Your job contains 1 sequence.
>010045
MDEYLDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGL
AAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAI
PTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELWL
PTSYEEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKG
EQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHS
IAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGA
VLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKG
LCLMPIALATAISSGKASSSDTISEENKFCFSNGLVQSNSSSASSNSSLPNNGINQMPLN
TNIIIGKPIGESILVNGCNRAVKEERNSQCTARELKPKT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010045
(519 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 554 1.5e-53 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 551 3.0e-53 1
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 468 2.6e-47 2
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 478 1.6e-45 1
UNIPROTKB|Q6K8Y4 - symbol:OJ1695_H09.18 "Basic helix-loop... 390 2.0e-45 2
UNIPROTKB|Q6EPZ6 - symbol:P0014G10.34 "BHLH transcription... 456 3.5e-43 1
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 456 3.5e-43 1
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 439 2.2e-41 1
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 432 1.2e-40 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 431 1.6e-40 1
TAIR|locus:2027809 - symbol:BEE3 "AT1G73830" species:3702... 205 1.5e-18 2
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 204 2.4e-18 2
TAIR|locus:505006688 - symbol:AT5G50915 "AT5G50915" speci... 224 7.9e-18 1
UNIPROTKB|Q84T08 - symbol:OSJNBa0087C10.10 "BHLH transcri... 222 1.3e-17 1
UNIPROTKB|Q6Z2G7 - symbol:P0680A05.9 "Putative bHLH trans... 236 1.6e-17 1
UNIPROTKB|Q6ZCV8 - symbol:P0028A08.20 "Os08g0487700 prote... 229 1.2e-16 1
TAIR|locus:2028804 - symbol:CIB5 "AT1G26260" species:3702... 223 1.3e-16 2
TAIR|locus:2139484 - symbol:CIB1 "AT4G34530" species:3702... 225 1.8e-16 1
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 211 2.2e-16 2
UNIPROTKB|Q84LH4 - symbol:OSJNBb0011H13.2 "Putative Helix... 223 2.4e-16 1
UNIPROTKB|Q75M33 - symbol:P0668H12.5 "BHLH transcription ... 224 2.8e-16 1
TAIR|locus:2079676 - symbol:AT3G07340 "AT3G07340" species... 227 5.5e-16 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 189 5.5e-16 2
UNIPROTKB|Q69WS3 - symbol:OJ1118_E12.15 "Putative bHLH pr... 207 5.6e-16 1
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 207 5.6e-16 1
TAIR|locus:2032990 - symbol:CES "AT1G25330" species:3702 ... 204 1.2e-15 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 224 1.5e-15 1
UNIPROTKB|Q69JJ6 - symbol:OSJNBa0026C08.22 "TA1 protein-l... 222 1.7e-15 1
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 220 2.1e-15 1
TAIR|locus:2115200 - symbol:BEE2 "AT4G36540" species:3702... 212 2.5e-15 1
TAIR|locus:2202867 - symbol:BPEp "AT1G59640" species:3702... 215 3.8e-15 1
TAIR|locus:2201906 - symbol:AT1G10120 "AT1G10120" species... 217 4.2e-15 2
TAIR|locus:2205420 - symbol:AT1G68920 species:3702 "Arabi... 223 4.7e-15 2
UNIPROTKB|Q5VR96 - symbol:P0038C05.31-1 "Os06g0275600 pro... 217 6.5e-15 1
TAIR|locus:2095198 - symbol:AT3G23690 "AT3G23690" species... 214 7.7e-15 1
TAIR|locus:2141573 - symbol:FBH2 "AT4G09180" species:3702... 196 8.7e-15 1
UNIPROTKB|Q84QW1 - symbol:OJ1191_A10.109 "BHLH transcript... 214 1.1e-14 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 206 1.3e-14 1
TAIR|locus:2014144 - symbol:BEE1 "BR enhanced expression ... 194 1.4e-14 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 206 1.9e-14 1
UNIPROTKB|Q8S490 - symbol:rau1 "Transcription factor RAU1... 192 2.4e-14 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 206 2.5e-14 1
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 191 3.0e-14 1
TAIR|locus:2008693 - symbol:FBH1 "AT1G35460" species:3702... 185 4.3e-14 2
UNIPROTKB|Q5N802 - symbol:P0004D12.24 "BHLH transcription... 214 6.2e-14 2
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 208 6.4e-14 1
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 188 6.4e-14 1
UNIPROTKB|Q8GZV6 - symbol:OJ1017C11.10 "Putative uncharac... 214 1.5e-13 2
TAIR|locus:2053766 - symbol:AT2G42300 "AT2G42300" species... 198 3.1e-13 1
TAIR|locus:2059979 - symbol:FBH4 "AT2G42280" species:3702... 191 3.2e-13 2
TAIR|locus:2118934 - symbol:RSL2 "AT4G33880" species:3702... 199 3.4e-13 1
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 180 4.7e-13 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 202 4.9e-13 1
TAIR|locus:4010713915 - symbol:AT4G28811 species:3702 "Ar... 202 5.3e-13 1
TAIR|locus:2156015 - symbol:RSL1 "AT5G37800" species:3702... 193 8.3e-13 1
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 198 9.2e-13 1
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 196 9.3e-13 1
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 197 1.4e-12 1
TAIR|locus:2028957 - symbol:RHD6 "AT1G66470" species:3702... 186 4.8e-12 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 192 7.2e-12 1
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 178 7.9e-12 2
TAIR|locus:2026037 - symbol:FBH3 "AT1G51140" species:3702... 188 8.0e-12 1
UNIPROTKB|Q6Z9R3 - symbol:P0461F06.33 "BHLH protein famil... 176 9.0e-12 1
UNIPROTKB|Q6ZFY4 - symbol:OJ1311_H06.19 "BHLH protein-lik... 183 1.1e-11 1
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 185 2.3e-11 1
UNIPROTKB|Q7XT55 - symbol:OSJNBa0084K20.3 "OSJNBa0076N16.... 164 2.5e-11 1
UNIPROTKB|Q67TR8 - symbol:B1342C04.6 "Basic helix-loop-he... 170 2.9e-11 1
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 180 1.2e-10 2
UNIPROTKB|Q69TX2 - symbol:P0021C04.13 "BHLH protein-like"... 155 2.4e-10 1
UNIPROTKB|Q8W5G3 - symbol:OSJNBa0002J24.23 "Helix-loop-he... 170 4.5e-10 1
UNIPROTKB|Q9ASJ3 - symbol:P0439B06.24 "Putative uncharact... 169 4.7e-10 1
TAIR|locus:2144791 - symbol:HEC3 "AT5G09750" species:3702... 160 4.8e-10 1
TAIR|locus:2155543 - symbol:HEC1 "HECATE 1" species:3702 ... 163 6.5e-10 1
TAIR|locus:2074865 - symbol:HEC2 "AT3G50330" species:3702... 157 7.2e-10 2
TAIR|locus:2076581 - symbol:AT3G57800 "AT3G57800" species... 144 7.9e-10 2
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 171 9.5e-10 1
TAIR|locus:2126856 - symbol:IND "AT4G00120" species:3702 ... 147 1.7e-09 1
UNIPROTKB|Q5MP56 - symbol:BA1 "Uncharacterized protein" s... 154 3.1e-09 1
UNIPROTKB|Q5TKP7 - symbol:OJ1362_G11.11 "Putative unchara... 165 3.8e-09 1
UNIPROTKB|Q8S0N2 - symbol:P0692C11.41-1 "BHLH transcripti... 164 4.3e-09 1
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 163 4.7e-09 1
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 157 4.8e-09 1
UNIPROTKB|Q651K2 - symbol:B1089G05.30 "BHLH protein-like"... 159 6.9e-09 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 144 7.4e-09 1
TAIR|locus:2045263 - symbol:AT2G31730 species:3702 "Arabi... 141 7.7e-09 1
UNIPROTKB|Q75IG3 - symbol:P0499F10.3 "Putative uncharacte... 157 8.0e-09 1
UNIPROTKB|Q657D1 - symbol:P0697C12.40 "BHLH transcription... 163 8.6e-09 1
TAIR|locus:2039094 - symbol:AIB "AT2G46510" species:3702 ... 154 1.1e-08 2
TAIR|locus:2041369 - symbol:PIL1 "phytochrome interacting... 160 1.4e-08 1
TAIR|locus:2089418 - symbol:AT3G21330 "AT3G21330" species... 159 1.4e-08 1
TAIR|locus:2205455 - symbol:BIM2 "AT1G69010" species:3702... 137 1.8e-08 2
TAIR|locus:2115683 - symbol:AT4G05170 "AT4G05170" species... 131 3.6e-08 3
TAIR|locus:505006103 - symbol:AT1G05805 "AT1G05805" speci... 148 1.1e-07 2
TAIR|locus:2098008 - symbol:PIL2 "phytochrome interacting... 149 1.7e-07 1
UNIPROTKB|Q2QMM0 - symbol:LOC_Os12g40710 "Helix-loop-heli... 144 2.6e-07 1
UNIPROTKB|Q7X7U7 - symbol:OSJNBb0091E11.4 "OJ990528_30.9 ... 126 3.2e-07 1
TAIR|locus:2090679 - symbol:AT3G19500 species:3702 "Arabi... 137 3.7e-07 2
UNIPROTKB|Q94HA7 - symbol:OSJNBb0048A17.16 "Os03g0759700 ... 138 4.2e-07 2
UNIPROTKB|Q6ZA99 - symbol:P0431A03.9 "Os08g0432800 protei... 145 4.2e-07 1
TAIR|locus:2179122 - symbol:APTX "APRATAXIN-like" species... 151 4.6e-07 1
WARNING: Descriptions of 70 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 127/203 (62%), Positives = 148/203 (72%)
Query: 261 PTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQEL 320
P V L + + + + G NG K RVRARRGQATDPHSIAERLRREKI++RMK+LQEL
Sbjct: 288 PFVNLSEVLPKGNGSGSAG-NGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQEL 346
Query: 321 VPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSP 380
VPNSNKT+KASMLDEIIDYVKFLQLQVKVLSMSRLGAA AV+PL+T+ Q E S G LSP
Sbjct: 347 VPNSNKTNKASMLDEIIDYVKFLQLQVKVLSMSRLGAAEAVVPLLTETQTE-SPGFLLSP 405
Query: 381 QADQG--------VDISLNSDQ-------IAFEEEVVKLMESNVTKAMQYLQNKGLCLMP 425
++ G V L DQ FE+EVVKLME N+T AMQYLQ+KGLCLMP
Sbjct: 406 RSSSGERQAGAGAVTGGLPGDQPELLDGGAMFEQEVVKLMEDNMTTAMQYLQSKGLCLMP 465
Query: 426 IALATAISSGKASSSDTISEENK 448
+ALA+AIS+ K +SS + E K
Sbjct: 466 VALASAISAQKGTSSAAVRPEKK 488
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 118/169 (69%), Positives = 132/169 (78%)
Query: 274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
AN G + K R RARRGQATDPHSIAERLRREKI+ERMKNLQ LVPNSNK DKASML
Sbjct: 225 ANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASML 284
Query: 334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQA-DQGV-DISLN 391
DEIIDYVKFLQLQVKVLSMSRLGA GAVLPL+ + Q E SLS QG D+ +
Sbjct: 285 DEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPDS 344
Query: 392 SDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSS 440
D AFE+EVVKLME+++ AMQYLQNKGLCLMPIALA+AIS+ K ++
Sbjct: 345 EDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAA 393
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 468 (169.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 104/178 (58%), Positives = 125/178 (70%)
Query: 270 QTASANPTGGCNGT---GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK 326
Q +++ TGG + ++RARRGQATDPHSIAERLRRE+IAERMK LQELVPN NK
Sbjct: 117 QASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK 176
Query: 327 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGV 386
TDKASMLDEIIDYVKFLQLQVKVLSMSRLG A +V I++ A S G + S
Sbjct: 177 TDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISE--AGGSHGNASSAMVGGSQ 234
Query: 387 DISLNSDQIAF-EEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSGKASSSDTI 443
++D + E +V KLME ++ AMQYLQ KGLCLMPI+LATAIS+ S + +
Sbjct: 235 TAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPL 292
Score = 44 (20.5 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 DEYLDHYFSSSSWSDV 17
+++LD FSS+ W V
Sbjct: 27 EDFLDQIFSSAPWPSV 42
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 111/190 (58%), Positives = 131/190 (68%)
Query: 261 PTVGLPS-LQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQE 319
PT+G LQ + + T K RVRARRGQATDPHSIAERLRRE+IAERMK+LQE
Sbjct: 71 PTMGSQEGLQPQGTVSTTSAPVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQE 130
Query: 320 LVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLS 379
LVPN+NKTDKASMLDEII+YV+FLQLQVKVLSMSRLG AG+V P + AEA L+
Sbjct: 131 LVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAGGRLNAL 190
Query: 380 PQADQGVDI------SLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAIS 433
G++ S N + E+ V KLME ++ AMQYLQ KGLCLMPI+LATAIS
Sbjct: 191 TAPCNGLNGNGNATGSSNESLRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAIS 250
Query: 434 SGKASSSDTI 443
S S ++
Sbjct: 251 SSTTHSRGSL 260
>UNIPROTKB|Q6K8Y4 [details] [associations]
symbol:OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000239571 EMBL:AP003975 EMBL:AP004094
EnsemblPlants:LOC_Os02g55250.1 OMA:GQDDFFD Uniprot:Q6K8Y4
Length = 463
Score = 390 (142.3 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 89/143 (62%), Positives = 106/143 (74%)
Query: 305 LRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPL 364
LRRE+IAERMK LQELVPN+NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG A AV PL
Sbjct: 251 LRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPL 310
Query: 365 ITDGQAEAS-KGLSLSPQAD-QGVDISLNSDQIA------FEEEVVKLMESNVTKAMQYL 416
+ + +E++ G + S + + + S N D E++V KLME ++ AMQYL
Sbjct: 311 VANMSSESNGNGNATSSSGNGEAANGSSNGDNNGGGTLRVTEQQVAKLMEEDMGSAMQYL 370
Query: 417 QNKGLCLMPIALATAISSGKASS 439
Q KGLCLMPI+LATAISS +SS
Sbjct: 371 QGKGLCLMPISLATAISSATSSS 393
Score = 104 (41.7 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 264 GLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERL 305
G S A A+ GG + R RARRGQATDPHSIAER+
Sbjct: 188 GSASAAAAAGASSGGGAAAPPRQRQRARRGQATDPHSIAERV 229
>UNIPROTKB|Q6EPZ6 [details] [associations]
symbol:P0014G10.34 "BHLH transcription factor PTF1-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 HOGENOM:HOG000239571 EMBL:AP005784
RefSeq:NP_001175840.1 UniGene:Os.59658
EnsemblPlants:LOC_Os09g25040.1 GeneID:9272478 KEGG:osa:9272478
OMA:SMSVLTA Uniprot:Q6EPZ6
Length = 499
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 110/181 (60%), Positives = 126/181 (69%)
Query: 273 SANPTGGCNGTG-----KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK- 326
+A P G G G + RVRARRGQATDPHSIAERLRRE+IAERMK LQELVPN+NK
Sbjct: 230 AAQPQAGAAGGGAPAPPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKL 289
Query: 327 --TDKASMLDEIIDYVKFLQLQVK----------VLSMSRLGAAGAVLPLITDGQAEASK 374
TDKASMLDEIIDYVKFLQLQVK VLSMSRLG A AV PL+ D +E
Sbjct: 290 MQTDKASMLDEIIDYVKFLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGRG 349
Query: 375 GLSLSPQADQGVDISLNSDQIAF-EEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAIS 433
G + A+ G + SD + E++V KLME ++ AMQYLQ KGLCLMPI+LA+AIS
Sbjct: 350 GGA----ANGGAPAAAGSDSLTVTEQQVAKLMEEDMGTAMQYLQGKGLCLMPISLASAIS 405
Query: 434 S 434
S
Sbjct: 406 S 406
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 127/276 (46%), Positives = 153/276 (55%)
Query: 173 SPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATM-NHD-VDTTGNRYVGMDKILQFD 230
SPSP L P +++ L + L D TG + D Q
Sbjct: 12 SPSPHLQSPATFDHDDFLHHIFSSTPWPSSVLDDTPPPTSDCAPVTGFHHHDADSRNQIT 71
Query: 231 YLSASIVAKGEQELPNHPL-SCFSSRPLPT-VP--TVGLPSLQQTASANPT-GGCNGTG- 284
+ S PN L + FS+ LP +P + G Q A+A+ T GG
Sbjct: 72 MIPLS------HNHPNDALFNGFSTGSLPFHLPQGSGGQTQTQSQATASATTGGATAQPQ 125
Query: 285 -KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFL 343
K +VRARRGQATDPHSIAERLRRE+IAERMK+LQELVPN NKTDKASMLDEIIDYVKFL
Sbjct: 126 TKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFL 185
Query: 344 QLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVK 403
QLQVKVLSMSRLG A + I++ + + S S +A E +V K
Sbjct: 186 QLQVKVLSMSRLGGAASASSQISEDAGGSHENTSSSGEAKMT------------EHQVAK 233
Query: 404 LMESNVTKAMQYLQNKGLCLMPIALATAISSGKASS 439
LME ++ AMQYLQ KGLCLMPI+LAT IS+ S
Sbjct: 234 LMEEDMGSAMQYLQGKGLCLMPISLATTISTATCPS 269
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 98/175 (56%), Positives = 120/175 (68%)
Query: 258 PTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNL 317
PT PT Q G + +VRARRGQATDPHSIAERLRRE+IAERM+ L
Sbjct: 103 PTPPTQVFHPQQSKQGGAAVGPQPPAPRPKVRARRGQATDPHSIAERLRRERIAERMRAL 162
Query: 318 QELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLS 377
QELVPN+NKTD+A+MLDEI+DYVKFL+LQVKVLSMSRLG AGAV L+ D KG +
Sbjct: 163 QELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLSV-KGEA 221
Query: 378 LSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI 432
+Q + ++D E +V KLME ++ AMQ+LQ+K LC+MPI+LA AI
Sbjct: 222 SDSGGNQQIWEKWSTD--GTERQVAKLMEEDIGAAMQFLQSKALCMMPISLAMAI 274
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 102/176 (57%), Positives = 124/176 (70%)
Query: 274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASML 333
A P T + RVRARRGQATDPHSIAERLRRE+IAER+++LQELVP NKTD+A+M+
Sbjct: 130 APPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMI 189
Query: 334 DEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQAD-QGVDISLNS 392
DEI+DYVKFL+LQVKVLSMSRLG AGAV PL+T+ LS S + + Q V ++
Sbjct: 190 DEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTE------MPLSSSVEDETQAVWEKWSN 243
Query: 393 DQIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAI--SSGKASSSDTISEE 446
D E +V KLME NV AMQ LQ+K LC+MPI+LA AI S +SS + E
Sbjct: 244 D--GTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIVKPE 297
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 97/166 (58%), Positives = 117/166 (70%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
+ RVRARRGQATDPHSIAERLRRE+IAER++ LQELVP NKTD+A+M+DEI+DYVKFL+
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 345 LQVKVLSMSRLGAAGAVLPLITDGQAEAS--KGLSLSPQADQGVDISLNSDQIAFEEEVV 402
LQVKVLSMSRLG AGAV PL+TD +S + Q ++D E +V
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSND--GTERQVA 260
Query: 403 KLMESNVTKAMQYLQNKGLCLMPIALATAI-SSGKASSSDTISEEN 447
KLME NV AMQ LQ+K LC+MPI+LA AI S +S + EN
Sbjct: 261 KLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPEN 306
>TAIR|locus:2027809 [details] [associations]
symbol:BEE3 "AT1G73830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000090950 ProtClustDB:CLSN2680013 EMBL:AF488585
EMBL:AC012679 EMBL:AK118781 EMBL:BT006055 IPI:IPI00541876
RefSeq:NP_177524.2 UniGene:At.34949 ProteinModelPortal:Q8GWK7
SMR:Q8GWK7 EnsemblPlants:AT1G73830.1 GeneID:843719
KEGG:ath:AT1G73830 TAIR:At1g73830 eggNOG:NOG264296
InParanoid:Q8GWK7 OMA:LENNFHQ PhylomeDB:Q8GWK7
Genevestigator:Q8GWK7 Uniprot:Q8GWK7
Length = 261
Score = 205 (77.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/107 (48%), Positives = 72/107 (67%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HSIAER+RR KI ER+K LQ++VP KT A+MLDEII+YV+ LQ Q
Sbjct: 147 VRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQ 206
Query: 347 VKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSD 393
V+ LSM +L AA + + + +A + + + +A + V++ D
Sbjct: 207 VEFLSM-KLTAASSYYDF--NSETDAVESMQKA-KAREAVEMGQGRD 249
Score = 48 (22.0 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 80 KNLLSEETQYEKDGQ-NCNGNLSSMNRSLKLG 110
+N +S++T Q + NGN+S+ N S + G
Sbjct: 99 ENSVSDQTLSTSSAQVSINGNISTKNNSSRRG 130
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 204 (76.9 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 41/71 (57%), Positives = 51/71 (71%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
K + RA +G ATDP S+ R RREKI ER+K LQ LVPN K D ++ML+E + YVKFLQ
Sbjct: 164 KGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
Query: 345 LQVKVLSMSRL 355
LQ+K+LS L
Sbjct: 224 LQIKLLSSDDL 234
Score = 47 (21.6 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 17/79 (21%), Positives = 37/79 (46%)
Query: 144 PSFVDSEHVGGNSSELSDIQRSLRDLQTISPS--------PELWLPTSYEEVSSLSSVIE 195
P+ +DS + E S ++R L D++ + + EL + VSS S+ ++
Sbjct: 78 PAMLDSWDQSHHLQETSSLKRKLLDVENLCKTNSNCDVTRQELAKSKKKQRVSSESNTVD 137
Query: 196 QPRTRGFYLQGATMNHDVD 214
+ T ++ G ++++ D
Sbjct: 138 ESNTN--WVDGQSLSNSSD 154
Score = 41 (19.5 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 19/75 (25%), Positives = 29/75 (38%)
Query: 24 SWDYSEPLQQNQLLPNSI-GVYKDDEKNSPVGIAMEGLAAQ------DTSSFVLGEESEY 76
SWD S LQ+ L + V + NS + + LA + S + E +
Sbjct: 83 SWDQSHHLQETSSLKRKLLDVENLCKTNSNCDVTRQELAKSKKKQRVSSESNTVDESNTN 142
Query: 77 GIDKNLLSEETQYEK 91
+D LS + EK
Sbjct: 143 WVDGQSLSNSSDDEK 157
>TAIR|locus:505006688 [details] [associations]
symbol:AT5G50915 "AT5G50915" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB017063 EMBL:AF428350 EMBL:AY057549 EMBL:AY113059
EMBL:AY087602 IPI:IPI00536793 RefSeq:NP_568745.1 RefSeq:NP_851163.1
UniGene:At.23601 ProteinModelPortal:Q93W88 SMR:Q93W88
EnsemblPlants:AT5G50915.1 EnsemblPlants:AT5G50915.2 GeneID:835164
KEGG:ath:AT5G50915 TAIR:At5g50915 eggNOG:NOG262059
HOGENOM:HOG000242938 InParanoid:Q93W88 OMA:ISERMRT PhylomeDB:Q93W88
ProtClustDB:CLSN2689980 Genevestigator:Q93W88 Uniprot:Q93W88
Length = 286
Score = 224 (83.9 bits), Expect = 7.9e-18, P = 7.9e-18
Identities = 60/140 (42%), Positives = 81/140 (57%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVK 341
T VRARRGQATD HS+AER+RREKI+ERM+ LQ LVP +K T KA MLDEII+YV+
Sbjct: 131 TDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQ 190
Query: 342 FLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSL-SPQADQGVDISLNSDQIAFEEE 400
LQ QV+ LSM ++ P++ D ++ GL L S V S +
Sbjct: 191 TLQTQVEFLSMKLT----SISPVVYDFGSDLD-GLILQSEMGSPEVGTSFTNAMPTTTPI 245
Query: 401 VVKLMESNVTKAMQYLQNKG 420
L++++V +Q +G
Sbjct: 246 FPSLLDNSVVPTHAQVQEEG 265
>UNIPROTKB|Q84T08 [details] [associations]
symbol:OSJNBa0087C10.10 "BHLH transcription factor,
putative, expressed" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC108906 RefSeq:NP_001051605.1
UniGene:Os.33544 STRING:Q84T08 EnsemblPlants:LOC_Os03g58830.1
GeneID:4334471 KEGG:osa:4334471 OMA:GTSTSEW ProtClustDB:CLSN2694415
Uniprot:Q84T08
Length = 265
