Query 010044
Match_columns 519
No_of_seqs 223 out of 1302
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 20:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-200 5E-205 1562.2 42.2 477 42-519 20-497 (582)
2 PLN03129 NADP-dependent malic 100.0 6E-193 1E-197 1538.4 44.8 471 49-519 39-509 (581)
3 PRK13529 malate dehydrogenase; 100.0 8E-193 2E-197 1533.4 43.3 470 47-519 12-490 (563)
4 PTZ00317 NADP-dependent malic 100.0 1E-192 3E-197 1530.2 43.6 472 46-519 13-489 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 2E-110 4E-115 869.0 26.4 355 85-519 1-361 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 9E-104 2E-108 873.4 27.2 312 132-519 34-348 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 7E-103 2E-107 869.7 26.9 311 132-519 38-352 (763)
8 PRK07232 bifunctional malic en 100.0 8E-102 2E-106 858.2 28.0 311 132-519 30-344 (752)
9 PF03949 Malic_M: Malic enzyme 100.0 7.3E-85 1.6E-89 646.6 16.7 211 307-519 1-214 (255)
10 cd05312 NAD_bind_1_malic_enz N 100.0 1.3E-82 2.7E-87 637.5 21.3 211 307-519 1-213 (279)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.5E-82 3.2E-87 629.6 21.3 211 307-519 1-214 (254)
12 PF00390 malic: Malic enzyme, 100.0 2E-83 4.4E-88 608.1 9.1 182 116-297 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 8E-49 1.7E-53 382.2 17.3 184 307-519 1-187 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 1.8E-08 4E-13 84.4 11.4 86 309-446 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.9 0.00036 7.9E-09 75.3 16.3 160 252-449 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.5 0.00052 1.1E-08 73.4 9.6 121 308-449 158-280 (417)
17 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0018 3.8E-08 63.9 12.2 133 310-465 2-143 (217)
18 PLN02477 glutamate dehydrogena 97.4 0.0073 1.6E-07 65.1 17.8 186 253-461 112-324 (410)
19 PRK09414 glutamate dehydrogena 97.4 0.008 1.7E-07 65.5 17.6 189 253-461 138-357 (445)
20 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0015 3.2E-08 67.2 10.2 136 287-449 139-276 (311)
21 TIGR00936 ahcY adenosylhomocys 97.3 0.0044 9.6E-08 66.7 13.9 128 299-459 156-293 (406)
22 PRK14030 glutamate dehydrogena 97.2 0.02 4.4E-07 62.4 18.5 189 253-461 134-357 (445)
23 PRK14031 glutamate dehydrogena 97.2 0.0099 2.1E-07 64.8 15.9 181 253-449 134-347 (444)
24 PRK00045 hemA glutamyl-tRNA re 97.2 0.0014 3E-08 70.1 9.3 120 309-449 161-283 (423)
25 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0063 1.4E-07 65.7 14.0 129 299-461 163-302 (413)
26 PLN02494 adenosylhomocysteinas 97.1 0.0065 1.4E-07 66.6 13.1 131 299-462 215-355 (477)
27 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0043 9.2E-08 59.1 10.3 89 317-449 30-119 (168)
28 TIGR02853 spore_dpaA dipicolin 97.1 0.0052 1.1E-07 62.9 11.6 139 307-474 127-265 (287)
29 PRK14982 acyl-ACP reductase; P 97.1 0.0047 1E-07 65.1 11.2 114 310-450 134-250 (340)
30 PF01488 Shikimate_DH: Shikima 97.1 0.00051 1.1E-08 62.3 3.6 102 327-450 8-113 (135)
31 PRK08306 dipicolinate synthase 96.9 0.0084 1.8E-07 61.5 11.2 129 312-474 133-266 (296)
32 COG0373 HemA Glutamyl-tRNA red 96.9 0.0036 7.8E-08 67.5 8.8 135 287-450 139-278 (414)
33 PTZ00079 NADP-specific glutama 96.9 0.085 1.8E-06 57.8 19.2 188 253-461 143-366 (454)
34 PLN00203 glutamyl-tRNA reducta 96.8 0.005 1.1E-07 68.1 8.9 121 309-449 243-372 (519)
35 cd01076 NAD_bind_1_Glu_DH NAD( 96.7 0.017 3.7E-07 57.4 11.1 132 308-461 8-149 (227)
36 cd05313 NAD_bind_2_Glu_DH NAD( 96.6 0.039 8.5E-07 56.1 13.4 133 309-461 16-167 (254)
37 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.032 6.8E-07 54.2 11.4 128 309-467 4-134 (200)
38 PTZ00075 Adenosylhomocysteinas 96.5 0.059 1.3E-06 59.3 14.7 123 299-449 215-344 (476)
39 PLN00106 malate dehydrogenase 96.4 0.019 4.2E-07 60.0 10.2 142 316-473 4-165 (323)
40 PRK13940 glutamyl-tRNA reducta 96.4 0.011 2.5E-07 63.6 8.3 111 312-449 163-276 (414)
41 PRK14175 bifunctional 5,10-met 96.3 0.024 5.1E-07 58.6 9.8 96 309-448 136-232 (286)
42 PF00670 AdoHcyase_NAD: S-aden 96.2 0.071 1.5E-06 51.1 12.0 121 308-461 3-123 (162)
43 PRK14192 bifunctional 5,10-met 96.2 0.029 6.4E-07 57.6 10.0 109 309-461 137-250 (283)
44 cd01065 NAD_bind_Shikimate_DH 96.0 0.023 5E-07 51.1 7.2 108 316-449 4-120 (155)
45 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.038 8.3E-07 52.4 8.9 114 310-449 7-132 (194)
46 PRK12549 shikimate 5-dehydroge 95.9 0.027 5.8E-07 57.5 7.8 90 316-422 112-203 (284)
47 TIGR00518 alaDH alanine dehydr 95.8 0.031 6.8E-07 59.1 8.3 95 329-447 165-268 (370)
48 cd00650 LDH_MDH_like NAD-depen 95.7 0.019 4.2E-07 57.3 6.0 130 334-478 1-149 (263)
49 PRK00676 hemA glutamyl-tRNA re 95.6 0.055 1.2E-06 57.2 8.9 91 327-451 170-266 (338)
50 TIGR01809 Shik-DH-AROM shikima 95.5 0.035 7.5E-07 56.6 6.8 96 316-431 108-210 (282)
51 cd05291 HicDH_like L-2-hydroxy 95.4 0.044 9.5E-07 56.2 7.5 125 333-474 2-144 (306)
52 PF00056 Ldh_1_N: lactate/mala 95.2 0.018 3.8E-07 53.0 3.4 105 332-449 1-121 (141)
53 PF03807 F420_oxidored: NADP o 95.2 0.034 7.4E-07 46.5 4.9 94 333-448 1-96 (96)
54 PRK08293 3-hydroxybutyryl-CoA 95.1 0.046 1E-06 55.2 6.5 123 332-480 4-149 (287)
55 PF00208 ELFV_dehydrog: Glutam 95.1 0.062 1.3E-06 54.1 7.2 131 305-449 5-151 (244)
56 PRK10792 bifunctional 5,10-met 95.1 0.2 4.3E-06 51.9 11.0 107 311-461 139-251 (285)
57 PRK05086 malate dehydrogenase; 95.0 0.13 2.8E-06 53.3 9.6 105 332-449 1-121 (312)
58 cd05296 GH4_P_beta_glucosidase 95.0 0.047 1E-06 59.0 6.5 126 332-472 1-166 (419)
59 cd05212 NAD_bind_m-THF_DH_Cycl 95.0 0.18 3.9E-06 46.9 9.4 91 312-445 9-99 (140)
60 PTZ00082 L-lactate dehydrogena 94.8 0.1 2.2E-06 54.4 8.2 127 330-474 5-155 (321)
61 PRK00066 ldh L-lactate dehydro 94.8 0.06 1.3E-06 55.8 6.4 128 331-475 6-150 (315)
62 PRK09424 pntA NAD(P) transhydr 94.7 0.18 3.9E-06 56.0 10.1 180 238-456 82-296 (509)
63 PRK14191 bifunctional 5,10-met 94.6 0.12 2.6E-06 53.5 8.0 92 311-446 137-229 (285)
64 PTZ00117 malate dehydrogenase; 94.6 0.16 3.5E-06 52.7 8.9 128 330-475 4-150 (319)
65 cd05197 GH4_glycoside_hydrolas 94.5 0.088 1.9E-06 57.0 7.1 125 332-472 1-166 (425)
66 TIGR02356 adenyl_thiF thiazole 94.4 0.062 1.3E-06 52.1 5.1 104 327-446 17-144 (202)
67 PRK06223 malate dehydrogenase; 94.4 0.096 2.1E-06 53.2 6.7 120 332-476 3-148 (307)
68 PRK08605 D-lactate dehydrogena 94.1 0.74 1.6E-05 48.1 12.6 153 263-447 59-237 (332)
69 PTZ00325 malate dehydrogenase; 94.0 0.33 7.1E-06 50.9 9.9 107 329-449 6-128 (321)
70 TIGR02354 thiF_fam2 thiamine b 93.8 0.089 1.9E-06 51.3 5.0 108 327-454 17-127 (200)
71 TIGR00561 pntA NAD(P) transhyd 93.8 0.23 5.1E-06 55.2 8.8 175 237-446 80-284 (511)
72 PRK08328 hypothetical protein; 93.8 0.035 7.7E-07 55.0 2.2 54 293-375 7-60 (231)
73 PRK08223 hypothetical protein; 93.7 0.12 2.7E-06 53.5 6.1 127 290-447 4-153 (287)
74 PRK12475 thiamine/molybdopteri 93.7 0.16 3.5E-06 53.3 6.9 99 327-444 20-147 (338)
75 cd01079 NAD_bind_m-THF_DH NAD 93.5 0.43 9.4E-06 47.2 9.0 103 312-431 34-147 (197)
76 COG0334 GdhA Glutamate dehydro 93.4 2.3 5E-05 46.3 15.2 188 251-461 110-325 (411)
77 PRK00257 erythronate-4-phospha 93.4 0.59 1.3E-05 50.2 10.7 127 298-460 80-217 (381)
78 PRK15076 alpha-galactosidase; 93.4 0.15 3.3E-06 55.3 6.2 129 332-476 2-174 (431)
79 PLN02928 oxidoreductase family 93.3 1.1 2.3E-05 47.4 12.2 167 308-501 120-314 (347)
80 PRK14189 bifunctional 5,10-met 93.1 0.31 6.8E-06 50.5 7.8 92 311-446 138-230 (285)
81 PRK08644 thiamine biosynthesis 93.1 0.22 4.7E-06 49.0 6.3 38 327-375 24-61 (212)
82 PRK12749 quinate/shikimate deh 93.0 0.21 4.5E-06 51.4 6.4 49 316-375 109-157 (288)
83 PRK08762 molybdopterin biosynt 92.9 0.15 3.3E-06 53.9 5.3 104 327-446 131-258 (376)
84 PF02826 2-Hacid_dh_C: D-isome 92.9 0.38 8.3E-06 45.5 7.5 115 322-468 27-147 (178)
85 TIGR02992 ectoine_eutC ectoine 92.8 0.51 1.1E-05 49.1 8.8 115 317-458 117-237 (326)
86 PRK15438 erythronate-4-phospha 92.7 0.94 2E-05 48.7 11.0 117 308-460 93-217 (378)
87 PRK14178 bifunctional 5,10-met 92.7 0.31 6.8E-06 50.4 7.1 93 310-446 131-224 (279)
88 PRK14194 bifunctional 5,10-met 92.6 0.42 9.2E-06 49.9 8.0 94 311-448 139-234 (301)
89 PRK06129 3-hydroxyacyl-CoA deh 92.6 0.23 4.9E-06 50.8 5.9 165 332-514 3-213 (308)
90 cd05297 GH4_alpha_glucosidase_ 92.6 0.27 5.8E-06 53.0 6.7 125 332-474 1-170 (423)
91 cd01487 E1_ThiF_like E1_ThiF_l 92.6 0.38 8.3E-06 45.7 7.0 32 333-375 1-32 (174)
92 PRK09260 3-hydroxybutyryl-CoA 92.5 0.28 6E-06 49.6 6.4 32 332-375 2-33 (288)
93 PRK14619 NAD(P)H-dependent gly 92.4 1.1 2.5E-05 45.7 10.7 33 331-375 4-36 (308)
94 PRK14176 bifunctional 5,10-met 92.4 0.51 1.1E-05 49.0 8.2 90 311-444 144-234 (287)
95 TIGR01915 npdG NADPH-dependent 92.3 0.69 1.5E-05 45.0 8.6 96 333-451 2-106 (219)
96 PRK14027 quinate/shikimate deh 92.3 0.28 6.1E-06 50.3 6.1 49 316-375 112-160 (283)
97 cd00704 MDH Malate dehydrogena 92.3 0.55 1.2E-05 49.1 8.4 121 333-463 2-140 (323)
98 PRK06130 3-hydroxybutyryl-CoA 92.2 0.53 1.1E-05 47.9 8.0 32 332-375 5-36 (311)
99 PRK05600 thiamine biosynthesis 92.2 0.35 7.5E-06 51.6 6.9 102 327-444 37-162 (370)
100 PRK12548 shikimate 5-dehydroge 92.0 0.35 7.6E-06 49.4 6.4 57 300-375 103-159 (289)
101 PF01210 NAD_Gly3P_dh_N: NAD-d 91.8 0.18 3.8E-06 46.8 3.7 85 333-437 1-93 (157)
102 TIGR01763 MalateDH_bact malate 91.7 0.37 8.1E-06 49.8 6.3 125 332-474 2-145 (305)
103 PRK07688 thiamine/molybdopteri 91.6 0.23 5E-06 52.2 4.8 39 327-376 20-58 (339)
104 TIGR01758 MDH_euk_cyt malate d 91.6 1.1 2.3E-05 47.1 9.5 135 333-478 1-156 (324)
105 COG0111 SerA Phosphoglycerate 91.5 1.3 2.9E-05 46.5 10.1 111 299-434 89-224 (324)
106 PRK00258 aroE shikimate 5-dehy 91.5 0.45 9.7E-06 48.2 6.5 88 315-422 106-196 (278)
107 PF00899 ThiF: ThiF family; I 91.3 0.35 7.6E-06 43.4 5.0 37 330-377 1-37 (135)
108 cd05293 LDH_1 A subgroup of L- 91.2 0.53 1.1E-05 49.0 6.9 125 332-474 4-147 (312)
109 cd01337 MDH_glyoxysomal_mitoch 91.2 1 2.2E-05 47.1 8.9 123 333-473 2-147 (310)
110 PRK14183 bifunctional 5,10-met 90.7 0.89 1.9E-05 47.2 7.8 91 310-444 136-227 (281)
111 PF01262 AlaDh_PNT_C: Alanine 90.7 0.13 2.9E-06 48.1 1.7 90 328-434 17-130 (168)
112 PRK14184 bifunctional 5,10-met 90.4 0.82 1.8E-05 47.5 7.3 96 311-446 137-233 (286)
113 PRK07574 formate dehydrogenase 90.2 2.6 5.6E-05 45.4 11.1 142 326-500 187-335 (385)
114 cd01336 MDH_cytoplasmic_cytoso 90.2 1.9 4.1E-05 45.1 9.9 135 332-476 3-157 (325)
115 COG0169 AroE Shikimate 5-dehyd 90.2 0.65 1.4E-05 48.1 6.3 85 317-422 110-201 (283)
116 PRK14190 bifunctional 5,10-met 90.1 1 2.3E-05 46.7 7.8 91 311-445 138-229 (284)
117 PRK06035 3-hydroxyacyl-CoA deh 90.1 1.1 2.4E-05 45.3 7.9 32 332-375 4-35 (291)
118 PRK05442 malate dehydrogenase; 90.1 1 2.3E-05 47.2 7.9 129 332-471 5-155 (326)
119 cd01338 MDH_choloroplast_like 90.0 1.6 3.5E-05 45.7 9.1 130 332-471 3-153 (322)
120 PRK14618 NAD(P)H-dependent gly 89.9 0.46 1E-05 48.8 5.0 95 332-449 5-107 (328)
121 TIGR01772 MDH_euk_gproteo mala 89.8 1.8 4E-05 45.2 9.4 128 333-476 1-148 (312)
122 PRK14179 bifunctional 5,10-met 89.8 1.1 2.3E-05 46.6 7.5 92 311-446 138-230 (284)
123 COG0686 Ald Alanine dehydrogen 89.7 0.59 1.3E-05 49.6 5.6 106 329-458 166-290 (371)
124 cd05298 GH4_GlvA_pagL_like Gly 89.7 0.72 1.6E-05 50.4 6.6 129 332-476 1-171 (437)
125 PRK07634 pyrroline-5-carboxyla 89.7 0.59 1.3E-05 45.5 5.4 100 330-449 3-102 (245)
126 PRK14851 hypothetical protein; 89.5 1.3 2.8E-05 51.0 8.6 122 327-465 39-194 (679)
127 PRK08291 ectoine utilization p 89.4 1.4 3E-05 45.9 8.1 115 317-458 120-240 (330)
128 cd05292 LDH_2 A subgroup of L- 89.3 0.71 1.5E-05 47.6 5.8 127 333-476 2-145 (308)
129 PRK02842 light-independent pro 89.2 3.1 6.7E-05 44.9 10.8 116 262-419 248-368 (427)
130 PF02882 THF_DHG_CYH_C: Tetrah 89.1 1.6 3.4E-05 41.7 7.6 83 311-431 16-99 (160)
131 PRK08374 homoserine dehydrogen 89.1 2.2 4.9E-05 44.8 9.5 105 332-443 3-120 (336)
132 cd05290 LDH_3 A subgroup of L- 89.0 1.1 2.3E-05 46.7 7.0 126 333-476 1-148 (307)
133 PRK14174 bifunctional 5,10-met 88.9 1.3 2.8E-05 46.2 7.5 95 312-446 140-235 (295)
134 PRK14188 bifunctional 5,10-met 88.9 1.3 2.7E-05 46.3 7.3 92 311-446 138-230 (296)
135 TIGR00872 gnd_rel 6-phosphoglu 88.8 1.5 3.2E-05 44.9 7.7 99 333-457 2-102 (298)
136 PRK14177 bifunctional 5,10-met 88.6 1.7 3.6E-05 45.2 8.0 82 312-431 140-222 (284)
137 TIGR01759 MalateDH-SF1 malate 88.6 2.3 4.9E-05 44.7 9.0 122 332-463 4-143 (323)
138 PRK07531 bifunctional 3-hydrox 88.5 1.1 2.5E-05 49.2 7.1 96 332-446 5-115 (495)
139 PRK14172 bifunctional 5,10-met 88.4 1.9 4E-05 44.8 8.1 90 311-444 138-228 (278)
140 PRK11880 pyrroline-5-carboxyla 88.3 1.9 4.2E-05 42.7 8.0 120 332-480 3-123 (267)
141 PRK12550 shikimate 5-dehydroge 88.3 1.1 2.3E-05 46.0 6.3 48 316-375 108-155 (272)
142 PLN02602 lactate dehydrogenase 88.2 1.1 2.4E-05 47.5 6.6 125 332-475 38-182 (350)
143 PRK07066 3-hydroxybutyryl-CoA 88.0 1.4 3.1E-05 46.2 7.1 31 332-374 8-38 (321)
144 PRK13243 glyoxylate reductase; 87.8 5.8 0.00013 41.6 11.5 141 326-503 145-293 (333)
145 PLN02306 hydroxypyruvate reduc 87.8 4.1 8.9E-05 43.9 10.6 174 297-501 107-323 (386)
146 PRK14171 bifunctional 5,10-met 87.6 2.1 4.5E-05 44.7 7.9 92 309-444 137-229 (288)
147 cd00757 ThiF_MoeB_HesA_family 87.6 0.64 1.4E-05 45.7 4.1 38 327-375 17-54 (228)
148 PLN02516 methylenetetrahydrofo 87.5 2.1 4.6E-05 44.8 7.9 91 310-444 146-237 (299)
149 PF02056 Glyco_hydro_4: Family 87.3 0.96 2.1E-05 44.1 5.0 110 333-456 1-152 (183)
150 PRK14187 bifunctional 5,10-met 87.3 2.3 5.1E-05 44.4 8.1 90 311-444 140-230 (294)
151 TIGR02355 moeB molybdopterin s 87.2 0.6 1.3E-05 46.8 3.7 38 327-375 20-57 (240)
152 PTZ00345 glycerol-3-phosphate 87.2 2.3 5E-05 45.5 8.2 25 329-353 9-33 (365)
153 PRK15317 alkyl hydroperoxide r 87.1 0.94 2E-05 49.7 5.4 85 279-375 148-243 (517)
154 PRK14106 murD UDP-N-acetylmura 87.1 2.3 4.9E-05 45.4 8.1 112 328-473 2-116 (450)
155 PRK00094 gpsA NAD(P)H-dependen 87.0 1.2 2.6E-05 45.0 5.7 98 333-450 3-109 (325)
156 PRK12921 2-dehydropantoate 2-r 87.0 2.9 6.3E-05 41.9 8.4 101 333-450 2-106 (305)
157 PRK06141 ornithine cyclodeamin 86.9 3 6.4E-05 43.2 8.7 114 329-470 123-241 (314)
158 cd01485 E1-1_like Ubiquitin ac 86.8 0.62 1.3E-05 45.2 3.4 39 327-376 15-53 (198)
159 PRK14166 bifunctional 5,10-met 86.8 2.5 5.4E-05 43.9 7.9 94 309-446 135-229 (282)
160 cd01339 LDH-like_MDH L-lactate 86.8 1.4 3E-05 45.0 6.1 119 334-474 1-142 (300)
161 PRK14193 bifunctional 5,10-met 86.6 2.4 5.3E-05 44.1 7.8 85 311-431 138-223 (284)
162 TIGR03140 AhpF alkyl hydropero 86.6 1.1 2.3E-05 49.3 5.5 85 265-352 138-233 (515)
163 PRK14170 bifunctional 5,10-met 86.4 2.7 5.8E-05 43.8 8.0 92 310-445 136-228 (284)
164 KOG0029 Amine oxidase [Seconda 86.3 0.38 8.2E-06 53.3 1.8 37 329-368 13-49 (501)
165 PRK06522 2-dehydropantoate 2-r 86.2 2.4 5.1E-05 42.4 7.3 101 333-450 2-104 (304)
166 PRK12480 D-lactate dehydrogena 86.1 5.5 0.00012 41.8 10.2 139 298-470 91-256 (330)
167 COG0345 ProC Pyrroline-5-carbo 86.0 3.9 8.4E-05 42.2 8.8 93 332-446 2-95 (266)
168 cd01492 Aos1_SUMO Ubiquitin ac 85.9 0.68 1.5E-05 44.9 3.2 76 327-419 17-96 (197)
169 PRK15116 sulfur acceptor prote 85.9 1.9 4.1E-05 44.4 6.5 106 327-451 26-135 (268)
170 PRK01710 murD UDP-N-acetylmura 85.5 4.9 0.00011 43.5 9.8 111 329-473 12-125 (458)
171 PRK15469 ghrA bifunctional gly 85.4 6.9 0.00015 40.8 10.4 158 309-500 98-277 (312)
172 TIGR01408 Ube1 ubiquitin-activ 85.4 0.41 8.9E-06 57.2 1.7 43 327-375 415-457 (1008)
173 PRK05690 molybdopterin biosynt 85.2 1.1 2.4E-05 45.0 4.4 38 327-375 28-65 (245)
174 PRK14185 bifunctional 5,10-met 85.2 3.6 7.7E-05 43.1 8.2 94 311-444 137-231 (293)
175 PRK06436 glycerate dehydrogena 85.1 12 0.00026 39.0 12.0 92 326-449 117-212 (303)
176 PRK14168 bifunctional 5,10-met 85.0 3.4 7.3E-05 43.3 8.0 98 309-446 139-237 (297)
177 KOG0685 Flavin-containing amin 85.0 0.43 9.4E-06 52.7 1.5 26 327-352 17-42 (498)
178 TIGR01771 L-LDH-NAD L-lactate 85.0 1.5 3.2E-05 45.4 5.3 125 336-475 1-141 (299)
179 PRK09880 L-idonate 5-dehydroge 84.6 15 0.00032 37.6 12.3 128 318-470 158-288 (343)
180 cd05294 LDH-like_MDH_nadp A la 84.6 4.8 0.0001 41.7 8.9 121 332-473 1-147 (309)
181 PRK08410 2-hydroxyacid dehydro 84.4 9.9 0.00021 39.5 11.0 135 298-468 85-252 (311)
182 PF07992 Pyr_redox_2: Pyridine 84.2 1.4 3.1E-05 40.6 4.4 32 333-376 1-32 (201)
183 PRK07680 late competence prote 84.1 2.4 5.2E-05 42.5 6.3 98 333-450 2-100 (273)
184 PRK06487 glycerate dehydrogena 84.1 7.3 0.00016 40.6 10.0 135 327-500 144-286 (317)
185 TIGR00507 aroE shikimate 5-deh 83.7 2.5 5.5E-05 42.5 6.2 49 315-375 101-149 (270)
186 PRK14169 bifunctional 5,10-met 83.6 4.5 9.7E-05 42.1 8.1 84 310-431 135-219 (282)
187 cd00300 LDH_like L-lactate deh 83.4 2.3 5E-05 43.8 5.9 124 334-474 1-142 (300)
188 cd01483 E1_enzyme_family Super 83.4 1.5 3.3E-05 39.6 4.1 69 333-418 1-73 (143)
189 PRK09599 6-phosphogluconate de 83.1 6.1 0.00013 40.3 8.8 93 333-449 2-97 (301)
190 PRK14180 bifunctional 5,10-met 82.9 4.8 0.0001 41.9 8.0 85 309-431 136-221 (282)
191 TIGR03366 HpnZ_proposed putati 82.8 11 0.00024 37.4 10.3 133 316-471 107-243 (280)
192 cd00755 YgdL_like Family of ac 82.8 1.4 3E-05 44.2 3.9 104 328-446 8-135 (231)
193 PRK09310 aroDE bifunctional 3- 82.6 2.5 5.5E-05 46.5 6.2 47 316-374 317-363 (477)
194 PRK05597 molybdopterin biosynt 82.6 1.3 2.9E-05 46.7 3.9 104 327-446 24-151 (355)
195 PRK14620 NAD(P)H-dependent gly 82.5 3.1 6.8E-05 42.6 6.5 31 333-375 2-32 (326)
196 PLN03139 formate dehydrogenase 82.5 10 0.00022 41.0 10.5 145 326-502 194-344 (386)
197 PRK13581 D-3-phosphoglycerate 82.3 10 0.00023 42.2 10.9 172 298-502 86-282 (526)
198 PRK06153 hypothetical protein; 82.3 2.3 5E-05 46.1 5.6 38 327-375 172-209 (393)
199 PRK14182 bifunctional 5,10-met 82.1 5.8 0.00013 41.3 8.2 83 311-431 137-220 (282)
200 COG0039 Mdh Malate/lactate deh 82.1 4 8.7E-05 43.0 7.1 103 332-449 1-121 (313)
201 PRK07679 pyrroline-5-carboxyla 82.1 6.9 0.00015 39.4 8.6 35 331-374 3-38 (279)
202 PLN02616 tetrahydrofolate dehy 82.0 4.9 0.00011 43.3 7.8 90 311-444 211-301 (364)
203 TIGR01381 E1_like_apg7 E1-like 82.0 1.4 2.9E-05 50.7 3.9 40 327-377 334-373 (664)
204 PRK14173 bifunctional 5,10-met 82.0 5.4 0.00012 41.6 8.0 83 311-431 135-218 (287)
205 PRK11790 D-3-phosphoglycerate 82.0 17 0.00036 39.4 12.0 171 297-503 96-297 (409)
206 PLN00112 malate dehydrogenase 81.8 5.3 0.00012 44.0 8.2 136 331-476 100-255 (444)
207 TIGR02371 ala_DH_arch alanine 81.8 9 0.00019 40.0 9.6 104 330-458 127-235 (325)
208 PRK12439 NAD(P)H-dependent gly 81.7 2.1 4.5E-05 44.8 4.9 104 331-450 7-115 (341)
209 PRK14181 bifunctional 5,10-met 81.6 6.4 0.00014 41.1 8.3 98 309-446 131-229 (287)
210 PRK14167 bifunctional 5,10-met 81.2 6.2 0.00013 41.4 8.1 96 311-446 137-233 (297)
211 TIGR01327 PGDH D-3-phosphoglyc 81.0 12 0.00025 41.8 10.6 143 298-470 84-251 (525)
212 PRK07340 ornithine cyclodeamin 80.7 12 0.00026 38.7 10.0 105 329-459 123-231 (304)
213 PRK08229 2-dehydropantoate 2-r 80.5 3.8 8.2E-05 42.0 6.2 104 332-452 3-113 (341)
214 PRK07530 3-hydroxybutyryl-CoA 80.4 11 0.00023 38.2 9.3 32 332-375 5-36 (292)
215 PRK15409 bifunctional glyoxyla 79.8 17 0.00037 38.1 10.8 113 326-470 140-258 (323)
216 COG1486 CelF Alpha-galactosida 79.7 1.5 3.3E-05 48.1 3.2 130 330-474 2-172 (442)
217 PRK06932 glycerate dehydrogena 79.7 20 0.00043 37.4 11.2 138 327-502 143-290 (314)
218 PF13738 Pyr_redox_3: Pyridine 79.6 2.1 4.6E-05 39.7 3.8 30 335-375 1-30 (203)
219 PRK07878 molybdopterin biosynt 79.3 1.7 3.7E-05 46.5 3.4 104 327-446 38-165 (392)
220 PRK14186 bifunctional 5,10-met 79.0 8.2 0.00018 40.5 8.1 91 311-445 138-229 (297)
221 PLN02819 lysine-ketoglutarate 78.8 9.9 0.00022 46.1 9.7 116 315-435 178-326 (1042)
222 PRK06823 ornithine cyclodeamin 78.8 14 0.0003 38.7 9.8 105 330-459 127-236 (315)
223 PRK07411 hypothetical protein; 78.7 1.8 4E-05 46.3 3.4 103 327-445 34-160 (390)
224 PF01494 FAD_binding_3: FAD bi 78.6 2.7 5.9E-05 41.5 4.4 35 332-378 2-36 (356)
225 cd08237 ribitol-5-phosphate_DH 78.4 48 0.001 34.1 13.5 35 330-374 163-197 (341)
226 PRK12490 6-phosphogluconate de 78.3 11 0.00023 38.6 8.7 93 333-449 2-97 (299)
227 KOG1495 Lactate dehydrogenase 78.0 8.2 0.00018 40.6 7.6 130 327-479 16-169 (332)
228 PLN02527 aspartate carbamoyltr 77.9 65 0.0014 33.7 14.3 137 262-421 86-228 (306)
229 PRK06407 ornithine cyclodeamin 77.9 9.7 0.00021 39.5 8.3 104 330-458 116-225 (301)
230 PLN02897 tetrahydrofolate dehy 77.7 8.1 0.00018 41.4 7.7 90 311-444 194-284 (345)
231 cd01491 Ube1_repeat1 Ubiquitin 77.6 2.2 4.7E-05 44.3 3.4 38 327-375 15-52 (286)
232 PF00070 Pyr_redox: Pyridine n 77.5 4.5 9.8E-05 32.9 4.7 35 333-379 1-35 (80)
233 PTZ00142 6-phosphogluconate de 77.4 4.6 9.9E-05 44.6 6.0 98 332-449 2-104 (470)
234 PRK06270 homoserine dehydrogen 77.4 19 0.0004 37.9 10.3 104 332-443 3-123 (341)
235 PLN02545 3-hydroxybutyryl-CoA 77.2 13 0.00028 37.7 8.8 32 332-375 5-36 (295)
236 PF01113 DapB_N: Dihydrodipico 77.0 5.9 0.00013 35.5 5.6 96 332-444 1-97 (124)
237 PRK08268 3-hydroxy-acyl-CoA de 76.8 4.9 0.00011 44.6 6.1 31 332-374 8-38 (507)
238 PRK09754 phenylpropionate diox 76.5 3.6 7.8E-05 43.3 4.8 36 330-375 2-37 (396)
239 COG0190 FolD 5,10-methylene-te 76.5 9.2 0.0002 39.9 7.6 123 277-443 92-225 (283)
240 PRK07231 fabG 3-ketoacyl-(acyl 76.4 6.3 0.00014 37.5 6.0 36 328-375 2-38 (251)
241 KOG0069 Glyoxylate/hydroxypyru 76.3 17 0.00036 38.9 9.6 163 309-506 120-309 (336)
242 PF03446 NAD_binding_2: NAD bi 76.3 2.7 5.9E-05 39.0 3.4 102 332-461 2-107 (163)
243 PRK02472 murD UDP-N-acetylmura 76.2 7.9 0.00017 41.2 7.3 35 329-375 3-37 (447)
244 PRK07502 cyclohexadienyl dehyd 75.9 11 0.00024 38.5 7.9 34 332-375 7-40 (307)
245 TIGR03376 glycerol3P_DH glycer 75.7 5.6 0.00012 42.2 5.9 20 333-352 1-20 (342)
246 PLN02520 bifunctional 3-dehydr 75.4 5.9 0.00013 44.3 6.3 48 316-375 354-411 (529)
247 cd01484 E1-2_like Ubiquitin ac 75.0 3.8 8.3E-05 41.2 4.3 32 333-375 1-32 (234)
248 TIGR01292 TRX_reduct thioredox 74.4 3.8 8.3E-05 40.1 4.1 31 333-375 2-32 (300)
249 COG5322 Predicted dehydrogenas 74.3 4.2 9E-05 42.7 4.4 45 308-352 144-189 (351)
250 COG2423 Predicted ornithine cy 74.2 15 0.00032 39.1 8.5 121 315-461 116-241 (330)
251 PF02737 3HCDH_N: 3-hydroxyacy 74.1 4.4 9.6E-05 38.7 4.3 110 333-461 1-124 (180)
252 COG0499 SAM1 S-adenosylhomocys 73.8 12 0.00026 40.7 7.7 120 304-458 185-306 (420)
253 PRK07877 hypothetical protein; 73.8 6.5 0.00014 45.8 6.3 101 327-446 103-229 (722)
254 TIGR02622 CDP_4_6_dhtase CDP-g 73.8 9.2 0.0002 39.2 6.8 106 329-446 2-127 (349)
255 PRK06928 pyrroline-5-carboxyla 73.1 9 0.00019 38.8 6.5 35 332-375 2-37 (277)
256 cd01486 Apg7 Apg7 is an E1-lik 73.1 4.2 9.1E-05 42.9 4.2 32 333-375 1-32 (307)
257 COG1052 LdhA Lactate dehydroge 72.8 25 0.00054 37.2 9.8 94 324-447 139-237 (324)
258 cd00377 ICL_PEPM Members of th 72.4 1.1E+02 0.0024 30.7 14.7 54 411-472 173-226 (243)
259 PRK11883 protoporphyrinogen ox 72.3 2.4 5.1E-05 44.4 2.2 22 332-353 1-22 (451)
260 TIGR02028 ChlP geranylgeranyl 72.2 4.3 9.3E-05 43.0 4.1 21 333-353 2-22 (398)
261 PRK10886 DnaA initiator-associ 72.1 16 0.00034 35.9 7.7 100 329-443 39-141 (196)
262 TIGR00873 gnd 6-phosphoglucona 72.1 11 0.00023 41.8 7.2 94 334-447 2-99 (467)
263 PRK06046 alanine dehydrogenase 71.8 24 0.00052 36.8 9.4 103 330-458 128-236 (326)
264 cd01488 Uba3_RUB Ubiquitin act 71.6 4.6 0.0001 42.1 4.1 32 333-375 1-32 (291)
265 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.6 18 0.00038 40.4 8.8 34 330-375 4-37 (503)
266 PRK08618 ornithine cyclodeamin 71.4 10 0.00022 39.5 6.5 102 330-457 126-233 (325)
267 PRK06476 pyrroline-5-carboxyla 71.3 12 0.00025 37.2 6.7 33 333-374 2-34 (258)
268 TIGR03693 ocin_ThiF_like putat 71.3 18 0.0004 41.6 8.9 153 256-442 68-235 (637)
269 TIGR02023 BchP-ChlP geranylger 71.1 4.9 0.00011 42.1 4.2 21 333-353 2-22 (388)
270 PRK12409 D-amino acid dehydrog 70.6 5.4 0.00012 41.7 4.4 33 332-376 2-34 (410)
271 PF03447 NAD_binding_3: Homose 70.3 8.7 0.00019 33.5 4.9 88 338-443 1-88 (117)
272 PF05834 Lycopene_cycl: Lycope 69.7 5.5 0.00012 41.8 4.2 35 334-378 2-36 (374)
273 COG1063 Tdh Threonine dehydrog 69.6 8 0.00017 40.5 5.4 100 305-422 143-249 (350)
274 COG0240 GpsA Glycerol-3-phosph 69.4 9.4 0.0002 40.7 5.8 94 332-446 2-105 (329)
275 cd01489 Uba2_SUMO Ubiquitin ac 68.9 6.2 0.00014 41.5 4.4 32 333-375 1-32 (312)
276 COG0476 ThiF Dinucleotide-util 68.7 6.5 0.00014 39.1 4.3 38 327-375 26-63 (254)
277 TIGR01757 Malate-DH_plant mala 68.3 23 0.00051 38.4 8.6 137 330-478 43-201 (387)
278 PRK01713 ornithine carbamoyltr 68.2 32 0.00069 36.5 9.5 138 262-419 91-233 (334)
279 PRK06847 hypothetical protein; 68.1 6.8 0.00015 40.2 4.4 22 331-352 4-25 (375)
280 PRK09564 coenzyme A disulfide 67.9 7.2 0.00016 41.4 4.7 36 332-377 1-36 (444)
281 KOG2337 Ubiquitin activating E 67.6 4.6 9.9E-05 45.5 3.1 38 329-377 338-375 (669)
282 TIGR00465 ilvC ketol-acid redu 67.5 18 0.00039 37.9 7.4 25 329-353 1-25 (314)
283 KOG2250 Glutamate/leucine/phen 67.4 46 0.00099 37.5 10.6 186 256-461 158-379 (514)
284 PRK05808 3-hydroxybutyryl-CoA 67.3 27 0.00059 35.1 8.4 32 332-375 4-35 (282)
285 PRK06184 hypothetical protein; 67.2 6.9 0.00015 42.5 4.4 34 330-375 2-35 (502)
286 PRK06249 2-dehydropantoate 2-r 67.0 17 0.00038 37.2 7.1 104 330-450 4-110 (313)
287 TIGR01214 rmlD dTDP-4-dehydror 66.9 22 0.00047 34.9 7.5 59 333-421 1-60 (287)
288 PRK07236 hypothetical protein; 66.9 8.1 0.00017 40.3 4.7 25 329-353 4-28 (386)
289 COG0644 FixC Dehydrogenases (f 66.8 7.1 0.00015 41.2 4.4 36 331-378 3-38 (396)
290 PF02423 OCD_Mu_crystall: Orni 66.8 8.9 0.00019 39.8 5.0 104 331-459 128-238 (313)
291 PRK07233 hypothetical protein; 66.8 6.2 0.00013 40.9 3.9 31 333-375 1-31 (434)
292 PLN02688 pyrroline-5-carboxyla 66.7 21 0.00046 35.3 7.5 94 333-449 2-98 (266)
293 PRK15181 Vi polysaccharide bio 66.6 25 0.00053 36.3 8.1 105 325-446 9-141 (348)
294 PRK06718 precorrin-2 dehydroge 66.5 8 0.00017 37.8 4.3 35 328-374 7-41 (202)
295 PRK08163 salicylate hydroxylas 66.5 7.4 0.00016 40.3 4.3 22 331-352 4-25 (396)
296 TIGR03169 Nterm_to_SelD pyridi 66.1 3.9 8.5E-05 42.0 2.2 36 333-377 1-36 (364)
297 PRK04176 ribulose-1,5-biphosph 66.0 7.2 0.00016 39.3 4.0 35 331-377 25-59 (257)
298 COG3288 PntA NAD/NADP transhyd 65.8 13 0.00027 39.8 5.8 50 402-456 237-292 (356)
299 PRK13512 coenzyme A disulfide 65.7 6.4 0.00014 42.2 3.8 33 333-375 3-35 (438)
300 PLN02172 flavin-containing mon 65.5 8.4 0.00018 42.2 4.7 26 328-353 7-32 (461)
301 TIGR01283 nifE nitrogenase mol 65.4 16 0.00035 39.8 6.8 85 319-419 314-403 (456)
302 PRK06719 precorrin-2 dehydroge 65.4 8.9 0.00019 36.1 4.3 35 328-374 10-44 (157)
303 PTZ00431 pyrroline carboxylate 65.3 22 0.00048 35.6 7.3 38 330-375 2-39 (260)
304 PRK11199 tyrA bifunctional cho 65.3 31 0.00068 36.8 8.8 33 331-375 98-131 (374)
305 PF01266 DAO: FAD dependent ox 65.2 9.6 0.00021 37.7 4.7 32 333-376 1-32 (358)
306 PF03435 Saccharop_dh: Sacchar 65.1 3.3 7.2E-05 43.4 1.5 115 334-472 1-123 (386)
307 PRK05479 ketol-acid reductoiso 65.1 24 0.00052 37.5 7.8 26 328-353 14-39 (330)
308 PRK07364 2-octaprenyl-6-methox 64.8 7 0.00015 40.7 3.8 23 331-353 18-40 (415)
309 KOG2304 3-hydroxyacyl-CoA dehy 64.7 5.6 0.00012 41.0 2.9 33 331-375 11-43 (298)
310 PRK09126 hypothetical protein; 64.6 8 0.00017 40.0 4.2 23 331-353 3-25 (392)
311 TIGR01790 carotene-cycl lycope 64.1 7.6 0.00016 40.2 3.9 31 334-376 2-32 (388)
312 PLN02268 probable polyamine ox 64.1 3.1 6.6E-05 44.0 1.0 21 333-353 2-22 (435)
313 PF13454 NAD_binding_9: FAD-NA 64.0 6.7 0.00015 36.2 3.1 36 335-377 1-36 (156)
314 PRK12771 putative glutamate sy 63.9 13 0.00028 41.3 5.9 35 329-375 135-169 (564)
315 PRK06475 salicylate hydroxylas 63.8 7.9 0.00017 40.6 4.0 21 332-352 3-23 (400)
316 TIGR01470 cysG_Nterm siroheme 63.1 10 0.00022 37.2 4.3 36 328-375 6-41 (205)
317 COG0569 TrkA K+ transport syst 62.8 12 0.00026 37.2 4.8 95 332-449 1-104 (225)
318 TIGR01285 nifN nitrogenase mol 62.7 13 0.00028 40.4 5.5 84 319-420 299-382 (432)
319 COG2072 TrkA Predicted flavopr 62.7 10 0.00022 41.3 4.6 36 330-376 7-42 (443)
320 PF13450 NAD_binding_8: NAD(P) 62.6 11 0.00023 30.5 3.7 30 336-377 1-30 (68)
321 PLN00093 geranylgeranyl diphos 62.4 9 0.0002 41.7 4.2 22 332-353 40-61 (450)
322 TIGR02032 GG-red-SF geranylger 62.2 9.6 0.00021 37.0 4.0 32 333-376 2-33 (295)
323 COG1179 Dinucleotide-utilizing 62.2 6.9 0.00015 40.4 3.0 108 328-449 27-162 (263)
324 KOG2012 Ubiquitin activating e 62.1 5.1 0.00011 47.2 2.4 118 327-469 426-552 (1013)
325 PF01946 Thi4: Thi4 family; PD 62.0 12 0.00025 38.1 4.6 37 330-378 16-52 (230)
326 KOG0743 AAA+-type ATPase [Post 62.0 13 0.00028 41.3 5.2 104 199-339 241-345 (457)
327 PRK12810 gltD glutamate syntha 62.0 10 0.00022 41.2 4.5 34 330-375 142-175 (471)
328 PRK05732 2-octaprenyl-6-methox 61.7 11 0.00023 38.9 4.4 36 331-375 3-38 (395)
329 PRK07045 putative monooxygenas 61.6 10 0.00022 39.4 4.3 22 332-353 6-27 (388)
330 PRK07589 ornithine cyclodeamin 61.4 45 0.00097 35.6 9.1 104 330-458 128-238 (346)
331 TIGR01316 gltA glutamate synth 61.4 12 0.00025 40.6 4.8 36 328-375 130-165 (449)
332 PRK12769 putative oxidoreducta 61.2 10 0.00022 43.1 4.5 34 330-375 326-359 (654)
333 PRK06753 hypothetical protein; 61.2 10 0.00022 38.9 4.2 21 333-353 2-22 (373)
334 PRK12491 pyrroline-5-carboxyla 61.1 34 0.00075 34.8 7.9 35 332-374 3-37 (272)
335 TIGR01181 dTDP_gluc_dehyt dTDP 60.8 36 0.00078 33.4 7.8 77 333-421 1-83 (317)
336 TIGR01505 tartro_sem_red 2-hyd 60.7 26 0.00057 35.4 6.9 31 333-375 1-31 (291)
337 PRK12828 short chain dehydroge 60.6 16 0.00035 34.2 5.1 36 328-375 4-40 (239)
338 TIGR00292 thiazole biosynthesi 60.6 10 0.00022 38.2 4.0 37 330-378 20-56 (254)
339 PRK07608 ubiquinone biosynthes 60.0 9.9 0.00021 39.2 3.9 32 332-375 6-37 (388)
340 PRK06416 dihydrolipoamide dehy 59.7 11 0.00023 40.5 4.1 33 332-376 5-37 (462)
341 PRK05993 short chain dehydroge 59.7 21 0.00047 35.2 6.0 32 332-375 5-37 (277)
342 PRK10157 putative oxidoreducta 59.7 10 0.00022 40.7 4.0 22 332-353 6-27 (428)
343 PRK01438 murD UDP-N-acetylmura 59.7 13 0.00029 40.1 4.9 28 325-352 10-37 (480)
344 PRK04965 NADH:flavorubredoxin 59.6 11 0.00025 39.2 4.2 35 332-376 3-37 (377)
345 PRK05866 short chain dehydroge 59.3 22 0.00048 35.8 6.1 38 326-375 35-73 (293)
346 PRK07251 pyridine nucleotide-d 59.1 12 0.00025 40.0 4.3 33 332-376 4-36 (438)
347 KOG2018 Predicted dinucleotide 59.1 11 0.00023 40.5 3.8 40 327-377 70-109 (430)
348 TIGR02818 adh_III_F_hyde S-(hy 58.8 47 0.001 34.5 8.6 36 328-374 183-218 (368)
349 cd01968 Nitrogenase_NifE_I Nit 58.5 15 0.00032 39.4 4.9 86 319-420 275-365 (410)
350 cd01493 APPBP1_RUB Ubiquitin a 58.5 8.9 0.00019 42.0 3.3 38 327-375 16-53 (425)
351 PRK14806 bifunctional cyclohex 58.3 32 0.00069 39.5 7.9 93 332-446 4-97 (735)
352 COG3349 Uncharacterized conser 58.2 5.2 0.00011 44.6 1.5 44 332-380 1-51 (485)
353 TIGR03026 NDP-sugDHase nucleot 58.2 33 0.00072 36.7 7.5 31 333-375 2-32 (411)
354 PRK12429 3-hydroxybutyrate deh 57.9 20 0.00043 34.2 5.3 35 329-375 2-37 (258)
355 PTZ00318 NADH dehydrogenase-li 57.8 10 0.00022 40.5 3.6 23 328-350 7-29 (424)
356 PRK00536 speE spermidine synth 57.6 18 0.00038 37.3 5.1 84 332-434 74-158 (262)
357 TIGR01377 soxA_mon sarcosine o 57.6 13 0.00028 38.1 4.2 33 333-377 2-34 (380)
358 TIGR01984 UbiH 2-polyprenyl-6- 57.6 10 0.00023 38.9 3.5 20 334-353 2-21 (382)
359 PRK08773 2-octaprenyl-3-methyl 57.4 11 0.00024 39.1 3.8 34 331-376 6-39 (392)
360 PLN02676 polyamine oxidase 57.4 27 0.00058 38.5 6.8 37 330-377 25-61 (487)
361 PRK05749 3-deoxy-D-manno-octul 57.4 34 0.00073 36.0 7.4 38 401-443 311-349 (425)
362 PLN02463 lycopene beta cyclase 57.4 12 0.00025 41.1 4.0 32 332-375 29-60 (447)
363 PRK07819 3-hydroxybutyryl-CoA 57.4 14 0.0003 37.9 4.3 22 332-353 6-27 (286)
364 TIGR01373 soxB sarcosine oxida 57.3 16 0.00034 38.2 4.9 38 330-377 29-66 (407)
365 PF00743 FMO-like: Flavin-bind 57.3 12 0.00026 41.9 4.2 32 332-375 2-33 (531)
366 PRK06392 homoserine dehydrogen 57.3 45 0.00097 35.3 8.2 82 333-420 2-90 (326)
367 PRK07588 hypothetical protein; 57.2 13 0.00029 38.6 4.2 21 332-352 1-21 (391)
368 PTZ00245 ubiquitin activating 57.2 10 0.00022 39.6 3.3 39 327-376 22-60 (287)
369 PRK06185 hypothetical protein; 57.0 13 0.00028 38.8 4.1 35 330-376 5-39 (407)
370 PLN02240 UDP-glucose 4-epimera 56.9 24 0.00052 35.7 6.0 106 328-445 2-131 (352)
371 PRK11259 solA N-methyltryptoph 56.8 14 0.0003 37.9 4.2 34 331-376 3-36 (376)
372 PF01408 GFO_IDH_MocA: Oxidore 56.8 17 0.00037 31.1 4.2 91 332-443 1-91 (120)
373 PRK08849 2-octaprenyl-3-methyl 56.8 14 0.0003 38.6 4.3 32 332-375 4-35 (384)
374 TIGR01988 Ubi-OHases Ubiquinon 56.8 12 0.00026 38.2 3.7 31 334-376 2-32 (385)
375 PRK08013 oxidoreductase; Provi 56.7 13 0.00028 39.1 4.1 33 331-375 3-35 (400)
376 PRK12266 glpD glycerol-3-phosp 56.5 13 0.00028 41.0 4.2 33 332-376 7-39 (508)
377 TIGR00031 UDP-GALP_mutase UDP- 56.5 14 0.00029 39.8 4.3 31 333-375 3-33 (377)
378 COG0654 UbiH 2-polyprenyl-6-me 56.3 14 0.00029 38.9 4.2 40 331-382 2-43 (387)
379 PRK08244 hypothetical protein; 56.2 13 0.00029 40.2 4.2 22 332-353 3-24 (493)
380 TIGR01789 lycopene_cycl lycope 55.8 17 0.00037 38.4 4.9 37 334-380 2-38 (370)
381 PRK08020 ubiF 2-octaprenyl-3-m 55.7 12 0.00026 38.7 3.7 33 331-375 5-37 (391)
382 PRK11749 dihydropyrimidine deh 55.6 13 0.00029 39.9 4.1 34 330-375 139-172 (457)
383 PRK00711 D-amino acid dehydrog 55.6 15 0.00032 38.4 4.2 31 333-375 2-32 (416)
384 cd01979 Pchlide_reductase_N Pc 55.4 33 0.00072 36.7 6.9 34 319-352 264-297 (396)
385 PRK08243 4-hydroxybenzoate 3-m 55.3 16 0.00034 38.3 4.4 23 331-353 2-24 (392)
386 PRK08294 phenol 2-monooxygenas 55.3 12 0.00027 42.5 4.0 43 330-383 31-74 (634)
387 PRK12779 putative bifunctional 55.2 14 0.0003 44.4 4.4 35 329-375 304-338 (944)
388 PLN02695 GDP-D-mannose-3',5'-e 55.2 40 0.00086 35.4 7.4 97 330-446 20-137 (370)
389 PRK10262 thioredoxin reductase 55.1 11 0.00023 38.4 3.1 24 329-352 4-27 (321)
390 KOG1370 S-adenosylhomocysteine 55.1 37 0.0008 36.6 7.0 119 323-469 206-338 (434)
391 PRK06912 acoL dihydrolipoamide 55.1 14 0.00031 39.8 4.2 31 333-375 2-32 (458)
392 PRK07538 hypothetical protein; 55.0 15 0.00032 38.8 4.2 20 333-352 2-21 (413)
393 PF06690 DUF1188: Protein of u 55.0 22 0.00048 36.6 5.2 89 326-449 39-128 (252)
394 PRK12831 putative oxidoreducta 55.0 15 0.00033 40.0 4.5 34 330-375 139-172 (464)
395 PRK03803 murD UDP-N-acetylmura 54.9 48 0.001 35.6 8.1 110 330-473 5-116 (448)
396 TIGR02053 MerA mercuric reduct 54.8 15 0.00032 39.6 4.2 30 334-375 3-32 (463)
397 PRK14694 putative mercuric red 54.7 16 0.00034 39.6 4.5 34 330-375 5-38 (468)
398 PRK07523 gluconate 5-dehydroge 54.4 37 0.00081 32.7 6.6 36 328-375 7-43 (255)
399 PRK11728 hydroxyglutarate oxid 54.4 14 0.00031 38.6 3.9 34 332-375 3-36 (393)
400 PRK06138 short chain dehydroge 54.3 29 0.00063 33.1 5.7 36 328-375 2-38 (252)
401 PRK09853 putative selenate red 54.3 14 0.00031 44.7 4.4 35 329-375 537-571 (1019)
402 PRK11445 putative oxidoreducta 54.2 15 0.00033 38.0 4.1 20 333-352 3-22 (351)
403 PRK06545 prephenate dehydrogen 54.1 41 0.00089 35.5 7.3 22 332-353 1-22 (359)
404 PRK12778 putative bifunctional 54.0 18 0.00039 41.8 5.0 35 329-375 429-463 (752)
405 PRK12416 protoporphyrinogen ox 54.0 8.1 0.00018 41.3 2.1 22 332-353 2-23 (463)
406 PRK05714 2-octaprenyl-3-methyl 53.9 12 0.00026 39.1 3.3 31 333-375 4-34 (405)
407 PRK08010 pyridine nucleotide-d 53.9 14 0.00031 39.4 3.9 32 332-375 4-35 (441)
408 PRK12814 putative NADPH-depend 53.8 16 0.00035 41.7 4.5 34 330-375 192-225 (652)
409 PRK13301 putative L-aspartate 53.5 26 0.00055 36.4 5.5 116 332-472 3-122 (267)
410 PRK12829 short chain dehydroge 53.4 32 0.00069 33.0 5.9 36 328-375 8-44 (264)
411 PRK11559 garR tartronate semia 53.3 52 0.0011 33.1 7.7 32 332-375 3-34 (296)
412 TIGR01350 lipoamide_DH dihydro 53.3 16 0.00035 39.0 4.2 30 333-374 3-32 (461)
413 PLN02427 UDP-apiose/xylose syn 53.3 41 0.0009 35.0 7.1 83 322-421 5-96 (386)
414 PRK12770 putative glutamate sy 53.2 21 0.00044 37.1 4.9 35 329-375 16-50 (352)
415 PRK01747 mnmC bifunctional tRN 53.1 17 0.00036 41.3 4.5 33 332-376 261-293 (662)
416 PRK10015 oxidoreductase; Provi 53.1 15 0.00033 39.5 4.0 33 332-376 6-38 (429)
417 PRK05976 dihydrolipoamide dehy 52.7 17 0.00038 39.2 4.4 33 331-375 4-36 (472)
418 PF12831 FAD_oxidored: FAD dep 52.5 17 0.00037 39.1 4.3 33 334-378 2-34 (428)
419 PRK11154 fadJ multifunctional 52.5 1.7E+02 0.0036 34.2 12.4 92 408-507 413-512 (708)
420 PRK06292 dihydrolipoamide dehy 52.5 18 0.00038 38.8 4.4 33 331-375 3-35 (460)
421 PRK09987 dTDP-4-dehydrorhamnos 52.4 58 0.0013 32.9 7.8 86 333-446 2-104 (299)
422 PRK11101 glpA sn-glycerol-3-ph 52.4 17 0.00037 40.5 4.4 33 331-375 6-38 (546)
423 PRK03515 ornithine carbamoyltr 52.3 97 0.0021 33.0 9.7 138 262-419 90-233 (336)
424 TIGR03364 HpnW_proposed FAD de 52.2 17 0.00036 37.4 4.0 31 333-375 2-32 (365)
425 TIGR03315 Se_ygfK putative sel 52.2 16 0.00035 44.2 4.3 34 330-375 536-569 (1012)
