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~ 97 (298)
T 1nzj_A 52 -----E-----------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGL 97 (298)
T ss_dssp -----S-----------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTC
T ss_pred -----h-----------------------------HHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCC
Confidence 0 011235667799999999862 3345566778899999999999
Q ss_pred eEee--------------------------cCeEEEEec-------------------CCCCCeEEEcCCCCccccchhH
Q 010043 292 VEES--------------------------QGARVIFIE-------------------GVNIPLIIVKSDGGFNYASTDL 326 (519)
Q Consensus 292 ~~~~--------------------------dGa~~~~~~-------------------g~~~d~Vl~ksDG~~tY~t~Di 326 (519)
+|.. ..+++++++ ++..|+||+|+||.|||. +
T Consensus 98 aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---l 174 (298)
T 1nzj_A 98 SYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---L 174 (298)
T ss_dssp EEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---H
T ss_pred cccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---e
Confidence 9973 136666543 123689999999999996 7
Q ss_pred HHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHH
Q 010043 327 AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (519)
Q Consensus 327 A~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll 406 (519)
|++.++. ..+++++| .|.||..+.+++..+.+++|+. .+.+.|++ +|.+.+|+|||||+|++ +++++.
T Consensus 175 a~vvdD~-~~giThvI--rG~D~l~~t~~q~~l~~alG~~------~p~~~H~p--ll~~~~g~KLSKR~g~~-~v~~~~ 242 (298)
T 1nzj_A 175 AVVVDDH-FQGVTEIV--RGADLIEPTVRQISLYQLFGWK------VPDYIHLP--LALNPQGAKLSKQNHAP-ALPKGD 242 (298)
T ss_dssp HHHHHHH-HTTCCEEE--EEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--BCCC--------------CCCSSC
T ss_pred eeeeEHH-hcCCCEEE--eCccccccHHHHHHHHHHcCCC------CCeEEEee--eeECCCCCcccccCCcc-ChhcCC
Confidence 9999887 68999998 5999999999998989999995 36889995 48788999999999987 677664
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCc
Q 010043 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 456 (519)
Q Consensus 407 ~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~ 456 (519)
+... ..+.+...|-.+.-. .++..+.+. =..++..|++++-+.+++
T Consensus 243 ~~~~--~~~~l~~lG~~~~~~-~~~~~~~~~-l~~~~~~f~~~~~~~~~~ 288 (298)
T 1nzj_A 243 PRPV--LIAALQFLGQQAEAH-WQDFSVEQI-LQSAVKNWRLTAVPESAI 288 (298)
T ss_dssp CHHH--HHHHHHHTTCCCCSC-GGGSCHHHH-HHHHHHTCCGGGSCCCSB
T ss_pred ccHH--HHHHHHHcCCCCCcc-cccCCHHHH-HHHHHHhCCHhhCCCCCC
Confidence 4422 344444444322110 111111111 114567788877776664
No 23
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.84 E-value=1.2e-20 Score=162.48 Aligned_cols=103 Identities=26% Similarity=0.514 Sum_probs=87.6
Q ss_pred chHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCC
Q 010043 7 NTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEM 85 (519)
Q Consensus 7 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~i~~~-~~~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~~l~~~~~ 85 (519)
.| ++++.|.+.|.+++...... .+..+.+++| +++|||||||+||.|||.+| ++|++||++|++.|+.+++
T Consensus 3 ~M-~i~~~l~~~i~~al~~~~~~-~~~~~~ve~p~~~~~GD~a~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~ 74 (109)
T 3gdz_A 3 AM-NIQALLSEKVSQALIAAGAP-ADCEPQVRQSAKVQFGDYQANGVMAVAKKLG------MAPRQLAEQVLSHLDLNGI 74 (109)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTCC-TTCCCCEEECSSGGGCSEEECCHHHHHHHTT------SCHHHHHHHHHHHCCCTTT
T ss_pred cc-CHHHHHHHHHHHHHHHcCCC-ccCCceeecCCCCCcceeecHHHHHHHHHhC------CCHHHHHHHHHHhcCcCCc
Confidence 46 68999999999999875211 1233445544 67999999999999999999 9999999999999987788
Q ss_pred eeeEEEecCcEEEEEeChhHHHHHHHHHHHcC
Q 010043 86 IESCSVAGPGFVNVVLSKNWMAKNIQKMLVDG 117 (519)
Q Consensus 86 v~~i~vagpGfIN~~l~~~~~~~~l~~~~~~~ 117 (519)
|++++++|||||||+|++++|.+.+.+++.+.
T Consensus 75 i~~vevagpGFINf~l~~~~~~~~l~~il~~~ 106 (109)
T 3gdz_A 75 ANKVEIAGPGFINIFLDPAFLADNVNRALQSE 106 (109)
T ss_dssp EEEEEEETTTEEEEEECHHHHHHHHHHHHTTC
T ss_pred EeEEEEeCCCeEEEEECHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999888654
No 24
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.83 E-value=1.3e-19 Score=192.87 Aligned_cols=247 Identities=17% Similarity=0.219 Sum_probs=176.5
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++|.+=|. |+|||+|||||+|++++....||- +....+--+.|...+ +
T Consensus 23 ~~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~----------R--------------- 71 (490)
T 4g6z_A 23 TRPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE----------R--------------- 71 (490)
T ss_dssp -CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG----------G---------------
T ss_pred CCCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc----------c---------------
Confidence 345777565 999999999999999987777773 333444445553210 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVID 284 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~es~~~~~v~~vi~ 284 (519)
. +..+.+.+.++++.||+..|. ...|.+.+...++++
T Consensus 72 ------------~-----------------------------~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~ 110 (490)
T 4g6z_A 72 ------------S-----------------------------SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLA 110 (490)
T ss_dssp ------------C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHH
T ss_pred ------------c-----------------------------cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHH
Confidence 0 112335667789999998753 234555566788999
Q ss_pred HHHHCCCeEee----------------cC------------------------eEEEEec--------------C-----
Q 010043 285 ELSKQGLVEES----------------QG------------------------ARVIFIE--------------G----- 305 (519)
Q Consensus 285 ~L~~~g~~~~~----------------dG------------------------a~~~~~~--------------g----- 305 (519)
+|.++|++|.. .| ..++++. |
T Consensus 111 ~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~ 190 (490)
T 4g6z_A 111 QMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEIS 190 (490)
T ss_dssp HHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEE
T ss_pred HHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeec
Confidence 99999998830 00 0122221 1
Q ss_pred --CCCCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEE
Q 010043 306 --VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGL 383 (519)
Q Consensus 306 --~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~ 383 (519)
.-.|+||.|+||+|||. +|..+++. ..++++|| +|.||....+++..+.++|||. .+.+.|++ +
T Consensus 191 ~~~~~D~Vl~R~DG~ptY~---lA~vVDD~-~mgIThVi--RG~D~l~~tprq~~l~~aLG~~------~P~f~Hlp--L 256 (490)
T 4g6z_A 191 NEELDDLVVARPDGTPMYN---FCVVVDDL-DMGITHVI--RGDDHVNNTPRQINILRALGGE------VPVYAHLP--T 256 (490)
T ss_dssp GGGCCCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHTTCC------CCEEEEEC--C
T ss_pred cccCCCeEEEeeCCCccch---hHHHHHHH-hcCCCEEE--eccccccChHHHHHHHHHcCCC------CCeEEEec--c
Confidence 12689999999999998 57888887 68999997 8999999999999999999995 36899996 4
Q ss_pred EEcCCCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhh-hhHHHHHhhcCCCCCCccccH
Q 010043 384 VLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSF 460 (519)
Q Consensus 384 V~~~~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~~e~~~~a~~vg-~~avry~~L~~~~~~~~~Fd~ 460 (519)
|++++|+|||||.|. +++.++.+.+. +...+.+..- +|+..+. +.+. .+.+..|++++-..++..||+
T Consensus 257 i~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~l----G~s~~~~----e~~s~~eli~~F~~~~~~~~~~~fd~ 327 (490)
T 4g6z_A 257 VLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARL----GWSHGDA----EIFTREQFVEWFDLEHLGKSPAQYDH 327 (490)
T ss_dssp EECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTS----SBCCTTC----CCCCHHHHHHHCCGGGBCSSCEECCH
T ss_pred eeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHh----CCCCCCc----cccCHHHHHhhCCHhhCCCCCCccCH
Confidence 888999999999994 79999998865 3345555532 3332110 0011 245788999999999999999
Q ss_pred HHHhcccC
Q 010043 461 DQMLNDKG 468 (519)
Q Consensus 461 ~~~~~~~g 468 (519)
+++.++|+
T Consensus 328 ~KL~~~N~ 335 (490)
T 4g6z_A 328 NKLNWLNN 335 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 25
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.82 E-value=8.4e-19 Score=199.71 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=108.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCCc-cCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchH
Q 010043 102 SKNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 180 (519)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q 180 (519)
++........+..++ ..+... ..++++..|....|||||.|||||+++.+++|+++|..|..||+|......+.+|..
T Consensus 8 ~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp 86 (862)
T 1gax_A 8 DPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIA 86 (862)
T ss_dssp CGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHH
T ss_pred ChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcH
Confidence 344444455544444 322211 124568999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHH
Q 010043 181 FGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVY 260 (519)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~ 260 (519)
+...+. +..... +.... .+ ..++|. +..++.++.+...+++.+
T Consensus 87 ~e~~ve---k~l~~~----g~~~~-----------~~-~~~~f~------------------~~~~~~~~~~~~~~~~q~ 129 (862)
T 1gax_A 87 TQVVVE---RLLLKE----GKTRH-----------DL-GREKFL------------------ERVWQWKEESGGTILKQL 129 (862)
T ss_dssp HHHHHH---TTTTTT----TSCCS-----------CC-CTTHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHc----CCChH-----------Hc-CHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 664332 111110 00000 01 012333 333445778888999999
Q ss_pred HHcCCceeeecc-----ccccCcHHHHHHHHHHCCCeEee
Q 010043 261 KRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEES 295 (519)
Q Consensus 261 ~~Lgi~fd~~~e-----s~~~~~v~~vi~~L~~~g~~~~~ 295 (519)
++||+.+||..+ ..|...+.+++.+|.++|++|+.
T Consensus 130 ~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg 169 (862)
T 1gax_A 130 KRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169 (862)
T ss_dssp HHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 999999998654 33556799999999999999963
No 26
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.81 E-value=4.1e-19 Score=203.77 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=98.9
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHH
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (519)
.++++|....|||||.+||||++|.+++|+|+|..+..||+|......+.+|.++...+... +- .+ .
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~----G~---~~-~----- 113 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK----GV---DR-K----- 113 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH----TC---CS-T-----
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc----CC---Cc-h-----
Confidence 45788889999999999999999999999999999999999999999999999998665321 10 00 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 010043 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (519)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~~ 281 (519)
.+ ...+|. +.++++++...+.+++.+++||+.+||..+ ..|...+.+
T Consensus 114 ---------~~-~~~~f~------------------~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~ 165 (917)
T 1ffy_A 114 ---------KM-STAEFR------------------EKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR 165 (917)
T ss_dssp ---------TT-CHHHHH------------------HHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHH
T ss_pred ---------hC-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHH
Confidence 00 011222 334456777888999999999999987543 234457899
Q ss_pred HHHHHHHCCCeEe
Q 010043 282 VIDELSKQGLVEE 294 (519)
Q Consensus 282 vi~~L~~~g~~~~ 294 (519)
++.+|.++|++|.
T Consensus 166 ~F~~l~~kGliYr 178 (917)
T 1ffy_A 166 IFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHcCCeEe
Confidence 9999999999996
No 27
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.81 E-value=2.6e-19 Score=191.72 Aligned_cols=243 Identities=16% Similarity=0.089 Sum_probs=168.1
Q ss_pred cCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHHh
Q 010043 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (519)
Q Consensus 135 ~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (519)
..|+|||+|||||+|++++ |.|.+.++.+..+--|.|... . .