Score = 222 (83.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 50/74 (67%), Positives = 59/74 (79%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER RREKI+ERMK LQ+LVP NK KAS+LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQALQRQ 195
Query: 347 VKVLSMSRLGAAGA 360
V+ LSM +L A A
Sbjct: 196 VEFLSM-KLEAVNA 208
>UNIPROTKB|Q6Z2G7 [details] [associations]
symbol:P0680A05.9 "Putative bHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008208 eggNOG:NOG251551 EMBL:AP005323 EMBL:AK119183
RefSeq:NP_001047868.1 UniGene:Os.7751
EnsemblPlants:LOC_Os02g47660.1 GeneID:4330462 KEGG:osa:4330462
OMA:TVESLCQ ProtClustDB:CLSN2693116 Uniprot:Q6Z2G7
Length = 361
Score = 236 (88.1 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 54/93 (58%), Positives = 69/93 (74%)
Query: 271 TASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDK 329
T+++ T G T VRARRGQATD HS+AER+RRE+I+ERM+ LQELVP NK T K
Sbjct: 148 TSASTVTAG-QKTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGK 206
Query: 330 ASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVL 362
A MLDEII+YV+ LQ QV+ LSM ++ A+ V+
Sbjct: 207 AGMLDEIINYVQSLQKQVEFLSM-KIAASNPVV 238
>UNIPROTKB|Q6ZCV8 [details] [associations]
symbol:P0028A08.20 "Os08g0487700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000145 EMBL:AP004557 RefSeq:NP_001062102.1 UniGene:Os.60678
EnsemblPlants:LOC_Os08g38080.1 GeneID:4345892 KEGG:osa:4345892
eggNOG:NOG275480 Uniprot:Q6ZCV8
Length = 365
Score = 229 (85.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 56/108 (51%), Positives = 70/108 (64%)
Query: 274 ANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASM 332
A G G + VRAR+GQAT+ HS+AERLRREKI+ERMK LQ+LVP +K T KA M
Sbjct: 162 AKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALM 221
Query: 333 LDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSP 380
LDEII+YV+ LQ QV+ LSM +L A + L + SK + P
Sbjct: 222 LDEIINYVQSLQRQVEFLSM-KLSAVNPRIDLDIESLVNNSKDVLRFP 268
>TAIR|locus:2028804 [details] [associations]
symbol:CIB5 "AT1G26260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0048513 "organ development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC079829 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238007
EMBL:AK117355 EMBL:BT005334 EMBL:AJ630483 EMBL:AY568655
EMBL:AF488608 IPI:IPI00529982 IPI:IPI00547855 PIR:H86388
RefSeq:NP_001031093.1 RefSeq:NP_173950.1 RefSeq:NP_973913.1
UniGene:At.41276 ProteinModelPortal:Q9C670 SMR:Q9C670 IntAct:Q9C670
STRING:Q9C670 EnsemblPlants:AT1G26260.1 EnsemblPlants:AT1G26260.2
GeneID:839167 KEGG:ath:AT1G26260 TAIR:At1g26260 eggNOG:NOG284637
InParanoid:Q9C670 OMA:ETHGYES PhylomeDB:Q9C670
ProtClustDB:CLSN2682645 Genevestigator:Q9C670 Uniprot:Q9C670
Length = 390
Score = 223 (83.6 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 50/80 (62%), Positives = 62/80 (77%)
Query: 284 GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKF 342
G +RARRGQAT+ HS+AER+RREKI+ERMK LQ+LVP +K T KA MLDEII+YV+
Sbjct: 219 GYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQS 278
Query: 343 LQLQVKVLSMSRLGAAGAVL 362
LQ Q++ LSM +L A VL
Sbjct: 279 LQCQIEFLSM-KLSAVNPVL 297
Score = 47 (21.6 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 40 SIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDGQNCNGN 99
SI +D ++S G + TSS + I K+ EE + +KD Q+ N
Sbjct: 144 SINNVSEDSQSSG-GNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSN 202
Query: 100 LSSMN 104
+ N
Sbjct: 203 ANKTN 207
>TAIR|locus:2139484 [details] [associations]
symbol:CIB1 "AT4G34530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161585 EMBL:AL023094
HOGENOM:HOG000238007 EMBL:AF488596 EMBL:AK117846 EMBL:AY120741
EMBL:BT005313 IPI:IPI00519970 PIR:T05273 RefSeq:NP_195179.2
UniGene:At.48937 ProteinModelPortal:Q8GY61 SMR:Q8GY61
DIP:DIP-59356N IntAct:Q8GY61 PRIDE:Q8GY61 EnsemblPlants:AT4G34530.1
GeneID:829604 KEGG:ath:AT4G34530 TAIR:At4g34530 eggNOG:NOG251551
InParanoid:Q8GY61 OMA:SGYSHEM PhylomeDB:Q8GY61
ProtClustDB:CLSN2915063 Genevestigator:Q8GY61 Uniprot:Q8GY61
Length = 335
Score = 225 (84.3 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 273 SANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKAS 331
S+ T T VRARRGQATD HSIAER+RREKI+ERMK LQ+LVP +K T KA
Sbjct: 157 SSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAG 216
Query: 332 MLDEIIDYVKFLQLQVKVLSM 352
MLDEII+YV+ LQ Q++ LSM
Sbjct: 217 MLDEIINYVQSLQRQIEFLSM 237
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 211 (79.3 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 42/85 (49%), Positives = 56/85 (65%)
Query: 271 TASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKA 330
++S+ T K + RA RG ATDP S+ R RRE+I ER+K LQ LVPN K D +
Sbjct: 199 SSSSQEVADAGATSKGKSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDIS 258
Query: 331 SMLDEIIDYVKFLQLQVKVLSMSRL 355
+ML+E + YVKFLQLQ+K+LS +
Sbjct: 259 TMLEEAVHYVKFLQLQIKLLSSDEM 283
Score = 44 (20.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 186 EVSSLSSVIEQPRTRGFYLQGATM------NHDVDTTGNRYVG---MDKILQFDYLSASI 236
E +SS I +QGAT NH +D+ GN +G +D + + S
Sbjct: 91 EALGVSSSIAPHDLSMVQVQGATEFLNVIPNHSLDSFGNGELGHEDLDSVSGTNKRKQS- 149
Query: 237 VAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTAS-ANPTGGCN 281
A+GE + C + + P ++++ AS A P G C+
Sbjct: 150 -AEGEFDGQTRGSKC-ARKAEPKRAKKAKQTVEKDASVAIPNGSCS 193
>UNIPROTKB|Q84LH4 [details] [associations]
symbol:OSJNBb0011H13.2 "Putative Helix-loop-helix
DNA-binding domain containing protein" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 EMBL:AC120983
EMBL:AC135956 RefSeq:NP_001051150.1 UniGene:Os.24540
EnsemblPlants:LOC_Os03g51910.1 GeneID:4333984 KEGG:osa:4333984
eggNOG:NOG262475 OMA:SKQMMLS ProtClustDB:CLSN2694257 Uniprot:Q84LH4
Length = 327
Score = 223 (83.6 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 81/239 (33%), Positives = 118/239 (49%)
Query: 201 GFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTV 260
G + Q ++ D + R G+D + SAS Q + + S + ++
Sbjct: 61 GTFCQNIQLSDDHSSGAKRRKGIDDHIALLNPSAS---SRIQNVGDQQTEVSSQQERISM 117
Query: 261 PTVGLPSLQQTASANPTGGCNGTGK--ARVRARRGQATDPHSIAERLRREKIAERMKNLQ 318
S + S + +GT + VRA+RGQAT+ HS+AERLRR+KI+ERMK LQ
Sbjct: 118 EEDNQKSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQ 177
Query: 319 ELVPNSNK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLS 377
+LVP +K T KA MLDEII+YV+ LQ QV+ LSM +L L D + SK +
Sbjct: 178 DLVPGCSKITGKAVMLDEIINYVQSLQRQVEFLSM-KLATVNPELSF--DIEQILSKQMM 234
Query: 378 LSPQ---ADQGVDISLNSDQIAFEEEVVKL-MESNVTKAMQYLQNKGLCLMPIALATAI 432
LS A GVD ++ F + +++ M NV+ LQ G + I+ I
Sbjct: 235 LSQDRHLAFYGVDPGSSALVAHFNQGIMQPEMLCNVSNPADVLQ--GTTIQDISTVNQI 291
>UNIPROTKB|Q75M33 [details] [associations]
symbol:P0668H12.5 "BHLH transcription factor" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000142 EMBL:AC084818 EMBL:AC073405 EMBL:HQ858853
EMBL:AK065864 RefSeq:NP_001054390.1 UniGene:Os.23082
EnsemblPlants:LOC_Os05g01256.1 EnsemblPlants:LOC_Os05g01256.2
GeneID:4337537 KEGG:osa:4337537 eggNOG:NOG296531 Uniprot:Q75M33
Length = 339
Score = 224 (83.9 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 51/76 (67%), Positives = 57/76 (75%)
Query: 278 GGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEI 336
GG G VRARRGQATD HS+AER+RREKI+ERMK LQ LVP +K T KA MLDEI
Sbjct: 170 GGEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEI 229
Query: 337 IDYVKFLQLQVKVLSM 352
I YV+ LQ QV+ LSM
Sbjct: 230 ISYVQSLQNQVEFLSM 245
>TAIR|locus:2079676 [details] [associations]
symbol:AT3G07340 "AT3G07340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC009853 EMBL:AK175369 EMBL:AK175496
EMBL:AK176563 EMBL:AK176663 EMBL:BT026497 EMBL:AF488595
IPI:IPI00521004 RefSeq:NP_187390.1 UniGene:At.40357
ProteinModelPortal:Q9SRT2 SMR:Q9SRT2 EnsemblPlants:AT3G07340.1
GeneID:819922 KEGG:ath:AT3G07340 GeneFarm:2908 TAIR:At3g07340
eggNOG:NOG283912 InParanoid:Q9SRT2 OMA:MENELFM PhylomeDB:Q9SRT2
ProtClustDB:CLSN2684837 Genevestigator:Q9SRT2 Uniprot:Q9SRT2
Length = 456
Score = 227 (85.0 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 67/139 (48%), Positives = 84/139 (60%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER+RREKI+ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317
Query: 347 VKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLME 406
V+ LSM +L + L D A SK DI +S+ + ++V++L
Sbjct: 318 VEFLSM-KLSSVNTRLDFNMD--ALLSK------------DIFPSSNNLMHHQQVLQLDS 362
Query: 407 SNVTKAMQYLQNKGLCLMP 425
S T + NK L L P
Sbjct: 363 SAETLLGDH-HNKNLQLNP 380
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 189 (71.6 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 37/71 (52%), Positives = 51/71 (71%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
K + +A RG A+DP S+ R RRE+I +R+K LQ LVPN K D ++ML++ + YVKFLQ
Sbjct: 129 KRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188
Query: 345 LQVKVLSMSRL 355
LQ+K+LS L
Sbjct: 189 LQIKLLSSEDL 199
Score = 40 (19.1 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 170 QTISPSPELWLPTSYEEVSSLSSVIEQPRT 199
+ + +L P +++SS S+++ +P+T
Sbjct: 69 RNVDSRQDLLKPRKKQKLSSESNLVTEPKT 98
>UNIPROTKB|Q69WS3 [details] [associations]
symbol:OJ1118_E12.15 "Putative bHLH protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003743
ProteinModelPortal:Q69WS3 Gramene:Q69WS3 Uniprot:Q69WS3
Length = 268
Score = 207 (77.9 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 44/64 (68%), Positives = 53/64 (82%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER RREKI+ERMK LQ+LVP NK KAS+LDEII+Y++ LQ Q
Sbjct: 128 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEIINYIQSLQHQ 187
Query: 347 VKVL 350
V+ +
Sbjct: 188 VEFM 191
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 207 (77.9 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 53/128 (41%), Positives = 77/128 (60%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER RREKI+E+M LQ+++P NK KA +LDEII+Y++ LQ Q
Sbjct: 153 VRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQ 212
Query: 347 VKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLME 406
V+ LSM L ++ G A + + P D G + ++ + +E++ E
Sbjct: 213 VEFLSMK--------LEVVNSG-ASTGPTIGVFPSGDLGT-LPIDVHRTIYEQQ-----E 257
Query: 407 SNVTKAMQ 414
+N T+ Q
Sbjct: 258 ANETRVSQ 265
>TAIR|locus:2032990 [details] [associations]
symbol:CES "AT1G25330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:2000488 "positive regulation of brassinosteroid biosynthetic
process" evidence=IMP] [GO:0048441 "petal development"
evidence=RCA] [GO:0048443 "stamen development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG264296 EMBL:AC079374 EMBL:DQ446289 EMBL:DQ652859
EMBL:AK175757 EMBL:AY088885 EMBL:AF488607 IPI:IPI00519962
PIR:B86383 PIR:D86381 RefSeq:NP_564229.1 UniGene:At.48236
UniGene:At.63980 ProteinModelPortal:A4D998 SMR:A4D998
EnsemblPlants:AT1G25330.1 GeneID:839117 KEGG:ath:AT1G25330
GeneFarm:2907 TAIR:At1g25330 InParanoid:A4D998 PhylomeDB:A4D998
Genevestigator:A4D998 GO:GO:2000488 Uniprot:A4D998
Length = 223
Score = 204 (76.9 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 48/78 (61%), Positives = 57/78 (73%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRA+RGQATD HS+AER+RREKI ER+K LQ+LVP K A MLD IIDYV+ LQ Q
Sbjct: 104 VRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQ 163
Query: 347 VKVLSMSRLGAAGAVLPL 364
++ LSM +L AA A L
Sbjct: 164 IEFLSM-KLSAASACYDL 180
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 224 (83.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 49/66 (74%), Positives = 55/66 (83%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER+RREKI ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 301 VRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 360
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 361 VEFLSM 366
>UNIPROTKB|Q69JJ6 [details] [associations]
symbol:OSJNBa0026C08.22 "TA1 protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008215
ProtClustDB:CLSN2697804 EMBL:AP006169 EMBL:HQ858863 EMBL:AK121418
RefSeq:NP_001063455.1 UniGene:Os.38400
EnsemblPlants:LOC_Os09g29830.3 GeneID:4347355 KEGG:osa:4347355
Uniprot:Q69JJ6
Length = 428
Score = 222 (83.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 52/82 (63%), Positives = 62/82 (75%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRARRGQAT+ HS+AERLRREKI+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 248 VRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 307
Query: 347 VKVLSMSRLGAAGAVLPLITDG 368
V+ LSM +L L L +G
Sbjct: 308 VEFLSM-KLATVNPRLDLNIEG 328
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 220 (82.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 47/97 (48%), Positives = 65/97 (67%)
Query: 284 GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFL 343
GK+ V +R +A H+ +ER RR+KI +RMK LQ+LVPNS+KTDKASMLDE+I+Y+K
Sbjct: 203 GKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLK-- 260
Query: 344 QLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSP 380
QLQ +V MSR+ +LP+ Q + L +P
Sbjct: 261 QLQAQVSMMSRMNMPSMMLPMAMQQQQQLQMSLMSNP 297
>TAIR|locus:2115200 [details] [associations]
symbol:BEE2 "AT4G36540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
PROSITE:PS00678 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161589 EMBL:Z99708
EMBL:AF488591 EMBL:AF370231 EMBL:AY059122 EMBL:AY054588
EMBL:BT000388 EMBL:AY084997 EMBL:AY138254 IPI:IPI00540245
IPI:IPI00548266 PIR:D85431 RefSeq:NP_195372.1 RefSeq:NP_849508.1
UniGene:At.25403 ProteinModelPortal:Q93VJ4 SMR:Q93VJ4 IntAct:Q93VJ4
PRIDE:Q93VJ4 EnsemblPlants:AT4G36540.1 GeneID:829806
KEGG:ath:AT4G36540 TAIR:At4g36540 eggNOG:NOG240651
InParanoid:Q93VJ4 OMA:ELECHID PhylomeDB:Q93VJ4
ProtClustDB:CLSN2685556 Genevestigator:Q93VJ4 Uniprot:Q93VJ4
Length = 304
Score = 212 (79.7 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 45/66 (68%), Positives = 55/66 (83%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRARRG+ATD HS+AER RREKI+++MK LQ++VP NK T KA MLDEII+YV+ LQ Q
Sbjct: 141 VRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQ 200
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 201 VEFLSM 206
>TAIR|locus:2202867 [details] [associations]
symbol:BPEp "AT1G59640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048446 "petal morphogenesis" evidence=IMP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009753 "response to jasmonic
acid stimulus" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0048441 "petal development" evidence=RCA] [GO:0048443 "stamen
development" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AM269753 EMBL:AM269754
EMBL:AC009317 EMBL:BT003964 EMBL:BT005064 EMBL:AY086373
EMBL:AB028232 IPI:IPI00530097 IPI:IPI00531813 PIR:B96620 PIR:T52428
RefSeq:NP_564749.1 RefSeq:NP_849829.1 UniGene:At.455
ProteinModelPortal:Q0JXE7 SMR:Q0JXE7 IntAct:Q0JXE7 STRING:Q0JXE7
PRIDE:Q0JXE7 EnsemblPlants:AT1G59640.2 GeneID:842254
KEGG:ath:AT1G59640 TAIR:At1g59640 eggNOG:NOG296410
InParanoid:Q0JXE7 OMA:RGASPEW PhylomeDB:Q0JXE7
ProtClustDB:CLSN2688917 Genevestigator:Q0JXE7 GO:GO:0048446
Uniprot:Q0JXE7
Length = 343
Score = 215 (80.7 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 64/168 (38%), Positives = 91/168 (54%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER RREKI+ERMK LQ+LVP NK KA +LDEII+Y++ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 195
Query: 347 VKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSD-QIAFEEEVVKLM 405
V+ LSM +L A + + + G+ + P + + + +NS I F ++ + L
Sbjct: 196 VEFLSM-KLEAVNSRM----------NPGIEVFPPKEVMILMIINSIFSIFFTKQYMFLS 244
Query: 406 ESNVTKAMQYLQNKGL--CLMPIALATAISSGKASSSDTISEENKFCF 451
+ +++ + C L S K TI +N CF
Sbjct: 245 RYSRGRSLDVYAVRSFKHCNKRSDLCFCSCSPKTELKTTIFSQNMTCF 292
>TAIR|locus:2201906 [details] [associations]
symbol:AT1G10120 "AT1G10120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC004122 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT012655 EMBL:AK221806 EMBL:AK229309
EMBL:AK230347 EMBL:AF488606 IPI:IPI00541831 PIR:T00632
RefSeq:NP_172483.4 UniGene:At.43391 UniGene:At.69296
ProteinModelPortal:Q6NKN9 SMR:Q6NKN9 EnsemblPlants:AT1G10120.1
GeneID:837549 KEGG:ath:AT1G10120 TAIR:At1g10120 eggNOG:NOG271189
HOGENOM:HOG000090626 InParanoid:Q6NKN9 OMA:GESSHED PhylomeDB:Q6NKN9
ProtClustDB:CLSN2681496 Genevestigator:Q6NKN9 Uniprot:Q6NKN9
Length = 366
Score = 217 (81.4 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 47/66 (71%), Positives = 56/66 (84%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
+RARRGQAT+ HS+AER+RREKI+ERM+ LQELVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 206 MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 265
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 266 VEFLSM 271
Score = 37 (18.1 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 6 DHYFSSSSWSDV-NA 19
D +FSS+ W V NA
Sbjct: 38 DPFFSSADWDPVVNA 52
>TAIR|locus:2205420 [details] [associations]
symbol:AT1G68920 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AF488584 EMBL:AY128299
EMBL:BT002259 IPI:IPI00536565 IPI:IPI00545990 PIR:G96713
RefSeq:NP_001031255.1 RefSeq:NP_177058.1 RefSeq:NP_849863.2
UniGene:At.28096 ProteinModelPortal:Q9CAA9 SMR:Q9CAA9 STRING:Q9CAA9
EnsemblPlants:AT1G68920.1 EnsemblPlants:AT1G68920.2 GeneID:843225
KEGG:ath:AT1G68920 TAIR:At1g68920 eggNOG:NOG301979
HOGENOM:HOG000238007 InParanoid:Q3E6P7 OMA:MLKGGIF PhylomeDB:Q9CAA9
ProtClustDB:CLSN2682343 Genevestigator:Q9CAA9 Uniprot:Q9CAA9
Length = 486
Score = 223 (83.6 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 49/70 (70%), Positives = 57/70 (81%)
Query: 284 GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKF 342
G VRARRGQAT+ HS+AER+RREKI+ERMK LQ+LVP NK T KA MLDEII+YV+
Sbjct: 299 GYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQS 358
Query: 343 LQLQVKVLSM 352
LQ QV+ LSM
Sbjct: 359 LQRQVEFLSM 368
Score = 38 (18.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 18 NAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSP 52
N ++ S S QQ++ P++ G K +++ SP
Sbjct: 241 NGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSP 275
>UNIPROTKB|Q5VR96 [details] [associations]
symbol:P0038C05.31-1 "Os06g0275600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003044 RefSeq:NP_001057380.1 UniGene:Os.32526
EnsemblPlants:LOC_Os06g16400.1 EnsemblPlants:LOC_Os06g16400.2
GeneID:4340749 KEGG:osa:4340749 ProtClustDB:CLSN2697804
Uniprot:Q5VR96
Length = 437
Score = 217 (81.4 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRARRGQAT+ HS+AER+RREKI+ERMK LQ+LVP +K T KA MLDEII+YV+ LQ Q
Sbjct: 260 VRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQ 319
Query: 347 VKVLSMSRLGAAGAVL 362
V+ LSM +L + L
Sbjct: 320 VEFLSM-KLASVNPTL 334
>TAIR|locus:2095198 [details] [associations]
symbol:AT3G23690 "AT3G23690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
EMBL:AP000377 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AY065441 EMBL:AY096536
EMBL:EU550216 EMBL:EU550217 EMBL:EU550218 EMBL:EU550219
EMBL:EU550220 EMBL:EU550221 EMBL:EU550222 EMBL:EU550223
EMBL:EU550224 EMBL:EU550225 EMBL:EU550226 EMBL:EU550227
EMBL:EU550228 EMBL:EU550229 EMBL:EU550230 EMBL:EU550231
EMBL:EU550232 EMBL:EU550233 EMBL:EU550234 EMBL:EU550235
EMBL:EU550236 EMBL:EU550237 EMBL:EU550238 EMBL:EU550239
EMBL:AF488609 IPI:IPI00545445 RefSeq:NP_189011.2 UniGene:At.6666
ProteinModelPortal:Q9LK48 SMR:Q9LK48 PaxDb:Q9LK48 PRIDE:Q9LK48
EnsemblPlants:AT3G23690.1 GeneID:821950 KEGG:ath:AT3G23690
TAIR:At3g23690 eggNOG:NOG292697 InParanoid:Q9LK48 OMA:MEFNANA
PhylomeDB:Q9LK48 ProtClustDB:CLSN2917952 Genevestigator:Q9LK48
Uniprot:Q9LK48
Length = 371
Score = 214 (80.4 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 47/66 (71%), Positives = 54/66 (81%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER RREKI+ERM LQ+LVP N+ T KA MLDEII+YV+ LQ Q
Sbjct: 191 VRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQ 250
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 251 VEFLSM 256
>TAIR|locus:2141573 [details] [associations]
symbol:FBH2 "AT4G09180" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL161514 HOGENOM:HOG000095218 ProtClustDB:CLSN2679906
EMBL:AF488613 EMBL:BT010423 EMBL:AK230384 IPI:IPI00545642
PIR:B85093 RefSeq:NP_192657.1 UniGene:At.33710
ProteinModelPortal:Q9M0R0 SMR:Q9M0R0 PaxDb:Q9M0R0 PRIDE:Q9M0R0
EnsemblPlants:AT4G09180.1 GeneID:826499 KEGG:ath:AT4G09180
TAIR:At4g09180 eggNOG:NOG277140 InParanoid:Q9M0R0 OMA:MENLMED
PhylomeDB:Q9M0R0 Genevestigator:Q9M0R0 Uniprot:Q9M0R0
Length = 262
Score = 196 (74.1 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 60/171 (35%), Positives = 90/171 (52%)
Query: 197 PRTRGFYLQGATMNHDVDTTGNRYVGMDKILQ-------FDYLSASI-VAKGEQELPNHP 248
P +G Y QG + T + G D +Q +DYLS +I V+ G + +
Sbjct: 81 PVEQGLYQQGG-FHRQNSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGSKR--SRE 137
