Query 010045
Match_columns 519
No_of_seqs 275 out of 1027
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 20:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 1.4E-12 3.1E-17 100.4 4.9 52 297-348 6-60 (60)
2 smart00353 HLH helix loop heli 99.3 8.5E-12 1.8E-16 94.6 6.3 49 300-348 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 8.9E-12 1.9E-16 96.0 5.5 48 297-344 3-55 (55)
4 KOG1319 bHLHZip transcription 99.0 1.6E-10 3.4E-15 111.2 4.1 57 297-353 64-127 (229)
5 KOG1318 Helix loop helix trans 99.0 9.9E-10 2.1E-14 115.9 8.6 55 296-350 234-292 (411)
6 KOG4304 Transcriptional repres 98.2 6.5E-07 1.4E-11 89.6 3.1 52 297-348 34-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.2 2.4E-06 5.2E-11 96.9 6.0 51 296-346 21-75 (803)
8 KOG2588 Predicted DNA-binding 98.1 1.6E-05 3.6E-10 90.9 10.5 72 285-356 265-338 (953)
9 KOG2483 Upstream transcription 97.7 0.00013 2.8E-09 72.9 7.7 57 296-352 60-119 (232)
10 KOG0561 bHLH transcription fac 97.4 8.2E-05 1.8E-09 76.7 2.4 54 297-350 62-117 (373)
11 KOG3960 Myogenic helix-loop-he 97.2 0.0007 1.5E-08 68.5 6.2 57 299-355 122-180 (284)
12 KOG4029 Transcription factor H 96.8 0.0012 2.7E-08 64.7 4.4 58 297-354 111-172 (228)
13 PLN03217 transcription factor 96.8 0.0028 6E-08 55.2 5.7 48 306-353 18-71 (93)
14 KOG3910 Helix loop helix trans 94.9 0.022 4.8E-07 62.4 3.8 54 297-350 528-585 (632)
15 KOG4447 Transcription factor T 92.3 0.074 1.6E-06 50.9 1.8 51 298-348 81-133 (173)
16 KOG3560 Aryl-hydrocarbon recep 83.4 1.3 2.9E-05 49.7 4.4 39 303-341 33-75 (712)
17 KOG3558 Hypoxia-inducible fact 81.6 0.87 1.9E-05 52.2 2.1 42 301-342 52-97 (768)
18 KOG3559 Transcriptional regula 81.2 1.7 3.6E-05 47.6 3.9 42 301-342 7-52 (598)
19 KOG3898 Transcription factor N 76.2 2.9 6.2E-05 42.6 3.8 50 297-346 74-126 (254)
20 KOG4395 Transcription factor A 55.1 17 0.00036 37.8 4.4 51 297-347 176-229 (285)
21 KOG3582 Mlx interactors and re 42.6 12 0.00026 43.5 1.3 56 296-351 652-712 (856)
22 PLN02705 beta-amylase 40.4 1E+02 0.0022 35.9 8.0 15 294-308 83-97 (681)
23 KOG4447 Transcription factor T 36.8 25 0.00054 34.2 2.2 44 302-345 29-74 (173)
24 KOG3582 Mlx interactors and re 31.4 15 0.00033 42.7 -0.1 54 296-352 788-846 (856)
25 KOG2391 Vacuolar sorting prote 22.9 5.6E+02 0.012 28.1 9.4 55 296-351 210-266 (365)
26 TIGR00986 3a0801s05tom22 mitoc 21.9 47 0.001 31.9 1.3 38 307-344 48-85 (145)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=1.4e-12 Score=100.36 Aligned_cols=52 Identities=37% Similarity=0.645 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
..|+.+||+||++||+.|..|+.+||.. .|+||++||+.||+||++|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5699999999999999999999999998 899999999999999999999863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.27 E-value=8.5e-12 Score=94.63 Aligned_cols=49 Identities=39% Similarity=0.594 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 010045 300 SIAERLRREKIAERMKNLQELVPN---SNKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 300 ~~aER~RRekIner~~aLrsLVP~---~~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
+..||+||++||+.|..|+.+||. ..|+||++||..||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999995 6799999999999999999999986
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.25 E-value=8.9e-12 Score=96.02 Aligned_cols=48 Identities=44% Similarity=0.699 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 344 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~-----~K~DKASIL~eAI~YIk~Lq 344 (519)
..|+..||+||++||+.|..|+.+||.+ .|+||++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4599999999999999999999999987 78999999999999999997
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.03 E-value=1.6e-10 Score=111.23 Aligned_cols=57 Identities=37% Similarity=0.555 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS-------NKTDKASMLDEIIDYVKFLQLQVKVLSMS 353 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~-------~K~DKASIL~eAI~YIk~Lq~qVk~Le~~ 353 (519)
..|..+||+||+.|+..+..|+.|||.| .|+.||.||+++|+||.+|+.++.+.+.+
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e 127 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE 127 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999976 37779999999999999999998877754
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.99 E-value=9.9e-10 Score=115.89 Aligned_cols=55 Identities=36% Similarity=0.603 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQLQVKVL 350 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~qVk~L 350 (519)
+..|+..|||||++||++|++|..|||.+ .|..|..||..+++||+.||+..++.