426 PRK06841 short chain dehydroge 52.1 27 0.00058 33.5 5.2 36 328-375 12-48 (255)
427 TIGR03589 PseB UDP-N-acetylglu 52.1 34 0.00073 35.0 6.2 106 329-446 2-125 (324)
428 cd01490 Ube1_repeat2 Ubiquitin 52.1 16 0.00035 40.3 4.0 74 333-418 1-78 (435)
429 PRK13369 glycerol-3-phosphate 52.1 16 0.00035 40.0 4.1 32 332-375 7-38 (502)
430 PRK07333 2-octaprenyl-6-methox 52.0 14 0.0003 38.3 3.4 21 333-353 3-23 (403)
431 TIGR01179 galE UDP-glucose-4-e 52.0 58 0.0013 32.0 7.6 97 333-444 1-119 (328)
432 TIGR03143 AhpF_homolog putativ 52.0 16 0.00035 40.7 4.1 32 333-376 6-37 (555)
433 TIGR00441 gmhA phosphoheptose 51.9 87 0.0019 29.0 8.3 37 411-449 79-117 (154)
434 PRK08850 2-octaprenyl-6-methox 51.7 17 0.00038 38.1 4.1 33 331-375 4-36 (405)
435 KOG2711 Glycerol-3-phosphate d 51.6 56 0.0012 35.5 7.7 98 331-438 21-130 (372)
436 PRK07067 sorbitol dehydrogenas 51.5 16 0.00034 35.3 3.5 36 328-375 3-39 (257)
437 PRK13403 ketol-acid reductoiso 51.5 33 0.00071 36.8 6.0 64 327-416 12-76 (335)
438 PRK07494 2-octaprenyl-6-methox 51.5 18 0.00038 37.5 4.0 34 331-376 7-40 (388)
439 PLN02568 polyamine oxidase 51.5 9.2 0.0002 42.8 2.1 24 330-353 4-27 (539)
440 PRK13394 3-hydroxybutyrate deh 51.4 50 0.0011 31.6 6.9 36 328-375 4-40 (262)
441 TIGR01317 GOGAT_sm_gam glutama 51.3 19 0.00042 39.4 4.5 34 330-375 142-175 (485)
442 TIGR02360 pbenz_hydroxyl 4-hyd 51.3 20 0.00043 37.8 4.4 21 332-352 3-23 (390)
443 PRK14852 hypothetical protein; 51.1 13 0.00028 44.8 3.4 38 327-375 328-365 (989)
444 PRK08219 short chain dehydroge 50.9 65 0.0014 30.1 7.4 71 332-422 4-82 (227)
445 PF13241 NAD_binding_7: Putati 50.9 12 0.00026 32.4 2.4 37 328-376 4-40 (103)
446 PRK07424 bifunctional sterol d 50.9 24 0.00051 38.4 5.0 54 295-375 157-211 (406)
447 cd05006 SIS_GmhA Phosphoheptos 50.9 89 0.0019 29.3 8.3 34 411-447 101-136 (177)
448 PRK05868 hypothetical protein; 50.8 19 0.00041 37.7 4.2 21 332-352 2-22 (372)
449 COG1748 LYS9 Saccharopine dehy 50.6 23 0.0005 38.6 4.9 118 332-472 2-124 (389)
450 PRK06182 short chain dehydroge 50.5 27 0.00058 34.2 5.0 77 330-422 2-85 (273)
451 PRK08132 FAD-dependent oxidore 50.4 18 0.0004 39.8 4.2 22 331-352 23-44 (547)
452 PRK06834 hypothetical protein; 50.4 21 0.00044 39.3 4.5 35 330-376 2-36 (488)
453 PRK00141 murD UDP-N-acetylmura 50.4 20 0.00044 39.1 4.4 26 328-353 12-37 (473)
454 TIGR03736 PRTRC_ThiF PRTRC sys 50.4 23 0.00049 36.2 4.5 47 330-377 10-56 (244)
455 cd08301 alcohol_DH_plants Plan 50.3 78 0.0017 32.6 8.6 35 329-374 186-220 (369)
456 PRK09186 flagellin modificatio 49.9 18 0.0004 34.6 3.6 35 329-375 2-37 (256)
457 PLN02350 phosphogluconate dehy 49.9 49 0.0011 37.1 7.4 97 333-449 8-110 (493)
458 TIGR01282 nifD nitrogenase mol 49.9 45 0.00097 36.8 7.0 86 319-420 323-413 (466)
459 COG0562 Glf UDP-galactopyranos 49.6 19 0.00041 38.8 3.9 34 333-378 3-36 (374)
460 PRK05249 soluble pyridine nucl 49.6 19 0.00042 38.5 4.1 34 331-376 5-38 (461)
461 cd04951 GT1_WbdM_like This fam 49.2 1.4E+02 0.0031 29.3 9.8 38 401-443 254-291 (360)
462 PRK06126 hypothetical protein; 49.1 20 0.00042 39.5 4.2 35 330-376 6-40 (545)
463 COG0665 DadA Glycine/D-amino a 49.1 24 0.00053 36.1 4.6 37 330-378 3-39 (387)
464 COG4017 Uncharacterized protei 49.1 47 0.001 33.7 6.3 92 327-450 41-132 (254)
465 PRK04690 murD UDP-N-acetylmura 49.1 21 0.00045 39.1 4.3 25 329-353 6-30 (468)
466 COG1893 ApbA Ketopantoate redu 48.9 49 0.0011 34.5 6.8 100 332-453 1-108 (307)
467 TIGR01082 murC UDP-N-acetylmur 48.9 35 0.00075 36.8 5.9 110 333-485 1-112 (448)
468 COG1252 Ndh NADH dehydrogenase 48.8 18 0.00039 39.6 3.7 35 331-375 3-37 (405)
469 PF03486 HI0933_like: HI0933-l 48.8 18 0.00038 39.3 3.7 31 333-375 2-32 (409)
470 PF13407 Peripla_BP_4: Peripla 48.8 60 0.0013 31.0 7.0 159 153-339 52-217 (257)
471 PRK06183 mhpA 3-(3-hydroxyphen 48.6 21 0.00045 39.4 4.2 23 330-352 9-31 (538)
472 PRK09466 metL bifunctional asp 48.4 50 0.0011 39.2 7.5 107 330-443 457-570 (810)
473 PRK13748 putative mercuric red 48.4 20 0.00042 39.5 4.0 33 331-375 98-130 (561)
474 PRK07190 hypothetical protein; 48.3 23 0.00049 39.0 4.5 34 331-376 5-38 (487)
475 TIGR01408 Ube1 ubiquitin-activ 48.3 16 0.00034 44.3 3.4 39 327-376 20-58 (1008)
476 COG0771 MurD UDP-N-acetylmuram 47.5 1E+02 0.0023 34.2 9.3 36 328-375 4-39 (448)
477 PRK11730 fadB multifunctional 47.4 21 0.00045 41.5 4.2 88 408-503 416-511 (715)
478 PRK06617 2-octaprenyl-6-methox 47.2 20 0.00043 37.4 3.7 20 333-352 3-22 (374)
479 PF00732 GMC_oxred_N: GMC oxid 47.2 16 0.00035 36.3 2.9 35 334-379 3-37 (296)
480 cd01976 Nitrogenase_MoFe_alpha 47.1 43 0.00094 36.3 6.3 87 318-420 287-378 (421)
481 TIGR00658 orni_carb_tr ornithi 47.0 1.3E+02 0.0029 31.4 9.6 113 289-419 107-224 (304)
482 PLN02852 ferredoxin-NADP+ redu 47.0 13 0.00028 41.4 2.3 41 325-375 20-60 (491)
483 PRK00048 dihydrodipicolinate r 46.7 1.1E+02 0.0024 30.9 8.7 88 332-444 2-90 (257)
484 cd01974 Nitrogenase_MoFe_beta 46.7 23 0.00049 38.4 4.1 103 320-449 292-405 (435)
485 cd05188 MDR Medium chain reduc 46.5 50 0.0011 31.2 6.0 46 318-375 122-167 (271)
486 PRK06199 ornithine cyclodeamin 46.5 58 0.0012 35.1 7.1 84 330-431 154-250 (379)
487 PLN02172 flavin-containing mon 46.4 24 0.00051 38.8 4.2 36 329-376 202-237 (461)
488 TIGR01318 gltD_gamma_fam gluta 46.3 26 0.00057 38.2 4.6 34 330-375 140-173 (467)
489 PRK06115 dihydrolipoamide dehy 46.3 26 0.00056 38.0 4.5 32 332-375 4-35 (466)
490 PRK00683 murD UDP-N-acetylmura 46.2 93 0.002 33.3 8.6 113 331-485 3-115 (418)
491 PLN02927 antheraxanthin epoxid 45.9 19 0.0004 41.8 3.5 26 328-353 78-103 (668)
492 COG3380 Predicted NAD/FAD-depe 45.9 24 0.00052 37.4 3.9 31 333-375 3-33 (331)
493 TIGR02733 desat_CrtD C-3',4' d 45.8 27 0.00059 37.7 4.6 23 331-353 1-23 (492)
494 PRK12809 putative oxidoreducta 45.4 27 0.00058 39.7 4.6 35 330-376 309-343 (639)
495 PF02558 ApbA: Ketopantoate re 45.4 31 0.00067 30.9 4.2 98 334-448 1-103 (151)
496 CHL00076 chlB photochlorophyll 45.4 30 0.00065 38.6 4.9 80 326-419 300-382 (513)
497 PLN02653 GDP-mannose 4,6-dehyd 45.2 81 0.0018 32.1 7.7 82 328-421 3-93 (340)
498 PRK04663 murD UDP-N-acetylmura 44.8 1.2E+02 0.0026 32.6 9.2 112 329-473 4-116 (438)
499 PRK12775 putative trifunctiona 44.7 26 0.00057 42.3 4.6 34 330-375 429-462 (1006)
500 PLN02985 squalene monooxygenas 44.6 30 0.00065 38.4 4.8 23 330-352 42-64 (514)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.3e-200 Score=1562.19 Aligned_cols=477 Identities=67% Similarity=1.089 Sum_probs=470.9
Q ss_pred cccc-cccccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhh
Q 010044 42 VTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120 (519)
Q Consensus 42 ~~~~-~~~~~~G~~ll~~p~~NkG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne 120 (519)
..+| ..++.+|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+||+||++||+|||
T Consensus 20 ~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNe 99 (582)
T KOG1257|consen 20 ITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNE 99 (582)
T ss_pred ccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhh
Confidence 3444 667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCC
Q 010044 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (519)
Q Consensus 121 ~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (519)
+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||+|||||||||
T Consensus 100 rLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG 179 (582)
T KOG1257|consen 100 RLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLG 179 (582)
T ss_pred HHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeee
Q 010044 201 CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ 280 (519)
Q Consensus 201 ~~GmgI~iGKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq 280 (519)
++|||||+||++||||||||+|++|||||||||||||+||+||||+|+||+|++|++|++|+||||+||+++|||+++||
T Consensus 180 ~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIq 259 (582)
T KOG1257|consen 180 VNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQ 259 (582)
T ss_pred cCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCC
Q 010044 281 FEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 360 (519)
Q Consensus 281 fEDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~ 360 (519)
||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+
T Consensus 260 FEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl 338 (582)
T KOG1257|consen 260 FEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GL 338 (582)
T ss_pred ehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred ChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCc
Q 010044 361 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 440 (519)
Q Consensus 361 ~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (519)
|+|||+|||||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|+++|+|||||||+|+++||||
T Consensus 339 ~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erP 418 (582)
T KOG1257|consen 339 SEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERP 418 (582)
T ss_pred CHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCc
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 441 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 441 IIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|||||||||+++||||||||+||+|+|||||||||+||+++||+|+|||+||+|+|||||||+++|++++|+|+||++|
T Consensus 419 iIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~A 497 (582)
T KOG1257|consen 419 IIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAA 497 (582)
T ss_pred eEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=6.1e-193 Score=1538.38 Aligned_cols=471 Identities=76% Similarity=1.198 Sum_probs=465.6
Q ss_pred ccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHHhhh
Q 010044 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (519)
Q Consensus 49 ~~~G~~ll~~p~~NkG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 128 (519)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCccccch
Q 010044 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (519)
Q Consensus 129 ~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 208 (519)
+|++|+||||||||||+||++||++||+|+|||||++|+|+|+++++|||.++|+|||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCcc
Q 010044 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (519)
Q Consensus 209 GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~ 288 (519)
||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 289 af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
||+||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+||||||++|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 449 t~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|++|||||||||+||+|+|||||||||+||+|+||+++|||+||+|||||||||+++++|++|||+||+||
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aA 509 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAA 509 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.6e-193 Score=1533.39 Aligned_cols=470 Identities=51% Similarity=0.892 Sum_probs=462.1
Q ss_pred ccccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHHh
Q 010044 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (519)
Q Consensus 47 ~~~~~G~~ll~~p~~NkG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~l 126 (519)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccc
Q 010044 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (519)
Q Consensus 127 l~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (519)
+++|+||+||||||||||+|||+||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC
Q 010044 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (519)
Q Consensus 207 ~iGKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~ 286 (519)
||||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 010044 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (519)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~ 366 (519)
+|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+++|++ .|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 499999999
Q ss_pred CcEEEEecCCccccCCccCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 010044 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (519)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~---------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (519)
+|||+||++|||+++|.+ |+++|++||++.++. .+|+|||+++|||||||+|+++|+||||||++|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999975 999999999975443 6999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhh
Q 010044 438 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 517 (519)
Q Consensus 438 erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~ 517 (519)
||||||||||||++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 010044 518 AA 519 (519)
Q Consensus 518 aA 519 (519)
||
T Consensus 489 aA 490 (563)
T PRK13529 489 AA 490 (563)
T ss_pred HH
Confidence 86
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.5e-192 Score=1530.24 Aligned_cols=472 Identities=51% Similarity=0.861 Sum_probs=463.5
Q ss_pred cccccccccccccCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHH
Q 010044 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (519)
Q Consensus 46 ~~~~~~G~~ll~~p~~NkG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (519)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCccc
Q 010044 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (519)
Q Consensus 126 ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 205 (519)
++++|+||+||||||||||+||++||++||+|+|||+|++|||+|+++|+|||.++|++||||||||||||||+|++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 010044 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (519)
Q Consensus 206 I~iGKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~ 285 (519)
||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+||++|+||||++|+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhh
Q 010044 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (519)
Q Consensus 286 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA 365 (519)
++|||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ .|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCcEEEEecCCccccCCccCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCc
Q 010044 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 440 (519)
Q Consensus 366 ~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~--~~---~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (519)
++|||+||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+||||||++|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999964 33 57999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 441 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 441 IIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|||||||||++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||+||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aA 489 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAA 489 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.8e-110 Score=869.01 Aligned_cols=355 Identities=38% Similarity=0.575 Sum_probs=325.8
Q ss_pred cccHHHHHHHHHHHHhcCCC-chhHHHHhhhhhhhhhhhhHHhhhhcccccCCcccccchHHHHHHHhhhhcCCCccccc
Q 010044 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (519)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis 163 (519)
|+|+| |.+|++.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999877 99999999 899999999999999999999999999999999998887775
Q ss_pred ccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCC-CCccccchhhhhhHhhhcCCCCCceeeEEeecCCCccccccC
Q 010044 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (519)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~D 242 (519)
.++.++++||||||||||||||||| ..||||||||++|||+||||| +||||||+||+||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3667778999999999999999999 468999999999999999999 9999999999876
Q ss_pred cccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHH--cCCCceeecCCcchhHHHHHHHHH
Q 010044 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY--GTTHLVFNDDIQGTASVVLAGVVA 320 (519)
Q Consensus 243 p~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af~iL~ry--r~~~~~FnDDiQGTaaV~LAgll~ 320 (519)
+++||++++++||. |++||++.|+||.+++++ +.+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999998 999999999999987755 569999999999999999999999
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCcc-CCchhchhhcc-ccC
Q 010044 321 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 398 (519)
Q Consensus 321 Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~-~l~~~k~~fa~-~~~ 398 (519)
|+|++|++|+|+||||+|||+||+|||++|..+|++ .+|||+|||+|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987543 3899999999999999976 36778878875 444
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCcc
Q 010044 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPF 478 (519)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv 478 (519)
...+ .+++. +||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+||||
T Consensus 260 ~~~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----- 325 (432)
T COG0281 260 ERTL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----- 325 (432)
T ss_pred cccc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC-----
Confidence 4443 44555 59999999998 899999999999 569999999999 9999999999999999999996
Q ss_pred ccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 479 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 479 ~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
+++|||+||+|+|||||+|+|++||++|||+|++||
T Consensus 326 -----sd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AA 361 (432)
T COG0281 326 -----SDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAA 361 (432)
T ss_pred -----CCCcccccceeEcchhhhhhHhhccccCCHHHHHHH
Confidence 677779999999999999999999999999999986
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=8.8e-104 Score=873.39 Aligned_cols=312 Identities=30% Similarity=0.509 Sum_probs=290.4
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-cccchhh
Q 010044 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (519)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (519)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 355999999999999999 899999986 3566667899999999999999999997 9999999
Q ss_pred hhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHH
Q 010044 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 290 (519)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af 290 (519)
++|||+||||| ++| +|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~~d----i~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---VFD----IEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---ccc----cccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 555 55555 687 7888 999999999987 999999999999
Q ss_pred HHHHHHcC--CCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 291 ~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 799999999999999999999999999999999999999999999999999976 488753 9
Q ss_pred EEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
||+||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 449 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 449 t~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
| |||+||||++ |+|++||||| |+++|||+||+|+|||||||++++||++|||+|++||
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aA 348 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAA 348 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHH
Confidence 9 8999999987 9999999997 7999999999999999999999999999999999986
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=7.2e-103 Score=869.74 Aligned_cols=311 Identities=29% Similarity=0.469 Sum_probs=290.3
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCc-cccchhh
Q 010044 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (519)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (519)
.+.|.++|||||+++|++ |+++|+++| .|+.+.|.|+|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 355999999999999999 789999888 3677788999999999999999999996 9999999
Q ss_pred hhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCCCccH
Q 010044 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (519)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIqfEDf~~~~a 289 (519)
++|||+||||| ++|||+| |+ || ||||++|+.+| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 6666555 54 65 78888888888 66 7899999999999
Q ss_pred HHHHHHHcCC--CceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 010044 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (519)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~ 367 (519)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 38873 7
Q ss_pred cEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010044 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (519)
||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999998 8999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 448 Pt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|| |||+|||||+||+| +||||| |+++|||+||+|+|||||||++++||++|||+|++||
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aa 352 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAA 352 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHH
Confidence 99 99999999999998 999998 7999999999999999999999999999999999986
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=7.8e-102 Score=858.16 Aligned_cols=311 Identities=32% Similarity=0.521 Sum_probs=289.5
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCC-ccccchhh
Q 010044 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (519)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 210 (519)
.+.|+++|||||+++|++ |+++|+++| ++++|| +.|+|||||||||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 356999999999999997 799999999 555555 679999999999999999999 79999999
Q ss_pred hhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCCCccH
Q 010044 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (519)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIqfEDf~~~~a 289 (519)
++|||+||||| ++|||+| |+ | +||||++|+..| |. .+||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 6666655 43 4 799999999999 55 5999999999999
Q ss_pred HHHHHHHcCC--CceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 010044 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (519)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~ 367 (519)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999974 89999999999999999999999999999999999999999999999999986 3887 68
Q ss_pred cEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010044 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (519)
|||+||++|||+++|.++|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 445799999998 999999999 8999999999998 7999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 448 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 448 Pt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|| |||+|||||+||+| +||||| |+++|||+||+|+|||||+|++++||++|||+|++||
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aa 344 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAA 344 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHH
Confidence 99 89999999999999 999998 7999999999999999999999999999999999986
No 9
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=7.3e-85 Score=646.57 Aligned_cols=211 Identities=55% Similarity=0.926 Sum_probs=189.9
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC
Q 010044 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (519)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (519)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 899999999999999999999999999999999999999999999999986 9999999999999999999999995 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010044 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (519)
Q Consensus 387 ~~~k~~fa~~~~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt 463 (519)
+++|++||++..+. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 464 ~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
+|+|||||||||+||+|+||+|+||||||+|||||||||++++||++|||+||++|
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 214 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAA 214 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHH
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 10
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.3e-82 Score=637.47 Aligned_cols=211 Identities=62% Similarity=1.020 Sum_probs=205.9
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC
Q 010044 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (519)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (519)
|||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999988 599999999999999999999999975 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC
Q 010044 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 464 (519)
Q Consensus 387 ~~~k~~fa~~~~--~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~ 464 (519)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 465 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 465 G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|+|||||||||+||+|+||+|+||||||+|+|||||||+++++|++|||+|+++|
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aA 213 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAA 213 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.5e-82 Score=629.58 Aligned_cols=211 Identities=52% Similarity=0.784 Sum_probs=205.8
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC
Q 010044 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (519)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (519)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 499999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010044 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (519)
Q Consensus 387 ~~~k~~---fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt 463 (519)
+++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||+|||++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 464 ~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
+|||||||||||+||+|+||+|.|+|+||+|+|||||||+++++|++|||+||++|
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aA 214 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSA 214 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2e-83 Score=608.09 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.2
Q ss_pred hhhhhhhhHHhhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecCceeec
Q 010044 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (519)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (519)
|++||+|||+++.+|+||+||||||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchhhhhhHhhhcCCCCCceeeEEeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCC
Q 010044 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (519)
Q Consensus 196 LGDlG~~GmgI~iGKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp 275 (519)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+||+.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCccHHHHHHHHc
Q 010044 276 KVLIQFEDFANHNAFELLAKYG 297 (519)
Q Consensus 276 ~~lIqfEDf~~~~af~iL~ryr 297 (519)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=8e-49 Score=382.23 Aligned_cols=184 Identities=40% Similarity=0.550 Sum_probs=169.6
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC
Q 010044 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (519)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (519)
|||||+|++||+++|++..|++++|+||||+|||+||.+||++|... |++ +++||++|++|+++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~-----G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAA-----GAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHc-----CcC----cceEEEEeCCCccccccchhh
Confidence 79999999999999999999999999999999999999999999753 876 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 010044 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (519)
Q Consensus 387 ~~~k~~fa~~~--~~~-~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt 463 (519)
.++|++|+++. ... .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 378899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEEcCCCCCccccCCEEecccCccceeechhhhHHHHHhCCcccChhhhhcC
Q 010044 464 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 519 (519)
Q Consensus 464 ~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aA 519 (519)
|..||+|| +++.|+|+||+|||||||||+++++|++|||+||++|
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~a 187 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAA 187 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHH
Confidence 55599998 6999999999999999999999999999999999986
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.90 E-value=1.8e-08 Score=84.37 Aligned_cols=86 Identities=36% Similarity=0.483 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999764 2 257999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
|+||++++.++.|+++. |+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~~---~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEEA---TAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHHH---HHhcCCCCEEEecC
Confidence 99999999999898884 44446899999885
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.89 E-value=0.00036 Score=75.27 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=105.9
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHH---------------------HHHHc-------CCCcee
Q 010044 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (519)
Q Consensus 252 R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af~i---------------------L~ryr-------~~~~~F 303 (519)
..+-+||.+.+++.+ ..+.|+.+| |.+..-...+ ..||+ -.+|||
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 345678888777765 334565555 4444333322 23453 269999
Q ss_pred e----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEe
Q 010044 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (519)
Q Consensus 304 n----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (519)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 7778898777666653 346678999999999999999999988653 52 588888
Q ss_pred cCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 374 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 374 s~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
.+- .|. +...+ ..-...++.++++. +|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~dp----~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----ICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 641 121 11111 11112468888885 99999988877789999999986 445666555544
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.46 E-value=0.00052 Score=73.40 Aligned_cols=121 Identities=25% Similarity=0.372 Sum_probs=82.9
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
.+..+|+.+++-.|.+..| ++.+.+++|+|+|..|..+++.+... |. .+++++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 48899999999999999999988652 53 5788888741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCC
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 449 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 449 (519)
...+.+....-+..++.+++.. .|++|-+++.+ .++++++++.+.....+| +|+-+++|-
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112467788876 99999987544 478999999875433356 889999995
No 17
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.43 E-value=0.0018 Score=63.95 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-|+.. + ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 678899999998887 4 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 010044 390 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (519)
Q Consensus 390 -k~~fa~~~~~~~~-------L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~ 460 (519)
...+.+....... =.+.+-.++.||||=++. .+.+|++..+.+. -++|..-+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l~----a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKLK----AKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhcC----ccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221110100 013344568999997776 5699999999984 789998888 874 2 456666
Q ss_pred cccCC
Q 010044 461 TWSKG 465 (519)
Q Consensus 461 ~wt~G 465 (519)
+ ..|
T Consensus 140 ~-~~G 143 (217)
T cd05211 140 H-ERG 143 (217)
T ss_pred H-HCC
Confidence 5 356
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.43 E-value=0.0073 Score=65.11 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=127.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccH--HHHHHHHcC----CCcee----------ecCCcchhHHHHH
Q 010044 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT----THLVF----------NDDIQGTASVVLA 316 (519)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~a--f~iL~ryr~----~~~~F----------nDDiQGTaaV~LA 316 (519)
.+..|-..+...|+.++.+.-||..=|-=+|++..-. --+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4567788899999999999999865556667765321 123567653 11111 2333458888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEecCCccccCCccCCchhch-hhc
Q 010044 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (519)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~-lvDs~GLi~~~R~~~l~~~k~-~fa 394 (519)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|+.... |+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 8888999999999999999999999999999998653 53 566 9999999998753 443221 111
Q ss_pred cccC------C--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010044 395 HEHE------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (519)
Q Consensus 395 ~~~~------~--~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (519)
+... . .-+-.+.+. .+.||||=+.. ++.+|++.+..+ +-.||.--+| |+ .+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 1100 0 012233333 48999996664 679999999987 5889999999 65 344 445554
No 19
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.38 E-value=0.008 Score=65.47 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=129.8
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccH--HHHHHHHcCC---C-------cee----ecCCcchhHHHHH
Q 010044 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGTT---H-------LVF----NDDIQGTASVVLA 316 (519)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~a--f~iL~ryr~~---~-------~~F----nDDiQGTaaV~LA 316 (519)
.+..|-..|...|+.++.+.+||..=|-=+|++..-. --+.++|+.- . |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 4556888899999999999999988777888774221 1246777631 1 211 1234467777788
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEE-EecCCccccCCccCCchh-----c
Q 010044 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL-VDSKGLIVSSRKDSLQHF-----K 390 (519)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~l-vDs~GLi~~~R~~~l~~~-----k 390 (519)
++..+++..+.+|++.||+|.|-|..|...|++|.+ .|. +++- .|++|-|+...+ |+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 888889999999999999999999999999999964 253 4554 499999998753 4332 2
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010044 391 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (519)
Q Consensus 391 ~-------~fa~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (519)
. .|... ....-+- +.+-.++.||||=+.. .+.+|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001122 2234567999997765 77999999999843 35679999998 76 244 445554
No 20
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.29 E-value=0.0015 Score=67.16 Aligned_cols=136 Identities=23% Similarity=0.356 Sum_probs=86.8
Q ss_pred ccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 010044 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (519)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~ 366 (519)
.+||++=++.|.+.-+. .+-.+|+.+++-.|.+..|. +.+.+|+|+|+|..|..+++.+... | .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------C
Confidence 46666666666654444 34456666666666665555 8999999999999999999888652 4 2
Q ss_pred CcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 010044 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 444 (519)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 444 (519)
++|+++|+. .+| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 222 111122221111112357788876 8999999887654 67666654322 2347788
Q ss_pred cCCCC
Q 010044 445 LSNPT 449 (519)
Q Consensus 445 LSNPt 449 (519)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 21
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.27 E-value=0.0044 Score=66.69 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=89.2
Q ss_pred CCceee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 789987 777999977766655 5567789999999999999999999988642 52 5
Q ss_pred EEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
++++|.+- .|. +...+ ..-...++.|+++. .|++|-+++..++++.+.++.|. +.-||.-.+-.