Query: 249 LSCFSSRPLPTVPTVG------LPS-LQQTASANPTGGCNGTGKARVRARRGQATDPHSI 301
+ S P T G +P+ + + N + RVRA+RG AT P SI
Sbjct: 138 MEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSI 197
Query: 302 AERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQVKVLS 351
AER+RR +I++R++ LQELVPN +K T+ A ML+E ++YVK LQ Q++ L+
Sbjct: 198 AERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELT 248
>UNIPROTKB|Q84QW1 [details] [associations]
symbol:OJ1191_A10.109 "BHLH transcription
factor(GBOF-1)-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP008214
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003888
RefSeq:NP_001062289.1 UniGene:Os.10830
EnsemblPlants:LOC_Os08g41320.1 GeneID:4346087 KEGG:osa:4346087
eggNOG:NOG320619 OMA:ERISQRM ProtClustDB:CLSN2697487 Uniprot:Q84QW1
Length = 405
Score = 214 (80.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 46/66 (69%), Positives = 55/66 (83%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER+RRE+I++RMK LQ+LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 204 VRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQ 263
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 264 VEFLSM 269
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 206 (77.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 58/153 (37%), Positives = 89/153 (58%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
T AR R +R +A + H+++E+ RR +I E+MK LQ L+PNS+KTDKASMLD+ I+Y+K
Sbjct: 21 TRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLDDAIEYLKQ 80
Query: 343 LQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVV 402
LQLQV++LSM G LP + + A + L + PQ +D NS + + V+
Sbjct: 81 LQLQVQMLSMRN----GLYLPPVN--LSGAPEHLPI-PQMSAALD--QNSAKASDPSVVL 131
Query: 403 KLMESNVTKAMQY---LQNKGLCLMPIALATAI 432
+ + + + Q+K L L + ATA+
Sbjct: 132 QPVNQTSGALLPFELASQHKPLFLPGVPNATAL 164
>TAIR|locus:2014144 [details] [associations]
symbol:BEE1 "BR enhanced expression 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC013354
EMBL:AY138253 EMBL:AF488579 EMBL:AK117269 EMBL:BT005268
IPI:IPI00539846 RefSeq:NP_173276.2 UniGene:At.46141
ProteinModelPortal:Q8GZ13 SMR:Q8GZ13 IntAct:Q8GZ13
EnsemblPlants:AT1G18400.1 GeneID:838421 KEGG:ath:AT1G18400
TAIR:At1g18400 eggNOG:euNOG17991 HOGENOM:HOG000090950
InParanoid:Q8GZ13 PhylomeDB:Q8GZ13 ProtClustDB:CLSN2680013
Genevestigator:Q8GZ13 Uniprot:Q8GZ13
Length = 260
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/74 (60%), Positives = 57/74 (77%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER+RR KI ER++ LQ++VP K A+MLDEII+YV+ LQ Q
Sbjct: 145 VRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 204
Query: 347 VKVLSMSRLGAAGA 360
V+ LSM +L AA +
Sbjct: 205 VEFLSM-KLTAASS 217
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 206 (77.6 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 50/123 (40%), Positives = 70/123 (56%)
Query: 227 LQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKA 286
L+ DYL + + A P HP S S P P P P Q + GT +A
Sbjct: 85 LRQDYLCSELYAS--TPAP-HPQSSVSLAPPPPKPPSSAP-YGQIIAPRSAPRIQGTEEA 140
Query: 287 R--VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
R +R +A + H++AER RREKI ERMK LQ+L+P NK+ K SML+++I+YVK L+
Sbjct: 141 RGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLE 200
Query: 345 LQV 347
+Q+
Sbjct: 201 MQI 203
>UNIPROTKB|Q8S490 [details] [associations]
symbol:rau1 "Transcription factor RAU1" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF465824
ProteinModelPortal:Q8S490 Gramene:Q8S490 Genevestigator:Q8S490
Uniprot:Q8S490
Length = 150
Score = 192 (72.6 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
++RA+RG AT P SIAER+RR +I+ER++ LQELVPN +K T+ A MLD +DY+K LQ
Sbjct: 68 KIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQK 127
Query: 346 QVKVLSMSR 354
QVK L+ SR
Sbjct: 128 QVKGLNDSR 136
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 206 (77.6 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 273 SANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASM 332
S+ P + ++R +A + H+++E+ RR KI E+MK LQ L+PNSNKTDKASM
Sbjct: 82 SSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASM 141
Query: 333 LDEIIDYVKFLQLQVKVLSM 352
LDE I+Y+K LQLQV++LSM
Sbjct: 142 LDEAIEYLKQLQLQVQMLSM 161
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 191 (72.3 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 43/82 (52%), Positives = 57/82 (69%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
K R +R H+++E+ RR KI E+MK LQ+L+PNSNKTDKASMLDE I+Y+K LQ
Sbjct: 84 KQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 143
Query: 345 LQVKVLS-MSRLGAAGAVLPLI 365
LQV+ L+ M+ LG LP +
Sbjct: 144 LQVQTLAVMNGLGLNPMRLPQV 165
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 185 (70.2 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 38/66 (57%), Positives = 53/66 (80%)
Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
RVRA+RG AT P SIAER+RR +I++R++ LQELVPN +K T+ A ML+E ++YVK LQ
Sbjct: 180 RVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQS 239
Query: 346 QVKVLS 351
Q++ L+
Sbjct: 240 QIQELT 245
Score = 43 (20.2 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 153 GGNSSELSDIQRSLRDLQTISPSPELWLPTSYEE 186
GG ++ RS L I +P W+ T EE
Sbjct: 12 GGGGGGGGEVSRS--GLSRIRSAPATWIETLLEE 43
>UNIPROTKB|Q5N802 [details] [associations]
symbol:P0004D12.24 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008207 eggNOG:NOG283912 EMBL:AP003433 EMBL:HQ858864
EMBL:AK101063 RefSeq:NP_001045188.1 UniGene:Os.5763
EnsemblPlants:LOC_Os01g68700.2 GeneID:4324327 KEGG:osa:4324327
ProtClustDB:CLSN2692207 Uniprot:Q5N802
Length = 481
Score = 214 (80.4 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 46/66 (69%), Positives = 55/66 (83%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKT-DKASMLDEIIDYVKFLQLQ 346
VRARRG+ATD HS+AER+RREKI++RMK LQ+LVP NK KA MLDEII+YV+ LQ Q
Sbjct: 277 VRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQ 336
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 337 VEFLSM 342
Score = 37 (18.1 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 126 MNLGSPKQLP 135
MN G P QLP
Sbjct: 1 MNCGPPDQLP 10
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 208 (78.3 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 43/79 (54%), Positives = 61/79 (77%)
Query: 291 RRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVL 350
RR +A + H+++ER RR++I ERMK LQEL+P+ +KTDKAS+LDE IDY+K LQLQ++V+
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
Query: 351 SM-SRLGAAGAVLPLITDG 368
M S + AA A P++ G
Sbjct: 314 WMGSGMAAAAASAPMMFPG 332
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 188 (71.2 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 291 RRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVL 350
RR ++ + H+ +ER RR++I E++K LQEL+PN KTDK SMLDE IDY+K LQLQ+++L
Sbjct: 10 RRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQML 69
Query: 351 SMSRLGAAGAVLP 363
M + G A V P
Sbjct: 70 VMGK-GMAPVVPP 81
>UNIPROTKB|Q8GZV6 [details] [associations]
symbol:OJ1017C11.10 "Putative uncharacterized protein
OJ1017C11.10" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR001810
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50181 PROSITE:PS50888
SMART:SM00256 SMART:SM00353 GO:GO:0005634 SUPFAM:SSF81383
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR019955
PROSITE:PS50053 EMBL:AC135157 ProteinModelPortal:Q8GZV6
Gramene:Q8GZV6 Uniprot:Q8GZV6
Length = 776
Score = 214 (80.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 47/66 (71%), Positives = 54/66 (81%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQ 346
VRA+RGQAT+ HS+AER RREKI ERMK LQ+LVP NK T KA MLDEII+YV+ LQ Q
Sbjct: 628 VRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQ 687
Query: 347 VKVLSM 352
V+ LSM
Sbjct: 688 VEFLSM 693
Score = 41 (19.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 254 SRPLPTVPTVGLPSLQQTASANPT 277
++PLP P +PS+ +A+PT
Sbjct: 103 AQPLPRNPNPDVPSI--AGAADPT 124
>TAIR|locus:2053766 [details] [associations]
symbol:AT2G42300 "AT2G42300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005956 EMBL:AY065411 EMBL:AY096521 EMBL:AK175584
EMBL:AK176019 EMBL:AK176634 EMBL:AF488583 IPI:IPI00532521
PIR:C84852 RefSeq:NP_850368.1 UniGene:At.28495
ProteinModelPortal:Q8VZ02 SMR:Q8VZ02 EnsemblPlants:AT2G42300.1
GeneID:818831 KEGG:ath:AT2G42300 TAIR:At2g42300 eggNOG:NOG301522
HOGENOM:HOG000037005 InParanoid:Q8VZ02 OMA:PEWGREE PhylomeDB:Q8VZ02
ProtClustDB:CLSN2680198 Genevestigator:Q8VZ02 Uniprot:Q8VZ02
Length = 327
Score = 198 (74.8 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 49/89 (55%), Positives = 59/89 (66%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD-KASMLDEIIDYVKFLQLQ 346
VRARRGQATD HS+AER RREKI RMK LQELVP +K A +LDEII++V+ LQ Q
Sbjct: 185 VRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQ 244
Query: 347 VKVLSMSRLGAAGAVLPLITDGQAEASKG 375
V++LSM RL A + D + G
Sbjct: 245 VEMLSM-RLAAVNPRIDFNLDSILASENG 272
>TAIR|locus:2059979 [details] [associations]
symbol:FBH4 "AT2G42280" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0046685
"response to arsenic-containing substance" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC002561 GO:GO:0048573
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG312535
HOGENOM:HOG000242890 EMBL:BT015339 EMBL:BT015712 EMBL:AK228981
IPI:IPI00530686 IPI:IPI00538142 PIR:T00937 RefSeq:NP_181757.2
RefSeq:NP_973670.1 UniGene:At.12448 UniGene:At.43726
ProteinModelPortal:Q66GR3 SMR:Q66GR3 PRIDE:Q66GR3
EnsemblPlants:AT2G42280.1 GeneID:818829 KEGG:ath:AT2G42280
TAIR:At2g42280 InParanoid:Q66GR3 OMA:NDNRANC PhylomeDB:Q66GR3
ProtClustDB:CLSN2681218 Genevestigator:Q66GR3 Uniprot:Q66GR3
Length = 359
Score = 191 (72.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 39/69 (56%), Positives = 54/69 (78%)
Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
++RA+RG AT P SIAER+RR +I+ERM+ LQELVPN +K T+ + MLD +DY+K LQ
Sbjct: 278 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQR 337
Query: 346 QVKVLSMSR 354
Q K+L+ +R
Sbjct: 338 QYKILNDNR 346
Score = 49 (22.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 32 QQNQLLPNSIGVYK----DDEKNSPVGIAMEGLAAQDTSSFV-LGEESEYGIDKNLLSEE 86
+Q++ + NS+G+ + ++ PV + ++ F L +++ YG +NL++ E
Sbjct: 102 RQSKGIMNSVGLDQFLGINNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNYE 161
Query: 87 TQYEKDGQNCNG 98
E+ N NG
Sbjct: 162 ED-EESPSNSNG 172
>TAIR|locus:2118934 [details] [associations]
symbol:RSL2 "AT4G33880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0048766 "root hair initiation"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009733 GO:GO:0003677 GO:GO:0016049 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL031032
EMBL:AL161584 HOGENOM:HOG000240244 GO:GO:0048766 EMBL:AF488616
EMBL:BT003137 EMBL:AK228110 IPI:IPI00526320 PIR:T05216
RefSeq:NP_195114.2 UniGene:At.31542 ProteinModelPortal:Q84WK0
SMR:Q84WK0 EnsemblPlants:AT4G33880.1 GeneID:829531
KEGG:ath:AT4G33880 TAIR:At4g33880 eggNOG:NOG318365
InParanoid:Q84WK0 OMA:TINTNSY PhylomeDB:Q84WK0
ProtClustDB:CLSN2680247 Genevestigator:Q84WK0 Uniprot:Q84WK0
Length = 352
Score = 199 (75.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 43/81 (53%), Positives = 55/81 (67%)
Query: 275 NPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLD 334
+P+ N GK R A RG ATDP S+ R RRE+I ER++ LQ LVPN K D ++ML+
Sbjct: 255 DPSKALNLNGKTR--ASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLE 312
Query: 335 EIIDYVKFLQLQVKVLSMSRL 355
E + YVKFLQLQ+K+LS L
Sbjct: 313 EAVHYVKFLQLQIKLLSSDDL 333
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 180 (68.4 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 43/86 (50%), Positives = 60/86 (69%)
Query: 306 RREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLI 365
RR++I ++MK LQ+LVPNS+KTDKASMLDE+IDY+K LQ QV+V MSR+G+ ++P+
Sbjct: 13 RRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV--MSRMGSM--MMPM- 67
Query: 366 TDGQAEASKGLSLSPQADQGVDISLN 391
G A +S+ Q Q I L+
Sbjct: 68 --GMAMPQLQMSVMAQMAQMAQIGLS 91
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 202 (76.2 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 40/82 (48%), Positives = 61/82 (74%)
Query: 282 GTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVK 341
G + + ++R ++ + H+++ER RR++I E+M+ LQEL+PN NK DKASMLDE I+Y+K
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 342 FLQLQVKVLSMSRLGAAGAVLP 363
LQLQV+++SM A+G LP
Sbjct: 391 SLQLQVQIMSM----ASGYYLP 408
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 202 (76.2 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 282 GTGKAR--VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDY 339
GT +A +R +A D H+++ER RRE+I ERMK LQEL+P KTDK SML+++I+Y
Sbjct: 343 GTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEY 402
Query: 340 VKFLQLQVKVLSMSRLGAAGAVLPLITDGQAE 371
VK LQLQ++++SM G + P++ +G +
Sbjct: 403 VKSLQLQIQMMSMGH----GMMPPMMHEGNTQ 430
>TAIR|locus:2156015 [details] [associations]
symbol:RSL1 "AT5G37800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000006063 ProtClustDB:CLSN2681768 EMBL:AB016873
IPI:IPI00523734 RefSeq:NP_198596.1 UniGene:At.55195
ProteinModelPortal:Q9FJ00 SMR:Q9FJ00 EnsemblPlants:AT5G37800.1
GeneID:833758 KEGG:ath:AT5G37800 TAIR:At5g37800 eggNOG:NOG303056
InParanoid:Q9FJ00 OMA:MDFNASS PhylomeDB:Q9FJ00
Genevestigator:Q9FJ00 Uniprot:Q9FJ00
Length = 307
Score = 193 (73.0 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 50/112 (44%), Positives = 66/112 (58%)
Query: 273 SANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASM 332
S P+ G NG K + +A DP S+A + RRE+I+ER+K LQELVPN K D +M
Sbjct: 189 SKKPSSGTNG--KIKPKATTSPK-DPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTM 245
Query: 333 LDEIIDYVKFLQLQVKVLSMSRLGAA-GAVLPLITDGQAEASKGLSLSPQAD 383
L++ I YVKFLQ+QVKVL+ A G P I+ + EA + S Q D
Sbjct: 246 LEKAIGYVKFLQVQVKVLAADEFWPAQGGKAPDISQVK-EAIDAILSSSQRD 296
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 198 (74.8 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 44/101 (43%), Positives = 68/101 (67%)
Query: 271 TASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKA 330
T++ + T G N + + RR +A + H+++ER RR++I ERMK LQEL+P+ ++TDKA
Sbjct: 234 TSTDDQTMG-NKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKA 292
Query: 331 SMLDEIIDYVKFLQLQVKVLSMSR---LGAAGAVLPLITDG 368
S+LDE IDY+K LQ+Q++V+ M AA A P++ G
Sbjct: 293 SILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPG 333
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 196 (74.1 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 38/67 (56%), Positives = 55/67 (82%)
Query: 286 ARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQL 345
+R ++R +A + H+++E+ RR +I E+MK LQ L+PNSNKTDKASMLDE I+Y+K LQL
Sbjct: 189 SRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQL 248
Query: 346 QVKVLSM 352
QV++L+M
Sbjct: 249 QVQMLTM 255
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 197 (74.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 40/73 (54%), Positives = 57/73 (78%)
Query: 283 TGKARVRA---RRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDY 339
T +ARV +R +A + H+++ER RR++I ERMK LQEL+P NK+DKASMLDE I+Y
Sbjct: 270 TKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEY 329
Query: 340 VKFLQLQVKVLSM 352
+K LQLQ++++SM
Sbjct: 330 MKSLQLQIQMMSM 342
>TAIR|locus:2028957 [details] [associations]
symbol:RHD6 "AT1G66470" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0048766 "root
hair initiation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048766 EMBL:AC074025
EMBL:AY128310 EMBL:BT006320 EMBL:AF488615 IPI:IPI00529158
PIR:C96690 RefSeq:NP_176820.1 UniGene:At.35765
ProteinModelPortal:Q9C707 SMR:Q9C707 IntAct:Q9C707
EnsemblPlants:AT1G66470.1 GeneID:842965 KEGG:ath:AT1G66470
TAIR:At1g66470 eggNOG:NOG301765 HOGENOM:HOG000006063
InParanoid:Q9C707 OMA:HESFPPP PhylomeDB:Q9C707
ProtClustDB:CLSN2681768 Genevestigator:Q9C707 Uniprot:Q9C707
Length = 298
Score = 186 (70.5 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 46/110 (41%), Positives = 65/110 (59%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
TGK + + DP S+A + RRE+I+ER+K LQELVPN K D +ML++ I YVKF
Sbjct: 191 TGKTKPKPTTSPK-DPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKF 249
Query: 343 LQLQVKVLSMSRLGAA-GAVLPLITDGQAEASKGLSLSPQADQGVDISLN 391
LQ+QVKVL+ A G P I+ + +A + S Q D+ ++ N
Sbjct: 250 LQVQVKVLATDEFWPAQGGKAPDISQVK-DAIDAILSSSQRDRNSNLITN 298
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 192 (72.6 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 43/99 (43%), Positives = 66/99 (66%)
Query: 285 KARVRA-RRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFL 343
K+ R+ +R + + H+++ER RR++I E+M+ LQEL+PN NK DKASMLDE I+Y+K L
Sbjct: 302 KSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTL 361
Query: 344 QLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQA 382
QLQV+++SM G + P++ A + L + P A
Sbjct: 362 QLQVQMMSM---GTGLCIPPMLLP---TAMQHLQIPPMA 394
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 178 (67.7 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 285 KARVRARRGQ--ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
K+ +A+ G ATDP S+ R RRE+I ER+K LQ LVPN K D ++ML+E + YVKF
Sbjct: 216 KSNGKAQSGHRSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKF 275
Query: 343 LQLQVKVLSMSRL 355
LQLQ+K+LS +
Sbjct: 276 LQLQIKLLSSDEM 288
Score = 46 (21.3 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 10 SSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFV 69
SSS++S + +S ++ +++ G Y D + +GI+++ A +
Sbjct: 65 SSSAYSSTTSSNSASGSFTLIAPRSEYE----GYYVSDSNEAALGISIQEQGAAQFMDAI 120
Query: 70 LGEESEYGID 79
L + G D
Sbjct: 121 LNRNGDPGFD 130
>TAIR|locus:2026037 [details] [associations]
symbol:FBH3 "AT1G51140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0048573 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC079828 EMBL:AY034941 EMBL:AY063120
IPI:IPI00519239 PIR:H96548 RefSeq:NP_564583.1 UniGene:At.19155
ProteinModelPortal:Q9C690 SMR:Q9C690 PaxDb:Q9C690 PRIDE:Q9C690
EnsemblPlants:AT1G51140.1 GeneID:841537 KEGG:ath:AT1G51140
TAIR:At1g51140 eggNOG:NOG312535 HOGENOM:HOG000242890
InParanoid:Q9C690 OMA:TKDEDSA PhylomeDB:Q9C690
ProtClustDB:CLSN2917227 Genevestigator:Q9C690 Uniprot:Q9C690
Length = 379
Score = 188 (71.2 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSN-KTDKASMLDEIIDYVKFLQL 345
++RA+RG AT P SIAER+RR KI+ERM+ LQ+LVPN + +T+ A MLD + Y+K LQ
Sbjct: 303 KIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQE 362
Query: 346 QVKVLSMSR 354
QVK L SR
Sbjct: 363 QVKALEESR 371
>UNIPROTKB|Q6Z9R3 [details] [associations]
symbol:P0461F06.33 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000145
eggNOG:NOG315110 EMBL:AP004693 EnsemblPlants:LOC_Os08g36740.1
OMA:SAMREMI Uniprot:Q6Z9R3
Length = 246
Score = 176 (67.0 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 295 ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
+TDP S+A R+RRE+I+ER++ LQ LVP K D ASMLDE I YVKFL+ QV+ S+ R
Sbjct: 158 STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQ--SLER 215
Query: 355 LGAAGAVLP 363
AA P
Sbjct: 216 AAAANGHRP 224
>UNIPROTKB|Q6ZFY4 [details] [associations]
symbol:OJ1311_H06.19 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003983
EMBL:AP004161 Uniprot:Q6ZFY4
Length = 298
Score = 183 (69.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 43/102 (42%), Positives = 62/102 (60%)
Query: 269 QQTASANPTGGCNGTGKARVRARRGQAT---DPHSIAERLRREKIAERMKNLQELVPNSN 325
+ + + +P+ G G+ +A+ T DP S+A + RRE+I+ER++ LQELVPN
Sbjct: 175 ESSQAMSPSKKQCGAGRKAGKAKSAPTTPTKDPQSLAAKNRRERISERLRILQELVPNGT 234
Query: 326 KTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAA-GAVLPLIT 366
K D +ML++ I YVKFLQLQVKVL+ A G P I+
Sbjct: 235 KVDLVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKAPEIS 276
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 185 (70.2 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 43/107 (40%), Positives = 68/107 (63%)
Query: 291 RRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVL 350
RR +A + H+++ER RR++I E+++ LQELVP+ NKTDKAS+LDE I+Y+K LQ+QV+++
Sbjct: 225 RRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIM 284
Query: 351 SMSRLGAAGAVLPLITDG--QAEASKGLSLSPQADQGVDIS-LNSDQ 394
M+ ++P++ G Q G+ L+ G LN Q
Sbjct: 285 WMTT-----GIVPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQMQ 326
>UNIPROTKB|Q7XT55 [details] [associations]
symbol:OSJNBa0084K20.3 "OSJNBa0076N16.1 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000141 EMBL:AL606613 EMBL:AL731617 Uniprot:Q7XT55
Length = 218
Score = 164 (62.8 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
RVRA+RG AT P SIAER RR +I+E+++ LQ LVPN +K T + MLD +D++K LQ
Sbjct: 133 RVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQS 192
