Query 010046
Match_columns 519
No_of_seqs 374 out of 2593
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 20:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0458 Elongation factor 1 al 100.0 3.9E-37 8.5E-42 326.4 20.8 222 262-489 173-395 (603)
2 COG5256 TEF1 Translation elong 100.0 1.3E-35 2.8E-40 305.7 18.1 218 263-489 4-221 (428)
3 PLN00043 elongation factor 1-a 100.0 2.9E-29 6.2E-34 269.5 19.3 218 263-489 4-223 (447)
4 PTZ00141 elongation factor 1- 100.0 3.7E-29 7.9E-34 268.7 18.8 217 263-488 4-222 (446)
5 COG2895 CysN GTPases - Sulfate 100.0 3E-29 6.6E-34 252.9 15.7 209 263-489 3-213 (431)
6 PRK12317 elongation factor 1-a 100.0 1.5E-28 3.2E-33 262.9 19.2 210 263-488 3-214 (425)
7 cd01883 EF1_alpha Eukaryotic e 100.0 7.9E-28 1.7E-32 235.2 16.8 213 268-489 1-215 (219)
8 PRK05124 cysN sulfate adenylyl 100.0 7.7E-28 1.7E-32 260.3 17.2 216 245-475 9-226 (474)
9 cd04166 CysN_ATPS CysN_ATPS su 100.0 1.6E-27 3.6E-32 231.1 17.2 204 268-489 1-204 (208)
10 TIGR02034 CysN sulfate adenyly 100.0 1E-27 2.2E-32 255.1 17.1 195 267-474 1-197 (406)
11 TIGR00483 EF-1_alpha translati 100.0 2.3E-27 5E-32 253.8 19.0 213 263-488 4-216 (426)
12 cd01884 EF_Tu EF-Tu subfamily. 99.9 2E-25 4.3E-30 215.0 18.4 190 266-489 2-191 (195)
13 PRK05506 bifunctional sulfate 99.9 8.3E-26 1.8E-30 252.8 17.3 209 263-489 21-231 (632)
14 PF00009 GTP_EFTU: Elongation 99.9 8.3E-25 1.8E-29 208.5 11.9 178 264-466 1-182 (188)
15 PRK12735 elongation factor Tu; 99.9 3.2E-23 6.9E-28 220.0 20.0 176 261-460 7-182 (396)
16 CHL00071 tufA elongation facto 99.9 1.9E-23 4.2E-28 222.5 17.2 189 261-473 7-197 (409)
17 PLN03126 Elongation factor Tu; 99.9 3.8E-23 8.2E-28 223.5 18.4 175 262-460 77-251 (478)
18 PRK12736 elongation factor Tu; 99.9 2.1E-23 4.5E-28 221.2 15.6 172 262-457 8-179 (394)
19 TIGR00485 EF-Tu translation el 99.9 1E-22 2.3E-27 215.9 18.7 173 262-458 8-180 (394)
20 KOG0459 Polypeptide release fa 99.9 1.7E-23 3.7E-28 214.2 11.1 212 263-477 76-290 (501)
21 PRK00049 elongation factor Tu; 99.9 1.5E-22 3.3E-27 214.8 18.3 184 261-474 7-190 (396)
22 cd04171 SelB SelB subfamily. 99.9 8.6E-22 1.9E-26 180.4 14.5 159 268-466 2-161 (164)
23 PLN03127 Elongation factor Tu; 99.9 2.4E-21 5.1E-26 208.3 16.5 171 261-456 56-227 (447)
24 COG1160 Predicted GTPases [Gen 99.9 1.5E-21 3.3E-26 204.7 13.6 210 264-516 176-401 (444)
25 TIGR00475 selB selenocysteine- 99.9 4E-21 8.6E-26 212.8 17.1 161 267-466 1-161 (581)
26 cd01890 LepA LepA subfamily. 99.8 9.5E-21 2.1E-25 177.2 13.8 167 267-466 1-172 (179)
27 cd01888 eIF2_gamma eIF2-gamma 99.8 6.4E-21 1.4E-25 184.3 12.9 112 344-466 83-194 (203)
28 PRK10512 selenocysteinyl-tRNA- 99.8 1.1E-20 2.4E-25 210.2 16.2 160 268-467 2-162 (614)
29 cd01889 SelB_euk SelB subfamil 99.8 8E-21 1.7E-25 181.3 13.0 165 267-466 1-181 (192)
30 cd01891 TypA_BipA TypA (tyrosi 99.8 1.5E-20 3.3E-25 179.7 14.0 172 266-464 2-175 (194)
31 cd00881 GTP_translation_factor 99.8 1.4E-20 3.1E-25 176.2 13.2 173 268-466 1-182 (189)
32 TIGR01394 TypA_BipA GTP-bindin 99.8 2.2E-20 4.8E-25 206.8 13.5 165 267-458 2-168 (594)
33 TIGR03680 eif2g_arch translati 99.8 2.4E-20 5.3E-25 198.6 12.5 166 263-467 1-192 (406)
34 TIGR03594 GTPase_EngA ribosome 99.8 5.1E-20 1.1E-24 196.8 13.9 182 264-489 170-362 (429)
35 COG0050 TufB GTPases - transla 99.8 4.8E-20 1E-24 182.6 12.3 172 261-456 7-178 (394)
36 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.8E-20 8.1E-25 182.1 11.6 185 268-464 1-216 (224)
37 PTZ00327 eukaryotic translatio 99.8 3.8E-20 8.2E-25 199.1 11.8 167 262-467 30-229 (460)
38 KOG0462 Elongation factor-type 99.8 4.1E-20 9E-25 195.5 11.4 171 264-467 58-231 (650)
39 cd01885 EF2 EF2 (for archaea a 99.8 8.5E-20 1.8E-24 179.3 12.6 169 267-459 1-200 (222)
40 PRK05306 infB translation init 99.8 1.4E-19 3.1E-24 204.7 15.6 159 262-466 286-447 (787)
41 KOG0092 GTPase Rab5/YPT51 and 99.8 1.2E-19 2.5E-24 170.5 11.4 159 264-467 3-163 (200)
42 PF02421 FeoB_N: Ferrous iron 99.8 4.7E-20 1E-24 171.3 8.6 147 267-465 1-155 (156)
43 cd04160 Arfrp1 Arfrp1 subfamil 99.8 9.4E-20 2E-24 168.3 10.6 160 268-465 1-163 (167)
44 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.5E-19 5.5E-24 164.5 13.2 158 266-466 2-159 (164)
45 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.1E-19 2.4E-24 171.2 11.0 163 263-467 6-168 (205)
46 TIGR00487 IF-2 translation ini 99.8 2.8E-19 6.1E-24 197.7 15.7 158 263-466 84-245 (587)
47 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.6E-19 5.7E-24 165.0 13.1 155 268-466 2-161 (168)
48 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.8E-19 3.9E-24 173.2 12.3 159 267-466 1-163 (201)
49 PRK04000 translation initiatio 99.8 1.7E-19 3.6E-24 192.4 13.1 167 262-467 5-197 (411)
50 TIGR01393 lepA GTP-binding pro 99.8 2E-19 4.2E-24 199.6 14.0 169 265-466 2-175 (595)
51 PRK00093 GTP-binding protein D 99.8 2.5E-19 5.5E-24 192.0 14.3 180 265-489 172-362 (435)
52 cd04154 Arl2 Arl2 subfamily. 99.8 1.7E-19 3.6E-24 168.8 11.2 157 263-465 11-169 (173)
53 COG0532 InfB Translation initi 99.8 3.3E-19 7.2E-24 189.9 14.7 156 264-466 3-165 (509)
54 COG1159 Era GTPase [General fu 99.8 2.1E-19 4.6E-24 179.8 12.4 157 263-466 3-167 (298)
55 cd01886 EF-G Elongation factor 99.8 2.2E-19 4.8E-24 181.3 12.7 168 268-464 1-169 (270)
56 PRK10218 GTP-binding protein; 99.8 4.8E-19 1E-23 196.3 16.1 169 265-460 4-174 (607)
57 KOG0460 Mitochondrial translat 99.8 2.9E-19 6.3E-24 180.0 12.9 169 262-454 50-218 (449)
58 PRK05433 GTP-binding protein L 99.8 2.1E-19 4.5E-24 199.6 12.9 170 264-466 5-179 (600)
59 KOG0463 GTP-binding protein GP 99.8 6.2E-20 1.4E-24 186.4 7.9 268 195-517 62-357 (641)
60 cd04119 RJL RJL (RabJ-Like) su 99.8 5.1E-19 1.1E-23 162.4 12.8 159 267-466 1-162 (168)
61 PRK03003 GTP-binding protein D 99.8 2.4E-19 5.1E-24 194.5 12.3 207 265-516 210-432 (472)
62 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 6.3E-19 1.4E-23 165.8 13.3 161 263-467 19-181 (221)
63 cd04167 Snu114p Snu114p subfam 99.8 7.5E-19 1.6E-23 170.9 14.3 163 267-451 1-176 (213)
64 cd04136 Rap_like Rap-like subf 99.8 4.9E-19 1.1E-23 162.4 12.3 157 267-466 2-158 (163)
65 smart00173 RAS Ras subfamily o 99.8 5E-19 1.1E-23 163.0 12.3 157 267-466 1-157 (164)
66 cd04149 Arf6 Arf6 subfamily. 99.8 3.4E-19 7.3E-24 166.8 11.1 156 264-465 7-164 (168)
67 cd04121 Rab40 Rab40 subfamily. 99.8 1.2E-18 2.6E-23 167.0 15.2 158 265-466 5-162 (189)
68 KOG0394 Ras-related GTPase [Ge 99.8 1.9E-19 4.2E-24 167.7 9.2 166 263-467 6-174 (210)
69 cd04138 H_N_K_Ras_like H-Ras/N 99.8 7.5E-19 1.6E-23 160.3 13.1 156 267-466 2-157 (162)
70 cd01864 Rab19 Rab19 subfamily. 99.8 9.3E-19 2E-23 161.9 13.8 157 266-466 3-161 (165)
71 cd01895 EngA2 EngA2 subfamily. 99.8 6.8E-19 1.5E-23 161.7 12.8 158 266-466 2-170 (174)
72 cd04112 Rab26 Rab26 subfamily. 99.8 3.9E-19 8.4E-24 169.6 11.2 157 267-467 1-159 (191)
73 cd04124 RabL2 RabL2 subfamily. 99.8 1.9E-18 4E-23 160.0 15.4 152 267-466 1-153 (161)
74 cd04122 Rab14 Rab14 subfamily. 99.8 9.1E-19 2E-23 162.4 13.0 156 267-466 3-159 (166)
75 PTZ00369 Ras-like protein; Pro 99.8 1.2E-18 2.6E-23 165.9 14.0 160 264-466 3-162 (189)
76 cd04175 Rap1 Rap1 subgroup. T 99.8 8.7E-19 1.9E-23 161.8 12.7 157 267-466 2-158 (164)
77 cd04116 Rab9 Rab9 subfamily. 99.8 5.6E-19 1.2E-23 164.0 11.3 161 264-466 3-166 (170)
78 COG1160 Predicted GTPases [Gen 99.8 2.8E-19 6.1E-24 187.7 9.8 149 267-467 4-161 (444)
79 cd04106 Rab23_lke Rab23-like s 99.8 2E-18 4.4E-23 158.4 14.3 156 267-466 1-158 (162)
80 cd04127 Rab27A Rab27a subfamil 99.8 1E-18 2.2E-23 163.7 12.5 160 265-466 3-172 (180)
81 PLN03118 Rab family protein; P 99.8 1.3E-18 2.8E-23 168.6 13.3 161 264-467 12-173 (211)
82 cd01865 Rab3 Rab3 subfamily. 99.8 2.5E-18 5.3E-23 159.5 14.5 155 267-466 2-158 (165)
83 cd04150 Arf1_5_like Arf1-Arf5- 99.8 8.1E-19 1.7E-23 162.6 11.3 153 267-465 1-155 (159)
84 cd04120 Rab12 Rab12 subfamily. 99.8 1.4E-18 3.1E-23 168.3 13.4 156 267-466 1-158 (202)
85 cd04168 TetM_like Tet(M)-like 99.8 8.4E-19 1.8E-23 173.9 11.9 130 268-419 1-130 (237)
86 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.8E-18 6.1E-23 158.7 14.5 156 266-466 2-159 (166)
87 cd01861 Rab6 Rab6 subfamily. 99.8 2.8E-18 6E-23 157.3 14.3 154 267-466 1-157 (161)
88 cd01867 Rab8_Rab10_Rab13_like 99.8 1.8E-18 3.8E-23 160.8 13.0 157 266-466 3-160 (167)
89 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 2.3E-18 5E-23 161.5 13.8 157 268-466 2-160 (170)
90 CHL00189 infB translation init 99.8 6.8E-19 1.5E-23 197.7 12.1 159 263-467 241-406 (742)
91 cd04176 Rap2 Rap2 subgroup. T 99.8 1.6E-18 3.5E-23 159.6 12.5 157 267-466 2-158 (163)
92 TIGR00436 era GTP-binding prot 99.8 1.7E-18 3.7E-23 174.7 13.6 150 268-466 2-159 (270)
93 cd04157 Arl6 Arl6 subfamily. 99.8 7.9E-19 1.7E-23 160.9 9.8 153 268-465 1-158 (162)
94 PLN00223 ADP-ribosylation fact 99.8 1.4E-18 3E-23 165.0 11.6 156 264-465 15-172 (181)
95 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.5E-18 5.4E-23 161.6 13.0 158 266-466 2-159 (172)
96 smart00177 ARF ARF-like small 99.8 1.6E-18 3.5E-23 163.1 11.7 156 264-465 11-168 (175)
97 KOG1145 Mitochondrial translat 99.8 1.9E-18 4.2E-23 182.8 13.4 162 262-466 149-311 (683)
98 PRK15494 era GTPase Era; Provi 99.8 2.3E-18 4.9E-23 179.4 13.6 164 264-476 50-225 (339)
99 cd04110 Rab35 Rab35 subfamily. 99.8 4.9E-18 1.1E-22 163.3 14.9 157 266-466 6-162 (199)
100 cd01862 Rab7 Rab7 subfamily. 99.8 5E-18 1.1E-22 157.1 14.4 157 267-466 1-162 (172)
101 cd04151 Arl1 Arl1 subfamily. 99.8 1.3E-18 2.9E-23 159.9 10.4 153 268-466 1-155 (158)
102 cd04140 ARHI_like ARHI subfami 99.8 3.4E-18 7.4E-23 158.5 13.2 154 267-466 2-160 (165)
103 cd04109 Rab28 Rab28 subfamily. 99.8 3.4E-18 7.3E-23 166.4 13.6 160 267-467 1-162 (215)
104 cd01868 Rab11_like Rab11-like. 99.8 5.4E-18 1.2E-22 156.4 14.3 156 267-466 4-160 (165)
105 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2E-18 4.3E-23 162.1 11.5 155 266-466 15-171 (174)
106 cd01863 Rab18 Rab18 subfamily. 99.8 3.1E-18 6.7E-23 157.2 12.5 157 267-466 1-157 (161)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.9E-18 6.3E-23 162.6 12.6 162 265-466 2-165 (183)
108 cd01866 Rab2 Rab2 subfamily. 99.8 6.3E-18 1.4E-22 157.4 14.5 155 267-466 5-161 (168)
109 COG0481 LepA Membrane GTPase L 99.8 1.3E-18 2.8E-23 181.7 10.9 171 263-466 6-181 (603)
110 TIGR03598 GTPase_YsxC ribosome 99.8 6.4E-18 1.4E-22 159.5 14.7 152 263-460 15-179 (179)
111 cd04113 Rab4 Rab4 subfamily. 99.8 5.2E-18 1.1E-22 155.9 13.6 155 267-466 1-157 (161)
112 cd04142 RRP22 RRP22 subfamily. 99.8 3.5E-18 7.6E-23 164.8 13.1 168 267-474 1-177 (198)
113 cd00877 Ran Ran (Ras-related n 99.8 6.6E-18 1.4E-22 157.5 14.5 154 267-466 1-154 (166)
114 cd01860 Rab5_related Rab5-rela 99.8 6.7E-18 1.5E-22 155.1 14.3 157 266-466 1-158 (163)
115 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.9E-18 1.5E-22 159.1 14.4 160 267-467 2-171 (175)
116 cd04144 Ras2 Ras2 subfamily. 99.8 4.4E-18 9.6E-23 162.1 13.2 157 268-466 1-158 (190)
117 KOG0080 GTPase Rab18, small G 99.8 1.4E-18 3E-23 158.5 9.2 160 265-466 10-169 (209)
118 smart00175 RAB Rab subfamily o 99.8 7.7E-18 1.7E-22 154.4 14.0 156 267-466 1-157 (164)
119 cd04158 ARD1 ARD1 subfamily. 99.8 1.9E-18 4.2E-23 161.3 10.2 153 268-466 1-156 (169)
120 cd04118 Rab24 Rab24 subfamily. 99.8 7.7E-18 1.7E-22 160.1 14.3 160 267-466 1-161 (193)
121 cd04125 RabA_like RabA-like su 99.8 6.4E-18 1.4E-22 160.3 13.8 156 267-466 1-157 (188)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.8 4E-18 8.7E-23 156.3 11.7 153 268-466 1-157 (160)
123 TIGR00491 aIF-2 translation in 99.8 4.4E-18 9.4E-23 188.1 14.2 161 265-465 3-210 (590)
124 cd01875 RhoG RhoG subfamily. 99.8 1.3E-17 2.9E-22 159.4 15.6 163 264-466 1-172 (191)
125 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 8.6E-18 1.9E-22 160.1 14.2 163 264-466 3-175 (182)
126 cd04115 Rab33B_Rab33A Rab33B/R 99.8 6.2E-18 1.4E-22 157.7 12.8 159 266-466 2-164 (170)
127 PRK04004 translation initiatio 99.8 5.7E-18 1.2E-22 187.6 14.6 182 263-466 3-213 (586)
128 PLN03071 GTP-binding nuclear p 99.8 1.2E-17 2.7E-22 163.4 15.3 157 264-466 11-167 (219)
129 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.5E-17 3.3E-22 158.0 15.5 159 267-466 1-161 (182)
130 cd04139 RalA_RalB RalA/RalB su 99.8 6.4E-18 1.4E-22 154.7 12.3 157 267-466 1-157 (164)
131 cd00154 Rab Rab family. Rab G 99.8 1.4E-17 2.9E-22 150.2 14.0 156 267-466 1-157 (159)
132 KOG0095 GTPase Rab30, small G 99.7 2.9E-18 6.3E-23 154.7 9.0 158 266-466 7-164 (213)
133 cd04177 RSR1 RSR1 subgroup. R 99.7 1E-17 2.2E-22 155.9 13.0 158 267-466 2-159 (168)
134 cd04101 RabL4 RabL4 (Rab-like4 99.7 1.6E-17 3.4E-22 153.0 14.0 157 267-466 1-159 (164)
