Query 010045
Match_columns 519
No_of_seqs 275 out of 1027
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 18:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.5E-15 1.6E-19 123.4 6.7 59 297-355 8-67 (82)
2 4ati_A MITF, microphthalmia-as 99.5 1.2E-14 4.1E-19 128.4 7.6 61 293-353 25-89 (118)
3 1an4_A Protein (upstream stimu 99.5 1.6E-14 5.4E-19 114.6 3.2 53 296-348 6-64 (65)
4 1a0a_A BHLH, protein (phosphat 99.5 9.9E-15 3.4E-19 116.4 1.3 53 296-348 3-62 (63)
5 4h10_B Circadian locomoter out 99.4 8.7E-14 3E-18 113.9 6.4 55 297-351 10-65 (71)
6 1nkp_B MAX protein, MYC proto- 99.4 4.2E-13 1.4E-17 111.0 6.5 58 297-354 4-63 (83)
7 1hlo_A Protein (transcription 99.4 4E-13 1.4E-17 110.7 6.3 58 297-354 14-73 (80)
8 4h10_A ARYL hydrocarbon recept 99.4 4.4E-14 1.5E-18 115.9 0.5 49 297-345 11-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.3 1.4E-12 4.7E-17 110.1 6.7 57 297-353 8-67 (88)
10 3u5v_A Protein MAX, transcript 99.3 2E-12 7E-17 106.7 4.4 56 297-352 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 3.6E-11 1.2E-15 99.9 7.5 58 297-354 3-63 (80)
12 4f3l_A Mclock, circadian locom 98.9 1.2E-09 4.2E-14 109.2 6.1 51 297-347 14-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.9E-09 6.5E-14 87.4 5.3 52 297-348 14-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 4.6E-09 1.6E-13 83.1 6.0 51 298-348 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 3.3E-09 1.1E-13 107.6 3.0 50 297-346 15-68 (387)
16 4ath_A MITF, microphthalmia-as 98.4 3.6E-07 1.2E-11 77.0 6.2 48 306-353 3-54 (83)
17 2lfh_A DNA-binding protein inh 98.3 2.3E-07 8E-12 75.6 2.3 45 301-345 20-67 (68)
18 4aya_A DNA-binding protein inh 97.7 7.5E-05 2.6E-09 64.6 6.7 49 303-351 33-84 (97)
19 3fx7_A Putative uncharacterize 47.3 32 0.0011 29.6 5.5 24 333-356 65-88 (94)
20 2wt7_A Proto-oncogene protein 36.6 58 0.002 25.3 5.2 39 303-354 1-39 (63)
21 1xkm_B Distinctin chain B; por 24.4 69 0.0024 21.3 3.0 20 330-349 3-22 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.55 E-value=4.5e-15 Score=123.37 Aligned_cols=59 Identities=31% Similarity=0.528 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 355 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~~ 355 (519)
..|+.+||+||++||++|.+|+.|||++ .|+|||+||.+||+||++||.+++.|+.+..
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999997 8999999999999999999999999997643
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.53 E-value=1.2e-14 Score=128.45 Aligned_cols=61 Identities=34% Similarity=0.528 Sum_probs=51.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045 293 GQATDPHSIAERLRREKIAERMKNLQELVPNSN----KTDKASMLDEIIDYVKFLQLQVKVLSMS 353 (519)
Q Consensus 293 ~~a~~~H~~aER~RRekIner~~aLrsLVP~~~----K~DKASIL~eAI~YIk~Lq~qVk~Le~~ 353 (519)
.+.+.+|+.+||+||++||++|.+|+.|||++. |++|++||.+||+||++||.+++.|+..
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999999999999999874 6789999999999999999999999864
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=1.6e-14 Score=114.59 Aligned_cols=53 Identities=28% Similarity=0.495 Sum_probs=49.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNSN------KTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~~------K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
+..|+.+||+||++||+.|.+|+.|||.+. |+||++||..||+||++||++++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999875 78999999999999999998753
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.45 E-value=9.9e-15 Score=116.43 Aligned_cols=53 Identities=26% Similarity=0.482 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 010045 296 TDPHSIAERLRREKIAERMKNLQELVPNS-------NKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 296 ~~~H~~aER~RRekIner~~aLrsLVP~~-------~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
+.+|+.+||+||++||+.|.+|+.|||++ .|.+||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999999999999965 466799999999999999998764
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=113.90 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS-NKTDKASMLDEIIDYVKFLQLQVKVLS 351 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~-~K~DKASIL~eAI~YIk~Lq~qVk~Le 351 (519)
.+|+.+||+||++||++|.+|+.|||+. .|+||++||+.||+||++||.++.=|+
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5799999999999999999999999975 699999999999999999999987665
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.38 E-value=4.2e-13 Score=111.03 Aligned_cols=58 Identities=24% Similarity=0.499 Sum_probs=54.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~ 354 (519)
..|+..||+||++||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+.+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999974 899999999999999999999999998653
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=4e-13 Score=110.74 Aligned_cols=58 Identities=24% Similarity=0.499 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~ 354 (519)
..|+..||+||.+||+.|..|+.+||.+ .|++|++||..||+||++|+++++.|+.+.