Query: 346 QVKVL 350
Q++ L
Sbjct: 193 QLQTL 197
>UNIPROTKB|Q67TR8 [details] [associations]
symbol:B1342C04.6 "Basic helix-loop-helix (BHLH)-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP005655 EMBL:AP006057
EMBL:AK060477 EMBL:AK070458 RefSeq:NP_001063357.1 UniGene:Os.51063
EnsemblPlants:LOC_Os09g28210.1 GeneID:4347252 KEGG:osa:4347252
OMA:AYPAFHA ProtClustDB:CLSN2697769 Uniprot:Q67TR8
Length = 236
Score = 170 (64.9 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 356
DP S+A RLRRE+I+ER++ LQ LVP K D ASMLDE I YVKFL+ QV+ S+ R
Sbjct: 150 DPQSVAARLRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQ--SLERAA 207
Query: 357 AA-GA 360
AA GA
Sbjct: 208 AATGA 212
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 180 (68.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 37/76 (48%), Positives = 54/76 (71%)
Query: 282 GTGKAR--VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDY 339
GT +AR ++R +A H ++ER RR+KI E MK LQEL+P KTD++SMLD++I+Y
Sbjct: 263 GTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEY 322
Query: 340 VKFLQLQVKVLSMSRL 355
VK LQ Q+++ SM +
Sbjct: 323 VKSLQSQIQMFSMGHV 338
Score = 40 (19.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 209 MNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPN 246
++HD+ + +G D I++ S+ +V + + P+
Sbjct: 10 LSHDLISPEKYIMGEDDIVELLGKSSQVVTSSQTQTPS 47
>UNIPROTKB|Q69TX2 [details] [associations]
symbol:P0021C04.13 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004687
ProteinModelPortal:Q69TX2 EnsemblPlants:LOC_Os06g10820.1
Gramene:Q69TX2 HOGENOM:HOG000241748 Uniprot:Q69TX2
Length = 211
Score = 155 (59.6 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 287 RVRARRGQ-ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQL 345
R R R + +++P S+A RLRRE++++RM+ LQ LVP + D ASML+E I YVKFL+
Sbjct: 112 RPRRRNARVSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRYVKFLKG 171
Query: 346 QVKVLSMSRLGAA 358
V+ S+ R AA
Sbjct: 172 HVQ--SLERAAAA 182
>UNIPROTKB|Q8W5G3 [details] [associations]
symbol:OSJNBa0002J24.23 "Helix-loop-helix DNA-binding
domain containing protein, expressed" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000140 HOGENOM:HOG000240244 EMBL:AC090713
EnsemblPlants:LOC_Os03g55550.1 eggNOG:NOG237829 OMA:WIWERRR
Uniprot:Q8W5G3
Length = 310
Score = 170 (64.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 282 GTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVK 341
G G +V ARR AT S+ R RRE+I R++ LQ+LVPN K D ++ML+E + YVK
Sbjct: 204 GGGNGKVPARRRSATIAQSLYARRRRERINGRLRILQKLVPNGTKVDISTMLEEAVHYVK 263
Query: 342 FLQLQVKV 349
FLQLQ+KV
Sbjct: 264 FLQLQIKV 271
>UNIPROTKB|Q9ASJ3 [details] [associations]
symbol:P0439B06.24 "Putative uncharacterized protein
P0439B06.24" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP002882 UniGene:Os.30617
ProteinModelPortal:Q9ASJ3 Gramene:Q9ASJ3 OMA:KAITYVK
ProtClustDB:CLSN2918925 Uniprot:Q9ASJ3
Length = 294
Score = 169 (64.5 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 298 PHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGA 357
P S A ++RRE+I+ER+K LQ+LVPN K D +ML++ I+YVKFLQLQVKVL+
Sbjct: 208 PQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVLATDEFWP 267
Query: 358 A-GAVLP 363
A G P
Sbjct: 268 AQGGKAP 274
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 160 (61.4 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS 351
DP S+A R RRE+I+ER++ LQ LVP K D ASMLDE I YVKFL+ Q+++L+
Sbjct: 128 DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLN 182
>TAIR|locus:2155543 [details] [associations]
symbol:HEC1 "HECATE 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010500 "transmitting tissue
development" evidence=IGI] [GO:0048462 "carpel formation"
evidence=IMP] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:AF488618 EMBL:AK228927 IPI:IPI00530790
RefSeq:NP_201507.1 UniGene:At.28829 ProteinModelPortal:Q9FHA7
SMR:Q9FHA7 IntAct:Q9FHA7 EnsemblPlants:AT5G67060.1 GeneID:836841
KEGG:ath:AT5G67060 TAIR:At5g67060 eggNOG:NOG267961
HOGENOM:HOG000242863 InParanoid:Q9FHA7 OMA:FLFNSTH PhylomeDB:Q9FHA7
ProtClustDB:CLSN2684406 Genevestigator:Q9FHA7 GO:GO:0048462
GO:GO:0010500 Uniprot:Q9FHA7
Length = 241
Score = 163 (62.4 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 40/83 (48%), Positives = 49/83 (59%)
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL- 355
DP S+A R RRE+I+ER++ LQ LVP K D ASMLDE I YVKFL+ QV+ L +
Sbjct: 131 DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEQAVV 190
Query: 356 ---GAAGAVLPLITDGQAEASKG 375
G G LI G A+ G
Sbjct: 191 TGGGGGGGGRVLIGGGGMTAASG 213
>TAIR|locus:2074865 [details] [associations]
symbol:HEC2 "AT3G50330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] [GO:0080126 "ovary
septum development" evidence=IGI] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL132976
HOGENOM:HOG000242863 ProtClustDB:CLSN2684406 GO:GO:0048462
GO:GO:0010500 EMBL:BT010607 EMBL:AK175679 EMBL:AK175912
EMBL:AK176020 IPI:IPI00532987 PIR:T45579 RefSeq:NP_190602.1
UniGene:At.35505 ProteinModelPortal:Q9SND4 SMR:Q9SND4 IntAct:Q9SND4
EnsemblPlants:AT3G50330.1 GeneID:824195 KEGG:ath:AT3G50330
TAIR:At3g50330 eggNOG:NOG315110 InParanoid:Q9SND4 OMA:NANMAAM
PhylomeDB:Q9SND4 Genevestigator:Q9SND4 GO:GO:0080126 Uniprot:Q9SND4
Length = 231
Score = 157 (60.3 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVL 350
DP S+A R RRE+I+ER++ LQ LVP K D ASMLDE I YVKFL+ QV+ L
Sbjct: 128 DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 181
Score = 38 (18.4 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 103 MNRSLKLGNVGLQYDPAIPT-LGSMNLG-SPKQLPLIGEMTTSPSFVDSEH 151
M+ S L N+ +Q +P + N +P + ++ E T P F + H
Sbjct: 1 MDNSDILMNMMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTH 51
>TAIR|locus:2076581 [details] [associations]
symbol:AT3G57800 "AT3G57800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL049660 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000037005 ProtClustDB:CLSN2680198
EMBL:AF488593 EMBL:AL132977 EMBL:AY139773 EMBL:BT003037
EMBL:AY085849 IPI:IPI00532305 IPI:IPI00535946 PIR:T46002
RefSeq:NP_567057.2 RefSeq:NP_850745.1 UniGene:At.34797
ProteinModelPortal:Q3EAI1 EnsemblPlants:AT3G57800.1 GeneID:825530
KEGG:ath:AT3G57800 TAIR:At3g57800 eggNOG:NOG254513
InParanoid:Q3EAI1 OMA:MVASANL PhylomeDB:Q3EAI1
Genevestigator:Q3EAI1 Uniprot:Q3EAI1
Length = 426
Score = 144 (55.7 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 32/42 (76%), Positives = 34/42 (80%)
Query: 288 VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TD 328
VRARRGQATD HS+AER RREKI RMK LQELVP +K TD
Sbjct: 204 VRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTD 245
Score = 72 (30.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 330 ASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDIS 389
A +LDEII++V+ LQ QV++LSM RL A + D + G SL + +
Sbjct: 294 ALVLDEIINHVQSLQRQVEMLSM-RLAAVNPRIDFNLDTILASENG-SLMDGSFNAAPMQ 351
Query: 390 LNSDQIAFEEE 400
L Q A E E
Sbjct: 352 LAWPQQAIETE 362
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 171 (65.3 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 281 NGTGKAR--VRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIID 338
+GT +AR +R + + H++AER RREKI E+MK LQ+L+P NK+ K S LD+ I+
Sbjct: 240 HGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIE 299
Query: 339 YVKFLQLQVKVLSMSRLGAAG 359
YVK LQ Q++ + MS + AG
Sbjct: 300 YVKSLQSQIQGM-MSPMMNAG 319
>TAIR|locus:2126856 [details] [associations]
symbol:IND "AT4G00120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010197 "polar nucleus fusion" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161471
GO:GO:0010197 EMBL:AF069299 EMBL:BT029443 EMBL:AF488578
IPI:IPI00532644 PIR:T01340 RefSeq:NP_191923.1 UniGene:At.34598
ProteinModelPortal:O81313 SMR:O81313 IntAct:O81313 STRING:O81313
PRIDE:O81313 EnsemblPlants:AT4G00120.1 GeneID:827911
KEGG:ath:AT4G00120 TAIR:At4g00120 eggNOG:NOG274244
HOGENOM:HOG000113070 InParanoid:O81313 OMA:DWNKAND PhylomeDB:O81313
ProtClustDB:CLSN2916160 Genevestigator:O81313 Uniprot:O81313
Length = 198
Score = 147 (56.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM-SRL 355
DP ++ R RRE+I+E+++ L+ +VP K D ASMLDE I Y KFL+ QV++L S++
Sbjct: 121 DPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQI 180
Query: 356 GA 357
GA
Sbjct: 181 GA 182
>UNIPROTKB|Q5MP56 [details] [associations]
symbol:BA1 "Uncharacterized protein" species:4577 "Zea
mays" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY683001 EMBL:AY683002
EMBL:BT062649 RefSeq:NP_001105271.1 UniGene:Zm.18382 IntAct:Q5MP56
GeneID:542186 KEGG:zma:542186 HOGENOM:HOG000238432 OMA:MLEQAIH
Uniprot:Q5MP56
Length = 219
Score = 154 (59.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 39/108 (36%), Positives = 58/108 (53%)
Query: 245 PNHPLSCFSSRPLPTV---PTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSI 301
P H + + R P + P + P + GG G+G AR R +TDP S+
Sbjct: 3 PYHYQTMYDPRGFPIIHPQPYLQHPVAGALGDSRVRGG--GSG-ARRRPGAKLSTDPQSV 59
Query: 302 AERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKV 349
A R RR +I++R + L+ LVP +K D SML++ I YVKFL+ Q+ +
Sbjct: 60 AARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKTQISL 107
>UNIPROTKB|Q5TKP7 [details] [associations]
symbol:OJ1362_G11.11 "Putative uncharacterized protein
OJ1362_G11.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC104713 ProteinModelPortal:Q5TKP7
EnsemblPlants:LOC_Os05g46370.1 KEGG:dosa:Os05t0541400-00
Gramene:Q5TKP7 HOGENOM:HOG000238211 Uniprot:Q5TKP7
Length = 416
Score = 165 (63.1 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 52/156 (33%), Positives = 80/156 (51%)
Query: 255 RPLPTVP-TVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAER 313
R P P T+G P+ S+ P + VR ++DP ++A RLRRE+++ER
Sbjct: 267 RAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRI----SSDPQTVAARLRRERVSER 322
Query: 314 MKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEAS 373
++ LQ LVP +K D A+MLDE Y+KFL+ Q++ L LG L+ G S
Sbjct: 323 LRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALET--LGNGNGNGNLLHHGYYTGS 380
Query: 374 KGLSLSPQADQGVDISLNSDQIAFEEE-VVKLMESN 408
+ + + A G S NS +AF + + ++SN
Sbjct: 381 RNATAT--AATG---SSNSTVLAFGRDGLAGFVKSN 411
>UNIPROTKB|Q8S0N2 [details] [associations]
symbol:P0692C11.41-1 "BHLH transcription factor-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 EMBL:AP003381 EMBL:AP003273 EMBL:AK106119
RefSeq:NP_001044022.1 UniGene:Os.25546 GeneID:4327679
KEGG:osa:4327679 eggNOG:NOG254276 OMA:EPDMEAM
ProtClustDB:CLSN2919059 Uniprot:Q8S0N2
Length = 393
Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 282 GTGKARVRARRGQ---ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIID 338
GT A + RR ++DP ++A RLRRE++++R++ LQ+LVP NK D ASMLDE
Sbjct: 266 GTEAAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQKLVPGGNKMDTASMLDEAAS 325
Query: 339 YVKFLQLQVKVL 350
Y+KFL+ QV+ L
Sbjct: 326 YLKFLKSQVQKL 337
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 163 (62.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 39/103 (37%), Positives = 62/103 (60%)
Query: 253 SSRPLPTVPTVGLPSLQQTASANPTGGCNGT--GKA-RVRARRGQATDPHSIAERLRREK 309
S R L T T + + T G G+A R RRG+A H+ +ER RR++
Sbjct: 122 SGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDR 181
Query: 310 IAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM 352
I +RM+ LQ+L+P ++K DK S+LD++I+++K LQ QV+ +S+
Sbjct: 182 INQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSL 224
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 157 (60.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 289 RARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVK 348
R + + D S+ + RRE+I ER++ LQ+LVPN K D ++ML+E + YVKFLQLQ+K
Sbjct: 156 RGHKQCSKDTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIK 215
Query: 349 VLS 351
+LS
Sbjct: 216 LLS 218
>UNIPROTKB|Q651K2 [details] [associations]
symbol:B1089G05.30 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CM000143 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005967 EnsemblPlants:LOC_Os06g30090.1 Uniprot:Q651K2
Length = 294
Score = 159 (61.0 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 223 MDKILQFDYLSASIVAKGEQELPNHPLSCFSS---------RPLPTVPTVGLPSLQQTAS 273
MD + + ++ G + P SCFSS T P S Q +
Sbjct: 114 MDMDMDAHGAAPPLIGYGPTAATSSPSSCFSSGGSGDSGMVMVTTTTPRSAAASGSQRRA 173
Query: 274 ANPTGGCNGTGKARV-RARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASM 332
P G+ + +R + S A + RRE+I+ER++ LQELVP+ K D +M
Sbjct: 174 RPPPSPLQGSELHEYSKKQRANNKETQSSAAKSRRERISERLRALQELVPSGGKVDMVTM 233
Query: 333 LDEIIDYVKFLQLQVKVL 350
LD I YVKF+Q+Q++VL
Sbjct: 234 LDRAISYVKFMQMQLRVL 251
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 144 (55.7 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 295 ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
A S + RR++I ER++ LQEL+PN K D ++ML+E I YVKFL LQ+K+LS
Sbjct: 115 AESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHLQIKLLSSDE 174
Query: 355 L 355
+
Sbjct: 175 M 175
>TAIR|locus:2045263 [details] [associations]
symbol:AT2G31730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009723 "response to
ethylene stimulus" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 EMBL:CP002685 GO:GO:0003700
GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240890 OMA:SKGLCLV EMBL:AJ576041 IPI:IPI00539360
RefSeq:NP_180732.3 UniGene:At.38180 ProteinModelPortal:Q7XJU1
SMR:Q7XJU1 DNASU:817730 EnsemblPlants:AT2G31730.1 GeneID:817730
KEGG:ath:AT2G31730 TAIR:At2g31730 InParanoid:Q7XJU1
PhylomeDB:Q7XJU1 ProtClustDB:CLSN2687695 Genevestigator:Q7XJU1
Uniprot:Q7XJU1
Length = 153
Score = 141 (54.7 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 289 RARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVK 348
+ +R +++D S + + R++K+AER+ LQ+LV KTD AS+L E + Y++FLQ QVK
Sbjct: 25 KIKRHKSSDL-SFSSKERKDKLAERISALQQLVSPYGKTDTASVLLEGMQYIQFLQEQVK 83
Query: 349 VLSMSRLGAAGAVLPLITDGQAEASKGLSLSP 380
VLS L A + + + SKGL L P
Sbjct: 84 VLSAPYLQATPSTTEEEVEEYSLRSKGLCLVP 115
>UNIPROTKB|Q75IG3 [details] [associations]
symbol:P0499F10.3 "Putative uncharacterized protein
P0499F10.3" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
ProtClustDB:CLSN2691249 EMBL:AC132487 RefSeq:NP_001054971.2
UniGene:Os.10063 EnsemblPlants:LOC_Os05g14010.1 GeneID:4338155
KEGG:osa:4338155 Uniprot:Q75IG3
Length = 268
Score = 157 (60.3 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 53/202 (26%), Positives = 95/202 (47%)
Query: 244 LPNHPLSCFS----SRPLPTVPTVGLPSLQQTA-SANPTGGCNGT--GKARVRARRGQAT 296
+ + P SC + S L T P L+ +++ + CN T G A +AR QA+
Sbjct: 58 MASSPRSCITTSLGSNMLDFSNTAAPPELRSHHHNSDNSSECNSTATGSALKKARV-QAS 116
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 356
++R+E++ +R+ L ++V KTD AS+L E I Y++FL Q++ LS +G
Sbjct: 117 SSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLSQIEALSYPYMG 176
Query: 357 AAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQYL 416
A P+ E + GL P+ G ++ N + A + + + L
Sbjct: 177 DANGTGPMQNGPVGERNPGLF--PEYP-GQLLNHNGNTGAQQPAAQPEQQGANDDGKKDL 233
Query: 417 QNKGLCLMPIALATAISSGKAS 438
+++GLCL+P++ + A+
Sbjct: 234 RSRGLCLVPVSCTSHFGGDNAA 255
>UNIPROTKB|Q657D1 [details] [associations]
symbol:P0697C12.40 "BHLH transcription-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003141
EMBL:AP003296 Uniprot:Q657D1
Length = 484
Score = 163 (62.4 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 43/116 (37%), Positives = 68/116 (58%)
Query: 268 LQQTASANP-TGGCNGTGKARVRARRGQ-ATDPHSIAERLRREKIAERMKNLQELVPNSN 325
+ + A+ P T G G+ R R R + ++DP ++A R RRE+I+ER++ LQ+LVP
Sbjct: 343 IYRAAAMRPVTLGAEDAGE-RPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGA 401
Query: 326 KTDKASMLDEIIDYVKFLQLQVKVL-SMSRLGAAGAVLPLITDGQAEASKGLSLSP 380
K D ASMLDE +Y++FL+ Q++ L ++ R A + + T A + S SP
Sbjct: 402 KMDTASMLDEAANYLRFLKSQIRELQTLDRRNYPNAAMSINT--AAATTMATSSSP 455
>TAIR|locus:2039094 [details] [associations]
symbol:AIB "AT2G46510" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009611 "response to wounding" evidence=IEP;RCA]
[GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP]
[GO:0006612 "protein targeting to membrane" evidence=RCA]
[GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
"response to water deprivation" evidence=RCA] [GO:0009620 "response
to fungus" evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic
process" evidence=RCA] [GO:0009723 "response to ethylene stimulus"
evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
stimulus" evidence=RCA] [GO:0009863 "salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0009737
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009611
GO:GO:0009738 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AC006526 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006418
EMBL:AY094399 IPI:IPI00535471 PIR:G84903 RefSeq:NP_566078.1
UniGene:At.19872 ProteinModelPortal:Q9ZPY8 SMR:Q9ZPY8 PaxDb:Q9ZPY8
PRIDE:Q9ZPY8 EnsemblPlants:AT2G46510.1 GeneID:819262
KEGG:ath:AT2G46510 TAIR:At2g46510 eggNOG:NOG313259
HOGENOM:HOG000238207 InParanoid:Q9ZPY8 OMA:KIMEDER PhylomeDB:Q9ZPY8
ProtClustDB:CLSN2917347 Genevestigator:Q9ZPY8 InterPro:IPR025610
Pfam:PF14215 Uniprot:Q9ZPY8
Length = 566
Score = 154 (59.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 51/183 (27%), Positives = 88/183 (48%)
Query: 250 SCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREK 309
SC RP+ + G+ S+ G G R + + H AER RREK
Sbjct: 355 SCTEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANG-------REEPLN-HVEAERQRREK 406
Query: 310 IAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQ 369
+ +R L+ +VPN +K DKAS+L + I Y+K LQ +VK++ R+G TD
Sbjct: 407 LNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVG---------TDKS 457
Query: 370 AEASKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESN-VTKAMQYLQNKGLCLMPIAL 428
S +++ + VDI ++++ V+ ++S+ ++ +Q ++N + LM L
Sbjct: 458 LSESNTITVEESPE--VDIQAMNEEVVVR--VISPLDSHPASRIIQAMRNSNVSLMEAKL 513
Query: 429 ATA 431
+ A
Sbjct: 514 SLA 516
Score = 54 (24.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 5 LDHYFSSSSWSDVNAKERSSWDYSEPLQQNQLLPNSIGVYKDDEKNSPVGIAMEGLAAQD 64
LD F+ SW N + ++ Y+ ++L N V ++ + + A +AA
Sbjct: 283 LDERFTPQSWEGYNNNKGPTFGYTPQRDDVKVLENVNMVVDNNNYKTQIEFAGSSVAASS 342
Query: 65 T-SSFVLGEESEYGIDKNLLS 84
S+ E+SE +K +S
Sbjct: 343 NPSTNTQQEKSESCTEKRPVS 363
>TAIR|locus:2041369 [details] [associations]
symbol:PIL1 "phytochrome interacting factor 3-like 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009641 "shade
avoidance" evidence=IEP] [GO:0010017 "red or far-red light
signaling pathway" evidence=IEP;IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 EMBL:AC004411 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0010017 GO:GO:0009641 HOGENOM:HOG000115543
ProtClustDB:CLSN2680935 EMBL:AB090873 EMBL:AY219127 EMBL:AY954840
IPI:IPI00545843 PIR:T02190 RefSeq:NP_182220.2 UniGene:At.36425
ProteinModelPortal:Q8L5W8 SMR:Q8L5W8 IntAct:Q8L5W8 STRING:Q8L5W8
PRIDE:Q8L5W8 EnsemblPlants:AT2G46970.1 GeneID:819311
KEGG:ath:AT2G46970 TAIR:At2g46970 eggNOG:NOG291407
InParanoid:Q8L5W8 OMA:MELVCEN PhylomeDB:Q8L5W8
Genevestigator:Q8L5W8 Uniprot:Q8L5W8
Length = 416
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 286 ARVR---ARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
AR R +R ++T+ H + ER RR++ ++M+ LQ+L+PN K DKAS+LDE I Y++
Sbjct: 218 ARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRT 277
Query: 343 LQLQVKVLSMSR-LGAAGAVLPL 364
LQLQV+++SM L +LP+
Sbjct: 278 LQLQVQMMSMGNGLIRPPTMLPM 300
>TAIR|locus:2089418 [details] [associations]
symbol:AT3G21330 "AT3G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP001305 EMBL:AF488617 EMBL:BT004279 EMBL:BT020364
IPI:IPI00541948 RefSeq:NP_188770.1 UniGene:At.38078
ProteinModelPortal:Q8S3D2 SMR:Q8S3D2 EnsemblPlants:AT3G21330.1
GeneID:821687 KEGG:ath:AT3G21330 TAIR:At3g21330 eggNOG:NOG330001
HOGENOM:HOG000095219 InParanoid:Q9LIG3 OMA:LMARELC PhylomeDB:Q8S3D2
ProtClustDB:CLSN2685101 Genevestigator:Q8S3D2 Uniprot:Q8S3D2
Length = 373
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 295 ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
+TDP ++A R RRE+I+E+++ LQ LVP K D ASMLDE +Y+KFL+ QVK L R
Sbjct: 276 STDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLR 335
>TAIR|locus:2205455 [details] [associations]
symbol:BIM2 "AT1G69010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC011665 EMBL:BT002352 EMBL:AY080650 EMBL:AY086798
EMBL:AF488627 IPI:IPI00519398 PIR:E96714 RefSeq:NP_177064.1
UniGene:At.35458 ProteinModelPortal:Q9CAA4 SMR:Q9CAA4 PaxDb:Q9CAA4
PRIDE:Q9CAA4 EnsemblPlants:AT1G69010.1 GeneID:843233
KEGG:ath:AT1G69010 TAIR:At1g69010 eggNOG:NOG246683
HOGENOM:HOG000070523 InParanoid:Q9CAA4 OMA:YVQYLQE PhylomeDB:Q9CAA4