T Consensus 6 FAPSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~--------------~----R--------------- 47 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR--------------E----R--------------- 47 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS--------------S----S---------------
T ss_pred eCCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc--------------c----c---------------
Confidence 4699999999999999988 455555677777777788422 0 0
Q ss_pred cccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCe
Q 010043 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 292 (519)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~es~~~~~v~~vi~~L~~~g~~ 292 (519)
. +..+.+.+.++++.||+..|. ..-|.+.+...+++++|.++|.+
T Consensus 48 ----~-----------------------------~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~A 94 (492)
T 2cfo_A 48 ----S-----------------------------RPEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLA 94 (492)
T ss_dssp ----C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSE
T ss_pred ----c-----------------------------chHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCc
Confidence 0 011224555677778877642 22344445566777777777777
Q ss_pred Eee-----------------------c-----------------Ce-EEEEec---------------------CCC-CC
Q 010043 293 EES-----------------------Q-----------------GA-RVIFIE---------------------GVN-IP 309 (519)
Q Consensus 293 ~~~-----------------------d-----------------Ga-~~~~~~---------------------g~~-~d 309 (519)
|.. + |. -++++. ..- .|
T Consensus 95 Y~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D 174 (492)
T 2cfo_A 95 YYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGD 174 (492)
T ss_dssp EEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSS
T ss_pred eEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCC
Confidence 730 1 21 122221 122 69
Q ss_pred eEEEcCC-----CCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE
Q 010043 310 LIIVKSD-----GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 384 (519)
Q Consensus 310 ~Vl~ksD-----G~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V 384 (519)
+||+|+| |.|||. +|..++.. ..+.+++| .|.||..+.+++..+.+++|+. .+.|.|++ +|
T Consensus 175 ~Vl~R~d~~p~~G~PtY~---la~vvDD~-~~gIthvi--RG~D~~~~t~~q~~l~~alg~~------~P~~~H~p--li 240 (492)
T 2cfo_A 175 MVIARAAPRGEIGYPLYN---LVVVVDDI-AMGITDVI--RGEDHIGNTPKQILLYEALGAT------PPNFAHTP--LI 240 (492)
T ss_dssp EEEECSCCTTSCCCBCHH---HHHHHHHH-HTTCSEEE--EEGGGTTHHHHHHHHHHHTTCC------CCEEEEEC--CE
T ss_pred eEEEEecCCCCCCceeeh---hhhhhhhh-cCCCCeEE--EchhhhhCHHHHHHHHHHcCCC------CceEEEee--eE
Confidence 9999999 999998 57778887 68999996 9999999999999999999995 36899995 58
Q ss_pred EcCCCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010043 385 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (519)
Q Consensus 385 ~~~~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~ 462 (519)
++.+|+|||||.|++ ++.++++.+. +..++.+..-|-.+.-+..++..+ -+.+..|++..-+.++..||+++
T Consensus 241 l~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~-----~e~i~~f~~~~i~~~~~~~d~~k 314 (492)
T 2cfo_A 241 LNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTL-----DLAAKHFSFERINKAGARFDWDK 314 (492)
T ss_dssp ECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCH-----HHHHHHCCSTTBCSSCEECCHHH
T ss_pred ECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCH-----HHHHhhcChhhcCccccccCHHH
Confidence 889999999999987 8999998754 334455543321110000111111 13578899999999999999999
Q ss_pred HhcccC
Q 010043 463 MLNDKG 468 (519)
Q Consensus 463 ~~~~~g 468 (519)
+..+|+
T Consensus 315 l~~~N~ 320 (492)
T 2cfo_A 315 LNWLNR 320 (492)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 28
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.80 E-value=3.7e-19 Score=202.82 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=100.4
Q ss_pred CCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHH
Q 010043 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (519)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (519)
++++.+|....|||+|+|||||+|+.+++|+++|..+..||+|.+....+++|.++...+.. ..+. .+...+.+
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k---~l~~---~~~~~~~~ 109 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEK---KLGL---KSKREIEA 109 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHH---HTTC---CSHHHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHH---Hhcc---cccchHhh
Confidence 34578888999999999999999999999999999999999999999999999999866532 1111 00111111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 010043 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (519)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-----s~~~~~v~ 280 (519)
+ |.++..+.++++++.+.+.+++.+++||+.+||..+ ..|...++
T Consensus 110 ~------------------------------g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 110 Y------------------------------GIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp H------------------------------CHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred c------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence 1 222334455566777888899999999977776432 34556799
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
+++.+|.++|++|+
T Consensus 160 ~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 160 WSLKNLFDRGLLYR 173 (821)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCeee
Confidence 99999999999986
No 29
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.79 E-value=1e-18 Score=186.06 Aligned_cols=139 Identities=17% Similarity=0.097 Sum_probs=106.2
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||+|+||.|||.. |..++.. ..+++++| +|.||..|.+++..+.+++|+. .+.+.|++ ++++.
T Consensus 174 ~D~Vl~R~dg~PtY~~---a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~------~p~~~h~~--li~~~ 239 (468)
T 1j09_A 174 PDVVLLKSDGYPTYHL---ANVVDDH-LMGVTDVI--RAEEWLVSTPIHVLLYRAFGWE------APRFYHMP--LLRNP 239 (468)
T ss_dssp CCCEEECTTSCBCHHH---HHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEEC--CCBCT
T ss_pred CCeEEEecCCCeeehh---HHHHHHH-HCCCCeEE--EChhhhhhHHHHHHHHHHcCCC------CCeEEEee--eeeCC
Confidence 6899999999999984 6667776 57999995 9999999999999999999995 25788985 58889
Q ss_pred CCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~~~~ 465 (519)
+|+|||||+|+. +++++++.+. +...+.+..-|-.+.-. .++..+ .+.+..|++..-+.++..||++++..
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~~~-----~el~~~f~~~~~~~~~~~~d~~kl~~ 312 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIFTL-----EEFIQAFTWERVSLGGPVFDLEKLRW 312 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCCCH-----HHHHHHCCGGGCCCSCCBCCHHHHHH
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCccc-ccCCCH-----HHHHhhCChhhcCccccccChHHhhh
Confidence 999999999988 8999998754 33444444332111000 011111 13577899999999999999999998
Q ss_pred cc
Q 010043 466 DK 467 (519)
Q Consensus 466 ~~ 467 (519)
+|
T Consensus 313 ~N 314 (468)
T 1j09_A 313 MN 314 (468)
T ss_dssp HH
T ss_pred hc
Confidence 86
No 30
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.79 E-value=9.2e-19 Score=187.26 Aligned_cols=137 Identities=16% Similarity=0.114 Sum_probs=108.8
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHc-----CCCCCCCCCCCcEEEEEeE
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA-----GWLSADDSTYPKASHVGFG 382 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~l-----g~~~~~~~~~~~~~Hv~~g 382 (519)
.|+||+|+||.|||. +|..+++. ..+++++| +|.||..+.+++..+.++| |+. .+.+.|+++
T Consensus 183 ~D~Vi~R~Dg~ptY~---lA~vVDD~-~mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~------~P~~~h~pl- 249 (498)
T 2ja2_A 183 PDFALTRASGDPLYT---LVNPCDDA-LMKITHVL--RGEDLLPSTPRQLALHQALIRIGVAER------IPKFAHLPT- 249 (498)
T ss_dssp CCCBSBCTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCC------CCEEEEECC-
T ss_pred CcceeEccCCCcchh---hHHHHHhh-hcCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCC------CCeEEEeee-
Confidence 689999999999998 57778887 68999996 9999999999999999999 995 368999965
Q ss_pred EEEcCCCcceeeecCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCH---HHHHHHHHHhhhhHHHHHhhcCCCCCCcc
Q 010043 383 LVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTE---EELEQTAEAVGYGAAKYFDLKNNRLTNYT 457 (519)
Q Consensus 383 ~V~~~~g~kmSkR~G~~v~l~dll~e~~--~~a~~~i~~~~~~~~~~~---~e~~~~a~~vg~~avry~~L~~~~~~~~~ 457 (519)
+++.+|+|||||+|+ ++++++++.+. +...+.+..- +|+. .++..+. +.+..|+++.-+.++..
T Consensus 250 -il~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l----G~s~~~~~e~~s~~-----eli~~f~~~~~~~~~a~ 318 (498)
T 2ja2_A 250 -VLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL----GWSIADDHDLFGLD-----EMVAAFDVADVNSSPAR 318 (498)
T ss_dssp -EECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS----SCCSCSSCCCCCHH-----HHHHHCCGGGCCCSCEE
T ss_pred -eECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh----CCCCCcccccCCHH-----HHHhhCChhhcCccccc
Confidence 888999999999997 59999999754 3345555432 2321 1111111 34889999999999999
Q ss_pred ccHHHHhcccC
Q 010043 458 FSFDQMLNDKG 468 (519)
Q Consensus 458 Fd~~~~~~~~g 468 (519)
||++++..+|+
T Consensus 319 fd~~kL~~~N~ 329 (498)
T 2ja2_A 319 FDQKKADALNA 329 (498)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHhhH
Confidence 99999999964
No 31
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.78 E-value=9.5e-19 Score=188.91 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=110.7
Q ss_pred CCeEEEcCCCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 010043 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (519)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~ 387 (519)
.|+||.|+||.|||. +|..++.. ..+.+||| +|.||....++...+.++|||. .|.+.|++ +|+++
T Consensus 204 ~D~vi~r~dg~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~sTp~q~~l~~alg~~------~P~y~H~p--li~~~ 269 (512)
T 4gri_A 204 PDPVILKSDGLPTYH---LANVVDDY-LMKITHVL--RAQEWVSSGPLHVLLYKAFKWK------PPIYCHLP--MVMGN 269 (512)
T ss_dssp SSCEEECTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEEC--CCBCT
T ss_pred CceEEEecCCccccc---ccceeccc-ccCCceec--cccccccccHHHHHHHHHcCCC------CCeEEecc--hhccc
Confidence 478999999999996 68888887 68999997 9999999999998999999995 47899995 58999
Q ss_pred CCcceeeecCCcccHHHHHHHHHH--HHHHHHHHhcCCCCCCHH---HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010043 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTEE---ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (519)
Q Consensus 388 ~g~kmSkR~G~~v~l~dll~e~~~--~a~~~i~~~~~~~~~~~~---e~~~~a~~vg~~avry~~L~~~~~~~~~Fd~~~ 462 (519)
+|+|||||.| ..+++++.+++.. +..+.+..-| |+.. |+..+ -+.+.+|++++-..++..||+++
T Consensus 270 ~g~kLSKR~~-~~~v~~~~~~G~lPeAl~NyLalLG----ws~~~~~Eifs~-----~eli~~Fdl~~v~ks~a~fD~~K 339 (512)
T 4gri_A 270 DGQKLSKRHG-STALRQFIEDGYLPEAIINYVTLLG----WSYDDKREFFSK-----NDLEQFFSIEKINKSPAIFDYHK 339 (512)
T ss_dssp TSSBCCTTTS-CCBHHHHHHHTCCHHHHHHHHHHSS----BCSSSSCCCCCH-----HHHHHHCCGGGBCSSCCBCCHHH
T ss_pred cccccCcccc-cccHHHHHHcCCChHHHHHHHHHhC----CCCcccchhhhH-----HHHHHHHHhcCCCCCCccccHHH
Confidence 9999999999 5689999999873 4566665432 2211 11111 23577899999999999999999
Q ss_pred HhcccC
Q 010043 463 MLNDKG 468 (519)
Q Consensus 463 ~~~~~g 468 (519)
+.++|+
T Consensus 340 L~~~N~ 345 (512)
T 4gri_A 340 LDFFNS 345 (512)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 32
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.77 E-value=2.9e-17 Score=187.69 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=91.0
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++..|--..|||+|++||||+|+.+++|+|+|+++..||+|......+++|.++...+.. .+
T Consensus 33 ~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k-----------~g------- 94 (878)
T 2v0c_A 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-----------FG------- 94 (878)
T ss_dssp -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHH-----------TT-------
T ss_pred CCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHH-----------cC-------
Confidence 455555578999999999999999999999999999999999999999999987643210 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGV 282 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----es~~~~~v~~v 282 (519)
. ++ +++++.....|++++++||+.+||.. +..|...+.++
T Consensus 95 -----------~------------------~~------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~ 139 (878)
T 2v0c_A 95 -----------V------------------HP------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWI 139 (878)
T ss_dssp -----------C------------------CH------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHH
T ss_pred -----------C------------------CH------HHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHH
Confidence 0 01 23467778899999999999999743 33455678999
Q ss_pred HHHHHHCCCeEe
Q 010043 283 IDELSKQGLVEE 294 (519)
Q Consensus 283 i~~L~~~g~~~~ 294 (519)
+.+|.++|++|+
T Consensus 140 f~~L~~kGliY~ 151 (878)
T 2v0c_A 140 FLKMWEKGLAYR 151 (878)
T ss_dssp HHHHHHTTCEEE
T ss_pred HHHHHHCCCEEE