135 cd00157 Rho Rho (Ras homology) 99.7 1.9E-17 4.1E-22 153.1 14.6 160 267-466 1-168 (171)
136 KOG0078 GTP-binding protein SE 99.7 6.3E-18 1.4E-22 161.3 11.6 160 264-466 10-169 (207)
137 cd04135 Tc10 TC10 subfamily. 99.7 1.1E-17 2.4E-22 155.7 13.2 160 267-466 1-169 (174)
138 cd04133 Rop_like Rop subfamily 99.7 1.4E-17 3E-22 157.9 13.8 161 267-466 2-168 (176)
139 cd00878 Arf_Arl Arf (ADP-ribos 99.7 4.5E-18 9.7E-23 155.9 10.0 152 268-466 1-155 (158)
140 cd01894 EngA1 EngA1 subfamily. 99.7 5.8E-18 1.2E-22 153.6 10.6 145 270-466 1-153 (157)
141 PRK09518 bifunctional cytidyla 99.7 5.1E-18 1.1E-22 192.6 12.7 206 266-516 450-671 (712)
142 cd04132 Rho4_like Rho4-like su 99.7 1.7E-17 3.6E-22 156.9 14.0 160 267-466 1-162 (187)
143 cd04169 RF3 RF3 subfamily. Pe 99.7 1.6E-17 3.5E-22 167.6 14.7 150 266-436 2-151 (267)
144 PRK00007 elongation factor G; 99.7 5.7E-18 1.2E-22 191.5 12.8 172 264-464 8-180 (693)
145 PTZ00133 ADP-ribosylation fact 99.7 8.4E-18 1.8E-22 159.6 11.6 155 265-465 16-172 (182)
146 smart00174 RHO Rho (Ras homolo 99.7 1.8E-17 3.9E-22 154.3 13.6 158 269-467 1-168 (174)
147 cd01898 Obg Obg subfamily. Th 99.7 8.1E-18 1.7E-22 155.6 11.0 157 268-466 2-166 (170)
148 cd04126 Rab20 Rab20 subfamily. 99.7 1.1E-17 2.4E-22 164.2 12.6 161 267-467 1-186 (220)
149 cd01897 NOG NOG1 is a nucleola 99.7 2.3E-17 5.1E-22 152.4 13.9 153 267-466 1-163 (168)
150 cd04117 Rab15 Rab15 subfamily. 99.7 1.6E-17 3.5E-22 153.8 12.8 157 267-466 1-157 (161)
151 cd04131 Rnd Rnd subfamily. Th 99.7 1.9E-17 4.1E-22 157.0 13.3 162 267-467 2-172 (178)
152 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 2.6E-17 5.7E-22 162.7 14.7 165 264-467 11-184 (232)
153 TIGR00484 EF-G translation elo 99.7 9.9E-18 2.1E-22 189.6 13.2 164 264-456 8-171 (689)
154 cd04111 Rab39 Rab39 subfamily. 99.7 2E-17 4.2E-22 161.0 13.6 160 266-467 2-162 (211)
155 cd01893 Miro1 Miro1 subfamily. 99.7 3.4E-17 7.3E-22 152.2 14.3 158 267-466 1-159 (166)
156 cd04130 Wrch_1 Wrch-1 subfamil 99.7 2.4E-17 5.1E-22 154.2 13.2 160 267-466 1-169 (173)
157 COG5257 GCD11 Translation init 99.7 3.6E-18 7.7E-23 171.2 8.0 164 264-466 8-197 (415)
158 cd00879 Sar1 Sar1 subfamily. 99.7 8.8E-18 1.9E-22 159.1 10.3 155 264-465 17-185 (190)
159 cd01871 Rac1_like Rac1-like su 99.7 3E-17 6.6E-22 154.6 13.7 159 267-466 2-170 (174)
160 cd04123 Rab21 Rab21 subfamily. 99.7 2.2E-17 4.8E-22 150.5 12.3 156 267-466 1-157 (162)
161 COG1217 TypA Predicted membran 99.7 2.7E-17 5.9E-22 171.5 14.0 169 264-459 3-173 (603)
162 cd04134 Rho3 Rho3 subfamily. 99.7 5.3E-17 1.1E-21 154.7 14.9 161 267-466 1-169 (189)
163 PLN03110 Rab GTPase; Provision 99.7 3.6E-17 7.8E-22 159.6 13.8 156 265-466 11-169 (216)
164 KOG0098 GTPase Rab2, small G p 99.7 1.5E-17 3.2E-22 155.4 10.5 158 266-466 6-163 (216)
165 cd04155 Arl3 Arl3 subfamily. 99.7 1.7E-17 3.7E-22 154.3 10.9 156 264-466 12-170 (173)
166 cd01879 FeoB Ferrous iron tran 99.7 2E-17 4.2E-22 150.8 10.9 144 271-466 1-152 (158)
167 PRK00089 era GTPase Era; Revie 99.7 3.1E-17 6.8E-22 166.9 13.4 157 264-467 3-167 (292)
168 smart00178 SAR Sar1p-like memb 99.7 1.8E-17 3.8E-22 157.4 10.9 157 264-464 15-178 (184)
169 cd04146 RERG_RasL11_like RERG/ 99.7 2E-17 4.3E-22 153.1 10.8 156 268-466 1-159 (165)
170 PRK03003 GTP-binding protein D 99.7 1.4E-17 2.9E-22 180.8 11.1 150 266-467 38-195 (472)
171 cd04114 Rab30 Rab30 subfamily. 99.7 5.2E-17 1.1E-21 150.3 13.3 159 265-466 6-164 (169)
172 PRK12739 elongation factor G; 99.7 1.9E-17 4.2E-22 187.2 12.3 165 264-457 6-170 (691)
173 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.5E-17 5.4E-22 153.5 10.9 151 269-465 2-160 (164)
174 cd04143 Rhes_like Rhes_like su 99.7 4.3E-17 9.2E-22 162.7 12.7 160 267-467 1-167 (247)
175 cd04147 Ras_dva Ras-dva subfam 99.7 3.7E-17 8E-22 156.9 11.5 158 268-466 1-158 (198)
176 cd04163 Era Era subfamily. Er 99.7 1E-16 2.2E-21 145.6 13.8 155 265-466 2-164 (168)
177 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.4E-17 9.5E-22 147.6 11.4 143 267-466 2-152 (157)
178 cd04159 Arl10_like Arl10-like 99.7 4.7E-17 1E-21 147.0 11.2 152 269-466 2-156 (159)
179 TIGR00231 small_GTP small GTP- 99.7 6.3E-17 1.4E-21 144.8 11.9 155 266-465 1-158 (161)
180 PRK12299 obgE GTPase CgtA; Rev 99.7 6.1E-17 1.3E-21 168.2 13.2 160 264-466 156-323 (335)
181 cd04137 RheB Rheb (Ras Homolog 99.7 5.1E-17 1.1E-21 152.4 11.4 154 267-466 2-158 (180)
182 TIGR03594 GTPase_EngA ribosome 99.7 3.3E-17 7.2E-22 175.2 11.5 148 268-467 1-156 (429)
183 cd01892 Miro2 Miro2 subfamily. 99.7 6.8E-17 1.5E-21 151.3 12.0 160 264-466 2-161 (169)
184 PLN03108 Rab family protein; P 99.7 1.5E-16 3.2E-21 154.5 14.4 157 266-466 6-163 (210)
185 COG3276 SelB Selenocysteine-sp 99.7 8.2E-17 1.8E-21 168.0 13.2 156 268-466 2-157 (447)
186 cd00876 Ras Ras family. The R 99.7 6.8E-17 1.5E-21 147.0 11.0 154 268-466 1-156 (160)
187 cd04170 EF-G_bact Elongation f 99.7 9.2E-17 2E-21 161.7 13.0 175 268-473 1-175 (268)
188 cd01870 RhoA_like RhoA-like su 99.7 2.1E-16 4.6E-21 147.2 14.3 159 267-466 2-170 (175)
189 cd04161 Arl2l1_Arl13_like Arl2 99.7 3.7E-17 8E-22 152.6 9.1 153 268-464 1-162 (167)
190 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.2E-16 2.7E-21 157.0 13.2 161 267-468 2-173 (222)
191 TIGR02729 Obg_CgtA Obg family 99.7 8.4E-17 1.8E-21 166.9 12.5 162 264-466 155-324 (329)
192 PRK04213 GTP-binding protein; 99.7 1.1E-16 2.3E-21 153.4 12.3 158 265-466 8-187 (201)
193 PF00025 Arf: ADP-ribosylation 99.7 8.4E-17 1.8E-21 152.0 11.2 155 264-464 12-169 (175)
194 TIGR00503 prfC peptide chain r 99.7 1.5E-16 3.2E-21 174.4 14.6 154 263-437 8-161 (527)
195 PRK00093 GTP-binding protein D 99.7 8.4E-17 1.8E-21 172.6 12.4 149 267-467 2-158 (435)
196 PF00071 Ras: Ras family; Int 99.7 2.9E-16 6.4E-21 144.2 14.1 155 268-466 1-156 (162)
197 cd04148 RGK RGK subfamily. Th 99.7 1.4E-16 3E-21 156.2 12.5 154 267-466 1-158 (221)
198 cd04103 Centaurin_gamma Centau 99.7 1E-16 2.3E-21 148.8 11.0 152 267-466 1-154 (158)
199 PRK00454 engB GTP-binding prot 99.7 2.2E-16 4.7E-21 150.0 13.0 154 265-466 23-189 (196)
200 PLN00116 translation elongatio 99.7 6.7E-17 1.4E-21 186.2 11.2 170 263-456 16-217 (843)
201 smart00176 RAN Ran (Ras-relate 99.7 2.3E-16 4.9E-21 152.7 12.9 149 272-466 1-149 (200)
202 PRK00741 prfC peptide chain re 99.7 2E-16 4.4E-21 173.3 14.2 152 264-436 8-159 (526)
203 TIGR02528 EutP ethanolamine ut 99.7 4.5E-17 9.8E-22 147.0 7.3 135 268-466 2-140 (142)
204 PRK09518 bifunctional cytidyla 99.7 3.1E-16 6.6E-21 178.1 14.3 151 265-467 274-432 (712)
205 PRK12298 obgE GTPase CgtA; Rev 99.7 1.5E-16 3.3E-21 168.4 10.8 162 266-466 159-328 (390)
206 PRK12296 obgE GTPase CgtA; Rev 99.7 3.8E-16 8.3E-21 168.9 13.7 162 264-466 157-335 (500)
207 PTZ00416 elongation factor 2; 99.7 3.3E-16 7.1E-21 180.3 13.2 169 264-456 17-211 (836)
208 PRK12297 obgE GTPase CgtA; Rev 99.7 5.2E-16 1.1E-20 165.5 13.1 158 265-466 157-322 (424)
209 KOG0087 GTPase Rab11/YPT3, sma 99.7 2.2E-16 4.8E-21 150.4 9.1 160 264-466 12-171 (222)
210 cd01873 RhoBTB RhoBTB subfamil 99.7 1.3E-15 2.8E-20 146.7 14.5 116 339-466 61-191 (195)
211 KOG1144 Translation initiation 99.7 2E-16 4.4E-21 171.5 9.7 213 262-519 471-730 (1064)
212 PRK07560 elongation factor EF- 99.7 3.2E-16 6.9E-21 178.4 11.8 174 263-460 17-211 (731)
213 COG0486 ThdF Predicted GTPase 99.7 1.9E-16 4.1E-21 166.9 8.9 149 264-466 215-371 (454)
214 cd01878 HflX HflX subfamily. 99.7 7.2E-16 1.6E-20 148.1 11.8 150 265-466 40-200 (204)
215 PRK09554 feoB ferrous iron tra 99.6 8.9E-16 1.9E-20 174.6 14.3 152 264-467 1-164 (772)
216 PTZ00132 GTP-binding nuclear p 99.6 2E-15 4.2E-20 146.7 14.6 160 262-467 5-164 (215)
217 PRK05291 trmE tRNA modificatio 99.6 3.9E-16 8.5E-21 168.4 10.5 144 265-466 214-365 (449)
218 COG0480 FusA Translation elong 99.6 6.5E-16 1.4E-20 172.9 12.3 149 263-436 7-156 (697)
219 PRK15467 ethanolamine utilizat 99.6 2.6E-16 5.7E-21 146.3 7.6 136 268-466 3-142 (158)
220 TIGR03156 GTP_HflX GTP-binding 99.6 9.1E-16 2E-20 160.5 12.3 148 266-466 189-347 (351)
221 KOG1143 Predicted translation 99.6 7E-16 1.5E-20 157.1 10.6 241 195-463 91-380 (591)
222 PRK13351 elongation factor G; 99.6 1E-15 2.3E-20 173.3 12.3 134 265-420 7-140 (687)
223 cd01881 Obg_like The Obg-like 99.6 1.3E-15 2.7E-20 141.3 10.5 155 271-466 1-172 (176)
224 cd00880 Era_like Era (E. coli 99.6 2E-15 4.3E-20 135.0 11.4 151 271-466 1-159 (163)
225 KOG1532 GTPase XAB1, interacts 99.6 2.8E-16 6.2E-21 154.8 6.3 201 262-468 15-261 (366)
226 COG5258 GTPBP1 GTPase [General 99.6 8.8E-16 1.9E-20 157.0 10.0 241 195-464 47-332 (527)
227 cd04129 Rho2 Rho2 subfamily. 99.6 4.3E-15 9.4E-20 141.2 13.4 159 267-466 2-168 (187)
228 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.6E-15 5.7E-20 161.5 13.2 146 265-466 202-355 (442)
229 KOG0461 Selenocysteine-specifi 99.6 2.3E-15 5.1E-20 152.1 11.1 166 266-465 7-187 (522)
230 COG0218 Predicted GTPase [Gene 99.6 5.4E-15 1.2E-19 141.1 12.4 156 265-466 23-192 (200)
231 cd01876 YihA_EngB The YihA (En 99.6 1.5E-14 3.1E-19 131.9 14.3 152 269-466 2-166 (170)
232 KOG0086 GTPase Rab4, small G p 99.6 2E-15 4.4E-20 136.9 8.3 154 266-464 9-164 (214)
233 COG4108 PrfC Peptide chain rel 99.6 3.5E-15 7.5E-20 155.1 9.7 138 264-419 10-147 (528)
234 KOG0073 GTP-binding ADP-ribosy 99.6 7.1E-15 1.5E-19 135.0 10.5 156 263-463 13-170 (185)
235 KOG0079 GTP-binding protein H- 99.6 3.3E-15 7.1E-20 134.9 8.1 158 266-467 8-165 (198)
236 cd00882 Ras_like_GTPase Ras-li 99.6 1.1E-14 2.3E-19 128.3 10.9 151 271-465 1-154 (157)
237 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.3E-14 5E-19 139.0 14.2 158 267-462 1-181 (202)
238 PF10662 PduV-EutP: Ethanolami 99.6 3.8E-15 8.2E-20 136.1 8.2 134 267-464 2-139 (143)
239 KOG0093 GTPase Rab3, small G p 99.6 4.7E-15 1E-19 133.8 8.4 157 267-466 22-178 (193)
240 PRK12740 elongation factor G; 99.6 6.4E-15 1.4E-19 166.4 11.3 126 272-419 1-126 (668)
241 PRK11058 GTPase HflX; Provisio 99.6 6.8E-15 1.5E-19 157.5 10.7 152 267-467 198-358 (426)
242 TIGR00490 aEF-2 translation el 99.6 8.5E-15 1.8E-19 166.5 10.2 132 264-419 17-152 (720)
243 COG2229 Predicted GTPase [Gene 99.6 4E-14 8.7E-19 132.7 12.6 165 263-465 7-172 (187)
244 KOG1423 Ras-like GTPase ERA [C 99.6 1.2E-14 2.7E-19 145.3 9.6 185 261-484 67-288 (379)
245 COG0370 FeoB Fe2+ transport sy 99.6 1.9E-14 4.2E-19 157.5 12.0 150 265-466 2-159 (653)
246 KOG0070 GTP-binding ADP-ribosy 99.5 1.9E-14 4.2E-19 134.9 9.8 156 263-464 14-171 (181)
247 TIGR00437 feoB ferrous iron tr 99.5 2.1E-14 4.5E-19 159.7 11.9 144 273-468 1-152 (591)
248 KOG1489 Predicted GTP-binding 99.5 1.7E-14 3.7E-19 145.1 9.6 161 264-466 194-362 (366)
249 cd04104 p47_IIGP_like p47 (47- 99.5 7.1E-14 1.5E-18 134.5 13.5 160 266-465 1-178 (197)
250 PRK09866 hypothetical protein; 99.5 5.3E-14 1.2E-18 153.7 13.3 114 343-466 229-348 (741)
251 KOG0091 GTPase Rab39, small G 99.5 2.4E-14 5.1E-19 131.4 8.8 159 266-466 8-168 (213)
252 cd01896 DRG The developmentall 99.5 1.3E-13 2.8E-18 136.5 12.8 82 268-380 2-90 (233)
253 PLN00023 GTP-binding protein; 99.5 1.6E-13 3.5E-18 141.0 13.6 148 263-442 18-190 (334)
254 PF01926 MMR_HSR1: 50S ribosom 99.5 9.2E-14 2E-18 121.8 9.9 107 268-414 1-116 (116)
255 PRK14845 translation initiatio 99.5 1.5E-13 3.2E-18 159.4 13.2 112 345-465 527-667 (1049)
256 cd04105 SR_beta Signal recogni 99.5 3.1E-13 6.7E-18 130.9 12.8 116 268-420 2-124 (203)
257 KOG0083 GTPase Rab26/Rab37, sm 99.5 2.5E-14 5.3E-19 127.2 4.6 154 271-466 2-155 (192)
258 KOG0097 GTPase Rab14, small G 99.5 2E-13 4.3E-18 122.5 10.3 156 266-466 11-168 (215)
259 KOG0395 Ras-related GTPase [Ge 99.5 2.4E-13 5.1E-18 131.3 10.9 159 265-466 2-160 (196)
260 PF08477 Miro: Miro-like prote 99.5 1.9E-13 4.2E-18 119.5 9.0 119 268-416 1-119 (119)
261 COG1100 GTPase SAR1 and relate 99.5 6E-13 1.3E-17 128.7 13.1 164 265-466 4-180 (219)
262 KOG0052 Translation elongation 99.5 6.2E-14 1.3E-18 145.0 6.3 178 263-444 4-183 (391)
263 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.5E-12 3.2E-17 128.2 15.3 149 263-459 36-184 (225)
264 KOG0075 GTP-binding ADP-ribosy 99.4 3E-13 6.6E-18 122.2 9.1 152 266-463 20-174 (186)
265 KOG0467 Translation elongation 99.4 6.1E-13 1.3E-17 145.7 13.0 175 263-461 6-207 (887)
266 KOG0088 GTPase Rab21, small G 99.4 1.6E-13 3.4E-18 125.4 7.0 158 265-466 12-170 (218)
267 COG0536 Obg Predicted GTPase [ 99.4 4.1E-13 8.8E-18 136.7 10.1 163 266-466 159-328 (369)
268 KOG0071 GTP-binding ADP-ribosy 99.4 9.3E-13 2E-17 118.2 10.1 154 265-464 16-171 (180)
269 COG2262 HflX GTPases [General 99.4 6.3E-13 1.4E-17 138.4 9.8 151 264-466 190-351 (411)
270 KOG1191 Mitochondrial GTPase [ 99.4 3.6E-13 7.9E-18 142.2 6.5 160 263-466 265-445 (531)