ProtClustDB:CLSN2682349 Genevestigator:Q9CAA4 GermOnline:AT1G69010
Uniprot:Q9CAA4
Length = 311
Score = 137 (53.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 35/83 (42%), Positives = 49/83 (59%)
Query: 267 SLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSN- 325
S ++ S+N T N K +A HS+ E+ RR KI ER + L+EL+PNS
Sbjct: 20 SKREGPSSNTTVHSNRDSKENDKA--SAIRSKHSVTEQRRRSKINERFQILRELIPNSEQ 77
Query: 326 KTDKASMLDEIIDYVKFLQLQVK 348
K D AS L E+IDYV++LQ +V+
Sbjct: 78 KRDTASFLLEVIDYVQYLQEKVQ 100
Score = 61 (26.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 361 VLPLITDGQAE----ASKGLSLSPQ-ADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQY 415
+LP++ QA S GL S +G IS++S A+ E++ S++T+A
Sbjct: 199 ILPMVQGEQANECPATSDGLGQSNDLVIEGGTISISS---AYSHELL----SSLTQA--- 248
Query: 416 LQNKGLCLMPIALATAISSGKASSSDTISEE 446
LQN G+ L L+ I GK ++ EE
Sbjct: 249 LQNAGIDLSQAKLSVQIDLGKRANQGLTHEE 279
>TAIR|locus:2115683 [details] [associations]
symbol:AT4G05170 "AT4G05170" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AL161503 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000095220 EMBL:BT015446 IPI:IPI00532427 IPI:IPI01019413
PIR:A85065 RefSeq:NP_192426.2 UniGene:At.51015
ProteinModelPortal:Q9M0X8 SMR:Q9M0X8 DNASU:825865 GeneID:825865
KEGG:ath:AT4G05170 TAIR:At4g05170 eggNOG:NOG256664 PhylomeDB:Q9M0X8
ArrayExpress:Q9M0X8 Genevestigator:Q9M0X8 Uniprot:Q9M0X8
Length = 298
Score = 131 (51.2 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 304 RLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAV 361
++R+EK+ +R+ LQ+LV KTD AS+L+E ++Y+KFLQ QV VLS G+V
Sbjct: 173 KVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGSV 230
Score = 60 (26.2 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 416 LQNKGLCLMPIALATAISSGKASSSD 441
L ++GLCLMPI+ + +++ AS+++
Sbjct: 260 LSSRGLCLMPISASYPVAAAAASAAE 285
Score = 39 (18.8 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 149 SEHVGGNSSELSDIQRSLRDLQTISPSP 176
SE + NS E S L+T+SP P
Sbjct: 143 SEELEENSDEYSPRLLKRPRLETLSPLP 170
>TAIR|locus:505006103 [details] [associations]
symbol:AT1G05805 "AT1G05805" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC009999 HOGENOM:HOG000242890 EMBL:BT000954 EMBL:AY086106
IPI:IPI00516925 PIR:F86192 RefSeq:NP_563749.1 UniGene:At.11933
ProteinModelPortal:Q8H102 SMR:Q8H102 IntAct:Q8H102 STRING:Q8H102
PaxDb:Q8H102 PRIDE:Q8H102 EnsemblPlants:AT1G05805.1 GeneID:837090
KEGG:ath:AT1G05805 TAIR:At1g05805 eggNOG:NOG249421
InParanoid:Q8H102 OMA:NEVNETP PhylomeDB:Q8H102
ProtClustDB:CLSN2687697 Genevestigator:Q8H102 Uniprot:Q8H102
Length = 362
Score = 148 (57.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 287 RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK-TDKASMLDEIIDYVKFLQL 345
++RA+RG AT P SIAER RR +I+ ++K LQ+LVPN +K T + MLD + ++K LQ
Sbjct: 282 KIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQH 341
Query: 346 QVKVL 350
Q++ L
Sbjct: 342 QLQNL 346
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 269 QQTASANPTGGCNG-TGKARVRAR 291
Q T+ +P GG NG G +R++++
Sbjct: 164 QPTSDYSPQGGSNGGRGHSRLKSQ 187
>TAIR|locus:2098008 [details] [associations]
symbol:PIL2 "phytochrome interacting factor 3-like 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010017 "red or far-red light signaling
pathway" evidence=IEP] [GO:0010089 "xylem development"
evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
process" evidence=RCA] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 GO:GO:0010017
EMBL:AL138651 EMBL:AB090874 EMBL:BT033108 IPI:IPI00525935
IPI:IPI00846835 PIR:T48001 RefSeq:NP_001078329.1 RefSeq:NP_191768.2
UniGene:At.1005 UniGene:At.50304 ProteinModelPortal:Q8L5W7
SMR:Q8L5W7 IntAct:Q8L5W7 STRING:Q8L5W7 EnsemblPlants:AT3G62090.2
GeneID:825382 KEGG:ath:AT3G62090 TAIR:At3g62090 eggNOG:NOG305930
HOGENOM:HOG000115543 InParanoid:Q8L5W7 OMA:ETNMLES PhylomeDB:Q8L5W7
ProtClustDB:CLSN2680935 Genevestigator:Q8L5W7 Uniprot:Q8L5W7
Length = 363
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 38/104 (36%), Positives = 61/104 (58%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
T KA V+ +R + ++ ER +R I ++M+ LQ L+PNS+K D SMLDE I+Y+
Sbjct: 179 TRKALVKRKRN--AEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTN 236
Query: 343 LQLQVKVLSM-SRLGAAGAVLPLITDGQAEASKGLSLSPQADQG 385
LQLQV++++M +R ++PL G + GL++ G
Sbjct: 237 LQLQVQMMTMGNRFVTPSMMMPL---GPNYSQMGLAMGVGMQMG 277
>UNIPROTKB|Q2QMM0 [details] [associations]
symbol:LOC_Os12g40710 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 Gramene:Q2QMM0 Uniprot:Q2QMM0
Length = 266
Score = 144 (55.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 39/125 (31%), Positives = 64/125 (51%)
Query: 255 RPLPTVPTVGLPSLQQTASANPTG--------GCNGTGKARVRARRGQATDPHSIAERLR 306
+ + +P V P++ + +++ +G + GKA +R A H++ E+ R
Sbjct: 38 KQMDNMPAVASPTMNKDEASDDSGERKKKKKKASSAAGKA---SRHRHAAGAHNLTEKRR 94
Query: 307 REKIAERMKNLQELVPN-SNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLI 365
R KI ER + LQ LVP NK+++AS LD+ I Y+K LQ Q++ S AA + P
Sbjct: 95 RFKITERFRTLQRLVPGCDNKSNQASTLDQTIQYMKSLQHQLEATSAVGSPAAAVLYPAA 154
Query: 366 TDGQA 370
Q+
Sbjct: 155 VHPQS 159
>UNIPROTKB|Q7X7U7 [details] [associations]
symbol:OSJNBb0091E11.4 "OJ990528_30.9 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008210
EMBL:CM000141 EMBL:AL606629 EMBL:AK059273 EMBL:AK101636
EMBL:AL662938 RefSeq:NP_001053182.1 UniGene:Os.55009
EnsemblPlants:LOC_Os04g41570.1 EnsemblPlants:LOC_Os04g41570.2
EnsemblPlants:LOC_Os04g41570.3 GeneID:4336261 KEGG:osa:4336261
eggNOG:NOG241248 OMA:SKGLCLV Uniprot:Q7X7U7
Length = 156
Score = 126 (49.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 39/122 (31%), Positives = 60/122 (49%)
Query: 271 TASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKA 330
T A T G + R + ++ + +++KI ER+ LQ+LV KTD A
Sbjct: 20 TGKAAVTSSSEEFGSMTSKKPRNTSPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTA 79
Query: 331 SMLDEIIDYVKFLQLQVKVLSMSRLGAA---GAVLPLITDGQAEASKGLSLSPQADQGVD 387
S+L E Y+KFL Q++VLS + A GA P D + ++GL L P DQ +
Sbjct: 80 SVLQEASGYIKFLHQQLEVLSSPYMRAPPVPGAA-PEDPDHYSLRNRGLCLVP-VDQTLQ 137
Query: 388 IS 389
++
Sbjct: 138 LT 139
>TAIR|locus:2090679 [details] [associations]
symbol:AT3G19500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB025624 EMBL:AY084520 EMBL:AF488631 IPI:IPI00518921
RefSeq:NP_566639.1 UniGene:At.38400 ProteinModelPortal:Q9LT67
SMR:Q9LT67 EnsemblPlants:AT3G19500.1 GeneID:821484
KEGG:ath:AT3G19500 TAIR:At3g19500 eggNOG:NOG294378
HOGENOM:HOG000240890 OMA:HVENSNG PhylomeDB:Q9LT67
ProtClustDB:CLSN2688564 Genevestigator:Q9LT67 Uniprot:Q9LT67
Length = 270
Score = 137 (53.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 201 GFYLQGATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQEL-PNH-PLSCFSSRPLP 258
GF G T + + +G Y D+ L +L S+ G +L P+ + C +S
Sbjct: 54 GFVFSGKTGSRMLCFSGG-YQNDDESL---FLEPSVPTSGVSDLDPSCIKIDCRNSNDAC 109
Query: 259 TVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQ 318
TV S ++ + K + +R Q IA ++R+E++ ER+ LQ
Sbjct: 110 TVDKSTKSSTKKRTGTGNGQESDQNRKPGKKGKRNQEKSSVGIA-KVRKERLGERIAALQ 168
Query: 319 ELVPNSNKTDKASMLDEIIDYVKFLQLQVKVL 350
+LV KTD AS+L E + Y+KFLQ Q++VL
Sbjct: 169 QLVSPYGKTDAASVLHEAMGYIKFLQDQIQVL 200
Score = 45 (20.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 404 LMESNVTKAMQY--LQNKGLCLMPIALATAISSGKAS 438
++ +V AM+ L+++GLCL+P++ + + +
Sbjct: 214 VVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGA 250
>UNIPROTKB|Q94HA7 [details] [associations]
symbol:OSJNBb0048A17.16 "Os03g0759700 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 eggNOG:NOG294378
EMBL:AC084282 EMBL:AK072833 RefSeq:NP_001051340.1 UniGene:Os.51847
EnsemblPlants:LOC_Os03g55220.1 EnsemblPlants:LOC_Os03g55220.2
GeneID:4334181 KEGG:osa:4334181 OMA:PTTECSS ProtClustDB:CLSN2694316
Uniprot:Q94HA7
Length = 317
Score = 138 (53.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 54/178 (30%), Positives = 85/178 (47%)
Query: 181 PTSY--EEVSSLSSVIEQPRTRGFYLQGATMNHDVDTTG-NRYVGMDKILQFDYLSASIV 237
P+SY +S ++ + P T YL +H + +G ++Y G D + Y V
Sbjct: 36 PSSYLSSPAASTTTAVASP-TCASYLAPHPYHHLLSFSGQDQYHG-DDVFGLQYYGGDQV 93
Query: 238 AKGEQELPNHPLS-CFSS-RPLPTVPTVGLPSLQQTASANPTG--GCNGTGKARVRARRG 293
+ P + C SS + + PT S ++ + G GC+ KA A
Sbjct: 94 IPAVVPQKSSPTTECSSSVSSMSSSPTATAISSSKSPAFKKKGSRGCDQR-KATAPAA-- 150
Query: 294 QATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS 351
AT + R+RRE++ ER+ LQ+LV K+D AS+L E + Y++FL QV+VLS
Sbjct: 151 -ATTTNK-RPRVRRERLGERIIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLS 206
Score = 47 (21.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 416 LQNKGLCLMPIALATAISSGKASS 439
L+++GLCL+PI+ ++ A +
Sbjct: 241 LRSRGLCLVPISCTEHVAGAGAGT 264
>UNIPROTKB|Q6ZA99 [details] [associations]
symbol:P0431A03.9 "Os08g0432800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:AP008214 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP004666 EMBL:AK109616 RefSeq:NP_001061870.1
UniGene:Os.56209 EnsemblPlants:LOC_Os08g33590.1 GeneID:4345648
KEGG:osa:4345648 eggNOG:NOG311977 OMA:TSAMMED
ProtClustDB:CLSN2697339 Uniprot:Q6ZA99
Length = 345
Score = 145 (56.1 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 41/112 (36%), Positives = 64/112 (57%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
T K + A+ A+ HS AER RR++I + L+ L+PN+ KTDKAS+L E+I++VK
Sbjct: 109 TAKEIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKE 168
Query: 343 LQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQ 394
L+ Q +M GAAG G+A A+ + L P D +++ +D+
Sbjct: 169 LKRQTS--AMMEDGAAG--------GEAAAAP-VVLLPTEDDELEVDAAADE 209
>TAIR|locus:2179122 [details] [associations]
symbol:APTX "APRATAXIN-like" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006790 "sulfur compound metabolic
process" evidence=IDA] [GO:0009150 "purine ribonucleotide metabolic
process" evidence=IDA] [GO:0047627 "adenylylsulfatase activity"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] InterPro:IPR011146
InterPro:IPR011598 InterPro:IPR015880 Pfam:PF00010 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS50888 PROSITE:PS51084 SMART:SM00353
SMART:SM00355 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 Gene3D:3.30.428.10 InterPro:IPR001310
SUPFAM:SSF54197 PROSITE:PS00892 InterPro:IPR019808 eggNOG:NOG278510
KO:K10863 PANTHER:PTHR12486 GO:GO:0006790 EMBL:AL161746
IPI:IPI00539681 PIR:T48153 RefSeq:NP_195751.1 UniGene:At.54671
ProteinModelPortal:Q9M041 SMR:Q9M041 PRIDE:Q9M041
EnsemblPlants:AT5G01310.1 GeneID:830940 KEGG:ath:AT5G01310
GeneFarm:3073 TAIR:At5g01310 HOGENOM:HOG000083464 InParanoid:Q9M041
OMA:GHEGNLQ PhylomeDB:Q9M041 ProtClustDB:CLSN2687115
BioCyc:ARA:AT5G01310-MONOMER Genevestigator:Q9M041 GO:GO:0047627
GO:GO:0009150 InterPro:IPR002589 Pfam:PF01661 PROSITE:PS51154
Uniprot:Q9M041
Length = 912
Score = 151 (58.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 283 TGKA-RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVK 341
TG R R+ +TDP S+A R RR +I++R K LQ +VP K D SMLDE I YVK
Sbjct: 31 TGNTKRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVK 90
Query: 342 FLQLQV 347
FL+ Q+
Sbjct: 91 FLKAQI 96
>UNIPROTKB|Q6K7V4 [details] [associations]
symbol:P0017G06.33 "Ethylene-responsive family
protein-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004770
EMBL:AP005536 KEGG:dosa:Os02t0276900-01 Uniprot:Q6K7V4
Length = 397
Score = 144 (55.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 48/171 (28%), Positives = 82/171 (47%)
Query: 280 CNGTGK-ARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIID 338
C T A + R Q P ++R+EK+ +R+ L +LV KTD AS+L E I
Sbjct: 212 CISTASGAAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIG 271
Query: 339 YVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQAD--QGVDISL---NSD 393
Y++FL Q++ LS LG G+ G ++ L P+A QG S+ +
Sbjct: 272 YIRFLHGQIEALSSPYLGNGGSSSNGGGGGGGGSNSKLQHQPEASRVQGERNSIFPEDPG 331
Query: 394 QIAFEEEVVKLMESNVTKAMQY-----LQNKGLCLMPIALAT--AISSGKA 437
Q+ + V K + + ++ + L+++GLCL+P++ + +G A
Sbjct: 332 QLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPA 382
>TAIR|locus:2204898 [details] [associations]
symbol:HFR1 "AT1G02340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007165 "signal transduction" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009585 "red, far-red light
phototransduction" evidence=TAS] [GO:0009642 "response to light
intensity" evidence=IEP] [GO:0009785 "blue light signaling pathway"
evidence=TAS] [GO:0003712 "transcription cofactor activity"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009738
"abscisic acid mediated signaling pathway" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003712
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC064879
GO:GO:0009642 GO:GO:0009785 EMBL:AF288287 EMBL:AF324245
EMBL:AF323182 EMBL:AK117248 IPI:IPI00545685 PIR:G86153
RefSeq:NP_563650.1 UniGene:At.24795 ProteinModelPortal:Q9FE22
SMR:Q9FE22 IntAct:Q9FE22 STRING:Q9FE22 PRIDE:Q9FE22
EnsemblPlants:AT1G02340.1 GeneID:839300 KEGG:ath:AT1G02340
TAIR:At1g02340 eggNOG:NOG274868 HOGENOM:HOG000112891 OMA:FSSHAMR
PhylomeDB:Q9FE22 ProtClustDB:CLSN2916946 Genevestigator:Q9FE22
GermOnline:AT1G02340 Uniprot:Q9FE22
Length = 292
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 304 RLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLP 363
R R EK++ +M+ LQ+LVPN +KTDK S+LD+ I+Y+K LQLQ+++ MS +G LP
Sbjct: 144 RRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQM--MSTVGVNPYFLP 201
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/101 (36%), Positives = 55/101 (54%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
K + R G A + H + E+ RR +I E+ K LQ LVP +K ++S LD I Y+K LQ
Sbjct: 144 KHKARRNPGYA-ETHGLTEKRRRSRINEKFKMLQRLVPGCDKCSQSSTLDRTIHYMKSLQ 202
Query: 345 LQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQG 385
Q++ + + + A AV P++ A A+ G P A QG
Sbjct: 203 QQLQAMYPTMVRPA-AVYPVVQPPPAFAAGG---PPAASQG 239
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 143 (55.4 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 46/138 (33%), Positives = 78/138 (56%)
Query: 281 NGTGKARVRARR---GQATD-PHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEI 336
+G + R R RR G+A H AER RREK+ +R L+ +VPN +K DKAS+L +
Sbjct: 412 SGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDA 471
Query: 337 IDYVKFLQLQVKVLSMSR--LG-AAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSD 393
+ Y+ L ++KV+ R LG ++ + L +D + S G ++ + + ++ S +
Sbjct: 472 VSYINELHAKLKVMEAERERLGYSSNPPISLDSDINVQTS-GEDVTVRINCPLE-SHPAS 529
Query: 394 QI--AFEEEVVKLMESNV 409
+I AFEE V+++ SN+
Sbjct: 530 RIFHAFEESKVEVINSNL 547
>UNIPROTKB|Q7XPS7 [details] [associations]
symbol:OSJNBa0065O17.4 "OSJNBa0065O17.4 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL606682
ProteinModelPortal:Q7XPS7 Gramene:Q7XPS7 Uniprot:Q7XPS7
Length = 567
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 60/222 (27%), Positives = 102/222 (45%)
Query: 232 LSASIVAKGEQELPNHPLSCF----SSRPLP-TVPTV-GLPSLQQTASANPTGGCNGTGK 285
++A+ A + N +SCF S++ VP V G+ S + G TG+
Sbjct: 319 VAAAAAANDVDGVANSQVSCFMAWKSAKSNEMAVPVVTGIESQKLLKKVVDCGARMSTGR 378
Query: 286 -ARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344
+R + H I+ER RREK+ E L+ +VP+ +K DKAS+L+E I Y+K L+
Sbjct: 379 GSRAALTQESGIKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLE 438
Query: 345 LQVKVLSMS------RLGAAGAVLPLITDGQAEASKGLSLSPQADQG-----VDISLNSD 393
+VK L S R G G+ S+ + +S D G V++++ +D
Sbjct: 439 KRVKELESSSEPSHQRATETGQQRRCEITGKELVSE-IGVSGGGDAGREHHHVNVTV-TD 496
Query: 394 QIAFEEEVVKLMESNVTKAMQYLQNKGLCLMPIALATAISSG 435
++ E + E +T+ + K LCL +++ + G
Sbjct: 497 KVVLLEVQCRWKELVMTRVFDAI--KSLCLDVLSVQASAPDG 536
>TAIR|locus:2007263 [details] [associations]
symbol:AT1G49830 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598
SMART:SM00353 EMBL:CP002684 Gene3D:4.10.280.10 SUPFAM:SSF47459
IPI:IPI00544298 RefSeq:NP_175405.2 UniGene:At.52101
ProteinModelPortal:F4I3E6 SMR:F4I3E6 EnsemblPlants:AT1G49830.1
GeneID:841406 KEGG:ath:AT1G49830 OMA:HETMGYI Uniprot:F4I3E6
Length = 250
Score = 121 (47.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 34/88 (38%), Positives = 47/88 (53%)
Query: 269 QQTASANPTGGCNGTG-----KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPN 323
Q S TG +G K R +R Q A ++++EK+ E++ LQ LV
Sbjct: 85 QSFRSNKKTGSADGHDRVCDPKPGKRCKRDQKKSSLGNA-KVKKEKVGEKITTLQHLVSP 143
Query: 324 SNKTDKASMLDEIIDYVKFLQLQVKVLS 351
KTD AS+L E + Y+KFLQ QV+VLS
Sbjct: 144 YGKTDAASVLHETMGYIKFLQDQVQVLS 171
Score = 54 (24.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 406 ESNVTKAMQYLQNKGLCLMPIALATAISS 434
E N T ++ L++ GLCL+P+A +++
Sbjct: 187 EVNPTMKVKELRSNGLCLVPLAWTVHVAN 215
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 138 (53.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 39/101 (38%), Positives = 53/101 (52%)
Query: 265 LPSLQQTASANPT---GGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELV 321
L +++ TA+A GG G G + A G D H IAER RREKI +R L ++
Sbjct: 134 LQAMETTATARAAVKKGG--GGGSSSSAAAPGYVQD-HIIAERRRREKINQRFIELSTVI 190
Query: 322 PNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVL 362
P K DKA++L + + YVK LQ +VK L G A +
Sbjct: 191 PGLKKMDKATILGDAVKYVKELQEKVKTLEEEDGGGRPAAM 231
>UNIPROTKB|Q5NB28 [details] [associations]
symbol:P0485D09.22 "Os01g0230200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008207 HOGENOM:HOG000005841 EMBL:AP001550
EMBL:AP001859 EMBL:AK065732 RefSeq:NP_001042492.2 UniGene:Os.38009
EnsemblPlants:LOC_Os01g13000.1 GeneID:4325885 KEGG:osa:4325885
ProtClustDB:CLSN2691249 Uniprot:Q5NB28
Length = 406
Score = 139 (54.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 44/150 (29%), Positives = 77/150 (51%)
Query: 280 CNGT--GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEII 337
CN T G A +AR QA+ ++R+E++ +R+ L ++V KTD AS+L E I
Sbjct: 231 CNSTETGSALKKARV-QASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETI 289
Query: 338 DYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIAF 397
Y++FL Q++ LS LG + P+ + G+ ++ G+ + Q A
Sbjct: 290 GYIRFLLGQIEALSYPYLGQCCSANPM------QQQTGIMAGERSTDGLFPEFPAGQDA- 342
Query: 398 EEEVVKLMESNVTKAMQYLQNKGLCLMPIA 427
E+ K ++ K L+++GLCL+P++
Sbjct: 343 -EKDGKKQQA---KKDDDLRSRGLCLVPVS 368
Score = 42 (19.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 138 GEMTTSPSFVDSEHVG-GNSSELSDIQRSLRDLQ-------TISPSPELWLP 181
GE+ +S VG GNSS S I SLR L SP+ L+LP
Sbjct: 6 GELKSSSLVQQMVWVGTGNSSS-SSIMGSLRQLPCSEEQDAASSPASMLFLP 56
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
T + + A+ A+ HS AER RRE+I + L+ ++PN+ KTDKAS+L E+I +VK
Sbjct: 162 TAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKE 221
Query: 343 LQLQVKVLSMSRL 355
L+ + V+S + L
Sbjct: 222 LKRETSVISETNL 234
>TAIR|locus:2137574 [details] [associations]
symbol:AT4G37850 "AT4G37850" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035709
EMBL:AL161592 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
ProtClustDB:CLSN2690865 EMBL:AF488567 IPI:IPI00544527 PIR:T06032
RefSeq:NP_195498.3 UniGene:At.31223 ProteinModelPortal:Q9T072
SMR:Q9T072 EnsemblPlants:AT4G37850.1 GeneID:829941
KEGG:ath:AT4G37850 TAIR:At4g37850 eggNOG:NOG262524
InParanoid:Q8S3F0 PhylomeDB:Q9T072 Genevestigator:Q9T072
Uniprot:Q9T072
Length = 328
Score = 136 (52.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 282 GTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVK 341
GT +A+ +R H IAER RREK+ +R L LVP K DKAS+L + + ++K
Sbjct: 136 GTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIK 195
Query: 342 FLQLQVKVLSMSRLGAAGAVLPLITDGQAEAS-KGLSLSPQADQGV-DISLNSDQIAFEE 399
+LQ +V L + + L+ + S S + G D+ L ++ F +
Sbjct: 196 YLQERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSD 255
Query: 400 E--VVKLM 405
E ++K++
Sbjct: 256 EDVLIKIL 263
>UNIPROTKB|Q2QML8 [details] [associations]
symbol:LOC_Os12g40730 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 KEGG:dosa:Os12t0599400-00
KEGG:dosa:Os12t0599550-00 Gramene:Q2QML8 HOGENOM:HOG000244163
Uniprot:Q2QML8
Length = 387
Score = 126 (49.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 34/93 (36%), Positives = 53/93 (56%)
Query: 270 QTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDK 329
++ A+P G C + R + G + D RR KI ER + LQ LVP +K+++
Sbjct: 194 KSKQASPRG-CRSSQPYR---KSGDSIDELFTKFHRRRFKITERFRTLQRLVPGCDKSNQ 249
Query: 330 ASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVL 362
AS LD+ I Y+K LQ Q+K +S+ +G+ A+L
Sbjct: 250 ASTLDQTIQYMKSLQHQLKAMSV--VGSPPALL 280
Score = 53 (23.7 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 22/106 (20%), Positives = 42/106 (39%)
Query: 34 NQLLPNSIGVYKDDEKNSPVGIAMEGLAAQDTSSFVLGEESEYGIDKNLLSEETQYEKDG 93
N+ P + G + DD+ IA + S++L E Y ++L E ++ G
Sbjct: 5 NRQDPEASGFFSDDDSGQTAAIAAAAAMENEDFSYMLREFDYYTSSEDLF--ELMWQGGG 62