Confidence 999999999986
No 33
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.76 E-value=2.4e-17 Score=187.36 Aligned_cols=140 Identities=21% Similarity=0.157 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCCc-cCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchH
Q 010043 102 SKNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 180 (519)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q 180 (519)
++..+....++..++...+... ...+++..|--.-|||+|+|||||+|+.+++|+|+|++|..||+|....+.+|+|.+
T Consensus 26 ~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glp 105 (880)
T 4arc_A 26 RPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLP 105 (880)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTH
T ss_pred ChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcH
Confidence 3444555555444443332221 123456667667899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHH
Q 010043 181 FGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVY 260 (519)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~ 260 (519)
+...+.. .+. .| +++++.....|++.+
T Consensus 106 ie~~a~~-----------~g~------------------~p------------------------~~~~~~~i~~~~~~l 132 (880)
T 4arc_A 106 AEGAAVK-----------NNT------------------AP------------------------APWTYDNIAYMKNQL 132 (880)
T ss_dssp HHHHHHH-----------TTS------------------CH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------cCC------------------CH------------------------HHHHHHHHHHHHHHH
Confidence 8644311 000 01 123455667888899
Q ss_pred HHcCCceeeecc-----ccccCcHHHHHHHHHHCCCeEe
Q 010043 261 KRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 294 (519)
Q Consensus 261 ~~Lgi~fd~~~e-----s~~~~~v~~vi~~L~~~g~~~~ 294 (519)
++||+.+||..+ ..|...+++++.+|.++|++|+
T Consensus 133 ~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 133 KMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp HHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999987432 3455678899999999998885
No 34
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.69 E-value=5.6e-17 Score=174.14 Aligned_cols=227 Identities=15% Similarity=0.127 Sum_probs=150.0
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++|+. =..|+|||+|||||+|++++-..+|| +|.+...--++|.... +
T Consensus 95 g~v~t-RFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~----------R---------------- 142 (553)
T 3aii_A 95 GEVVL-RFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR----------R---------------- 142 (553)
T ss_dssp SCCEE-EECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG----------G----------------
T ss_pred CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc----------c----------------
Confidence 44555 56799999999999999998555554 6777777778884321 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~es~~~~~v~~vi~~L 286 (519)
.. ..+.+.|.++++.||+..|. ..-|.|.+...++++.|
T Consensus 143 -----------~~-----------------------------~e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~L 182 (553)
T 3aii_A 143 -----------VD-----------------------------PEAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKL 182 (553)
T ss_dssp -----------CC-----------------------------TTHHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHH
T ss_pred -----------cc-----------------------------HHHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHH
Confidence 00 11234556688888887752 22455556677888888
Q ss_pred HHCCCeEee--------------------------------------cCeEEEEecC-------CCCCeEEEcC------
Q 010043 287 SKQGLVEES--------------------------------------QGARVIFIEG-------VNIPLIIVKS------ 315 (519)
Q Consensus 287 ~~~g~~~~~--------------------------------------dGa~~~~~~g-------~~~d~Vl~ks------ 315 (519)
.++|++|.. +|..++++.. .-.|+|++|.
T Consensus 183 i~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp 262 (553)
T 3aii_A 183 IERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHP 262 (553)
T ss_dssp HHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBT
T ss_pred HHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCC
Confidence 888888841 1223455532 1247888886
Q ss_pred ---CCCccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcce
Q 010043 316 ---DGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (519)
Q Consensus 316 ---DG~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~km 392 (519)
||--.|.+=|+|..++.. ..|.+++| .|.||..+-++...+.+++|+. .+.+.|++ +|+ .+|+||
T Consensus 263 ~~Gd~~~g~PtYhfa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~------~P~y~H~~--~L~-~~g~KL 330 (553)
T 3aii_A 263 RTGTRYRVYPMMNFSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWE------PPEFIHYG--RLK-MDDVAL 330 (553)
T ss_dssp TTBTSCCEEECHHHHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCC------CCEEECCC--CBC-------
T ss_pred ccCCCceeeeeeeeeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCC------CCeEEEee--EEe-cCCcee
Confidence 321123344578878876 57999997 9999999999888888999984 35677984 564 579999
Q ss_pred eeecCC---------------cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCc
Q 010043 393 RTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNY 456 (519)
Q Consensus 393 SkR~G~---------------~v~l~dll~e~~~~a~~~i~~~~~~~~~~~~e~~~~a~~vg~~avry~~L~~~~-~~~~ 456 (519)
|||+|+ +.|+.+|++.+ +.++|+|.|+++... .++.
T Consensus 331 SKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG----------------------------~~PeaIr~fl~~~G~s~~~~ 382 (553)
T 3aii_A 331 STSGAREGILRGEYSGWDDPRLGTLRAIARRG----------------------------IRPEAIRKLMVEIGVKIADS 382 (553)
T ss_dssp -CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT----------------------------CCHHHHHHHHHHHTTCSSCB
T ss_pred chhhhhhhccccccccccCcchHHHHHHHHcC----------------------------CCHHHHHHHHHhcCCCCccc
Confidence 999997 66788887763 467899999999887 6899
Q ss_pred cccHHHHhcc
Q 010043 457 TFSFDQMLND 466 (519)
Q Consensus 457 ~Fd~~~~~~~ 466 (519)
.|||+.+.+.
T Consensus 383 ~~s~~~L~~~ 392 (553)
T 3aii_A 383 TMSWKKIYGL 392 (553)
T ss_dssp CCCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9999988665
No 35
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.63 E-value=1.8e-14 Score=166.67 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=100.2
Q ss_pred ceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccccHHHHH
Q 010043 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (519)
Q Consensus 128 ~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (519)
++.+|...-|||||.|||||++|.+++|+++|..+..||+|.+....+.+|.++...+..+.. ++.+. +
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~--------~~~~~--~- 102 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--------RDPKT--I- 102 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT--------TCHHH--H-
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc--------cchhH--H-
Confidence 678899999999999999999999999999999999999999999999999999866543211 01110 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-------ccccCcHH
Q 010043 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-------SFYNPYIP 280 (519)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~e-------s~~~~~v~ 280 (519)
+.+. +.+.-.. +.+.++. + .+++++.+...+++.+++||+.+||..+ ..|...+.
T Consensus 103 ~~~~---~~~gi~~-------~~~~~~~--~------~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~ 164 (967)
T 1wz2_A 103 WIYR---DVYKVPE-------EILWTFE--D------PINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE 164 (967)
T ss_dssp HHHH---TTSCCCH-------HHHHGGG--S------HHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHH
T ss_pred HHHH---HhcCCCH-------HHHHHHH--H------HHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHH
Confidence 0111 1111110 0111111 1 2345788889999999999999998544 33456789
Q ss_pred HHHHHHHHCCCeEe
Q 010043 281 GVIDELSKQGLVEE 294 (519)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (519)
.++.+|.++|++|.
T Consensus 165 ~~F~~L~~kGliyr 178 (967)
T 1wz2_A 165 WQFWKLKEKGYIVK 178 (967)
T ss_dssp HHHHHTTTTTCEEE
T ss_pred HHHHHHHHCCCEEE
Confidence 99999999999985
No 36
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.58 E-value=2.2e-14 Score=154.15 Aligned_cols=264 Identities=12% Similarity=0.054 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHHH
Q 010043 104 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 183 (519)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~~ 183 (519)
.|+...+.+-+..+.. ++|++ =..|+|||+|||||+|++++-..+|| +|.+..+--+.|....
T Consensus 9 ~fi~~~i~~dl~~~~~--------~~v~t-RFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~--- 71 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH--------TTVHT-RFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV--- 71 (553)
T ss_dssp CHHHHHHHHHHHHTSC--------SSCEE-EECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---
T ss_pred hHHHHHHHhHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch---
Confidence 4666666666655432 23444 56799999999999999999766666 5566666667774320
Q ss_pred HHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHc
Q 010043 184 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 263 (519)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~L 263 (519)
+ . ...+.+.+.++++.|
T Consensus 72 -------R---------------------------~-----------------------------~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 72 -------K---------------------------E-----------------------------DIEYVESIKNDVEWL 88 (553)
T ss_dssp -------G---------------------------C-----------------------------CHHHHHHHHHHHHHT
T ss_pred -------h---------------------------c-----------------------------CHHHHHHHHHHHHHc
Confidence 0 0 111223445566666
Q ss_pred CCceee--eccccccCcHHHHHHHHHHCCCeEee--------------------------------------------cC
Q 010043 264 RVDLEE--KGESFYNPYIPGVIDELSKQGLVEES--------------------------------------------QG 297 (519)
Q Consensus 264 gi~fd~--~~es~~~~~v~~vi~~L~~~g~~~~~--------------------------------------------dG 297 (519)
|+..+. ..-|.|.+...+.+++|.++|++|.. +|
T Consensus 89 Gl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g 168 (553)
T 1qtq_A 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 168 (553)
T ss_dssp TCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCC
Confidence 666531 12233333444556666666666631 22
Q ss_pred eEEEEec----C---CCCCeEEEc---------CCC---CccccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHH
Q 010043 298 ARVIFIE----G---VNIPLIIVK---------SDG---GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 358 (519)
Q Consensus 298 a~~~~~~----g---~~~d~Vl~k---------sDG---~~tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~ 358 (519)
..+++.. . .-.|+||+| +|+ .|+|. +|..++.. ..+.+++| .|.+|..|-+....
T Consensus 169 ~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~ 242 (553)
T 1qtq_A 169 KACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDW 242 (553)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHH
T ss_pred ceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHH
Confidence 3344432 0 124789998 663 67776 67778876 68999997 99999999998888
Q ss_pred HHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCC---------------cccHHHHHHHHH--HHHHHHHHHhc
Q 010043 359 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAK--NRSKAVLIERG 421 (519)
Q Consensus 359 i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~---------------~v~l~dll~e~~--~~a~~~i~~~~ 421 (519)
+.+++|+. ..++..|. +.+ +.+|+|||||+|+ +.|+.+|++.+. +..++.+..-|
T Consensus 243 l~~alg~~-----~~P~~~~f--~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG 314 (553)
T 1qtq_A 243 VLDNITIP-----VHPRQYEF--SRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIG 314 (553)
T ss_dssp HHHTSCCS-----CCCEEEEE--CCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHcCCC-----CCCCeEEE--Eee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcC
Confidence 88999984 12333344 445 4679999999986 678999998754 22344443332
Q ss_pred CCCCCCHHHHHHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhccc
Q 010043 422 KDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLNDK 467 (519)
Q Consensus 422 ~~~~~~~~e~~~~a~~vg~~avry~~L~~-~~~~~~~Fd~~~~~~~~ 467 (519)
-...-+..|+..+. ..+| |+|.. .++++..||+.++...|
T Consensus 315 ~s~~~~~~e~~~le-----~~~~-~~l~~~~~r~~av~d~~Kl~~~N 355 (553)
T 1qtq_A 315 VTKQDNTIEMASLE-----SCIR-EDLNENAPRAMAVIDPVKLVIEN 355 (553)
T ss_dssp CCSSCCCBCHHHHH-----HHHH-HHHHHHSCEECEESSEEEEEBTT
T ss_pred CCCCccccchhhHH-----HHHH-hCcccccccccceeccceEEEEc
Confidence 11111101122211 1344 45554 45666667766665554
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.56 E-value=2.3e-14 Score=160.10 Aligned_cols=217 Identities=13% Similarity=0.030 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHHH
Q 010043 103 KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182 (519)
Q Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~~~~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~~ 182 (519)
+.|+...+..-+..+.. ++|+. =..|+|||+|||||+|++++-..+|| +|.+..+--+.|....