271 KOG0081 GTPase Rab27, small G 99.4 3.3E-13 7.2E-18 123.3 5.0 108 344-464 67-174 (219)
272 PTZ00099 rab6; Provisional 99.4 2.9E-12 6.3E-17 121.5 11.7 124 328-466 13-137 (176)
273 KOG0464 Elongation factor G [T 99.4 2.2E-13 4.7E-18 140.4 3.8 135 264-420 35-169 (753)
274 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 2.2E-12 4.7E-17 123.8 10.0 155 267-466 1-179 (196)
275 cd01850 CDC_Septin CDC/Septin. 99.4 1.2E-11 2.6E-16 125.6 15.5 144 266-441 4-177 (276)
276 COG1084 Predicted GTPase [Gene 99.4 6E-12 1.3E-16 127.7 12.7 156 263-464 165-329 (346)
277 KOG0393 Ras-related small GTPa 99.3 4.6E-12 9.9E-17 121.5 10.6 163 265-468 3-176 (198)
278 KOG0465 Mitochondrial elongati 99.3 1.3E-12 2.9E-17 140.3 7.1 137 264-422 37-173 (721)
279 KOG0076 GTP-binding ADP-ribosy 99.3 1.8E-12 4E-17 120.3 7.0 166 263-463 14-179 (197)
280 PF09439 SRPRB: Signal recogni 99.3 5.2E-12 1.1E-16 120.1 10.2 134 266-438 3-143 (181)
281 KOG0072 GTP-binding ADP-ribosy 99.3 2.9E-12 6.3E-17 115.5 6.1 154 265-464 17-172 (182)
282 KOG4252 GTP-binding protein [S 99.3 8E-13 1.7E-17 123.0 2.0 160 262-465 16-175 (246)
283 COG3596 Predicted GTPase [Gene 99.3 7.5E-12 1.6E-16 124.5 8.8 159 263-466 36-217 (296)
284 KOG0074 GTP-binding ADP-ribosy 99.3 1.3E-11 2.9E-16 111.0 9.1 153 264-463 15-171 (185)
285 PRK09435 membrane ATPase/prote 99.3 3.2E-12 7E-17 132.5 5.8 109 341-467 146-256 (332)
286 COG1163 DRG Predicted GTPase [ 99.3 3E-11 6.4E-16 122.4 11.7 84 266-380 63-153 (365)
287 PF03029 ATP_bind_1: Conserved 99.3 4.1E-13 8.8E-18 133.4 -1.8 189 271-466 1-232 (238)
288 KOG0468 U5 snRNP-specific prot 99.3 1.3E-11 2.8E-16 133.4 9.4 133 263-418 125-262 (971)
289 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 5.4E-11 1.2E-15 117.6 12.6 162 268-466 1-171 (232)
290 KOG0466 Translation initiation 99.2 4.5E-12 9.8E-17 126.7 4.5 189 262-466 34-236 (466)
291 KOG0090 Signal recognition par 99.2 8.7E-11 1.9E-15 112.7 10.8 157 264-462 36-230 (238)
292 cd01899 Ygr210 Ygr210 subfamil 99.2 2.4E-10 5.2E-15 118.2 12.4 37 343-379 68-111 (318)
293 PF05049 IIGP: Interferon-indu 99.1 1.1E-10 2.5E-15 122.2 9.2 151 264-455 33-200 (376)
294 cd01853 Toc34_like Toc34-like 99.1 8.6E-10 1.9E-14 110.4 14.2 121 262-419 27-163 (249)
295 PRK13768 GTPase; Provisional 99.1 1.1E-10 2.5E-15 116.9 7.8 115 343-466 96-242 (253)
296 PRK09602 translation-associate 99.1 6.9E-10 1.5E-14 118.1 12.7 35 344-378 72-113 (396)
297 PF00350 Dynamin_N: Dynamin fa 99.1 1.7E-10 3.8E-15 107.0 6.6 66 342-415 99-168 (168)
298 TIGR00991 3a0901s02IAP34 GTP-b 99.1 1.4E-09 3E-14 111.4 13.1 122 261-419 33-167 (313)
299 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 6.5E-10 1.4E-14 104.8 9.5 155 264-464 8-162 (216)
300 TIGR00073 hypB hydrogenase acc 99.0 2.3E-10 5E-15 111.0 5.3 101 343-466 102-202 (207)
301 KOG1490 GTP-binding protein CR 99.0 5.5E-10 1.2E-14 118.3 7.2 162 263-465 165-335 (620)
302 PF04548 AIG1: AIG1 family; I 99.0 2.4E-09 5.3E-14 104.4 11.3 135 267-441 1-155 (212)
303 TIGR00750 lao LAO/AO transport 99.0 1.4E-09 2.9E-14 111.8 9.5 110 340-467 123-234 (300)
304 KOG1707 Predicted Ras related/ 99.0 8.9E-10 1.9E-14 118.7 8.3 157 262-465 5-169 (625)
305 COG4917 EutP Ethanolamine util 99.0 4.8E-10 1E-14 99.3 4.9 134 267-464 2-139 (148)
306 PTZ00258 GTP-binding protein; 99.0 4.8E-09 1E-13 111.0 13.4 84 264-378 19-126 (390)
307 TIGR00101 ureG urease accessor 99.0 1.5E-09 3.3E-14 105.1 8.7 101 343-466 91-191 (199)
308 KOG1673 Ras GTPases [General f 99.0 3.6E-09 7.7E-14 96.9 10.4 160 264-465 18-180 (205)
309 PF03308 ArgK: ArgK protein; 99.0 1.2E-09 2.7E-14 108.5 8.0 182 264-468 27-227 (266)
310 KOG0469 Elongation factor 2 [T 99.0 3.8E-09 8.2E-14 111.7 11.5 132 263-418 16-163 (842)
311 COG5192 BMS1 GTP-binding prote 98.9 1.3E-08 2.8E-13 108.8 14.7 148 261-456 64-211 (1077)
312 smart00053 DYNc Dynamin, GTPas 98.9 4.2E-09 9.2E-14 104.8 9.5 69 343-420 124-207 (240)
313 COG1703 ArgK Putative periplas 98.9 1.1E-09 2.3E-14 110.4 5.1 190 256-467 41-250 (323)
314 KOG3886 GTP-binding protein [S 98.9 2.3E-09 5.1E-14 104.0 6.4 153 266-456 4-164 (295)
315 PF00735 Septin: Septin; Inte 98.9 1.4E-08 3E-13 103.5 12.1 145 266-442 4-177 (281)
316 PRK09601 GTP-binding protein Y 98.9 1.5E-08 3.2E-13 106.3 12.3 88 267-378 3-107 (364)
317 KOG0077 Vesicle coat complex C 98.9 1.1E-08 2.4E-13 94.7 9.5 159 264-463 18-185 (193)
318 COG0378 HypB Ni2+-binding GTPa 98.8 1.7E-09 3.7E-14 103.1 3.4 98 344-464 97-194 (202)
319 TIGR02836 spore_IV_A stage IV 98.8 3E-08 6.5E-13 104.4 12.6 136 264-417 15-192 (492)
320 KOG4423 GTP-binding protein-li 98.8 1.4E-10 2.9E-15 109.0 -4.3 158 266-465 25-188 (229)
321 PRK10463 hydrogenase nickel in 98.8 1.2E-08 2.5E-13 103.9 8.1 100 342-464 183-282 (290)
322 KOG3883 Ras family small GTPas 98.8 5E-08 1.1E-12 89.2 11.1 158 264-465 7-169 (198)
323 KOG2486 Predicted GTPase [Gene 98.8 1.5E-08 3.3E-13 101.0 7.1 160 263-464 133-309 (320)
324 KOG0410 Predicted GTP binding 98.7 1.4E-08 3E-13 103.0 5.5 143 266-465 178-335 (410)
325 TIGR00993 3a0901s04IAP86 chlor 98.7 8.5E-08 1.9E-12 106.0 11.6 121 266-419 118-250 (763)
326 KOG0448 Mitofusin 1 GTPase, in 98.6 1.1E-07 2.5E-12 104.2 9.7 102 344-455 206-310 (749)
327 COG0012 Predicted GTPase, prob 98.6 2.3E-07 5E-12 96.5 11.2 89 266-378 2-108 (372)
328 cd01900 YchF YchF subfamily. 98.5 1.4E-07 3E-12 95.8 5.2 34 345-378 63-103 (274)
329 KOG1547 Septin CDC10 and relat 98.5 1.1E-06 2.4E-11 86.1 10.9 142 266-441 46-218 (336)
330 KOG1486 GTP-binding protein DR 98.5 1.5E-06 3.3E-11 85.7 11.8 128 207-380 18-152 (364)
331 COG5019 CDC3 Septin family pro 98.5 1.9E-06 4.1E-11 89.3 13.1 146 263-441 20-196 (373)
332 cd01858 NGP_1 NGP-1. Autoanti 98.4 5.7E-07 1.2E-11 83.2 6.5 56 266-354 102-157 (157)
333 KOG1487 GTP-binding protein DR 98.4 9E-07 1.9E-11 87.6 8.1 84 266-380 59-149 (358)
334 PRK10416 signal recognition pa 98.3 3.8E-06 8.2E-11 87.2 11.5 96 342-463 195-302 (318)
335 KOG2655 Septin family protein 98.3 6.2E-06 1.3E-10 86.0 12.5 145 265-442 20-193 (366)
336 cd04178 Nucleostemin_like Nucl 98.3 1.1E-06 2.4E-11 83.3 5.8 58 264-354 115-172 (172)
337 PRK14974 cell division protein 98.2 5.1E-06 1.1E-10 86.7 10.4 96 342-463 221-322 (336)
338 TIGR00157 ribosome small subun 98.2 5.3E-06 1.2E-10 82.9 9.0 96 355-467 24-119 (245)
339 cd01859 MJ1464 MJ1464. This f 98.2 2.3E-06 5E-11 78.8 5.6 86 362-467 7-92 (156)
340 cd01858 NGP_1 NGP-1. Autoanti 98.2 2.5E-06 5.4E-11 79.0 5.6 88 361-466 2-90 (157)
341 TIGR00064 ftsY signal recognit 98.2 1.3E-05 2.8E-10 81.4 11.1 95 342-462 153-259 (272)
342 PF00448 SRP54: SRP54-type pro 98.2 3.9E-06 8.4E-11 81.2 6.9 67 342-419 82-154 (196)
343 cd01851 GBP Guanylate-binding 98.1 2.6E-05 5.7E-10 76.9 12.5 92 264-380 5-104 (224)
344 cd01855 YqeH YqeH. YqeH is an 98.1 4.2E-06 9.1E-11 79.8 6.6 97 357-467 24-121 (190)
345 KOG1954 Endocytosis/signaling 98.1 1.9E-05 4.2E-10 81.7 11.3 136 264-419 56-225 (532)
346 KOG3905 Dynein light intermedi 98.1 2.2E-05 4.9E-10 80.0 11.4 55 407-466 224-285 (473)
347 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 7.3E-06 1.6E-10 74.6 7.1 80 359-458 3-84 (141)
348 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 4.2E-06 9.1E-11 76.1 5.4 22 268-289 85-106 (141)
349 COG1161 Predicted GTPases [Gen 98.1 4.5E-06 9.7E-11 86.8 5.9 57 265-354 131-187 (322)
350 cd01855 YqeH YqeH. YqeH is an 98.1 4.7E-06 1E-10 79.5 5.5 63 267-354 128-190 (190)
351 cd01849 YlqF_related_GTPase Yl 98.0 5.8E-06 1.3E-10 76.4 5.4 57 265-354 99-155 (155)
352 KOG1491 Predicted GTP-binding 98.0 3.4E-05 7.3E-10 79.3 11.0 97 265-378 19-125 (391)
353 PF00641 zf-RanBP: Zn-finger i 98.0 1.9E-06 4.1E-11 58.0 1.1 29 48-76 2-30 (30)
354 PRK09563 rbgA GTPase YlqF; Rev 98.0 1E-05 2.2E-10 82.8 6.8 57 265-354 120-176 (287)
355 TIGR01425 SRP54_euk signal rec 98.0 2.8E-05 6.1E-10 83.5 10.1 66 342-418 181-252 (429)
356 cd01849 YlqF_related_GTPase Yl 98.0 1.4E-05 3E-10 73.9 6.7 79 369-466 1-80 (155)
357 TIGR03596 GTPase_YlqF ribosome 98.0 1E-05 2.3E-10 82.1 6.2 57 265-354 117-173 (276)
358 PRK00098 GTPase RsgA; Reviewed 98.0 3.4E-05 7.3E-10 79.4 10.0 85 365-466 78-162 (298)
359 cd01856 YlqF YlqF. Proteins o 98.0 1.4E-05 3.1E-10 75.1 6.4 57 265-354 114-170 (171)
360 PF03193 DUF258: Protein of un 98.0 4.2E-06 9.2E-11 78.4 2.7 23 267-289 36-58 (161)
361 PRK12288 GTPase RsgA; Reviewed 98.0 1.2E-05 2.5E-10 84.5 6.2 24 268-291 207-230 (347)
362 PRK11889 flhF flagellar biosyn 98.0 1.9E-05 4.1E-10 83.6 7.7 66 343-419 320-391 (436)
363 PF02492 cobW: CobW/HypB/UreG, 97.9 1.5E-05 3.3E-10 75.6 6.2 82 343-435 84-170 (178)
364 TIGR03597 GTPase_YqeH ribosome 97.9 1.5E-05 3.3E-10 84.1 6.6 100 354-467 50-149 (360)
365 cd01856 YlqF YlqF. Proteins o 97.9 7.3E-06 1.6E-10 77.0 3.7 93 352-466 3-96 (171)
366 PRK12289 GTPase RsgA; Reviewed 97.9 3.3E-05 7.2E-10 81.2 8.6 87 363-467 85-171 (352)
367 PF05783 DLIC: Dynein light in 97.9 0.0002 4.2E-09 78.1 14.6 53 407-464 198-257 (472)
368 cd03112 CobW_like The function 97.9 7.2E-06 1.6E-10 76.5 3.1 22 268-289 2-23 (158)
369 COG3640 CooC CO dehydrogenase 97.9 3.7E-05 7.9E-10 75.7 8.0 66 342-418 132-198 (255)
370 KOG0447 Dynamin-like GTP bindi 97.9 3.6E-05 7.7E-10 82.9 8.4 162 264-432 306-506 (980)
371 KOG0082 G-protein alpha subuni 97.9 4.3E-05 9.3E-10 79.8 8.8 136 331-466 182-339 (354)
372 KOG1534 Putative transcription 97.9 9.9E-06 2.2E-10 78.2 3.3 150 266-419 3-178 (273)
373 PRK12289 GTPase RsgA; Reviewed 97.8 1.8E-05 3.9E-10 83.3 5.3 23 268-290 174-196 (352)
374 cd03115 SRP The signal recogni 97.8 0.00021 4.5E-09 67.0 11.6 67 342-419 81-153 (173)
375 TIGR00157 ribosome small subun 97.8 2.5E-05 5.3E-10 78.2 5.5 23 267-289 121-143 (245)
376 cd03110 Fer4_NifH_child This p 97.8 0.0002 4.3E-09 67.5 11.2 82 342-441 91-172 (179)
377 cd01859 MJ1464 MJ1464. This f 97.8 3.8E-05 8.3E-10 70.7 6.1 23 266-288 101-123 (156)
378 TIGR03596 GTPase_YlqF ribosome 97.8 1.9E-05 4.1E-10 80.3 4.4 93 352-466 5-98 (276)
379 COG0523 Putative GTPases (G3E 97.8 0.00023 5E-09 74.0 12.1 93 343-453 84-184 (323)
380 TIGR00092 GTP-binding protein 97.7 4.7E-05 1E-09 80.2 6.3 89 267-378 3-108 (368)
381 COG1162 Predicted GTPases [Gen 97.7 4.6E-05 1E-09 77.8 5.8 23 267-289 165-187 (301)
382 cd03114 ArgK-like The function 97.7 5.6E-05 1.2E-09 69.8 5.8 35 342-379 90-124 (148)
383 PRK13796 GTPase YqeH; Provisio 97.7 5E-05 1.1E-09 80.3 5.8 61 267-355 161-221 (365)
384 PRK00771 signal recognition pa 97.7 0.00014 3.1E-09 78.5 8.9 25 265-289 94-118 (437)
385 TIGR03597 GTPase_YqeH ribosome 97.7 6E-05 1.3E-09 79.6 5.9 115 267-418 155-279 (360)
386 PRK09563 rbgA GTPase YlqF; Rev 97.7 3.7E-05 8E-10 78.6 4.1 94 351-466 7-101 (287)
387 COG1419 FlhF Flagellar GTP-bin 97.6 0.00012 2.6E-09 77.5 7.7 132 265-419 202-352 (407)
388 PRK14722 flhF flagellar biosyn 97.6 3.9E-05 8.4E-10 81.1 4.0 24 266-289 137-160 (374)
389 smart00547 ZnF_RBZ Zinc finger 97.6 1.9E-05 4.1E-10 51.2 1.0 25 49-73 1-25 (26)
390 smart00010 small_GTPase Small 97.6 9.9E-05 2.1E-09 64.1 5.6 21 267-287 1-21 (124)
391 PF09547 Spore_IV_A: Stage IV 97.6 0.0012 2.6E-08 70.2 14.3 135 265-416 16-191 (492)
392 PRK12726 flagellar biosynthesi 97.6 9.8E-05 2.1E-09 78.0 6.1 25 265-289 205-229 (407)
393 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00012 2.5E-09 75.0 6.2 24 267-290 162-185 (287)
394 cd00066 G-alpha G protein alph 97.6 0.0003 6.5E-09 73.0 9.3 134 333-466 150-306 (317)
395 PRK12727 flagellar biosynthesi 97.5 0.00048 1E-08 75.6 10.9 25 265-289 349-373 (559)
396 PRK10867 signal recognition pa 97.5 0.00079 1.7E-08 72.7 11.8 24 265-288 99-122 (433)
397 PRK13796 GTPase YqeH; Provisio 97.5 0.00026 5.6E-09 75.0 7.8 93 361-467 62-155 (365)
398 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00029 6.3E-09 72.1 8.0 85 365-467 76-160 (287)
399 PRK14721 flhF flagellar biosyn 97.5 0.00025 5.5E-09 76.1 7.7 68 341-419 267-340 (420)
400 PRK12724 flagellar biosynthesi 97.5 5.8E-05 1.3E-09 80.7 2.5 67 342-419 298-373 (432)
401 PRK05703 flhF flagellar biosyn 97.5 9.7E-05 2.1E-09 79.7 4.1 67 342-419 298-371 (424)
402 TIGR00959 ffh signal recogniti 97.4 0.00049 1.1E-08 74.2 9.4 66 342-418 181-252 (428)
403 TIGR02475 CobW cobalamin biosy 97.4 0.00095 2.1E-08 70.1 11.0 23 267-289 5-27 (341)
404 smart00275 G_alpha G protein a 97.4 0.00072 1.6E-08 71.0 10.1 135 332-466 172-329 (342)
405 PRK11537 putative GTP-binding 97.4 0.00099 2.2E-08 69.3 10.8 24 266-289 4-27 (318)
406 PRK00098 GTPase RsgA; Reviewed 97.4 0.00022 4.7E-09 73.4 5.8 24 267-290 165-188 (298)
407 KOG3887 Predicted small GTPase 97.4 0.00065 1.4E-08 67.1 8.4 162 267-466 28-197 (347)
408 PRK01889 GTPase RsgA; Reviewed 97.4 0.00062 1.3E-08 71.9 8.9 83 365-466 110-192 (356)