Query: 94 QNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQLPLIGE 139
G SS ++ + + P P +G+ + PL+ +
Sbjct: 63 ---GGGASSFDQPPPPVSYH-RLSPPPPAMGTTTTTLLPEQPLVDD 104
>UNIPROTKB|Q75GI1 [details] [associations]
symbol:OSJNBa0013A09.16 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC145380
EMBL:AC135228 EMBL:AK120539 RefSeq:NP_001051131.1 UniGene:Os.7441
EnsemblPlants:LOC_Os03g51580.1 GeneID:4333965 KEGG:osa:4333965
OMA:DSCITEQ Uniprot:Q75GI1
Length = 359
Score = 135 (52.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 39/102 (38%), Positives = 50/102 (49%)
Query: 286 ARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQL 345
A +R H +AER RREK+++R L ++VP K DKAS+L + I YVK LQ
Sbjct: 169 AAAASRPASQNQEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQD 228
Query: 346 QVKVLSMS--RLGAAGAVLPLITDGQAEASKGLSLSPQADQG 385
QVK L R AVL + A+ G S D G
Sbjct: 229 QVKGLEEEARRRPVEAAVLVKKSQLSADDDDGSSCDENFDGG 270
>TAIR|locus:2141216 [details] [associations]
symbol:B70 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR011598 PROSITE:PS50805 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161554
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:EF637083 EMBL:AL031187 EMBL:EF182720
EMBL:AY065362 EMBL:AY122937 IPI:IPI00529333 PIR:T05176
RefSeq:NP_193865.2 UniGene:At.28517 ProteinModelPortal:Q8VZ22
SMR:Q8VZ22 EnsemblPlants:AT4G21340.1 GeneID:827884
KEGG:ath:AT4G21340 TAIR:At4g21340 eggNOG:NOG319921
HOGENOM:HOG000095220 OMA:NESRMIS PhylomeDB:Q8VZ22
ProtClustDB:CLSN2690318 Genevestigator:Q8VZ22 Uniprot:Q8VZ22
Length = 301
Score = 124 (48.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 296 TDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQV--KVLSMS 353
T H + ++R+EK+ +R+ LQ+LV KTD AS+L + IDY+KFLQ Q+ KV +
Sbjct: 182 TPSHFPSFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSP 241
Query: 354 RLGAAGA 360
L + G+
Sbjct: 242 HLNSIGS 248
Score = 50 (22.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 414 QYLQNKGLCLMPIA 427
Q L+++GLCLMPI+
Sbjct: 271 QDLRSRGLCLMPIS 284
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 133 (51.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 39/136 (28%), Positives = 72/136 (52%)
Query: 299 HSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAA 358
H +AER RR+K+ ER+ L L+P KTDKA++L++ I ++K LQ +VK L R+
Sbjct: 133 HVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVVTK 192
Query: 359 GAVLPLITDGQAEA---SKGLSLSPQADQGVDISLNSDQIAFEEEVVKLMESNVTKAMQY 415
+I +++ S S +S +SD+++ ++ + ++E+ V+
Sbjct: 193 KMDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRDLL 252
Query: 416 LQ-----NKGLCLMPI 426
++ NKG C++ I
Sbjct: 253 IRVHCEKNKG-CMIKI 267
>TAIR|locus:2199216 [details] [associations]
symbol:AT1G27660 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:BX814188 IPI:IPI00523952 PIR:F86401 RefSeq:NP_174087.1
UniGene:At.49924 ProteinModelPortal:Q9SFZ3 SMR:Q9SFZ3 PaxDb:Q9SFZ3
PRIDE:Q9SFZ3 EnsemblPlants:AT1G27660.1 GeneID:839658
KEGG:ath:AT1G27660 TAIR:At1g27660 eggNOG:NOG274631
HOGENOM:HOG000095222 InParanoid:Q9SFZ3 OMA:MKSSRNK PhylomeDB:Q9SFZ3
ProtClustDB:CLSN2679312 Genevestigator:Q9SFZ3 Uniprot:Q9SFZ3
Length = 453
Score = 131 (51.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 49/148 (33%), Positives = 71/148 (47%)
Query: 245 PNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAER 304
P H + FS+ P T L T + G N + K RV +R + P +
Sbjct: 285 PTHQMEMFSNEP-QTSEGKRHNFLMATKA-----GENASKKPRVESR--SSCPPFKV--- 333
Query: 305 LRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSM-------SRLGA 357
R+EK+ +R+ LQ+LV KTD AS+L E I Y+KFLQ Q++ LS+ +R G
Sbjct: 334 -RKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPGK 392
Query: 358 AGAVLPLITDGQAEA-----SKGLSLSP 380
A ++ +G E S+GL L P
Sbjct: 393 ASQLVSQSQEGDEEETRDLRSRGLCLVP 420
Score = 47 (21.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 416 LQNKGLCLMPIALATAIS 433
L+++GLCL+P++ T ++
Sbjct: 411 LRSRGLCLVPLSCMTYVT 428
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 58/219 (26%), Positives = 96/219 (43%)
Query: 227 LQFDYLSASIVAKGEQELPNHPLSCFSSR----PLPTVPTVGLPSLQ-QTASANPTGGCN 281
+ +++ SA +Q P++P + +R + +P PS QT A+ G N
Sbjct: 119 VSWNFSSAMTQPCNDQATPSNPPTTTRARYGGGGVRYLPAAVSPSPSAQTRRASSKG--N 176
Query: 282 GTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVK 341
G G + + A + H IAER RREKI +R L ++P K DKA++L + + YVK
Sbjct: 177 GGGGSGSSSAAPYAQE-HIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVK 235
Query: 342 FLQLQVKVLSMSRLGAA-GAVL---PLITDGQAEASKGLSLSPQADQGVDISLNSDQIAF 397
+Q ++ L + G A+L P I ++ G + A G S + + +
Sbjct: 236 EMQEKLSELEQHQNGGVESAILLKKPCIATSSSDG--GCPAASSAVAGSSSS-GTARSSL 292
Query: 398 EEEVVKLMESNVTKAMQYLQN-KGLCLMPIALATAISSG 435
E K+ NV + N KG + +A + G
Sbjct: 293 PEIEAKISHGNVMVRIHGENNGKGSLVRLLAAVEGLHLG 331
>UNIPROTKB|Q6ESL3 [details] [associations]
symbol:OJ1294_G06.8 "DNA binding protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005093 ProteinModelPortal:Q6ESL3
EnsemblPlants:LOC_Os09g24490.1 KEGG:dosa:Os09t0410700-00
Gramene:Q6ESL3 OMA:RRHECIA Uniprot:Q6ESL3
Length = 363
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 283 TGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
T + + A+ A+ HS AER RR++I + L+ L+PN+ KTDKAS+L E+I++VK
Sbjct: 94 TAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKE 153
Query: 343 LQLQVKVLSMSRLGAAG 359
L+ Q ++ + AAG
Sbjct: 154 LKRQTTAIAAA--AAAG 168
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 282 GTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVK 341
GT +A+ R H +AER RREK+ +R L L+P K DKAS+L + I ++K
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIK 169
Query: 342 FLQLQVK 348
+LQ VK
Sbjct: 170 YLQESVK 176
>UNIPROTKB|Q6Z339 [details] [associations]
symbol:B1121A12.20 "Os02g0726700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
EMBL:AP008208 EMBL:AP005284 RefSeq:NP_001047993.1 UniGene:Os.52592
GeneID:4330593 KEGG:osa:4330593 ProtClustDB:CLSN2919237
Uniprot:Q6Z339
Length = 344
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 269 QQTASANPTGGCNGTGKARVR-ARRGQAT--DPHSIAERLRREKIAERMKNLQELVPNSN 325
Q++ P G++ A +G +T HS E+ RR KI +R++ L+EL+P+++
Sbjct: 117 QRSIGQTPYEATRAEGRSSASSADQGPSTPRSKHSATEQRRRTKINDRLEILRELLPHTD 176
Query: 326 -KTDKASMLDEIIDYVKFLQLQVK 348
K DKAS L E+I+Y++FLQ +V+
Sbjct: 177 QKRDKASFLSEVIEYIRFLQEKVQ 200
>UNIPROTKB|Q60EJ4 [details] [associations]
symbol:OSJNBa0017K09.4 "Os05g0501200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000142
HOGENOM:HOG000241059 EMBL:AC130597 RefSeq:NP_001055968.1
UniGene:Os.80283 EnsemblPlants:LOC_Os05g42180.1 GeneID:4339235
KEGG:osa:4339235 eggNOG:NOG235707 ProtClustDB:CLSN2695716
Uniprot:Q60EJ4
Length = 323
Score = 120 (47.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 269 QQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD 328
Q S +P + A + R +A P ++R+EK+ +R+ LQ+LV KTD
Sbjct: 176 QDAGSPSPATRSSPGSPAAAKKPRIEAPSPMPTF-KVRKEKLGDRITALQQLVSPFGKTD 234
Query: 329 KASMLDEIIDYVKFLQLQVKVLS 351
AS+L E I+Y+KFL QV LS
Sbjct: 235 TASVLHEAIEYIKFLHDQVASLS 257
Score = 52 (23.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 416 LQNKGLCLMPIALATAISSGKAS 438
L+++GLCL+P+A ++S A+
Sbjct: 289 LRSRGLCLVPVASTYTVASETAT 311
>UNIPROTKB|Q69JI7 [details] [associations]
symbol:OSJNBa0026C08.39-1 "BHLH protein family-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008215 EMBL:CM000146 EMBL:EU837261 EMBL:AP006169
EMBL:AP005759 RefSeq:NP_001063459.1 UniGene:Os.16741
EnsemblPlants:LOC_Os09g29930.1 GeneID:4347359 KEGG:osa:4347359
OMA:HNIVTSA ProtClustDB:CLSN2697427 Uniprot:Q69JI7
Length = 504
Score = 136 (52.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 267 SLQQ-TASANPTGG-CNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNS 324
SL++ T + GG C+G+G + R HS E+ RR KI +R + L+EL+P+S
Sbjct: 191 SLKELTVRVDGKGGSCSGSGTDQ---RPSSPRSKHSATEQRRRSKINDRFQILRELLPHS 247
Query: 325 N-KTDKASMLDEIIDYVKFLQLQVKVLSMS 353
+ K DKA+ L E+I+Y++FLQ +V+ S
Sbjct: 248 DQKRDKATFLLEVIEYIRFLQEKVQKFEAS 277
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 390 LNSDQIAFEEEVVKLMESNVTKAM----QYLQNKGLCLMPIALATAISSGK 436
LN+ Q+A +E + L + + L++ G+ L +++ I+ GK
Sbjct: 401 LNNQQLAIDEGTISLSSQYSQQLLGTLTHALESSGVDLSQSSISVQINLGK 451
>UNIPROTKB|Q6ZBQ2 [details] [associations]
symbol:P0605H02.26 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 ProtClustDB:CLSN2697427 EMBL:HQ858865 EMBL:AP004620
EMBL:AK100183 RefSeq:NP_001062109.1 UniGene:Os.5093 STRING:Q6ZBQ2
EnsemblPlants:LOC_Os08g38210.1 GeneID:4345899 KEGG:osa:4345899
OMA:KPTHDFL Uniprot:Q6ZBQ2
Length = 508
Score = 126 (49.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 278 GGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVP-NSNKTDKASMLDEI 336
G C+G+ A HS E+ RR KI +R + L++L+P N K DKAS L E+
Sbjct: 207 GSCSGS--AGTDQMPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEV 264
Query: 337 IDYVKFLQLQVKVLSMS 353
I+Y++FLQ +V+ +S
Sbjct: 265 IEYIRFLQEKVQKYEVS 281
Score = 51 (23.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 379 SPQADQGVDIS-LNSDQIAFEEEVVKLM----ESNVTKAMQYLQNKGLCLMPIALATAIS 433
SP + V+ LN+ +A +E + L + + K L+N G+ L +++ I+
Sbjct: 394 SPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQIN 453
Query: 434 SGK 436
GK
Sbjct: 454 LGK 456
>UNIPROTKB|Q657Z3 [details] [associations]
symbol:P0005A05.10 "Putative ethylene-responsive protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000138 EMBL:AP002863
UniGene:Os.45859 KEGG:dosa:Os01t0105700-01 Uniprot:Q657Z3
Length = 387
Score = 128 (50.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 67/286 (23%), Positives = 129/286 (45%)
Query: 121 PTLGSMNLGSPKQLPLIG-EMTTSPSFVDSEHVGGNSSELSDIQRSLRDLQTISPSPELW 179
P L + L + + +G + ++ + D + +++ S++ + +L+ P P+
Sbjct: 79 PHLQAHQLSTVLMMQELGFQWSSCAAPADQHSIASSTNNNSNVMMNEEELR---PRPDQS 135
Query: 180 LPTSYEEVSSLSSVIEQPRTRGFYLQGATM-NHDVDTTGNRYVGMDKILQF--DYLSASI 236
L ++ S+ ++++ P +L GA + + +V G D+ LQ +A+
Sbjct: 136 LISNPRSCSA-TTLLPPPH---LHLDGAVLPSINVSRLQKLAAG-DEPLQICCKRQAAAA 190
Query: 237 VAKGEQELPNHPLSC-FSSRPLPTV--PTVGLPSLQQT-ASANPTGGCNGTGK------A 286
G + + + C ++ P + P+ L + T A+A GG +G+ A
Sbjct: 191 AVVGHSSIRDEHVPCPYAGPPAHLIQGPSNTLQMKRNTNAAAQGRGGRHGSSTEHRSSTA 250
Query: 287 RVRARRGQATDPHSIAE----RLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKF 342
+ + + HS + ++R+EK+ +R+ LQ+LV KTD AS+L E I Y+KF
Sbjct: 251 LPPSSKKPRLESHSSSMLPSFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKF 310
Query: 343 LQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQADQGVDI 388
LQ QV+ LS L ++ L + KG S A +D+
Sbjct: 311 LQDQVETLSGPYLRSSKNSKKLACRAAQQQRKGTSNGGDAAAKLDL 356
Score = 45 (20.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 6/19 (31%), Positives = 16/19 (84%)
Query: 416 LQNKGLCLMPIALATAISS 434
L+++GLCL+P++ + +++
Sbjct: 356 LRSRGLCLVPLSCTSYVTN 374
>TAIR|locus:2061609 [details] [associations]
symbol:AT2G20100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC006081
HOGENOM:HOG000005841 EMBL:AJ577588 EMBL:AK221525 IPI:IPI00530302
IPI:IPI00570541 PIR:H84584 RefSeq:NP_001077923.1 RefSeq:NP_179600.2
UniGene:At.48494 ProteinModelPortal:Q7XHI5 SMR:Q7XHI5
EnsemblPlants:AT2G20100.1 GeneID:816529 KEGG:ath:AT2G20100
TAIR:At2g20100 eggNOG:NOG295752 InParanoid:Q7XHI5 OMA:GSSFANK
PhylomeDB:Q7XHI5 ProtClustDB:CLSN2681156 Genevestigator:Q7XHI5
Uniprot:Q7XHI5
Length = 362
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 264 GLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPN 323
GL +L + S+ G K +++ Q+T ++R+EK+ R+ +L +LV
Sbjct: 186 GL-NLSECNSSEMIGSSFANKKPKLQVPSSQST------LKVRKEKLGGRIASLHQLVSP 238
Query: 324 SNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKGLSLSPQAD 383
KTD AS+L E I Y++FL Q++ LS+ G + Q + + P+ D
Sbjct: 239 FGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGTPSRNNMMHQHAQRNMN---GIFPE-D 294
Query: 384 QGVDISLNSDQIAFEEEVVKLMESNVTKA-MQYLQNKGLCLMPIALATAISS 434
G ++ + +SN + M+ L+++GLCL+PI+ + S
Sbjct: 295 PGQLVNEYCMKRGVSLSSTDNQKSNPNEEPMKDLRSRGLCLVPISCTLQVGS 346
>TAIR|locus:2031978 [details] [associations]
symbol:AT1G05710 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009723 "response to
ethylene stimulus" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GO:GO:0003700 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240890 ProtClustDB:CLSN2687695 EMBL:AY072363
EMBL:BT006558 IPI:IPI00544028 RefSeq:NP_849597.1 UniGene:At.42378
UniGene:At.72027 ProteinModelPortal:Q8VY82 IntAct:Q8VY82
PRIDE:Q8VY82 EnsemblPlants:AT1G05710.2 GeneID:837078
KEGG:ath:AT1G05710 TAIR:At1g05710 InParanoid:Q8VY82 OMA:MENTVGV
PhylomeDB:Q8VY82 ArrayExpress:Q8VY82 Genevestigator:Q8VY82
Uniprot:Q8VY82
Length = 171
Score = 106 (42.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS 351
S + + R++K+ ER+ LQ++V KTD AS+L + + Y++FL QVKV S
Sbjct: 33 SFSSKERKDKVGERISALQQIVSPYGKTDTASVLLDAMHYIEFLHEQVKVCS 84
Score = 50 (22.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 414 QY-LQNKGLCLMPI--ALATAISSG 435
QY L+N+GLCL+P+ + A S+G
Sbjct: 123 QYSLRNRGLCLVPMENTVGVAQSNG 147
>RGD|3092 [details] [associations]
symbol:Mitf "microphthalmia-associated transcription factor"
species:10116 "Rattus norvegicus" [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding transcription
factor activity involved in positive regulation of transcription"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISO] [GO:0006461 "protein complex
assembly" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA;ISO] [GO:0030154 "cell differentiation" evidence=ISO]
[GO:0030316 "osteoclast differentiation" evidence=IEA;ISO]
[GO:0030318 "melanocyte differentiation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO]
[GO:0042981 "regulation of apoptotic process" evidence=ISO]
[GO:0043010 "camera-type eye development" evidence=IEA;ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA;ISO] [GO:0043234 "protein complex" evidence=IEA;ISO]
[GO:0043473 "pigmentation" evidence=ISO] [GO:0045165 "cell fate
commitment" evidence=IEA;ISO] [GO:0045670 "regulation of osteoclast
differentiation" evidence=IEA;ISO] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046849 "bone remodeling" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 RGD:3092 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234
GO:GO:0006461 GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010 GO:GO:0045670
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014 GO:GO:0030318
GO:GO:0045165 GO:GO:0030316 eggNOG:NOG251286 HOGENOM:HOG000231368
OrthoDB:EOG495ZRR EMBL:AF029886 IPI:IPI00563001 UniGene:Rn.31427
ProteinModelPortal:O88368 STRING:O88368 UCSC:RGD:3092
InParanoid:O88368 ArrayExpress:O88368 Genevestigator:O88368
GermOnline:ENSRNOG00000008658 Uniprot:O88368
Length = 110
Score = 107 (42.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYV 340
+AR A+ Q D H++ ER RR I +R+K L L+P SN D K ++L +DY+
Sbjct: 11 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI 70
Query: 341 KFLQ 344
+ LQ
Sbjct: 71 RKLQ 74
>UNIPROTKB|O88368 [details] [associations]
symbol:Mitf "Microphthalmia-associated transcription
factor" species:10116 "Rattus norvegicus" [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
RGD:3092 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234 GO:GO:0006461
GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010
GO:GO:0045670 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
GO:GO:0030318 GO:GO:0045165 GO:GO:0030316 eggNOG:NOG251286
HOGENOM:HOG000231368 OrthoDB:EOG495ZRR EMBL:AF029886
IPI:IPI00563001 UniGene:Rn.31427 ProteinModelPortal:O88368
STRING:O88368 UCSC:RGD:3092 InParanoid:O88368 ArrayExpress:O88368
Genevestigator:O88368 GermOnline:ENSRNOG00000008658 Uniprot:O88368
Length = 110
Score = 107 (42.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 285 KARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYV 340
+AR A+ Q D H++ ER RR I +R+K L L+P SN D K ++L +DY+
Sbjct: 11 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI 70
Query: 341 KFLQ 344
+ LQ
Sbjct: 71 RKLQ 74
>TAIR|locus:2083460 [details] [associations]
symbol:AT3G20640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000241059 EMBL:AP002034 EMBL:AK118054 EMBL:BT008580
IPI:IPI00530194 RefSeq:NP_188700.1 UniGene:At.38202
ProteinModelPortal:Q8GXT3 SMR:Q8GXT3 EnsemblPlants:AT3G20640.1
GeneID:821611 KEGG:ath:AT3G20640 TAIR:At3g20640 eggNOG:NOG253493
InParanoid:Q8GXT3 OMA:YDQMASA PhylomeDB:Q8GXT3
ProtClustDB:CLSN2915619 Genevestigator:Q8GXT3 Uniprot:Q8GXT3
Length = 454
Score = 129 (50.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 47/137 (34%), Positives = 70/137 (51%)
Query: 247 HPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPHSIAERLR 306
HP S F +P + ++ ++S G N A RA+ +A P S A + R
Sbjct: 297 HPQS-FDEQPK------NISEIRDSSSNEVKRGGNDHQPAAKRAK-SEAASP-SPAFK-R 346
Query: 307 REKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLIT 366
+EK+ +R+ LQ+LV KTD AS+L E I+Y+KFL QV LS + +GA L
Sbjct: 347 KEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYM-KSGASLQ--- 402
Query: 367 DGQAEASKGLSLSPQAD 383
Q++ S L +S + D
Sbjct: 403 HQQSDHSTELEVSEEPD 419
Score = 43 (20.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 6/12 (50%), Positives = 12/12 (100%)
Query: 416 LQNKGLCLMPIA 427
L+++GLCL+P++
Sbjct: 420 LRSRGLCLVPVS 431
>TAIR|locus:2026629 [details] [associations]
symbol:EGL3 "AT1G63650" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009957 "epidermal
cell fate specification" evidence=RCA;IMP] [GO:0001708 "cell fate
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009913 "epidermal cell
differentiation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251687 EMBL:AF013465
EMBL:AF027732 EMBL:AC011622 IPI:IPI00545374 PIR:D96661
RefSeq:NP_001185302.1 RefSeq:NP_176552.1 RefSeq:NP_974080.1
UniGene:At.25024 ProteinModelPortal:Q9CAD0 SMR:Q9CAD0 IntAct:Q9CAD0
STRING:Q9CAD0 PRIDE:Q9CAD0 EnsemblPlants:AT1G63650.1
EnsemblPlants:AT1G63650.2 EnsemblPlants:AT1G63650.3 GeneID:842669
KEGG:ath:AT1G63650 GeneFarm:1894 TAIR:At1g63650 eggNOG:NOG320411
HOGENOM:HOG000237985 InParanoid:Q9CAD0 OMA:ERASANC PhylomeDB:Q9CAD0
ProtClustDB:CLSN2682588 Genevestigator:Q9CAD0 GermOnline:AT1G63650
GO:GO:0009957 Uniprot:Q9CAD0
Length = 596
Score = 128 (50.1 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 294 QATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMS 353
+ T H+++E+ RREK+ ER L+ ++P+ +K DK S+LD+ I+Y++ LQ +V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELESC 460
Query: 354 RLGA 357
R A
Sbjct: 461 RESA 464
>TAIR|locus:2152262 [details] [associations]
symbol:BIM3 "AT5G38860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000070523 EMBL:AB009048 EMBL:AJ630499 EMBL:AY568671
EMBL:BT033131 IPI:IPI00534511 RefSeq:NP_198702.2 UniGene:At.50495
ProteinModelPortal:Q9FMB6 SMR:Q9FMB6 IntAct:Q9FMB6 PRIDE:Q9FMB6
EnsemblPlants:AT5G38860.1 GeneID:833877 KEGG:ath:AT5G38860
TAIR:At5g38860 eggNOG:NOG267159 InParanoid:Q9FMB6 OMA:TETRSFC
PhylomeDB:Q9FMB6 ProtClustDB:CLSN2918639 Genevestigator:Q9FMB6
Uniprot:Q9FMB6
Length = 298
Score = 123 (48.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 289 RARRGQATDPHSIAERLRREKIAERMKNLQELVP---NSNKTDKASMLDEIIDYVKFLQL 345
R R HS E+ RR KI ER ++L +++P N K DKAS L E+I+Y+ FLQ
Sbjct: 28 RRNRNSCRSKHSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQE 87
Query: 346 QV 347
+V
Sbjct: 88 KV 89
>UNIPROTKB|Q8LSP3 [details] [associations]
symbol:OJ1203D03.3 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC099732
EnsemblPlants:LOC_Os03g12760.1 KEGG:dosa:Os03t0229100-00
HOGENOM:HOG000239880 OMA:DSCLNIT Uniprot:Q8LSP3
Length = 451
Score = 126 (49.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 289 RARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVK 348
R+R H IAER RREK+ ++ L +VP KTDK S+L IDYVK L+ +VK
Sbjct: 278 RSRPPANAQEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQLEEKVK 337
Query: 349 VL 350
L
Sbjct: 338 AL 339
>TAIR|locus:504954829 [details] [associations]
symbol:GL3 "AT5G41315" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0010091 "trichome branching" evidence=IMP]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009957 "epidermal cell fate
specification" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215
GO:GO:0010091 HSSP:P61244 EMBL:AB006707 eggNOG:NOG320411
HOGENOM:HOG000237985 ProtClustDB:CLSN2682588 GO:GO:0009957
EMBL:AF246291 IPI:IPI00543830 RefSeq:NP_680372.1 UniGene:At.27204
ProteinModelPortal:Q9FN69 SMR:Q9FN69 IntAct:Q9FN69 STRING:Q9FN69
EnsemblPlants:AT5G41315.1 GeneID:834133 KEGG:ath:AT5G41315
TAIR:At5g41315 InParanoid:Q9FN69 OMA:ERTSANC PhylomeDB:Q9FN69
Genevestigator:Q9FN69 Uniprot:Q9FN69
Length = 637
Score = 128 (50.1 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 24/59 (40%), Positives = 41/59 (69%)