T Consensus 221 ViV~d~dp----~r~--~~A~~-----~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~~ 284 (406)
T TIGR00936 221 VIVTEVDP----IRA--LEAAM-----DGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGHF 284 (406)
T ss_pred EEEEeCCh----hhH--HHHHh-----cCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECCC
Confidence 88888642 111 11111 11112357888875 89999888877888888888886 55677766666
Q ss_pred CCCCCCCHHHH
Q 010044 449 TSQSECTAEEA 459 (519)
Q Consensus 449 t~~~E~tpe~A 459 (519)
. .|+.-++.
T Consensus 285 ~--~eId~~aL 293 (406)
T TIGR00936 285 D--VEIDVKAL 293 (406)
T ss_pred C--ceeCHHHH
Confidence 4 55554443
No 22
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.22 E-value=0.02 Score=62.41 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=130.3
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHH---HHHHHcC----CCceeec---CC-------cchhHHHH
Q 010044 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 315 (519)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af~---iL~ryr~----~~~~FnD---Di-------QGTaaV~L 315 (519)
.+..|-..+.-.||..+.+..||+.=|-=.|++. ++.+ +++.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556788899999999998889988777777774 3322 4566653 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchh---
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP--- 392 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~--- 392 (519)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999663 63 5577889999999865 35543311
Q ss_pred ------------hccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 010044 393 ------------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (519)
Q Consensus 393 ------------fa~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe 457 (519)
++...+.. -+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 11110010 01122 22457999997665 57999999999953 34679999998 543 33 44
Q ss_pred HHhc
Q 010044 458 EAYT 461 (519)
Q Consensus 458 ~A~~ 461 (519)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 23
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.21 E-value=0.0099 Score=64.77 Aligned_cols=181 Identities=16% Similarity=0.112 Sum_probs=125.4
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCcc--HHHHHHHHcC---C-Ccee----------ecCCcchhHHHHH
Q 010044 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---T-HLVF----------NDDIQGTASVVLA 316 (519)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~--af~iL~ryr~---~-~~~F----------nDDiQGTaaV~LA 316 (519)
.+-.|...+.-.||..+.+.+||+.-|-=+|++..- ---+.+.|+. . .-+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 456778889999999999999998888888887632 2235667753 1 1233 2334568888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc
Q 010044 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (519)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~ 396 (519)
++-.+++..|.+|+++||+|.|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..|-..
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999999764 63 3455699999998764 465544332111
Q ss_pred -----cCCC-----------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 010044 397 -----HEPV-----------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (519)
Q Consensus 397 -----~~~~-----------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (519)
...+ -+-.+ +-.++.||||=+.. .+.+|++.++.+... -.-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCCCCC
Confidence 0000 01112 21246899996665 679999999999521 0137887888 54
No 24
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.20 E-value=0.0014 Score=70.13 Aligned_cols=120 Identities=27% Similarity=0.415 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
+..+|+.+|+--|.+..| ++.+.+++|+|||..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666554544444 6889999999999999999988864 253 679988874 122 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEEcCCCC
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 449 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 449 (519)
..+.|.....+..++.+++.. +|++|-+++.+ .++++++++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 112221111112456777775 89999988655 478999999975321 345888999996
No 25
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.18 E-value=0.0063 Score=65.67 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=94.6
Q ss_pred CCceee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
.+|+|+ |...||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+... |. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------E
Confidence 788885 777999998887776 5667789999999999999999999988643 52 5
Q ss_pred EEEEecCCccccCCccCCchhchhhcccc-CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010044 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (519)
++++|.+ ..| ..+|+.. -...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~~R--------~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PIC--------ALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hhh--------HHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7778763 222 2233221 111246788875 89999999888889999898886 5667766777
Q ss_pred CCCCCCCCHHHHhc
Q 010044 448 PTSQSECTAEEAYT 461 (519)
Q Consensus 448 Pt~~~E~tpe~A~~ 461 (519)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7888887654
No 26
>PLN02494 adenosylhomocysteinase
Probab=97.09 E-value=0.0065 Score=66.64 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=94.6
Q ss_pred CCceee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678776 557899888888877 567788999999999999999999999853 253 5
Q ss_pred EEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 369 i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
++++|.+.. |. +.....-| ...++.|+++. +|++|=+++..++++++.++.|. +..++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 888876421 10 11111111 11368888876 99999877777788999999997 67788888886
Q ss_pred CCCCCCCHHHHhcc
Q 010044 449 TSQSECTAEEAYTW 462 (519)
Q Consensus 449 t~~~E~tpe~A~~w 462 (519)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 5 77777655543
No 27
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.08 E-value=0.0043 Score=59.12 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc
Q 010044 317 GVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (519)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~ 395 (519)
+.+-.++-...+|++.+++|+|+|. .|..+|+.|... | .++++++++
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~-----g-------~~V~v~~r~-------------------- 77 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNR-----N-------ATVTVCHSK-------------------- 77 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhC-----C-------CEEEEEECC--------------------
Confidence 3344455556789999999999997 599999988652 4 258888864
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 396 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
..+|.+.++. +|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 ----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 1357888887 99999999988899999764 357899999986
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.07 E-value=0.0052 Score=62.86 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=93.8
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC
Q 010044 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (519)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (519)
+..+.+++=.++.-+++..+..|.+.+++|+|+|.+|.++|+.+... |. +++++|++. . .+
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DL 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HH
Confidence 34555666667778888888899999999999999999999999653 52 588888741 1 11
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCc
Q 010044 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR 466 (519)
Q Consensus 387 ~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~ 466 (519)
...+ .+....-...+|.+.+++ .|++|=+. +.+.++++.++.|. +..+|+=+|..- -++.++.|.+. .-+
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~~-G~~ 257 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKKR-GIK 257 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHHC-CCE
Confidence 1111 000011122467788875 99999755 34588999998886 567888776522 46667666553 447
Q ss_pred EEEEcCCC
Q 010044 467 AIFASGSP 474 (519)
Q Consensus 467 aifAsGSP 474 (519)
++.+-|-|
T Consensus 258 a~~~~glP 265 (287)
T TIGR02853 258 ALLAPGLP 265 (287)
T ss_pred EEEeCCCC
Confidence 78888865
No 29
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.05 E-value=0.0047 Score=65.11 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
|+++..+++--|.+..|..|++.+++|.|| |+.|..++++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888889999999999999999999 89999999999752 232 578888864 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-C-CCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-R-TFTKEVIEAMASFNEKPLILALSNPTS 450 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~-g-~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (519)
.+.++.. ....+|.+++.. +|+++-+++.+ . .++++.++ +.-+|+=+|.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCCC
Confidence 3333321 223468888886 99999887764 3 26777662 3345566899963
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.05 E-value=0.00051 Score=62.28 Aligned_cols=102 Identities=25% Similarity=0.430 Sum_probs=68.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L 403 (519)
.++++.|++|+|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 378999999999999999999888763 54 789999973 222 22333333110 1123567
Q ss_pred HHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010044 404 LDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTS 450 (519)
Q Consensus 404 ~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (519)
.+.++. .|++|-+++.+ -.++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 777776 99999998766 37899888754311 249999999963
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.88 E-value=0.0084 Score=61.51 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch
Q 010044 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (519)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~ 391 (519)
+++-+++..|++..+.++...|++|+|+|.+|..++..+... | -+++++|++- . +.
T Consensus 133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~----~--------~~ 188 (296)
T PRK08306 133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS----A--------HL 188 (296)
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH----H--------HH
Confidence 333445667778888899999999999999999999988642 5 2688888851 1 11
Q ss_pred hhccc----cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-c
Q 010044 392 PWAHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-R 466 (519)
Q Consensus 392 ~fa~~----~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G-~ 466 (519)
.+++. .-...+|.+.++. .|++|-++. ...+++++++.|. +..+|+=++... -.|..+.|.+ .| +
T Consensus 189 ~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~ 258 (296)
T PRK08306 189 ARITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIK 258 (296)
T ss_pred HHHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeE
Confidence 11111 0112467788885 999998754 4578999999997 567777665433 3455554433 34 4
Q ss_pred EEEEcCCC
Q 010044 467 AIFASGSP 474 (519)
Q Consensus 467 aifAsGSP 474 (519)
++.++|-|
T Consensus 259 ~~~~~~lp 266 (296)
T PRK08306 259 ALLAPGLP 266 (296)
T ss_pred EEEECCCC
Confidence 55567755
No 32
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.88 E-value=0.0036 Score=67.53 Aligned_cols=135 Identities=24% Similarity=0.379 Sum_probs=89.7
Q ss_pred ccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 010044 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (519)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~ 366 (519)
..||..=+|.|.+-- + =.|-.+|.-|++=-|-++.|. |++.+++|+|||..|-.+|+.|... |+
T Consensus 139 qkAi~~gKrvRseT~-I---~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETG-I---GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccC-C---CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 456666667765210 0 124445555666666666555 9999999999999999999998763 64
Q ss_pred CcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcE
Q 010044 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPL 441 (519)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPI 441 (519)
++|+++.+ |..|. +.+|+. .-....|.+.+.. .||+|-.++. .-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 78988877 33332 223332 1223567778877 9998866544 45899999988654333349
Q ss_pred EEEcCCCCC
Q 010044 442 ILALSNPTS 450 (519)
Q Consensus 442 IFaLSNPt~ 450 (519)
||=++||-.
T Consensus 270 ivDiavPRd 278 (414)
T COG0373 270 IVDIAVPRD 278 (414)
T ss_pred EEEecCCCC
Confidence 999999973
No 33
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.87 E-value=0.085 Score=57.81 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=130.2
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHH---HHHHHcC---CC-ceee----------cCCcchhHHHH
Q 010044 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFN----------DDIQGTASVVL 315 (519)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af~---iL~ryr~---~~-~~Fn----------DDiQGTaaV~L 315 (519)
.+..|-..|...||..+.+..||..-|-=.|++. +..+ +.+.|+. .. .|+- +--..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678899999999999999999999999884 3333 3555542 11 2221 11224887788
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEecCCccccCCccCCchhch---
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~-lvDs~GLi~~~R~~~l~~~k~--- 391 (519)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999999763 63 455 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCH
Q 010044 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTA 456 (519)
Q Consensus 392 ------------~fa~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tp 456 (519)
.|+......+ +-.+ +-.++.|||+=+.. .+.+|++-++.+-+ +.-.+|.=-+| |++ +| +
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A 361 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--A 361 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--H
Confidence 1211000000 1111 22367999998776 56999999998843 34668888888 764 23 4
Q ss_pred HHHhc
Q 010044 457 EEAYT 461 (519)
Q Consensus 457 e~A~~ 461 (519)
++.++
T Consensus 362 ~~~L~ 366 (454)
T PTZ00079 362 THLFK 366 (454)
T ss_pred HHHHH
Confidence 45554
No 34
>PLN00203 glutamyl-tRNA reductase
Probab=96.75 E-value=0.005 Score=68.11 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=80.7
Q ss_pred chhHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .+| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445555666666666664 6999999999999999999988764 253 679998874 222 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCC
Q 010044 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPT 449 (519)
Q Consensus 388 ~~k~~fa~---~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIFaLSNPt 449 (519)
.....|-. ...+..++.+++.. +|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 11223567888876 99999886544 489999999984321 244 566799996
No 35
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.66 E-value=0.017 Score=57.35 Aligned_cols=132 Identities=25% Similarity=0.314 Sum_probs=93.4
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
.-||-=+..++-.+++..+.+|.+.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577777888888889889999999999999999999999998763 53 34559999999998763 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 010044 388 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (519)
Q Consensus 388 ~~k~-~fa~~~~~------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe 457 (519)
.... .+.+.... . -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |++ +| ++
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~t-~~--a~ 145 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPTT-PE--AD 145 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCCC-HH--HH
Confidence 2221 11111000 0 12233 3345899999887 4779999999998 4889999999 553 33 44
Q ss_pred HHhc
Q 010044 458 EAYT 461 (519)
Q Consensus 458 ~A~~ 461 (519)
+.++
T Consensus 146 ~~L~ 149 (227)
T cd01076 146 EILH 149 (227)
T ss_pred HHHH
Confidence 5554
No 36
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.61 E-value=0.039 Score=56.14 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=92.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~-lvDs~GLi~~~R~~~l~ 387 (519)
.||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466666777888888889999999999999999999999999763 53 455 999999999875 354
Q ss_pred hhch---------------hhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 010044 388 HFKK---------------PWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (519)
Q Consensus 388 ~~k~---------------~fa~~~~--~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (519)
..+. .|....+ ..-+-.|.. ..+.||||=+.. .+.+|++-+..+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 1110000 001222322 457999997755 67999999999843 35789999999 77
Q ss_pred CCCCCCHHHHhc
Q 010044 450 SQSECTAEEAYT 461 (519)
Q Consensus 450 ~~~E~tpe~A~~ 461 (519)
+ + .+++.+.
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 2445554
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.47 E-value=0.032 Score=54.18 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC
Q 010044 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~--g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l 386 (519)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999998763 5 3688888651 123
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCC
Q 010044 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKG 465 (519)
Q Consensus 387 ~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~wt~G 465 (519)
..++..|.. .. -+..+... .+.|+++=++. ++++|++.++.|. -++|..-+| |++. ..+++.++ ..|
T Consensus 65 ~~~~~~~g~--~~-v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~~--~~~~~~L~-~~G 132 (200)
T cd01075 65 ARAAELFGA--TV-VAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLAD--PRHGQMLH-ERG 132 (200)
T ss_pred HHHHHHcCC--EE-Ecchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccCC--HhHHHHHH-HCC
Confidence 333333311 11 12233333 36999995555 6799999999994 679999988 6632 34555555 245
Q ss_pred cE
Q 010044 466 RA 467 (519)
Q Consensus 466 ~a 467 (519)
-.
T Consensus 133 i~ 134 (200)
T cd01075 133 IL 134 (200)
T ss_pred CE
Confidence 33
No 38
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.47 E-value=0.059 Score=59.32 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=85.4
Q ss_pred CCceeecCCcchhHHH-------HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEE
Q 010044 299 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (519)
Q Consensus 299 ~~~~FnDDiQGTaaV~-------LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~l 371 (519)
.+||+|=+---|-++. ++.+-+.+|.++..|.+.+++|+|.|..|.++|+.+... |+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 6999986654444432 344455577788999999999999999999999998642 53 5777
Q ss_pred EecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 372 vDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
+|++-. +. +.... ..-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 776411 10 11111 11112468898886 99999988878899999999997 556666666553
No 39
>PLN00106 malate dehydrogenase
Probab=96.41 E-value=0.019 Score=59.96 Aligned_cols=142 Identities=23% Similarity=0.290 Sum_probs=93.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa 394 (519)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 344678888877655 59999999 9999999998864 244 35899999865 1111112332221 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHH
Q 010044 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAE 457 (519)
Q Consensus 395 ~~~--~~~~~L~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~E~tpe 457 (519)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 123567899998 9998877665421 34578888899999999999999982 2235555
Q ss_pred HHhcccC--CcEEEEcCC
Q 010044 458 EAYTWSK--GRAIFASGS 473 (519)
Q Consensus 458 ~A~~wt~--G~aifAsGS 473 (519)
.+++++. -.-+|++|.
T Consensus 148 ~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred HHHHcCCCCcceEEEEec
Confidence 5555542 145777764
No 40
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.36 E-value=0.011 Score=63.58 Aligned_cols=111 Identities=19% Similarity=0.344 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch
Q 010044 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (519)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~ 391 (519)
+|+-+|+=-|-+.. .++++.|++|+|||.+|-.+|..|.. .|. ++|+++++. .+|...| ..
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~L---a~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKI---TS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHH---HH
Confidence 44444444444433 35889999999999999999988864 354 689998884 2222112 22
Q ss_pred hhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEEcCCCC
Q 010044 392 PWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILALSNPT 449 (519)
Q Consensus 392 ~fa-~~~~~~~~L~eav~~vkptvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IFaLSNPt 449 (519)
.|. ....+..+|.+++.. .|++|-+++.+. ++|.+.++ .+|+ |+=||.|-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 221 111223567788876 999999887664 67877652 4665 46799995
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.28 E-value=0.024 Score=58.64 Aligned_cols=96 Identities=17% Similarity=0.334 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+=.-+|-+|++..++-.+.+|++.+++++|+|. .|..+|.+|... | ..+++|+++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc-----------
Confidence 345678889999999999999999999999988 999999999652 4 3677887641
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 258888887 99999999999999999874 45677777664
No 42
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.23 E-value=0.071 Score=51.07 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+=+ .-++
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~DPi------~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEIDPI------RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSHH------HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECChH------HHHH
Confidence 477777777776 5688999999999999999999999999653 5 36777766310 0121
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (519)
.+- +.-+..++.|+++. +|++|-+++...+++.|.++.|. +.-|+.-..-= .-|+.-+...+
T Consensus 62 A~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~--d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHF--DVEIDVDALEA 123 (162)
T ss_dssp HHH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSS--TTSBTHHHHHT
T ss_pred hhh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcC--ceeEeeccccc
Confidence 111 11123579999986 99999999988899999999996 56666545432 37887766544
No 43
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.029 Score=57.63 Aligned_cols=109 Identities=19% Similarity=0.300 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
..+-.|-.|++..++..+.+++.+++|++|+|- +|..+|.+|... | | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC------------
Confidence 346667799999999999999999999999997 999999999652 4 2 68888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC---CCCCCCHHHHhc
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 461 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt---~~~E~tpe~A~~ 461 (519)
..+|.+.+++ +|++|-+++.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246777775 99999999999999998874 45677655 3773 112666666654
No 44
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.98 E-value=0.023 Score=51.13 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~ 395 (519)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. | ..+++++|++ .++ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58999999988889999999999999999988888642 3 1578888874 111 2222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 010044 396 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 449 (519)
Q Consensus 396 ~--~~~~~~L~eav~~vkptvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 449 (519)
. .....++.++++. +|++|-+...+- .|.+. .+ .+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~---~~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPS---LL---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHH---Hc---CCCCEEEEcCcCCC
Confidence 1 0123467777765 999998775442 12222 12 3667888775 454
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.97 E-value=0.038 Score=52.38 Aligned_cols=114 Identities=23% Similarity=0.262 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
||+.+++.+..+++..|..+++.+++++|+ |..|..+++.+.+. | .++++++++ .++ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~----~~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD----LER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC----HHH---HHH
Confidence 677777788888887889999999999997 99999999888652 3 378888764 111 211
Q ss_pred hchhhcc---------ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCC--cEEEEcCCCC
Q 010044 389 FKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK--PLILALSNPT 449 (519)
Q Consensus 389 ~k~~fa~---------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er--PIIFaLSNPt 449 (519)
....+.. +.....++.+++++ .|++|-++..+ ..+....+. ..+ .+++=++.|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~~~----~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKLAW----APKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhhhc----ccCceeEEEEccCCC
Confidence 1111110 01112345677775 89999877654 443222211 123 3666666654
No 46
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.86 E-value=0.027 Score=57.54 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch-hchhhc
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 394 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~-~k~~fa 394 (519)
.|++.+++..+..++.++++|+|||.||.+++..|... |+ ++|+++|+. ..|.+.+.. .+..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 56778887666678889999999999999999998753 64 679999984 233222221 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 010044 395 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (519)
Q Consensus 395 ~-~~~~~~~L~eav~~vkptvLIG~S~~~ 422 (519)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 1 01112455666665 99999987654
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.81 E-value=0.031 Score=59.14 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=64.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~ 404 (519)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..| +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999998653 52 58889874 111 22222222211 11123588
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010044 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 405 eav~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (519)
++++. .|++|.+... +.++|+++++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 9999987532 4468999999996 6788888874
No 48
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.70 E-value=0.019 Score=57.27 Aligned_cols=130 Identities=22% Similarity=0.345 Sum_probs=84.5
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--cCCCCCHHHHhccc
Q 010044 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (519)
Q Consensus 334 iv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--~~~~~~L~eav~~v 410 (519)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....++.+...++ .. -....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99999999988753 41 113689999986411111111133322222 11 1113578899987
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcCCC
Q 010044 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 474 (519)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt--~G~aifAsGSP 474 (519)
+|++|=+.+.++. +-+++.++|.++++..+++-.|||. ..+..-+++++ ...-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~- 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT- 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-
Confidence 9998866554322 3578899999999999999999995 55666667663 3456899986
Q ss_pred CCcc
Q 010044 475 FDPF 478 (519)
Q Consensus 475 f~pv 478 (519)
.++.
T Consensus 146 ld~~ 149 (263)
T cd00650 146 LDPI 149 (263)
T ss_pred chHH
Confidence 5543
No 49
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.56 E-value=0.055 Score=57.21 Aligned_cols=91 Identities=11% Similarity=0.231 Sum_probs=60.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHH-H
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-D 405 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~-e 405 (519)
.+|++.+++++|||..|--+|+.|... |. ++|+++.+.-. + .+|.. +. +
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~-----g~------~~i~v~nRt~~----~--------~~~~~-------~~~~ 219 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQ-----GY------SRITFCSRQQL----T--------LPYRT-------VVRE 219 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHc-----CC------CEEEEEcCCcc----c--------cchhh-------hhhh
Confidence 569999999999999988888887653 64 68999888641 1 22221 11 1
Q ss_pred Hhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 010044 406 AVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (519)
Q Consensus 406 av~-~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (519)
++. ..+.||+|-. +++.-.++.+.++..- +| ++|=||+|-.-
T Consensus 220 ~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~r-~~iDLAvPRdI 266 (338)
T PRK00676 220 ELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---DR-IVFDFNVPRTF 266 (338)
T ss_pred hhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---Cc-EEEEecCCCCC
Confidence 111 1258999964 3334477888766422 24 99999999853
No 50
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.45 E-value=0.035 Score=56.56 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh
Q 010044 316 AGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (519)
Q Consensus 316 Agll~Alk~~g~--~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f 393 (519)
.|++.+++-.+. .+++.+++++|||.|+-+|+..|.+. |. ++|+++++. .+|.+.|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-----GV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 467778876663 68899999999999999998887653 64 689999873 233222321 11
Q ss_pred cccc--CCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 394 AHEH--EPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 394 a~~~--~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.... ... .++.+++. ++|++|.++..+-.++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHhh
Confidence 1100 011 12334444 489999999877656655543
No 51
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.41 E-value=0.044 Score=56.16 Aligned_cols=125 Identities=14% Similarity=0.250 Sum_probs=78.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-C-CCCCHHHHhccc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E-PVNNLLDAVKVI 410 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~-~~~~L~eav~~v 410 (519)
||.|+|||.+|..+|..++.. |+ ..+|.++|.+-=..++-..+|.+.. .+.... . ...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-----g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-----GI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 899999999999999988652 54 2579999985222111111122111 111100 0 11233 34664
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcCCC
Q 010044 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 474 (519)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifAsGSP 474 (519)
.|++|=+++.+.. +=+++.+.|.+++..-+|+-.|||. .+...-+++++. -+-||++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccch
Confidence 9999988776421 1257788888999999999999997 466666666531 1458888865
No 52
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.18 E-value=0.018 Score=52.98 Aligned_cols=105 Identities=22% Similarity=0.383 Sum_probs=67.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC-CccccCCccCCchhchhhccccCCCCCHHHHhcc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~ 409 (519)
.||.|+|| |..|..+|-+|+.. ++ -++|.|+|.+ ... ++..-+|.+..-+.-++..-..+..++++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~-~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKA-EGEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHH-HHHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccc-eeeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999998763 55 3569999996 211 111111322221111111111356777886
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
+|++|=+.+.+ |- +-+++.+.+++++.+.+++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 99999655543 21 2346777888899999999999996
No 53
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.18 E-value=0.034 Score=46.47 Aligned_cols=94 Identities=13% Similarity=0.256 Sum_probs=63.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEE-ecCCccccCCccCCchhchhhccccCCC-CCHHHHhccc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lv-Ds~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~eav~~v 410 (519)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+.+.+.++.|... -. .+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999998764 54 24677755 552 12233333333211 11 379999996
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
+|++| ++..+ ..-+++++++....+..+|..++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66655 5566788888666788999988886
No 54
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.046 Score=55.21 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=72.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhc-------hhhccc--------
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAHE-------- 396 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k-------~~fa~~-------- 396 (519)
.||.|+|+|..|.+||..++.. | .+++++|.+- + .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999988653 5 3688998641 1 111111 111100
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-CcEE
Q 010044 397 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAI 468 (519)
Q Consensus 397 -------~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~-G~ai 468 (519)
-....++.++++. +|++|=+-...-.+.+++++.+.+..+...|+ .||.+++ .+.++.+..+ ...
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r- 137 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEK- 137 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCccc-
Confidence 0112578888886 88888543222236777888887766655666 3565544 4444444332 222
Q ss_pred EEcCCCCCcccc
Q 010044 469 FASGSPFDPFEY 480 (519)
Q Consensus 469 fAsGSPf~pv~~ 480 (519)
|....||.|+..
T Consensus 138 ~vg~Hf~~p~~~ 149 (287)
T PRK08293 138 FLALHFANEIWK 149 (287)
T ss_pred EEEEcCCCCCCc
Confidence 333578888743
No 55
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.08 E-value=0.062 Score=54.07 Aligned_cols=131 Identities=22% Similarity=0.299 Sum_probs=90.0
Q ss_pred cCCcchhHHHHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc
Q 010044 305 DDIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (519)
Q Consensus 305 DDiQGTaaV~LAgll~Alk~~g~~-l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~ 383 (519)
|--+-||-=+..++-.+++..+.. ++..||+|-|.|..|...|+.|.+. |. +=+-+.|++|.|++..+
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC
Confidence 334567777888888999997766 9999999999999999999999874 52 45667899999997542
Q ss_pred cCCchhchhhccccCCCCCH-----------HH--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC-C
Q 010044 384 DSLQHFKKPWAHEHEPVNNL-----------LD--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-P 448 (519)
Q Consensus 384 ~~l~~~k~~fa~~~~~~~~L-----------~e--av~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-P 448 (519)
-+.+.-.+...+....+..+ .+ .+-.++.||||=+ +.++.+|++.+. .+.. .-+||.--+| |
T Consensus 74 ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p 150 (244)
T PF00208_consen 74 LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGP 150 (244)
T ss_dssp EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSS
T ss_pred chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchh
Confidence 11111111111111101111 11 3445699999988 557899999998 7742 4789999999 5
Q ss_pred C
Q 010044 449 T 449 (519)
Q Consensus 449 t 449 (519)
+
T Consensus 151 ~ 151 (244)
T PF00208_consen 151 L 151 (244)
T ss_dssp B
T ss_pred c
Confidence 5
No 56
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.2 Score=51.92 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++..++-.+.+|+..+++++|-|. .|.-+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4668889999999999999999999999998 99999999864 24 356777764
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC----CCCCCCHHHHhc
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT----SQSECTAEEAYT 461 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt----~~~E~tpe~A~~ 461 (519)
.++|.+.+++ +|++|-..+.++.|+.++|+ +.-+|.=.. |+. -.--+.+|.+.+
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvGin~~~~gk~~GDvd~~~~~~ 251 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVGINRLEDGKLVGDVEFETAAE 251 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcccccccCCCcCCCcCHHHHHh
Confidence 1358898987 99999999999999999986 567887666 432 122355666654
No 57
>PRK05086 malate dehydrogenase; Provisional
Probab=95.02 E-value=0.13 Score=53.31 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=67.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-CCCCCHHHHhcc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKV 409 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~~~~L~eav~~ 409 (519)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....-. ....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887542 122 256889997522 11110012211 0000000 012467788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
.|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888666653 21 5578999999999999999999997
No 58
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.00 E-value=0.047 Score=58.98 Aligned_cols=126 Identities=16% Similarity=0.284 Sum_probs=77.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 405 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~e 405 (519)
.||+|+||||+ -...++-..+.+...++ .+.|||+|-+- ..|-+.+...-+.+++. ..+ ..++.+
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 34444433332223332 47899999852 22211111111222221 111 258999
Q ss_pred HhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 010044 406 AVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTSQ 451 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (519)
|+++ +|.+|-.-.+||. .=.++++.|.++++..+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9988 8888755555541 12378888999999999999999973
Q ss_pred CCCCHHHHhcccCCcEEEEcC
Q 010044 452 SECTAEEAYTWSKGRAIFASG 472 (519)
Q Consensus 452 ~E~tpe~A~~wt~G~aifAsG 472 (519)
+..+-+++++ ..-+|++|
T Consensus 149 --ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 149 --IVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred --HHHHHHHHhc-cCCEEeeC
Confidence 5556667777 44566665
No 59
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.95 E-value=0.18 Score=46.89 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch
Q 010044 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (519)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~ 391 (519)
-.+..|++..++..|.+++.++++++|.+.. +++-+...+.+ .|. .+.+||++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 3577889999999999999999999998654 44444444433 353 566777631
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010044 392 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (519)
Q Consensus 392 ~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (519)
.+|.+++++ +|++|-..+.++.|+.|+|+ +.-+|..-
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vidv 99 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVINC 99 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEEc
Confidence 268889997 99999999999999999997 45566643
No 60
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.84 E-value=0.1 Score=54.42 Aligned_cols=127 Identities=17% Similarity=0.288 Sum_probs=78.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~ea 406 (519)
+-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=....+.-++.+. ..+.... ...+++ ++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HH
Confidence 33699999999999999998764 365 23999997532222111012111 1121111 112456 56
Q ss_pred hcccCCcEEEeccCCCCC-------------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--C
Q 010044 407 VKVIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--G 465 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g~-------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G 465 (519)
+++ +|++|=+.+.++. +-.++++.|.+++..-+++--|||. ......+++++. -
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~ 146 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPK 146 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCCh
Confidence 776 9999865554421 1347888888999887999999996 344555556553 2
Q ss_pred cEEEEcCCC
Q 010044 466 RAIFASGSP 474 (519)
Q Consensus 466 ~aifAsGSP 474 (519)
.-+|++|.-
T Consensus 147 ~rviGlgt~ 155 (321)
T PTZ00082 147 NKVCGMAGV 155 (321)
T ss_pred hhEEEecCc
Confidence 468888843
No 61
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.80 E-value=0.06 Score=55.84 Aligned_cols=128 Identities=14% Similarity=0.267 Sum_probs=80.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-CCCCCHHHHhcc
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKV 409 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~~~~L~eav~~ 409 (519)
..||.|+|||..|..+|-+|+. .|+ ...|.|+|.+--..++-.-+|.+.. +|-+.. -..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998864 365 3679999984211111111132222 221110 011344 45776
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcCC
Q 010044 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 473 (519)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt--~G~aifAsGS 473 (519)
+|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++....+++++ ..+-+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 9999876665321 1146788888899999999999996 55666777765 3344778775
Q ss_pred CC
Q 010044 474 PF 475 (519)
Q Consensus 474 Pf 475 (519)
--
T Consensus 149 ~L 150 (315)
T PRK00066 149 SL 150 (315)
T ss_pred hH
Confidence 43
No 62
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.67 E-value=0.18 Score=56.04 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=94.7
Q ss_pred ccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC---ccHHHHHHHHcCCCceeecCCcchhHHH
Q 010044 238 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN---HNAFELLAKYGTTHLVFNDDIQGTASVV 314 (519)
Q Consensus 238 ~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~---~~af~iL~ryr~~~~~FnDDiQGTaaV~ 314 (519)
.|.++-.++|+-|+-.. . |.++++.++ .=.+|-+|.+-. ...+++| --.-.|-|=-+|.
T Consensus 82 ~l~~g~~li~~l~p~~~----~----~l~~~l~~~--~it~ia~e~vpr~sraq~~d~l--------ssma~IAGy~Av~ 143 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----P----ELLEKLAAR--GVTVLAMDAVPRISRAQSLDAL--------SSMANIAGYRAVI 143 (509)
T ss_pred hcCCCCEEEEEeCcccC----H----HHHHHHHHc--CCEEEEeecccccccCCCcccc--------cchhhhhHHHHHH
Confidence 45566677777776322 2 333333332 234567777642 1222222 2233455544554
Q ss_pred HHHHHHHHHHhC-----CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCcc---CC
Q 010044 315 LAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL 386 (519)
Q Consensus 315 LAgll~Alk~~g-----~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~---~l 386 (519)
.|+-.-.--..| ......||+|+|||.+|++.+...... | | +++.+|..- .|.+ .+
T Consensus 144 ~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~l-----G-----A--~V~a~D~~~----~rle~aesl 207 (509)
T PRK09424 144 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSL-----G-----A--IVRAFDTRP----EVAEQVESM 207 (509)
T ss_pred HHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHC-----C-----C--EEEEEeCCH----HHHHHHHHc
Confidence 443321111111 134589999999999999987776542 5 3 477787641 1110 00
Q ss_pred ------------chhchhhccccCC-C-----CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEE
Q 010044 387 ------------QHFKKPWAHEHEP-V-----NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 387 ------------~~~k~~fa~~~~~-~-----~~L~eav~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIF 443 (519)
......|++...+ . ..+.+.++ ++|++|.+++.+| ++++++++.|. +.-+|.
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIV 282 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIV 282 (509)
T ss_pred CCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEE
Confidence 0011123332111 0 01222233 4999999999866 67999999997 455666
Q ss_pred EcCCCC-CCCCCCH
Q 010044 444 ALSNPT-SQSECTA 456 (519)
Q Consensus 444 aLSNPt-~~~E~tp 456 (519)
=++.+. ...|++.
T Consensus 283 dvg~~~GG~~e~t~ 296 (509)
T PRK09424 283 DLAAENGGNCELTV 296 (509)
T ss_pred EEccCCCCCccccc
Confidence 677653 3345553
No 63
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.61 E-value=0.12 Score=53.51 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.=++-.+-+++..++|++|.| ..|.-+|.++... |. .+.+|+++ +
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC-------c------
Confidence 357788889999999999999999999999 9999999999652 53 35566442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.+|.+.+++ +|++|...+.++.+++++|+ +.-+|.=..
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk------~GavVIDvG 229 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK------KGAVVVDIG 229 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCcEEEEee
Confidence 347788887 99999999999999999995 555665444
No 64
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.55 E-value=0.16 Score=52.69 Aligned_cols=128 Identities=20% Similarity=0.343 Sum_probs=79.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~ea 406 (519)
+..||.|+|||..|.++|.+++.. |+ ..+.|+|.+--...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-----~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-----NL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-----CC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 446999999999999999987652 54 24999997421111110012221 1111111 1124566 6
Q ss_pred hcccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 010044 407 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifA 470 (519)
+++ +|++|=+.+.+. -+-+++.+.|.+++..-+++-.|||. ......++++++ -.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 776 899886665442 23358899999999999888889996 444566666652 145888
Q ss_pred cCCCC
Q 010044 471 SGSPF 475 (519)
Q Consensus 471 sGSPf 475 (519)
+|+-.