409 KOG1707 Predicted Ras related/ 97.4 0.0013 2.8E-08 71.9 11.3 157 263-467 422-579 (625)
410 PRK12723 flagellar biosynthesi 97.3 0.00082 1.8E-08 71.6 9.2 25 265-289 173-197 (388)
411 PRK06731 flhF flagellar biosyn 97.3 0.00069 1.5E-08 68.8 8.0 66 343-419 154-225 (270)
412 PRK12288 GTPase RsgA; Reviewed 97.3 0.00078 1.7E-08 70.9 8.6 86 365-466 118-203 (347)
413 KOG1424 Predicted GTP-binding 97.3 0.00023 5E-09 76.7 4.7 61 266-359 314-376 (562)
414 KOG2485 Conserved ATP/GTP bind 97.3 0.00032 7E-09 71.6 5.0 65 264-353 141-205 (335)
415 KOG1533 Predicted GTPase [Gene 97.2 0.00052 1.1E-08 67.6 6.0 74 342-419 95-177 (290)
416 COG0552 FtsY Signal recognitio 97.2 0.00074 1.6E-08 69.8 6.9 28 263-290 136-163 (340)
417 cd02038 FleN-like FleN is a me 97.2 0.0025 5.3E-08 58.0 9.4 81 344-438 45-126 (139)
418 cd02036 MinD Bacterial cell di 97.2 0.0035 7.6E-08 58.3 10.5 64 345-418 64-127 (179)
419 PRK14723 flhF flagellar biosyn 97.1 0.00091 2E-08 76.4 7.5 25 266-290 185-209 (767)
420 PRK06995 flhF flagellar biosyn 97.1 0.00019 4.2E-09 78.2 1.5 24 266-289 256-279 (484)
421 COG0541 Ffh Signal recognition 97.0 0.0015 3.2E-08 69.6 7.4 138 263-418 97-252 (451)
422 cd03111 CpaE_like This protein 97.0 0.004 8.7E-08 54.0 9.0 60 345-414 44-106 (106)
423 KOG0780 Signal recognition par 97.0 0.002 4.4E-08 67.5 7.5 129 263-418 98-253 (483)
424 KOG2743 Cobalamin synthesis pr 96.9 0.0033 7.2E-08 64.0 8.4 86 343-435 145-239 (391)
425 KOG2484 GTPase [General functi 96.9 0.00064 1.4E-08 71.4 2.9 59 263-354 249-307 (435)
426 KOG3859 Septins (P-loop GTPase 96.9 0.0047 1E-07 62.3 8.8 138 266-441 42-210 (406)
427 TIGR03348 VI_IcmF type VI secr 96.6 0.0034 7.3E-08 75.9 7.3 18 269-286 114-131 (1169)
428 PF00503 G-alpha: G-protein al 96.6 0.0058 1.3E-07 65.1 7.8 132 332-466 223-385 (389)
429 COG1162 Predicted GTPases [Gen 96.6 0.0091 2E-07 61.3 8.7 84 366-465 78-161 (301)
430 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.017 3.7E-07 47.3 8.7 69 269-380 2-71 (99)
431 KOG0781 Signal recognition par 96.5 0.012 2.6E-07 63.4 9.2 73 341-419 464-544 (587)
432 PRK08099 bifunctional DNA-bind 96.5 0.0092 2E-07 64.0 8.5 43 251-293 204-246 (399)
433 KOG4181 Uncharacterized conser 96.4 0.02 4.4E-07 59.4 9.9 24 266-289 188-211 (491)
434 KOG2423 Nucleolar GTPase [Gene 96.2 0.0016 3.4E-08 68.4 1.0 27 263-289 304-330 (572)
435 cd04178 Nucleostemin_like Nucl 96.2 0.006 1.3E-07 57.8 4.9 55 369-434 1-57 (172)
436 KOG1424 Predicted GTP-binding 96.2 0.0074 1.6E-07 65.4 5.6 81 356-455 163-244 (562)
437 CHL00175 minD septum-site dete 96.1 0.046 9.9E-07 55.3 11.0 65 343-417 126-190 (281)
438 PRK13695 putative NTPase; Prov 96.1 0.02 4.3E-07 53.8 7.6 22 268-289 2-23 (174)
439 COG3523 IcmF Type VI protein s 96.1 0.013 2.8E-07 69.9 7.4 18 269-286 128-145 (1188)
440 cd02042 ParA ParA and ParB of 96.0 0.03 6.4E-07 47.7 7.8 35 344-380 40-74 (104)
441 PRK01889 GTPase RsgA; Reviewed 96.0 0.0067 1.4E-07 64.1 4.3 25 267-291 196-220 (356)
442 KOG4477 RING1 interactor RYBP 95.8 0.0054 1.2E-07 57.7 2.2 30 46-75 20-49 (228)
443 KOG2484 GTPase [General functi 95.7 0.018 3.9E-07 60.8 5.9 72 355-436 134-206 (435)
444 KOG0705 GTPase-activating prot 95.7 0.0086 1.9E-07 65.2 3.5 163 252-466 20-184 (749)
445 PF06858 NOG1: Nucleolar GTP-b 95.3 0.054 1.2E-06 42.1 5.9 47 366-416 12-58 (58)
446 PF13207 AAA_17: AAA domain; P 95.3 0.012 2.5E-07 51.4 2.5 22 268-289 1-22 (121)
447 cd02032 Bchl_like This family 95.2 0.095 2.1E-06 52.6 9.2 70 343-417 115-184 (267)
448 COG1618 Predicted nucleotide k 95.1 0.15 3.3E-06 48.0 9.4 25 265-289 4-28 (179)
449 KOG0066 eIF2-interacting prote 95.1 0.078 1.7E-06 56.8 8.4 39 252-290 599-637 (807)
450 cd02117 NifH_like This family 95.1 0.16 3.4E-06 49.3 10.1 67 342-417 115-187 (212)
451 PF13671 AAA_33: AAA domain; P 94.8 0.019 4.2E-07 51.4 2.5 23 269-291 2-24 (143)
452 PF00005 ABC_tran: ABC transpo 94.7 0.021 4.6E-07 50.9 2.5 22 268-289 13-34 (137)
453 PRK07261 topology modulation p 94.6 0.021 4.5E-07 53.9 2.5 21 268-288 2-22 (171)
454 PRK08233 hypothetical protein; 94.6 0.027 5.8E-07 52.6 3.1 26 265-290 2-27 (182)
455 PRK08118 topology modulation p 94.5 0.025 5.5E-07 53.2 2.7 24 267-290 2-25 (167)
456 PRK14738 gmk guanylate kinase; 94.5 0.034 7.5E-07 54.0 3.7 26 263-288 10-35 (206)
457 cd02040 NifH NifH gene encodes 94.4 0.15 3.2E-06 50.9 8.2 38 342-379 115-153 (270)
458 TIGR01281 DPOR_bchL light-inde 94.4 0.2 4.3E-06 50.3 9.1 71 342-417 114-184 (268)
459 cd03238 ABC_UvrA The excision 94.4 0.027 5.8E-07 53.6 2.6 24 265-288 20-43 (176)
460 PF13555 AAA_29: P-loop contai 94.4 0.029 6.3E-07 44.3 2.4 21 268-288 25-45 (62)
461 PF13521 AAA_28: AAA domain; P 94.4 0.019 4.2E-07 53.2 1.6 22 268-289 1-22 (163)
462 PRK13849 putative crown gall t 94.3 0.14 3.1E-06 50.8 7.6 68 342-416 82-151 (231)
463 KOG0099 G protein subunit Galp 94.3 0.12 2.6E-06 52.1 6.8 86 333-418 191-282 (379)
464 COG0563 Adk Adenylate kinase a 94.3 0.029 6.4E-07 53.5 2.6 23 268-290 2-24 (178)
465 cd02019 NK Nucleoside/nucleoti 94.3 0.031 6.7E-07 44.6 2.3 20 269-288 2-21 (69)
466 PRK14530 adenylate kinase; Pro 94.2 0.032 7E-07 54.3 2.9 26 266-291 3-28 (215)
467 COG1116 TauB ABC-type nitrate/ 94.2 0.028 6E-07 56.2 2.3 22 269-290 32-53 (248)
468 COG3840 ThiQ ABC-type thiamine 94.2 0.032 6.9E-07 53.6 2.5 23 267-289 26-48 (231)
469 smart00382 AAA ATPases associa 94.1 0.038 8.3E-07 47.5 2.8 23 267-289 3-25 (148)
470 PRK05480 uridine/cytidine kina 94.1 0.037 8.1E-07 53.5 2.9 26 265-290 5-30 (209)
471 COG1136 SalX ABC-type antimicr 94.1 0.03 6.5E-07 55.4 2.3 21 269-289 34-54 (226)
472 PRK10751 molybdopterin-guanine 94.1 0.039 8.5E-07 52.5 2.9 26 264-289 4-29 (173)
473 TIGR00235 udk uridine kinase. 93.9 0.044 9.6E-07 53.0 3.1 26 265-290 5-30 (207)
474 PRK10078 ribose 1,5-bisphospho 93.9 0.041 8.8E-07 52.4 2.7 23 268-290 4-26 (186)
475 PF13238 AAA_18: AAA domain; P 93.8 0.039 8.5E-07 48.0 2.3 21 269-289 1-21 (129)
476 COG1161 Predicted GTPases [Gen 93.7 0.089 1.9E-06 54.9 5.1 96 348-464 14-110 (322)
477 CHL00072 chlL photochlorophyll 93.6 0.36 7.7E-06 49.6 9.3 36 343-379 115-150 (290)
478 COG1134 TagH ABC-type polysacc 93.6 0.046 1E-06 54.5 2.6 41 249-289 36-76 (249)
479 cd01130 VirB11-like_ATPase Typ 93.6 0.047 1E-06 52.0 2.6 23 266-288 25-47 (186)
480 TIGR02322 phosphon_PhnN phosph 93.6 0.045 9.7E-07 51.4 2.4 23 268-290 3-25 (179)
481 PRK13230 nitrogenase reductase 93.6 0.32 7E-06 49.2 8.8 38 343-380 116-154 (279)
482 PF03205 MobB: Molybdopterin g 93.5 0.051 1.1E-06 49.8 2.6 22 268-289 2-23 (140)
483 PRK06217 hypothetical protein; 93.5 0.052 1.1E-06 51.5 2.7 24 267-290 2-25 (183)
484 PRK05057 aroK shikimate kinase 93.5 0.057 1.2E-06 51.0 2.9 26 266-291 4-29 (172)
485 cd03225 ABC_cobalt_CbiO_domain 93.5 0.05 1.1E-06 52.5 2.6 23 267-289 28-50 (211)
486 KOG0446 Vacuolar sorting prote 93.4 0.024 5.1E-07 64.5 0.3 70 342-420 130-214 (657)
487 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.053 1.1E-06 52.6 2.6 24 267-290 31-54 (218)
488 cd03261 ABC_Org_Solvent_Resist 93.3 0.055 1.2E-06 53.2 2.6 24 267-290 27-50 (235)
489 TIGR00960 3a0501s02 Type II (G 93.3 0.055 1.2E-06 52.4 2.5 24 267-290 30-53 (216)
490 cd03222 ABC_RNaseL_inhibitor T 93.3 0.053 1.1E-06 51.7 2.3 23 267-289 26-48 (177)
491 PF03266 NTPase_1: NTPase; In 93.3 0.058 1.3E-06 50.9 2.6 23 268-290 1-23 (168)
492 cd00071 GMPK Guanosine monopho 93.2 0.056 1.2E-06 49.1 2.4 21 269-289 2-22 (137)
493 TIGR02673 FtsE cell division A 93.2 0.058 1.3E-06 52.1 2.6 24 266-289 28-51 (214)
494 TIGR01360 aden_kin_iso1 adenyl 93.2 0.068 1.5E-06 50.1 3.0 25 267-291 4-28 (188)
495 cd02023 UMPK Uridine monophosp 93.2 0.056 1.2E-06 51.7 2.4 22 269-290 2-23 (198)
496 cd03226 ABC_cobalt_CbiO_domain 93.2 0.059 1.3E-06 51.8 2.5 23 267-289 27-49 (205)
497 cd03259 ABC_Carb_Solutes_like 93.2 0.06 1.3E-06 52.1 2.6 23 267-289 27-49 (213)
498 TIGR01166 cbiO cobalt transpor 93.2 0.067 1.5E-06 50.8 2.9 22 268-289 20-41 (190)
499 cd00820 PEPCK_HprK Phosphoenol 93.1 0.06 1.3E-06 47.2 2.3 21 267-287 16-36 (107)
500 PRK03839 putative kinase; Prov 93.1 0.064 1.4E-06 50.5 2.7 24 268-291 2-25 (180)
No 1
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-37 Score=326.42 Aligned_cols=222 Identities=54% Similarity=0.898 Sum_probs=210.9
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..+..++++|+|+++||||||+++|++.++.+.++.++.++.++...|+++|.|+|.+|.+.+|+++|+|+++....|+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....++|+|+|||.+|...|+.++.++|++|||||++.+.|+.+|+ ..+++++|+.+++.+|+.++||++||||++.|+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHH-HhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 422 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 422 ~e~le~i~e~l~~~l-~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+++|++|+..+..+| +.+||.+.++.|||||+++|+|+....+......||.+ +.|++.+..+
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~G-----p~LL~~id~~ 395 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKG-----PTLLSQIDSF 395 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcC-----ChHHHHHhhc
Confidence 999999999999999 88999999999999999999999999777677899999 4566666554
No 2
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-35 Score=305.65 Aligned_cols=218 Identities=48% Similarity=0.810 Sum_probs=206.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++++++||+++|||||+.+|++..+.++.+.+.+++..+...|+++|.|+|.+|.+.+++++|+|+++....|+..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
.+.|+|+|+|||++|+..|+.++.+||++|||||+..++++.++. ..+|+++|+.+++.+++.++||++||||++.|++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~-~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFG-VGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccc-cCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999999999994 7899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+++++++.++..+++.+||...+++||||||..|+||.+.. ..+.||.+ ++|++.+..+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pWY~G-----pTLleaLd~~ 221 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPWYKG-----PTLLEALDQL 221 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcCccC-----ChHHHHHhcc
Confidence 99999999999999999999888999999999999999986 35999998 5566666543
No 3
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.96 E-value=2.9e-29 Score=269.51 Aligned_cols=218 Identities=41% Similarity=0.768 Sum_probs=192.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+++|++++|||||+.+|++..+.+.+..+..++..+...++.+|.|+|.+|....|+.+|+|++.....+++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45679999999999999999999999999998888777777777778889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc--cc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv--~~ 420 (519)
++.++|+|||||++|...+..++..+|++|+|||+..+.++.++. ...++++++.++..+++|++||++||||+. .+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~-~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS-KDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC-CCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 999999999999999999999999999999999999886655554 347899999999999998899999999986 45
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+..+++++.+++..+++..|+...+++|+|+||++|+||.+... .+.||.+ +.|++.+..+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~---~~~Wy~g-----~tLl~~l~~i 223 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST---NLDWYKG-----PTLLEALDQI 223 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc---CCcccch-----HHHHHHHhhc
Confidence 56789999999999999999987778999999999999987543 4799987 4455555443
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=3.7e-29 Score=268.73 Aligned_cols=217 Identities=44% Similarity=0.815 Sum_probs=195.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+++|++++|||||+.+|++..+.+....+.+++..+...+++++.|+|.+|....|+.+|+|++.....+++.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45678999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc--cccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD--lv~~ 420 (519)
++.++|+|||||++|...+..++..+|++|+|||+..|.++.++. ...++++++.++..+++|++||++|||| ++.+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~-~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGIS-KDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccC-CCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 999999999999999999999999999999999999987666665 2579999999999999998999999999 5567
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRS 488 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~ 488 (519)
++.+++++.+++..+++..|+...+++|||+||++|+|+.+... .+.||.+ +.|++.+..