Query: 296 TDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
T H++ E+ RREK+ ER L++++P+ NK DK S+LD+ I+Y++ L+ +V+ L R
Sbjct: 439 TGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQELESCR 497
>TAIR|locus:2085964 [details] [associations]
symbol:BHLH32 "AT3G25710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] [GO:0080147 "root hair cell development"
evidence=IMP] [GO:0048364 "root development" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028607
GO:GO:0003677 GO:GO:0009718 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0016036
HOGENOM:HOG000243133 ProtClustDB:CLSN2689090 EMBL:DQ205679
EMBL:AY058840 EMBL:AY079033 EMBL:AY086383 EMBL:AF488571
IPI:IPI00523379 RefSeq:NP_189199.1 UniGene:At.22148
ProteinModelPortal:Q9LS08 SMR:Q9LS08 IntAct:Q9LS08 STRING:Q9LS08
PRIDE:Q9LS08 EnsemblPlants:AT3G25710.1 GeneID:822159
KEGG:ath:AT3G25710 TAIR:At3g25710 eggNOG:NOG304577 OMA:RERINTH
PhylomeDB:Q9LS08 Genevestigator:Q9LS08 GO:GO:0080147 Uniprot:Q9LS08
Length = 344
Score = 124 (48.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 295 ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS 351
A+ HS AER RRE+I + L+ ++PN+ KTDKAS+L E+I ++K L+ Q ++
Sbjct: 132 ASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQIT 188
>UNIPROTKB|P19484 [details] [associations]
symbol:TFEB "Transcription factor EB" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0001892 "embryonic
placenta development" evidence=ISS] [GO:0006959 "humoral immune
response" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0007040 "lysosome organization" evidence=IMP] [GO:0010508
"positive regulation of autophagy" evidence=IMP] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 InterPro:IPR024098
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0005667 GO:GO:0044212 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0006959 PANTHER:PTHR10014 GO:GO:0001892
EMBL:AL035588 eggNOG:NOG251286 HOGENOM:HOG000231368
HOVERGEN:HBG006768 EMBL:M33782 EMBL:AJ608786 EMBL:BC006225
EMBL:BC032448 IPI:IPI00385436 IPI:IPI00465427 PIR:A35658
RefSeq:NP_001161299.2 RefSeq:NP_001258872.1 RefSeq:NP_001258873.1
RefSeq:NP_001258874.1 RefSeq:NP_009093.1 UniGene:Hs.485360
ProteinModelPortal:P19484 SMR:P19484 IntAct:P19484 STRING:P19484
PhosphoSite:P19484 DMDM:19856774 PRIDE:P19484 DNASU:7942
Ensembl:ENST00000230323 Ensembl:ENST00000373033
Ensembl:ENST00000403298 Ensembl:ENST00000420312 GeneID:7942
KEGG:hsa:7942 UCSC:uc003oqr.1 UCSC:uc003oqs.1 CTD:7942
GeneCards:GC06M041651 HGNC:HGNC:11753 MIM:600744 neXtProt:NX_P19484
PharmGKB:PA36468 InParanoid:P19484 KO:K15590 OrthoDB:EOG469QTV
PhylomeDB:P19484 ChiTaRS:TFEB GenomeRNAi:7942 NextBio:30462
ArrayExpress:P19484 Bgee:P19484 CleanEx:HS_TFEB
Genevestigator:P19484 GermOnline:ENSG00000112561
PANTHER:PTHR10014:SF9 Uniprot:P19484
Length = 476
Score = 126 (49.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 206 GATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGL 265
G+ ++D + + +D +L Y++ + L + L+ +SS P T VG+
Sbjct: 150 GSNPERELDDVIDNIMRLDDVL--GYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGV 207
Query: 266 PSLQQTASANPTGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNS 324
S + A+ T T ++R A+ Q D H++ ER RR I +R+K L L+P +
Sbjct: 208 TS--SSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKA 265
Query: 325 NKTD----KASMLDEIIDYVKFLQLQVKVLSMSR 354
N D K ++L +DY++ +Q K L SR
Sbjct: 266 NDLDVRWNKGTILKASVDYIRRMQ---KDLQKSR 296
>UNIPROTKB|B0QYS6 [details] [associations]
symbol:TFEB "Transcription factor EB" species:9606 "Homo
sapiens" [GO:0001892 "embryonic placenta development" evidence=IEA]
[GO:0006959 "humoral immune response" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
InterPro:IPR024098 Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888
SMART:SM00353 GO:GO:0045893 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0006959 PANTHER:PTHR10014 GO:GO:0001892 EMBL:AL365205
EMBL:AL035588 HOGENOM:HOG000231368 HOVERGEN:HBG006768
RefSeq:NP_001161299.2 UniGene:Hs.485360 GeneID:7942 HGNC:HGNC:11753
ChiTaRS:TFEB PANTHER:PTHR10014:SF9 IPI:IPI00893531
ProteinModelPortal:B0QYS6 SMR:B0QYS6 STRING:B0QYS6
Ensembl:ENST00000358871 ArrayExpress:B0QYS6 Bgee:B0QYS6
Uniprot:B0QYS6
Length = 490
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 206 GATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGL 265
G+ ++D + + +D +L Y++ + L + L+ +SS P T VG+
Sbjct: 164 GSNPERELDDVIDNIMRLDDVL--GYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGV 221
Query: 266 PSLQQTASANPTGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNS 324
S + A+ T T ++R A+ Q D H++ ER RR I +R+K L L+P +
Sbjct: 222 TS--SSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKA 279
Query: 325 NKTD----KASMLDEIIDYVKFLQLQVKVLSMSR 354
N D K ++L +DY++ +Q K L SR
Sbjct: 280 NDLDVRWNKGTILKASVDYIRRMQ---KDLQKSR 310
>TAIR|locus:2199307 [details] [associations]
symbol:AT1G68240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009686 "gibberellin biosynthetic process" evidence=RCA]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0016114 "terpenoid biosynthetic process"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC016447
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AJ577585 EMBL:AY735551
EMBL:AY735552 EMBL:AY924719 IPI:IPI00528459 IPI:IPI00657054
IPI:IPI00919318 PIR:H96705 RefSeq:NP_001031251.1 RefSeq:NP_176991.2
UniGene:At.35550 ProteinModelPortal:Q5XVH0 SMR:Q5XVH0
EnsemblPlants:AT1G68240.1 GeneID:843153 KEGG:ath:AT1G68240
TAIR:At1g68240 eggNOG:NOG270610 HOGENOM:HOG000095221 OMA:EGTHEEE
PhylomeDB:Q5XVH0 ProtClustDB:CLSN2681409 Genevestigator:Q5XVH0
Uniprot:Q5XVH0
Length = 185
Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 290 ARRGQATDPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVK 348
A+R ++ + + E+ RR++I +++ LQ L+PN K D AS L+ II+Y+K L+ QV
Sbjct: 63 AKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVD 122
Query: 349 VLSMS 353
V+SM+
Sbjct: 123 VMSMA 127
>UNIPROTKB|B0QYS7 [details] [associations]
symbol:TFEB "Transcription factor EB" species:9606 "Homo
sapiens" [GO:0001892 "embryonic placenta development" evidence=IEA]
[GO:0006959 "humoral immune response" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
InterPro:IPR024098 Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888
SMART:SM00353 GO:GO:0045893 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0006959 PANTHER:PTHR10014 GO:GO:0001892 EMBL:AL365205
EMBL:AL035588 HOGENOM:HOG000231368 HOVERGEN:HBG006768
UniGene:Hs.485360 HGNC:HGNC:11753 ChiTaRS:TFEB
PANTHER:PTHR10014:SF9 IPI:IPI00853484 ProteinModelPortal:B0QYS7
SMR:B0QYS7 STRING:B0QYS7 PRIDE:B0QYS7 Ensembl:ENST00000343317
UCSC:uc021yzl.1 OMA:HGSPFPS ArrayExpress:B0QYS7 Bgee:B0QYS7
Uniprot:B0QYS7
Length = 562
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 206 GATMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGL 265
G+ ++D + + +D +L Y++ + L + L+ +SS P T VG+
Sbjct: 236 GSNPERELDDVIDNIMRLDDVL--GYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGV 293
Query: 266 PSLQQTASANPTGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNS 324
S + A+ T T ++R A+ Q D H++ ER RR I +R+K L L+P +
Sbjct: 294 TS--SSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKA 351
Query: 325 NKTD----KASMLDEIIDYVKFLQLQVKVLSMSR 354
N D K ++L +DY++ +Q K L SR
Sbjct: 352 NDLDVRWNKGTILKASVDYIRRMQ---KDLQKSR 382
>UNIPROTKB|B1AKB5 [details] [associations]
symbol:TFEB "Transcription factor EB" species:9606 "Homo
sapiens" [GO:0001892 "embryonic placenta development" evidence=IEA]
[GO:0006959 "humoral immune response" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
InterPro:IPR024098 Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888
SMART:SM00353 GO:GO:0045893 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0006959 PANTHER:PTHR10014 GO:GO:0001892 EMBL:AL365205
EMBL:AL035588 HOGENOM:HOG000231368 HOVERGEN:HBG006768
IPI:IPI00385436 UniGene:Hs.485360 HGNC:HGNC:11753 ChiTaRS:TFEB
PANTHER:PTHR10014:SF9 ProteinModelPortal:B1AKB5 SMR:B1AKB5
STRING:B1AKB5 Ensembl:ENST00000406563 ArrayExpress:B1AKB5
Bgee:B1AKB5 Uniprot:B1AKB5
Length = 334
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 46/143 (32%), Positives = 71/143 (49%)
Query: 223 MDKILQFDYLSASIVAKGEQELPNH-PLSC-----FSSRPLPTVPTVGLPSLQQTASANP 276
+D I++ D + I E ++PN PLS +SS P T VG+ S + A+
Sbjct: 19 IDNIMRLDDVLGYI--NPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTS--SSCPADL 74
Query: 277 TGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KAS 331
T T ++R A+ Q D H++ ER RR I +R+K L L+P +N D K +
Sbjct: 75 TQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGT 134
Query: 332 MLDEIIDYVKFLQLQVKVLSMSR 354
+L +DY++ +Q K L SR
Sbjct: 135 ILKASVDYIRRMQ---KDLQKSR 154
>UNIPROTKB|Q84R79 [details] [associations]
symbol:OSJNBb0113I20.1 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R79 Gramene:Q84R79
Uniprot:Q84R79
Length = 301
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 299 HSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAA 358
H +AER RREKI +R L ++P K DKA++L + Y++ LQ ++K L + A
Sbjct: 131 HVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDAASYIRELQEKLKALE-EQAAAR 189
Query: 359 GAVLPLITDGQAEASKGLSLSPQAD 383
+ T A A L + P+ +
Sbjct: 190 VTEAAMATPSPARAMNHLPVPPEIE 214
>UNIPROTKB|F1NSP5 [details] [associations]
symbol:TFEB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001892 "embryonic placenta development" evidence=IEA]
[GO:0006959 "humoral immune response" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 InterPro:IPR024098
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0006959 PANTHER:PTHR10014
GO:GO:0001892 GeneTree:ENSGT00390000004402 PANTHER:PTHR10014:SF9
OMA:HGSPFPS EMBL:AADN02066923 EMBL:AADN02066924 EMBL:AADN02066925
EMBL:AADN02066926 EMBL:AADN02066927 IPI:IPI00592375
Ensembl:ENSGALT00000005385 Uniprot:F1NSP5
Length = 454
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 70/302 (23%), Positives = 124/302 (41%)
Query: 74 SEYGIDKNLLSEETQYEKDGQNCNGNLSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSPKQ 133
S G+ L+ ++ Q E + + L MN ++ + + PAI T ++ SP
Sbjct: 2 SRIGLRMELMKQQAQQEAERERAQQQLM-MNY-MQQQRMPVASSPAINT--PIHYQSPPP 57
Query: 134 LPLIGEMTTSPSFVDSE---HVGGNSSELSDIQRSLRDLQ-----------TISPSPELW 179
+P GE+ S++++ H+ S +Q L + + SP P
Sbjct: 58 VP--GEVLKVQSYLENPTTYHL--QKSRDKKVQAYLSETYGNKFAAHVSPASHSPKPPPA 113
Query: 180 LPTSYE--EVSSLSSVIEQPRTRGFYLQ-GATMNHDVDTTGNRYVGMDKILQFDYLSASI 236
+ S V S S+ P + L G+ + D + + +D +L Y++ +
Sbjct: 114 VSPSVRPGHVMSSSAGNSAPNSPMAMLNIGSNPEREFDEVIDDIMRLDDVL--GYMNPEV 171
Query: 237 VAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQAT 296
+ + ++ +S P T VG+ S A ++R A+ Q
Sbjct: 172 HMPNTLPMSSSHMNVYSGDPQVTASLVGVTSSSCPAELTQKRELTDA-ESRALAKERQKK 230
Query: 297 DPHSIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQVKVLSM 352
D H++ ER RR I +R+K L L+P +N D K ++L +DY+K +Q K L
Sbjct: 231 DNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIKRMQ---KDLQR 287
Query: 353 SR 354
SR
Sbjct: 288 SR 289
>UNIPROTKB|Q6Z1F9 [details] [associations]
symbol:OSJNBa0033D24.39 "BHLH transcription factor-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 GO:GO:0005634
EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005439
EMBL:AP004464 RefSeq:NP_001062365.1 UniGene:Os.89290 GeneID:4346166
KEGG:osa:4346166 Uniprot:Q6Z1F9
Length = 143
Score = 103 (41.3 bits), Expect = 0.00029, P = 0.00029
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 314 MKNLQELVPNSNK-TDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAGAVL 362
M+ LQ LVP +K T KA +LDEII+YV+ LQ QV+ LSM R+ + VL
Sbjct: 1 MRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSM-RIASMSPVL 49
>UNIPROTKB|Q948Y2 [details] [associations]
symbol:Plw-OSB2 "R-type basic helix-loop-helix protein"
species:4530 "Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 HOGENOM:HOG000237985 EMBL:AB021080
ProteinModelPortal:Q948Y2 Gramene:Q948Y2 Genevestigator:Q948Y2
Uniprot:Q948Y2
Length = 451
Score = 121 (47.7 bits), Expect = 0.00032, P = 0.00032
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 284 GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFL 343
G + G H ++ER RREK+ E L+ L+P+ K DKAS+L E I Y+K L
Sbjct: 364 GSVAITTTPGSNIKSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVL 423
Query: 344 QLQVKVLSMS 353
+ +VK L S
Sbjct: 424 EKRVKELESS 433
>TAIR|locus:2155725 [details] [associations]
symbol:bHLH093 "AT5G65640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0007275
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB026639 HOGENOM:HOG000029066 EMBL:AF488621 EMBL:BT025665
EMBL:AK229018 EMBL:AY085134 IPI:IPI00533579 IPI:IPI00785991
RefSeq:NP_001078801.1 RefSeq:NP_569014.1 UniGene:At.28897
ProteinModelPortal:Q9LSL1 SMR:Q9LSL1 EnsemblPlants:AT5G65640.1
GeneID:836690 KEGG:ath:AT5G65640 TAIR:At5g65640 eggNOG:NOG245311
InParanoid:Q9LSL1 OMA:PLMESDQ PhylomeDB:Q9LSL1
ProtClustDB:CLSN2686406 Genevestigator:Q9LSL1 Uniprot:Q9LSL1
Length = 351
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 35/109 (32%), Positives = 61/109 (55%)
Query: 236 IVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNG-TGKARVRARRGQ 294
I+ G++E N+P+S P P + + Q+ S + G C G T K + + GQ
Sbjct: 127 ILQNGQEENFNNPMSY----PSPLMES------DQSKSFS-VGYCGGETNKKKSKKLEGQ 175
Query: 295 ATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFL 343
+ + +AER RR+++ +R+ L+ +VP +K D+ S+L + IDY+K L
Sbjct: 176 PSK-NLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKEL 223
>UNIPROTKB|F1RUY2 [details] [associations]
symbol:TFEB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0006959
"humoral immune response" evidence=IEA] [GO:0001892 "embryonic
placenta development" evidence=IEA] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 InterPro:IPR024098
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0006959 PANTHER:PTHR10014
GO:GO:0001892 GeneTree:ENSGT00390000004402 PANTHER:PTHR10014:SF9
OMA:HGSPFPS EMBL:CT737369 Ensembl:ENSSSCT00000001802 Uniprot:F1RUY2
Length = 479
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 78/305 (25%), Positives = 132/305 (43%)
Query: 74 SEYGIDKNLLSEETQYEKDGQNCNGN--LSSMNRSLKLGNVGLQYDPAIPTLGSMNLGSP 131
S G+ L+ E+ Q E+ + + M + + +G PAI T ++ SP
Sbjct: 6 SRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQLGGPPTPAINT--PVHFQSP 63
Query: 132 KQLPLIGEMTTSPSFVD---SEHVGGNSSE-----LSDIQRSLRDLQTISP---SPELWL 180
+P GE+ S+++ S H+ + + LS+ + + ISP SP+ L
Sbjct: 64 PPVP--GEVLKVQSYLENPTSYHLQQSRDQKVREYLSETYGN-KFAAHISPAQGSPKP-L 119
Query: 181 PTSYEEVSS---LSSVI--EQPRTRGFYLQ-GATMNHDVDTTGNRYVGMDKILQFDYLSA 234
P + V + LSS P + L G+ + D N + +D +L F ++
Sbjct: 120 PAASPGVRAGHVLSSSAGNSAPNSPMAMLHIGSNPEREFDVIDN-IMCLDDVLGF--INP 176
Query: 235 SIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGT-GKARVRARRG 293
L + L+ +S P T VG+ S + A+ T T ++R A+
Sbjct: 177 ETQMPNTLPLSSSHLNVYSGDPQVTASLVGVTS--SSCPADLTQKRELTDAESRALAKER 234
Query: 294 QATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQVKV 349
Q D H++ ER RR I +R+K L L+P +N D K ++L +DY++ +Q K
Sbjct: 235 QKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQ---KD 291
Query: 350 LSMSR 354
L SR
Sbjct: 292 LQKSR 296
>TAIR|locus:2204569 [details] [associations]
symbol:AT1G30670 "AT1G30670" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC007060 EMBL:AF488587 IPI:IPI00540602 PIR:B86432
RefSeq:NP_174355.1 UniGene:At.40503 ProteinModelPortal:Q9SA82
SMR:Q9SA82 PRIDE:Q9SA82 EnsemblPlants:AT1G30670.1 GeneID:839947
KEGG:ath:AT1G30670 TAIR:At1g30670 eggNOG:NOG324437
HOGENOM:HOG000090323 InParanoid:Q9SA82 OMA:RRITEKT PhylomeDB:Q9SA82
ProtClustDB:CLSN2914140 Genevestigator:Q9SA82 Uniprot:Q9SA82
Length = 264
Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354
SIA R RR +I E+ + L +L+P S K + A M + YVKFLQ Q+++L + +
Sbjct: 140 SIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQAQIEILQLKQ 194
>UNIPROTKB|Q864F3 [details] [associations]
symbol:MITF "Microphthalmia-associated transcription
factor" species:9615 "Canis lupus familiaris" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 Pfam:PF00010 Pfam:PF11851
PROSITE:PS50888 SMART:SM00353 GO:GO:0006355 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 HSSP:P22415 CTD:4286
HOGENOM:HOG000231368 HOVERGEN:HBG006768 KO:K09455 OMA:YSNQGLP
GeneTree:ENSGT00390000004402 EMBL:AAEX03012128 EMBL:AY240952
EMBL:AY360380 EMBL:AY360373 EMBL:AY360374 EMBL:AY360375
EMBL:AY360376 EMBL:AY360377 EMBL:AY360378 EMBL:AY360379
RefSeq:NP_001003337.1 UniGene:Cfa.2682 STRING:Q864F3
Ensembl:ENSCAFT00000010493 GeneID:415126 KEGG:cfa:415126
NextBio:20818805 Uniprot:Q864F3
Length = 419
Score = 119 (46.9 bits), Expect = 0.00047, P = 0.00047
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 159 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 209
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 210 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 269
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 270 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 301
>UNIPROTKB|F1MX26 [details] [associations]
symbol:TFEB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0006959
"humoral immune response" evidence=IEA] [GO:0001892 "embryonic
placenta development" evidence=IEA] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 InterPro:IPR024098
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0006959 PANTHER:PTHR10014
GO:GO:0001892 GeneTree:ENSGT00390000004402 PANTHER:PTHR10014:SF9
OMA:HGSPFPS EMBL:DAAA02055059 IPI:IPI00714746
Ensembl:ENSBTAT00000036062 Uniprot:F1MX26
Length = 493
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 56/212 (26%), Positives = 92/212 (43%)
Query: 149 SEHVGGN-SSELSDIQRSLRDLQTISPSPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGA 207
SE G ++ +S Q S + L SP P S+ +S P ++ G+
Sbjct: 112 SETYGNKFAAHISPAQGSPKPLPAASPGVR---PAHVLSSSAGNSAPNSPMAM-LHI-GS 166
Query: 208 TMNHDVDTTGNRYVGMDKILQFDYLSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPS 267
+ D N + +D +L F ++ L + L+ +S P T VG+ S
Sbjct: 167 NPEREFDVIDN-IMCLDDVLGF--INPETQMPNTLPLSSSHLNVYSGDPQVTASLVGVTS 223
Query: 268 LQQTASANPTGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNK 326
+ A+ T T ++R A+ Q D H++ ER RR I +R+K L L+P +N
Sbjct: 224 --SSCPADLTQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKAND 281
Query: 327 TD----KASMLDEIIDYVKFLQLQVKVLSMSR 354
D K ++L +DY++ +Q K L SR
Sbjct: 282 LDVRWNKGTILKASVDYIRRMQ---KDLQKSR 310
>UNIPROTKB|B7Z757 [details] [associations]
symbol:TFEC "cDNA FLJ55256, highly similar to Homo sapiens
transcription factor EC (TFEC), transcript variant 1, mRNA"
species:9606 "Homo sapiens" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024101 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 HOGENOM:HOG000231368 HOVERGEN:HBG006768
EMBL:AC073130 PANTHER:PTHR10014:SF13 UniGene:Hs.125962
HGNC:HGNC:11754 EMBL:AC073141 EMBL:AC096551 EMBL:AK301479
IPI:IPI00946731 SMR:B7Z757 STRING:B7Z757 Ensembl:ENST00000484212
UCSC:uc011kmw.2 Uniprot:B7Z757
Length = 316
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 58/237 (24%), Positives = 99/237 (41%)
Query: 118 PAIPTLGSMNLGSPKQLPLIGEMTTSPSFVDSEHVGGNSSELSD---IQRSLRDLQTISP 174
PA P + S L S ++P E + P ++ NS D I +L+ Q P
Sbjct: 51 PARPQIYSSQLPSFTRVPAHLESSARPQLQKAQRQKVNSFMTLDHQIINPTLKWSQPAVP 110
Query: 175 SPELWLPTSYEEVSSLSSVIEQPRTRGFYLQGATMN---HDVDTTGNRYVGMDKILQFDY 231
S + ++ + S + + E P T+ + N H D + +GM+ + +
Sbjct: 111 SGGPLVQHAHTTLDSDAGLTENPLTKLLAIGKEDDNAQWHMEDVIED-IIGMESSFKEEG 169
Query: 232 LSASIVAKGEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRAR 291
+ ++ ++ L L +S + +GL S +S T R A+
Sbjct: 170 ADSPLLM--QRTLSGSILDVYSGEQGISPINMGLTSASCPSSLPMKREITETD-TRALAK 226
Query: 292 RGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQ 344
Q D H++ ER RR I R+K L L+P SN D K ++L ++Y+K+LQ
Sbjct: 227 ERQKKDNHNLIERRRRYNINYRIKELGTLIPKSNDPDMRWNKGTILKASVEYIKWLQ 283
>TAIR|locus:2044762 [details] [associations]
symbol:AT2G34820 "AT2G34820" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC004238 HOGENOM:HOG000090323 ProtClustDB:CLSN2914140
EMBL:AY234412 EMBL:AF488588 IPI:IPI00520911 PIR:T00464
RefSeq:NP_181028.2 UniGene:At.37756 ProteinModelPortal:Q84RD0
SMR:Q84RD0 STRING:Q84RD0 EnsemblPlants:AT2G34820.1 GeneID:818047
KEGG:ath:AT2G34820 TAIR:At2g34820 eggNOG:NOG260330
InParanoid:Q84RD0 OMA:EIFNETH PhylomeDB:Q84RD0
Genevestigator:Q84RD0 Uniprot:Q84RD0
Length = 291
Score = 116 (45.9 bits), Expect = 0.00051, P = 0.00051
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGAAG 359
SIA R RR +IAE+ L +L+P NK + A M YVKFLQ QV +L + + G
Sbjct: 169 SIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGILQLMQTTKKG 228