T Consensus 48 ~~fi~~ii~~dl~~g~~--------~~v~t-RFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-- 111 (851)
T 2hz7_A 48 PNFITEIIERDLEAGKY--------PRVVT-RFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-- 111 (851)
T ss_dssp CCHHHHHHHHHHHTTSC--------SSCEE-EECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT--
T ss_pred HHHHHHHHHHHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc--
Confidence 35777777666654321 23443 55799999999999999998665555 5666777777774220
Q ss_pred HHHHHHHhhCCCCCccccccHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010043 183 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 262 (519)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~ 262 (519)
+ . ...+.+.|.++++.
T Consensus 112 --------R---------------------------~-----------------------------~~e~~~~IledL~w 127 (851)
T 2hz7_A 112 --------L---------------------------A-----------------------------RQEYVDSIADDLKW 127 (851)
T ss_dssp --------T---------------------------C-----------------------------CHHHHHHHHHHHHH
T ss_pred --------c---------------------------c-----------------------------cHHHHHHHHHHHHH
Confidence 0 0 11223455667788
Q ss_pred cCCcee--eeccccccCcHHHHHHHHHHCCCeEee--------------------------------------------c
Q 010043 263 LRVDLE--EKGESFYNPYIPGVIDELSKQGLVEES--------------------------------------------Q 296 (519)
Q Consensus 263 Lgi~fd--~~~es~~~~~v~~vi~~L~~~g~~~~~--------------------------------------------d 296 (519)
||+..+ ...-|.|.+...++++.|.++|++|.. +
T Consensus 128 LGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~ 207 (851)
T 2hz7_A 128 LGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFAD 207 (851)
T ss_dssp HTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred cCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCccc
Confidence 888763 122355555667778888888877741 0
Q ss_pred CeEEEEec----C---CCCCeEEEcCCC-------Cc--cccchhHHHHHhhhhhcCCCeEEEEecCCccccHHHHHHHH
Q 010043 297 GARVIFIE----G---VNIPLIIVKSDG-------GF--NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAA 360 (519)
Q Consensus 297 Ga~~~~~~----g---~~~d~Vl~ksDG-------~~--tY~t~DiA~~~~r~~~~~~d~~I~V~g~~q~~hf~~~~~i~ 360 (519)
|..++++. . .-.|+||+|++. ++ .|-+=++|..++.. ..+.+|+| .|.||..|-+....+.
T Consensus 208 g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~-~~GITHVi--RG~D~~~n~~~q~~l~ 284 (851)
T 2hz7_A 208 GEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDA-IEGVTHSM--CSLEFVDNRAIYDWLM 284 (851)
T ss_dssp TSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHH-HHTCSEEE--EEGGGTTTHHHHHHHH
T ss_pred CCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeec-cCCcceee--cchhhhhChHHHHHHH
Confidence 12233321 0 114789999872 11 13333578778776 57999997 9999999999888888
Q ss_pred HHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCC---------------cccHHHHHHHHH
Q 010043 361 KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAK 410 (519)
Q Consensus 361 ~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~---------------~v~l~dll~e~~ 410 (519)
+++|+. ..++..|. +.+. .+|.|||||+|+ +.++.+|++.+.
T Consensus 285 ~alG~~-----~~P~~~~f--ahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy 341 (851)
T 2hz7_A 285 EKLNFD-----PRPHQYEF--GRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV 341 (851)
T ss_dssp HHTTCS-----SCCEEEEE--CCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTC
T ss_pred HHcCCC-----CCCCceEE--EEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcCC
Confidence 999984 11333333 4454 468899999986 568899988753
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.24 E-value=9.2e-07 Score=89.98 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=51.4
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~dll~e 408 (519)
.+++|.++ +|.||..|+..-..+++.+|+. .+...|.+ ++.+.+|+|||||.||+|.|.|--++
T Consensus 168 ~~~~~~v~--~G~DQ~~~~~l~rdla~~~~~~------~p~~l~~p--ll~~l~G~KMSKS~~n~I~l~d~p~~ 231 (323)
T 2cyb_A 168 HLGVDLAV--GGIDQRKIHMLARENLPRLGYS------SPVCLHTP--ILVGLDGQKMSSSKGNYISVRDPPEE 231 (323)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCBCTTSSBCCTTTTCSCBTTCCHHH
T ss_pred hcCCCEEE--echhhHHHHHHHHHHHHhcCCC------CceEEecC--cccCCCCCcccCCcCceeCCCCCHHH
Confidence 46888775 9999999999888888889884 24566664 58788899999999999999875443
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=6.4e-06 Score=85.95 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=42.1
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCC-CcceeeecCCc-ccHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEV-VRLVDLLDE 408 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~-g~kmSkR~G~~-v~l~dll~e 408 (519)
.++++.++ +|.||..|+.....+++.+|+. .+...|.+ +|.+.+ |+|||||.|+. |.|.|=-++
T Consensus 180 ~~~~~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gl~~G~KMSKS~~ns~I~L~D~p~~ 245 (394)
T 2dlc_X 180 FLDVDCQF--GGVDQRKIFVLAEENLPSLGYK------KRAHLMNP--MVPGLAQGGKMSASDPNSKIDLLEEPKQ 245 (394)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCCC----------CCSCBTTCCHHH
T ss_pred hhCCCEEe--cCccHHHHHHHHHHHHHHcCCC------CCEEEecc--cccCCCCCCcCCCCCCCCEEeccCCHHH
Confidence 46888776 9999999999998999999984 35667765 577778 99999999996 888764333
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.95 E-value=1e-05 Score=83.77 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=42.2
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCC-cccHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVDL 405 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~-~v~l~dl 405 (519)
.+++|.++ +|.||..|+.....+++.+|+. .+...|.+ +|.+.+|+|||||.|+ .|.|.|=
T Consensus 176 ~~~a~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gldG~KMSKS~~ns~I~L~d~ 237 (372)
T 1n3l_A 176 YLKVDAQF--GGIDQRKIFTFAEKYLPALGYS------KRVHLMNP--MVPGLTGSKMSSSEEESKIDLLDR 237 (372)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCSSCC-------CCSCBTTCC
T ss_pred HhcCCEEE--cChhHHHHHHHHHHHHHHcCCC------CCEEEecC--ccCCCCcccccCCCCCCeEeccCC
Confidence 36788776 9999999999988889999884 24556664 5778889999999999 7888654
No 41
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.47 E-value=0.00017 Score=74.42 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=46.3
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCC-----------------Ccceeee-c
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-----------------GKRLRTR-F 396 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~-----------------g~kmSkR-~ 396 (519)
.+++|.++ +|.||..|+..-..+++.+|+. .+...|.+ +|.+-+ |+||||| .
T Consensus 175 ~~~~~~v~--~G~DQ~~~~~l~rdla~r~~~~------~p~~l~~~--ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 175 YMDLDIAL--GGMDQRKAHMLARDVAEKLGRK------KPVAIHTP--IISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHHTTTTCC------CCEEEEEC--CCBCSSCC----------------CBCCSSSG
T ss_pred hcCCCEEe--ccchHHHHHHHHHHHHHHcCCC------Cceeeccc--eeeCCCcccccccccccccccccccccCCCCC
Confidence 46788776 9999999999888889888874 23456654 466665 7899999 6
Q ss_pred CCcccHHHH
Q 010043 397 SEVVRLVDL 405 (519)
Q Consensus 397 G~~v~l~dl 405 (519)
|+.|.|.|=
T Consensus 245 ~~~I~L~d~ 253 (364)
T 2cya_A 245 ETAVFVVDS 253 (364)
T ss_dssp GGSCBTTCC
T ss_pred CCEeeccCC
Confidence 888988764
No 42
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.28 E-value=0.00056 Score=69.08 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=42.1
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC-cceeeecCCcccHHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDEA 409 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g-~kmSkR~G~~v~l~dll~e~ 409 (519)
.++++.++ +|.||..|+.....+ .- + .+...|.+ +|.+-+| +|||||.|+.|.|.|=-++.