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999976 699999999999999999999999999764
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.38 E-value=4.4e-14 Score=115.94 Aligned_cols=49 Identities=33% Similarity=0.470 Sum_probs=46.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQL 345 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~ 345 (519)
..|+.+||+||++||+.|.+|+.|||.+ .|+|||+||+.||+||+.|+.
T Consensus 11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999999999976 799999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.33 E-value=1.4e-12 Score=110.05 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=53.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLSMS 353 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le~~ 353 (519)
..|+..||+||+.||++|..|+.+||.. .|++|++||.+||+||++|+.+.+.|...
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999975 69999999999999999999999988754
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.27 E-value=2e-12 Score=106.72 Aligned_cols=56 Identities=27% Similarity=0.378 Sum_probs=49.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPN---SNKT-DKASMLDEIIDYVKFLQLQVKVLSM 352 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~---~~K~-DKASIL~eAI~YIk~Lq~qVk~Le~ 352 (519)
..|+..||+||+.||+.|.+|+.+||. ..|. .|+.||..||+||++||+++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999995 3555 6889999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.18 E-value=3.6e-11 Score=99.93 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~ 354 (519)
..|+..||+||..||+.|.+|+.+||.. .|..|++||..|++||++|+++.+.|..++
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 688999999999999999999999998754
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=1.2e-09 Score=109.24 Aligned_cols=51 Identities=25% Similarity=0.461 Sum_probs=43.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVP-NSNKTDKASMLDEIIDYVKFLQLQV 347 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP-~~~K~DKASIL~eAI~YIk~Lq~qV 347 (519)
..|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..-
T Consensus 14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999999 5679999999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.87 E-value=1.9e-09 Score=87.39 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=47.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVPNS--NKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP~~--~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
..|+..||+|+..||+.|..|+.+||.. .|+.|..||..||+||.+|++.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4599999999999999999999999964 789999999999999999998753
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.82 E-value=4.6e-09 Score=83.14 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 010045 298 PHSIAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVK 348 (519)
Q Consensus 298 ~H~~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk 348 (519)
.|+..||+|+..||+.|..|+.+||.. .|+.|..+|..||+||++|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999964 589999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=3.3e-09 Score=107.58 Aligned_cols=50 Identities=34% Similarity=0.456 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 010045 297 DPHSIAERLRREKIAERMKNLQELVP----NSNKTDKASMLDEIIDYVKFLQLQ 346 (519)
Q Consensus 297 ~~H~~aER~RRekIner~~aLrsLVP----~~~K~DKASIL~eAI~YIk~Lq~q 346 (519)
.+|+.+||+||+|||+.|.+|+.||| ...|+||++||..||.|||.|+..
T Consensus 15 ~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 15 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred ccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 67999999999999999999999999 568999999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.40 E-value=3.6e-07 Score=76.96 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 010045 306 RREKIAERMKNLQELVPNS----NKTDKASMLDEIIDYVKFLQLQVKVLSMS 353 (519)
Q Consensus 306 RRekIner~~aLrsLVP~~----~K~DKASIL~eAI~YIk~Lq~qVk~Le~~ 353 (519)
-|..||++|.+|..|||.+ .|.+|++||..||+||++||+.++.+...
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999975 57899999999999999999988877653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.28 E-value=2.3e-07 Score=75.55 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 010045 301 IAERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQL 345 (519)
Q Consensus 301 ~aER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~ 345 (519)
..||+|+..||+.|..||.+||.. .|+.|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 347889999999999999999965 689999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.66 E-value=7.5e-05 Score=64.56 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010045 303 ERLRREKIAERMKNLQELVPNS---NKTDKASMLDEIIDYVKFLQLQVKVLS 351 (519)
Q Consensus 303 ER~RRekIner~~aLrsLVP~~---~K~DKASIL~eAI~YIk~Lq~qVk~Le 351 (519)
||.|=..||+.|..||.+||.. .|+.|..+|.-||+||+.|++.++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778888999999999999964 688999999999999999999876543
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=47.33 E-value=32 Score=29.58 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 010045 333 LDEIIDYVKFLQLQVKVLSMSRLG 356 (519)
Q Consensus 333 L~eAI~YIk~Lq~qVk~Le~~~~~ 356 (519)
.+.|=+||.+|+++|+.|+..++.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHH
Confidence 457789999999999999987764
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.57 E-value=58 Score=25.30 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 010045 303 ERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 354 (519)
Q Consensus 303 ER~RRekIner~~aLrsLVP~~~K~DKASIL~eAI~YIk~Lq~qVk~Le~~~ 354 (519)
||++|.+...++.+.+. =..-.+|+..|+.+|..|+..+
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777664 1334567777777777777654
No 21
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.41 E-value=69 Score=21.33 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010045 330 ASMLDEIIDYVKFLQLQVKV 349 (519)
Q Consensus 330 ASIL~eAI~YIk~Lq~qVk~ 349 (519)
.+-|-+|-+|+.+|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999988763
Done!