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G-----~tL~~~l~~ 222 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKG-----PTLLEALDT 222 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccch-----HHHHHHHhC
Confidence 78899999999999999999987779999999999999987543 4789987 445555544
No 5
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3e-29 Score=252.92 Aligned_cols=209 Identities=37% Similarity=0.585 Sum_probs=190.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhC--CCccchhhcccccccccccceEEEEEEEeec
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQG--KGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g--~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
.+..+|++-+|.++-||||||.||++....+...+...++..+...+ ...+.++...|.++.|++.|||+++++.+|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 46679999999999999999999999999888888888887776433 4567889999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
+..++|++.|||||+.|..+|..++.-||++|++||+..| +..|++.|..++..++++++|+++|||||+++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 9999999999999999999999999999999999999988 78999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+++.|++|..++..+...+++... .+||+||+.|+||.... ..++||.+ +.|++.++..
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~--~~IPiSAl~GDNV~~~s---~~mpWY~G-----ptLLe~LE~v 213 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDV--RFIPISALLGDNVVSKS---ENMPWYKG-----PTLLEILETV 213 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc--eEEechhccCCcccccc---cCCCcccC-----ccHHHHHhhc
Confidence 999999999999999999999764 88999999999999864 35999999 4566666544
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=1.5e-28 Score=262.94 Aligned_cols=210 Identities=45% Similarity=0.778 Sum_probs=186.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|++++|||||+++|++..+.+....+.+++..+...|+.++.++|.+|....|+.+|+|++.....+.++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCC--CcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV--GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~--g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
++.+.|||||||++|...+..++..+|++|||+|+.. + +..++.+++.++..++.+++|||+||+|+..+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG--------VMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC--------CCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999999986 4 45677888888888888779999999999865
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRS 488 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~ 488 (519)
..++++.+.+++..+++..++....++++++||++|+||.+++. .+.||.+ ..|++.+..
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~---~~~wy~g-----~~L~~~l~~ 214 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE---NMPWYNG-----PTLLEALDN 214 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc---CCCcccH-----HHHHHHHhc
Confidence 55667788889999998888876667899999999999999875 4789987 445555544
No 7
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.95 E-value=7.9e-28 Score=235.24 Aligned_cols=213 Identities=53% Similarity=0.898 Sum_probs=178.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|++++|||||+.+|++..+.+.......+...+...|..++.|++.+|....++.+|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999999998888777666666667777888888999999999999999999999999999999999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc--ccchhH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~--~~~e~l 425 (519)
|||||||.+|...+..++..+|++|+|||+..+.++..+. ...++.+++.++...+.+|+|||+||+|+.. +....+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFE-KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccc-cccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 9999999999999999999999999999999863322221 2345666777777777777999999999983 335567
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+.+.+++..+++..++...+++++|+||++|+||.+.. ..+.||.+ ..|++.+..+
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~---~~~~w~~g-----~~l~~~l~~~ 215 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKS---ENMPWYKG-----PTLLEALDSL 215 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCC---CCCCCccC-----CcHHHHHhCC
Confidence 88888888889988887777899999999999999754 35899988 5677766544
No 8
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.95 E-value=7.7e-28 Score=260.34 Aligned_cols=216 Identities=35% Similarity=0.541 Sum_probs=185.5
Q ss_pred ccCCCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCC--ccchhhccccc
Q 010046 245 SHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDES 322 (519)
Q Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~--s~~~a~~~d~~ 322 (519)
..++..+|.|+... ..+..++|+|+|++++|||||+++|++..+.+..+.+.+++.++...|.. +|.++|.+|..
T Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~ 85 (474)
T PRK05124 9 IANEGGVEAYLHAQ---QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGL 85 (474)
T ss_pred hhhhhhHHHHHhhc---cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCC
Confidence 33445566664433 34677999999999999999999999999999988888888888888864 78999999999
Q ss_pred ccccccceEEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH
Q 010046 323 AEERERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (519)
Q Consensus 323 ~~e~~~GiT~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~ 402 (519)
..|+.+|+|++.....+.+.+..++|||||||++|...+..++..+|++|+|||+..+ ...++.+++.++..
T Consensus 86 ~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~ 157 (474)
T PRK05124 86 QAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATL 157 (474)
T ss_pred hHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 55678888888888
Q ss_pred hCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCcccccc
Q 010046 403 FGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQ 475 (519)
Q Consensus 403 ~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~ 475 (519)
++++++|||+||+|++.++.+.++.+++++..+++.+++. ..+++||+||++|+||.++.. .+.||.++
T Consensus 158 lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~---~~~wy~G~ 226 (474)
T PRK05124 158 LGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSE---SMPWYSGP 226 (474)
T ss_pred hCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccc---cccccchh
Confidence 8888899999999998766677888888888888877742 357899999999999998753 37899764
No 9
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.95 E-value=1.6e-27 Score=231.13 Aligned_cols=204 Identities=36% Similarity=0.602 Sum_probs=171.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|++|+|||||+++|++..+.+.......++......++..+.+.+.++....++.+|+|++.....+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 59999999999999999999999988876666666666677777888889999999999999999999889999999999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
||||||+++|...+..++..+|++|+|+|+..+ ...+...+..++...+.+++|+|+||+|+..+....++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHH
Confidence 999999999998888899999999999999977 345666667777777777788899999998654555677
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 428 i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+...+..+++.+++. ..++|++||++|.|+.+... .+.||.+ +.|++.+..+
T Consensus 153 i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~---~~~w~~g-----~~~~~~~~~~ 204 (208)
T cd04166 153 IVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSE---NMPWYSG-----PTLLEHLETV 204 (208)
T ss_pred HHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCC---CCCCCCC-----CcHHHHHhcC
Confidence 788888888888864 35789999999999998763 5899988 5566665543
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.95 E-value=1e-27 Score=255.09 Aligned_cols=195 Identities=38% Similarity=0.629 Sum_probs=176.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCC--ccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~--s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
++|+|+|++++|||||+++|++..+.+..+.+.++..++...+.. +|.|+|.+|....|+.+|+|++.....+.+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999999999999988888888888777764 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.|||||||++|...+..++..+|++|+|||+..+ +..++.+++.++..++.+++|||+||+|+..++.+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 999999999999999999999999999999999988 567889999999998988899999999998766677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWM 474 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~ 474 (519)
++.+.+++..+++.+++. +++++|+||++|+|+.++.+ .+.||.+
T Consensus 153 ~~~i~~~~~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g 197 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNVVSRSE---SMPWYSG 197 (406)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEeecccCCCCccccc---CCCccch
Confidence 888888898888888874 56899999999999998754 4789976
No 11
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.95 E-value=2.3e-27 Score=253.82 Aligned_cols=213 Identities=43% Similarity=0.791 Sum_probs=185.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|++++|||||+++|++..+.+....+.++++.+...|+++|.|+|.+|....++.+|+|++.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999999999998888888988999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..++|||||||++|...+..++..+|++|||||++.+.++ ...++.+++.++...+.+++|||+||+|+..+..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 99999999999999999999999999999999999987432 2345667777777777777999999999986666
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRS 488 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~ 488 (519)
+.++.+.+++..+++..++....++|+|+||++|+||.+++. .+.||.+ ..|++.+..
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~---~~~w~~g-----~~l~~~l~~ 216 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE---NTPWYKG-----KTLLEALDA 216 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc---CCccccc-----hHHHHHHhc
Confidence 778888999999999999876678999999999999999875 3689986 345555543
No 12
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.93 E-value=2e-25 Score=215.03 Aligned_cols=190 Identities=33% Similarity=0.491 Sum_probs=156.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|++++|||||+++|++... ..++......+.++....++.+|+|++.....+++.+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~ 66 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRH 66 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCeE
Confidence 47899999999999999999996421 111111111245788889999999999998899999999
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
++|+|||||.+|...+..++..+|++|+|||+..+ ...++.+++.++...++|++|+|+||+|+.. ..+.+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELL 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHH
Confidence 99999999999999999999999999999999987 5678999999999999887889999999973 44556
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+.+.+++..+++.+|+...+++++|+||++|.|+.+ .+.||.. ...|++.+.+.
T Consensus 138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~------~~~w~~~----~~~l~~~l~~~ 191 (195)
T cd01884 138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD------PNKWVKK----ILELLDALDSY 191 (195)
T ss_pred HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC------CCcchhc----HhHHHHHHHhC
Confidence 778889999999999987789999999999999865 2678863 25566666544
No 13
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.93 E-value=8.3e-26 Score=252.84 Aligned_cols=209 Identities=38% Similarity=0.611 Sum_probs=181.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCC--CccchhhcccccccccccceEEEEEEEeec
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~--~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
.+..++|+|+|++++|||||+++|++..+.+..+.+..+...+...|. .++.++|.++....++.+|+|++.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345678999999999999999999999999988888888888888887 789999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
+++..++|||||||++|...+..++..+|++|||||+..+ ...++.+++.++..++++++|||+||+|++.+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDY 172 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 9999999999999999999999999999999999999987 45678888888888888889999999999866
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
+.++++.+..++..+++.+++. +++++|+||++|.|+.++.. .+.||.+ ..|++.+..+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g-----~tL~~~l~~~ 231 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLH--DVTFIPISALKGDNVVTRSA---RMPWYEG-----PSLLEHLETV 231 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCC--CccEEEEecccCCCcccccc---CCCcccH-----hHHHHHHhcC
Confidence 6677888888888888888873 46789999999999998654 3689976 3455555443
No 14
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=8.3e-25 Score=208.46 Aligned_cols=178 Identities=37% Similarity=0.609 Sum_probs=145.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--C
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 341 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~--~ 341 (519)
++.++|+|+|++++|||||+++|++..+.+....... ......+....+..+++|+......+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhcccccccccccccccc
Confidence 3578999999999999999999998777655443211 001225566677788888887777777 8
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....++|+|||||.+|...+..++..+|++|+|||+..+ ...++.+++.++...++| +|||+||+|+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRELGIP-IIVVLNKMDLI--- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHHTT-S-EEEEEETCTSS---
T ss_pred cccceeecccccccceeecccceecccccceeeeecccc--------cccccccccccccccccc-eEEeeeeccch---
Confidence 899999999999999999999999999999999999988 678999999999999999 99999999998
Q ss_pred chhHHHHHHHHH-HHHHhcCCCC-CCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLG-TFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~-~~l~~~g~~~-~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+++++.+++. .+++..++.. ..+++||+||++|.|+.++++.+
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l 182 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEAL 182 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHH
Confidence 445566666666 5667777765 46899999999999999987643
No 15
>PRK12735 elongation factor Tu; Reviewed
Probab=99.91 E-value=3.2e-23 Score=220.03 Aligned_cols=176 Identities=34% Similarity=0.509 Sum_probs=147.6
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
++.++.++|+++|++++|||||+++|++... ..++..+...+.++....++.+|+|++.....+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~ 71 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE 71 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEc
Confidence 4567789999999999999999999995321 1233344334578899999999999999888888
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..++|||||||++|...+..++..+|++++|+|+..+ ...++.+++.++...++|++|+|+||+|+..
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~- 142 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcc-
Confidence 8888999999999999999999999999999999999977 4578889999999999886667899999974
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~ 460 (519)
..+.++.+.+++..+++.+++...+++++|+||++|.|..
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~ 182 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD 182 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCC
Confidence 3445667777899999998886556899999999999863
No 16
>CHL00071 tufA elongation factor Tu
Probab=99.90 E-value=1.9e-23 Score=222.51 Aligned_cols=189 Identities=30% Similarity=0.463 Sum_probs=155.9
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
...++.++|+++|++++|||||+++|++..+.+...... .+ ..+|....++.+|+|++.....+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~--------------~~-~~~d~~~~e~~rg~T~~~~~~~~~ 71 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAK--------------KY-DEIDSAPEEKARGITINTAHVEYE 71 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccc--------------cc-ccccCChhhhcCCEeEEccEEEEc
Confidence 446778999999999999999999999776654332211 11 247788899999999999888888
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
.++..++|+|||||.+|...+..++..+|++++|+|+..+ +..++++++.++..+++|++|+|+||+|++..
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 8889999999999999999999999999999999999987 56899999999999999878899999999852
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc--ccCcccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG--IRGPVYW 473 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i--~~~~w~~ 473 (519)
.+.++.+.+++..+|+..++....++++|+||++|.|+.+..... ....||.
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~ 197 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVD 197 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhh
Confidence 445677888999999999987667899999999999887543211 1136875
No 17
>PLN03126 Elongation factor Tu; Provisional
Probab=99.90 E-value=3.8e-23 Score=223.52 Aligned_cols=175 Identities=34% Similarity=0.543 Sum_probs=151.1
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+++|++++|||||+++|++..+.+....... ...+|....++.+|+|++.....+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 456789999999999999999999997766553332111 12478888999999999999888988
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
++..++|||||||++|...+..++..+|++|+|||+..+ ...++++++.++..+++|++|+++||+|++. .
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~ 212 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-D 212 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccC-H
Confidence 999999999999999999999999999999999999987 5689999999999999988889999999985 3
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~ 460 (519)
.+.++.+.+++..+|+.+|+...+++++|+||++|.++.
T Consensus 213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~ 251 (478)
T PLN03126 213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALEAL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccccc
Confidence 455777888999999999997778999999999998775
No 18
>PRK12736 elongation factor Tu; Reviewed
Probab=99.90 E-value=2.1e-23 Score=221.24 Aligned_cols=172 Identities=35% Similarity=0.539 Sum_probs=145.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+++|++++|||||+++|++... ..+++.+...+.+|....++.+|+|++.....+..
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 456789999999999999999999984321 12333333334688899999999999999888888
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..++|||||||++|...+..++..+|++|+|+|+..+ ...++.+++.++...++|++|||+||+|++. .
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~-~ 143 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVD-D 143 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcc-h
Confidence 889999999999999999999999999999999999987 5678999999999999987889999999974 2
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCC
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGe 457 (519)
.+.++.+.+++..+++..++...+++++|+||++|.
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 345566778899999999987667899999999984
No 19
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.90 E-value=1e-22 Score=215.95 Aligned_cols=173 Identities=34% Similarity=0.527 Sum_probs=145.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+|+|++++|||||+++|++... ..|+..+...+.+|....|+.+|+|++.....++.
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 356789999999999999999999984321 12333333345788999999999999999888888
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..+.|||||||++|...+..++..+|++|+|+|+..+ ...++.+++.++...++|++|+|+||+|++..
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~- 143 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDD- 143 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCH-
Confidence 888999999999999999999999999999999999987 56788999999999999977789999999842
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCC
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 458 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGeg 458 (519)
.+.++.+.+++..+++..++...+++++++||++|.+
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~ 180 (394)
T TIGR00485 144 EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALE 180 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCccEEECccccccc
Confidence 3455667788999999988876668999999999863
No 20
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.7e-23 Score=214.21 Aligned_cols=212 Identities=44% Similarity=0.766 Sum_probs=197.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.+..++++++|++.+||||+-+.|++..+.++.++..+|+..+...++.++...|.++...+++..|-|+.+...+|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc--ccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA--VQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl--v~~ 420 (519)
...++|+|+|||..|...|+.++.+||+.++|+.+..+.++.+|+. ..|+++|..+++..++.++|+++||||- ++|
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer-GgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc-ccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999999999999985 4799999999999999999999999995 568
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC-CCceEEEeccccCCCccccccccccCcccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLI 477 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~-~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~ 477 (519)
+.++++++.+.+..+|+.+|+.. +.+.|+|+|..+|.++.+... ..+.||.++..
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~f 290 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPIF 290 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCcc
Confidence 89999999999999999998874 557899999999999999876 34899998543
No 21
>PRK00049 elongation factor Tu; Reviewed
Probab=99.89 E-value=1.5e-22 Score=214.82 Aligned_cols=184 Identities=32% Similarity=0.455 Sum_probs=149.6
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
...++.++|+|+|++++|||||+++|++... ..+.......+.+|....++.+|+|++.....+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~ 71 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE 71 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEc
Confidence 3457789999999999999999999995321 1111221122367888899999999999888888
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..++|+|||||.+|...+..++..+|++++|+|+..+ ...++.+++.++...++|.+|+++||+|+..
T Consensus 72 ~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~- 142 (396)
T PRK00049 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcc-
Confidence 8889999999999999999999999999999999999987 5678999999999999885557899999974
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWM 474 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~ 474 (519)
..+.++.+.+++..+++.+++...+++++|+||++|.+... ...||.+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~------~~~w~~~ 190 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDD------DEEWEKK 190 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCC------ccccccc
Confidence 34456677788999999999876678999999999977322 3678753
No 22
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=8.6e-22 Score=180.38 Aligned_cols=159 Identities=30% Similarity=0.486 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-CeEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHV 346 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-~~~l 346 (519)
.|+|+|++|||||||+++|++... +....+..+++|+......+... +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~----------------------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET----------------------------DRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc----------------------------ccchhhhccCceEEeeeEEEEecCCcEE
Confidence 599999999999999999984211 01111222445555444444444 6789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..++..+|++|+|+|+..+ ...+..+.+..+...+.+|+|+|+||+|+.. .....