T Consensus 146 ~gt~l 150 (319)
T PTZ00117 146 MAGVL 150 (319)
T ss_pred ecchH
Confidence 88543
No 65
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.51 E-value=0.088 Score=57.04 Aligned_cols=125 Identities=17% Similarity=0.253 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~-~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~ 404 (519)
.||+|+||||+ -...|+..+.+ ...++ ...|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 44444444433 22343 4789999964 44422122222223322 112 25899
Q ss_pred HHhcccCCcEEEeccC--------------------------CCCCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 010044 405 DAVKVIKPTILIGSSG--------------------------VGRTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (519)
Q Consensus 405 eav~~vkptvLIG~S~--------------------------~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (519)
+|+++ +|.+|-.-. .||.|. .++++.|.++++..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 887764332 334333 38899999999999999999997
Q ss_pred CCCCCHHHHhcccCCcEEEEcC
Q 010044 451 QSECTAEEAYTWSKGRAIFASG 472 (519)
Q Consensus 451 ~~E~tpe~A~~wt~G~aifAsG 472 (519)
-+.-+-+++++...-+|++|
T Consensus 147 --di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEEC
Confidence 33444555666444566655
No 66
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.39 E-value=0.062 Score=52.12 Aligned_cols=104 Identities=24% Similarity=0.226 Sum_probs=64.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhcc---
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~--- 395 (519)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ ..+.- +++-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQRL 84 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHHHH
Confidence 478999999999999999999999775 65 78999998722 11100 001111111110
Q ss_pred -c----------cCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 396 -E----------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 396 -~----------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
. .... .++.+.++. .|++|.+... .=++.++..++.....|.|++-+
T Consensus 85 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 85 RELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred HHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0111 235555654 7888887642 33556677777777889888764
No 67
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.36 E-value=0.096 Score=53.24 Aligned_cols=120 Identities=21% Similarity=0.360 Sum_probs=74.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc----cc-----CCCCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH-----EPVNN 402 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~----~~-----~~~~~ 402 (519)
.||.|+|||..|.++|..++.. |+ . .++++|.+ .++ +......+.+ .. ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 4899999999999999988652 54 2 79999983 211 1111111111 00 01135
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC---
Q 010044 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 465 (519)
Q Consensus 403 L~eav~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G--- 465 (519)
. ++++. +|++|=+-+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 55776 89988333322 2 12357778888899999888889996 34444555555 4
Q ss_pred cEEEEcCCCCC
Q 010044 466 RAIFASGSPFD 476 (519)
Q Consensus 466 ~aifAsGSPf~ 476 (519)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56999985443
No 68
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.07 E-value=0.74 Score=48.12 Aligned_cols=153 Identities=10% Similarity=0.175 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeecC---CcchhHHHHHHHHHHHHH---------------
Q 010044 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD---IQGTASVVLAGVVAALKL--------------- 324 (519)
Q Consensus 263 defv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~~~~~FnDD---iQGTaaV~LAgll~Alk~--------------- 324 (519)
.|++++..+. |-+ +|+.-=.+-.| .++-.--+..+.+.|-- -+.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 3566555431 111 14433333332 33333334578887742 245566678888876552
Q ss_pred ----hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC
Q 010044 325 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 400 (519)
Q Consensus 325 ----~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~ 400 (519)
.|..|.+++|.|+|.|..|..+|+.+... .|+ ++|..|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 23468899999999999999999999543 243 688888642 1 001 1111 123
Q ss_pred CCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010044 401 NNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (519)
.+|.|+++. .|+++=..- ..++|+++.++.|. +..++.=+|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 589999987 899885421 13577888888886 6778887775
No 69
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.03 E-value=0.33 Score=50.90 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=69.1
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh-ccccCCCCCHHHH
Q 010044 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 406 (519)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f-a~~~~~~~~L~ea 406 (519)
++-.||+|.|| |..|..+|..|+. .++ ...+.|+|.+ .. .+-.-+|.+....+ .+......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34469999999 9999999987753 243 3689999982 21 11111233221110 0011111234788
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 407 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
+++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 987 9988855555322 4568899999999999999999998
No 70
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.84 E-value=0.089 Score=51.26 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=63.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-C-CCCCHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E-PVNNLL 404 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~-~~~~L~ 404 (519)
.+|++.||+|+|+|..|..||..|+.+ |+ +++.++|.+=+ ..+ +|+.+. .+..+. . ....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~Rq~-~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EPS---NLNRQQ-YKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-ccc---cccccc-CChhhCCCHHHHHHH
Confidence 358899999999999999999999875 65 68999999732 222 244321 111111 1 112466
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-EcCCCCCCCCC
Q 010044 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSEC 454 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~~E~ 454 (519)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 66777777754432 223466665555432 223444 55666644443
No 71
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.83 E-value=0.23 Score=55.19 Aligned_cols=175 Identities=15% Similarity=0.226 Sum_probs=92.4
Q ss_pred cccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceee--cCCcchhHHH
Q 010044 237 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVV 314 (519)
Q Consensus 237 e~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~ 314 (519)
+.|.++-.|+++-|+-.. .+ .++++.++ .-.+|-+|.+-. + +|- .+..+|. ..|-|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~----ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PE----LMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HH----HHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 455667777788776432 23 33333332 234577775531 0 111 1223332 3456666665
Q ss_pred HHHHHHHHHHhC-----CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch-
Q 010044 315 LAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH- 388 (519)
Q Consensus 315 LAgll~Alk~~g-----~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~- 388 (519)
.|+=.-.-...| ......|++|+|+|.+|+..+..+... |. +++++|.+.-... +...+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle-~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE-QVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH-HHHHcCCe
Confidence 554333222222 234568999999999999988877552 52 3777777643110 0000100
Q ss_pred -----------hchhhccccCC------CCCHHHHhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 389 -----------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 389 -----------~k~~fa~~~~~------~~~L~eav~~vkptvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
...-||+...+ ..-+.+.++. .|++|++.-.+ -++|+|+++.|.. .-+|.=||
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp---GsvIVDlA 284 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA---GSVIVDLA 284 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC---CCEEEEee
Confidence 00112221100 0125556665 99999998333 3599999999973 34444344
No 72
>PRK08328 hypothetical protein; Provisional
Probab=93.81 E-value=0.035 Score=54.98 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=43.2
Q ss_pred HHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEE
Q 010044 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (519)
Q Consensus 293 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lv 372 (519)
++||..++..|..+.| .+|++.||+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788777766655322 467889999999999999999999875 75 789999
Q ss_pred ecC
Q 010044 373 DSK 375 (519)
Q Consensus 373 Ds~ 375 (519)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 976
No 73
>PRK08223 hypothetical protein; Validated
Probab=93.75 E-value=0.12 Score=53.48 Aligned_cols=127 Identities=14% Similarity=0.053 Sum_probs=80.4
Q ss_pred HHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcE
Q 010044 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (519)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i 369 (519)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677888776666654432 578899999999999999999999876 65 689
Q ss_pred EEEecCCccccCCc-------cCCchhchhhccc-----c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCC
Q 010044 370 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE-----H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFT 426 (519)
Q Consensus 370 ~lvDs~GLi~~~R~-------~~l~~~k~~fa~~-----~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft 426 (519)
.++|.+=+=.++-. +++-..|..-|.. . ..+ .++.+.+++ .|++|=.+--...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998733221110 1121122222210 0 111 356777775 898884332110125
Q ss_pred HHHHHHHHcCCCCcEEEEcCC
Q 010044 427 KEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSN 447 (519)
.-.|-..|.....|.|.+-+.
T Consensus 133 r~~ln~~c~~~~iP~V~~~~~ 153 (287)
T PRK08223 133 RRLVFAACQQRGIPALTAAPL 153 (287)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 677777888888999997443
No 74
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.67 E-value=0.16 Score=53.32 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh-------------ch--
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-------------KK-- 391 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~-------------k~-- 391 (519)
.+|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+. |+.+ |.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~sN---L~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWSN---LQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-cccc---cCccccccHHHccCCccHHHH
Confidence 478899999999999999999999875 65 68999999742 2111 1110 10
Q ss_pred ---hhcc--c-------cCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 392 ---PWAH--E-------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 392 ---~fa~--~-------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
...+ + .... .++.+.++. .|++|-++. ..-+..++..++.....|.|++
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D--~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATD--NFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 0000 0 0011 246666665 788887764 2335566667776677888876
No 75
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.48 E-value=0.43 Score=47.16 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccC
Q 010044 312 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 381 (519)
Q Consensus 312 aV~LAgll~Alk~~g---------~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~ 381 (519)
-+|-.|++.-|+-.+ .+++.++++|+|-+. .|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345556666666554 489999999999765 57777777754 24 358899999988866
Q ss_pred CccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 010044 382 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 431 (519)
Q Consensus 382 R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~ 431 (519)
+...+.+.+.+ ......+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~---~~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHH---VTDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---ccchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 64322111100 00111248899997 9999999999998 8999997
No 76
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.45 E-value=2.3 Score=46.35 Aligned_cols=188 Identities=24% Similarity=0.262 Sum_probs=126.0
Q ss_pred cCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCc--cHHHHHHHHcCC-----Ccee----------ecCCcchhHH
Q 010044 251 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGTT-----HLVF----------NDDIQGTASV 313 (519)
Q Consensus 251 ~R~~g~~y~~~idefv~av~~~fGp~~lIqfEDf~~~--~af~iL~ryr~~-----~~~F----------nDDiQGTaaV 313 (519)
|..+-.|-.+|...|++++.+.-||+.-|-=+|+... .---+.+.|+.- ..|| .+----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 3456778889999999999999999999999999862 222246666531 2222 1222233332
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh
Q 010044 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (519)
Q Consensus 314 ~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f 393 (519)
+.-++-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|.|+... .|+..+...
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~ 256 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLE 256 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHH
Confidence 3333337888888889999999999999999999998753 53 5677889999988873 455333221
Q ss_pred ccc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 010044 394 AHE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (519)
Q Consensus 394 a~~----------~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (519)
.++ .+.+.+ |.+-.+..||||=+.. ++.+|++-.+.+.+ + +|.=-+| |++ +| +++.+.
T Consensus 257 ~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t-~e--A~~i~~ 325 (411)
T COG0334 257 LKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT-PE--ADEILL 325 (411)
T ss_pred HhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC-HH--HHHHHH
Confidence 111 011112 3344567899997665 66999999988863 2 8888888 763 33 345444
No 77
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.43 E-value=0.59 Score=50.18 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=85.1
Q ss_pred CCCceeecCC---cchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 298 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
..|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3455555322 2344457899999999999999999999999999999999998653 65 5778886
Q ss_pred CCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec---c-----CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 375 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS---S-----GVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 375 ~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~---S-----~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.. .. . . ......+|.|+++. .|+++=. + ...++|+++.+..|. +..++.=.|
T Consensus 148 ~~------~~-~-~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PR------QE-A-E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred cc------cc-c-c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 21 10 0 0 01123578888886 7877621 1 123689999999886 577777666
Q ss_pred CCCCCCCCCHHHHh
Q 010044 447 NPTSQSECTAEEAY 460 (519)
Q Consensus 447 NPt~~~E~tpe~A~ 460 (519)
. .++--++|+
T Consensus 208 R----G~vVde~AL 217 (381)
T PRK00257 208 R----GAVVDNQAL 217 (381)
T ss_pred C----CcccCHHHH
Confidence 5 444444444
No 78
>PRK15076 alpha-galactosidase; Provisional
Probab=93.37 E-value=0.15 Score=55.30 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=75.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch-hchhhccccC-----CCCCHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAHEHE-----PVNNLLD 405 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~-~k~~fa~~~~-----~~~~L~e 405 (519)
.||.|+|||+.|...+ ++..+....++ +...++|+|.+- +|.+.... .+.-++.... -.+++.+
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999854443 33333211233 235899999752 22110000 0111111111 1257889
Q ss_pred HhcccCCcEEEeccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 406 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
++++ +|++|=..+++|. .=.|+++.|.++++..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9887 8888755555421 114778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEcC-CCCC
Q 010044 449 TSQSECTAEEAYTWSKGRAIFASG-SPFD 476 (519)
Q Consensus 449 t~~~E~tpe~A~~wt~G~aifAsG-SPf~ 476 (519)
. .+..+-++.+. ..-+|++| +|+.
T Consensus 150 ~---divt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 M---AMNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred H---HHHHHHHhcCC-CCCEEEECCCHHH
Confidence 6 33344444553 44688888 6654
No 79
>PLN02928 oxidoreductase family protein
Probab=93.31 E-value=1.1 Score=47.38 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=97.6
Q ss_pred cchhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEE
Q 010044 308 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (519)
Q Consensus 308 QGTaaV~LAgll~Alk~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~l 371 (519)
+.+|--+++.+++.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566666777666653 24579999999999999999999998642 64 6788
Q ss_pred EecCCccccCCccCCchhc----hhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 372 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 372 vDs~GLi~~~R~~~l~~~k----~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
+|+..- ......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..++.
T Consensus 188 ~dr~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSWT--SEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCCC--hhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 887420 00000000 00 0111111134689999997 99998652 224699999999996 567887
Q ss_pred EcCCCCCCCCCCHHHHh-cc-cCCcEEEEcCCCCC--ccccCCEEecccCccceeechhhhH
Q 010044 444 ALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFD--PFEYNGKVFVPGQANNAYIFPGFGL 501 (519)
Q Consensus 444 aLSNPt~~~E~tpe~A~-~w-t~G~aifAsGSPf~--pv~~~G~~~~p~Q~NN~~iFPGigl 501 (519)
=.|. .++--|+|+ ++ ..|+.-.|.=-=|. |..-+. .--+..|+.+-|=++-
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~---pL~~~~nviiTPHia~ 314 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDD---PILKHPNVIITPHVAG 314 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCC---hhhcCCCEEECCcCCC
Confidence 6665 445544443 22 34655443211111 110010 0113468888887763
No 80
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.11 E-value=0.31 Score=50.51 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGsA-g~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.-++-.+-++++.+++++|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC--------------
Confidence 45678889999999999999999999999998 99999999652 43 45555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
..+|.+.+++ +|++|-..+.++.|+.++++ +.-+|+=..
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik------~gavVIDVG 230 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK------PGATVIDVG 230 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEcc
Confidence 1357788887 99999999999999998886 445665444
No 81
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.07 E-value=0.22 Score=48.97 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|++.||+++|+|..|..||+.|+.. |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457899999999999999999999864 75 689999986
No 82
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.04 E-value=0.21 Score=51.36 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|++.+++..+..+++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 5678888888888999999999999999888777654 364 689999984
No 83
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.90 E-value=0.15 Score=53.87 Aligned_cols=104 Identities=21% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhc----
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWA---- 394 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa---- 394 (519)
.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 367899999999999999999999875 65 6899999862 111100 00111111111
Q ss_pred -cccC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 395 -HEHE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 395 -~~~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
+-.+ .. .++.+.++. .|++|-++... =+...+..++.....|+|++-.
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 0000 11 134555654 78888776532 2455677777777888888643
No 84
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.89 E-value=0.38 Score=45.48 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=74.3
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCC
Q 010044 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (519)
Q Consensus 322 lk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~ 401 (519)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999743 64 6888887522 100 1111111235
Q ss_pred CHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEE
Q 010044 402 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAI 468 (519)
Q Consensus 402 ~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~-w-t~G~ai 468 (519)
+|.|.++. .|+++=.- ...+.|+++.++.|. +..++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999997 89988442 124799999999997 5667776665 5555554432 2 346654
No 85
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.76 E-value=0.51 Score=49.06 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=69.4
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc
Q 010044 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (519)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~ 396 (519)
|.+++..+... ...+++|+|+|..|..+++.+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999999998887643 243 678888773 222 22222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010044 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (519)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~ 458 (519)
.....++.++++. .|++|-++.. ..+|+.++++. .-.|.++..-+ .+-|+.|+-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1123689999986 9999987643 24678787753 33455554322 247888765
No 86
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.74 E-value=0.94 Score=48.68 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=79.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+..|=-+++.+++..|-.|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--c
Confidence 3456667888998888889999999999999999999999999643 65 67788852 111 0
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEe---ccC-----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHH
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 459 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG---~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A 459 (519)
. ......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|. -++--|+|
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTA 216 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHH
Confidence 0 00123468888876 788762 111 23578888888886 5677775554 44444444
Q ss_pred h
Q 010044 460 Y 460 (519)
Q Consensus 460 ~ 460 (519)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 4
No 87
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.67 E-value=0.31 Score=50.36 Aligned_cols=93 Identities=18% Similarity=0.331 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
=.-+|-.|++.=++-.+-+++..+++++|.+ .-|--+|.++... | ..+.+++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-------------
Confidence 3466788889999999999999999999999 7888888888542 3 346666653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
..+|.+.++. +|++|+.-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVg 224 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVG 224 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEee
Confidence 0368999997 99999999989999999983 566776554
No 88
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.63 E-value=0.42 Score=49.93 Aligned_cols=94 Identities=15% Similarity=0.284 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.=++-.|.+++.++|+|+|.| ..|..+|.+|.+. | ..+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356778889999999999999999999996 9999999999763 5 356777653 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP 448 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP 448 (519)
.++.|++++ +|++|=..+.++.+++++++ +.-||.=+| |+
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvgin~ 234 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVGINR 234 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEecccc
Confidence 168999987 99999999989999998854 567887777 44
No 89
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.57 E-value=0.23 Score=50.82 Aligned_cols=165 Identities=17% Similarity=0.110 Sum_probs=83.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccC-C------------ccCCchhchhhccc-c
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-R------------KDSLQHFKKPWAHE-H 397 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R------------~~~l~~~k~~fa~~-~ 397 (519)
.+|.|+|+|..|.++|..+... |. +++++|+.--.... + ...+++.....+.. .
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i 70 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARI 70 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCe
Confidence 3799999999999999998763 53 58888875110000 0 00000000000000 0
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCc
Q 010044 398 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP 477 (519)
Q Consensus 398 ~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~p 477 (519)
....++.++++. .|++|=+....-.+.+++++.+.+..+..+|+. ||-. + ..+.+.-+...+.-.|....||.|
T Consensus 71 ~~~~~~~~a~~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts--~-~~~~~la~~~~~~~~~~~~hp~~p 144 (308)
T PRK06129 71 RVTDSLADAVAD--ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS--A-LLASAFTEHLAGRERCLVAHPINP 144 (308)
T ss_pred EEECcHHHhhCC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC--C-CCHHHHHHhcCCcccEEEEecCCC
Confidence 112466677665 666664432221245556666655555555553 4422 1 123333333223333444445554
Q ss_pred ccc-------C-------------------CE------EecccCccceeechhhhHHHHHhCCcccChh
Q 010044 478 FEY-------N-------------------GK------VFVPGQANNAYIFPGFGLGLVISGAIRVHDD 514 (519)
Q Consensus 478 v~~-------~-------------------G~------~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~ 514 (519)
... . |+ ...||+..|-+.++.+.=++.++..--++.+
T Consensus 145 ~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~ 213 (308)
T PRK06129 145 PYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVD 213 (308)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 311 0 21 1346778777888888777776666555543
No 90
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.56 E-value=0.27 Score=53.02 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=73.5
Q ss_pred ceEEEeCcchHHHHHHH--HHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc------CCCCCH
Q 010044 332 HRFLFLGAGEAGTGIAE--LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNL 403 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~--ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~------~~~~~L 403 (519)
.||.|+|||+.|.+.+- .|+.. ..+ +-.+++|+|.+- ++.+.+...-+.++... ....++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~----~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKT----PEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcC----CCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 37999999999888663 23211 111 235799999752 22111111111111111 112578
Q ss_pred HHHhcccCCcEEEeccCCC---------------CCC---------------------CHHHHHHHHcCCCCcEEEEcCC
Q 010044 404 LDAVKVIKPTILIGSSGVG---------------RTF---------------------TKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 404 ~eav~~vkptvLIG~S~~~---------------g~F---------------------t~evv~~Ma~~~erPIIFaLSN 447 (519)
.++++. +|++|=.-..+ |+| -.++.+.|.+++++.+++=.||
T Consensus 69 ~eal~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tN 146 (423)
T cd05297 69 REALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYAN 146 (423)
T ss_pred HHHhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 999987 88877544322 112 1267777778889999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEcC-CC
Q 010044 448 PTSQSECTAEEAYTWSKGRAIFASG-SP 474 (519)
Q Consensus 448 Pt~~~E~tpe~A~~wt~G~aifAsG-SP 474 (519)
|. -+..+-+++.++ .-++++| +|
T Consensus 147 Pv---~i~t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 147 PM---AELTWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred hH---HHHHHHHHHhCC-CCEEEECCcH
Confidence 97 333344556665 5678887 44
No 91
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.55 E-value=0.38 Score=45.72 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999874 65 689999986
No 92
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.52 E-value=0.28 Score=49.58 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+||.|+|+|..|.+||..+... | -+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999998763 5 358888874
No 93
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.36 E-value=1.1 Score=45.74 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..||.|+|+|..|.++|..+... | .++.+.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 45899999999999999999764 5 356777764
No 94
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.35 E-value=0.51 Score=49.02 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++..++-.+-+|+..+++++|.+. .|--+|.+|... |. .+.+|+++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~a-------tVtv~hs~-------------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNR-----NA-------TVSVCHVF-------------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHC-----CC-------EEEEEecc--------------
Confidence 4668889999999999999999999999998 899999998652 42 46667642
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
.++|.+.+++ +|++|-..+.++.+++++|+ +..+|.=
T Consensus 198 ----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk------~gavVID 234 (287)
T PRK14176 198 ----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK------EGAVIFD 234 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC------CCcEEEE
Confidence 1257888887 99999999999999999886 4556643
No 95
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.28 E-value=0.69 Score=45.04 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.8
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc---cc-c----CCCCCH
Q 010044 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 403 (519)
Q Consensus 333 riv~~G-AGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa---~~-~----~~~~~L 403 (519)
||.|+| +|..|..+|..+.+. | .++++.|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999999753 4 467777763 111 211111111 10 0 011366
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 010044 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (519)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (519)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788876 88777 44433 3457788888654344799999999854
No 96
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.27 E-value=0.28 Score=50.34 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|++.+++..+..+++.+++++|||-|+-+|+-.|.+. |. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 46778887555568889999999999999998888653 64 689999984
No 97
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.26 E-value=0.55 Score=49.09 Aligned_cols=121 Identities=21% Similarity=0.141 Sum_probs=75.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc--cccCCccCCchhchhhccccCCCCCHHHHhcc
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL--i~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~ 409 (519)
||.|.|| |..|..+|..|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 8999999 9999999987765 25522222336999998741 11111112433332332221111467788988
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 010044 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (519)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~wt 463 (519)
.|++|=+.+.+ |- +-+++++.|++++ +.-||+-.|||. .++.--+++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 89888555543 21 2357788888994 999999999995 55555566654
No 98
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.24 E-value=0.53 Score=47.86 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999998753 53 58888863
No 99
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.21 E-value=0.35 Score=51.55 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=65.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhccc--
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~~-- 396 (519)
++|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+.- +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999875 65 78999998733 21110 0111112111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 397 ---~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
.+ .+ .++.+.+++ .|++|.++.. .=+.-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 01 11 245566665 8888877653 235566777777778898886
No 100
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.95 E-value=0.35 Score=49.44 Aligned_cols=57 Identities=30% Similarity=0.314 Sum_probs=43.0
Q ss_pred CceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 300 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 300 ~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..=+|-| -.|++.+++..+..+++++++|+|||-||.+||..+.. .|. ++|.++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4455666 45678888877778889999999999888877776654 364 679999874
No 101
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.75 E-value=0.18 Score=46.78 Aligned_cols=85 Identities=21% Similarity=0.347 Sum_probs=51.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch--hhccc---cCC---CCCHH
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~--~fa~~---~~~---~~~L~ 404 (519)
||.|+|||+.|+++|..+... | .++.|.+++.-.. +.++.... .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999999763 4 4677776653111 11221111 11110 111 25899
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 010044 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (519)
+++++ +|++| +.. +-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99987 88776 433 3356789999998754
No 102
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.67 E-value=0.37 Score=49.77 Aligned_cols=125 Identities=19% Similarity=0.276 Sum_probs=75.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHHHhc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 408 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~eav~ 408 (519)
.||.|+|+|..|.++|-.++.. |+ + +++++|..--+..++.-++.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999988653 54 2 599999832222111000110 00110000 11246766 66
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcC
Q 010044 409 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 472 (519)
Q Consensus 409 ~vkptvLIG~S~~~---g-~------Ft----~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt--~G~aifAsG 472 (519)
. .|++|=+.+.+ | . ++ +++++.|.+++.+.+|+-.|||. .+...-+++++ .-+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 88887554432 1 1 22 45667788889999999999996 56666777764 223488888
Q ss_pred CC
Q 010044 473 SP 474 (519)
Q Consensus 473 SP 474 (519)
.=
T Consensus 144 ~~ 145 (305)
T TIGR01763 144 GV 145 (305)
T ss_pred cc
Confidence 43
No 103
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.62 E-value=0.23 Score=52.21 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.+|++.||+|+|+|.-|..+|+.|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 468899999999999999999999875 65 6899999963
No 104
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=91.58 E-value=1.1 Score=47.07 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=81.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcC-cEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK-KICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~-~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (519)
||.|+|| |..|..+|..|+.. |+-..+ .+ .+.|+|.+.-. .+...-+|.+...++........+..++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~-~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKD-QPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCC-CccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999988652 441000 11 58999974321 111111243333233211111125677888
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEc
Q 010044 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 471 (519)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIFaLSNPt~~~E~tpe~A~~wt~G--~aifAs 471 (519)
+ .|++|=+.+.+ |- +=+++++.|+++ ++.-||+-.|||. .++.--+++++.+ +-+|.|
T Consensus 75 ~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 75 D--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred C--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 7 89988665554 21 124677888889 4899999999995 5666666666632 238899
Q ss_pred CCCCCcc
Q 010044 472 GSPFDPF 478 (519)
Q Consensus 472 GSPf~pv 478 (519)
|.=.+..
T Consensus 150 gt~LDs~ 156 (324)
T TIGR01758 150 LTRLDHN 156 (324)
T ss_pred eeehHHH
Confidence 8755543
No 105
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.49 E-value=1.3 Score=46.51 Aligned_cols=111 Identities=23% Similarity=0.179 Sum_probs=75.1
Q ss_pred CCceeecCC---cchhHHHHHHHHHHHH------------------HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhh
Q 010044 299 THLVFNDDI---QGTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (519)
Q Consensus 299 ~~~~FnDDi---QGTaaV~LAgll~Alk------------------~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~ 357 (519)
.|.|+|-.- +..|=-++|.+|+..| ..|..|.++++.|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 345555443 2344456777777777 567789999999999999999999999653
Q ss_pred cCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHH
Q 010044 358 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 433 (519)
Q Consensus 358 ~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~M 433 (519)
|+ ++..+|.. ..+. . .-........+|.+.++. .|++.-.- ..-|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~-----~~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--R-----AGVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--h-----hccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 67778772 1111 0 000112234679999987 99988542 22378999999999
Q ss_pred H
Q 010044 434 A 434 (519)
Q Consensus 434 a 434 (519)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
No 106
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.49 E-value=0.45 Score=48.21 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=56.1
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh
Q 010044 315 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (519)
Q Consensus 315 LAgll~Alk~-~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f 393 (519)
-.|++++++. .+..+.+.+++|+|||.+|-+++..+.. .|+ ++|+++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 4567777774 5678999999999999999999888874 254 679999885 222 11222222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 010044 394 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (519)
Q Consensus 394 a~~~-~~~-~~L~eav~~vkptvLIG~S~~~ 422 (519)
.... -.. .++.+++.. +|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123455554 89999988755
No 107
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.33 E-value=0.35 Score=43.40 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999886 65 78999998733
No 108
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.23 E-value=0.53 Score=48.99 Aligned_cols=125 Identities=19% Similarity=0.283 Sum_probs=78.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~--~~~~~L~eav~~ 409 (519)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999988764 255 4689999974211111111133222 333211 11135554 776
Q ss_pred cCCcEEEeccCCC---CCCC------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcC
Q 010044 410 IKPTILIGSSGVG---RTFT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 472 (519)
Q Consensus 410 vkptvLIG~S~~~---g~Ft------------~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt--~G~aifAsG 472 (519)
+|++|=+.+.+ | -| +++++.|.+++.+-+|+-.|||. .....-+++++ .-+-+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecC
Confidence 89987555442 2 23 36778888999999999999996 46666666653 224588887
Q ss_pred CC
Q 010044 473 SP 474 (519)
Q Consensus 473 SP 474 (519)
.-
T Consensus 146 t~ 147 (312)
T cd05293 146 CN 147 (312)
T ss_pred ch
Confidence 54
No 109
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.21 E-value=1 Score=47.07 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=78.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC--CCCCHHHHhcc
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~--~~~~L~eav~~ 409 (519)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+ + .++-.-+|.+.. .+.+-.. .-.++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999988754 365 3689999998 3 222211244432 1111111 11346788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC----HHHHhcccCC--cEEE
Q 010044 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECT----AEEAYTWSKG--RAIF 469 (519)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~t----pe~A~~wt~G--~aif 469 (519)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||. .+. .+-++++++= +-+|
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---Dv~~~i~t~~~~~~s~~p~~rvi 143 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV---NSTVPIAAEVLKKAGVYDPKRLF 143 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---hhHHHHHHHHHHHhcCCCHHHEE
Confidence 99888665553 21 2246777888899999999999996 332 4444555421 2477
Q ss_pred EcCC
Q 010044 470 ASGS 473 (519)
Q Consensus 470 AsGS 473 (519)
++|.
T Consensus 144 G~~~ 147 (310)
T cd01337 144 GVTT 147 (310)
T ss_pred eeec
Confidence 7774
No 110
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.67 E-value=0.89 Score=47.17 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
=.-+|-+|++.=++-.+-+++.+++|++|.+ ..|.-+|.||... |. .+.+|+++ +
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~-------T----- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF-------T----- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC-------C-----
Confidence 3466788889999999999999999999998 8899999988642 42 34455442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
++|.+.+++ +|++|-..+.++.|+.|+|+ +..+|.=
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk------~gavvID 227 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK------EGAIVID 227 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcC------CCcEEEE
Confidence 247788887 99999999999999999997 4555543
No 111
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.66 E-value=0.13 Score=48.09 Aligned_cols=90 Identities=24% Similarity=0.400 Sum_probs=50.8
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC-------------CccccCCccCCchhchhhc
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWA 394 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~-------------GLi~~~R~~~l~~~k~~fa 394 (519)
.+.-.||||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~ 81 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFD 81 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccc
Confidence 35678999999999999999998763 53 34445542 0001 00000000 0022
Q ss_pred cc----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 010044 395 HE----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 434 (519)
Q Consensus 395 ~~----~~~--~~~L~eav~~vkptvLIG~S-----~~~g~Ft~evv~~Ma 434 (519)
+. ... ...|.+.++. .|++|+.. ..|-+||+++++.|.
T Consensus 82 ~~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 82 KADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 21 011 1368888887 89999753 334699999999996
No 112
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.41 E-value=0.82 Score=47.52 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.-++-.+-+++.+++|++|.+. .|.-+|.||...-.. .| ..+.+|+++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKF-AN-------ATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCccc-CC-------CEEEEEeCCc-------------
Confidence 4667788999999999999999999999764 577777777541000 12 2455666431
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.+|.+.++. +|++|+..+.++.+++++|+ +.-+|.-.+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDVG 233 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDVG 233 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 368999998 99999999999999999994 555665444
No 113
>PRK07574 formate dehydrogenase; Provisional
Probab=90.24 E-value=2.6 Score=45.42 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=84.5
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (519)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 3458899999999999999999998643 54 5777887532 00 0 0 0011 1112357999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEEEEcCCCCCccc
Q 010044 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSPFDPFE 479 (519)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~w--t~G~aifAsGSPf~pv~ 479 (519)
+++. .|+++=.-- .-++|+++++..|. +..++.=.|. .++.-|+|+.. ..|+.-.|..-=|.+--
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~EP 315 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQP 315 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCCC
Confidence 9987 898874321 12689999999996 5678876665 44555444421 35665545432222110
Q ss_pred c-CCEEecccCccceeechhhh
Q 010044 480 Y-NGKVFVPGQANNAYIFPGFG 500 (519)
Q Consensus 480 ~-~G~~~~p~Q~NN~~iFPGig 500 (519)
. ....+ -+..|+.+-|=++
T Consensus 316 lp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 316 APADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred CCCCChH--HhCCCeEECCccc
Confidence 0 00000 2345788888665
No 114
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.20 E-value=1.9 Score=45.14 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=80.4
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (519)
-||+|.|| |..|..+|..|+.. ++--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 99999999988752 43100011379999986421 111000122211122111111257889998
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEc
Q 010044 409 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 471 (519)
Q Consensus 409 ~vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~wt~G--~aifAs 471 (519)
+ +|++|=+.+.+.. -| +++++.|.+++ ..-||+-.|||. .++.--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 7 9998866655421 23 56778888886 699999999995 5555566666422 223777
Q ss_pred CCCCC
Q 010044 472 GSPFD 476 (519)
Q Consensus 472 GSPf~ 476 (519)
|.=.+
T Consensus 153 gt~LD 157 (325)
T cd01336 153 LTRLD 157 (325)
T ss_pred eehHH
Confidence 75444
No 115
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.17 E-value=0.65 Score=48.08 Aligned_cols=85 Identities=29% Similarity=0.452 Sum_probs=54.9
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc
Q 010044 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (519)
Q Consensus 317 gll~Alk~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa 394 (519)
|+..+|+-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++ +.+|...| .+.|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR----t~~ra~~L---a~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR----TRERAEEL---ADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC----CHHHHHHH---HHHhh
Confidence 5678888766 456689999999999999999888774 64 78999998 44443222 22232
Q ss_pred ccc-----CCCCCHHHHhcccCCcEEEeccCCC
Q 010044 395 HEH-----EPVNNLLDAVKVIKPTILIGSSGVG 422 (519)
Q Consensus 395 ~~~-----~~~~~L~eav~~vkptvLIG~S~~~ 422 (519)
+.. ....++.. .+ ..|++|=++..|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 21 489999777655
No 116
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.14 E-value=1 Score=46.68 Aligned_cols=91 Identities=19% Similarity=0.323 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.-++-.|.+++.++++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456788889999999999999999999975 467788887754 24 245666542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (519)
..+|.+.+++ +|++|...+.++.|++++|+ +..+|+=.
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik------~gavVIDv 229 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK------EGAVVIDV 229 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEe
Confidence 1368899997 99999999999999999995 45566544
No 117
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.10 E-value=1.1 Score=45.30 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998764 53 68888874
No 118
>PRK05442 malate dehydrogenase; Provisional
Probab=90.09 E-value=1 Score=47.20 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=76.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCCh-hhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHh
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPV-EETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~-eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (519)
.||.|+|| |..|..+|-.|+.. |+-. .+ ...|.|+|.+.-. ..+..-+|.+...++-+...-..+..+.+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~-~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~ 78 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQ-PVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAF 78 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCC-ccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHh
Confidence 38999998 99999998877653 3310 00 1289999985321 11111124433323322211113566778
Q ss_pred cccCCcEEEeccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC---cEEE
Q 010044 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG---RAIF 469 (519)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~wt~G---~aif 469 (519)
++ +|++|=+.+. +| .+=+++++.+.+++ ...||+-.|||. .++.--+++++.| +-||
T Consensus 79 ~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s~g~p~~rVi 153 (326)
T PRK05442 79 KD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNAPDLPAENFT 153 (326)
T ss_pred CC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHcCCCCHHHEE
Confidence 87 9988855443 33 12245677778866 699999999995 5555555555522 1266
Q ss_pred Ec
Q 010044 470 AS 471 (519)
Q Consensus 470 As 471 (519)
++
T Consensus 154 G~ 155 (326)
T PRK05442 154 AM 155 (326)
T ss_pred ee
Confidence 66
No 119
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.01 E-value=1.6 Score=45.71 Aligned_cols=130 Identities=16% Similarity=0.079 Sum_probs=76.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (519)
.||.|+|| |..|..+|-.|+.. |+-.-.-...+.|+|.+.-. ..+..-+|.+..-++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 48999999 99999998877652 44100001379999985422 111111243333233221111135567788
Q ss_pred ccCCcEEEeccCCCC--CCC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccCC---cEEEE
Q 010044 409 VIKPTILIGSSGVGR--TFT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG---RAIFA 470 (519)
Q Consensus 409 ~vkptvLIG~S~~~g--~Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~wt~G---~aifA 470 (519)
+ .|++|=+.+.+. --| +++.+.+.+++ +.-||+-.|||. .++.--+++++.| +-+|+
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~sg~~p~~~ViG 152 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNAPDIPPDNFTA 152 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHcCCCChHheEE
Confidence 7 999986555431 123 46777788889 499999999996 4455455555421 33566
Q ss_pred c
Q 010044 471 S 471 (519)
Q Consensus 471 s 471 (519)
+
T Consensus 153 ~ 153 (322)
T cd01338 153 M 153 (322)
T ss_pred e
Confidence 5
No 120
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.87 E-value=0.46 Score=48.79 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=53.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch--hh------ccccCCCCCH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PW------AHEHEPVNNL 403 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~--~f------a~~~~~~~~L 403 (519)
.||.|+|+|+.|.++|..|... | .++.++|+..= +.+.+....+ .+ ........++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999999764 4 24777777311 1011111100 00 0001122478
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
.|+++. .|++|=+-. . ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~v~-~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVAVP-S-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEECc-h-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 888775 777663322 2 23577776665 344667778864
No 121
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=89.79 E-value=1.8 Score=45.19 Aligned_cols=128 Identities=24% Similarity=0.345 Sum_probs=80.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~--~~~~~L~eav~~ 409 (519)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999998864 254 26899999876 122111244322 111111 011246788887
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHHHhcccC--CcEEEEcC
Q 010044 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--GRAIFASG 472 (519)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~E~tpe~A~~wt~--G~aifAsG 472 (519)
.|++|=+.+.+.. .=+++.+.+.+++...||+-.|||.. ++.+..+-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988855554321 22467777888999999999999972 12335555665431 12488888
Q ss_pred CCCC
Q 010044 473 SPFD 476 (519)
Q Consensus 473 SPf~ 476 (519)
. .+
T Consensus 146 ~-LD 148 (312)
T TIGR01772 146 T-LD 148 (312)
T ss_pred c-ch
Confidence 5 55
No 122
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.75 E-value=1.1 Score=46.64 Aligned_cols=92 Identities=23% Similarity=0.381 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.=++-.|-+++..+++|+|. |..|.-+|.+|.+. |. .+.++.+ +.