T Consensus 161 ~~~~~~v~--~G~DQ~~~~~l~R~i----~~-~-----~~~~~~~~--~l~~l~G~~KMSKS~~~~I~L~d~~~~i 222 (314)
T 2zp1_A 161 YLGVDVAV--GGMEQRKIHMLAREL----LP-K-----KVVCIHNP--VLTGLDGEGKMSSSKGNFIAVDDSPEEI 222 (314)
T ss_dssp HHTCSEEE--EEGGGHHHHHHHHHH----SS-S-----CCEEEEEC--CCBCTTSSSBCCTTTTCSCBTTCCHHHH
T ss_pred hhCCCEEE--cChhHHHHHHHHHHh----cC-C-----CcEEeecc--ccccCCcccccCCCCcceecCCCCHHHH
Confidence 35788776 999999888543332 21 1 23456654 4777789 79999999999987654443
No 43
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.99 E-value=0.0018 Score=71.97 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-cceeeecC-CcccHHHHHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFS-EVVRLVDLLDE 408 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~G-~~v~l~dll~e 408 (519)
+++|.+. +|.||..|+..-..++..+|..+ .+.+.|.+ +|.+- +| +|||||.| +.|.|.|=-++
T Consensus 182 ~~ad~vp--vG~DQ~~~l~l~Rdla~r~n~~~-----~p~~l~~~--~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 248 (690)
T 3p0j_A 182 LKADICQ--LGLDQRKVNMLAREYCDLIGRKL-----KPVILSHH--MLAGLKQGQAKMSKSDPDSAIFMEDTEED 248 (690)
T ss_dssp TTCSEEC--CBGGGHHHHHHHHHHHHHTTCCC-----CCEEEEBC--CCCCSSTTCSSCBTTBGGGSCBTTCCHHH
T ss_pred hCCCEEe--ccccHHHHHHHHHHHHHHhCCCC-----CceEeecC--eeecCCCCCcCCCCCCCCCeeeccCCHHH
Confidence 5778664 99999999998888999998742 23444543 56665 78 49999998 68888654344
No 44
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.41 E-value=0.0013 Score=67.86 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=42.6
Q ss_pred eEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeec-CCcccHHHH
Q 010043 340 WIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDL 405 (519)
Q Consensus 340 ~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~-G~~v~l~dl 405 (519)
..+--+|.||..|+.--..++..+|.... -..+...|.. ++.+-+|+||||+. ++.|.|.|=
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~~~--~~pgldG~KmS~S~~ns~I~l~D~ 271 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVE--LERPASTYHK--LQPGLDGRKMSSSRPDSTIFLTDP 271 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEEEC--CCBCTTSSBCCTTSGGGSCBTTCC
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCccc--ccChhhhhhc--ccCCCCCCccCCCCCCcccccCCC
Confidence 33445899999999988889988873211 1124455554 46677899999887 557777543
No 45
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.07 E-value=0.01 Score=60.73 Aligned_cols=59 Identities=12% Similarity=-0.032 Sum_probs=34.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
+++|.++ +|.||..|+..-..+++.+|.. .+...+. -++.+.+|+|||||.||.|.|.|
T Consensus 209 ~~~~i~p--~G~DQ~~~i~l~rdla~r~n~~------~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQL--GGSDQLGNIMSGYEFINKLTGE------DVFGITV--PLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEEE--EEGGGHHHHHHHHHHHHHHSSC------CCEEEEE--CCCC-------------CCBSST
T ss_pred CCCcEEe--ccHHHHHHHHHHHHHHHHhCCC------Ccccccc--ccccCCCcccccCCCCCeeeccC
Confidence 4788665 9999999999998999999873 1233333 45777789999999999999887
No 46
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.46 E-value=0.016 Score=58.64 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=44.8
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 337 ~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
+++ |=++|.||..|+..-..+++.+|..+ + .++..-++.+.+|+|||||.||.|.|.|
T Consensus 191 ~~~--v~~gG~DQ~~~i~l~rdla~r~n~~~------~--~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVV--LCIGGSDQWGNITSGIDLTRRLHQNQ------V--FGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEE--EEEECTTCHHHHHHHHHHHHHHHCCC------C--EEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred Cce--EEecCchhHHHHHHHHHHHHHhCCCC------c--eeeccCccCCCCcccccCCCCCeeeccC
Confidence 555 55689999999999888998888631 2 2233345777789999999999999987
No 47
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.38 E-value=0.024 Score=59.49 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=46.4
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCC-cccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~-~v~l~d 404 (519)
++++.++ +|.||..|+..-..+++.+|..+ +...+. -++.+.+|+|||||.|| .|.|+|
T Consensus 186 ~~~~i~~--gG~DQ~~ni~lgrdlarr~~~~~------~~~l~~--plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 186 HGCTLQI--GGADQWGNIIAGVRLVRQKLGAT------VHALTV--PLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HCCCEEE--ECSTTHHHHHHHHHHHHHHHCCC------CEEEEC--CCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCCcEEe--ccHHHHHHHHHHHHHHHHhCCCC------cccccc--ccccCCCcCcCCCCCCCCeEEccC
Confidence 4788665 99999999998888898888731 233333 45778899999999999 898877
No 48
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=93.92 E-value=0.028 Score=58.80 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=45.8
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~l-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
++++.+ ++|.||..|+..-..+++.+ +.. .+...+. -++.+.+|+|||||.||.|.|+|
T Consensus 185 ~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~------~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 185 LNCKIQ--VGGSDQWGNITSGIELMRRMYGQT------DAYGLTI--PLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHCCC------CCEEEEE--CCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------CeeEeec--ccccCCccccccCCCCCeEecCC
Confidence 366544 49999999999988889888 763 1233444 45778899999999999999887
No 49
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.89 E-value=0.037 Score=58.05 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=46.3
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-ceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~~v~l~d 404 (519)
+++|.++ +|.||..|+..-..+++.+|..+ +...|. -++.+.+|. |||||.||.|.|+|
T Consensus 186 l~~~l~~--gG~DQ~~ni~l~rdlarr~~~~~------~~~lt~--pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVEM--GGTDQRFNLLVGREVQRAYGQSP------QVCFLM--PLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEEE--EEGGGHHHHHHHHHHHHHTTCCC------CEEEEE--CCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEEE--echHHHHHHHHHHHHHHHhCCCC------ceEeec--ccccCCCCccccCcCCCCeeCCCC
Confidence 4677665 99999999998888899998742 233344 457778896 99999999999877
No 50
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.88 E-value=0.077 Score=55.65 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCC-cccHHHHHHH
Q 010043 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (519)
Q Consensus 337 ~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~e 408 (519)
+++.+ .+|.||..|+.--..+++.+|+. .+...|. -+|.+-+| +|||||.|| .|.|.|==++
T Consensus 249 ~~~lv--p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~ 313 (432)
T 2ip1_A 249 TPCLI--PCAIDQDPYFRVCRDVADKLKYS------KPALLHS--RFFPALQGSTTKMSASDDTTAIFMTDTPKQ 313 (432)
T ss_dssp CCEEE--EEEGGGHHHHHHHHHHHHHHTSC------CCEEEEE--CCCCCTTC--------CGGGCCBTTCCHHH
T ss_pred CceEE--EeccCcHHHHHHHHHHHHHhCCC------Cceeecc--ccccCCCCCccccCCCCCCCeEeccCCHHH
Confidence 44444 49999999999888889999973 2334554 35777788 899999999 8988764333
No 51
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=93.86 E-value=0.024 Score=59.21 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=44.7
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~l-g~~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
++++.+ ++|.||..|+..-..+++.+ +.. .+...+. -++.+.+|+|||||.||.|.|+|
T Consensus 184 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~~~~lt~--pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 184 EGCRLQ--IGGSDQWGNITAGLELIRKTKGEA------RAFGLTI--PLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHC--------CCEEEEE--CCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------Ceeeccc--ccccCCCcccccCCCCCeEecCC
Confidence 366644 49999999999988889888 763 1233444 45778899999999999999887
No 52
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=93.55 E-value=0.016 Score=58.89 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=45.3
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCc--EEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPK--ASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~-~~~~~~~~~--~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
.+++|.++ +|.||..|+..-..+++.++.. .+..+ .+. +.|. -+|.+-+|+|||||.||.|.|.|
T Consensus 151 ~~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~f~-~P~~~~~~~--~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 151 IYKAEGVP--VGEDQVYHIELTREIARRFNYLYDEVFP-EPEAILSRV--PKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTTCSEEE--ECGGGHHHHHHHHHHHHHHHHHSCCCCC-CCEEEECCS--CCCCCTTSSCCCGGGTCCCBTTC
T ss_pred HhCCCEEE--cccchHHHHHHHHHHHHHhhhhcccccC-Cchhhhccc--cccCCCCccccCCCCCCeEeeeC
Confidence 46888776 9999999999888888776421 00000 122 2233 35777789999999999999987
No 53
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.18 E-value=0.027 Score=57.23 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=45.5
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHc----C--CCCCCCCCCCcEEEEEe-EEEEcCCC-cceeeecCCcccHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRA----G--WLSADDSTYPKASHVGF-GLVLGEDG-KRLRTRFSEVVRLVDL 405 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~l----g--~~~~~~~~~~~~~Hv~~-g~V~~~~g-~kmSkR~G~~v~l~dl 405 (519)
.++++.++ +|.||..|+..-..+++.+ | +. .+...|... -+|.+-+| +|||||.||.|.|.|=
T Consensus 139 ~~~~~lvp--~G~DQ~~~i~l~rdla~r~n~~~g~~f~------~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~ 209 (337)
T 2el7_A 139 IYKADTVP--VGEDQVQHIELTREIARRFNHLFGETFP------EPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP 209 (337)
T ss_dssp HTTCCEEE--CCGGGCHHHHHHHHHHHHHHHHHSSCCC------CCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC
T ss_pred hhCCcEEE--cccchHHHHHHHHHHHHHHHhhcCcccC------CCeeecccccccccCCCCccccCCCCCCeeeCcCC
Confidence 36788775 9999999999877777655 4 21 233444311 25777789 8999999999988764
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=92.59 E-value=0.025 Score=57.13 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=45.3
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-EeEEEEcCCCcceeeecCCcccHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~-~~~~~~~~~~~Hv-~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
.+++|.+. +|.||..|+.--..+++.+|.. .+..+ .|...|. ..-+|.+-+|+|||||.||.|.|.|
T Consensus 137 ~~~~~~vp--vG~DQ~~hi~l~Rdia~r~n~~~g~~f~-~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 137 LFDTRIVP--VGKDQIQHVEIARDIALKVNNEWGEIFT-LPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp HTTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCSC-CCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred HhCCcEEE--eccchHHHHHHHHHHHHHhcccccCCCC-CchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 36788776 9999999999877888776530 00001 1233331 1235777789999999999999876
No 55
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=92.15 E-value=0.043 Score=56.87 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=42.9
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCC-----------CCCCCCCCCcEEEEEeEEEEcCCCcceeeecCCcccHHH
Q 010043 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW-----------LSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (519)
Q Consensus 336 ~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~-----------~~~~~~~~~~~~Hv~~g~V~~~~g~kmSkR~G~~v~l~d 404 (519)
++++.+ ++|.||..|...-..+++.++. .|...-..+...+. -+|.+.+|+|||||.||.|.|+|
T Consensus 231 ~~~~i~--~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQ--IGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTV--PLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEE--EECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEEC--CCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEE--ecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCcccccc--ccCcCCchhhccCCCCCeeeccC
Confidence 466655 4999999999987777765421 11000011233333 45778899999999999999886
No 56
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=92.10 E-value=0.12 Score=55.00 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=44.0
Q ss_pred ecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCC-cccHHHHHHHH
Q 010043 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEA 409 (519)
Q Consensus 345 ~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~e~ 409 (519)
+|.||..|+..-..+++.+|+. .+...|.+ +|.+-+| +|||||.|| .|.|.|==+++
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~p--ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i 368 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIGYP------KPALLHST--FFPALQGAQTKMSASDPNSSIFLTDTAKQI 368 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCEETTEEEEECCTTSTTCCCBTTCCHHHH
T ss_pred ccccHHHHHHHHHHHHHHhCCC------Cceeeecc--cccCCCCCccccCCCCCCCceeecCCHHHH
Confidence 7999999999888888999973 23445554 4777888 799999999 89887654443
No 57
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=92.09 E-value=0.042 Score=56.13 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=44.6
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEEeEEEEcCCCc-ceeeecCCcccHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLD 407 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~-~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR~G~~v~l~dll~ 407 (519)
.++++.++ +|.||..|+..-..+++.++.. ++..+ .+...+...-+|.+-+|. |||||.||.|.|.|=-+
T Consensus 160 ~~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~f~-~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~p~ 231 (351)
T 1yi8_B 160 AFGATLVP--VGDDQLPMLEQTREIVRRFNALYAPVLA-EPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDSAD 231 (351)
T ss_dssp HHTCSEEE--ECGGGHHHHHHHHHHHHHHHHHTCSCSC-CCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCCHH
T ss_pred hcCCCEEE--ecCCcHHHHHHHHHHHHHHHhhcccccC-CCeeeeecCccccCCCCccccCCCCCCeecCCCCHH
Confidence 36788776 9999999999877777765310 00001 122222111356667886 99999999998876433
No 58
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=91.44 E-value=0.097 Score=53.83 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=47.0
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc-CCC-cceeeec-CCcccHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG-EDG-KRLRTRF-SEVVRLVDLLDE 408 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~-~~g-~kmSkR~-G~~v~l~dll~e 408 (519)
.+++|.++ +|.||..|+..-..++..+|... .+.+.|.+ +|.+ .+| +|||||. |+.|.|.|=-++
T Consensus 198 ~l~ad~vp--gG~DQ~~~l~l~Rdla~r~~~~~-----~~~~l~~p--~l~gL~dG~~KMSKS~~~~~I~L~D~p~~ 265 (373)
T 3vgj_A 198 FLNVDICQ--LGIDQRKVNMLAREYCDIKKIKK-----KPVILSHG--MLPGLLEGQEKMSKSDENSAIFMDDSESD 265 (373)
T ss_dssp HTTCSEEC--CBGGGHHHHHHHHHHHHHHTCSC-----CCEEEEBC--CCCCSSTTCCSCCSSSTTCCCBTTCCHHH
T ss_pred ccCCcEEE--cchhhHHHHHHHHHHHHHhCCCC-----CceEEeCC--eeecCCCCCCCCcCCCCCCeeecCCCHHH
Confidence 45788664 99999999998888999998742 23445554 4766 378 4999999 578888654343
No 59
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=90.77 E-value=0.074 Score=55.12 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=34.8
Q ss_pred EEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCCcccHHHHHHHH
Q 010043 343 YVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSEVVRLVDLLDEA 409 (519)
Q Consensus 343 ~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~~v~l~dll~e~ 409 (519)
-.+|.||..|+..-..+++.+|+. .+...|.+ +|.+-+| +|||||.|+.|.|.|=-++.