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~--------~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~--~~~~~ 123 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG--------IMPQTREHLEILELLGIKRGLVVLTKADLVD--EDWLE 123 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC--------ccHhHHHHHHHHHHhCCCcEEEEEECccccC--HHHHH
Confidence 9999999999988888889999999999999865 2234444445555556656999999999973 23334
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++...++..++ ...+++++||++|+|+.+++..+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 124 LVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred HHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHHHHHHH
Confidence 445566666655433 23578999999999999998644
No 23
>PLN03127 Elongation factor Tu; Provisional
Probab=99.86 E-value=2.4e-21 Score=208.32 Aligned_cols=171 Identities=36% Similarity=0.573 Sum_probs=140.2
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhh-cccccccccccceEEEEEEEee
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW-ALDESAEERERGITMTVAVAYF 339 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~-~~d~~~~e~~~GiT~~~~~~~~ 339 (519)
...++.++|+++||+++|||||+++|++.. ...|... ...+ .+|....|+.+|+|++.....+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~ 119 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEY 119 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEE
Confidence 346778999999999999999999997321 0112211 1112 5788889999999999999999
Q ss_pred cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 340 ~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
+..+.+++|+|||||.+|...+..++..+|+++||||+..+ ...++++++.++..+++|.+|+|+||+|++.
T Consensus 120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 99999999999999999999999999999999999999977 5678999999999999986788999999984
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccC
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG 456 (519)
..+.++.+.+++..++..+++...+++++|+||+++
T Consensus 192 -~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa 227 (447)
T PLN03127 192 -DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSA 227 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCcceEEEecccee
Confidence 234556666788888888888766789999998743
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=204.69 Aligned_cols=210 Identities=22% Similarity=0.227 Sum_probs=167.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
..+++|+|||.||+|||||+|+|++....+... ..|+|++.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 467999999999999999999999765555433 48999999999999999
Q ss_pred eEEEEEeCCCCCc----------c-hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010046 344 YHVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 344 ~~l~LiDTPG~~~----------f-~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
..+.|+||+|.++ | .......+..+|++++|+|++.+ +..|...++.++...+.+ +|||+
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~~g~~-~vIvv 296 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG--------ISEQDLRIAGLIEEAGRG-IVIVV 296 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC--------chHHHHHHHHHHHHcCCC-eEEEE
Confidence 9999999999543 2 12345677889999999999998 778999999999999988 89999
Q ss_pred eecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhccccC
Q 010046 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSLYLC 492 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~~~~ 492 (519)
||+|++..+...++..++++...+..+++ .+++++||++|.|+.++|+.+......+..++++..|++++..-...
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~ 372 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAK 372 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHh
Confidence 99999865556778888888888877776 46799999999999999999888888889999999999998664222
Q ss_pred CCeee-----ecCCceeEEecccceeeec
Q 010046 493 PYVTF-----LNHSTGRCLPVANWRLELF 516 (519)
Q Consensus 493 ~~~~~-----~~~~~g~~~p~~~~~~~l~ 516 (519)
-.... .+-..++..-..++.+.||
T Consensus 373 ~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf 401 (444)
T COG1160 373 HPPPVRYGRRLKIKYATQVSTNPPTFVLF 401 (444)
T ss_pred CCCCccCCceEEEEEEecCCCCCCEEEEE
Confidence 21111 1123344444566666655
No 25
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=4e-21 Score=212.79 Aligned_cols=161 Identities=32% Similarity=0.490 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+++|++++|||||+++|.+.. .+....+..+|+|++..+..+...+..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~----------------------------~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA----------------------------ADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc----------------------------CcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 469999999999999999998421 1233445568899988877788888999
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.|||||||++|...+..++..+|++|+|||+..+ ...++.+++.++...++|++|||+||+|++ +.+.++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv--~~~~~~ 122 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRV--NEEEIK 122 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCC--CHHHHH
Confidence 9999999999999999999999999999999987 557888999889888988899999999998 445566
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+++..+++..++.. ++++|++||++|+||.+++..+
T Consensus 123 ~~~~ei~~~l~~~~~~~-~~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLK-NAKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred HHHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCchhHHHHH
Confidence 67778888887776542 4689999999999999987643
No 26
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=9.5e-21 Score=177.16 Aligned_cols=167 Identities=29% Similarity=0.430 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee-----cC
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 341 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~-----~~ 341 (519)
++|+++|++++|||||+++|++..+.+...... .++.+....++..|++.......+ ..
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMK----------------EQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCc----------------eEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 479999999999999999999765544322100 123444445556677765433333 45
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....+.||||||+++|...+..++..+|++|+|+|++.+.. .+....+..+...++| +|+|+||+|+...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~--------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~- 134 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE--------AQTLANFYLALENNLE-IIPVINKIDLPSA- 134 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc--------HhhHHHHHHHHHcCCC-EEEEEECCCCCcC-
Confidence 67789999999999999999999999999999999987621 2222333333445666 9999999998632
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
......+++.. .+++. ...++++||++|+|+.++++.+
T Consensus 135 --~~~~~~~~~~~---~~~~~--~~~~~~~Sa~~g~gi~~l~~~l 172 (179)
T cd01890 135 --DPERVKQQIED---VLGLD--PSEAILVSAKTGLGVEDLLEAI 172 (179)
T ss_pred --CHHHHHHHHHH---HhCCC--cccEEEeeccCCCCHHHHHHHH
Confidence 12222333333 33442 1357999999999999998744
No 27
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=6.4e-21 Score=184.30 Aligned_cols=112 Identities=28% Similarity=0.380 Sum_probs=85.4
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++|||||||++|...+..++..+|++|+|+|+..+. ...++.+++..+...+.+|+|||+||+|+.. ..
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~--~~ 153 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQTSEHLAALEIMGLKHIIIVQNKIDLVK--EE 153 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcchHHHHHHHHHcCCCcEEEEEEchhccC--HH
Confidence 78999999999999999999999999999999999641 1234555666666677777999999999973 33
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+..++..... ..+++|++||++|+||.++++.+
T Consensus 154 ~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~L~~~l 194 (203)
T cd01888 154 QALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDVLLEYI 194 (203)
T ss_pred HHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHHHHHHH
Confidence 344444555555544322 24578999999999999998643
No 28
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.85 E-value=1.1e-20 Score=210.16 Aligned_cols=160 Identities=31% Similarity=0.488 Sum_probs=135.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-CCeEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYHV 346 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-~~~~l 346 (519)
.|+++|++++|||||+++|.+. ..+....+..+|+|++..+..+.. .+..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~----------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV----------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC----------------------------CCccchhcccCCceEEeeeEEEecCCCcEE
Confidence 5899999999999999999842 134455677789999887776654 35678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.|||||||++|...+..++..+|++|+|||+..+ ++.++.+++.++..++++++|||+||+|++ +.++++
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg--------~~~qT~ehl~il~~lgi~~iIVVlNKiDlv--~~~~~~ 123 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG--------VMAQTREHLAILQLTGNPMLTVALTKADRV--DEARIA 123 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCccC--CHHHHH
Confidence 9999999999999999999999999999999987 678999999999999988778999999998 456677
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.+.+++..++...++. ..++||+||++|+|+.++++.+.
T Consensus 124 ~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~L~~~L~ 162 (614)
T PRK10512 124 EVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDALREHLL 162 (614)
T ss_pred HHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHHHHHHHH
Confidence 7788888888777764 35789999999999999987653
No 29
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=8e-21 Score=181.31 Aligned_cols=165 Identities=30% Similarity=0.464 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC----
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~---- 342 (519)
+||+|+|++|+|||||+++|+...+ .+.++....+..+|+|+......+...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4799999999999999999984211 012333444555677766554433332
Q ss_pred ----------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010046 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 343 ----------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
+..++||||||+..+...+..++..+|++|+|+|+..+ ...+..+.+.++...+.| +++|+
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~ 127 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG--------IQTQTAECLVIGEILCKK-LIVVL 127 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEE
Confidence 67899999999998888888888889999999999976 223344444445555665 89999
Q ss_pred eecccccccc--hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 413 NKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 413 NKiDlv~~~~--e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
||+|+..... ..++++.+.+...+...++ .+++++++||++|+|+.+++..+
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~L~~~l 181 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAELGKDL 181 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHHHHHHH
Confidence 9999973211 1233444444444443343 34689999999999999987643
No 30
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=1.5e-20 Score=179.72 Aligned_cols=172 Identities=27% Similarity=0.341 Sum_probs=123.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|++++|||||+++|++..+.+...... ..+.++....+...|+++......+......
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV---------------EERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc---------------cccccccchhHHhcccccccceeEEEECCEE
Confidence 4689999999999999999999643333221100 0122444445666788877766677778899
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||||+++|...+..+++.+|++|+|+|+..+ ...+..+++..+...++| +++|+||+|+... ..
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~---~~ 134 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPDA---RP 134 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCCCCC---CH
Confidence 99999999999999999999999999999999875 223444555555556666 8999999999742 23
Q ss_pred HHHHHHHHHHHHhcCCC--CCCceEEEeccccCCCcccccc
Q 010046 426 DSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~--~~~i~~IpvSA~tGegI~el~~ 464 (519)
+...+++..++...+.. ..+++++++||++|.|+.++-+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 34455555555544432 2256899999999999988743
No 31
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.84 E-value=1.4e-20 Score=176.24 Aligned_cols=173 Identities=38% Similarity=0.582 Sum_probs=126.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|+|||||+|+|++............ ...++....+...+++.......+......++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE---------------ETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee---------------cccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 489999999999999999997654432221110 01223333444566666666666666788999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
||||||+.++...+..++..+|++++|+|+..+ ......+.+..+...+.| +++|+||+|+.. ...+..
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~~ 134 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG--------VQPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLEE 134 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------CcHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHHH
Confidence 999999999988888999999999999999876 234455566666655555 999999999984 445556
Q ss_pred HHHHHHHHHHhcCC---------CCCCceEEEeccccCCCcccccccc
Q 010046 428 IKVQLGTFLRSCGF---------KDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 428 i~e~l~~~l~~~g~---------~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+.+...++..+. .....+++++||++|.|+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l 182 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAI 182 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHH
Confidence 66777777776654 2345789999999999999997643
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=2.2e-20 Score=206.85 Aligned_cols=165 Identities=28% Similarity=0.351 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+||+++|||||+++|++..+.+...... -.+.+|....++++|+|+......+.+.++.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v---------------~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAV---------------AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccc---------------eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 589999999999999999999876655433210 01468888999999999999888899999999
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
+|||||||.+|...+..+++.+|++|||||+..+ ...+++.++..+...++| +|||+||+|+... +++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a---~~~ 134 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPSA---RPD 134 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc---CHH
Confidence 9999999999999999999999999999999987 567888999999889988 7999999998642 344
Q ss_pred HHHHHHHHHHHhcCCCC--CCceEEEeccccCCC
Q 010046 427 SIKVQLGTFLRSCGFKD--ASLTWIPLSALENQN 458 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~--~~i~~IpvSA~tGeg 458 (519)
++.+++..++..++..+ ..++++++||++|.+
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWA 168 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcc
Confidence 55666666666655432 246899999999974
No 33
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=2.4e-20 Score=198.61 Aligned_cols=166 Identities=31% Similarity=0.458 Sum_probs=123.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-- 340 (519)
+++.++|+++|++++|||||+++|.+. ..+....+..+|+|+...+..+.
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~----------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~ 52 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELKRGISIRLGYADAEIY 52 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCe----------------------------ecccCHhHHHcCceeEecccccccc
Confidence 357789999999999999999999632 12333445556666655432221
Q ss_pred ------------C------------CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHH
Q 010046 341 ------------S------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (519)
Q Consensus 341 ------------~------------~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~ 396 (519)
. ....++|||||||++|...+..++..+|++|||||+..+. ...++.++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~ 125 (406)
T TIGR03680 53 KCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEH 125 (406)
T ss_pred cccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHH
Confidence 0 1467999999999999999999999999999999999761 14677888
Q ss_pred HHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 397 l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+.++..++.+++|||+||+|+.. .+......+++..+++... ..+++++|+||++|+|+.++++.+.
T Consensus 126 l~~l~~~gi~~iIVvvNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~L~e~L~ 192 (406)
T TIGR03680 126 LMALEIIGIKNIVIVQNKIDLVS--KEKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDALLEAIE 192 (406)
T ss_pred HHHHHHcCCCeEEEEEEccccCC--HHHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHHHHHHHH
Confidence 88888888888999999999984 2333333445555554432 2346899999999999999987653
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=5.1e-20 Score=196.82 Aligned_cols=182 Identities=23% Similarity=0.192 Sum_probs=132.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI------------------------------VSDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee------------------------------cCCCCCceECcEeEEEEECC
Confidence 356899999999999999999999543211 11235666655555555667
Q ss_pred eEEEEEeCCCCCcchh-----------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010046 344 YHVVVLDSPGHKDFVP-----------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~-----------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
..+.||||||+.++.. ....++..+|++|+|+|+..+ ...+...++..+...+.| +|||+
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~ 290 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG--------ITEQDLRIAGLILEAGKA-LVIVV 290 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEE
Confidence 7899999999765432 124567889999999999987 345666677777777766 99999
Q ss_pred eecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
||+|+.. ....++.+.+.+...+...+ .++++++||++|.|+.++|+.+......+..++++..+++.+...
T Consensus 291 NK~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (429)
T TIGR03594 291 NKWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA 362 (429)
T ss_pred ECcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 9999982 33445566666665554333 368899999999999999988755544556778888887777553
No 35
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.8e-20 Score=182.64 Aligned_cols=172 Identities=35% Similarity=0.548 Sum_probs=146.6
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
...+...||+.|||++.|||||..+|....... +...+..-...+...+++.+|+|+......++
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~---------------~~~~~~~y~~id~aPeEk~rGITIntahveye 71 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKK---------------GGAEAKAYDQIDNAPEEKARGITINTAHVEYE 71 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhh---------------ccccccchhhhccCchHhhcCceeccceeEEe
Confidence 345678999999999999999999997432211 11111111224567788999999999999999
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..+..+|+|||.+|.++|+.++.+.|.+|||+.+..| .++|+++|+.++++.++|.+|+++||+|++.
T Consensus 72 t~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvd- 142 (394)
T COG0050 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVD- 142 (394)
T ss_pred cCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccC-
Confidence 9999999999999999999999999999999999999988 6799999999999999999999999999995
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccC
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG 456 (519)
+.+.++....+++.+|..++|...+.+++--||+..
T Consensus 143 d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~a 178 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKA 178 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhh
Confidence 477888889999999999999988889998888743
No 36
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=3.8e-20 Score=182.09 Aligned_cols=185 Identities=23% Similarity=0.315 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccc----cchhhhhHHHHhhCCCccchhhccccccccc----ccceEEEEEEEee
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQ----KQMHKYEKEAKLQGKGSFAYAWALDESAEER----ERGITMTVAVAYF 339 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~----~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~----~~GiT~~~~~~~~ 339 (519)
+|+|+|+.++|||||+++|......... ..+.++..+.. .|..+....+.+....... ..+.+.......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~-~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVE-SGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhh-cCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 5899999999999999999843211100 11111111111 2222211111111111000 0111111112234
Q ss_pred cCCCeEEEEEeCCCCCcchhhhhhccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 340 DSKNYHVVVLDSPGHKDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 340 ~~~~~~l~LiDTPG~~~f~~~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
+..+..++|+|||||++|...+..++. .+|++++|+|+..+ ...++.+++.++...++| +|+|+||+|+
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~~~~ip-~ivvvNK~D~ 150 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLALALNIP-VFVVVTKIDL 150 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 456788999999999999999988885 79999999999987 568899999999999988 8999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCC---------------------CCCceEEEeccccCCCcccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~---------------------~~~i~~IpvSA~tGegI~el~~ 464 (519)
. +..++....+.+..+++..|+. ...+++|++||.+|+|++++..
T Consensus 151 ~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 151 A--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred c--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence 7 5566777888888888754433 1235899999999999999865
No 37
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.82 E-value=3.8e-20 Score=199.14 Aligned_cols=167 Identities=26% Similarity=0.355 Sum_probs=127.0
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD- 340 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~- 340 (519)
.++..++|+++||+++|||||+.+|++... +.+.+|..+|+|++..+..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~----------------------------~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKT----------------------------VRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCc----------------------------ccchhhHHhCCchhcccccccc
Confidence 356779999999999999999999994321 222334444444443322110
Q ss_pred --------------------------------CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccc
Q 010046 341 --------------------------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388 (519)
Q Consensus 341 --------------------------------~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~ 388 (519)
.....+.|+|||||++|...++.++..+|++|+|||+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~------- 154 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC------- 154 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------
Confidence 01247899999999999999999999999999999999741
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 389 l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.+.++.+++.++..++++++|||+||+|++ +.+.+++..+++..+++.... ...++||+||++|+||..|.+.+.
T Consensus 155 ~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv--~~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 155 PQPQTSEHLAAVEIMKLKHIIILQNKIDLV--KEAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred cchhhHHHHHHHHHcCCCcEEEEEeccccc--CHHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHHHHHHHHH
Confidence 357889999999999998899999999998 345556666777777655432 457899999999999999987653
No 38
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.1e-20 Score=195.48 Aligned_cols=171 Identities=33% Similarity=0.408 Sum_probs=141.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..|++||.|.+.|||||..+|+..++.+.....+ ..++|..+.|+++|||+......+.+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 456789999999999999999999888866554322 3468999999999999976665555555
Q ss_pred ---eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 344 ---YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ---~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
+.++|||||||.+|..+..+.+..|+.+||||||++| .++|+...+.++.+.+.. +|.|+||+|+..+
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG--------vqAQT~anf~lAfe~~L~-iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG--------VQAQTVANFYLAFEAGLA-IIPVLNKIDLPSA 192 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC--------chHHHHHHHHHHHHcCCe-EEEeeeccCCCCC
Confidence 9999999999999999999999999999999999999 789999999999999988 8999999999866
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+.+ +...++...+ ++.. -.++.+||++|.|+.++++++.
T Consensus 193 dpe---~V~~q~~~lF---~~~~--~~~i~vSAK~G~~v~~lL~AII 231 (650)
T KOG0462|consen 193 DPE---RVENQLFELF---DIPP--AEVIYVSAKTGLNVEELLEAII 231 (650)
T ss_pred CHH---HHHHHHHHHh---cCCc--cceEEEEeccCccHHHHHHHHH
Confidence 544 4445555543 3322 3679999999999999998763
No 39
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.82 E-value=8.5e-20 Score=179.32 Aligned_cols=169 Identities=30% Similarity=0.397 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEe--ecC---
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FDS--- 341 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~--~~~--- 341 (519)
++|+|+|++++|||||+++|+...+.+.... .+ -.+++|....++.+|+|+...... +..