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC------
Confidence 46677888999999999999999999999 99999999999763 53 3444422 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.+|.+++++ +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268899998 99999999999999998854 566776655
No 123
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.73 E-value=0.59 Score=49.59 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=73.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~ 404 (519)
...-||+|+|.|-+|+--|++.+ |+. .++.+.|.+ .+| |....-.|... ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 67889999999999999999875 442 467777763 333 44444444432 12235799
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCCCCcEE----------EEcCCCCCCCCCCHHH
Q 010044 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 458 (519)
Q Consensus 405 eav~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~~~erPII----------FaLSNPt~~~E~tpe~ 458 (519)
|++++ +|++||. +..|.+.|+|+++.|. +..+| |-=|.||++.+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9999987 4456689999999997 34444 4556777776666543
No 124
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.73 E-value=0.72 Score=50.36 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=75.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh-cCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~-~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~ 404 (519)
.||+|+||||+ -+..|+..+.+. ..++ ...|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444454544432 2343 47899999753 3322122222223222 112 25899
Q ss_pred HHhcccCCcEEEeccC--------------------------CCCC--------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010044 405 DAVKVIKPTILIGSSG--------------------------VGRT--------FTKEVIEAMASFNEKPLILALSNPTS 450 (519)
Q Consensus 405 eav~~vkptvLIG~S~--------------------------~~g~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (519)
||+++ +|.+|=.-. .||. +-.++++.|.++|.+.+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99988 777663322 2232 2258888999999999999999998
Q ss_pred CCCCCHHHHhc-ccCCcEEEEcCCCCC
Q 010044 451 QSECTAEEAYT-WSKGRAIFASGSPFD 476 (519)
Q Consensus 451 ~~E~tpe~A~~-wt~G~aifAsGSPf~ 476 (519)
..+|-. +++ ++.-++|=-+-+|+.
T Consensus 147 -~~vt~~-~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEA-LRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHH-HHHHCCCCCEEEECCcHHH
Confidence 444432 222 333455434444543
No 125
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.68 E-value=0.59 Score=45.53 Aligned_cols=100 Identities=13% Similarity=0.247 Sum_probs=59.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~ 409 (519)
++.||.|+|+|..|.+++..+... |.. -.++++++++. + .+.+...+++|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999988653 310 12346666542 0 111222222221 1122567788875
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
.|++| ++..+. .-+++++.++.+-+..+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 78776 444443 4488888887543445777777654
No 126
>PRK14851 hypothetical protein; Provisional
Probab=89.45 E-value=1.3 Score=50.99 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccC--Cc-----cCCchhchhhccc---
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 396 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~--R~-----~~l~~~k~~fa~~--- 396 (519)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-.++ |. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578999999999999999999999875 75 789999976332211 10 0111122222211
Q ss_pred --c---------CCC--CCHHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEEcC----------CCCCCC
Q 010044 397 --H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS----------NPTSQS 452 (519)
Q Consensus 397 --~---------~~~--~~L~eav~~vkptvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaLS----------NPt~~~ 452 (519)
. ..+ .++.+.+++ .|++|-..... .| ++..|...|..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 246677775 89998555321 12 345677778888899998754 665
Q ss_pred CCCHHHHhcccCC
Q 010044 453 ECTAEEAYTWSKG 465 (519)
Q Consensus 453 E~tpe~A~~wt~G 465 (519)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5677888887666
No 127
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.43 E-value=1.4 Score=45.94 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc
Q 010044 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (519)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~ 396 (519)
|.+++..+.. -..++++|+|+|..|..++..+... .++ +++.++|+. .++ .......+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455554432 2347999999999998888777543 233 678888763 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 010044 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (519)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~ 458 (519)
.....++.++++. +|++|-++.. ..+|+.++++. .--|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123688999986 8999877543 34677777653 2223333 4433346888765
No 128
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.26 E-value=0.71 Score=47.64 Aligned_cols=127 Identities=21% Similarity=0.336 Sum_probs=76.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC-CCCCHHHHhcccC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~-~~~~L~eav~~vk 411 (519)
||.|+|+|..|..+|-.++.. |+ ...++++|.+-=...+...++.+. .+|..... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 799999999999999988653 54 368999997411011000012211 12211110 01344 55776
Q ss_pred CcEEEeccCCCCC----C----------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcCCCC
Q 010044 412 PTILIGSSGVGRT----F----------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 475 (519)
Q Consensus 412 ptvLIG~S~~~g~----F----------t~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifAsGSPf 475 (519)
+|+.|=+.+.+.. . =+++++.+.+++..-+|+-.+||. +....-+++.+. -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 8887754444311 1 146778888889999999999995 666666666641 24488888655
Q ss_pred C
Q 010044 476 D 476 (519)
Q Consensus 476 ~ 476 (519)
+
T Consensus 145 D 145 (308)
T cd05292 145 D 145 (308)
T ss_pred h
Confidence 3
No 129
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=89.16 E-value=3.1 Score=44.90 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcch
Q 010044 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 341 (519)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs 341 (519)
.++|++++.+.+|-. .+.+-+.+++.+ +-+..++.-..+.|...|++|+|.+.
T Consensus 248 T~~~L~~la~~~g~~---------~~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~ 300 (427)
T PRK02842 248 TRAWLEAAAAAFGID---------PDGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQ 300 (427)
T ss_pred HHHHHHHHHHHhCcC---------HhHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCch
Confidence 689999999988631 111222233333 23345566666778889999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEE
Q 010044 342 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILI 416 (519)
Q Consensus 342 Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-----~~~~~~~L~eav~~vkptvLI 416 (519)
-.+++++.|.+. .|+.. ..+-+. +.++ +.+...-+.+.. +..+...+.+.|+..|||.||
T Consensus 301 ~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDlli 365 (427)
T PRK02842 301 LEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVV 365 (427)
T ss_pred hHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEE
Confidence 899999998874 37632 111110 0111 111111111111 112223568899999999999
Q ss_pred ecc
Q 010044 417 GSS 419 (519)
Q Consensus 417 G~S 419 (519)
|-|
T Consensus 366 g~~ 368 (427)
T PRK02842 366 CGL 368 (427)
T ss_pred ccC
Confidence 987
No 130
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.14 E-value=1.6 Score=41.70 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
--+|-.|++.-++-.+-+++..+++++|.+. .|.-+|.||... |. .+.+|+++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC--------------
Confidence 4567888899999999999999999999985 888888888652 32 24445543
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.++|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1457788886 99999999999999999986
No 131
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.09 E-value=2.2 Score=44.79 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=64.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHhhcCCChhhhcCcEEEEecCCccccCCccCC---chhchhhcccc------C-
Q 010044 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL---QHFKKPWAHEH------E- 398 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~---~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l---~~~k~~fa~~~------~- 398 (519)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-++|++|-+...+.-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 233334532 122456799998887653112 12222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
..-++.|.++...+||+|-+++.. ...+-+.+.+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012788888777899999999633 33333334444 4678885
No 132
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.03 E-value=1.1 Score=46.67 Aligned_cols=126 Identities=16% Similarity=0.295 Sum_probs=78.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-ccCC--CCCHHHHhcc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP--VNNLLDAVKV 409 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~~--~~~L~eav~~ 409 (519)
||.|+|||..|..+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ..-. .++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998875 255 3689999973111111111233221 2221 0001 133 466776
Q ss_pred cCCcEEEeccCCC---CCCC--------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 010044 410 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (519)
Q Consensus 410 vkptvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifA 470 (519)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .++.--+++++. -+-+|+
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 89988666543 3 23 57788888999999999999995 455555555541 245788
Q ss_pred cCCCCC
Q 010044 471 SGSPFD 476 (519)
Q Consensus 471 sGSPf~ 476 (519)
||.=.+
T Consensus 143 ~gt~LD 148 (307)
T cd05290 143 TGTMLD 148 (307)
T ss_pred ccchHH
Confidence 875433
No 133
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.94 E-value=1.3 Score=46.21 Aligned_cols=95 Identities=15% Similarity=0.292 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhc
Q 010044 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (519)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (519)
-+|-+|++.-++..+.+++.+++||+|.+. .|.-+|.||.+.+.+ .| ..+.+|.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 456678888999999999999999999764 678888887653211 12 244455432
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 391 ~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
..+|.+.+++ +|++|+..+.++.|++++|+ +.-+|.-.+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDVg 235 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDVG 235 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEee
Confidence 1358899987 99999999999999999994 566775443
No 134
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.91 E-value=1.3 Score=46.31 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.-++-.+.+++.++|+|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4566788888889999999999999999 999999999999753 53 45666432 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
+|.|++++ +|++|-+-+.++.+++++++ +.-+|.=++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 47888887 99999988888888887743 455665555
No 135
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.84 E-value=1.5 Score=44.86 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=62.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc-C
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v-k 411 (519)
||-|+|.|..|..+|..+.+. | -++.+.|+. .++ ....++. ......++.|.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHc---CCcccCCHHHHHhhcCC
Confidence 789999999999999998763 4 356667763 111 2221111 111224566655432 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHH
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 457 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~E~tpe 457 (519)
+|++|= +...+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 888999888754 3568999999865 555554
No 136
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.65 E-value=1.7 Score=45.24 Aligned_cols=82 Identities=24% Similarity=0.322 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhc
Q 010044 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (519)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k 390 (519)
-+|-.|++.=++-.+-+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 44667888888889999999999999975 467778877754 242 46666643
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 391 ~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.++|.+.+++ +|++|...+.++.++.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 137
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.60 E-value=2.3 Score=44.70 Aligned_cols=122 Identities=17% Similarity=0.104 Sum_probs=74.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc--ccCCccCCchhchhhccccCCCCCHHHHhc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi--~~~R~~~l~~~k~~fa~~~~~~~~L~eav~ 408 (519)
-||.|+|| |..|..+|-.|+.. |+-.-.-...|.|+|.+.-. ..+..-+|.+..-++.+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 99999999988652 54100011279999986311 111111233332222221111145667788
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 010044 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 463 (519)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt~~~E~tpe~A~~wt 463 (519)
+ .|++|=+.+.+ |- +=+++++.+++++. .-||+--|||. .++.--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 89988555543 21 12467778888987 99999999995 55555666665
No 138
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.48 E-value=1.1 Score=49.16 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=54.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh------------chhhccc--c
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 397 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~------------k~~fa~~--~ 397 (519)
.||.|+|+|..|.+||..++.+ |. ++.++|..- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999999764 54 577888731 110011100 0001000 0
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEEcC
Q 010044 398 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 398 ~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLS 446 (519)
....++.|++++ +|++| .+..... +.+++.+.+.+..+.-.|++.|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~Ss 115 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSS 115 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 122578888876 78777 4443332 4555666565554544565544
No 139
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.37 E-value=1.9 Score=44.76 Aligned_cols=90 Identities=19% Similarity=0.342 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.-++-.+-+|+.++++++|.+. .|.-+|.||.+ .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567888899999999999999999999764 68888888854 242 46666652
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
..+|.+.+++ +|++|-..+.++.|++|+|+ +..+|+=
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVID 228 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK------EGAIVID 228 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCcEEEE
Confidence 1358888887 99999999999999999997 4556653
No 140
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.31 E-value=1.9 Score=42.67 Aligned_cols=120 Identities=11% Similarity=0.170 Sum_probs=70.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
.||.|+|+|..|..+|..+.+. |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 42 124678887631 1122222222 01112467777764
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-CcEEEEcCCCCCcccc
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASGSPFDPFEY 480 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~-G~aifAsGSPf~pv~~ 480 (519)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|.. +..++ ..-|..|..+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv-~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVV-RAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEE-EecCCchHHH
Confidence 78776 44433 45778888887544 358888998773 334444443 32233 3456666544
No 141
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.27 E-value=1.1 Score=45.97 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|++.+++..+... +.+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 46777887666653 4699999999999999888865 364 679999984
No 142
>PLN02602 lactate dehydrogenase
Probab=88.25 E-value=1.1 Score=47.52 Aligned_cols=125 Identities=19% Similarity=0.322 Sum_probs=79.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC---CCHHHHhc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~---~~L~eav~ 408 (519)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ..+ .+..+ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998864 265 3689999974211111111233222 22221 111 34544 67
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEc
Q 010044 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 471 (519)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifAs 471 (519)
+ +|++|=+.+.+ | -|. ++++.|.+++.+-+|+-.|||. .....-+++++. -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 99998665543 3 233 6788888999999999999995 566666677652 2457888
Q ss_pred CCCC
Q 010044 472 GSPF 475 (519)
Q Consensus 472 GSPf 475 (519)
|.--
T Consensus 179 gt~L 182 (350)
T PLN02602 179 GTNL 182 (350)
T ss_pred cchH
Confidence 7433
No 143
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.04 E-value=1.4 Score=46.24 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
.||.|+|||..|.|||.+++.+ |+ ++.+.|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999999864 64 5667775
No 144
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.84 E-value=5.8 Score=41.57 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=84.1
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (519)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. + . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999999643 64 577888731 1 1 10 11111 12347999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEEcCCCC--Cc
Q 010044 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPF--DP 477 (519)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~-~w-t~G~aifAsGSPf--~p 477 (519)
+++. .|+++=.-- .-+.|+++.++.|. +..++.=.|. .++--|+|+ ++ ..|+.-.|.=-=| +|
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP 271 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEP 271 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCC
Confidence 9987 898875431 13689999999996 6778776665 333333332 22 3565443321111 11
Q ss_pred cccCCEEecccCccceeechhhhHHH
Q 010044 478 FEYNGKVFVPGQANNAYIFPGFGLGL 503 (519)
Q Consensus 478 v~~~G~~~~p~Q~NN~~iFPGiglG~ 503 (519)
.. + .. --+..|+++-|=++-..
T Consensus 272 ~~-~-~p--L~~~~nvilTPHia~~t 293 (333)
T PRK13243 272 YY-N-EE--LFSLKNVVLAPHIGSAT 293 (333)
T ss_pred CC-C-ch--hhcCCCEEECCcCCcCH
Confidence 11 1 11 12356888888776444
No 145
>PLN02306 hydroxypyruvate reductase
Probab=87.83 E-value=4.1 Score=43.88 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=99.8
Q ss_pred cCCCceeecCC---cchhHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcchHHHHHHHHHHH
Q 010044 297 GTTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 297 r~~~~~FnDDi---QGTaaV~LAgll~Alk~---------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
+..|.|.|--- ..+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34677777432 23344456666666542 1346889999999999999999999865
Q ss_pred HHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 010044 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (519)
Q Consensus 353 ~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~--------~--~~~~~~L~eav~~vkptvLIG~---- 418 (519)
+| |+ +++.+|+..- . .+......+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 6888887421 0 01100001100 0 0112589999987 9998873
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEEEEcCC-CC--CccccCCEEecccCccce
Q 010044 419 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGS-PF--DPFEYNGKVFVPGQANNA 493 (519)
Q Consensus 419 S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~-w-t~G~aifAsGS-Pf--~pv~~~G~~~~p~Q~NN~ 493 (519)
....|.|+++.++.|. +..++.=.|. .++-=|+|+. + ..|+. .+.|- =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aR----G~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASR----GPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccc---hHhhCCCE
Confidence 1224799999999996 5667665554 5555544442 2 24553 33221 01 111 010 11245788
Q ss_pred eechhhhH
Q 010044 494 YIFPGFGL 501 (519)
Q Consensus 494 ~iFPGigl 501 (519)
.+-|=++-
T Consensus 316 ilTPHiag 323 (386)
T PLN02306 316 VVVPHIAS 323 (386)
T ss_pred EECCcccc
Confidence 88887763
No 146
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.62 E-value=2.1 Score=44.65 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=71.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+=.-+|-+|++.=++..+-+++..++|++|.+ ..|.-+|.||.. .|. .+.+|+|+ +
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T---- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T---- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888899999999999999999999975 468888888754 243 35556552 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
.+|.+.+++ +|++|-..+.++.+++++|+ +.-||.=
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk------~GavVID 229 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN------PESIVID 229 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC------CCCEEEE
Confidence 358888887 99999999999999999997 4456543
No 147
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.58 E-value=0.64 Score=45.75 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468899999999999999999999875 75 789999987
No 148
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.47 E-value=2.1 Score=44.80 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
-.-+|-+|++.=++-.|-+|+.+++||+|-+. .|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 35667788889999999999999999999764 57777777754 24 246677653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
.++|.+.+++ +|++|-..+.++.|+.|+|+ +.-+|+=
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk------~gavVID 237 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK------PGAAVID 237 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEE
Confidence 1358888987 99999999999999999997 4556643
No 149
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.31 E-value=0.96 Score=44.13 Aligned_cols=110 Identities=15% Similarity=0.275 Sum_probs=67.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLDA 406 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L~ea 406 (519)
||+|+||||+-.. .++...+.+...++ .+.|+|+|.+ ..|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998543 44444444434453 4689999985 23321112223333332 112 2589999
Q ss_pred hcccCCcEEEeccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 010044 407 VKVIKPTILIGSSGVG----------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (519)
Q Consensus 407 v~~vkptvLIG~S~~~----------------------------g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (519)
+++ +|.+|=.-.+| |.|. .|+.+.|.+++++--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 89887443333 2221 48889999999999999999998
Q ss_pred CCCCCH
Q 010044 451 QSECTA 456 (519)
Q Consensus 451 ~~E~tp 456 (519)
+++|-
T Consensus 148 -~~vt~ 152 (183)
T PF02056_consen 148 -GIVTE 152 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 55553
No 150
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.29 E-value=2.3 Score=44.39 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.-++..+.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+ +
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~-------T------ 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSA-------T------ 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCC-------C------
Confidence 4567888899999999999999999999764 67777777754 242 45566653 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
++|.+.+++ +|++|-..+.++.++.++|+ +.-||+=
T Consensus 195 -----------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gaiVID 230 (294)
T PRK14187 195 -----------RDLADYCSK--ADILVAAVGIPNFVKYSWIK------KGAIVID 230 (294)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 357888887 99999999999999999997 4556653
No 151
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.20 E-value=0.6 Score=46.79 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468899999999999999999999875 75 689999987
No 152
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.17 E-value=2.3 Score=45.46 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=21.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
-...||.|+|||+-|+++|..+...
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhc
Confidence 3457999999999999999999763
No 153
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.10 E-value=0.94 Score=49.69 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=63.5
Q ss_pred eeeecCCCccHHHHHHHHcC-CCc--eeecCCcchhHHHHHHHHHHHHHhC--------CCcccceEEEeCcchHHHHHH
Q 010044 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIG--------GTLAEHRFLFLGAGEAGTGIA 347 (519)
Q Consensus 279 IqfEDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~g--------~~l~d~riv~~GAGsAg~GIA 347 (519)
|.+|=+....-.++.++|.- ..| ++||+....+....+-++.+++... ..-.+..+||+|||.||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777788889999974 455 3577777888888889998887532 224456899999999999999
Q ss_pred HHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 348 ELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 348 ~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 99865 364 56666654
No 154
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.08 E-value=2.3 Score=45.36 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=61.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCC--CCCH-H
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNL-L 404 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~--~~~L-~ 404 (519)
.+++.+++|+|+|.+|.++|+.|+.. | .+++++|++.- +.+......+...... ..+. .
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~------~~~~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEE------DQLKEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCch------HHHHHHHHHHHhcCCEEEeCCcch
Confidence 36788999999999999999999763 5 47899988530 0111111111100000 0111 1
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCC
Q 010044 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGS 473 (519)
+.+. ++|++|-.++.. .-++++..+=. ..-||+ + .+|+.... ...+.|.-|||
T Consensus 64 ~~~~--~~d~vv~~~g~~-~~~~~~~~a~~--~~i~~~---~----~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 64 EFLE--GVDLVVVSPGVP-LDSPPVVQAHK--KGIEVI---G----EVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hHhh--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE---e----HHHHHHhh----cCCCEEEEeCC
Confidence 2233 489888666543 45665555432 345665 2 23332222 23678888998
No 155
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.00 E-value=1.2 Score=44.98 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=58.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhcc------ccCCCCCHH
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH------EHEPVNNLL 404 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~------~~~~~~~L~ 404 (519)
||.|+|+|..|..+|..|... | .+++++|+..-..+ .+... ...+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA----EINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH----HHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999999763 4 35778887431110 01100 000000 001124677
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010044 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (519)
++++. +|++| ++... ...+++++.+..+ .+..+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 78775 78777 33323 3678888877754 34568888887543
No 156
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.98 E-value=2.9 Score=41.92 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=57.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccC-CccCCch--hchhhccccCCCCCHHHHhcc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FKKPWAHEHEPVNNLLDAVKV 409 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R~~~l~~--~k~~fa~~~~~~~~L~eav~~ 409 (519)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+. +...+.- .....-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999998763 4 35778877 211000 0000100 000000000112456665554
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010044 410 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (519)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (519)
+|++|=+.-. ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 7866633322 3578899888763 34567888999863
No 157
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.90 E-value=3 Score=43.22 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=70.0
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLD 405 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~e 405 (519)
....+++|+|+|..|..+++.+... .+ .++|+++|+. .++ ...+...+.+. .....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3578999999999999999877553 13 2678888773 222 22333333221 112368899
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHHhcccCCcEEEE
Q 010044 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEAYTWSKGRAIFA 470 (519)
Q Consensus 406 av~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~A~~wt~G~aifA 470 (519)
++++ .|++|-++... .+|+.++++ +.-.|-+. |++..+-|+.++- ++ +++.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~-~~--~a~~~vD 241 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA-IR--RASVYVD 241 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH-Hh--cCcEEEc
Confidence 9986 99998776543 357776663 22244444 5566678999854 33 3454443
No 158
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.82 E-value=0.62 Score=45.21 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 468899999999999999999999875 75 7899999873
No 159
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.76 E-value=2.5 Score=43.93 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+=.-+|-+|++.=++-.+-+++.+++|++|.+. .|--+|.||.. .|. .+.+|+|+ +
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 445677888999999999999999999999764 67778887754 242 35555553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
++|.+.+++ +|++|-..+.++.|++++|+ +.-||+=-.
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDvG 229 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 229 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEec
Confidence 358888887 99999999999999999997 455665443
No 160
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.76 E-value=1.4 Score=45.00 Aligned_cols=119 Identities=18% Similarity=0.365 Sum_probs=72.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCcc----CCchhchhhcccc---CCCCCHHHH
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 406 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~----~l~~~k~~fa~~~---~~~~~L~ea 406 (519)
|.|+|||..|.++|..++. .|+ + .++++|.+ +++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999998764 254 1 79999986 22211 011110 010000 011354 45
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 010044 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (519)
Q Consensus 407 v~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifA 470 (519)
++. +|++|=+.+.+ | -+-+++++.|.+++...+|+-.|||. ......++++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 776 89988433322 1 12347888899999999999999996 455555666652 125888
Q ss_pred cCCC
Q 010044 471 SGSP 474 (519)
Q Consensus 471 sGSP 474 (519)
+|.-
T Consensus 139 lgt~ 142 (300)
T cd01339 139 MAGV 142 (300)
T ss_pred ecch
Confidence 8853
No 161
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.64 E-value=2.4 Score=44.05 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.-++-.|-+|+.+++|++|.+ ..|.-+|.||... ..|. .+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC--------------
Confidence 466788889999999999999999999975 4677888777531 0132 35555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.++|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368899997 99999999999999999997
No 162
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.58 E-value=1.1 Score=49.27 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcC-CCc--eeecCCcchhHHHHHHHHHHHHHh--------CCCcccce
Q 010044 265 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEHR 333 (519)
Q Consensus 265 fv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~--------g~~l~d~r 333 (519)
.+..+.... |+ |..|=+....-.++.++|.- ..| ++||+..+.+....+-+++.++.. ...-.+.+
T Consensus 138 ~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 214 (515)
T TIGR03140 138 ALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYD 214 (515)
T ss_pred HHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCC
Confidence 333344444 43 55565777788888999974 455 357777788888888888877654 12244678
Q ss_pred EEEeCcchHHHHHHHHHHH
Q 010044 334 FLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~ 352 (519)
+||+|||+||+..|..+.+
T Consensus 215 VvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 215 VLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 9999999999999998865
No 163
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.43 E-value=2.7 Score=43.77 Aligned_cols=92 Identities=20% Similarity=0.404 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
=.-+|-+|++.-++-.|-+|+.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 34667788888899999999999999999764 67777777754 242 45566542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (519)
..+|.+.++. +|++|-..+.++.|++|+|+ +.-||+=-
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk------~GavVIDv 228 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK------PGAIVIDV 228 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEc
Confidence 1358888887 99999999999999999997 45566543
No 164
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.28 E-value=0.38 Score=53.34 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=28.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
.+..+|+|+|||.||+..|++|.+... .+..=|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 345689999999999999999988632 2455677765
No 165
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.17 E-value=2.4 Score=42.37 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=56.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccC-CccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~-R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
||.|+|+|+.|..+|..|.+. | .+++++|+++--... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999998753 4 368888874211000 0000100000000000112345554 4 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCC
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 450 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 450 (519)
+|++| ++... .-++++++.++..- ++-+|+.+.|...
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 88777 44333 34689999998643 3346677999753
No 166
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.07 E-value=5.5 Score=41.83 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=81.9
Q ss_pred CCCceeec-CC--cchhHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 010044 298 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (519)
Q Consensus 298 ~~~~~FnD-Di--QGTaaV~LAgll~Alk~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (519)
..+.+.|- +. +.+|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-- 168 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-- 168 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 34555552 22 23444566666666553 23468899999999999999999998642
Q ss_pred hhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC-C---CCCCCHHHHH
Q 010044 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG-V---GRTFTKEVIE 431 (519)
Q Consensus 356 ~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~-~---~g~Ft~evv~ 431 (519)
|. +++.+|+.- +. .. .+.+ ...+|.|+++. .|+++=.-- . -+.|.++++.
T Consensus 169 ---G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 169 ---GA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred ---CC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 53 688888641 10 00 1111 22479999987 887763321 1 1467778888
Q ss_pred HHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc-cCCcEEEE
Q 010044 432 AMASFNEKPLILALSNPTSQSECTAEEAYTW-SKGRAIFA 470 (519)
Q Consensus 432 ~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~w-t~G~aifA 470 (519)
.|. +..++.-.|.- .-+.-++.+++ ..|+.-.|
T Consensus 223 ~mk---~gavlIN~aRG---~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 223 HVK---KGAILVNAARG---AVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred cCC---CCcEEEEcCCc---cccCHHHHHHHHHcCCeeEE
Confidence 886 56677655542 33333333333 24654433
No 167
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=86.00 E-value=3.9 Score=42.15 Aligned_cols=93 Identities=14% Similarity=0.268 Sum_probs=51.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (519)
.||.|+|+|..|-+|+.-|.+. | ++ .++|+++|+. . +........|--.. ..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~----~---e~~~~l~~~~g~~~--~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS----E---EKRAALAAEYGVVT--TTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC----H---HHHHHHHHHcCCcc--cCcHHHHHhh-
Confidence 5899999999999999888764 4 32 3678877763 1 11222333331111 2345555554
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
+|+++ ++-.| ..=+++++.+....+..+|..+.
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISia 95 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIA 95 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEe
Confidence 55555 44334 22234555554334445555444
No 168
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.92 E-value=0.68 Score=44.93 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=52.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cC-CCCC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HE-PVNN 402 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~-~~~~ 402 (519)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|+. +.|... .+ ....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999875 75 7999999973 2222 2332 122221 11 1235
Q ss_pred HHHHhcccCCcEEEecc
Q 010044 403 LLDAVKVIKPTILIGSS 419 (519)
Q Consensus 403 L~eav~~vkptvLIG~S 419 (519)
+.+.++.+.|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888888898876544
No 169
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.87 E-value=1.9 Score=44.37 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-cc---CCCCC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EH---EPVNN 402 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~---~~~~~ 402 (519)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-..+ ++. | -++. +. ....-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~sN----lnR-Q-~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVTN----TNR-Q-IHALRDNVGLAKAEV 88 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecccc----ccc-c-cccChhhcChHHHHH
Confidence 468899999999999999999999875 65 789999987443322 432 1 1221 10 11124
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 010044 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (519)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (519)
+.+.+..+.|++-|-.- ...+++|-+...-...-.=||-+.-|+.++
T Consensus 89 ~~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 89 MAERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 66666777777755432 224555544444321223456666666533
No 170
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.46 E-value=4.9 Score=43.45 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=59.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 405 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~e 405 (519)
+...||+|+|.|-.|.++|++|.+. |. .+.++|.+-- ....+.-..+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~-----G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKL-----GA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHC-----CC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 4567999999999999999998753 63 5778886421 01111000111100 00011234
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCC
Q 010044 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGS 473 (519)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ | .+| -++++.+.+.|--|||
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~---s----~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT---S----EME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE---e----chH----HhhhhcCCCEEEEECC
Confidence 344 378766433333 23455555544 346775 2 233 3444445578888998
No 171
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.38 E-value=6.9 Score=40.81 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEE
Q 010044 309 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lv 372 (519)
..|--+++-+|+..|-. +..+.++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666654322 3468899999999999999999999753 65 56777
Q ss_pred ecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 010044 373 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 448 (519)
Q Consensus 373 Ds~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (519)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR- 227 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR- 227 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC-
Confidence 7631 11 11101 11 123579999987 898873321 12578888888886 5667765554
Q ss_pred CCCCCCCHHHHhc--ccCCcEEEEcCCCCCccccCCEEecccCccceeechhhh
Q 010044 449 TSQSECTAEEAYT--WSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 500 (519)
Q Consensus 449 t~~~E~tpe~A~~--wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGig 500 (519)
.++--|+|+. ...|+.--|.--=|++--.... ..--+..|+++-|=++
T Consensus 228 ---G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 228 ---GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred ---ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 5666555542 2456554333222221111100 0012456888888765
No 172
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=85.36 E-value=0.41 Score=57.23 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|++.||+++|||..|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468899999999999999999999886 54110 13689999986
No 173
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.23 E-value=1.1 Score=44.97 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478999999999999999999999875 65 789999987
No 174
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.16 E-value=3.6 Score=43.06 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.=|+-.+.+|+.+++|++|.+. .|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 4567788888899999999999999999764 67777777754 23210 0124444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
.++|.+.+++ +|++|-..+.++.++.|+|+ +..+|+=
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~gavVID 231 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK------EGAVVID 231 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1368888987 99999999999999999997 4556643
No 175
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.15 E-value=12 Score=39.00 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=63.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (519)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998664 32 64 6888887521 0101 0 01247889
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
+++. .|+++=.-. .-++|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8876 888874321 13588999999996 677888777633
No 176
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.04 E-value=3.4 Score=43.27 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+-.-+|-+|++.-|+-.|.+++.++++|+|.+. .|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 344667788888899999999999999999764 57777777754 2211 01235555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.++|.+.+++ +|++|-..+.++.++.|+|+ +..+|+=-.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDvG 237 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDVG 237 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEecC
Confidence 1368888987 99999999999999999997 556776543
No 177
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=85.00 E-value=0.43 Score=52.69 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
+...+.||||+|||.||++.|..|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34566799999999999999999985
No 178
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.98 E-value=1.5 Score=45.42 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=76.8
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 010044 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (519)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvL 415 (519)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.++..-..+-.+.+++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 36899999842111111112333222221111101233567776 9999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEcCCCC
Q 010044 416 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSPF 475 (519)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G--~aifAsGSPf 475 (519)
|=+.+.+ |- +=+++++.+.+++..-+|+-.|||. ++...-+++++.= +-+|++|.--
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt~L 141 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGTVL 141 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccchH
Confidence 8666653 21 1246778888899999999999996 4666666666521 3488887543
No 179
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.64 E-value=15 Score=37.64 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=63.2
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-
Q 010044 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE- 396 (519)
Q Consensus 318 ll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~- 396 (519)
.+.|++..+. ..+++++|.|+|+.|...+.+... .|. ++++.+|+. ++| +.-.++-=|..
T Consensus 158 a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~~----~~~---~~~a~~lGa~~v 218 (343)
T PRK09880 158 AIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADVS----PRS---LSLAREMGADKL 218 (343)
T ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeCC----HHH---HHHHHHcCCcEE
Confidence 3555554433 368899999999888877655433 253 568877753 121 11111110110
Q ss_pred -cCCCCCHHHHhccc-CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 010044 397 -HEPVNNLLDAVKVI-KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 470 (519)
Q Consensus 397 -~~~~~~L~eav~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifA 470 (519)
.....++.+.++.- ++|++|=+++.+ ..-++.++.|+. .-.|.-+..+...++..+.+.+ .++.-|..
T Consensus 219 i~~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~~---~G~iv~~G~~~~~~~~~~~~~~--~k~~~i~g 288 (343)
T PRK09880 219 VNPQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTRA---KGVMVQVGMGGAPPEFPMMTLI--VKEISLKG 288 (343)
T ss_pred ecCCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhhc---CCEEEEEccCCCCCccCHHHHH--hCCcEEEE
Confidence 00112344444322 378888877643 223456666652 2233333333333556555543 23444443
No 180
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.56 E-value=4.8 Score=41.69 Aligned_cols=121 Identities=24% Similarity=0.367 Sum_probs=74.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc----cc--CCC---C
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EPV---N 401 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~----~~--~~~---~ 401 (519)
.||.|+|| |..|..+|..++.. |+ ...++++|++--+ +.+..++.++.+ .. ..+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-----g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-----DV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 38999998 99999999988753 54 2479999985211 112222212111 00 111 2
Q ss_pred CHHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CC
Q 010044 402 NLLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KG 465 (519)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt--~G 465 (519)
+ .+.+++ .|++|=+.+.+ | .+-+++++.|.+++...+|+--+||. .+..-.+++++ ..
T Consensus 66 d-~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~ 139 (309)
T cd05294 66 D-LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDK 139 (309)
T ss_pred C-HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCH
Confidence 4 455776 89888665532 1 23567788888899999999999996 33334455443 12
Q ss_pred cEEEEcCC
Q 010044 466 RAIFASGS 473 (519)
Q Consensus 466 ~aifAsGS 473 (519)
+-+|++|.
T Consensus 140 ~~viG~gt 147 (309)
T cd05294 140 NRVFGLGT 147 (309)
T ss_pred HHEeeccc
Confidence 44788875
No 181
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=84.40 E-value=9.9 Score=39.52 Aligned_cols=135 Identities=13% Similarity=0.202 Sum_probs=87.2
Q ss_pred CCCceeecCC---cchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 010044 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (519)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 350 (519)
..|.|.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 3555555321 235556677777666532 2468999999999999999999998
Q ss_pred HHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCC
Q 010044 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFT 426 (519)
Q Consensus 351 ~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft 426 (519)
. ++ |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=.- ..-+.|+
T Consensus 165 ~-~f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 Q-AF----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred h-hc----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 5 33 64 6888888431 10 0 011 12479999987 89887431 2236999
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEE
Q 010044 427 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 468 (519)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~w--t~G~ai 468 (519)
++.++.|. +..++.=.|. .++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 99999997 6777776554 55555544422 356654
No 182
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=84.25 E-value=1.4 Score=40.58 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
+|||+|+|.||+..|..+.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999983 23 4788886643
No 183
>PRK07680 late competence protein ComER; Validated
Probab=84.13 E-value=2.4 Score=42.51 Aligned_cols=98 Identities=12% Similarity=0.248 Sum_probs=57.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkp 412 (519)
+|.|+|+|..|..+|..+.+. |.- ...+++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999998753 420 12467877763 11 1111111110 00112466777765 7
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010044 413 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (519)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (519)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7765 33333 3467777777643 34568888888763
No 184
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.10 E-value=7.3 Score=40.59 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (519)
..|.++++.|+|.|..|..+|+++. ++ |+ +++.+|+.+ ..+ . + ...+|.|+
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~-~f----gm-------~V~~~~~~~-----~~~-------~-~----~~~~l~el 194 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAE-AF----GM-------RVLIGQLPG-----RPA-------R-P----DRLPLDEL 194 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-hC----CC-------EEEEECCCC-----Ccc-------c-c----cccCHHHH
Confidence 3688999999999999999999985 32 64 577777642 101 0 0 12379999
Q ss_pred hcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc--ccCCcEEEEcCCCCC--cc
Q 010044 407 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--PF 478 (519)
Q Consensus 407 v~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~--wt~G~aifAsGSPf~--pv 478 (519)
++. .|+++=. ....|.|+++.+..|. +..++.=.|. .++--|+|+- ..+|+.--|.=-=|+ |.
T Consensus 195 l~~--sDiv~l~lPlt~~T~~li~~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 195 LPQ--VDALTLHCPLTEHTRHLIGARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred HHh--CCEEEECCCCChHHhcCcCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 987 8998832 1224799999999997 6677776554 4455444442 135665433221121 11
Q ss_pred ccCCEEecccCccceeechhhh
Q 010044 479 EYNGKVFVPGQANNAYIFPGFG 500 (519)
Q Consensus 479 ~~~G~~~~p~Q~NN~~iFPGig 500 (519)
. .+....--+..|+++-|=++
T Consensus 266 ~-~~~pl~~~~~pnvilTPHia 286 (317)
T PRK06487 266 V-NGNPLLAPDIPRLIVTPHSA 286 (317)
T ss_pred C-CCCchhhcCCCCEEECCccc
Confidence 1 11111100356899999776
No 185
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.74 E-value=2.5 Score=42.51 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.|++.+++..+...+..+++|+|+|.+|.+++..+.+. | .+++++|+.
T Consensus 101 ~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~-----g-------~~v~v~~R~ 149 (270)
T TIGR00507 101 GIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKA-----D-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 345666666545556678999999998888888877642 4 368888863
No 186
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.64 E-value=4.5 Score=42.11 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch
Q 010044 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (519)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~ 388 (519)
=.-+|-.|++.=++-.+-+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|.|+ +
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~-------T----- 190 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK-------T----- 190 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------C-----
Confidence 3567778888899999999999999999976 467788887754 242 34555442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 389 ~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 191 ------------~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 191 ------------RNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 358888887 99999999999999999997
No 187
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.43 E-value=2.3 Score=43.76 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=75.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC-CccccCCccCCchhchhhcccc-CCCCCHHHHhcccC
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~fa~~~-~~~~~L~eav~~vk 411 (519)
|.|+|||..|..+|-.++. .|+ ...+.++|.+ .++..-.. +|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~~-DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDAL-DLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHH-hHHHhccccCCCeEEECCC-HHHhCC--
Confidence 4789999999999977664 365 2579999973 22111111 2443333221110 00134 456776
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcCCC
Q 010044 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 474 (519)
Q Consensus 412 ptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt--~G~aifAsGSP 474 (519)
.|++|=+.+.+ |- +=+++++.+.+++..-+|+-.|||. ++...-+++++ +-+-+|++|.-
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt~ 142 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGTL 142 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCCc
Confidence 88887555443 21 1245777888899999999999995 56666666653 23458888643
No 188
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.36 E-value=1.5 Score=39.56 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=43.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc--c-c-CCCCCHHHHhc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-H-EPVNNLLDAVK 408 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~--~-~-~~~~~L~eav~ 408 (519)
||+++|+|..|..+|+.|+.. |+ ++|.++|.+-+ ..+ +|..+ .|.. + . +....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~~---nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-ELS---NLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Ccc---hhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999875 65 78999998733 221 23222 2221 1 1 11134666666
Q ss_pred ccCCcEEEec
Q 010044 409 VIKPTILIGS 418 (519)
Q Consensus 409 ~vkptvLIG~ 418 (519)
...|.+=|-.
T Consensus 64 ~~~p~v~i~~ 73 (143)
T cd01483 64 ELNPGVNVTA 73 (143)
T ss_pred HHCCCcEEEE
Confidence 6667665543
No 189
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.08 E-value=6.1 Score=40.32 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=56.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhccc-
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 410 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~v- 410 (519)
||.|+|.|..|..+|+.|... | .+++++|+.. .+ .. .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999763 5 3577777741 11 11 12211 11235777877765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (519)
++|++|=+-. .....+++++.+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3676653322 33456666665543 34567888887643
No 190
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.94 E-value=4.8 Score=41.90 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+=.-+|-.|++.=++-.|-+|++.++|++|.+. .|--+|.||.. .|. .+.+|+++ +
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~-------T---- 192 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF-------T---- 192 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-------C----
Confidence 335678888999999999999999999999764 67888887754 242 35555542 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 193 -------------~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 193 -------------TDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 257777887 99999999999999999997
No 191
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.85 E-value=11 Score=37.43 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~ 395 (519)
+..+.|++..+. ..+.+++|+|+|+.|...+.+.. + .|. ++++++|+. ..| +...++.=|.