Query: 360 A 360
+
Sbjct: 229 S 229
>TAIR|locus:2195763 [details] [associations]
symbol:AT1G61660 "AT1G61660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006612
"protein targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC005882 EMBL:AF380649 EMBL:AY113072
EMBL:AY085602 EMBL:AF488630 IPI:IPI00521365 IPI:IPI00541480
PIR:A96642 RefSeq:NP_564782.1 RefSeq:NP_849836.1 UniGene:At.22850
ProteinModelPortal:Q94JL3 SMR:Q94JL3 IntAct:Q94JL3
EnsemblPlants:AT1G61660.1 GeneID:842462 KEGG:ath:AT1G61660
TAIR:At1g61660 eggNOG:NOG263728 HOGENOM:HOG000241059
InParanoid:Q94JL3 OMA:IQKDWSP PhylomeDB:Q94JL3
ProtClustDB:CLSN2688979 Genevestigator:Q94JL3 Uniprot:Q94JL3
Length = 393
Score = 120 (47.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 290 ARRGQATDPHSIAE-RLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVK 348
A++ + T P + ++R+E + +++ +LQ+LV KTD AS+L E I+Y+KFL QV
Sbjct: 265 AKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVT 324
Query: 349 VLS 351
VLS
Sbjct: 325 VLS 327
Score = 40 (19.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 416 LQNKGLCLMPIA 427
L+ GLCL+PI+
Sbjct: 358 LRGHGLCLVPIS 369
>MGI|MGI:103270 [details] [associations]
symbol:Tfeb "transcription factor EB" species:10090 "Mus
musculus" [GO:0001892 "embryonic placenta development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006959 "humoral
immune response" evidence=IMP] [GO:0007040 "lysosome organization"
evidence=ISO] [GO:0010508 "positive regulation of autophagy"
evidence=ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR011598 InterPro:IPR021802
InterPro:IPR024097 InterPro:IPR024098 Pfam:PF00010 Pfam:PF11851
PROSITE:PS50888 SMART:SM00353 MGI:MGI:103270 GO:GO:0005737
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0005667
GO:GO:0044212 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0006959
PANTHER:PTHR10014 GO:GO:0001892 eggNOG:NOG251286
HOGENOM:HOG000231368 HOVERGEN:HBG006768
GeneTree:ENSGT00390000004402 CTD:7942 KO:K15590 OrthoDB:EOG469QTV
ChiTaRS:TFEB PANTHER:PTHR10014:SF9 EMBL:AF079095 IPI:IPI00314502
RefSeq:NP_001155194.1 RefSeq:NP_001155195.1 RefSeq:NP_035679.3
UniGene:Mm.2305 ProteinModelPortal:Q9R210 SMR:Q9R210 IntAct:Q9R210
STRING:Q9R210 PhosphoSite:Q9R210 PaxDb:Q9R210 PRIDE:Q9R210
Ensembl:ENSMUST00000086932 Ensembl:ENSMUST00000113288 GeneID:21425
KEGG:mmu:21425 InParanoid:Q9R210 NextBio:300746 Bgee:Q9R210
CleanEx:MM_TCFEB Genevestigator:Q9R210
GermOnline:ENSMUSG00000023990 Uniprot:Q9R210
Length = 475
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 45/143 (31%), Positives = 70/143 (48%)
Query: 223 MDKILQFDYLSASIVAKGEQELPNH-PLSC-----FSSRPLPTVPTVGLPSLQQTASANP 276
+D I++ D + I E ++PN PLS +S P T VG+ S + A+
Sbjct: 160 IDNIMRLDSVLGYI--NPEMQMPNTLPLSSSHLNVYSGDPQVTASMVGVTS--SSCPADL 215
Query: 277 TGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KAS 331
T T ++R A+ Q D H++ ER RR I +R+K L L+P +N D K +
Sbjct: 216 TQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGT 275
Query: 332 MLDEIIDYVKFLQLQVKVLSMSR 354
+L +DY++ +Q K L SR
Sbjct: 276 ILKASVDYIRRMQ---KDLQKSR 295
>UNIPROTKB|F6UXQ5 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9544 "Macaca
mulatta" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 Pfam:PF00010 Pfam:PF11851
PROSITE:PS50888 SMART:SM00353 GO:GO:0006355 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 GeneTree:ENSGT00390000004402
Ensembl:ENSMMUT00000002969 Uniprot:F6UXQ5
Length = 525
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 265 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 315
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 316 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 375
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 376 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 407
>UNIPROTKB|O75030 [details] [associations]
symbol:MITF "Microphthalmia-associated transcription
factor" species:9606 "Homo sapiens" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0030316 "osteoclast differentiation" evidence=IEA] [GO:0042127
"regulation of cell proliferation" evidence=IEA] [GO:0043010
"camera-type eye development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045165 "cell
fate commitment" evidence=IEA] [GO:0045670 "regulation of
osteoclast differentiation" evidence=IEA] [GO:0046849 "bone
remodeling" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0030318 "melanocyte differentiation" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0043234 "protein complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0006461 "protein complex
assembly" evidence=IDA] [GO:0001077 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR011598 InterPro:IPR021802
InterPro:IPR024097 Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0043066 GO:GO:0043234
GO:GO:0006461 GO:GO:0006355 GO:GO:0016055 GO:GO:0003677
Pathway_Interaction_DB:p38alphabetadownstreampathway GO:GO:0046849
Pathway_Interaction_DB:il6_7pathway GO:GO:0003682 GO:GO:0003705
GO:GO:0042127 GO:GO:0001077 GO:GO:0043010 GO:GO:0045670
Gene3D:4.10.280.10 SUPFAM:SSF47459
Pathway_Interaction_DB:kitpathway PANTHER:PTHR10014 GO:GO:0030318
GO:GO:0045165 GO:GO:0030316 EMBL:AB006909 EMBL:AB006989 EMBL:Z29678
EMBL:GU355676 EMBL:AL110195 EMBL:AC099326 EMBL:AC104445
EMBL:AC104449 EMBL:AC124915 EMBL:BC026961 EMBL:BC065243
EMBL:AF034755 EMBL:AB032359 EMBL:AB032358 EMBL:AB032357
EMBL:AB009608 IPI:IPI00023896 IPI:IPI00215772 IPI:IPI00217203
IPI:IPI00217204 IPI:IPI00217206 IPI:IPI00217209 IPI:IPI00217210
IPI:IPI00217211 IPI:IPI00217212 IPI:IPI00293035 IPI:IPI00853423
PIR:I38024 PIR:T14752 RefSeq:NP_000239.1 RefSeq:NP_001171896.1
RefSeq:NP_006713.1 RefSeq:NP_937801.1 RefSeq:NP_937802.1
RefSeq:NP_937820.1 RefSeq:NP_937821.2 UniGene:Hs.166017
UniGene:Hs.618266 ProteinModelPortal:O75030 SMR:O75030
DIP:DIP-59573N IntAct:O75030 STRING:O75030 PhosphoSite:O75030
PaxDb:O75030 PRIDE:O75030 Ensembl:ENST00000314557
Ensembl:ENST00000314589 Ensembl:ENST00000328528
Ensembl:ENST00000352241 Ensembl:ENST00000394351
Ensembl:ENST00000394355 Ensembl:ENST00000448226
Ensembl:ENST00000531774 GeneID:4286 KEGG:hsa:4286 UCSC:uc003dnz.3
UCSC:uc003doa.3 UCSC:uc003dob.3 UCSC:uc003doe.3 UCSC:uc003dof.3
CTD:4286 GeneCards:GC03P069788 HGNC:HGNC:7105 HPA:CAB002578
HPA:HPA003259 MIM:103470 MIM:103500 MIM:156845 MIM:193510
MIM:614456 neXtProt:NX_O75030 Orphanet:293822 Orphanet:217071
Orphanet:42665 Orphanet:895 PharmGKB:PA30823 eggNOG:NOG251286
HOGENOM:HOG000231368 HOVERGEN:HBG006768 InParanoid:O75030 KO:K09455
OMA:YSNQGLP PhylomeDB:O75030 ChEMBL:CHEMBL1741165 GenomeRNAi:4286
NextBio:16861 PMAP-CutDB:O75030 ArrayExpress:O75030 Bgee:O75030
CleanEx:HS_MITF Genevestigator:O75030 GermOnline:ENSG00000187098
Uniprot:O75030
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|F6UXW1 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9544 "Macaca
mulatta" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 Pfam:PF00010 Pfam:PF11851
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0043066
GO:GO:0043234 GO:GO:0006461 GO:GO:0016055 GO:GO:0003677
GO:GO:0046849 GO:GO:0003682 GO:GO:0003705 GO:GO:0042127
GO:GO:0001077 GO:GO:0043010 GO:GO:0045670 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 GO:GO:0030318 GO:GO:0045165
GO:GO:0030316 OMA:YSNQGLP GeneTree:ENSGT00390000004402
EMBL:JU334565 EMBL:CM001254 UniGene:Mmu.21196
Ensembl:ENSMMUT00000002964 Uniprot:F6UXW1
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|F7FA74 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9483
"Callithrix jacchus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
OMA:YSNQGLP GeneTree:ENSGT00390000004402 EMBL:ACFV01078258
EMBL:ACFV01078259 EMBL:ACFV01078260 EMBL:ACFV01078261
EMBL:ACFV01078262 EMBL:ACFV01078263 EMBL:ACFV01078264
EMBL:ACFV01078265 EMBL:ACFV01078266 EMBL:ACFV01078267
EMBL:ACFV01078268 EMBL:ACFV01078269 EMBL:ACFV01078270
EMBL:ACFV01078271 EMBL:ACFV01078272 Ensembl:ENSCJAT00000025827
Uniprot:F7FA74
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|G1MFG8 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9646
"Ailuropoda melanoleuca" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0043066 GO:GO:0043234 GO:GO:0006461
GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010
GO:GO:0045670 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
GO:GO:0030318 GO:GO:0045165 GO:GO:0030316 OMA:YSNQGLP
GeneTree:ENSGT00390000004402 EMBL:ACTA01195455
Ensembl:ENSAMET00000018831 Uniprot:G1MFG8
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|G1QPX2 [details] [associations]
symbol:MITF "Uncharacterized protein" species:61853
"Nomascus leucogenys" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0043234 GO:GO:0006461 GO:GO:0001077 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 OMA:YSNQGLP
GeneTree:ENSGT00390000004402 EMBL:ADFV01025281 EMBL:ADFV01025282
EMBL:ADFV01025283 EMBL:ADFV01025284 EMBL:ADFV01025285
EMBL:ADFV01025286 EMBL:ADFV01025287 Ensembl:ENSNLET00000003140
Uniprot:G1QPX2
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|G1SH07 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9986
"Oryctolagus cuniculus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0043066 GO:GO:0043234 GO:GO:0006461
GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010
GO:GO:0045670 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
GO:GO:0030318 GO:GO:0045165 GO:GO:0030316 CTD:4286 OMA:YSNQGLP
GeneTree:ENSGT00390000004402 EMBL:AAGW02044538 EMBL:AAGW02044539
EMBL:AAGW02044540 EMBL:AAGW02044541 EMBL:AAGW02044542
RefSeq:XP_002713356.1 Ensembl:ENSOCUT00000002190 GeneID:100344730
Uniprot:G1SH07
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|G3S312 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9595 "Gorilla
gorilla gorilla" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 Pfam:PF00010 Pfam:PF11851
PROSITE:PS50888 SMART:SM00353 GO:GO:0006355 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 OMA:YSNQGLP
Ensembl:ENSGGOT00000022225 Uniprot:G3S312
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|G3TPP3 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9785
"Loxodonta africana" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0043066 GO:GO:0043234 GO:GO:0006461
GO:GO:0016055 GO:GO:0003677 GO:GO:0046849 GO:GO:0003682
GO:GO:0003705 GO:GO:0042127 GO:GO:0001077 GO:GO:0043010
GO:GO:0045670 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
GO:GO:0030318 GO:GO:0045165 GO:GO:0030316 OMA:YSNQGLP
GeneTree:ENSGT00390000004402 Ensembl:ENSLAFT00000022841
Uniprot:G3TPP3
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLLP 408
>UNIPROTKB|G3WZ06 [details] [associations]
symbol:MITF "Uncharacterized protein" species:9305
"Sarcophilus harrisii" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
OMA:YSNQGLP GeneTree:ENSGT00390000004402 EMBL:AEFK01083901
EMBL:AEFK01083902 EMBL:AEFK01083903 EMBL:AEFK01083904
EMBL:AEFK01083905 EMBL:AEFK01083906 EMBL:AEFK01083907
EMBL:AEFK01083908 EMBL:AEFK01083909 EMBL:AEFK01083910
EMBL:AEFK01083911 EMBL:AEFK01083912 EMBL:AEFK01083913
EMBL:AEFK01083914 EMBL:AEFK01083915 EMBL:AEFK01083916
Ensembl:ENSSHAT00000020826 Uniprot:G3WZ06
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLAISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|G7NZ88 [details] [associations]
symbol:EGM_10525 "Putative uncharacterized protein"
species:9541 "Macaca fascicularis" [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR011598 InterPro:IPR021802 InterPro:IPR024097
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
EMBL:CM001277 Uniprot:G7NZ88
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>UNIPROTKB|K6ZEW7 [details] [associations]
symbol:MITF "Microphthalmia-associated transcription
factor" species:9598 "Pan troglodytes" [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR011598 InterPro:IPR021802
InterPro:IPR024097 Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888
SMART:SM00353 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
EMBL:GABC01008132 EMBL:GABF01004511 EMBL:GABE01009020
Uniprot:K6ZEW7
Length = 526
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 266 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 316
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQLQ---VKVLS- 351
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ + K L
Sbjct: 317 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKELEN 376
Query: 352 -MSRLGAAGAVLPL-ITDGQAEA-SKGLSLSP 380
+L A L L I + + +A + GLSL P
Sbjct: 377 RQKKLEHANRHLLLRIQELEMQARAHGLSLIP 408
>RGD|1309583 [details] [associations]
symbol:Tfeb "transcription factor EB" species:10116 "Rattus
norvegicus" [GO:0001892 "embryonic placenta development"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006959 "humoral
immune response" evidence=IEA;ISO] [GO:0007040 "lysosome
organization" evidence=ISO] [GO:0010508 "positive regulation of
autophagy" evidence=ISO] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR011598
InterPro:IPR021802 InterPro:IPR024097 InterPro:IPR024098
Pfam:PF00010 Pfam:PF11851 PROSITE:PS50888 SMART:SM00353 RGD:1309583
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 GO:GO:0005667
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0006959 PANTHER:PTHR10014
GO:GO:0001892 EMBL:CH473987 eggNOG:NOG251286 HOGENOM:HOG000231368
HOVERGEN:HBG006768 GeneTree:ENSGT00390000004402 CTD:7942 KO:K15590
OrthoDB:EOG469QTV PANTHER:PTHR10014:SF9 OMA:HGSPFPS EMBL:AC129162
EMBL:BC099102 IPI:IPI00371748 RefSeq:NP_001020878.1
UniGene:Rn.22098 STRING:Q4KLM8 Ensembl:ENSRNOT00000039102
GeneID:316214 KEGG:rno:316214 UCSC:RGD:1309583 InParanoid:Q4KLM8
NextBio:670548 Genevestigator:Q4KLM8 Uniprot:Q4KLM8
Length = 535
Score = 119 (46.9 bits), Expect = 0.00068, P = 0.00068
Identities = 45/143 (31%), Positives = 70/143 (48%)
Query: 223 MDKILQFDYLSASIVAKGEQELPNH-PLSC-----FSSRPLPTVPTVGLPSLQQTASANP 276
+D I++ D + I E ++PN PLS +S P T VG+ S + A+
Sbjct: 220 IDNIMRLDSVLGYI--NPEMQMPNTLPLSSSHLNVYSGDPQVTASLVGVTS--SSCPADL 275
Query: 277 TGGCNGT-GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTD----KAS 331
T T ++R A+ Q D H++ ER RR I +R+K L L+P +N D K +
Sbjct: 276 TQKRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGT 335
Query: 332 MLDEIIDYVKFLQLQVKVLSMSR 354
+L +DY++ +Q K L SR
Sbjct: 336 ILKASVDYIRRMQ---KDLQKSR 355
>UNIPROTKB|Q53L62 [details] [associations]
symbol:LOC_Os11g15210 "Helix-loop-helix DNA-binding domain,
putative" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC145364 EnsemblPlants:LOC_Os11g15210.1
KEGG:dosa:Os11t0258700-00 Uniprot:Q53L62
Length = 458
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 281 NGTGKARVRAR-RGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDY 339
N G A +G + H ++ER RREK+ E L+ +VP+ +K DKAS+L E I Y
Sbjct: 226 NADGSAATMTTDQGSSIKNHVMSERRRREKLKEMFLILKSVVPSIHKVDKASILAETIAY 285
Query: 340 VKFLQLQVKVLSMS 353
+K L+ +V+ L S
Sbjct: 286 LKELEKRVEELESS 299
>UNIPROTKB|C9JBI8 [details] [associations]
symbol:MITF "Microphthalmia-associated transcription
factor" species:9606 "Homo sapiens" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR011598
InterPro:IPR024097 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
EMBL:AC099326 EMBL:AC104445 EMBL:AC104449 EMBL:AC124915
HGNC:HGNC:7105 HOGENOM:HOG000231368 IPI:IPI00952616
ProteinModelPortal:C9JBI8 SMR:C9JBI8 STRING:C9JBI8
Ensembl:ENST00000451708 ArrayExpress:C9JBI8 Bgee:C9JBI8
Uniprot:C9JBI8
Length = 361
Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
Identities = 37/109 (33%), Positives = 54/109 (49%)
Query: 240 GEQELPNHPLSCFSSRPLPTVPTVGLPSLQQTASANPTGGCNGTGKARVRARRGQATDPH 299
G Q LP L+ +S P +P + + TA PT +AR A+ Q D H
Sbjct: 250 GNQGLPPPGLTISNSCPA-NLPNI---KRELTACIFPT-----ESEARALAKERQKKDNH 300
Query: 300 SIAERLRREKIAERMKNLQELVPNSNKTD----KASMLDEIIDYVKFLQ 344
++ ER RR I +R+K L L+P SN D K ++L +DY++ LQ
Sbjct: 301 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 349
>UNIPROTKB|Q8H8E4 [details] [associations]
symbol:OJ1006F06.1 "Putative bHLH transcription protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000029066 EMBL:AC099399 ProteinModelPortal:Q8H8E4
STRING:Q8H8E4 Gramene:Q8H8E4 Uniprot:Q8H8E4
Length = 430
Score = 117 (46.2 bits), Expect = 0.00081, P = 0.00081
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 273 SANPTGGCNGTGKA-RVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKAS 331
S+ G G G R++ + +AER RR+++ +R+ L+ +VP +K D+ S
Sbjct: 156 SSEMMAGIRGVGGGVHPRSKLHGTPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTS 215
Query: 332 MLDEIIDYVKFLQLQVKVLSMSRLGAAGAVLPLITDGQAEASKG 375
+L + IDYVK L ++K L +G L L+ ++S G
Sbjct: 216 ILGDTIDYVKELTERIKTLE-EEIGVTPEELDLLNT-MKDSSSG 257
>TAIR|locus:2123954 [details] [associations]
symbol:AT4G29930 "AT4G29930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161575 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AK117730 EMBL:BT005869 EMBL:AY568654
EMBL:AJ630482 EMBL:AK176201 EMBL:AK176276 EMBL:AK176674
EMBL:AK222212 EMBL:AK228201 EMBL:AF488569 IPI:IPI00516806
IPI:IPI00544272 IPI:IPI00546879 IPI:IPI00892082
RefSeq:NP_001031752.1 RefSeq:NP_001078471.1 RefSeq:NP_001119080.1
RefSeq:NP_194722.2 UniGene:At.44068 ProteinModelPortal:Q700E3
SMR:Q700E3 IntAct:Q700E3 EnsemblPlants:AT4G29930.3 GeneID:829116
KEGG:ath:AT4G29930 TAIR:At4g29930 eggNOG:NOG294060
HOGENOM:HOG000006429 InParanoid:Q8GYC3 OMA:PIENIGE PhylomeDB:Q700E3
ProtClustDB:CLSN2680169 Genevestigator:Q700E3 Uniprot:Q700E3
Length = 263
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 283 TGKARVRARRGQATDPHS----IAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIID 338
+G + G AT P S ++ER RR+K+ +R+ L+ +VPN +K DKAS++ + ID
Sbjct: 35 SGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSID 94
Query: 339 YVKFLQLQVKVL 350
Y++ L Q K L
Sbjct: 95 YMQELIDQEKTL 106
>UNIPROTKB|Q6YUS3 [details] [associations]
symbol:OSJNBb0088N06.15 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0048653
"anther development" evidence=IMP] [GO:0048654 "anther
morphogenesis" evidence=IMP] [GO:0048657 "tapetal cell
differentiation" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG313389
HOGENOM:HOG000033929 OMA:PRTKSCE EMBL:AP008208 EMBL:CM000139
GO:GO:0048657 EMBL:AP004078 EMBL:AP005851 RefSeq:NP_001045710.1
UniGene:Os.50000 EnsemblPlants:LOC_Os02g02820.1 GeneID:4328113
KEGG:osa:4328113 ProtClustDB:CLSN2692391 Uniprot:Q6YUS3
Length = 552
Score = 118 (46.6 bits), Expect = 0.00092, P = 0.00092
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 281 NGTGKARVR-ARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDY 339
+G G+ R A+R Q + AER RR+K+ + L+ LVPN K D+AS+L + IDY
Sbjct: 269 DGDGEGRSGGAKRQQCKNLE--AERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDY 326
Query: 340 VKFLQLQVKVL 350
+ LQ QVK L
Sbjct: 327 IVGLQKQVKEL 337
>TAIR|locus:2119901 [details] [associations]
symbol:AT4G29100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL078470
EMBL:AL161574 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488634 EMBL:AY081316
EMBL:BT000121 IPI:IPI00517615 PIR:T08965 RefSeq:NP_194639.1
UniGene:At.3408 ProteinModelPortal:Q8S3D1 SMR:Q8S3D1 PRIDE:Q8S3D1
EnsemblPlants:AT4G29100.1 GeneID:829031 KEGG:ath:AT4G29100
TAIR:At4g29100 eggNOG:NOG272582 HOGENOM:HOG000005841
InParanoid:Q9SZD9 OMA:PDRSSEC PhylomeDB:Q8S3D1
ProtClustDB:CLSN2915796 Genevestigator:Q8S3D1 Uniprot:Q8S3D1
Length = 407
Score = 121 (47.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 46/161 (28%), Positives = 73/161 (45%)
Query: 280 CNGT--GKARVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEII 337
CN G + + R Q + ++R+EK+ R+ L +LV KTD AS+L E I
Sbjct: 237 CNSLEIGGSTNKKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAI 296
Query: 338 DYVKFLQLQVKVLSMSRLGA-AGAVLPLITDGQAEASKGLSLSPQADQGVDISLNSDQIA 396
Y++FLQ Q++ LS G A + Q + S + P+ D G L +DQ
Sbjct: 297 GYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGDRS---CIFPE-DPG---QLVNDQCM 349
Query: 397 FEEEVVKLMESNVTKAMQY---LQNKGLCLMPIALATAISS 434
N + + L+++GLCL+PI+ + S
Sbjct: 350 KRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGS 390
Score = 37 (18.1 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 12 SSWSDVNAKERSSWDYSEPL 31
SSW + N SW S+ L
Sbjct: 90 SSWLESNDLPPESWSLSQLL 109
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 519 498 0.00084 119 3 11 23 0.49 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 170
No. of states in DFA: 615 (65 KB)
Total size of DFA: 271 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.92u 0.11s 50.03t Elapsed: 00:00:03
Total cpu time: 49.93u 0.11s 50.04t Elapsed: 00:00:03
Start: Mon May 20 15:59:21 2013 End: Mon May 20 15:59:24 2013
WARNINGS ISSUED: 1