T Consensus 228 vp~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~~~I~L~D~p~~i 288 (395)
T 3i05_A 228 IPQAIDQDPYFRLTRDIAPRLGYL------KPAVIHSK--FFPGLSGPKGKMSSSSGTAVLLTDTEKMV 288 (395)
T ss_dssp EEEEGGGHHHHHHHHHTHHHHTCC------CCEEEEEC--CCCCC-------------CCBTTCCHHHH
T ss_pred EEeccchHHHHHHHHHHHHHcCCC------Cceeeccc--cccCCCCCcccCCCCCCCcccCCCCHHHH
Confidence 359999999999888889999984 23445554 4766778 69999999999987643443
No 60
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=90.64 E-value=0.06 Score=56.50 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=43.6
Q ss_pred ecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCC-cccHHHHHHHH
Q 010043 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEA 409 (519)
Q Consensus 345 ~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~e~ 409 (519)
+|.||..|+..-..+++.+|+. .+...|.+ +|.+-+| +|||||.|| .|.|.|==+++
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~~~------~P~~l~~p--ll~gLdG~~~KMSKS~~nsaI~L~D~p~~I 321 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIGYP------KPALLHST--FFPALQGAQTKMSASDPNSSIFLTDTAKQI 321 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCEETTEEEEECCTTSSSSCCBTTCCHHHH
T ss_pred eehhhHHHHHHHHHHHHHhCCC------CceEeecc--cccCCCCCccccCCCCCCCeeeccCCHHHH
Confidence 7999999999888888899973 23345554 4777888 799999999 89887644443
No 61
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.63 E-value=0.056 Score=55.09 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=45.8
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcC------CCCCCCCCCCcEEEEE-eEEEEcCCC--cceeeecCC---cccH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG------WLSADDSTYPKASHVG-FGLVLGEDG--KRLRTRFSE---VVRL 402 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg------~~~~~~~~~~~~~Hv~-~g~V~~~~g--~kmSkR~G~---~v~l 402 (519)
.+++|.++ +|.||..|+..-..+++.+| +. .+...|.. ..+|.+-+| +|||||.|| .|.|
T Consensus 145 ~~~a~~vp--vG~DQ~~~lel~Rdia~r~n~~yg~~f~------~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L 216 (348)
T 2yy5_A 145 LYQPDIVP--VGNDQKQHLELTRDLAQRIQKKFKLKLR------LPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYL 216 (348)
T ss_dssp TTCCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCCCCC------CCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBT
T ss_pred HhCccEEE--ecccHHHHHHHHHHHHHHhhhhcccccC------CCeeecccccccccCCCCcchhcCCCCCCCCceEee
Confidence 47888776 99999999998888887774 21 13333321 123555566 899999999 7988
Q ss_pred HHHHHHH
Q 010043 403 VDLLDEA 409 (519)
Q Consensus 403 ~dll~e~ 409 (519)
.|=-++.
T Consensus 217 ~D~~~~i 223 (348)
T 2yy5_A 217 DDPKEVV 223 (348)
T ss_dssp TCCHHHH
T ss_pred cCCHHHH
Confidence 7644443
No 62
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=90.51 E-value=0.066 Score=55.45 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=34.0
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCC-cccHHHHHHHH
Q 010043 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEA 409 (519)
Q Consensus 344 V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~e~ 409 (519)
.+|.||..|+..-..+++.+|+. .+...|.+ +|.+-+| +|||||.|| .|.|.|=-++.
T Consensus 225 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i 285 (393)
T 3hv0_A 225 PHAIDQDPYFRMVRDVAPRLGYL------KPSSIHSI--FLPSLQGSQTKMSASVQNSSIFVNDNEESI 285 (393)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTCC------CCEEEEEC--CCCC-------------CCCCBTTCCHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCC------CceeeccC--cccCCCCCCcCCCCCCCCCeEeccCCHHHH
Confidence 58999999999888888899984 23445554 4766778 799999987 88886544443
No 63
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=90.36 E-value=0.1 Score=53.25 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=46.1
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-cceeeec-CCcccHHHHHHHH
Q 010043 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDEA 409 (519)
Q Consensus 337 ~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~-G~~v~l~dll~e~ 409 (519)
++|.++ +|.||..|+..-..+++.+|.. .+...|. .+|.+- +| +|||||. |+.|.|.|=-++.
T Consensus 186 ~~~~~~--~G~DQ~~~i~l~Rdia~r~~~~------~p~~~~~--~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i 251 (348)
T 2j5b_A 186 GIDICQ--LGIDQRKVNMLAIEYANDRGLK------IPISLSH--HMLMSLSGPKKKMSKSDPQGAIFMDDTEQEV 251 (348)
T ss_dssp CCSEEC--CBGGGHHHHHHHHHHHHHTTCC------CCEEEEB--CCCCCTTCSSCCCSTTCGGGSCBTTCCHHHH
T ss_pred CCcEEE--eccChHHHHHHHHHHHHHhCCC------CceeecC--ccccCCCCcccccccCCCCCeEeecCCHHHH
Confidence 777665 8999999999888889999884 1334444 346555 56 6999998 5889887654443
No 64
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=90.20 E-value=0.079 Score=54.82 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=45.2
Q ss_pred CCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeecCC-cccHHHHHHHH
Q 010043 338 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEA 409 (519)
Q Consensus 338 ~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~G~-~v~l~dll~e~ 409 (519)
++.+ .+|.||..|+..-..+++.+|+. .+...|.+ +|.+-+| +|||||.+| .|.|.|=-++.
T Consensus 208 a~~v--pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~~--~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I 272 (392)
T 3jxe_A 208 RCLI--PAAIDQDPYWRLQRDFAESLGYY------KTAALHSK--FVPSLTSLSGKMSASKPETAIYLTDSPEDV 272 (392)
T ss_dssp CEEE--EEEGGGHHHHHHHHHHTGGGTSC------CCEEEEEC--CCCCSSCSSSCCCTTSGGGCCBTTCCHHHH
T ss_pred Ccee--ecccchHHHHHHHHHHHHHcCCC------CCeeeecc--cccCCCCCccccccCCCCCeeeCCCCHHHH
Confidence 4444 69999999999888888999973 23445554 4666677 599999998 88876544443
No 65
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=90.04 E-value=0.16 Score=52.72 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=43.9
Q ss_pred EEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--cceeeec-CCcccHHHHHHH
Q 010043 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRF-SEVVRLVDLLDE 408 (519)
Q Consensus 342 I~V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g--~kmSkR~-G~~v~l~dll~e 408 (519)
+-.+|.||..|+.--..++..+|+. .+...|.+ +|.+-+| +|||||. |+.|.|.|=-++
T Consensus 246 lvpvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~~~~I~L~D~p~~ 307 (406)
T 3tze_A 246 LVPAAVDQDPFFRLARDKAKALGEK------KPSSIYVS--LLPDLKGVNRKMSASDPNSSIYLDDAQDT 307 (406)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--CCCCTTSCCCCSSCSCGGGSCBTTCCHHH
T ss_pred EEeeccchHHHHHHHHHHHHHcCCC------CceeeccC--cccCCCCCCcCCCCCCCCCcccCCCCHHH
Confidence 3358999999999888889999984 23445554 4777788 6999998 688988653343
No 66
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=89.66 E-value=0.14 Score=52.75 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=42.3
Q ss_pred ecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-ceeee-cCCcccHHHHHHH
Q 010043 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTR-FSEVVRLVDLLDE 408 (519)
Q Consensus 345 ~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~-kmSkR-~G~~v~l~dll~e 408 (519)
+|.||..|+.--..+++.+|+. .+...|.+ +|.+-+|. ||||| .|+.|.|.|=-++
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~~--~l~gLdG~~KMSKSd~~~~I~L~D~p~~ 287 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFI------QPTVLFHK--MVPLLSGVTKFDIPSDHNSILLSDNAKQ 287 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--CCCCTTCTTCCCCCCTTTSCBTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHcCCC------CceEeecC--eeeCCCCCCccCcCCCCCeeecCCCHHH
Confidence 5999999999988999999984 13344554 47666784 99999 7999988763333
No 67
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=89.12 E-value=0.14 Score=51.65 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=45.6
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCC-CCCCCCCcEEEE-EeEEEEcCCC--cceeeecCC-c--ccHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS-ADDSTYPKASHV-GFGLVLGEDG--KRLRTRFSE-V--VRLVDLLD 407 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~-~~~~~~~~~~Hv-~~g~V~~~~g--~kmSkR~G~-~--v~l~dll~ 407 (519)
.+++|.++ +|.||..|+..-..+++.+|..- +... .+...+. ..-+|.+-+| +|||||.|| . |.|.|=-+
T Consensus 135 ~~~~~~vp--vG~DQ~~~iel~Rdia~r~n~~yg~~f~-~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~ 211 (328)
T 1i6k_A 135 LYNTDIVP--VGEDQKQHIELTRDLAERFNKRYGELFT-IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAK 211 (328)
T ss_dssp TTTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCCC-CCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHH
T ss_pred HhCCCEEe--cccchHHHHHHHHHHHHHhCcccccccC-CCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHH
Confidence 46888776 99999999998888887776200 0000 1222221 0124556677 899999999 6 88876544
Q ss_pred HH
Q 010043 408 EA 409 (519)
Q Consensus 408 e~ 409 (519)
+.
T Consensus 212 ~i 213 (328)
T 1i6k_A 212 TI 213 (328)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=85.65 E-value=0.19 Score=52.82 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=41.5
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc--ceeeecCC-cccHHHHHHH
Q 010043 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRFSE-VVRLVDLLDE 408 (519)
Q Consensus 344 V~g~~q~~hf~~~~~i~~~lg~~~~~~~~~~~~~Hv~~g~V~~~~g~--kmSkR~G~-~v~l~dll~e 408 (519)
.+|.||..|+..-..++..+|+. .+.+.|.+ ++.+-+|. |||||.+| .|.|.|=-++
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~------~p~~~~~~--~l~gLdG~~~KMSKS~~ns~I~l~D~p~~ 351 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHP------KNAYLLGK--FLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSC------CCEEEEEC--CCCBTTBTTCCCCTTCGGGSCBTTCCHHH
T ss_pred eeecchHHHHHHHHHHHHHhCCC------CCeeecCC--cccCCCCCCCccCCCCCCCeeeecCCHHH
Confidence 57999999999888888889984 23455654 36666664 99999987 6877543333
No 69
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=83.93 E-value=0.32 Score=49.94 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=45.4
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCC--CCC-CCcEEEEEeEEEEcCCC------------------ccee
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSAD--DST-YPKASHVGFGLVLGEDG------------------KRLR 393 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~~--~~~-~~~~~Hv~~g~V~~~~g------------------~kmS 393 (519)
.+++|.+. +|.||..|+.--..+++.+|..++. .+. .+...|. .+|.+-+| +|||
T Consensus 178 ~~~~~~vp--~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~--~~l~gL~g~~~~~~~~~~~~~~~~~~~KMS 253 (375)
T 2cyc_A 178 YQGVTIAH--AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHH--HLLLGLQEPPKWPIESEEEFKEIKAQMKMS 253 (375)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEE--CCCBCSSCCSSSSCCSHHHHHHHHHHHBGG
T ss_pred HhCCCeec--ccchHHHHHHHHHHHHHHhCCcccccccccCccEEecc--ccccCCCCcccccccchhhhhhhhhhhccc
Confidence 35788765 9999999999888888888761000 000 1233444 35666676 7999
Q ss_pred eec-CCcccHHHH
Q 010043 394 TRF-SEVVRLVDL 405 (519)
Q Consensus 394 kR~-G~~v~l~dl 405 (519)
||. ++.|.|.|=
T Consensus 254 KS~~~~~I~L~d~ 266 (375)
T 2cyc_A 254 KSKPYSAVFIHDS 266 (375)
T ss_dssp GSCGGGSCBTTCC
T ss_pred CCCCCCeeccCCC
Confidence 998 788888654
No 70
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=83.47 E-value=0.34 Score=49.01 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.9
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCC-CeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G-~~V~~~~yi~D~ 177 (519)
|++--|||+|||||+..++ --+.+ |...| |+| .+.|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~-lQ~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVA-IGEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHH-HHHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHhcCCCCE--EEEEeCc
Confidence 7888899999999998764 22223 35568 887 5666774
No 71
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=80.67 E-value=1.1 Score=46.21 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=31.6
Q ss_pred CceEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHH-CCCeEEEEeccCCcc
Q 010043 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 178 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~-~G~~V~~~~yi~D~G 178 (519)
++++.| |++--|||+||+||+-.+. +.|.|.. .|+.|... |+|+.