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak-~----~G~------~~Vi~~~~~----~~r---~~~a~~~Ga~ 167 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAA-A----AGA------ARVVAADPS----PDR---RELALSFGAT 167 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CEEEEECCC----HHH---HHHHHHcCCc
Confidence 334556655544 37889999999988777655543 2 363 568877642 111 1111100010
Q ss_pred ccCCCCCHHHHhc----ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEc
Q 010044 396 EHEPVNNLLDAVK----VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 471 (519)
Q Consensus 396 ~~~~~~~L~eav~----~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAs 471 (519)
..-......+.++ .-.+|++|-+++.+..+ ++.++.+.. .-+=+++.+..|....++.+.+.+. +..-|..|
T Consensus 168 ~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~-~~~~~~l~~-~G~iv~~G~~~~~~~~~i~~~~~~~--~~~~i~g~ 243 (280)
T TIGR03366 168 ALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV-RACLESLDV-GGTAVLAGSVFPGGPVALDPEQVVR--RWLTIRGV 243 (280)
T ss_pred EecCchhhHHHHHHHhCCCCCCEEEECCCChHHH-HHHHHHhcC-CCEEEEeccCCCCCceeeCHHHHHh--CCcEEEec
Confidence 0000011222222 23589999888754333 234554431 2222334432222234666766543 34445544
No 192
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.84 E-value=1.4 Score=44.22 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=62.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhcc----
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH---- 395 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~---- 395 (519)
+|++.+|+++|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+.- +++-..|..-+.
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~V-~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDVV-CVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-CchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 57889999999999999999999875 75 68999998732 22110 001111111111
Q ss_pred c-cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 396 E-HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 396 ~-~~~---------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
. .+. + .++.+.+. -++|++|-+.... -.+-.+-..+..+..|+|.+++
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~~l~~-~~~D~VvdaiD~~--~~k~~L~~~c~~~~ip~I~s~g 135 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSEDLLG-GDPDFVVDAIDSI--RAKVALIAYCRKRKIPVISSMG 135 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHHHHhc-CCCCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEEeC
Confidence 0 010 1 13344442 2588888775422 2344456667777899999886
No 193
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.65 E-value=2.5 Score=46.47 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
.|++.+++..+.++++.+++|+|+|.+|.+++..+.+. |. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~-----G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARA-----GA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHC-----CC-------EEEEEeC
Confidence 47888888888899999999999998888888877652 52 5777776
No 194
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.56 E-value=1.3 Score=46.72 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhcc---
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~--- 395 (519)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-|.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT-VDLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcccccccCcccChhHCCChHHHHHHHHH
Confidence 468899999999999999999999765 75 7899999873 222110 001111111111
Q ss_pred -c-cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 396 -E-HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 396 -~-~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
. .+ .. .++.+.++. .|++|-++.. .=+..++..++.....|.|++-+
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEE
Confidence 0 00 11 134455654 7888776642 33556677777777788888754
No 195
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.49 E-value=3.1 Score=42.64 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999999764 4 456777764
No 196
>PLN03139 formate dehydrogenase; Provisional
Probab=82.48 E-value=10 Score=40.98 Aligned_cols=145 Identities=15% Similarity=0.055 Sum_probs=86.2
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (519)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... ..+ ..+. . ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~----~~~---~~~~-~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM----DPE---LEKE-T--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc----chh---hHhh-c--CceecCCHHH
Confidence 4569999999999999999999999642 54 5777887532 000 0110 0 0112358999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEEcCCCCCccc
Q 010044 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 479 (519)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~-~w-t~G~aifAsGSPf~pv~ 479 (519)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+ ++ ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9987 898873321 12689999999996 5667776554 445444443 22 35666555544332211
Q ss_pred cCCEEecccCccceeechhhhHH
Q 010044 480 YNGKVFVPGQANNAYIFPGFGLG 502 (519)
Q Consensus 480 ~~G~~~~p~Q~NN~~iFPGiglG 502 (519)
... ...--+..|+.+-|=++-.
T Consensus 323 lp~-d~pL~~~pNvilTPHiag~ 344 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHISGT 344 (386)
T ss_pred CCC-CChhhcCCCeEEccccccc
Confidence 100 0001234688888877643
No 197
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.31 E-value=10 Score=42.19 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=95.9
Q ss_pred CCCceeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 010044 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (519)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (519)
..++|.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3566666321 22455566667766553 24568899999999999999999998643
Q ss_pred hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHH
Q 010044 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 432 (519)
Q Consensus 357 ~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~ 432 (519)
|+ +++.+|+.. .+ +... .+ ... ..+|.|+++. .|+++=.-. .-++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~~~~----~~--g~~-~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-ERAA----QL--GVE-LVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-hHHH----hc--CCE-EEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 688888742 11 0000 00 001 1278888886 888764321 136888898888
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEecccCccceeechhhhHH
Q 010044 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLG 502 (519)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG 502 (519)
|. +..++.=.|.-..--|..--+|++ .|+.-.|.=-=|++--..... --+..|+.+-|=+|-.
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~ 282 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGAS 282 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccc
Confidence 86 567777766643222333333433 465533321111100000111 1234578888876643
No 198
>PRK06153 hypothetical protein; Provisional
Probab=82.26 E-value=2.3 Score=46.10 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 578899999999999999999999875 65 789999987
No 199
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.09 E-value=5.8 Score=41.28 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.=++-.+-+++.++++++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567788899999999999999999999764 57777777754 232 35555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.++|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 200
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=82.08 E-value=4 Score=43.04 Aligned_cols=103 Identities=21% Similarity=0.378 Sum_probs=65.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC-CccccCCccCCchhchhhccccCCC---CCHHHHh
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAV 407 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~-GLi~~~R~~~l~~~k~~fa~~~~~~---~~L~eav 407 (519)
.||.++|||..|...|-+|+. .++. +.+.|+|-. +...-...| |.+.. .+....... .+ -+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999988843 2542 479999987 221111112 32221 121110111 23 4557
Q ss_pred cccCCcEEEeccCC---CC-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
++ +|+.|=+.+. +| -+-+++.+++++++.+.||+-.|||.
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 76 8887744433 34 14467888999999999999999998
No 201
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.05 E-value=6.9 Score=39.44 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=26.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhhhcCcEEEEec
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDS 374 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G-~~~eeA~~~i~lvDs 374 (519)
..||.|+|+|..|.+||+.+... | +. ..+++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~~----~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVVK----GEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECC
Confidence 46899999999999999998753 4 11 245777765
No 202
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.02 E-value=4.9 Score=43.31 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.-|+..+.+++.+++||+|-+. .|.-+|.||.+ .|. .+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 4556777888899999999999999999754 57777777754 242 35555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
.++|.+.+++ +|++|-..+.++.++.|+|+ +.-||.=
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK------~GAvVID 301 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK------PGAVVID 301 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC------CCCEEEe
Confidence 1468888887 99999999999999999997 4556643
No 203
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=82.02 E-value=1.4 Score=50.67 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
.+|++.||+++|||.-|..+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999876 75 79999998643
No 204
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.99 E-value=5.4 Score=41.58 Aligned_cols=83 Identities=27% Similarity=0.357 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.=++-.|-+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+ +
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------T------ 189 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------T------ 189 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-------C------
Confidence 456778888889999999999999999975 468888888754 242 35555442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (519)
.+|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 190 -----------~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 190 -----------QDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 258888887 99999999999999999997
No 205
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.97 E-value=17 Score=39.42 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=102.3
Q ss_pred cCCCceeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 010044 297 GTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (519)
Q Consensus 297 r~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (519)
+..|+|+|--- +.+|=-+++.+|+.+|- .|..|.+.++.|+|.|..|..+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 46899999532 23455678888887663 24568999999999999999999988642
Q ss_pred hhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 010044 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 431 (519)
Q Consensus 356 ~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~ 431 (519)
|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.-- .-+.|+++.+.
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 64 678888631 1 0000 01 123479999987 888773311 12589999999
Q ss_pred HHHcCCCCcEEEEcCCCCCCCCCCHHHHhc-c-cCCcEEEEcCC---CCCccccCCEEe-cccCccceeechhhhHHH
Q 010044 432 AMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGS---PFDPFEYNGKVF-VPGQANNAYIFPGFGLGL 503 (519)
Q Consensus 432 ~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~-w-t~G~aifAsGS---Pf~pv~~~G~~~-~p~Q~NN~~iFPGiglG~ 503 (519)
.|. +..++.-.|. .++--|+|+. . ..|+ |.+.|. +.+|..-+.... .--+..|+++-|=+|-..
T Consensus 228 ~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t 297 (409)
T PRK11790 228 LMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGST 297 (409)
T ss_pred cCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCH
Confidence 996 5667776654 4444444431 1 3465 433321 112221110000 112456899999776433
No 206
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=81.83 E-value=5.3 Score=44.00 Aligned_cols=136 Identities=11% Similarity=-0.010 Sum_probs=80.3
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHh--hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHh
Q 010044 331 EHRFLFLGA-GEAGTGIAELIALEISK--QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (519)
Q Consensus 331 d~riv~~GA-GsAg~GIA~ll~~~~~~--~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (519)
=.||.|+|| |..|..+|-.|+..-+- .+|+ -..++++|.+-=...+-.-+|.+-.-++-++..-..+-.+.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF 174 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh
Confidence 379999999 99999999988753000 0133 247888987422211111113332223322111012345667
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 010044 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 470 (519)
Q Consensus 408 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIFaLSNPt~~~E~tpe~A~~wt~--G~aifA 470 (519)
++ .|++|=+.+.+ |- +=+++.+.+.+ .+..-||+-.|||- .++.--+++++. -.-+|.
T Consensus 175 kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViG 249 (444)
T PLN00112 175 QD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFH 249 (444)
T ss_pred Cc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEE
Confidence 76 89988666653 21 12467778888 58999999999995 455555555552 245777
Q ss_pred cCCCCC
Q 010044 471 SGSPFD 476 (519)
Q Consensus 471 sGSPf~ 476 (519)
||.=.+
T Consensus 250 tgT~LD 255 (444)
T PLN00112 250 ALTRLD 255 (444)
T ss_pred eeccHH
Confidence 775444
No 207
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=81.79 E-value=9 Score=40.02 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=67.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc---CCCCCHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~---~~~~~L~ea 406 (519)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999887766555432 1 2 3788988873 222 222222222211 224689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010044 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (519)
Q Consensus 407 v~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~ 458 (519)
+++ .||+|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 99999765 333478888874 566788887544 368999864
No 208
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.70 E-value=2.1 Score=44.77 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=54.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc--cccCCc--cCCchhchhhccccCCCCCHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRK--DSLQHFKKPWAHEHEPVNNLLDA 406 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL--i~~~R~--~~l~~~k~~fa~~~~~~~~L~ea 406 (519)
..||.|+|||+-|..+|..+.+. | . -.+|..|..-. |.+.+. +.+.. ...+.....-..++.++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHH
Confidence 37899999999999999998753 3 1 23554332210 001100 00110 00000000112467777
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010044 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (519)
++. +|++| ++... -+.+++++.++.+ .++.+|..++|-..
T Consensus 75 ~~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 75 ANC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred Hhc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 765 66554 33322 4678888888753 33445667777553
No 209
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.61 E-value=6.4 Score=41.11 Aligned_cols=98 Identities=24% Similarity=0.388 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc
Q 010044 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~ 387 (519)
+=.-+|-.|++.-++-.|.+|+.+++||+|-+. .|.-+|.||.+ .|.+. ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 334667888888999999999999999999764 67778777754 22110 1134444331
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 388 ~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.++|.+.+++ +|++|-..+.++.+++|+|+ +.-||+=-.
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVIDvG 229 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVDVG 229 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEec
Confidence 1368888887 99999999999999999997 556665433
No 210
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.24 E-value=6.2 Score=41.36 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.=++-.+-+++.++++|+|.+. -|.-+|.||.+. +.. ...-+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 3467788888899999999999999999764 577777777541 110 00124444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.++|.+.+++ +|++|-..|.++.++.|+|+ +.-||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1368888987 99999999999999999997 566775444
No 211
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.95 E-value=12 Score=41.85 Aligned_cols=143 Identities=20% Similarity=0.159 Sum_probs=83.0
Q ss_pred CCCceeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 010044 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (519)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (519)
..++|.|--- +.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3555555321 23455566666665542 25578999999999999999999998642
Q ss_pred hcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 010044 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (519)
Q Consensus 357 ~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~ 432 (519)
|+ +++.+|+.. .... . ..+ ......+|.|+++. .|+++=.- ..-+.|+++.++.
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~----~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---A----EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---H----Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 54 588888631 1100 0 000 01112468888876 78776221 1235788888888
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 010044 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 470 (519)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifA 470 (519)
|. +..++.=.|.-.---|-.--+|++ .|+.-.|
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gA 251 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAA 251 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEE
Confidence 86 566777666543222222233333 4554433
No 212
>PRK07340 ornithine cyclodeaminase; Validated
Probab=80.70 E-value=12 Score=38.68 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=66.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCC--CCCHHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~--~~~L~ea 406 (519)
....+++|+|+|..|...++.+... .+. ++|+++|+. .++ ...+...+.....+ ..++.++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999999998888753 243 578888874 222 22222222211111 3579999
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 010044 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (519)
Q Consensus 407 v~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (519)
+++ .|++|-++... .+|.. .++ +.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999876543 46655 332 455677776422 4689987643
No 213
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.47 E-value=3.8 Score=42.02 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=58.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCc-----hhchhhccc-cCCCCCHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 405 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~-----~~k~~fa~~-~~~~~~L~e 405 (519)
.||.|+|+|..|..+|..+.++ | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999999764 4 368888874211000000010 000000000 0001234 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCC
Q 010044 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQS 452 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~ 452 (519)
+++. +|++|=+... -..+++++.+... .+..+|..+.|.....
T Consensus 70 ~~~~--~D~vil~vk~--~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALAT--ADLVLVTVKS--AATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccC--CCEEEEEecC--cchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 5553 8888844432 2357888888754 4557888888976433
No 214
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.38 E-value=11 Score=38.22 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999998753 5 368888864
No 215
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=79.79 E-value=17 Score=38.11 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHH
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~e 405 (519)
|..|.++++.|+|.|..|..+|+.+..++ |+ ++...|+.. . . .....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~--~---~~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H--K---EAEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c--h---hhHHhc---CcEecCHHH
Confidence 45689999999999999999999975232 54 455555421 0 0 000011 112348999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh-cc-cCCcEEEE
Q 010044 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFA 470 (519)
Q Consensus 406 av~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~-~w-t~G~aifA 470 (519)
+++. .|+++=.- ...+.|+++.++.|. +..++.=.|. .++--|+|+ ++ .+|+.-.|
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gA 258 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAA 258 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 9987 89876321 113689999999996 5667775554 555555443 22 45655433
No 216
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=79.67 E-value=1.5 Score=48.14 Aligned_cols=130 Identities=16% Similarity=0.304 Sum_probs=82.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCC-----CCCH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 403 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~-----~~~L 403 (519)
+..||+|+||||.. ..+++...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 4667777666666665 3689999973 44432111122233332 122 2589
Q ss_pred HHHhcccCCcEEEec--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 010044 404 LDAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 404 ~eav~~vkptvLIG~--------------------------S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 449 (519)
.||+++ +|-+|=. .++||.|. -|+++.|-+.++..-++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999987 6665522 23334333 38899999999999999999998
Q ss_pred CCCCCCHHHHhcccCC-cEEEEcCCC
Q 010044 450 SQSECTAEEAYTWSKG-RAIFASGSP 474 (519)
Q Consensus 450 ~~~E~tpe~A~~wt~G-~aifAsGSP 474 (519)
+++|- -+++|+.. +.|=-.=+|
T Consensus 150 --~~vTe-Av~r~~~~~K~VGlCh~~ 172 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIVGLCHGP 172 (442)
T ss_pred --HHHHH-HHHHhCCCCcEEeeCCch
Confidence 77764 44565654 554333333
No 217
>PRK06932 glycerate dehydrogenase; Provisional
Probab=79.67 E-value=20 Score=37.40 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=83.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (519)
..|.++++.|+|-|..|-.+|+++.. + |+ +++.+|+.. .... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-f----g~-------~V~~~~~~~------~~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-L----GM-------KVLYAEHKG------ASVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-C----CC-------EEEEECCCc------cccc---c-------cccCCHHHH
Confidence 46889999999999999999998843 2 64 466666531 0000 0 113479999
Q ss_pred hcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc--cCCcEEEEcCCCCC--cc
Q 010044 407 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSPFD--PF 478 (519)
Q Consensus 407 v~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~w--t~G~aifAsGSPf~--pv 478 (519)
++. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++--|+|+.. .+|+.--|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 997 9998842 1224799999999996 6777776665 45554544421 35655434322221 11
Q ss_pred ccCCEEec--ccCccceeechhhhHH
Q 010044 479 EYNGKVFV--PGQANNAYIFPGFGLG 502 (519)
Q Consensus 479 ~~~G~~~~--p~Q~NN~~iFPGiglG 502 (519)
..+. ... -.+..|+++-|=++-.
T Consensus 266 ~~~~-pl~~~~~~~pnvilTPHia~~ 290 (314)
T PRK06932 266 EKDN-PLIQAAKRLPNLLITPHIAWA 290 (314)
T ss_pred CCCC-hhhHhhcCCCCEEECCccccC
Confidence 1111 010 0146789999977643
No 218
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=79.57 E-value=2.1 Score=39.70 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=21.1
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+|+|||.||+..|..|.+. |+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-----g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-----GI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-----T---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhC-----CC------CcEEEEeCC
Confidence 6899999999999888653 65 348899987
No 219
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=79.33 E-value=1.7 Score=46.51 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhccc--
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~~-- 396 (519)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-|+.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDV-VDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-ecCcccccccccChhcCCChHHHHHHHHH
Confidence 568899999999999999999999875 75 6899999762 222110 0111112111110
Q ss_pred ------------cCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 397 ------------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 397 ------------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
...+ .++.+.++. .|++|-++.. .=++-++-.++.....|.|++-+
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0111 134555654 7888876542 22445566677667788887543
No 220
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.03 E-value=8.2 Score=40.48 Aligned_cols=91 Identities=18% Similarity=0.314 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-.|++.=++-.|.+++.+++||+|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3567788888899999999999999999764 67888888754 243 34555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (519)
.++|.+.+++ +|++|-..+.++.|+.++|+ +..||+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVDV 229 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1368888887 99999999999999999997 45566543
No 221
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.82 E-value=9.9 Score=46.08 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCCC---------cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc------------Cc---EE
Q 010044 315 LAGVVAALKLIGGT---------LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---IC 370 (519)
Q Consensus 315 LAgll~Alk~~g~~---------l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~------------~~---i~ 370 (519)
++.+.+|++..|.. +.-.+|||.|+|..|.|.++++...-.+ =++.++-+ ++ +|
T Consensus 178 ~~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y 255 (1042)
T PLN02819 178 LAAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVY 255 (1042)
T ss_pred HHHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceee
Confidence 34456666655433 3358999999999999999988654111 02222211 11 22
Q ss_pred E--EecCCccccCCccCCchhchhhccccCCC-CCHH-HHhcccCCcEEEecc----CCCCCCCHH-HHHHHHc
Q 010044 371 L--VDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 435 (519)
Q Consensus 371 l--vDs~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~-eav~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma~ 435 (519)
- +.+.-.+.+...+.-=+.+..|+++ +.. ..+. +++.. .|+|||.= ..|.++|+| +++.|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~f~~~~y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 256 GCVVTSQDMVEHKDPSKQFDKADYYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eeecChHHHhhccCCccccchhhhccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 1 1111111110000000112223332 333 3454 68877 99999984 235689999 8888874
No 222
>PRK06823 ornithine cyclodeaminase; Validated
Probab=78.77 E-value=14 Score=38.71 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=68.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~ea 406 (519)
.-.++.++|+|.-+...++.+... + . -++|++.|+. .++ ...+...+.+. .....+..++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~--~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--T--D------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999998888877653 1 2 3788888773 222 22222222111 1123689999
Q ss_pred hcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 010044 407 VKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (519)
Q Consensus 407 v~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (519)
++. +||++-+++. ..+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 9999976533 3488888886 455677776432 3689998654
No 223
>PRK07411 hypothetical protein; Validated
Probab=78.68 E-value=1.8 Score=46.33 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=63.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc--------cCCchhchhhccc--
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~--------~~l~~~k~~fa~~-- 396 (519)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-|..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 568899999999999999999999876 65 789999986 2222210 0111111111110
Q ss_pred ---c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 010044 397 ---H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (519)
Q Consensus 397 ---~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (519)
. ..+ .+..+.++. .|++|-++.. .=+..+|..++.....|.|++-
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~ 160 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYGS 160 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 0 011 133445554 7777776542 2356677777776778887653
No 224
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=78.62 E-value=2.7 Score=41.55 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
-+|+|+|||.||+..|..|.+. |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999999764 65 48888887543
No 225
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.41 E-value=48 Score=34.07 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
..++++|+|||..|+..+.++...+ |- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 4789999999988887776665431 31 46887776
No 226
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.30 E-value=11 Score=38.57 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=56.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhcccC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~vk 411 (519)
||.|+|.|..|..+|+.+... |. +++++|++. ++ ... ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999999753 43 577777631 11 111 1111 122357888877643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 010044 412 -PTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (519)
Q Consensus 412 -ptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (519)
+|++|=+ .......+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 5666532 2233366677666543 34567888887643
No 227
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=78.00 E-value=8.2 Score=40.58 Aligned_cols=130 Identities=19% Similarity=0.344 Sum_probs=79.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc-cccCCccCCchhchhhccccC--CCCCH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL-IVSSRKDSLQHFKKPWAHEHE--PVNNL 403 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL-i~~~R~~~l~~~k~~fa~~~~--~~~~L 403 (519)
++.+..||.++|+|..|+++|-.|+.. |++ +++.++|-+== +--..+| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456678999999999999999988763 663 78899996421 1111122 43 3345554321 11233
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC-----
Q 010044 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK----- 464 (519)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~----- 464 (519)
... + ..++.|=+.+.... +=+.+|.++.++.+.-|++-.|||. |.++|.-
T Consensus 84 ~~s-a--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 SVS-A--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred ccc-C--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 221 1 24555544433221 2246777888999999999999997 6555421
Q ss_pred --CcEEEEcCCCCCccc
Q 010044 465 --GRAIFASGSPFDPFE 479 (519)
Q Consensus 465 --G~aifAsGSPf~pv~ 479 (519)
-..+|.||.-.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 134677776655544
No 228
>PLN02527 aspartate carbamoyltransferase
Probab=77.86 E-value=65 Score=33.75 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceee--cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010044 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (519)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 339 (519)
+.+.+..+. +| .++ |-+-.+......+ +.+| .++||.| |+...=-+=+||=++.-.+..| ++++.||+++|.
T Consensus 86 ~~Dta~vls-~y-~D~-iviR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD 159 (306)
T PLN02527 86 LEDTIRTVE-GY-SDI-IVLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGD 159 (306)
T ss_pred HHHHHHHHH-Hh-CcE-EEEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECC
Confidence 344444433 45 333 3344454444333 3444 4789999 4343444556777777666665 599999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcccc-CC---CCCHHHHhcccCCcEE
Q 010044 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP---VNNLLDAVKVIKPTIL 415 (519)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~-~~---~~~L~eav~~vkptvL 415 (519)
+.=+ -+++-++.++.+-.|+ ++.++-.+|+- +++....++++. .. ..++.|++++ +||+
T Consensus 160 ~~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 222 (306)
T PLN02527 160 LANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVL 222 (306)
T ss_pred CCCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEE
Confidence 7422 2455544444332243 57777777661 122222233321 11 2689999998 9999
Q ss_pred EeccCC
Q 010044 416 IGSSGV 421 (519)
Q Consensus 416 IG~S~~ 421 (519)
.-.+.+
T Consensus 223 yt~~~q 228 (306)
T PLN02527 223 YQTRIQ 228 (306)
T ss_pred EECCcc
Confidence 987654
No 229
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=77.86 E-value=9.7 Score=39.48 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=67.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~e 405 (519)
.-.++.|+|+|.-|..-++.++.. .. .++|.+.|+. .++ ...+.+.+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YN------PKRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 468999999999988888777653 23 3678877773 222 33333333321 122468999
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 010044 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (519)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~ 458 (519)
+++. +||++-+++. ..+|..++++. .--|-++ |+--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHH
Confidence 9987 9999976533 34788888863 2345554 3323578999874
No 230
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=77.69 E-value=8.1 Score=41.38 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh
Q 010044 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (519)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~ 389 (519)
.-+|-+|++.=|+-.|-+++.+++||+|-+. .|.-+|.||.. .|. .+.+|.++ +
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 4567788888889999999999999999754 67777777754 243 34455442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 390 k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
++|.+.+++ +|++|-..+.++.|+.|+|+ +.-||.=
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk------~GavVID 284 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK------PGAVVID 284 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 357888887 99999999999999999997 4556643
No 231
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.61 E-value=2.2 Score=44.33 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999875 75 789999987
No 232
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.47 E-value=4.5 Score=32.94 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~ 379 (519)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999999653 4 6889999887766
No 233
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=77.39 E-value=4.6 Score=44.63 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=62.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---ccCCCCCHHHHhc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---~~~~~~~L~eav~ 408 (519)
.+|-|+|.|..|.++|..|.+. |. ++++.|++ .++ .++..+.-.. ......++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3689999999999999999763 53 57888873 222 1111111000 0113468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 010044 409 VI-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (519)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (519)
.. +|+++| +.-.++...+++++.+.. ..+..||.=+||=.
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 64 588555 333455677888877664 35678899899843
No 234
>PRK06270 homoserine dehydrogenase; Provisional
Probab=77.35 E-value=19 Score=37.94 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=64.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHhhcCCChhhhcCcEEEEecCCccccCCccCCchh-chhhccccC---------
Q 010044 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAHEHE--------- 398 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~---~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~-k~~fa~~~~--------- 398 (519)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+...+. ++.. -..|+....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998653 22222331 123457899999888763 3221 122222111
Q ss_pred CCCCHHHHhcccCCcEEEeccCCC---CCCCHHHH-HHHHcCCCCcEEE
Q 010044 399 PVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVI-EAMASFNEKPLIL 443 (519)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~---g~Ft~evv-~~Ma~~~erPIIF 443 (519)
...++.|+++...+||+|=++... +-...+++ +++. +.++||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 123889999887899999877531 22234554 4444 3678886
No 235
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=77.17 E-value=13 Score=37.71 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999999764 5 367888863
No 236
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=76.98 E-value=5.9 Score=35.53 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=49.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (519)
.||+++|+ |-.|..|++.+.+. .|+ +=...+|++.--..+. ++.+.-........-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999999763 243 3466788876111111 1111100000000112567777776
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
+||+|=+|.+. ...+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 78887777432 333445444443 4555554
No 237
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=76.83 E-value=4.9 Score=44.62 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
+||-|+|||..|.|||..++.+ |. .++++|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-----G~-------~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-----GH-------TVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5799999999999999998764 54 4667774
No 238
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.54 E-value=3.6 Score=43.28 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+..||||+|+|.||+..|+.|.+. |. .-+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999999763 32 2367777765
No 239
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=76.46 E-value=9.2 Score=39.95 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=85.2
Q ss_pred eeeeeecCCCccHHHHHHHHc--CCCceeec--------CCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHH
Q 010044 277 VLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTG 345 (519)
Q Consensus 277 ~lIqfEDf~~~~af~iL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~G 345 (519)
.+|||==...-+...+|+.-. +++==||- ...+--.+|-+|++--++-.+.+|.+.++||+|.+. -|--
T Consensus 92 IlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkP 171 (283)
T COG0190 92 ILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKP 171 (283)
T ss_pred EEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHH
Confidence 566665555555556665542 22211111 133455778899999999999999999999999876 4677
Q ss_pred HHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCC
Q 010044 346 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTF 425 (519)
Q Consensus 346 IA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~~g~F 425 (519)
+|.+|+.. +. -+-+|+|+ .++|.+.+++ +|++|-.-+.++.|
T Consensus 172 la~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~i 213 (283)
T COG0190 172 LALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHFI 213 (283)
T ss_pred HHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcccc
Confidence 77777652 32 34445442 1468888887 99999999999999
Q ss_pred CHHHHHHHHcCCCCcEEE
Q 010044 426 TKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 426 t~evv~~Ma~~~erPIIF 443 (519)
+.|||+ +..+|+
T Consensus 214 ~~d~vk------~gavVI 225 (283)
T COG0190 214 KADMVK------PGAVVI 225 (283)
T ss_pred cccccc------CCCEEE
Confidence 999997 455665
No 240
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.41 E-value=6.3 Score=37.46 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=25.5
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++++.+++|.|| |..|..+++.+++ .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999997 5566666666653 253 58888875
No 241
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=76.32 E-value=17 Score=38.93 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=96.1
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCc
Q 010044 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (519)
Q Consensus 309 GTaaV~LAgll~Alk~~--------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~ 368 (519)
-||-.+++-+|.++|-. |..+.++||.|+|+|+.|..||+.|... | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 47777888888887743 3468899999999999999999999763 2 22
Q ss_pred EEEEecCCccccCCccC-CchhchhhccccCCCCCHHHHhcccCCcEEEeccCC----CCCCCHHHHHHHHcCCCCcEEE
Q 010044 369 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 369 i~lvDs~GLi~~~R~~~-l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG~S~~----~g~Ft~evv~~Ma~~~erPIIF 443 (519)
|. +.+|... ....+..+++ .-++.|...+ .|+++=..-- -++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 3444221 2233344443 3467777776 8888754321 2689999999997 566777
Q ss_pred EcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCC-EEec-ccCccceeechhhhHHHHHh
Q 010044 444 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNG-KVFV-PGQANNAYIFPGFGLGLVIS 506 (519)
Q Consensus 444 aLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G-~~~~-p~Q~NN~~iFPGiglG~l~~ 506 (519)
-.+.= +=|.-++.++.-+-.-|++.|- +|.-+. ...+ -.-..|+-+-|=||-..+.+
T Consensus 251 N~aRG---~iide~~l~eaL~sG~i~~aGl---DVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t 309 (336)
T KOG0069|consen 251 NTARG---AIIDEEALVEALKSGKIAGAGL---DVFEPEPPVDHPLLTLDNVVILPHIGSATLET 309 (336)
T ss_pred ecccc---ccccHHHHHHHHhcCCcccccc---cccCCCCCCCcchhcccceeEecccccCcHHH
Confidence 66553 3344444443322223555552 222111 1111 12235577777666554444
No 242
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=76.30 E-value=2.7 Score=39.02 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=56.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~v 410 (519)
.||-|+|.|..|.+||+.|... |. +++..|+. .+ ..+ .+... .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~---~~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PE---KAE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HH---HHH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hh---hhh----hhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 53 57777752 11 122 22221 2234689999988
Q ss_pred CCcEEEeccCCCCCCCHHHHHH---HHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 010044 411 KPTILIGSSGVGRTFTKEVIEA---MASFNEKPLILALSNPTSQSECTAEEAYT 461 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~---Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (519)
.|++|=+-..+ .=.++++.. .+...+..||.=+|+-. ||.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 68777432211 223455554 33345667777777655 5555544333
No 243
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.24 E-value=7.9 Score=41.23 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=28.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+++.+++|.|+|..|.++|+.+.+. |. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~-----G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKL-----GA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEEcCC
Confidence 5678999999999999999988763 63 68888864
No 244
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.85 E-value=11 Score=38.48 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999988653 43 1468888874
No 245
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=75.68 E-value=5.6 Score=42.16 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (519)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999976
No 246
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=75.44 E-value=5.9 Score=44.26 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=34.8
Q ss_pred HHHHHHHHH----------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 316 AGVVAALKL----------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 316 Agll~Alk~----------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|++.+++- .+..+++.+++|+|||.||.+|+..|.+ .| + +++++|+.
T Consensus 354 ~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 354 IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 456666653 1446888999999999888888877765 25 2 68888873
No 247
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=75.01 E-value=3.8 Score=41.21 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999875 65 789999987
No 248
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=74.37 E-value=3.8 Score=40.06 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+++|+|||.||+..|..+.+. |+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-----g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-----NL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEecc
Confidence 689999999999999987652 53 58889964
No 249
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=74.34 E-value=4.2 Score=42.72 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHH
Q 010044 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (519)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~ 352 (519)
-+||-++.-+++-+....|..|++..+-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47899999999999999999999999999998 8999999999964
No 250
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=74.16 E-value=15 Score=39.13 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc
Q 010044 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (519)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa 394 (519)
.|+.++|=.+..+. -.++.|+|+|.-+-..++.+... .++ ++|++.|+. .+....+...+.
T Consensus 116 AasavAa~~LA~~d--a~~laiIGaG~qA~~ql~a~~~v----~~~------~~I~i~~r~-------~~~~e~~a~~l~ 176 (330)
T COG2423 116 AASAVAAKYLARKD--ASTLAIIGAGAQARTQLEALKAV----RDI------REIRVYSRD-------PEAAEAFAARLR 176 (330)
T ss_pred HHHHHHHHHhccCC--CcEEEEECCcHHHHHHHHHHHhh----CCc------cEEEEEcCC-------HHHHHHHHHHHH
Confidence 34556665555542 34788999998755555444432 343 677777663 111222222222
Q ss_pred cc----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 010044 395 HE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (519)
Q Consensus 395 ~~----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (519)
+. .....++++||++ +|+++.++.. ..+|+.++|+. .-=|.-.=||+-.+-|+.+|-..+
T Consensus 177 ~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 177 KRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred hhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 22 2345799999998 9999998632 34889999872 222444446777889999976544
No 251
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.08 E-value=4.4 Score=38.67 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=58.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--------------cC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--------------HE 398 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--------------~~ 398 (519)
||.|+|||..|.|||-+++.+ |. ++.++|.+---...-.+.+......+.+. -.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999874 53 78888885221100000011100011110 01
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 010044 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (519)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (519)
-..+|.+++ . .|.+|=.-.-.--.++++.+.+.+.+..=.||+ || | +-.+..+.-+
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila-sn-T--Ssl~i~~la~ 124 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA-SN-T--SSLSISELAA 124 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE-E-----SSS-HHHHHT
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE-ec-C--CCCCHHHHHh
Confidence 124777777 3 788887654333577888888888875555553 44 2 3344544433
No 252
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=73.83 E-value=12 Score=40.74 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=84.3
Q ss_pred ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc
Q 010044 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (519)
Q Consensus 304 nDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~ 383 (519)
.|.-.||+--++-|++. .|..=|....+|+.|=|--|-|||..+... | -++++.+-+
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg~-----G-------A~ViVtEvD-------- 241 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRGM-----G-------ARVIVTEVD-------- 241 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhcC-----C-------CeEEEEecC--------
Confidence 37789999999999975 566778899999999999999999888532 4 245543331
Q ss_pred cCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 010044 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (519)
Q Consensus 384 ~~l~~~k~~fa~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~ 458 (519)
|.+.-=|. +.=..-++.||.+. .|++|=+++.-++++.|.++.|. +-.|.+ |-- -.-|+..+.
T Consensus 242 ----PI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~ 306 (420)
T COG0499 242 ----PIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAG 306 (420)
T ss_pred ----chHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHH
Confidence 21111111 22223579999998 99999999999999999999996 444443 322 235666544
No 253
>PRK07877 hypothetical protein; Provisional
Probab=73.80 E-value=6.5 Score=45.81 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=64.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch----------hchhhccc
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 396 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~----------~k~~fa~~ 396 (519)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+ ..+ +|+. .|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999999 899999998875 53 268999998733 221 2333 11111110
Q ss_pred -----cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 010044 397 -----HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 397 -----~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.+ .+ .++.+.+++ .|++|-++- +.=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 01 01 245566654 788777664 234666677777777888888775
No 254
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.75 E-value=9.2 Score=39.19 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=59.6
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh-chhhcc-ccCCCCCHHH
Q 010044 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAH-EHEPVNNLLD 405 (519)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~-k~~fa~-~~~~~~~L~e 405 (519)
+++.+|+|.|| |-.|..+++.|++. | .+++.+|++---.....+.+... +..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 34678999996 88888888888763 5 35777776521000000000000 001111 1122246778
Q ss_pred HhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 010044 406 AVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 446 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 446 (519)
+++..+||++|=+.+.... .+..+++++.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888889999977764311 1345566666544 457888654
No 255
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.11 E-value=9 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~~~eeA~~~i~lvDs~ 375 (519)
+||.|+|+|..|..+|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999998753 3 21 2467777763
No 256
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=73.11 E-value=4.2 Score=42.86 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||+++|||.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999876 65 789999985
No 257
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=72.82 E-value=25 Score=37.17 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhh-ccccCCCCC
Q 010044 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 402 (519)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~f-a~~~~~~~~ 402 (519)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. +...+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 4456788999999999999999999997 43 54 4555555422 1111111 22 124
Q ss_pred HHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 010044 403 LLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (519)
Q Consensus 403 L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (519)
|.|.++. .|+++-.-- .-++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8999987 999885431 12689999999996 4556654444
No 258
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=72.41 E-value=1.1e+02 Score=30.75 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 472 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsG 472 (519)
.+|++.= .+..+++.+++.++..+.|+++-++.... +.+++|.-++ |-.++.-|
T Consensus 173 GAD~v~v----~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 173 GADGIFV----EGLKDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CCCEEEe----CCCCCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 4666552 22348899999998889999987655432 6899999887 54444433
No 259
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=72.28 E-value=2.4 Score=44.44 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999875
No 260
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=72.24 E-value=4.3 Score=43.02 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.8
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (519)
+|+|+|||.||...|..+.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~ 22 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA 22 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 799999999999999988753
No 261
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=72.13 E-value=16 Score=35.87 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=52.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh-hcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHh
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~ee-A~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (519)
..++||.|+|.|..+. +|..+...+.. ++..+- +..-+.+.|..-+++.-- +-..+-..|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4578999999998766 77777665532 110000 011222322222222211 112233445442 33222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEE
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLIL 443 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIF 443 (519)
+ +-|++|+.|..|. |+++++.+. +...-|+|-
T Consensus 108 ~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 108 H--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred C--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 2 4799999999774 788888763 334444443
No 262
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=72.09 E-value=11 Score=41.77 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=60.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--cCCCCCHHHHhccc-
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI- 410 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--~~~~~~L~eav~~v- 410 (519)
|-|+|.|..|..+|..|+.. |. ++++.|+. ..+ ....++.+... .....++.|+++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l~ 62 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSLE 62 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhcC
Confidence 77999999999999999764 53 57777763 111 22222221110 11235788877654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (519)
+|+++| ++-.++...+++++.+..+ .+..||.=+||
T Consensus 63 ~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 63 RPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 3444556778888887654 56789999998
No 263
>PRK06046 alanine dehydrogenase; Validated
Probab=71.82 E-value=24 Score=36.82 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=65.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~e 405 (519)
.-.++.|+|+|..|...++.+... .+ .++++++|++- ++ .....+.+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988888777542 23 37899998852 21 22333333211 112357888
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHH
Q 010044 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEE 458 (519)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe~ 458 (519)
+++ .|+++-++.. ..+|..++++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 8998877632 3478888885 333566664 444579999874
No 264
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.60 E-value=4.6 Score=42.05 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||+++|||.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 76 699999987
No 265
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.55 E-value=18 Score=40.37 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 346899999999999999999764 54 57777764
No 266
>PRK08618 ornithine cyclodeaminase; Validated
Probab=71.39 E-value=10 Score=39.52 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=62.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCCCHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~~L~e 405 (519)
...++.|+|+|..|-.++..+... .++ ++|.++|+. .+| .....+.+... .....++.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999998887666542 243 689988874 222 22222222211 112467899
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHH
Q 010044 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAE 457 (519)
Q Consensus 406 av~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe 457 (519)
+++. .|++|-++..+ ..|+ ++++ +..-|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9986 99999776433 2444 4443 444566663 32246888883
No 267
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.28 E-value=12 Score=37.23 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
||.|+|+|..|..+++-|.+. |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 689999999999999998753 432 245666665
No 268
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=71.28 E-value=18 Score=41.58 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeeeeeecCCCc----cHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCccc
Q 010044 256 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAE 331 (519)
Q Consensus 256 ~~y~~~idefv~av~~~fGp~~lIqfEDf~~~----~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d 331 (519)
+.|.+.|-|.++++.+ +.+ .||.+.. =--.+++||..+|--|+-... .++.|- ...++
T Consensus 68 ~~y~~~V~Eli~~L~~----nGF--VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF--~~qR~ 129 (637)
T TIGR03693 68 APYQKRVFEIGEILYK----NGF--VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKF--ELSRN 129 (637)
T ss_pred HHHHHHHHHHHHHHHh----CCc--eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhh--hhhhc
Confidence 3444444455554433 222 4665422 123478999877655543321 112222 22389
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-----------cCCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----------HEPV 400 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-----------~~~~ 400 (519)
.||+++|.|.-|..+.-.|+. .|+ .+|..+|.+=.. ++.. .+.+. ..-|++ ....