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g---~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AG---KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CC---ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 4799999999999999999998776554332 11 134678888899999998765433 332
Q ss_pred -----CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 342 -----KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 342 -----~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
....+.|||||||.+|...+..+++.+|++|+|+|+..+ ...++++++..+...++| +|+|+||+|
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 278899999999999999999999999999999999987 456778888888777776 899999999
Q ss_pred ccc--------ccchhHHHHHHHHHHHHHhcCCC-------------CCCceEEEeccccCCCc
Q 010046 417 AVQ--------YSKDRFDSIKVQLGTFLRSCGFK-------------DASLTWIPLSALENQNL 459 (519)
Q Consensus 417 lv~--------~~~e~le~i~e~l~~~l~~~g~~-------------~~~i~~IpvSA~tGegI 459 (519)
+.. ....++..+.+++..++..+.-. +..-.+++.||+.|...
T Consensus 137 ~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 137 RLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred cchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 761 12345667777777777766321 11112677888888776
No 40
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.4e-19 Score=204.74 Aligned_cols=159 Identities=26% Similarity=0.354 Sum_probs=123.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
...++++|+|+|++++|||||+++|.+... .....+|+|.......+.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-------------------------------~~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNV-------------------------------AAGEAGGITQHIGAYQVET 334 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCc-------------------------------cccccCceeeeccEEEEEE
Confidence 357889999999999999999999973211 0111256777766666777
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..++|||||||+.|..++..++..+|++|||||+..+ ...++.+++.++...++| +|||+||+|+..++
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~ 405 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN 405 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccC
Confidence 788999999999999999999999999999999999987 567888889888888888 99999999997543
Q ss_pred chhHHHHHHHHHH---HHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~---~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. +.+...+.. +...++ ..+++|++||++|+||.++++.+
T Consensus 406 ~---e~V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 406 P---DRVKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred H---HHHHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchHHHHhh
Confidence 2 223333222 112222 24689999999999999998754
No 41
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=170.49 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=114.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...+||+|+|..++|||||+-|+.... | ....+++.|..+-.....+....
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~----------------------F-------~e~~e~TIGaaF~tktv~~~~~~ 53 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQ----------------------F-------HENIEPTIGAAFLTKTVTVDDNT 53 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCc----------------------c-------ccccccccccEEEEEEEEeCCcE
Confidence 457899999999999999999998211 1 01124445555555555666667
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE--EEEeeccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI--VAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI--VVvNKiDlv~~~ 421 (519)
++|.||||+|+++|......|++.|+++|+|+|+++. .+|..++.+.+++ -+... |.++ ||+||+||....
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~---~SF~~aK~WvkeL---~~~~~-~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE---ESFEKAKNWVKEL---QRQAS-PNIVIALVGNKADLLERR 126 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccH---HHHHHHHHHHHHH---HhhCC-CCeEEEEecchhhhhhcc
Confidence 8999999999999999999999999999999999976 3343333333333 22322 4344 599999998533
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
... .++...+....| ..|+++||++|.||.++|..+.
T Consensus 127 ~V~----~~ea~~yAe~~g-----ll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 127 EVE----FEEAQAYAESQG-----LLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred ccc----HHHHHHHHHhcC-----CEEEEEecccccCHHHHHHHHH
Confidence 333 345555655555 4889999999999999998763
No 42
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=4.7e-20 Score=171.25 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+++|.||+|||||+|+|++....+ ...+|+|.+.....+...+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v-------------------------------~n~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV-------------------------------GNWPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE-------------------------------EESTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee-------------------------------cCCCCCCeeeeeEEEEecCceE
Confidence 579999999999999999999754322 1237888887777788888999
Q ss_pred EEEeCCCCCcchh------hhhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 347 VVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 347 ~LiDTPG~~~f~~------~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.|+|+||...+.. ....++ ..+|++|+|+|+++. ....++...+..++.| +|+|+||+|+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l----------~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL----------ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH----------HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH----------HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 9999999433221 112232 579999999999953 3455677777888988 99999999998
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.... +..-.+.+.+.+ | ++++|+||++|+|+.+++++
T Consensus 119 ~~~g--~~id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 119 ERKG--IEIDAEKLSERL---G-----VPVIPVSARTGEGIDELKDA 155 (156)
T ss_dssp HHTT--EEE-HHHHHHHH---T-----S-EEEEBTTTTBTHHHHHHH
T ss_pred HHcC--CEECHHHHHHHh---C-----CCEEEEEeCCCcCHHHHHhh
Confidence 5322 222244455544 3 58899999999999998753
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=9.4e-20 Score=168.32 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|++|+|||||+++|.+....... ..... ...|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~-----------------------~~~~~----~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG-----------------------LPPSK----ITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC-----------------------Ccccc----cCCccccceEEEEECCEEEE
Confidence 5899999999999999999853221000 00000 11122222223444578999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH---HhCCCcEEEEEeecccccccchh
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
||||||+..|...+..++..+|++|+|+|+.... . +.....++..++. ..+.| +|+|+||+|+.. ...
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~--~~~ 124 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---R---FEESKSALEKVLRNEALEGVP-LLILANKQDLPD--ALS 124 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---H---HHHHHHHHHHHHhChhhcCCC-EEEEEEcccccc--CCC
Confidence 9999999999988888999999999999998641 1 2222222222222 23445 999999999864 233
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.+++.+.+.......+. ..++++++||++|+|+.++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e~~~~ 163 (167)
T cd04160 125 VEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVREGIEW 163 (167)
T ss_pred HHHHHHHhccccccccC--CceEEEEeeCCCCcCHHHHHHH
Confidence 33344444433332332 3468999999999999998753
No 44
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.81 E-value=2.5e-19 Score=164.48 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=101.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|.+|+|||||++++++..... ...+..+... .....+......
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~ 51 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVT-----------------------------DYDPTIEDSY-TKQCEIDGQWAI 51 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------------ccCCCccceE-EEEEEECCEEEE
Confidence 4789999999999999999998532100 0000111111 111223444467
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||||+++|...+..++..+|++++|+|++... .+..+..+...+.......+. |+|||+||+|+.......
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-piiiv~NK~Dl~~~~~~~- 126 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SFEEVDKFHTQILRVKDRDEF-PMILVGNKADLEHQRKVS- 126 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCC-CEEEEeeCccccccceec-
Confidence 899999999999999889999999999999999752 222222222222222222234 499999999987422111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+++..+ ++++++||++|.|+.++|+.+
T Consensus 127 ---~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 127 ---REEGQELARKLK-----IPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ---HHHHHHHHHHcC-----CcEEEeeCCCCCCHHHHHHHH
Confidence 122334444443 367999999999999998754
No 45
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-19 Score=171.19 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=122.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....+||+|+|..|+|||-|+.||.... .......+.|+.+......++.+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~-----------------------------f~e~~~sTIGVDf~~rt~e~~gk 56 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDT-----------------------------FTESYISTIGVDFKIRTVELDGK 56 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCC-----------------------------cchhhcceeeeEEEEEEeeecce
Confidence 3456899999999999999999997311 11122334567666777778888
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
..+++||||+||++|...+.++++.|+++|+|+|.+.. .+|..+..+..++-.++.. +++ .++|+||+|+.....
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~---~SF~~v~~Wi~Ei~~~~~~-~v~-~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ---ESFNNVKRWIQEIDRYASE-NVP-KLLVGNKCDLTEKRV 131 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH---HHhhhHHHHHHHhhhhccC-CCC-eEEEeeccccHhhee
Confidence 89999999999999999999999999999999999976 4555566666666555443 345 799999999985322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.. .++.+.+...+++. .|+++||+.+.||++.|..++
T Consensus 132 v~----~~~a~~fa~~~~~~----~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 132 VS----TEEAQEFADELGIP----IFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred cC----HHHHHHHHHhcCCc----ceeecccCCccCHHHHHHHHH
Confidence 22 23334555555542 289999999999999997653
No 46
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.81 E-value=2.8e-19 Score=197.72 Aligned_cols=158 Identities=27% Similarity=0.373 Sum_probs=118.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..++++|+|+|++++|||||+++|.+... .....+|+|.......+.+.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-------------------------------~~~e~~GIT~~ig~~~v~~~ 132 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKV-------------------------------AQGEAGGITQHIGAYHVENE 132 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-------------------------------ccccCCceeecceEEEEEEC
Confidence 45778999999999999999999984211 01112466666665556554
Q ss_pred Ce-EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 343 NY-HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~-~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
+. .++|||||||++|..++..++..+|++|+|+|+..+ ...++.+++.++...++| +|+++||+|+....
T Consensus 133 ~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 133 DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 44 899999999999999999999999999999999977 567888888888888888 99999999997432
Q ss_pred chhHHHHHHHHHH---HHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~---~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+ .+.+.+.. ....++ ..++++|+||++|+|+.++++.+
T Consensus 204 ~e---~v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 204 PD---RVKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred HH---HHHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHHHHHhh
Confidence 22 22222221 111121 23578999999999999998765
No 47
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=2.6e-19 Score=165.00 Aligned_cols=155 Identities=26% Similarity=0.345 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC---CCe
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KNY 344 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~---~~~ 344 (519)
.|+|+|++|+|||||+++|+...... ...+++|.......+.. .+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-------------------------------GEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-------------------------------ccCCCeEEeeccEEEecccCCcc
Confidence 59999999999999999998432110 01123444333333333 367
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||+..|...+..++..+|++++|+|++.+ ......+.+..+...+.| +++|+||+|+.....+
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~- 120 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDG--------VMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPE- 120 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEEceecccccHH-
Confidence 899999999999988888888999999999999875 224455556666667776 8999999998743222
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSC--GFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~--g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+...+..+.... .+ ...++++++||++|+|+.++++.+
T Consensus 121 --~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 121 --RVKNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred --HHHHHHHHhhccccccc-cCcCcEEEeecccCCCHHHHHHHH
Confidence 2222332221110 11 124688999999999999998643
No 48
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=1.8e-19 Score=173.22 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CCCeE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~~~~ 345 (519)
+||+|+|.+|+|||||+++|++.... ....++.+.........+. .....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-----------------------------~~~~~t~~~d~~~~~v~~~~~~~~~ 51 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-----------------------------QHYKATIGVDFALKVIEWDPNTVVR 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeEEEEEEEEEECCCCEEE
Confidence 47999999999999999999842110 0011122222223333344 45678
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccc
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~ 422 (519)
+.||||||++.|...+..+++.+|++|+|+|++... +++.+..+..++...+.. ..+ |+|||+||+|+.....
T Consensus 52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~---s~~~~~~~~~~i~~~~~~~~~~~~-piilv~NK~Dl~~~~~ 127 (201)
T cd04107 52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS---TFEAVLKWKADLDSKVTLPNGEPI-PCLLLANKCDLKKRLA 127 (201)
T ss_pred EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhcccCCCCC-cEEEEEECCCcccccc
Confidence 999999999999998889999999999999998762 233222222222222111 233 5999999999973111
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ..+++..+++..++ ..++++||++|.||.++|+.+
T Consensus 128 ~----~~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e~f~~l 163 (201)
T cd04107 128 K----DGEQMDQFCKENGF----IGWFETSAKEGINIEEAMRFL 163 (201)
T ss_pred c----CHHHHHHHHHHcCC----ceEEEEeCCCCCCHHHHHHHH
Confidence 1 13344555555553 468999999999999998765
No 49
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.7e-19 Score=192.45 Aligned_cols=167 Identities=32% Similarity=0.433 Sum_probs=123.9
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+++|+.++|||||+.+|.+. .++....++.+|+|+......+.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~----------------------------~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGV----------------------------WTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCe----------------------------ecccCHhHHhcCcEEEeccccccc
Confidence 3566799999999999999999999631 134455666777877655322111
Q ss_pred --------------C------------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHH
Q 010046 342 --------------K------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 342 --------------~------------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (519)
. ...++|||||||++|...+..++..+|++|+|+|+..+. ...++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~ 129 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-------PQPQTKE 129 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHH
Confidence 0 368999999999999999999999999999999999761 1356677
Q ss_pred HHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
++.++...+.+++|+|+||+|+.. .+......+++..+++... ..+++++++||++|+|+.++++.+.
T Consensus 130 ~l~~l~~~~i~~iiVVlNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~L~~~L~ 197 (411)
T PRK04000 130 HLMALDIIGIKNIVIVQNKIDLVS--KERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDALIEAIE 197 (411)
T ss_pred HHHHHHHcCCCcEEEEEEeecccc--chhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHHHHHHHH
Confidence 777787788777999999999984 2333333445555554321 2346899999999999999987653
No 50
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=2e-19 Score=199.65 Aligned_cols=169 Identities=28% Similarity=0.410 Sum_probs=127.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC---
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~--- 341 (519)
+.+||+|+|++++|||||+++|++..+.+..+.. -.++++....++++|+|+......+.+
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREM----------------REQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccc----------------cccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 4578999999999999999999987766544321 124567777889999998866555533
Q ss_pred --CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 342 --~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
..+.++|||||||.+|...+..++..+|++|||+|++.+ ...++.+++..+...++| +|+|+||+|+..
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~ 136 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPS 136 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCc
Confidence 347899999999999999999999999999999999987 334555555555556776 999999999864
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+.+.+++... +++.. ..++++||++|.||.++++.+
T Consensus 137 ~~---~~~~~~el~~~---lg~~~--~~vi~vSAktG~GI~~Lle~I 175 (595)
T TIGR01393 137 AD---PERVKKEIEEV---IGLDA--SEAILASAKTGIGIEEILEAI 175 (595)
T ss_pred cC---HHHHHHHHHHH---hCCCc--ceEEEeeccCCCCHHHHHHHH
Confidence 32 22333444333 34321 257999999999999998765
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=2.5e-19 Score=191.97 Aligned_cols=180 Identities=22% Similarity=0.205 Sum_probs=133.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~ 221 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDGQ 221 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECCe
Confidence 46899999999999999999999643222 122356777666666667788
Q ss_pred EEEEEeCCCCCcch-----------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010046 345 HVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 345 ~l~LiDTPG~~~f~-----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
.+.||||||+.... .....++..+|++|+|+|+..+ ...+...++.++...+.| +|||+|
T Consensus 222 ~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 222 KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEE
Confidence 89999999965421 2234577889999999999987 445666777777777766 999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL 489 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~ 489 (519)
|+|+. .....+++.+.+...+.... .++++++||++|.||.++++.+......+..++++..+.+.+...
T Consensus 293 K~Dl~--~~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (435)
T PRK00093 293 KWDLV--DEKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEA 362 (435)
T ss_pred CccCC--CHHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHH
Confidence 99998 34445566666665554332 368899999999999999987755444456678888887777554
No 52
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=1.7e-19 Score=168.80 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=103.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
+++.++|+|+|++|+|||||+++|++.... ...++.|... . .+...
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~------------------------------~~~~t~g~~~--~--~~~~~ 56 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID------------------------------TISPTLGFQI--K--TLEYE 56 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC------------------------------CcCCccccce--E--EEEEC
Confidence 345689999999999999999999843110 0011122111 1 12224
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~ 420 (519)
...+.||||||++.+...+..++..+|++|+|+|+.... . +.....++..++.. ....|++||+||+|+...
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---R---LDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 678999999999998888888899999999999998752 1 22222222232221 123459999999998742
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.. .+++...++...+....++++++||++|+|+.++|+.
T Consensus 131 --~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 131 --LS----EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred --CC----HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 12 2233334433333345678999999999999999864
No 53
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.3e-19 Score=189.87 Aligned_cols=156 Identities=28% Similarity=0.392 Sum_probs=126.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
.+++-|.|+||++.|||||+..|-.... ......|+|..+..+.+...
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~V-------------------------------a~~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNV-------------------------------AAGEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcc-------------------------------ccccCCceeeEeeeEEEEecc
Confidence 4567799999999999999999974322 11223688888877777763
Q ss_pred --CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 343 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 --~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
...++|+|||||+.|..++.++...+|++||||++.+| +++|+.+.+.+++..++| +||++||+|+...
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~ 122 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKAAGVP-IVVAINKIDKPEA 122 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHHCCCC-EEEEEecccCCCC
Confidence 46999999999999999999999999999999999998 899999999999999999 9999999999865
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC----CCceEEEeccccCCCcccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~----~~i~~IpvSA~tGegI~el~~~i 466 (519)
++.. ++.+ |...|+.. ..+.|+|+||++|+||.+|...+
T Consensus 123 np~~---v~~e----l~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 123 NPDK---VKQE----LQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred CHHH---HHHH----HHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence 4433 2222 22334332 34789999999999999998754
No 54
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=179.83 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=111.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.--|+|||.||||||||+|+|+|...+++++. +.+|.......+...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~ 52 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTD 52 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcC
Confidence 34566799999999999999999999887776654 222333333334556
Q ss_pred CeEEEEEeCCCCCc--------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 343 NYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 343 ~~~l~LiDTPG~~~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
+.+++|+||||... ........+..+|+++||+|+..+ +......++..++..+.| +|+++||
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--------~~~~d~~il~~lk~~~~p-vil~iNK 123 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--------WGPGDEFILEQLKKTKTP-VILVVNK 123 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--------CCccHHHHHHHHhhcCCC-eEEEEEc
Confidence 88999999999322 445556778889999999999987 455677777777775556 8999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+... ...+..+.+.+. .... ...+||+||++|.|+..|.+.+
T Consensus 124 ID~~~~-~~~l~~~~~~~~---~~~~----f~~ivpiSA~~g~n~~~L~~~i 167 (298)
T COG1159 124 IDKVKP-KTVLLKLIAFLK---KLLP----FKEIVPISALKGDNVDTLLEII 167 (298)
T ss_pred cccCCc-HHHHHHHHHHHH---hhCC----cceEEEeeccccCCHHHHHHHH
Confidence 999853 111222222222 2223 3477999999999999987653
No 55
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.80 E-value=2.2e-19 Score=181.33 Aligned_cols=168 Identities=28% Similarity=0.380 Sum_probs=132.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|++|+|||||+++|++..+.+.+.... . . -.+.+|....++.+|+|+......+.+.+.+++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v--------~-~----~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEV--------H-G----GGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccc--------c-C----CccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 59999999999999999999877755432100 0 1 135678888999999999999999999999999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
||||||+.+|...+..+++.+|++|+|||+..+ ...++..++..+...++| +|+++||+|+.+.. ++.