T Consensus 234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999988 46679999999999999999876633
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.22 E-value=6.5e-07 Score=89.64 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC--------CCCChhhHHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS--------NKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~--------~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
..|-+.||+||+|||+.+.+|+.|||.+ .|++||-||+-|++|++.||.+.+
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 5588999999999999999999999953 678899999999999999987643
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.15 E-value=2.4e-06 Score=96.87 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=48.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQLQ 346 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~q 346 (519)
+++|+.+|||||+++|.-|.+|.+|||.+ .|+||.+||..||++||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 37899999999999999999999999986 6999999999999999999986
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.07 E-value=1.6e-05 Score=90.88 Aligned_cols=72 Identities=29% Similarity=0.449 Sum_probs=59.8
Q ss_pred cCcccccCC-CCCCcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 010045 285 KARVRARRG-QATDPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLG 356 (519)
Q Consensus 285 kpr~r~rr~-~a~~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~~ 356 (519)
+|..|-.-+ ..+.+|++.|||-|--|||||.+|+.+||+. .|+.|.++|..||+||++|+...+.|...+..
T Consensus 265 ~Pi~rl~~G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 265 KPIKRLLPGGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred CchhhcCCCCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 444443332 4578899999999999999999999999986 69999999999999999999988877755443
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.66 E-value=0.00013 Score=72.85 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=48.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCC--CCC-ChhhHHHHHHHHHHHHHHHHHHHHh
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNS--NKT-DKASMLDEIIDYVKFLQLQVKVLSM 352 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~--~K~-DKASIL~eAI~YIk~Lq~qVk~Le~ 352 (519)
+..|+.-||+||..|++.|..|+.+||.. .|. +.++||.+|++||+.|+.+..+.+.
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 36699999999999999999999999976 222 3699999999999999987766653
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.39 E-value=8.2e-05 Score=76.68 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=47.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPN--SNKTDKASMLDEIIDYVKFLQLQVKVL 350 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~--~~K~DKASIL~eAI~YIk~Lq~qVk~L 350 (519)
+--+..||+|=.-||-.|..||+|+|. +.|..||.||+.+.+||.+|..+.-+|
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 345678999999999999999999996 589999999999999999998876554
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.17 E-value=0.0007 Score=68.49 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010045 299 HSIAERLRREKIAERMKNLQE-LVPN-SNKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 355 (519)
Q Consensus 299 H~~aER~RRekIner~~aLrs-LVP~-~~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~ 355 (519)
-.+.||||=+|+||.|.+|.. -.++ -++.-|..||..||+||..||.-++++.+...
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 448999999999999999976 4454 36788999999999999999999999986543
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.82 E-value=0.0012 Score=64.65 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=50.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPN----SNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~----~~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~ 354 (519)
..++..||.|=+-+|..|..||.+||. ..|..|..+|.-||.||++|+.-++.-+...
T Consensus 111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 457788999999999999999999995 4678999999999999999999887766543
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.80 E-value=0.0028 Score=55.16 Aligned_cols=48 Identities=27% Similarity=0.473 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045 306 RREKIAERMKNLQELVPNS------NKTDKASMLDEIIDYVKFLQLQVKVLSMS 353 (519)
Q Consensus 306 RRekIner~~aLrsLVP~~------~K~DKASIL~eAI~YIk~Lq~qVk~Le~~ 353 (519)
--+.|+|.+..||+|+|.. .|...+-||+|+..||+.||.+|..|.+.