T Consensus 130 akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~-SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~ 195 (637)
T TIGR03693 130 AKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEE-HALD-RIHEL-AEIAEETDDALLVQEIDFAED 195 (637)
T ss_pred ccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccc-hhhh-HHHHH-HHHHHHhCCCCceEeccCCcc
Confidence 999999999998888777765 376 688888766442 2111 01122 233332 1123
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 010044 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (519)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (519)
.++.++++. .|++|=+|..+..---.++-+-+.-..+|.|
T Consensus 196 ~dl~ev~~~--~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 196 QHLHEAFEP--ADWVLYVSDNGDIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred hhHHHhhcC--CcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence 578899987 7999988876633333344443433344443
No 269
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=71.13 E-value=4.9 Score=42.07 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (519)
.|+|+|||.||...|..+.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~ 22 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA 22 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC
Confidence 589999999999999888753
No 270
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.56 E-value=5.4 Score=41.73 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.+|+|+|||.+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999999763 5 4688999864
No 271
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=70.25 E-value=8.7 Score=33.49 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=50.9
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEe
Q 010044 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (519)
Q Consensus 338 GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vkptvLIG 417 (519)
|.|..|.+++++|...-.. .+ -+=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 2446778887444333 1111122233468999999788999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 418 SSGVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 955 4355555555555 2456664
No 272
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=69.72 E-value=5.5 Score=41.84 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999999543 123 589999986444
No 273
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=69.60 E-value=8 Score=40.53 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=53.4
Q ss_pred cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCcc
Q 010044 305 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (519)
Q Consensus 305 DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~ 384 (519)
|++.+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .|. ++|+++|.. ++|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCCC----HHH--
Confidence 444444444445444442222323333399999999999987443322 364 689988873 322
Q ss_pred CCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEeccCCC
Q 010044 385 SLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSGVG 422 (519)
Q Consensus 385 ~l~~~k~~fa~~--~~~~~-~L~eav----~~vkptvLIG~S~~~ 422 (519)
|...++.++-+ ..+.. ...+.+ .+..+|+.|=+|+.+
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 44444433322 11111 233333 223689999999843
No 274
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=69.40 E-value=9.4 Score=40.66 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=54.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc--cccCCccCCchhchhhccc---cCC---CCCH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HEP---VNNL 403 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL--i~~~R~~~l~~~k~~fa~~---~~~---~~~L 403 (519)
.||.|+|||+=|+++|..+.+. |- .=++|..|.+=. |..+|. ..+|... ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999874 41 236777664311 112221 1122221 122 2578
Q ss_pred HHHhcccCCcE-EEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcC
Q 010044 404 LDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMAS-FNEKPLILALS 446 (519)
Q Consensus 404 ~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLS 446 (519)
.++++. .|+ ++++++ -+.+++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 554 455554 467778887752 23444554444
No 275
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.95 E-value=6.2 Score=41.47 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999875 65 789999986
No 276
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=68.74 E-value=6.5 Score=39.14 Aligned_cols=38 Identities=34% Similarity=0.527 Sum_probs=33.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++|++-|++++|+|.-|..+++.|+.+ |+ ++++++|.+
T Consensus 26 ~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 26 QKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 578899999999999999999999876 65 569999986
No 277
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=68.34 E-value=23 Score=38.38 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=77.0
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcC--cEEEE--ecCCccccCCccCCchhchhhccccCCCCCHH
Q 010044 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (519)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~--~i~lv--Ds~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ 404 (519)
+=.||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=..++-.-+|.+-.-++.....-..+-.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y 115 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPY 115 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCH
Confidence 3479999999 99999999988653 44100 01 34455 44211111100012222223322111012345
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc--CCcE
Q 010044 405 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS--KGRA 467 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~wt--~G~a 467 (519)
+.++. .|++|=+.+.+ |- +=+++.+.+.++. +.-||+--|||- .+..--+++++ ..+-
T Consensus 116 ~~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~r 190 (387)
T TIGR01757 116 EVFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRK 190 (387)
T ss_pred HHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCccc
Confidence 66776 89998666654 21 1246677777755 899999999996 44444555554 2356
Q ss_pred EEEcCCCCCcc
Q 010044 468 IFASGSPFDPF 478 (519)
Q Consensus 468 ifAsGSPf~pv 478 (519)
+|.||.-.+.-
T Consensus 191 viG~gT~LDsa 201 (387)
T TIGR01757 191 NFHALTRLDEN 201 (387)
T ss_pred EEEecchhHHH
Confidence 88888655533
No 278
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=68.16 E-value=32 Score=36.47 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeec-CCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 010044 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (519)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAG 340 (519)
+.+.+..+.. | .++++ +-.+.. .+.+.+.+| .++||.|- |-.-=-+=+||=++.-.+..|++|++.||+++|-+
T Consensus 91 l~DTarvls~-y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLGR-M-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHHH-h-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 4445544444 5 44433 334332 233334444 46899993 22222345677777777777778999999999987
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEEE
Q 010044 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILI 416 (519)
Q Consensus 341 sAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~---~~~~~L~eav~~vkptvLI 416 (519)
.- ++++-++.++.+ .|+ ++.++-.+++.-.+ + .-+.-+.+++. . ....++.+++++ +||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 377776666655 464 68888887773321 1 11111233332 1 123689999998 99998
Q ss_pred ecc
Q 010044 417 GSS 419 (519)
Q Consensus 417 G~S 419 (519)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 279
>PRK06847 hypothetical protein; Provisional
Probab=68.14 E-value=6.8 Score=40.15 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (519)
..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999999865
No 280
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=67.94 E-value=7.2 Score=41.37 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
.||||+|+|.||+..|..|.+. |- .-+|.|+|++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999988653 21 137888888754
No 281
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=67.58 E-value=4.6 Score=45.54 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=32.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
++..|++++|||+-|++||+-|+.. |+ ++|-+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4568999999999999999999987 54 78999997533
No 282
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=67.52 E-value=18 Score=37.95 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
|++.||.|+|+|..|-++|..|.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5788999999999999999999763
No 283
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=67.38 E-value=46 Score=37.49 Aligned_cols=186 Identities=22% Similarity=0.257 Sum_probs=116.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeeeeeecCCCccHH---HHHHHHcCCC----------cee----ecCCcchhHHHHHHH
Q 010044 256 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF---ELLAKYGTTH----------LVF----NDDIQGTASVVLAGV 318 (519)
Q Consensus 256 ~~y~~~idefv~av~~~fGp~~lIqfEDf~~~~af---~iL~ryr~~~----------~~F----nDDiQGTaaV~LAgl 318 (519)
.|-..+.-.||..+.+--||..=+==+|++ -..+ -+++.|+..+ ++- |+-.--|+-=|..++
T Consensus 158 nEi~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~ 236 (514)
T KOG2250|consen 158 NEIERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYV 236 (514)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHH
Confidence 344555667777777778887777777776 3333 3577776311 111 444444555444444
Q ss_pred HHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhc-hhhcc
Q 010044 319 VAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAH 395 (519)
Q Consensus 319 l~Alk~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k-~~fa~ 395 (519)
=+=++-.+ +++++.||++-|-|--|.-.|+.|.+. | -+-|=+.|++|.|.... .++..+ ..++.
T Consensus 237 e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid~~eL~~~~~ 303 (514)
T KOG2250|consen 237 EAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GIDIEELLDLAD 303 (514)
T ss_pred HHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCCHHHHHHHHH
Confidence 44444444 789999999999999999999988764 4 26788999999998864 344432 23333
Q ss_pred ccCCCCCHHHH--------------hcccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEEcCC-CCCCCCCCHHHH
Q 010044 396 EHEPVNNLLDA--------------VKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSN-PTSQSECTAEEA 459 (519)
Q Consensus 396 ~~~~~~~L~ea--------------v~~vkptvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSN-Pt~~~E~tpe~A 459 (519)
....++++.++ .---+.|+|+=+.++ +.+|.|=.+.+ ++.+ |+|.==|| ||+ || ++++
T Consensus 304 ~k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~v 377 (514)
T KOG2250|consen 304 EKKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEV 377 (514)
T ss_pred hhccccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHH
Confidence 22222221111 111258999999998 68887766665 5544 89999999 553 33 2355
Q ss_pred hc
Q 010044 460 YT 461 (519)
Q Consensus 460 ~~ 461 (519)
++
T Consensus 378 le 379 (514)
T KOG2250|consen 378 LE 379 (514)
T ss_pred HH
Confidence 55
No 284
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.31 E-value=27 Score=35.12 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999998653 53 68888853
No 285
>PRK06184 hypothetical protein; Provisional
Probab=67.20 E-value=6.9 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++..|+|+|||.+|+..|-+|.+. |+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-----Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-----GV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEeCC
Confidence 457899999999999999888763 65 46677765
No 286
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=67.04 E-value=17 Score=37.21 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=55.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhccccCCCCCHHHHh
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 407 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~~~~~~~~L~eav 407 (519)
...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-. ...+........+-.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhc
Confidence 456899999999999999988764 4 34555555321 11111111000 000000000111122233
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (519)
. .+|++| ++... .-++++++.+... .+..+|+.|-|=-.
T Consensus 71 ~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 71 P--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred C--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 368776 44432 3468888887653 35667888998764
No 287
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.92 E-value=22 Score=34.91 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=41.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
||+|.|| |-.|..+++.+.+. | .+++.+++. ..| + ....++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d-~-----------~~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLD-L-----------TDPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccC-C-----------CCHHHHHHHHHhCC
Confidence 5889996 99999999888652 4 357777763 111 2 11245788888889
Q ss_pred CcEEEeccCC
Q 010044 412 PTILIGSSGV 421 (519)
Q Consensus 412 ptvLIG~S~~ 421 (519)
||++|=+.+.
T Consensus 51 ~d~vi~~a~~ 60 (287)
T TIGR01214 51 PDAVVNTAAY 60 (287)
T ss_pred CCEEEECCcc
Confidence 9999988764
No 288
>PRK07236 hypothetical protein; Provisional
Probab=66.87 E-value=8.1 Score=40.26 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
....+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC
Confidence 4568999999999999999999763
No 289
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=66.81 E-value=7.1 Score=41.23 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
+-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 34689999999999999999875 54 45666665443
No 290
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=66.81 E-value=8.9 Score=39.82 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=57.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---ccCCCCCHHHHh
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---~~~~~~~L~eav 407 (519)
-.++.|+|+|.-+..-++.+... .++ ++|++.|+. ..+ ...+...+.+ ......++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877664 233 788888874 222 2233333333 112246899999
Q ss_pred cccCCcEEEeccCCCC---CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 010044 408 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (519)
+. +||++.++.... +|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHh
Confidence 98 999998865443 78888886 455777776422 3468877543
No 291
>PRK07233 hypothetical protein; Provisional
Probab=66.81 E-value=6.2 Score=40.95 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888763 5 357777776
No 292
>PLN02688 pyrroline-5-carboxylate reductase
Probab=66.69 E-value=21 Score=35.29 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=50.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEE-ecCCccccCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lv-Ds~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~eav~~v 410 (519)
||.|+|.|..|.++|+-|++. |.- -..+|+++ |+. .++ . +.+... .....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998763 420 02367777 542 111 1 111111 1112456666664
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (519)
.|++| ++..+ ...+++++.+... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 56555 22223 3456666665432 3344555554444
No 293
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=66.57 E-value=25 Score=36.28 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=62.9
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh----------chhh
Q 010044 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (519)
Q Consensus 325 ~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~----------k~~f 393 (519)
++..++..||+|.|| |-.|..+++.|++. | -+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345567789999997 99999999988753 4 257777753 11110111110 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 010044 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (519)
.. +-.+...|.+++++ ||++|=+.+.... .|..+++.+.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11122356777775 9999988775432 2457888887765568998754
No 294
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.47 E-value=8 Score=37.76 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=29.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 47899999999999999999888764 4 47888864
No 295
>PRK08163 salicylate hydroxylase; Provisional
Probab=66.46 E-value=7.4 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.6
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (519)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988865
No 296
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=66.06 E-value=3.9 Score=42.04 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=27.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
+|||+|+|.||+..|+.+.+.. . ..-+|.|+|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999998885421 1 1347999997654
No 297
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=66.05 E-value=7.2 Score=39.34 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|++--
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCCC
Confidence 5679999999999999988765 253 6888887643
No 298
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=65.83 E-value=13 Score=39.82 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=38.7
Q ss_pred CHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCH
Q 010044 402 NLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 456 (519)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tp 456 (519)
-+.|.+++ .|++|=+.-.|| +.|+|+|++|. .-.+|.=|+--+ -++|+|-
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~ 292 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTE 292 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCccccc
Confidence 46777776 899998776554 89999999997 788999888644 4577664
No 299
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=65.66 E-value=6.4 Score=42.19 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999652 11 1368888775
No 300
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=65.48 E-value=8.4 Score=42.18 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.8
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
+....+|+|+|||+||+..|+.+.+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~ 32 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE 32 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc
Confidence 34567899999999999999988753
No 301
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=65.43 E-value=16 Score=39.81 Aligned_cols=85 Identities=11% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc----
Q 010044 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (519)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa---- 394 (519)
..++.-....|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .... ++....+....
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~-~d~~~l~~~~~~~~~ 377 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTE-EDYARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCH-HHHHHHHHHcCCCeE
Confidence 4444445567889999999888888999998754 4762 3333211 1111 10001101110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEecc
Q 010044 395 -HEHEPVNNLLDAVKVIKPTILIGSS 419 (519)
Q Consensus 395 -~~~~~~~~L~eav~~vkptvLIG~S 419 (519)
.+..+...+.+.++..+||++||-|
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 0111224588888999999999853
No 302
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=65.39 E-value=8.9 Score=36.06 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=28.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
+|++.+|||+|+|..|.-.++.|+++ | .++.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcC
Confidence 57899999999999999999988764 4 36777754
No 303
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=65.33 E-value=22 Score=35.63 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=28.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++.||.|+|+|..|..++..|.+. |.- ..++++.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCC
Confidence 457899999999999999999763 321 12468888864
No 304
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=65.27 E-value=31 Score=36.75 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.7
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..+|.|+| +|..|-.+|..+.++ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899998 999999999999763 53 47788864
No 305
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=65.20 E-value=9.6 Score=37.70 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeecc
Confidence 48999999999999999977 25 4899999983
No 306
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=65.14 E-value=3.3 Score=43.41 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=60.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch-------hhcc-ccCCCCCHHH
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 405 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~-------~fa~-~~~~~~~L~e 405 (519)
|+|+|+|..|-.+++.|++.. . ..++.+.|++ .++ +..... .+.. +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~------~~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----P------FEEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----C------E-EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----C------CCcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 789999999999999987631 1 1278888884 111 111111 1111 1222235888
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcC
Q 010044 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 472 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsG 472 (519)
.+++ .|++|-+++.. +...++++-.+. ..+.|= .|..+...+---++|.+ .+-.+|.++|
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD-~~~~~~~~~~l~~~a~~-~g~~~l~~~G 123 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD-TSYVTEEMLALDEEAKE-AGVTALPGCG 123 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE-SS-HHHHHHHCHHHHHH-TTSEEE-S-B
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec-cchhHHHHHHHHHHHHh-hCCEEEeCcc
Confidence 9987 79999988754 788888875542 345554 22211112222234432 2334566666
No 307
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=65.12 E-value=24 Score=37.53 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.8
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
.|++.+|.|+|.|+.|.++|..|...
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 46788999999999999999999653
No 308
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=64.80 E-value=7 Score=40.74 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
+.+|+|+|||.||+..|-.|.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 309
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=64.72 E-value=5.6 Score=40.96 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-..|-|+|||-.|.|||...+.+ |+ ++|++|++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 34678999999999999998774 65 79999985
No 310
>PRK09126 hypothetical protein; Provisional
Probab=64.57 E-value=8 Score=39.97 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
+..|+|+|||.||+..|-.|.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC
Confidence 45799999999999999998763
No 311
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=64.11 E-value=7.6 Score=40.17 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999987754 253 688888764
No 312
>PLN02268 probable polyamine oxidase
Probab=64.09 E-value=3.1 Score=44.00 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.1
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (519)
+|+|+|||-||+..|..|.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 789999999999999999763
No 313
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=64.04 E-value=6.7 Score=36.16 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
+|+|+|.+|+.+++.|++.. . ....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~------~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-D------PKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-C------CCCCCEEEEEcCCCc
Confidence 48999999999999998863 1 112468999999755
No 314
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=63.94 E-value=13 Score=41.34 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-...+|+|+|||.||+..|..+... |. +++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~-----G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM-----GH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999988652 53 48888864
No 315
>PRK06475 salicylate hydroxylase; Provisional
Probab=63.76 E-value=7.9 Score=40.60 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (519)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988865
No 316
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.13 E-value=10 Score=37.24 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.8
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+|+++|+||+|+|..|..-++.|+.+ | .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47788999999999999999999874 4 368888764
No 317
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.81 E-value=12 Score=37.16 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=56.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhch-hhc-c----ccCCCCCHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA-H----EHEPVNNLLD 405 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~-~fa-~----~~~~~~~L~e 405 (519)
.+|+|+|+|..|..+|+.|.+. | .++.++|.+--.. ..+.. .+. + +......|.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~-------~~~~~~~~~~~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERV-------EEFLADELDTHVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHH-------HHHhhhhcceEEEEecCCCHHHHHh
Confidence 3799999999999999999763 4 4788888852211 11111 111 1 1222346777
Q ss_pred H-hcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEE-EEcCCCC
Q 010044 406 A-VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLI-LALSNPT 449 (519)
Q Consensus 406 a-v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPII-FaLSNPt 449 (519)
| +.. .|++|-+++.. -.--++-.|+.. ..-|-| -=..||.
T Consensus 62 agi~~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 62 AGIDD--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred cCCCc--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 7 665 99999888754 333455555532 234444 4455563
No 318
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=62.74 E-value=13 Score=40.42 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=48.0
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccC
Q 010044 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 398 (519)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~ 398 (519)
+.++.-....|...||+++|-+.-..++++.+.+ .|+.. ..+ .++++.= ....+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~-~~~~~~~----~~~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAA-VTTTGSP----LLQKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEE-EeCCCCH----HHHhCCcC-cEEe---C
Confidence 3444444456778999999988888999999754 47632 111 1221100 00001110 0111 2
Q ss_pred CCCCHHHHhcccCCcEEEeccC
Q 010044 399 PVNNLLDAVKVIKPTILIGSSG 420 (519)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~ 420 (519)
+...|++.++..+||++||-|-
T Consensus 361 D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 2246788888889999998664
No 319
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=62.73 E-value=10 Score=41.34 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=29.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
+.-+++|+|||.+|+++|..|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 356899999999999999999775 653 388888874
No 320
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=62.57 E-value=11 Score=30.53 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.5
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
|+|||.+|+..|..|.+. | .++.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 689999999999999763 4 48999998644
No 321
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=62.37 E-value=9 Score=41.74 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
-.|+|+|||.||...|..+.+.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 4789999999999999888753
No 322
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=62.25 E-value=9.6 Score=36.99 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 48999999999999988754 354 577777764
No 323
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.21 E-value=6.9 Score=40.37 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=65.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh------------chhhcc
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAH 395 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~------------k~~fa~ 395 (519)
+|++++|+++|.|-.|--+++.|+.. |+ .+|.++|-+-+=..+--..+... ++.+..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~ 95 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQ 95 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHh
Confidence 58899999999999999999988764 75 78999998866443211011111 111111
Q ss_pred ccCCC-----------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc-----CCCC
Q 010044 396 EHEPV-----------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-----SNPT 449 (519)
Q Consensus 396 ~~~~~-----------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-----SNPt 449 (519)
-.+.+ .++.+-+.. .||-+|=+.-. +=++--+-+-+..++.|+|=.+ +|||
T Consensus 96 InP~c~V~~~~~f~t~en~~~~~~~-~~DyvIDaiD~--v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPT 162 (263)
T COG1179 96 INPECEVTAINDFITEENLEDLLSK-GFDYVIDAIDS--VRAKVALIAYCRRNKIPVISSMGAGGKLDPT 162 (263)
T ss_pred hCCCceEeehHhhhCHhHHHHHhcC-CCCEEEEchhh--hHHHHHHHHHHHHcCCCEEeeccccCCCCCc
Confidence 01111 144554444 67777766531 2233333344567888999877 6787
No 324
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=5.1 Score=47.24 Aligned_cols=118 Identities=21% Similarity=0.267 Sum_probs=73.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC--CCHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLL 404 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~--~~L~ 404 (519)
++|.++++.++|||+.|+-..+-++.. |+.--+ ...|.+.|-+ +|.++ +|+..-.---++.... ..-.
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDmD-~IEkS---NLnRQFLFR~~dVgk~KSe~AA 495 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDMD-HIEKS---NLNRQFLFRPWDVGKPKSEVAA 495 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEeccc-hhhhc---cccceeeccccccCchHHHHHH
Confidence 679999999999999999887777653 543211 1356666655 33333 2443211111121111 3467
Q ss_pred HHhcccCCcEEEe-------ccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 010044 405 DAVKVIKPTILIG-------SSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 469 (519)
Q Consensus 405 eav~~vkptvLIG-------~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aif 469 (519)
+|+...+|++-|= -.+ -++|+.+.-+.+. =++=||=|= ||-.|-|.||+|
T Consensus 496 ~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 496 AAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 8899999999873 233 2588888877763 234456663 678888999987
No 325
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=62.03 E-value=12 Score=38.13 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=26.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 356789999999999999988775 54 68888876433
No 326
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.00 E-value=13 Score=41.26 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=64.5
Q ss_pred CCCCccccchhhhhhHhhhcCCCCCceeeEEe-ecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe
Q 010044 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (519)
Q Consensus 199 lG~~GmgI~iGKl~Ly~a~gGI~P~~~lPI~L-DvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~ 277 (519)
.||.|. ||+++-.|.|+-==-....+.| .|+.| +|.=.-+..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCC-CCc
Confidence 577663 8999999999865222555555 55432 23222333333 788
Q ss_pred eeeeecCCCccHHHHHHHHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010044 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (519)
Q Consensus 278 lIqfEDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 339 (519)
+|-+|||... |.+=++-..+-.-|++ .-.-|||.||||++-=.-..=.+.||+|+=.
T Consensus 289 IivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 9999999643 5444444443333333 4677999999999764444445677777653
No 327
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=61.98 E-value=10 Score=41.24 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-----G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-----G-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CcEEEEecC
Confidence 457999999999999999988652 5 358888875
No 328
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=61.73 E-value=11 Score=38.94 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..+|+|+|||.||+..|-+|.+.- + .|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 457999999999999999987630 0 154 57777773
No 329
>PRK07045 putative monooxygenase; Reviewed
Probab=61.60 E-value=10 Score=39.35 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
-+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 4799999999999999888764
No 330
>PRK07589 ornithine cyclodeaminase; Validated
Probab=61.42 E-value=45 Score=35.59 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=65.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCCHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~L~ea 406 (519)
.-.++.|+|+|.-+..-++.++... . -++|++.|+. ..+ ...+.+.+.+. -....+++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHH
Confidence 3478999999998888777776531 2 3678888763 221 22233233221 1123689999
Q ss_pred hcccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 010044 407 VKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (519)
Q Consensus 407 v~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~ 458 (519)
++. +||++.++... -+|..++++. .--|-++ |+--.+.|+.++-
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 998 99999877432 3688888853 2235554 4544578998875
No 331
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=61.39 E-value=12 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+-...+|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~-----G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKA-----G-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 34568999999999999999998653 5 367788864
No 332
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.22 E-value=10 Score=43.10 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 578999999999999999998763 53 47778864
No 333
>PRK06753 hypothetical protein; Provisional
Probab=61.18 E-value=10 Score=38.89 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.7
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (519)
+|+|+|||.||+..|..|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999988663
No 334
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=61.06 E-value=34 Score=34.82 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
.||.|+|+|..|-.+|.-|.+. |.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 3799999999999999988653 531 2346888886
No 335
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=60.76 E-value=36 Score=33.37 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=44.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh----chhhcc-ccCCCCCHHHH
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 406 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~----k~~fa~-~~~~~~~L~ea 406 (519)
||+|.|| |..|..+++.|++. |- .-+++.+|+... ..+.+.+... ...+.. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88999998888653 31 136777775211 0111111111 111111 22223467888
Q ss_pred hcccCCcEEEeccCC
Q 010044 407 VKVIKPTILIGSSGV 421 (519)
Q Consensus 407 v~~vkptvLIG~S~~ 421 (519)
++..++|++|=+++.
T Consensus 69 ~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 69 FTEHQPDAVVHFAAE 83 (317)
T ss_pred HhhcCCCEEEEcccc
Confidence 888889999988874
No 336
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=60.66 E-value=26 Score=35.35 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777764
No 337
>PRK12828 short chain dehydrogenase; Provisional
Probab=60.64 E-value=16 Score=34.24 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=25.2
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 6666666666654 253 58888874
No 338
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=60.61 E-value=10 Score=38.25 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=29.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
.+-.|+|+|||.||+..|..+.+. | .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-----G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-----G-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecCCCC
Confidence 467899999999999999887653 5 468888887543
No 339
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=60.03 E-value=9.9 Score=39.16 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..|+|+|||.||+..|-.|.+. |+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQS-----GL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 4699999999999999887652 53 57777765
No 340
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=59.73 E-value=11 Score=40.54 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999998763 5 4788999864
No 341
>PRK05993 short chain dehydrogenase; Provisional
Probab=59.72 E-value=21 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=22.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 57899998 6666667766654 353 68888764
No 342
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=59.70 E-value=10 Score=40.66 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
-.|+|+|||.||...|-.+.+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~ 27 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLARE 27 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhC
Confidence 4799999999999999888653
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.67 E-value=13 Score=40.13 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.8
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHH
Q 010044 325 IGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
.+..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 3456778899999999999999988865
No 344
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=59.56 E-value=11 Score=39.18 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.+|||+|+|.||+..|+.|.+. +- .-+|.+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 4899999999999999998653 11 23677777654
No 345
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.26 E-value=22 Score=35.84 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=25.6
Q ss_pred CCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 326 GGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 326 g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+..+++.+++|.|| |-.|..+|+.+++ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~-----~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFAR-----RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHH-----CC-------CEEEEEECC
Confidence 45577789999997 4555556665543 35 368888875
No 346
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=59.12 E-value=12 Score=40.03 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999888763 5 4699999864
No 347
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=59.08 E-value=11 Score=40.55 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
.+|++|=||++|||..|.-++++|+.. |+ .+|-++|-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999875 65 67888887644
No 348
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.75 E-value=47 Score=34.53 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=24.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
--.+++++|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak-~----~G~------~~Vi~~~~ 218 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGAR-M----AKA------SRIIAIDI 218 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcC
Confidence 345789999999987777655443 2 253 46777765
No 349
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=58.48 E-value=15 Score=39.36 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=47.5
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc----
Q 010044 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (519)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa---- 394 (519)
..++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+.
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456788999999988888999987754 4873 3333211 1111 11111111110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEeccC
Q 010044 395 -HEHEPVNNLLDAVKVIKPTILIGSSG 420 (519)
Q Consensus 395 -~~~~~~~~L~eav~~vkptvLIG~S~ 420 (519)
-...+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111124668888899999999764
No 350
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=58.45 E-value=8.9 Score=41.96 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+.|++-+|+++|+|+.|.-+++.|+.. |+ .+|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357899999999999999999999875 75 789999986
No 351
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=58.34 E-value=32 Score=39.51 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=51.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
.||.|+|+|..|..+|+.+... |. ..+++++|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999998753 53 2458888874 111 111110 10000122356666664
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcC
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 446 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLS 446 (519)
+|++| ++..+ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44333 35566777766432 333444344
No 352
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=58.21 E-value=5.2 Score=44.60 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=32.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCC--ChhhhcCcE-----EEEecCCcccc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 380 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~--~~eeA~~~i-----~lvDs~GLi~~ 380 (519)
+||+|+|||-||++.|..|.++ |. +.-||+.++ =..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999886 54 445666542 12567776654
No 353
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=58.17 E-value=33 Score=36.67 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
||.|+|+|..|..+|..+.+. |. +++++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G~-------~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----GH-------EVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----CC-------eEEEEECC
Confidence 799999999999999998763 52 57888874
No 354
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.90 E-value=20 Score=34.23 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=25.2
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+++.+++|.|| |..|..+|+.+++ .| -+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 46678999996 7777777777754 25 267887774
No 355
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=57.75 E-value=10 Score=40.51 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.4
Q ss_pred CcccceEEEeCcchHHHHHHHHH
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELI 350 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll 350 (519)
..+..||||+|+|.||+..|+.|
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L 29 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNL 29 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHh
Confidence 34567999999999999988766
No 356
>PRK00536 speE spermidine synthase; Provisional
Probab=57.56 E-value=18 Score=37.26 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=49.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC-CCHHHHhccc
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~eav~~v 410 (519)
.||+|+|+|-.| +++-+++. .+++.|||-++-|++--.+.++....-|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh------------~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY------------DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc------------CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999875 45555543 13899999999777543333655554443221111 1222211 13
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMA 434 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma 434 (519)
+-||+|-=| +|+++-.+.+.
T Consensus 139 ~fDVIIvDs----~~~~~fy~~~~ 158 (262)
T PRK00536 139 KYDLIICLQ----EPDIHKIDGLK 158 (262)
T ss_pred cCCEEEEcC----CCChHHHHHHH
Confidence 689998655 37777665553
No 357
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=57.56 E-value=13 Score=38.13 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=26.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
.|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-----g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-----G-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccCC
Confidence 589999999999999888652 5 35888888654
No 358
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=57.56 E-value=10 Score=38.89 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.2
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 010044 334 FLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~ 353 (519)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999999764
No 359
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=57.42 E-value=11 Score=39.14 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999988754 364 577888753
No 360
>PLN02676 polyamine oxidase
Probab=57.41 E-value=27 Score=38.47 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=27.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
...+|+|+|||.+|++.|..|.+. |. +++.+++++.-
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-----g~------~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-----GI------EDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEecCCCC
Confidence 355799999999999999998763 53 34556666543
No 361
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=57.40 E-value=34 Score=36.02 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=27.1
Q ss_pred CCHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 401 NNLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 401 ~~L~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
+.|.+.... .|+ ++|-|-..+ |-.-++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 356666766 898 777664332 4455899999 5899997
No 362
>PLN02463 lycopene beta cyclase
Probab=57.40 E-value=12 Score=41.07 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999988864 264 46666664
No 363
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.37 E-value=14 Score=37.87 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
.||.|+|||..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 3899999999999999988764
No 364
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=57.34 E-value=16 Score=38.24 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 355799999999999999988763 242 47889998643
No 365
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=57.31 E-value=12 Score=41.87 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.||+|+|||.+|+..|+.+++. |+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 366
>PRK06392 homoserine dehydrogenase; Provisional
Probab=57.30 E-value=45 Score=35.29 Aligned_cols=82 Identities=15% Similarity=0.269 Sum_probs=49.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-hhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc----cCCCC--CHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 405 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~-~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~----~~~~~--~L~e 405 (519)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.+... +... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 79999999999999999876210 112321 12355679999888765322222111 1110 01112 5666
Q ss_pred HhcccCCcEEEeccC
Q 010044 406 AVKVIKPTILIGSSG 420 (519)
Q Consensus 406 av~~vkptvLIG~S~ 420 (519)
.++ .++||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999999884
No 367
>PRK07588 hypothetical protein; Provisional
Probab=57.23 E-value=13 Score=38.62 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (519)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988875
No 368
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=57.16 E-value=10 Score=39.55 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
++|..-+|+|+|+|.-|.-+|+-|+.+ |+ ++|.++|.+=
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 568899999999999999999999876 65 6899999863
No 369
>PRK06185 hypothetical protein; Provisional
Probab=56.97 E-value=13 Score=38.79 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=26.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 34679999999999999988765 364 466777653
No 370
>PLN02240 UDP-glucose 4-epimerase
Probab=56.87 E-value=24 Score=35.75 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=59.1
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCch------hchhhcc-ccCC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~------~k~~fa~-~~~~ 399 (519)
.|...||+|.|| |-.|..+++.|++. | .+++++|+..--.......+.. .+..+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88888898888753 4 3678887542100000000000 0011111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEc
Q 010044 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILAL 445 (519)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaL 445 (519)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 131 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS 131 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2356777776789999987764321 123566777665556788753
No 371
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=56.81 E-value=14 Score=37.88 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
...|+|+|||.+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999888763 5 4688898764
No 372
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=56.80 E-value=17 Score=31.11 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=52.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
.||.|+|+|..|......+.... .+ .+=..++|.+. +......+.|-- +...++.|.++.-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~---~~------~~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS---PD------FEVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT---TT------EEEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcC---CC------cEEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhc
Confidence 38999999999777765554420 11 12244666531 112222223322 24578999999878
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
+|+++ +++.. ....++++...+... +|+.
T Consensus 63 ~D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 63 VDAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp ESEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CCEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 99988 44434 466677776655433 5554
No 373
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=56.78 E-value=14 Score=38.60 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999988765 365 46667754
No 374
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=56.75 E-value=12 Score=38.22 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=24.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
|+|+|||.||+..|-.|.+. |+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-----G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-----GL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-----CC-------EEEEEeCCC
Confidence 79999999999999888753 64 566777664
No 375
>PRK08013 oxidoreductase; Provisional
Probab=56.70 E-value=13 Score=39.08 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=25.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+-.|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3579999999999999987765 365 45666654
No 376
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=56.52 E-value=13 Score=41.04 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
-.|||+|+|.+|++||..+... |+ ++.|+|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999888763 65 588888763
No 377
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=56.47 E-value=14 Score=39.83 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+++|+|||.||+.+|..|.+. | .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~-----G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQL-----N-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999888642 4 467788774
No 378
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=56.29 E-value=14 Score=38.89 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=29.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC--CccccCC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLIVSSR 382 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~--GLi~~~R 382 (519)
...|+|+|||.||+..|-.|.+. |+ ++-++++. .+...+|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-----G~-------~V~l~E~~~~~~~~~~r 43 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-----GL-------DVTLLERAPRELLERGR 43 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEccCccccccCce
Confidence 45799999999999999888764 64 57778876 3334444
No 379
>PRK08244 hypothetical protein; Provisional
Probab=56.16 E-value=13 Score=40.21 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
..|+|+|||.+|+..|-.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 4699999999999999988663
No 380
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=55.75 E-value=17 Score=38.36 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=26.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcccc
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 380 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~ 380 (519)
|+|+|||.||+.+|-.|.+. + .| .++.++|+.-.+..
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~-~g-------~~V~lle~~~~~~~ 38 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--R-PD-------FRIRVIEAGRTIGG 38 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--C-CC-------CeEEEEeCCCCCCC
Confidence 78999999999999887653 1 24 35777877654433
No 381
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=55.72 E-value=12 Score=38.70 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999988764 354 57778875
No 382
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=55.62 E-value=13 Score=39.94 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-----g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-----G-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEccC
Confidence 457999999999999999888642 4 367888875
No 383
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=55.56 E-value=15 Score=38.41 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+|+|+|||-+|+.+|..+.+. | .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999888653 4 368888885
No 384
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=55.35 E-value=33 Score=36.66 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHH
Q 010044 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
..++.-....|...|++|+|-+.-..++++.|.+
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 4444555566778899999999989999999986
No 385
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=55.32 E-value=16 Score=38.32 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
..+|+|+|||.||+..|-.|.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~ 24 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA 24 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc
Confidence 46799999999999999888663
No 386
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=55.30 E-value=12 Score=42.50 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC-ccccCCc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRK 383 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G-Li~~~R~ 383 (519)
++..|+|+|||.||+..|-.|.+. .|+ ++.++|++. ....+|.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA 74 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQA 74 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCee
Confidence 356899999999999999988752 265 467788763 3333443
No 387
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=55.22 E-value=14 Score=44.37 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.+.||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeC
Confidence 3579999999999999999999863 53 57778875
No 388
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=55.19 E-value=40 Score=35.38 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=57.5
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhcc-ccCCCCCHHH
Q 010044 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (519)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~-~~~~~~~L~e 405 (519)
+++||+|.|| |-.|..+++.|.+. | -+++.+|+..- ..+... ...+.. +..+..++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-----G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-----G-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-----C-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 99999999998762 5 26888886431 001110 111211 1111233555
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEEcC
Q 010044 406 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 406 av~~vkptvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 446 (519)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 4899998765321 0 2355777777666678988644
No 389
>PRK10262 thioredoxin reductase; Provisional
Probab=55.12 E-value=11 Score=38.36 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.0
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
-+..+|||+|||.||+..|..+.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999998876
No 390
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=55.10 E-value=37 Score=36.55 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=79.7
Q ss_pred HHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCC
Q 010044 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN 402 (519)
Q Consensus 323 k~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~ 402 (519)
|.|..=+....+|+.|=|-.|-|+|.-|... | .++++ |+- |.+..-|. |-+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~-----g-------~~Viv-------TEi--DPI~ALQA--aMeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQALKGF-----G-------ARVIV-------TEI--DPICALQA--AMEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHHhhc-----C-------cEEEE-------ecc--CchHHHHH--HhhccEeee
Confidence 4566678888999999999999999877432 3 34443 221 22332221 113334579
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC------------CCC-CCCCCHH-HHhcccCCcEE
Q 010044 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN------------PTS-QSECTAE-EAYTWSKGRAI 468 (519)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN------------Pt~-~~E~tpe-~A~~wt~G~ai 468 (519)
|.||++. .||++-+++...+++.+..+.|. +.-|+--+-- |.. .--+.|+ |=|.|.+||.|
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~i 337 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHI 337 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEE
Confidence 9999998 99999999999999999999997 5666654322 111 1112222 66888999987
Q ss_pred E
Q 010044 469 F 469 (519)
Q Consensus 469 f 469 (519)
+
T Consensus 338 I 338 (434)
T KOG1370|consen 338 I 338 (434)
T ss_pred E
Confidence 6
No 391
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=55.07 E-value=14 Score=39.76 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 899999999999999988763 5 479999975
No 392
>PRK07538 hypothetical protein; Provisional
Probab=54.99 E-value=15 Score=38.80 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (519)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999988765
No 393
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=54.95 E-value=22 Score=36.59 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=59.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCC-CCHH
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL 404 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~-~~L~ 404 (519)
|..++ +++|+||=--|.+||+.|... + +|+++|-+ +|-+.+..+.-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 45555 999999999999999988542 2 79999864 2222332111011 1111
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
+ + .++||++|=++|-||+ +++.++.. .|=+|=.=||.