T Consensus 80 ~~~~~v-ysG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 80 KKPTFI-FIQKYPQKEVALEEYITLE----FARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp TCCEEE-EEEECCCSSCBGGGHHHHH----HHHHHHHHHCCEEEEE--ECHHH
T ss_pred CCCeEE-EeccCCCCCccHHHHHHHH----HHHHHHHhcCCeEEEE--eCchH
Confidence 334556 8999999999999975542 2333544 58887766 88865
No 72
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=80.53 E-value=0.81 Score=46.30 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=29.1
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++.-|||.|||||+..++. -.+-|...||+|.. .|+||
T Consensus 16 ~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~--~IaD~ 54 (340)
T 2g36_A 16 LSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFY--FVADW 54 (340)
T ss_dssp EEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEE--EECHH
T ss_pred EEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEE--EEecc
Confidence 88999999999999977642 23336678998764 46774
No 73
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=77.11 E-value=1.6 Score=45.44 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=27.7
Q ss_pred EEEEecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 130 V~VE~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
+.| |++--|||+ |||||+- .+ ...+-|...||++.. .|+||
T Consensus 31 ~~i-y~G~dPTg~sLHlGh~v-~l---~~l~~lQ~~G~~~i~--lIgd~ 72 (419)
T 2ts1_A 31 VTL-YCGFDPTADSLHIGHLA-TI---LTMRRFQQAGHRPIA--LVGGA 72 (419)
T ss_dssp CEE-EEEECCSSSSCBGGGHH-HH---HHHHHHHHTTCEEEE--EECTT
T ss_pred CEE-EEeeCCCCCCccHHHHH-HH---HHHHHHHHCCCcEEE--EEcCc
Confidence 344 899999999 9999975 22 223445567998754 44554
No 74
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=76.83 E-value=0.79 Score=46.17 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=27.6
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.||+||...++ --..+ |.. ||++ .+.|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~-lQ~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVE-LQH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHH-HTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHc-CCcE--EEEEeCc
Confidence 7888999999999998776 22223 333 9986 5667873
No 75
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=75.90 E-value=0.49 Score=48.80 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=42.0
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCC-CCCCCCcEEEEEeEEEEcC-CC-cceeeec---CCcccHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSA-DDSTYPKASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVDLLDE 408 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~~~-~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~---G~~v~l~dll~e 408 (519)
.+++|.+. +|.||..|+..-..++..+|...+ .......+.+-.-.+|.+- +| +|||||. |+.|.|.|=-++
T Consensus 169 ~~~ad~vP--vG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~ 246 (388)
T 3prh_A 169 LYGTDLVP--PGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQ 246 (388)
T ss_dssp TTTCCEEC--CCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHH
T ss_pred HhCCCEEE--echhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHH
Confidence 35788765 999999999988888887774210 0000000000000112222 44 6999999 899988654344
No 76
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=75.49 E-value=1.6 Score=45.09 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=26.0
Q ss_pred ecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
||+--|||+ |||||+- ++. .+.+ |...||++.. .|+||
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~-lQ~~G~~~~~--lIgD~ 106 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFW-MYLEGYKAFT--LIGGS 106 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHH-HHHHTCEEEE--EECTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHH-HHHcCCcEEE--EEcCc
Confidence 899999999 9999986 322 2334 4456998754 44553
No 77
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=75.06 E-value=1.7 Score=45.28 Aligned_cols=42 Identities=14% Similarity=0.371 Sum_probs=28.0
Q ss_pred eEEEEecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 129 KAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 129 kV~VE~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
++.| |++--|||+ |||||+- .+. . .+-|...||++.. .|+||
T Consensus 32 ~~~i-y~G~dPTg~sLHlGh~v-~l~--~-~~~lQ~~G~~~~~--lIgd~ 74 (420)
T 1jil_A 32 QVTL-YCGADPTADSLHIGHLL-PFL--T-LRRFQEHGHRPIV--LIGGG 74 (420)
T ss_dssp CCEE-EEEECCSSSSCBHHHHH-HHH--H-HHHHHHTTCEEEE--EECTT
T ss_pred CCEE-EEeeCCCCCCccHHHHH-HHH--H-HHHHHHCCCcEEE--EEcCc
Confidence 3445 999999999 9999975 222 2 3345567998754 34443
No 78
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=74.44 E-value=1.8 Score=43.32 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=26.6
Q ss_pred ecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||+ |||||+- ++. ..+-|...||++ .+.|+||
T Consensus 37 y~G~~PTg~slHlGh~l-~l~---~~~~lQ~~g~~~--~~~i~D~ 75 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL---CLKRFQQAGHKP--VALVGGA 75 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH---HHHHHHHTTCEE--EEEECTT
T ss_pred EEeecCCCCcccHHHHH-HHH---HHHHHHHcCCcE--EEEEccc
Confidence 999999999 9999975 222 233455669886 4456664
No 79
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=72.03 E-value=0.68 Score=46.99 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=41.3
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEEeEEEEcC-CC-cceeeecC---CcccHHHHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGE-DG-KRLRTRFS---EVVRLVDLLDE 408 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg~~-~~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~G---~~v~l~dll~e 408 (519)
.+++|.+. +|.||..|+.--..++..+|.. .+.......+.+-...+|-+- +| +|||||.+ +.|.|.|=-++
T Consensus 150 ~~~ad~vp--vG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~ 227 (346)
T 3n9i_A 150 LYQTNQVP--VGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227 (346)
T ss_dssp TTTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHH
T ss_pred HhCceEEE--eccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHH
Confidence 35778765 9999999999888888877620 000000000111000123233 66 59999987 68887654344
No 80
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=70.33 E-value=3.1 Score=43.45 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=28.4
Q ss_pred EEEEecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCcchHH
Q 010043 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (519)
Q Consensus 130 V~VE~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~G~Q~ 181 (519)
+.| |++--|||+ ||+||+- ++ -.+ +-|...||+| .+.|+||=..+
T Consensus 38 ~~v-y~G~dPTg~sLHlGh~v-~l--~~l-~~lQ~~G~~~--i~lIgD~ta~i 83 (432)
T 1h3f_A 38 LTV-KLGADPTRPDLHLGHAV-VL--RKM-RQFQELGHKV--VLIIGDFTGMI 83 (432)
T ss_dssp CEE-EEEECTTCCSCBHHHHH-HH--HHH-HHHHHTTCEE--EEEECCCC---
T ss_pred cEE-EEcccCCCCCCchhhHH-HH--HHH-HHHHHCCCCE--EEEEccceEEe
Confidence 344 899999997 9999975 21 223 3344569885 55677764433
No 81
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=69.93 E-value=1.2 Score=45.16 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.7
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHH--HHHCCCeEEEEeccCCcc
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDWG 178 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lari--L~~~G~~V~~~~yi~D~G 178 (519)
+..| |++--|||+|||||+..++ .++ |... |+| .+.|+||=
T Consensus 22 ~~~v-ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~h 64 (351)
T 1yi8_B 22 RPRV-LTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADVQ 64 (351)
T ss_dssp CSEE-EEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHHH
T ss_pred CcEE-EEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecch
Confidence 3344 8899999999999997764 233 3333 665 66788863
No 82
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=69.86 E-value=2.9 Score=42.72 Aligned_cols=39 Identities=13% Similarity=0.375 Sum_probs=26.1
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.||+|| .++-....+-|..+||+|. +.|+||
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~--~lIaD~ 98 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFI--FWIADW 98 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEE--EEECHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEE--EEEecc
Confidence 89999999999999 2333322344566798765 455664
No 83
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=68.78 E-value=0.7 Score=46.81 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=42.2
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcC--CCC--CCCCCCCcEEEEEeEEEEcC-CC-cceeeec---CCcccHHHH
Q 010043 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLS--ADDSTYPKASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVDL 405 (519)
Q Consensus 335 ~~~~d~~I~V~g~~q~~hf~~~~~i~~~lg--~~~--~~~~~~~~~~Hv~~g~V~~~-~g-~kmSkR~---G~~v~l~dl 405 (519)
.+++|.+. +|.||..|+.--..++..+| |.. +.......+.+-...+|-+- +| +|||||. |+.|.|.|=
T Consensus 141 ~~~ad~vp--vG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~ 218 (341)
T 3sz3_A 141 LYGAHQVP--VGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLED 218 (341)
T ss_dssp TTTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCC
T ss_pred HcCCCEEE--eccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCC
Confidence 35778665 99999999998888887775 210 00000001111001123333 56 6999999 789988654
Q ss_pred HHHH
Q 010043 406 LDEA 409 (519)
Q Consensus 406 l~e~ 409 (519)
-++.