T Consensus 18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999964 45556679999999999999999999875
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.92 E-value=0.022 Score=62.44 Aligned_cols=54 Identities=26% Similarity=0.304 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCCCC----CChhhHHHHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNSNK----TDKASMLDEIIDYVKFLQLQVKVL 350 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~~K----~DKASIL~eAI~YIk~Lq~qVk~L 350 (519)
...++.||.|=+.|||.|++|..+.----| ..|.-||..||.-|-.|++||++-
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 457788898888999999999998653323 358999999999999999999864
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.32 E-value=0.074 Score=50.92 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 010045 298 PHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 298 ~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
-|++.||+|-..+|+.|.+||.++|.. .|..|.--|.-|..||.+|-+-.+
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 499999999999999999999999964 788888889999999999976543
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=83.42 E-value=1.3 Score=49.66 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 010045 303 ERLRREKIAERMKNLQELVPN----SNKTDKASMLDEIIDYVK 341 (519)
Q Consensus 303 ER~RRekIner~~aLrsLVP~----~~K~DKASIL~eAI~YIk 341 (519)
-||-|||+|-.+..|..|+|- ..|.||.|||.=++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 467799999999999999995 489999999999999986
No 17
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=81.57 E-value=0.87 Score=52.19 Aligned_cols=42 Identities=38% Similarity=0.525 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 010045 301 IAERLRREKIAERMKNLQELVPN----SNKTDKASMLDEIIDYVKF 342 (519)
Q Consensus 301 ~aER~RRekIner~~aLrsLVP~----~~K~DKASIL~eAI~YIk~ 342 (519)
-|.|.||-|-|+-|.+|..+||- ....|||+|+.=||-|+|-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 45699999999999999999993 2578999999999999874
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=81.17 E-value=1.7 Score=47.60 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHH
Q 010045 301 IAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKF 342 (519)
Q Consensus 301 ~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~ 342 (519)
-+.|.||++-|-.|.+|..++|-. ...||++|+.=+..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 445899999999999999999953 568999999999999984
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=76.19 E-value=2.9 Score=42.55 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=41.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQ 346 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~q 346 (519)
..=+..||.|--.+|+-|..||++||.+ .|+.|.-.|.-|-.||..|++-
T Consensus 74 ~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 74 LKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred ccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 4456788988899999999999999954 6788888898888888877654
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=55.09 E-value=17 Score=37.84 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=43.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQV 347 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qV 347 (519)
..-+..||+|=..+|..|..||..||.. .|..|-.-|+.|-.||--|-..+
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 3466889999999999999999999975 57778888999999998886654
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=42.64 E-value=12 Score=43.51 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQLQVKVLS 351 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~-----~K~DKASIL~eAI~YIk~Lq~qVk~Le 351 (519)
...|+.+|.+||..|+-.+..|-.++.+. .||.++.-++..+.||.-++.....+.
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 46699999999999999999999999864 577788889999999988877655544
No 22
>PLN02705 beta-amylase
Probab=40.45 E-value=1e+02 Score=35.87 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=10.5
Q ss_pred CCCCcchHHHHHHHH
Q 010045 294 QATDPHSIAERLRRE 308 (519)
Q Consensus 294 ~a~~~H~~aER~RRe 308 (519)
+.+++....||+||-
T Consensus 83 ~e~e~~~~rer~rra 97 (681)
T PLN02705 83 KEKERTKLRERHRRA 97 (681)
T ss_pred hhhhhhHHHHHHHHH
Confidence 345667788887774
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=36.79 E-value=25 Score=34.22 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHH
Q 010045 302 AERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQL 345 (519)
Q Consensus 302 aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~ 345 (519)
.||.|..++++.+.-|+.|+|+. .++.+---|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 58899999999999999999975 333222225555666665544
No 24
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=31.37 E-value=15 Score=42.69 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQLQVKVLSM 352 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~-----~K~DKASIL~eAI~YIk~Lq~qVk~Le~ 352 (519)
...|+-++|+||-.+.++|..|-+|.|.. .++.+++||. +.|+.+++.-+.+.+
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e 846 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTE 846 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHh
Confidence 34588999999999999999999999964 5678999998 888898888777765
No 25
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.95 E-value=5.6e+02 Score=28.10 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHH
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNSNKT--DKASMLDEIIDYVKFLQLQVKVLS 351 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~~K~--DKASIL~eAI~YIk~Lq~qVk~Le 351 (519)
...|...|+.|| |..+++..|+++.-....+ +-.....+-..-+..|++|+..|.
T Consensus 210 svisa~~eklR~-r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 210 SVISAVREKLRR-RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 355666666554 4455555555554444332 223334444444555555555554
No 26
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=21.93 E-value=47 Score=31.88 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHH
Q 010045 307 REKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQ 344 (519)
Q Consensus 307 RekIner~~aLrsLVP~~~K~DKASIL~eAI~YIk~Lq 344 (519)
-|-|-|||.+|..+||+..+.--.++..-+..++|.+=
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~ 85 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTL 85 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999877656667777777777653
Done!