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~ 128 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK 128 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC
Confidence 1 1 2379999999999986 99998776 36677778888
No 394
>PRK12831 putative oxidoreductase; Provisional
Probab=54.95 E-value=15 Score=39.97 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 467999999999999999998763 53 57778763
No 395
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.91 E-value=48 Score=35.62 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=60.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh--chhhccccCCCCCHHHHh
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 407 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~--k~~fa~~~~~~~~L~eav 407 (519)
+|-.|+|+|.|-.|.++|++|.+ .|. ++...|.+-- ....+.|... ..++... ..+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~~---~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRCG---GFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEeC---CCC-hHHh
Confidence 57789999999999999888875 363 5778886421 0000112110 0011000 011 2334
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCC
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGS 473 (519)
+ ++|++|=.++.+ .-.+++.++.. ...||+ +.+|.-+ .....+.|--|||
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~~----~~~~~~~I~VTGT 116 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELFA----REAKAPVIAITGS 116 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHHH----HhcCCCEEEEECC
Confidence 4 378887555554 34677776654 356776 2233322 2234577888997
No 396
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=54.76 E-value=15 Score=39.57 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+||+|||+||+..|..+.+. | +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999999988763 5 478899975
No 397
>PRK14694 putative mercuric reductase; Provisional
Probab=54.75 E-value=16 Score=39.55 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+-.++|+|||+||+..|..+.+. | +++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999998763 4 478899974
No 398
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=54.45 E-value=37 Score=32.68 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=26.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 6677777777754 263 57777764
No 399
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=54.39 E-value=14 Score=38.64 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999999887631 13 478899886
No 400
>PRK06138 short chain dehydrogenase; Provisional
Probab=54.34 E-value=29 Score=33.07 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=23.8
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|++.+++|.|| |.-|..+|+.+++ .| -++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CC-------CeEEEecCC
Confidence 367789999997 4556666666543 25 257877764
No 401
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=54.31 E-value=14 Score=44.69 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-..+||+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 3568999999999999999999763 53 57788865
No 402
>PRK11445 putative oxidoreductase; Provisional
Probab=54.21 E-value=15 Score=37.98 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (519)
.|+|+|||.||...|..|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988765
No 403
>PRK06545 prephenate dehydrogenase; Validated
Probab=54.05 E-value=41 Score=35.46 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
.||.|+|+|..|.++|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999999663
No 404
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=53.99 E-value=18 Score=41.81 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999999763 53 68888874
No 405
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=53.96 E-value=8.1 Score=41.27 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (519)
++|+|+|||-||+..|..|.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 3799999999999999999764
No 406
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.90 E-value=12 Score=39.08 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999988765 364 56677765
No 407
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.86 E-value=14 Score=39.40 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999998763 4 468899975
No 408
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=53.78 E-value=16 Score=41.67 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=27.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...||+|+|||.||+..|..+... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999998753 53 57778764
No 409
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=53.54 E-value=26 Score=36.44 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=64.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
+||.++|.|+.|-.|++.|... +. +..+-.++.|+.. ++ .+.++...+.+.+|.+.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999988542 11 0123344555531 11 1223333345678888643 36
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEE-E---EcCCCCCCCCCCHHHHhcccCCcEEEEcC
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLI-L---ALSNPTSQSECTAEEAYTWSKGRAIFASG 472 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPII-F---aLSNPt~~~E~tpe~A~~wt~G~aifAsG 472 (519)
||+++=+.++. ++.+-..+.+.+ .+.+| + ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~--g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA--GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc--CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988854 555444444442 23333 2 244433 122222333335667888887
No 410
>PRK12829 short chain dehydrogenase; Provisional
Probab=53.38 E-value=32 Score=33.04 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=24.2
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+++.+++|.|| |..|..+++++++ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 4555555555543 353 58888763
No 411
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=53.34 E-value=52 Score=33.14 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.||.|+|.|..|..+|+.+... |. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 4799999999999999999752 42 56777764
No 412
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=53.30 E-value=16 Score=39.03 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
.|||+|||.||+..|..+.+. | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999988753 5 47889998
No 413
>PLN02427 UDP-apiose/xylose synthase
Probab=53.27 E-value=41 Score=35.03 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=51.3
Q ss_pred HHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh-------chhh
Q 010044 322 LKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-------KKPW 393 (519)
Q Consensus 322 lk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~-------k~~f 393 (519)
+.+.||+++-.||+|.|| |-.|..+++.|++. .| .+++.+|+.. .+...+.+. +.+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 456799999999999996 99999999888763 12 3677787531 110111100 1122
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCC
Q 010044 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGV 421 (519)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~ 421 (519)
.+ +-.+...+.+++++ +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 22 11222457788876 8999977764
No 414
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=53.22 E-value=21 Score=37.06 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=28.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-..++|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACL-----G-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEeCC
Confidence 3457999999999999999988652 4 468888875
No 415
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=53.14 E-value=17 Score=41.34 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
..|+|+|||.+|+.+|-.|.+. |. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----GW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 5799999999999999998753 53 689999874
No 416
>PRK10015 oxidoreductase; Provisional
Probab=53.06 E-value=15 Score=39.53 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
-.|+|+|||.||...|-.+.+. |+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~-----G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARA-----GL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecCC
Confidence 4799999999999999888653 64 466777653
No 417
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=52.72 E-value=17 Score=39.23 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34699999999999999988763 5 579999975
No 418
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=52.54 E-value=17 Score=39.06 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=23.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
|||+|+|.||+..|-..++. | .++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~-----G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA-----G-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT-----T-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHHC-----C-------CEEEEEECCccC
Confidence 79999999999999877653 6 478899988765
No 419
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.54 E-value=1.7e+02 Score=34.18 Aligned_cols=92 Identities=16% Similarity=0.071 Sum_probs=50.3
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC--------CCCCHHHHhcccCCcEEEEcCCCCCccc
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 479 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------~E~tpe~A~~wt~G~aifAsGSPf~pv~ 479 (519)
+.++|+.+|..++.. +.-.-+.+...+-+|=|.+=.-||... .+-|-+++.++... ..-..| ..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~~g--k~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA-LAKKQG--KTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH-HHHHcC--CceEE
Confidence 446799999877754 544444444445566688888898742 22333333332100 000122 23444
Q ss_pred cCCEEecccCccceeechhhhHHHHHhC
Q 010044 480 YNGKVFVPGQANNAYIFPGFGLGLVISG 507 (519)
Q Consensus 480 ~~G~~~~p~Q~NN~~iFPGiglG~l~~~ 507 (519)
. .+.||.+=|-+.+|-+-=++.+..
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~~lv~ 512 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAARLLL 512 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHHHHHH
Confidence 4 257777878777776655554443
No 420
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=52.47 E-value=18 Score=38.75 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999988653 4 578889983
No 421
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=52.43 E-value=58 Score=32.88 Aligned_cols=86 Identities=12% Similarity=0.256 Sum_probs=51.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
||+|.|| |-.|..+++.|.+. | +++.+|+..- .+.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-----g--------~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-----G--------NLIALDVHST--------------DYCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-----C--------CEEEeccccc--------------cccCCCCCHHHHHHHHHhcC
Confidence 7899997 99999998877542 3 3566665311 01011122235777888888
Q ss_pred CcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEEcC
Q 010044 412 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 412 ptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 446 (519)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999766543221 233555555544 46887544
No 422
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=52.40 E-value=17 Score=40.49 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+-.|+|+|+|..|++||..|... |+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999998763 64 68888875
No 423
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=52.30 E-value=97 Score=33.05 Aligned_cols=138 Identities=13% Similarity=0.180 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeec-CCcchhHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 010044 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (519)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g-~~l~d~riv~~GA 339 (519)
+.+.+..+. +| .++++ +-... +.+.+.+.+| .++||+|- |-..=-+=+||=++.-.+..| +++++.+|.++|-
T Consensus 90 l~Dtarvls-~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVLG-RM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHHH-Hh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCC
Confidence 444554444 35 44333 33332 2233344444 47999993 222334556777777777766 4799999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cC---CCCCHHHHhcccCCcEE
Q 010044 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTIL 415 (519)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~---~~~~L~eav~~vkptvL 415 (519)
+.- .+++-++.+..+ .|+ ++.++--+|+.-.+ + +-..-+.+++. .. -..++.|++++ +||+
T Consensus 165 ~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvv 229 (336)
T PRK03515 165 ARN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFI 229 (336)
T ss_pred CcC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 632 467777666554 364 68888877773321 1 11111233332 11 13689999997 9999
Q ss_pred Eecc
Q 010044 416 IGSS 419 (519)
Q Consensus 416 IG~S 419 (519)
.-.+
T Consensus 230 ytd~ 233 (336)
T PRK03515 230 YTDV 233 (336)
T ss_pred EecC
Confidence 9864
No 424
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=52.24 E-value=17 Score=37.36 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888753 5 357888875
No 425
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=52.20 E-value=16 Score=44.24 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...+|+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-----G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-----GH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecc
Confidence 357999999999999999998753 53 57788865
No 426
>PRK06841 short chain dehydrogenase; Provisional
Probab=52.14 E-value=27 Score=33.51 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=25.5
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467889999997 6666667766654 353 57788774
No 427
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=52.13 E-value=34 Score=35.03 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=56.8
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-ccCCCCCHHHH
Q 010044 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (519)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~~~~~L~ea 406 (519)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999986 78888888887653 31 136888876422100000001000111211 22222457777
Q ss_pred hcccCCcEEEeccCCCCC----C------------CHHHHHHHHcCCCCcEEEEcC
Q 010044 407 VKVIKPTILIGSSGVGRT----F------------TKEVIEAMASFNEKPLILALS 446 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 446 (519)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 875 8999977654311 1 234566666555567888543
No 428
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=52.13 E-value=16 Score=40.25 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=44.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-c--C-CCCCHHHHhc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H--E-PVNNLLDAVK 408 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~--~-~~~~L~eav~ 408 (519)
||+++|||+.|+-+++.|+.+ |+...+ ..+|.++|.+=+ ..+ +|+.+ -+.+. + . ......++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D~I-e~S---NLnRQ--fLf~~~dIGk~Ka~vAa~~l~ 68 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMDNI-EKS---NLNRQ--FLFRPHDVGKPKSEVAAAAVK 68 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCCCc-ccc---ccCcC--ccCChhHcCcHHHHHHHHHHH
Confidence 689999999999999999876 542111 268999998622 221 24321 12221 0 1 1124566677
Q ss_pred ccCCcEEEec
Q 010044 409 VIKPTILIGS 418 (519)
Q Consensus 409 ~vkptvLIG~ 418 (519)
...|++-|=.
T Consensus 69 ~lNp~v~I~a 78 (435)
T cd01490 69 AMNPDLKITA 78 (435)
T ss_pred HHCCCCEEEE
Confidence 7777765533
No 429
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.12 E-value=16 Score=40.04 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.|||+|+|.+|.++|..+... |+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 4799999999999999999763 64 58888876
No 430
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=52.03 E-value=14 Score=38.29 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~ 353 (519)
+|+|+|||.||+..|-.|.+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999888753
No 431
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=52.00 E-value=58 Score=32.01 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=51.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 010044 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (519)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k----~~fa~-~~~~~~~L~ea 406 (519)
||+|.|| |..|..+++.|.+. | .+++++|+. .......+.... -.+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~-----g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES-----G-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC-----C-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5777775 88888888877652 4 356667642 111011111110 01111 22223457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEE
Q 010044 407 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 444 (519)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8766899998655432111 2355677766555677773
No 432
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=51.97 E-value=16 Score=40.70 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.|+|+|||.||+..|..+.+. | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999888652 4 4688888753
No 433
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=51.94 E-value=87 Score=28.97 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (519)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999876 6888888764 444456665444444
No 434
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=51.75 E-value=17 Score=38.08 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999987754 365 46677764
No 435
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=51.63 E-value=56 Score=35.46 Aligned_cols=98 Identities=18% Similarity=0.385 Sum_probs=65.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCC------chhchhhccc--c-CC--
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL------QHFKKPWAHE--H-EP-- 399 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l------~~~k~~fa~~--~-~~-- 399 (519)
-.||.++|+|.=|..||+++-.-.. +.+.-+..=++|+++.. ..++..+| +++.-+|-.. . +.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nvv 94 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPENVV 94 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCCCeE
Confidence 3799999999999999999977532 33444455689998864 22211112 1222334321 1 22
Q ss_pred -CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCC
Q 010044 400 -VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 438 (519)
Q Consensus 400 -~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~e 438 (519)
..+|.|+++. +|+||=+ .|-.|+..+++.+..+-+
T Consensus 95 Av~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk 130 (372)
T KOG2711|consen 95 AVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVK 130 (372)
T ss_pred ecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccC
Confidence 2689999998 9999843 466899999999986543
No 436
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=51.54 E-value=16 Score=35.31 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=24.9
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++.+.+++|.|| |.-|..||+.+++ .|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 467889999997 5556666666654 253 57788764
No 437
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=51.51 E-value=33 Score=36.80 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc-cCCCCCHHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLD 405 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~~~~~~L~e 405 (519)
..|++.+|.|+|-|+-|.++|+.+... |+ ++++.|+.+ .+ .+ .+.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357899999999999999999998764 65 466666532 11 11 1111 111247999
Q ss_pred HhcccCCcEEE
Q 010044 406 AVKVIKPTILI 416 (519)
Q Consensus 406 av~~vkptvLI 416 (519)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9987 88877
No 438
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=51.50 E-value=18 Score=37.50 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999987754 364 577888764
No 439
>PLN02568 polyamine oxidase
Probab=51.50 E-value=9.2 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999874
No 440
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.41 E-value=50 Score=31.64 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.1
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.++..+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356678999998 6667777777654 353 57777764
No 441
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=51.31 E-value=19 Score=39.45 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...+|+|+|||.||+..|..|... |. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-----g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-----GH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 347999999999999999888752 53 57888764
No 442
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=51.25 E-value=20 Score=37.78 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (519)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999987765
No 443
>PRK14852 hypothetical protein; Provisional
Probab=51.11 E-value=13 Score=44.79 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
++|+..||+|+|+|..|..||+.|+.+ |+ .+|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 478999999999999999999999875 75 789999986
No 444
>PRK08219 short chain dehydrogenase; Provisional
Probab=50.92 E-value=65 Score=30.06 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=39.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchh-----hcc-ccCCCCCHH
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAH-EHEPVNNLL 404 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~-----fa~-~~~~~~~L~ 404 (519)
.+++|.|| |..|..+++.|++. .+++++|++. +.+....+. +.+ +..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47888887 66666666666431 3577787741 111111111 111 112224567
Q ss_pred HHhccc-CCcEEEeccCCC
Q 010044 405 DAVKVI-KPTILIGSSGVG 422 (519)
Q Consensus 405 eav~~v-kptvLIG~S~~~ 422 (519)
++++.+ +.|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999887754
No 445
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=50.89 E-value=12 Score=32.35 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
+|++.++||+|+|..|..=+++|+++ | -++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999999888888753 4 4677777754
No 446
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=50.86 E-value=24 Score=38.39 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=37.3
Q ss_pred HHcCCCceeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEe
Q 010044 295 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (519)
Q Consensus 295 ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (519)
+|-.....+.|=..||+ .++++++++|.|| |..|..+|+.+.+ .|. +++++|
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l~ 209 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVALT 209 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEe
Confidence 45566788999888888 2467789999997 5556666666543 253 567777
Q ss_pred cC
Q 010044 374 SK 375 (519)
Q Consensus 374 s~ 375 (519)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 447
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.85 E-value=89 Score=29.25 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCC
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSN 447 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 447 (519)
+-|++|++|..| -|+++++.+. +...-|+|. ++|
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~-IT~ 136 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIA-LTG 136 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 479999999877 6999999885 333445554 444
No 448
>PRK05868 hypothetical protein; Validated
Probab=50.78 E-value=19 Score=37.72 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=18.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 010044 332 HRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (519)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999988765
No 449
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=50.64 E-value=23 Score=38.56 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=68.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchh---chhhcc-ccCCCCCHHHHh
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 407 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~---k~~fa~-~~~~~~~L~eav 407 (519)
.+||++|||-.|..+|..|++- |- .+|.+.|+. .+..+.+... +..... +..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999999763 31 589988873 1111111111 111221 334456899999
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-cEEEEcC
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RAIFASG 472 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G-~aifAsG 472 (519)
++ .|+.|-+- ++-++..++++-.+. .-+ ..-.||=.....---++|.+ .| .+|..+|
T Consensus 67 ~~--~d~VIn~~--p~~~~~~i~ka~i~~-gv~-yvDts~~~~~~~~~~~~a~~--Agit~v~~~G 124 (389)
T COG1748 67 KD--FDLVINAA--PPFVDLTILKACIKT-GVD-YVDTSYYEEPPWKLDEEAKK--AGITAVLGCG 124 (389)
T ss_pred hc--CCEEEEeC--CchhhHHHHHHHHHh-CCC-EEEcccCCchhhhhhHHHHH--cCeEEEcccC
Confidence 98 69988765 446888888776542 223 33345422212222344443 24 4555566
No 450
>PRK06182 short chain dehydrogenase; Validated
Probab=50.54 E-value=27 Score=34.20 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=39.6
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhc-cccCCCCCHHHHh
Q 010044 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAV 407 (519)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa-~~~~~~~~L~eav 407 (519)
+..+++|.|| |-.|..+|+.+.+ .| -++++++++- ++.+.+......+. -+..+..++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 3568999997 5556666666643 25 3577776641 11000111111111 1222223455556
Q ss_pred ccc-----CCcEEEeccCCC
Q 010044 408 KVI-----KPTILIGSSGVG 422 (519)
Q Consensus 408 ~~v-----kptvLIG~S~~~ 422 (519)
+.+ ++|++|=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 544 799999877643
No 451
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=50.39 E-value=18 Score=39.82 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.3
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (519)
..+|+|+|||.+|+..|-.|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 452
>PRK06834 hypothetical protein; Provisional
Probab=50.37 E-value=21 Score=39.29 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.+..|+|+|||.+|+..|-.|.+. |+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecCC
Confidence 457899999999999999998763 65 467777654
No 453
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.37 E-value=20 Score=39.15 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
.+...||+|+|+|-+|.++|+.+...
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHC
Confidence 35668999999999999999998753
No 454
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=50.36 E-value=23 Score=36.15 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=31.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GL 377 (519)
+..||+++|+|.-|.-+++.|+.....-.++..... -+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g-~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGG-LAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCC-CEEEEECCCEE
Confidence 568999999999999999999875210001110000 18999998733
No 455
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.35 E-value=78 Score=32.63 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=24.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs 374 (519)
-.+++|+|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak-~----~G~------~~vi~~~~ 220 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGAR-I----RGA------SRIIGVDL 220 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcC
Confidence 45789999999988887665543 2 353 46777765
No 456
>PRK09186 flagellin modification protein A; Provisional
Probab=49.89 E-value=18 Score=34.59 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=22.4
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 45788999997 4555556666653 353 46777653
No 457
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=49.89 E-value=49 Score=37.07 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=62.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc-ccC---CCCCHHHHhc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHE---PVNNLLDAVK 408 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~-~~~---~~~~L~eav~ 408 (519)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ ..+....++. ... ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 689999999999999999763 64 57777762 222 2222222222 111 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 010044 409 VI-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (519)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (519)
.+ +|+++| ++-..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 588888 444455566677655443 34677999999854
No 458
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=49.85 E-value=45 Score=36.81 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=46.5
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc---
Q 010044 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--- 395 (519)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~--- 395 (519)
...+......|+..|++++|.|+-...++.++. +.|+.. .++-. .....++.....+....
T Consensus 323 ~~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~-----ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~ 386 (466)
T TIGR01282 323 DAVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFE-----DLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTL 386 (466)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHH-----HCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeE
Confidence 333444567899999999998876666666543 358732 11110 00001111111111110
Q ss_pred --ccCCCCCHHHHhcccCCcEEEeccC
Q 010044 396 --EHEPVNNLLDAVKVIKPTILIGSSG 420 (519)
Q Consensus 396 --~~~~~~~L~eav~~vkptvLIG~S~ 420 (519)
+..+...|++.++..|||++||-|-
T Consensus 387 i~~~~d~~el~~~i~~~~pDl~ig~~~ 413 (466)
T TIGR01282 387 IYDDVTHYEFEEFVEKLKPDLVGSGIK 413 (466)
T ss_pred EeeCCCHHHHHHHHHHhCCCEEEecCC
Confidence 1122246888899999999998774
No 459
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=49.64 E-value=19 Score=38.78 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
+++|+|||-+|.-||+.+.+ .| |++.+||+.--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994443 34 778888775444
No 460
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=49.61 E-value=19 Score=38.51 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
+-.++|+|||+||+..|..+.+. | +++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 35699999999999999988763 5 5788999853
No 461
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=49.24 E-value=1.4e+02 Score=29.33 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.5
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
.++.+.++. +|++|..|... .|.--++++|+. ..|+|.
T Consensus 254 ~~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a~--G~PvI~ 291 (360)
T cd04951 254 DDIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMAC--ELPVVA 291 (360)
T ss_pred ccHHHHHHh--hceEEeccccc-CCChHHHHHHHc--CCCEEE
Confidence 346677776 89999888754 577889999994 789985
No 462
>PRK06126 hypothetical protein; Provisional
Probab=49.15 E-value=20 Score=39.45 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
.+.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45789999999999999988865 365 467777653
No 463
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=49.11 E-value=24 Score=36.06 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi 378 (519)
...+|+|+|+|-+|+.+|-.|.+. |. ++.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 357899999999999999988764 52 78888876653
No 464
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.10 E-value=47 Score=33.67 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=59.0
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHH
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ea 406 (519)
...+-.++||+|+=--|..+|++|.++ .++.++|-+ ++.+.|....-....+.--
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~------------p~~r~~lp~~v~Fr~~~~~ 95 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIH------------PFMRGFLPNNVKFRNLLKF 95 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCC------------HHHHhcCCCCccHhhhcCC
Confidence 344567899999999999999888542 578888863 2222232221111112111
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 010044 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (519)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (519)
+++ .-|++|-+++.|| .++|.++.. .|=+|-.-||++
T Consensus 96 ~~G-~~DlivDlTGlGG-~~Pe~L~~f-----np~vfiVEdP~g 132 (254)
T COG4017 96 IRG-EVDLIVDLTGLGG-IEPEFLAKF-----NPKVFIVEDPKG 132 (254)
T ss_pred CCC-ceeEEEeccccCC-CCHHHHhcc-----CCceEEEECCCC
Confidence 222 3488999999886 788888765 466777888884
No 465
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.09 E-value=21 Score=39.07 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
++++||+|+|.|-.|.++|++|...
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHc
Confidence 5678999999999999999999763
No 466
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=48.93 E-value=49 Score=34.49 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=53.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEec-------CCccccCCccCCchhchhhccccCCCCCHH
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS-------KGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs-------~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~ 404 (519)
.||.|+|||+.|.-.|-.|.++ |-+ =.+|.-++ +||...+-.. +...... ..+-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-----g~~-----V~~~~R~~~~~~l~~~GL~i~~~~~------~~~~~~~--~~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-----GHD-----VTLLVRSRRLEALKKKGLRIEDEGG------NFTTPVV--AATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----CCe-----EEEEecHHHHHHHHhCCeEEecCCC------ccccccc--cccCh
Confidence 4899999999999999888775 410 12333333 2665554321 0011100 01111
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCc-EEEEcCCCCCCCC
Q 010044 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNPTSQSE 453 (519)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP-IIFaLSNPt~~~E 453 (519)
+... ++|++| ++... -.++++++.+..+.... +|..|-|=-..-|
T Consensus 63 ~~~~--~~Dlvi-v~vKa-~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 63 EALG--PADLVI-VTVKA-YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred hhcC--CCCEEE-EEecc-ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 1111 466665 33222 57788888877554333 5666777665555
No 467
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=48.90 E-value=35 Score=36.81 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=61.1
Q ss_pred eEEEeCcchHHHH-HHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhcccC
Q 010044 333 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (519)
Q Consensus 333 riv~~GAGsAg~G-IA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~vk 411 (519)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5889999999998 9999875 363 57788864211 1111211111110 01 11 12343 3
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc-CCcEEEEcCCCCCccccCCEEe
Q 010044 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGKVF 485 (519)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt-~G~aifAsGSPf~pv~~~G~~~ 485 (519)
+|.+|=-++.+ --++++.++.. ...||+ +.+|. ++++. +.+.|-.||| ||||-
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT-------nGKTT 112 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT-------HGKTT 112 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC-------CChHH
Confidence 88887555555 45677777665 356775 22333 22332 3467788997 77754
No 468
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=48.79 E-value=18 Score=39.57 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+||||+|+|-+|+..|..+.... . .-+|.++|++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999997642 1 1368888875
No 469
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=48.79 E-value=18 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999988854 25 467888876
No 470
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.76 E-value=60 Score=31.00 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=91.4
Q ss_pred hhcCCCcccccccccchHHHHHhcCCCCCeeEEEEecC--ceeecCCCCCCC--ccccchhhhhhHhhhcCCCCCceeeE
Q 010044 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 228 (519)
Q Consensus 153 i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~Ly~a~gGI~P~~~lPI 228 (519)
+-+++.|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+..+-..-.+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46779999999999988888888888888988887555 111222223333 36666677776666654 445
Q ss_pred EeecCCCccccccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeee---eecCCCccHHHHHHHHcCCCceeec
Q 010044 229 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTTHLVFND 305 (519)
Q Consensus 229 ~LDvGTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq---fEDf~~~~af~iL~ryr~~~~~FnD 305 (519)
++=.|..+ .....+.++-|.+++++ ++.-.++. ..+.....+++..+++-...+ -|
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 54444321 12233457778888887 64322222 236777777766665532222 11
Q ss_pred CCcchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 010044 306 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (519)
Q Consensus 306 DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 339 (519)
=|=.+....+-|++.|++-.|+ -.+..++-+|.
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~-~~~~~v~g~d~ 217 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR-AGKVIVVGFDG 217 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC-TTTSEEEEEEC
T ss_pred EEEeCCChHHHHHHHHHHHcCC-cccceeecCCC
Confidence 1122223444477888888887 22333444443
No 471
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=48.56 E-value=21 Score=39.39 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
.+.+|+|+|||.+|+..|..|.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988865
No 472
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=48.43 E-value=50 Score=39.19 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=66.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH---HHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc--cCCCCCHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLL 404 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~---~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~--~~~~~~L~ 404 (519)
...+|.++|-|..|.+++++|.+. +.++.|+.. +=.-++||++.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 347899999999999999999763 222234321 123467999988877642222222223221 12234567
Q ss_pred HHhcccCCc--EEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 010044 405 DAVKVIKPT--ILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (519)
Q Consensus 405 eav~~vkpt--vLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (519)
|.+....++ |+|=+++.. -......+++. +.+.+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 777766665 999888633 34556677776 3566665
No 473
>PRK13748 putative mercuric reductase; Provisional
Probab=48.39 E-value=20 Score=39.55 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=27.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+-.++|+|||+||+..|..+.+. | +++.++|++
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 56799999999999999998763 5 578899975
No 474
>PRK07190 hypothetical protein; Provisional
Probab=48.33 E-value=23 Score=38.99 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=25.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 3579999999999998876654 364 467777653
No 475
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=48.33 E-value=16 Score=44.32 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
++|.+.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568899999999999999999999876 75 7899999874
No 476
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=47.51 E-value=1e+02 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=29.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+.++||+++|-|-.|+++|+.|.+. | -++++.|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 34589999999999999999999763 5 367888864
No 477
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.40 E-value=21 Score=41.46 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=50.0
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC--------CCCCCHHHHhcccCCcEEEEcCCCCCccc
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFDPFE 479 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~~E~tpe~A~~wt~G~aifAsGSPf~pv~ 479 (519)
+.++|+++|..++.. ++-.-+.+..++-+|=|.+=..||.. ..+-|.++.+++... |+..-=..||.
T Consensus 416 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~pv~ 490 (715)
T PRK11730 416 QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKTPIV 490 (715)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCceEE
Confidence 446799999877753 55444444444555668888999863 233344444433110 11111134555
Q ss_pred cCCEEecccCccceeechhhhHHH
Q 010044 480 YNGKVFVPGQANNAYIFPGFGLGL 503 (519)
Q Consensus 480 ~~G~~~~p~Q~NN~~iFPGiglG~ 503 (519)
.+ +.||-.=|-..+|-+-=++
T Consensus 491 v~---d~pGfv~nRi~~~~~~ea~ 511 (715)
T PRK11730 491 VN---DCPGFFVNRVLFPYFAGFS 511 (715)
T ss_pred ec---CcCchhHHHHHHHHHHHHH
Confidence 42 6788888888888665443
No 478
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.22 E-value=20 Score=37.36 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 010044 333 RFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (519)
+|+|+|||.+|+..|-.|.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 68999999999999988765
No 479
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=47.18 E-value=16 Score=36.27 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=24.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccc
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~ 379 (519)
+||+|+|+||.-+|..|.+. | ..++.|+.+-+...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 78999999999999988642 2 25788887765443
No 480
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.10 E-value=43 Score=36.26 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchh-----
Q 010044 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----- 392 (519)
Q Consensus 318 ll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~----- 392 (519)
+..++.-....|+..|++++|.++-...+++++. +.|+. +..+ |.-.... +.....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~-----elGme-------vv~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYE-----DLGME-------VVGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-----HCCCE-------EEEE---EeecCCH-HHHhhHHhhcCCce
Confidence 4556666678899999999987765566665443 35763 2211 1000000 001111100
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccC
Q 010044 393 WAHEHEPVNNLLDAVKVIKPTILIGSSG 420 (519)
Q Consensus 393 fa~~~~~~~~L~eav~~vkptvLIG~S~ 420 (519)
..-+..+...+++.++..+||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1111122346888999999999999774
No 481
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=47.00 E-value=1.3e+02 Score=31.36 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCceeecC-CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 010044 289 AFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (519)
Q Consensus 289 af~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~ 367 (519)
+.+.+.+| .++||+|-+ -..=-.=+|+=++.-.+..| .|++.||.++|-.. .+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 34444454 468999942 22223456777776666655 49999999999863 478887777665 464
Q ss_pred cEEEEecCCccccCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 010044 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (519)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~l~~~k~~fa~~-~---~~~~~L~eav~~vkptvLIG~S 419 (519)
++.++-.+++.-+. .....-+.+++. . ....++.+++++ +||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888877763321 111122233332 1 123689999997 99998764
No 482
>PLN02852 ferredoxin-NADP+ reductase
Probab=46.96 E-value=13 Score=41.45 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=30.7
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...+-...||+|+|||.||+..|..|.+.. .| -+|.|+|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 334455679999999999999999997531 24 368888876
No 483
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=46.73 E-value=1.1e+02 Score=30.87 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=52.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 010044 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (519)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (519)
.||.++|+ |-.|-.+++.+.+. .++ +=..++|++. ++.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99999998877542 122 3455677752 111111 111 1112367888776
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (519)
++|++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888533 336666655543 5777755
No 484
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.70 E-value=23 Score=38.43 Aligned_cols=103 Identities=13% Similarity=0.148 Sum_probs=57.8
Q ss_pred HHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhcc----
Q 010044 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 395 (519)
Q Consensus 320 ~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~---- 395 (519)
.++.-....|...|+.|+|-..-.+++++.|.+ .|+.. .. +++........+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCC
Confidence 334444456788999999988899999999975 37632 11 1111111111111111111
Q ss_pred -------ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 010044 396 -------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (519)
Q Consensus 396 -------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (519)
...+...+.+.++..+||++||-|.. +.+|+...-|.| ..+.|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 11223467888899999999997741 233433356754 566665
No 485
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=46.53 E-value=50 Score=31.22 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 318 ll~Alk~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.+.++...+.--.+++++|.|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 33445555544578899999999877766655433 24 357777664
No 486
>PRK06199 ornithine cyclodeaminase; Validated
Probab=46.50 E-value=58 Score=35.12 Aligned_cols=84 Identities=18% Similarity=0.140 Sum_probs=54.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc------cCCCCCH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE------HEPVNNL 403 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~------~~~~~~L 403 (519)
.-.++.|+|+|.-+...++.++... .. .++|++.|+. .+ +...+.+.+.+. -....+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~---~~------i~~V~v~~r~----~~---~a~~f~~~~~~~~~~~~~v~~~~s~ 217 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC---PG------IDTIKIKGRG----QK---SLDSFATWVAETYPQITNVEVVDSI 217 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc---CC------ccEEEEECCC----HH---HHHHHHHHHHHhcCCCceEEEeCCH
Confidence 3578999999999888887776531 01 3678888773 11 223333333321 1224789
Q ss_pred HHHhcccCCcEEEeccCC-------CCCCCHHHHH
Q 010044 404 LDAVKVIKPTILIGSSGV-------GRTFTKEVIE 431 (519)
Q Consensus 404 ~eav~~vkptvLIG~S~~-------~g~Ft~evv~ 431 (519)
+|+|+. +||++-+++. ..+|..++++
T Consensus 218 ~eav~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 218 EEVVRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HHHHcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 999987 9999976531 1488888886
No 487
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=46.44 E-value=24 Score=38.77 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5789999999999999999988753 26788877654
No 488
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=46.32 E-value=26 Score=38.20 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=26.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
...||+|+|+|.||+..|..+.+. |. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-----G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-----GV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 567999999999999999888652 53 46677765
No 489
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.27 E-value=26 Score=38.01 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
-.|+|+|||+||+..|..+.+. | +++.++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4689999999999999988663 5 578899974
No 490
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.19 E-value=93 Score=33.27 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=62.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHhccc
Q 010044 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav~~v 410 (519)
.++|+|+|.|-.|.++|+.+.+ .|. +++.+|.+- . .+.. ..+..+. ......+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc--
Confidence 4689999999999998888764 353 588888641 1 1111 1111100 0012222233
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCccccCCEEe
Q 010044 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 485 (519)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGSPf~pv~~~G~~~ 485 (519)
++|++|-..+.+ .-.+.+.++..+. -||| +++. . +-++..+.+.+.|--||| +|||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 379999887766 4566666666543 3432 3321 1 112122224567888998 77754
No 491
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=45.90 E-value=19 Score=41.80 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 010044 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
.-+..+|+|+|||.||+..|-.|.+.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc
Confidence 35668999999999999999888763
No 492
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=45.86 E-value=24 Score=37.37 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
.|+|+|||.||+..|..|.++ |. .+-++|+-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcC
Confidence 489999999999999999764 64 46677764
No 493
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=45.78 E-value=27 Score=37.74 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 010044 331 EHRFLFLGAGEAGTGIAELIALE 353 (519)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~ 353 (519)
+++++|+|||-+|+..|-.|.+.
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~ 23 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKR 23 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC
Confidence 47899999999999999999764
No 494
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=45.37 E-value=27 Score=39.74 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~G 376 (519)
...||+|+|+|.||+..|..|.+. |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999988763 53 477777653
No 495
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=45.37 E-value=31 Score=30.92 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=50.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCc-cCCchh--c-hhhccccCCCCCHHHHhcc
Q 010044 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-DSLQHF--K-KPWAHEHEPVNNLLDAVKV 409 (519)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~-~~l~~~--k-~~fa~~~~~~~~L~eav~~ 409 (519)
|+|+|||+.|.-+|-.|.++ | .++.++++.. -.+... +.+.-. . ....+......+..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADA-- 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH--
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhcc--
Confidence 78999999999999988763 4 4688888865 111110 011000 0 00000000011121223
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCc-EEEEcCCC
Q 010044 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNP 448 (519)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP-IIFaLSNP 448 (519)
-++|++| ++... .=++++++.++.+...- .|+.+-|=
T Consensus 66 ~~~D~vi-v~vKa-~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 66 GPYDLVI-VAVKA-YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp STESEEE-E-SSG-GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCCcEEE-EEecc-cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 3488887 44332 23577888877554442 45556664
No 496
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.37 E-value=30 Score=38.63 Aligned_cols=80 Identities=10% Similarity=0.262 Sum_probs=48.1
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccc---cCCCCC
Q 010044 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNN 402 (519)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~---~~~~~~ 402 (519)
...|...|++|+|-++-.+|+++.|.+.| |+. +..+++. .....+.+.+.-+.+... .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~EL----Gm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILAREM----GIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHhC----CCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 36788999999999999999999997653 873 2233321 010000011111111110 112245
Q ss_pred HHHHhcccCCcEEEecc
Q 010044 403 LLDAVKVIKPTILIGSS 419 (519)
Q Consensus 403 L~eav~~vkptvLIG~S 419 (519)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 78888999999999976
No 497
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=45.21 E-value=81 Score=32.06 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=48.1
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCcc-ccCCccCCch------hchhhcc-ccC
Q 010044 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQH------FKKPWAH-EHE 398 (519)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi-~~~R~~~l~~------~k~~fa~-~~~ 398 (519)
.++..+|+|.|| |-.|..+++.|++. |. +++++|+..-- ...+...+.. .+..|.. +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~-----G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSK-----GY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 466789999996 88999999888763 53 57777664210 0000000100 0111221 222
Q ss_pred CCCCHHHHhcccCCcEEEeccCC
Q 010044 399 PVNNLLDAVKVIKPTILIGSSGV 421 (519)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~ 421 (519)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888889999988765
No 498
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.84 E-value=1.2e+02 Score=32.63 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=60.0
Q ss_pred ccc-ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecCCccccCCccCCchhchhhccccCCCCCHHHHh
Q 010044 329 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (519)
Q Consensus 329 l~d-~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~GLi~~~R~~~l~~~k~~fa~~~~~~~~L~eav 407 (519)
+.. +||.|+|.|-.|++.+++|... .| .-++...|.+=. ....+.|.. ...+.... .+ .+.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~-~~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WN-LEWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CC-hHHh
Confidence 344 6899999999999999998763 22 125778886421 000011211 11111110 01 2234
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCC
Q 010044 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 473 (519)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~wt~G~aifAsGS 473 (519)
.. +|.+|=-++.+ .-.+++.++.+. .-||+ +.+|. ++.+.+.+.|-.|||
T Consensus 67 ~~--~d~vV~SpgI~-~~~p~~~~a~~~--gi~i~-------~~~el----~~~~~~~~~I~VTGT 116 (438)
T PRK04663 67 LE--ADLVVTNPGIA-LATPEIQQVLAA--GIPVV-------GDIEL----FAWAVDKPVIAITGS 116 (438)
T ss_pred cc--CCEEEECCCCC-CCCHHHHHHHHC--CCcEE-------EHHHH----HHhhcCCCEEEEeCC
Confidence 43 78777544554 346677666553 56774 22333 233345678888997
No 499
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.73 E-value=26 Score=42.30 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEecC
Q 010044 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~~~eeA~~~i~lvDs~ 375 (519)
+..||+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 457999999999999999998764 53 57777875
No 500
>PLN02985 squalene monooxygenase
Probab=44.60 E-value=30 Score=38.44 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 010044 330 AEHRFLFLGAGEAGTGIAELIAL 352 (519)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (519)
.+.+|+|+|||.||+..|-.|.+
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~ 64 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK 64 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH
Confidence 34589999999999999988865
Done!