T Consensus 219 p~~i 222 (341)
T 3sz3_A 219 PKSI 222 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 84
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=68.55 E-value=3.3 Score=42.03 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred eEEEEecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 129 KAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 129 kV~VE~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
+..| |++--|||+ |||||+- ++. .+. -|...||+|.. .|+||
T Consensus 46 ~~~v-y~G~~PTg~sLHLGhl~-~l~--~~~-~lQ~~G~~~~~--lIaD~ 88 (356)
T 2pid_A 46 PQTI-YCGFDPTADSLHVGHLL-ALL--GLF-HLQRAGHNVIA--LVGGA 88 (356)
T ss_dssp CCEE-EEEECCSSSSCBHHHHH-HHH--HHH-HHHHTTCEEEE--EECTT
T ss_pred CCEE-EEeecCCCCcccHHHHH-HHH--HHH-HHHHCCCcEEE--EEccc
Confidence 3555 999999998 9999954 333 233 34456988644 45554
No 85
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=67.06 E-value=1.3 Score=44.44 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=26.9
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.||+||.-+++.- +.++-+ ||++ .+.|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHHhc--CCCE--EEEEecC
Confidence 788899999999998765532 444433 8887 4456665
No 86
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=63.96 E-value=4.1 Score=41.94 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.0
Q ss_pred eEEEEecCCCcCCCCccchhHHHHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010043 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (519)
Q Consensus 129 kV~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~-~G~~V~~~~yi~D~ 177 (519)
++.| |++--|||.||+||.-.++ +.|.|.. .|++|.. .|.||
T Consensus 73 p~~i-~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 115 (392)
T 3jxe_A 73 GFFL-YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYI--QITDD 115 (392)
T ss_dssp CCEE-EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEE--EECHH
T ss_pred CeEE-EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEE--Eecch
Confidence 3445 8888999999999986553 2343544 7887664 46675
No 87
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=62.80 E-value=5.9 Score=41.83 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.1
Q ss_pred CceEEEEecCCCcC-CCCccchhHHHHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010043 127 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (519)
Q Consensus 127 ~~kV~VE~~SpNp~-~plHIGHlR~~iiGD~lariL~~-~G~~V~~~~yi~D~ 177 (519)
++++.| |++--|| |.|||||+-.++ +.|.|.. .|+.|.. .|+|+
T Consensus 153 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~ii--lI~D~ 198 (477)
T 1r6t_A 153 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 198 (477)
T ss_dssp TCCEEE-EEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 345566 9999999 899999986544 2344554 8988654 34553
No 88
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=61.63 E-value=6 Score=40.00 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=27.1
Q ss_pred EEEEecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 130 V~VE~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
..| |++--|||.||+||.-.++ -.+.+ |...||+| ...|+||
T Consensus 41 ~~v-y~G~~PTg~lHlGhyl~~l--~~~~~-lQ~~G~~~--~~~i~D~ 82 (348)
T 2j5b_A 41 FTA-YNGFEPSGRIHIAQALITV--MNTNN-MIECGGQM--IIYIADW 82 (348)
T ss_dssp EEE-EEEECCCSSCBHHHHHHHH--HHHHH-HHHTTEEE--EEEECHH
T ss_pred CEE-EeccCCCCCCchhHHHHHH--HHHHH-HHHcCCcE--EEEeccc
Confidence 344 9999999999999932221 23333 44568775 4567775
No 89
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=60.47 E-value=2.1 Score=43.38 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=26.9
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.||+||...++. -..+ |.. ||++ .+.|.||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l~--~~~~-lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVMQ--SLIE-LQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTGG--GHHH-HHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHHH--HHHH-HHh-CCcE--EEEEcCh
Confidence 88899999999999987652 1122 444 7875 5667774
No 90
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=59.90 E-value=6.4 Score=41.03 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=27.4
Q ss_pred EEEEecCCCcCCC-CccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 130 V~VE~~SpNp~~p-lHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
+.| |++--|||+ |||||+- ++. .+ +-|...||++. +.|+||
T Consensus 33 ~~i-y~G~dPTg~sLHLGhlv-~l~--~l-~~lQ~~G~~~i--~lIgD~ 74 (432)
T 2jan_A 33 MTV-YAGFDPTAPSLHAGHLV-PLL--TL-RRFQRAGHRPI--VLAGGA 74 (432)
T ss_dssp CEE-EEEECCSSSSCBGGGHH-HHH--HH-HHHHHTTCEEE--EEECHH
T ss_pred CEE-EEeeCCCCCCcCHHHHH-HHH--HH-HHHHHCCCcEE--EEEcCc
Confidence 344 899999997 9999954 222 23 34455799864 445664
No 91
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=59.77 E-value=5.5 Score=40.99 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=29.6
Q ss_pred CceEEEEecCCCcCC-CCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 127 VKKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~-plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
++++.| |++--||| .||+||+=.+ ..+.++-+..|..|... |+|+
T Consensus 76 ~~~~~v-y~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 76 GQPFYL-YTGRGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp TCCEEE-EEEECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEE--ECHH
T ss_pred CCCeEE-EEeecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEE--Ecch
Confidence 344566 89999999 6999998433 23344333347777665 7775
No 92
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=59.31 E-value=6.6 Score=40.97 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.0
Q ss_pred CceEEEEecCCCcC-CCCccchhHHHHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010043 127 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (519)
Q Consensus 127 ~~kV~VE~~SpNp~-~plHIGHlR~~iiGD~lariL~~-~G~~V~~~~yi~D~ 177 (519)
++++.| |++--|| |.|||||+-..+ ..|.|.. .|+.|.. .|+|+
T Consensus 106 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~G~~~ii--lIgD~ 151 (437)
T 1r6u_A 106 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 151 (437)
T ss_dssp TCCEEE-EEEECCCSSCCBHHHHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 344566 9999999 899999986443 2344554 8988654 45554
No 93
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=56.74 E-value=7.2 Score=40.63 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=27.9
Q ss_pred EEEEecCCCcC-CCCccchhHHHHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010043 130 AVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (519)
Q Consensus 130 V~VE~~SpNp~-~plHIGHlR~~iiGD~lariL~~-~G~~V~~~~yi~D~ 177 (519)
+.| |++--|| |.|||||+-..+. +.+ |.. .|+.|. ..|+||
T Consensus 103 ~~v-y~G~dPTag~LHLGh~v~~~~---l~~-lQ~~~g~~~i--~lI~D~ 145 (432)
T 2ip1_A 103 FFL-YTGRGPSSDSMHLGHMIPFVF---TKW-LQEVFDVPLV--IELTDD 145 (432)
T ss_dssp CEE-EEEECCCSSCCBGGGHHHHHH---HHH-HHHHHTCCEE--EEECHH
T ss_pred eEE-EEeecCCCCCccHHHHHHHHH---HHH-HHHHcCCeEE--EEEecc
Confidence 445 8999999 8999999864432 333 554 788754 445674
No 94
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=55.99 E-value=6.9 Score=40.96 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred ceEEEEecCCCcC-CCCccchhHHHHHHHHHHHHHHHC-CCeEEEEeccCCcc
Q 010043 128 KKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWG 178 (519)
Q Consensus 128 ~kV~VE~~SpNp~-~plHIGHlR~~iiGD~lariL~~~-G~~V~~~~yi~D~G 178 (519)
+++.| |++--|| |.|||||+-.+ ...|.|... |..|.. -|+|+.
T Consensus 90 ~p~~v-ytG~dPTagsLHLGH~v~~----~~l~~lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 90 HPIYI-YTGRGPSSGALHLGHLLPF----IFTKYLQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp CCEEE-EEEECCCSSCCBHHHHHHH----HHHHHHHHHHTCEEEE--EECHHH
T ss_pred CCeEE-EecCCCCCCCccHHHHHHH----HHHHHHHHccCceEEE--EeeCcH
Confidence 34566 9999999 88999997443 323335545 666665 488874
No 95
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=53.87 E-value=8.2 Score=39.87 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=29.7
Q ss_pred CceEEEEecCCCcCC-CCccchhHHHHHHHHHHHHHHHC-CCeEEEEeccCCc
Q 010043 127 VKKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (519)
Q Consensus 127 ~~kV~VE~~SpNp~~-plHIGHlR~~iiGD~lariL~~~-G~~V~~~~yi~D~ 177 (519)
++++.| |++--||| .||+||+- |=.+.|.|... |+.|.. -|+|+
T Consensus 99 ~~p~~v-y~G~~PTg~~lHLGh~v----~~~~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 99 NRPFYL-YTGRGPSSKTMHIGHTI----PFLLCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp TCCEEE-EEEECCCSSCCBGGGHH----HHHHHHHHHHHHTCCEEE--EECHH
T ss_pred CCCeEE-EEeeCCCCCcccHHHHH----HHHHHHHHHHhcCCcEEE--EeeCh
Confidence 344566 89999998 79999974 43233445555 877765 46775
No 96
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=53.26 E-value=6.9 Score=40.25 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred eEEEEecCCCcC-CCCccchhHHHHHHHHHHHHHHHC-CCeEEEEeccCCcch
Q 010043 129 KAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWGT 179 (519)
Q Consensus 129 kV~VE~~SpNp~-~plHIGHlR~~iiGD~lariL~~~-G~~V~~~~yi~D~G~ 179 (519)
++.| |++--|| +.||+||+-.++ .+.+ |..+ |+.|.. -|+|++.
T Consensus 74 ~~~v-y~G~~PTa~~lHlGh~v~~~---~~~~-lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 74 LFYL-YTGRGPSSESLHVGHLVPFL---FTKY-LQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp CCEE-EEEECCSSSSCBSTTHHHHH---HHHH-HHHHHCCCEEE--EECHHHH
T ss_pred CeEE-EeCCCCCCCCccHHHHHHHH---HHHH-HHHhcCCCeEe--eccChHH
Confidence 3455 8999999 689999974443 2444 4454 666554 6899754
No 97
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=50.11 E-value=4 Score=41.16 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=26.2
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||+||+||.-+++ .-+.++-+ ||+| .+.|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 7888999999999986654 22333433 5765 4667775
No 98
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=46.90 E-value=3.8 Score=41.94 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=25.1
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||.||+||.-.++. .+.+ |...||+|. ..|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~l~--~~~~-lQ~~G~~~~--~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAGA--KIAD-FQKAGIKTR--VFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHHH--HHHH-HHHTTCBCE--EEECHH
T ss_pred EeCCCCCCCcCchHHHHHHH--HHHH-HHHCCCcEE--EEecCc
Confidence 88899999999999322221 2223 445698764 456664
No 99
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=46.41 E-value=5.6 Score=40.85 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=25.9
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||+||+||.-+++- -.. -|.. ||+| .+.|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~--~~~-~LQ~-~~~~--~~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK--QFV-ELQH-DYNS--YFCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH--HHH-HTTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH--HHH-HHHc-cCcE--EEEEecc
Confidence 88999999999999855542 111 2232 8886 4567775
No 100
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=36.19 E-value=14 Score=29.33 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=45.9
Q ss_pred cchHhHHHHHHHHHHHHHHhc-CCCCCCCccccc-cc---CC--CCcccchhhHHHHHHhhcCCCCCCCChHHHHHHHHH
Q 010043 6 ENTGNVKRELEKVFDLALKAT-VPNETDVRPLIA-AC---TA--KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMK 78 (519)
Q Consensus 6 ~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~i~-~~---~~--~~GD~~~~~a~~lak~~~~~~~~~~~P~~iA~~i~~ 78 (519)
.+| .++++|.+.|..|++.. +|- .....++. .| .- +.||.+.. |+.+.|.++...--.+++.++|..|++
T Consensus 4 ~~m-~~~~ei~~qi~~a~~~a~FPI-~s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 4 MKM-GVKEDIRGQIIGALAGADFPI-NSPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp CCC-SHHHHHHHHHHHHHTTSSSTT-BHHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHH
T ss_pred cch-hhHHHHHHHHHHHHcCCCCCC-CCHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHH
Confidence 356 68889999999988754 331 11111221 12 22 45999877 899998886443335789999998886
Q ss_pred h
Q 010043 79 N 79 (519)
Q Consensus 79 ~ 79 (519)
+
T Consensus 81 r 81 (84)
T 1iio_A 81 K 81 (84)
T ss_dssp H
T ss_pred H
Confidence 5
No 101
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=27.84 E-value=16 Score=36.74 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=24.9
Q ss_pred ecCCCcCCCCccchhHHHHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010043 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (519)
Q Consensus 134 ~~SpNp~~plHIGHlR~~iiGD~lariL~~~G~~V~~~~yi~D~ 177 (519)
|++--|||+||+||.-+++ .-+.+ |.. +|+| .+.|.||
T Consensus 19 ~sG~~PTG~lHLGh~vg~l--~~~~~-lQ~-~~~~--~~~iaD~ 56 (346)
T 3n9i_A 19 FSGAQPSGELTIGNYMGAL--RQWVQ-MQD-DYDC--IYCIVDL 56 (346)
T ss_dssp EEEECSCSCCBHHHHHHTH--HHHHT-TTT-TSEE--EEEECHH
T ss_pred EECcCCCCcccHHHHHHHH--HHHHH-HHh-hCcE--EEEEecc
Confidence 7899999999999985553 11112 332 5664 4567775
No 102
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=23.09 E-value=50 Score=32.03 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCCccchh---HHHHHHHHHHHHHHHC-CCeEEEEeccCCcchHH
Q 010043 141 KEMHVGHL---RSTIIGDSLARMLEFS-NVEVLRRNHVGDWGTQF 181 (519)
Q Consensus 141 ~plHIGHl---R~~iiGD~lariL~~~-G~~V~~~~yi~D~G~Q~ 181 (519)
++..||.. =+.+++..++.+|+.. ||+|.+...+++....+
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~~~ 56 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQ 56 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHHHH
Confidence 55666655 4779999999999998 99999999887744433
Done!