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~---~~~ 135 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVP-RIAFVNKMDRTGAD---FFR 135 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHH
Confidence 999999999999999999999999999999987 557788888888888887 79999999987432 344
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEeccccC-CCcccccc
Q 010046 428 IKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVTAPD 464 (519)
Q Consensus 428 i~e~l~~~l~~~g~~~~~i~~IpvSA~tG-egI~el~~ 464 (519)
+.++++..+.... ...++|+||..+ .|+.++..
T Consensus 136 ~~~~l~~~l~~~~----~~~~~Pisa~~~f~g~vd~~~ 169 (270)
T cd01886 136 VVEQIREKLGANP----VPLQLPIGEEDDFRGVVDLIE 169 (270)
T ss_pred HHHHHHHHhCCCc----eEEEeccccCCCceEEEEccc
Confidence 5556666554332 235699999854 56666653
No 56
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=4.8e-19 Score=196.30 Aligned_cols=169 Identities=28% Similarity=0.367 Sum_probs=136.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+..+|+|+|++++|||||+++|++..+.+...... -.+.+|....++.+|+|+......+.+.+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 46789999999999999999999766554332100 025688889999999999999999999999
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.++|||||||.+|...+..+++.+|++|||||+..+ ...+++.++..+...++| +|||+||+|+... +
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a---~ 136 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLK-PIVVINKVDRPGA---R 136 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCC-EEEEEECcCCCCC---c
Confidence 999999999999999999999999999999999987 457888888888888888 6899999998743 3
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCceEEEeccccCCCcc
Q 010046 425 FDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLV 460 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~--~~i~~IpvSA~tGegI~ 460 (519)
++.+.+++..++..++... ..++++++||++|.+..
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~ 174 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGL 174 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccC
Confidence 3445555555554444332 34789999999998643
No 57
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.9e-19 Score=179.97 Aligned_cols=169 Identities=35% Similarity=0.576 Sum_probs=145.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++..||+-|||++.|||||.-++..-... .|...+.--...|...+++.+|||+......++.
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~---------------~g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAE---------------KGGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHh---------------ccccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 4567899999999999999999999732111 1112222122356678889999999999999999
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.+--+|+|||.+|..+|+.+..+.|.+|+||.++.| .++|+++|+.++++.+++++++.+||.|+++ +
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d 185 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQVGVKHIVVFINKVDLVD-D 185 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHcCCceEEEEEecccccC-C
Confidence 999999999999999999999999999999999999998 6799999999999999999999999999996 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~ 454 (519)
.+.++...-+++.+|..+||...++++|.-||+
T Consensus 186 ~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 186 PEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 677788888999999999999999999987765
No 58
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.80 E-value=2.1e-19 Score=199.61 Aligned_cols=170 Identities=28% Similarity=0.426 Sum_probs=130.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec---
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~--- 340 (519)
.+.++|+|+||.++|||||+.+|++..+.+..+.. ..+++|....++++|+|+......+.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEc
Confidence 35679999999999999999999987776654321 13567888889999999876555443
Q ss_pred --CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 341 --SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 341 --~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
...+.++|||||||.+|...+..++..+|++|||||++.+ ...++.+.+..+...++| +|+|+||+|+.
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 3468899999999999999999999999999999999987 345666666666666777 99999999986
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+.+.+++... +++.. ..++++||++|.||.++++.+
T Consensus 140 ~a~---~~~v~~ei~~~---lg~~~--~~vi~iSAktG~GI~~Ll~~I 179 (600)
T PRK05433 140 AAD---PERVKQEIEDV---IGIDA--SDAVLVSAKTGIGIEEVLEAI 179 (600)
T ss_pred ccc---HHHHHHHHHHH---hCCCc--ceEEEEecCCCCCHHHHHHHH
Confidence 432 23333444333 34322 257999999999999998765
No 59
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.80 E-value=6.2e-20 Score=186.36 Aligned_cols=268 Identities=25% Similarity=0.345 Sum_probs=192.4
Q ss_pred CCCccccCCCccCCCCCCCcCCcchhhhhhccccccCCCCccccccccccccCCCCcccccCCCCc-CCcccceEEEEEc
Q 010046 195 NHGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKK-GDRMTQLNLAIVG 273 (519)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~s~~v~~~~~~~~~~~~~e~~~~~~~~-~~~~~~ikIvIVG 273 (519)
++|++.++++..+++.+++..+.++.++...+...+..+...-+.++++... ....+.|+++... ....-..+|+|||
T Consensus 62 gcGEtiyeiG~gsdg~~sGLseed~eas~at~~~~ae~I~Adv~klreR~~~-gG~~~~~liRk~~~~~DF~E~RVAVVG 140 (641)
T KOG0463|consen 62 GCGETIYEIGAGSDGPKSGLSEEDLEASAATQLKIAEKIPADVTKLRERKQT-GGGTEVWLIRKPPTEKDFIEARVAVVG 140 (641)
T ss_pred cCCcEEEEecCCCCCCccCCCHHHHHHHHHHHHHHHhhCccHhhhhhhHHhc-CCCeeEEEEeCCCCCccceeEEEEEEe
Confidence 7899999999999999999999999999999888887777665555555443 3446677665544 4567789999999
Q ss_pred CCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEE------------------
Q 010046 274 HVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA------------------ 335 (519)
Q Consensus 274 ~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~------------------ 335 (519)
.++||||||+..|.+... +...-++.. .+..+..+.+.|.|..+.
T Consensus 141 NVDAGKSTLLGVLTHgeL--DnGRG~ARq---------------kLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~ 203 (641)
T KOG0463|consen 141 NVDAGKSTLLGVLTHGEL--DNGRGAARQ---------------KLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDP 203 (641)
T ss_pred cccCCcceeEeeeeeccc--ccCccHHHH---------------HHhhhhhhcccCccccccccceeeccccccccCCCC
Confidence 999999999999985421 111111100 011111222222221110
Q ss_pred ------E-EeecCCCeEEEEEeCCCCCcchhhhhhcccc--CCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC
Q 010046 336 ------V-AYFDSKNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 336 ------~-~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p 406 (519)
. ...+....-++|||.+||+.|...+..++.. .|+.+++|-++.+ +.+.+++|+.++..+.+|
T Consensus 204 Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--------IiGmTKEHLgLALaL~VP 275 (641)
T KOG0463|consen 204 HGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--------IIGMTKEHLGLALALHVP 275 (641)
T ss_pred CCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--------ceeccHHhhhhhhhhcCc
Confidence 0 1122334568999999999999999888865 9999999999988 678999999999999999
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhh
Q 010046 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENF 486 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l 486 (519)
+++|++|||++ ....+++..+.+..+++..|++. +|+-...-+.+.-. + -++
T Consensus 276 -VfvVVTKIDMC--PANiLqEtmKll~rllkS~gcrK-----~PvlVrs~DDVv~~---A-----------------~NF 327 (641)
T KOG0463|consen 276 -VFVVVTKIDMC--PANILQETMKLLTRLLKSPGCRK-----LPVLVRSMDDVVHA---A-----------------VNF 327 (641)
T ss_pred -EEEEEEeeccC--cHHHHHHHHHHHHHHhcCCCccc-----CcEEEecccceEEe---e-----------------ccC
Confidence 99999999999 55788888999999999988765 44444433332221 1 156
Q ss_pred hccccCCCeeeecCCceeEEecccceeeecc
Q 010046 487 RSLYLCPYVTFLNHSTGRCLPVANWRLELFE 517 (519)
Q Consensus 487 ~~~~~~~~~~~~~~~~g~~~p~~~~~~~l~~ 517 (519)
.+.++||+|++++. .|..+|+..|+|+|+.
T Consensus 328 ~Ser~CPIFQvSNV-tG~NL~LLkmFLNlls 357 (641)
T KOG0463|consen 328 PSERVCPIFQVSNV-TGTNLPLLKMFLNLLS 357 (641)
T ss_pred ccccccceEEeccc-cCCChHHHHHHHhhcC
Confidence 77788888888873 2477888888887765
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.80 E-value=5.1e-19 Score=162.40 Aligned_cols=159 Identities=17% Similarity=0.125 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++.... ....+..+.........+......+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 51 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-----------------------------SKYLPTIGIDYGVKKVSVRNKEVRV 51 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------CCCCCccceeEEEEEEEECCeEEEE
Confidence 48999999999999999999843210 0111122222323333444556789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccch
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~e 423 (519)
.||||||++.|...+..++..+|++|+|+|++... .++.+..+..++...... ...+|+|+|+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 128 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ---SFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV 128 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH---HHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccccc
Confidence 99999999999988888899999999999999752 222222233333222221 123459999999998731111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .++...+....+ ++++++||++|+|+.++|+.+
T Consensus 129 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 129 S----EDEGRLWAESKG-----FKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred C----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 1 222223333333 468999999999999998754
No 61
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=2.4e-19 Score=194.55 Aligned_cols=207 Identities=18% Similarity=0.153 Sum_probs=136.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 35899999999999999999999543211 112245555444444555677
Q ss_pred EEEEEeCCCCCc----------chhh-hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010046 345 HVVVLDSPGHKD----------FVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 345 ~l~LiDTPG~~~----------f~~~-~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
.+.||||||+.+ |... ...++..+|++|+|+|++.+. ..+...++..+...+.| +|||+|
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~--------s~~~~~~~~~~~~~~~p-iIiV~N 330 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI--------SEQDQRVLSMVIEAGRA-LVLAFN 330 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 889999999632 1111 123567899999999999873 23344455555556666 999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcc-ccC
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSL-YLC 492 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~-~~~ 492 (519)
|+|+.. ........+++...+.... ..+++++||++|.||.++|+.+......+..++++..|++.+... ...
T Consensus 331 K~Dl~~--~~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~ 404 (472)
T PRK03003 331 KWDLVD--EDRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAAT 404 (472)
T ss_pred CcccCC--hhHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 999974 2222233334443333222 257899999999999999998876666667889999999988774 223
Q ss_pred CCeeeec----CCceeEEecccceeeec
Q 010046 493 PYVTFLN----HSTGRCLPVANWRLELF 516 (519)
Q Consensus 493 ~~~~~~~----~~~g~~~p~~~~~~~l~ 516 (519)
+.+.... -..-+.+...++.+.+|
T Consensus 405 ~~p~~~g~~~k~~y~~q~~~~pp~f~~~ 432 (472)
T PRK03003 405 PPPVRGGKQPRILFATQASTRPPTFVLF 432 (472)
T ss_pred CCCCCCCeeeeEEEEECCCCCCCEEEEE
Confidence 3322221 12223345666677666
No 62
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.3e-19 Score=165.76 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=124.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+..||+++|..++||||||+|+.+.. .......+.|+.+......+...
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~-----------------------------fd~~YqATIGiDFlskt~~l~d~ 69 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDK-----------------------------FDNTYQATIGIDFLSKTMYLEDR 69 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhh-----------------------------hcccccceeeeEEEEEEEEEcCc
Confidence 3455899999999999999999999532 22344555677777777778888
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC--CcEEEEEeecccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~--ppiIVVvNKiDlv~~ 420 (519)
.++++||||+||++|......|++.+.++|+|+|.+.. .++....+|+.......+. .-+++|+||.||...
T Consensus 70 ~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~------~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 70 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR------NSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc------chHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 89999999999999999999999999999999999965 3355677777777777664 236789999999953
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.++. .++-....++++ ..|+.+||+.|.||.++|..++
T Consensus 144 --rqvs--~eEg~~kAkel~-----a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 144 --RQVS--IEEGERKAKELN-----AEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred --hhhh--HHHHHHHHHHhC-----cEEEEecccCCCCHHHHHHHHH
Confidence 3221 222234444444 5789999999999999998754
No 63
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=7.5e-19 Score=170.92 Aligned_cols=163 Identities=25% Similarity=0.375 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee-----cC
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 341 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~-----~~ 341 (519)
++|+|+|++|+|||||+++|++..+.+... ++......+.++....++.+|+++......+ ..
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 369999999999999999999776654321 2223334455677777788888876554443 23
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc--
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-- 419 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~-- 419 (519)
....+.|||||||.+|...+..++..+|++|+|+|+..+ ...+..+++..+...+.| +++|+||+|++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~ 139 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG--------VTSNTERLIRHAILEGLP-IVLVINKIDRLILE 139 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCccc
Confidence 457899999999999999999999999999999999876 223445555556555655 999999999861
Q ss_pred ------ccchhHHHHHHHHHHHHHhcCCCCCCceEEEe
Q 010046 420 ------YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPL 451 (519)
Q Consensus 420 ------~~~e~le~i~e~l~~~l~~~g~~~~~i~~Ipv 451 (519)
.....+.++.+.+..+++.+++.. .+.|+|+
T Consensus 140 ~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~-~~~~~p~ 176 (213)
T cd04167 140 LKLPPNDAYFKLRHIIDEVNNIIASFSTTL-SFLFSPE 176 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEeccC
Confidence 122566777888888888887643 2344444
No 64
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.79 E-value=4.9e-19 Score=162.43 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|||||||+++|+...... . ..++.+. .......+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~---------------------------~~~t~~~-~~~~~~~~~~~~~~l 51 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE--K---------------------------YDPTIED-SYRKQIEVDGQQCML 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--c---------------------------cCCchhh-hEEEEEEECCEEEEE
Confidence 689999999999999999998422100 0 0000010 011122234445678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..+++.+|++|+|+|++... .++.+..+..++.......+. |+|+|+||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~~~~~-- 125 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SFNDLQDLREQILRVKDTENV-PMVLVGNKCDLEDERVVS-- 125 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC-CEEEEEECccccccceec--
Confidence 89999999999998888999999999999998652 222222222222222111234 499999999987422111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+.++ .+++++||++|.|+.++|..+
T Consensus 126 --~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 126 --REEGQALARQWG-----CPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred --HHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHHH
Confidence 122223333333 478999999999999998754
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.79 E-value=5e-19 Score=162.95 Aligned_cols=157 Identities=17% Similarity=0.095 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||+|+|.+|||||||+++|++....... .+..+. .......+......+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~-----------------------------~~t~~~-~~~~~~~~~~~~~~l 50 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY-----------------------------DPTIED-SYRKQIEIDGEVCLL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccc-----------------------------CCchhh-hEEEEEEECCEEEEE
Confidence 37999999999999999999843211000 000000 011122233445688
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..++..+|++|+|+|+.... .++.+..+...+......... |+|+|+||+|+.......
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~-pii~v~nK~Dl~~~~~~~-- 124 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFEEIKKFREQILRVKDRDDV-PIVLVGNKCDLESERVVS-- 124 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC-CEEEEEECccccccceEc--
Confidence 89999999999998888999999999999998752 222222222222222222234 499999999987422111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+..+.+..+ ++++++||++|.|+.++|+.+
T Consensus 125 --~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 125 --TEEGKELARQWG-----CPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred --HHHHHHHHHHcC-----CEEEEeecCCCCCHHHHHHHH
Confidence 122333333333 478999999999999998754
No 66
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.79 E-value=3.4e-19 Score=166.85 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=103.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|...... ...++.|.+.. .+....
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~------------------------------~~~~t~g~~~~----~~~~~~ 52 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV------------------------------TTIPTVGFNVE----TVTYKN 52 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc------------------------------cccCCcccceE----EEEECC
Confidence 34689999999999999999999732110 00111122221 122356
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|||+|++... . +.....++..++... ...|++||+||+|+...
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 125 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---R---IDEARQELHRIINDREMRDALLLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---h---HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC-
Confidence 88999999999999888888899999999999998652 1 333334444444322 22459999999998632
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.. .+++...++........+.++++||++|+|+.++|+.
T Consensus 126 -~~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 126 -MK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred -CC----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 11 2233333322222233457899999999999999863
No 67
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=1.2e-18 Score=167.05 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=107.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..+||+|+|..|+|||||+.+|..... ........+.........+.....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~i~~~~~~~ 55 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-----------------------------ESPYGYNMGIDYKTTTILLDGRRV 55 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCcceeEEEEEEEEECCEEE
Confidence 458999999999999999999983211 001111223333223333455557
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||+++|...+..+++.+|++|||+|++... +++.+..+..++ .......|+|||+||+|+......
T Consensus 56 ~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~---Sf~~~~~w~~~i---~~~~~~~piilVGNK~DL~~~~~v- 128 (189)
T cd04121 56 KLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRW---SFDGIDRWIKEI---DEHAPGVPKILVGNRLHLAFKRQV- 128 (189)
T ss_pred EEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHH---HHhCCCCCEEEEEECccchhccCC-
Confidence 8999999999999999888999999999999999763 333333333333 222233459999999998642111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..++++.+.+..+ +.|+++||++|.||.++|+.+
T Consensus 129 ---~~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 129 ---ATEQAQAYAERNG-----MTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred ---CHHHHHHHHHHcC-----CEEEEecCCCCCCHHHHHHHH
Confidence 1334445555444 478999999999999999755
No 68
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=167.71 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=119.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
+...++|+|+|.+|+|||+|+|++.+... ..+...+.|..+-.....++..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF-----------------------------~~qykaTIgadFltKev~Vd~~ 56 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------------------SQQYKATIGADFLTKEVQVDDR 56 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHH-----------------------------HHHhccccchhheeeEEEEcCe
Confidence 34579999999999999999999984321 0011112333333444556666
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC---CCcEEEEEeeccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~---~ppiIVVvNKiDlv~ 419 (519)
...++||||+|+++|.......++.+|++++|+|++.. .+|+.+..+-.+++.++.... . |+||++||+|+-.
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~---~Sfe~L~~Wr~EFl~qa~~~~Pe~F-PFVilGNKiD~~~ 132 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP---KSFENLENWRKEFLIQASPQDPETF-PFVILGNKIDVDG 132 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh---hhhccHHHHHHHHHHhcCCCCCCcc-cEEEEcccccCCC
Confidence 67889999999999999999999999999999999987 445555555555555443221 2 4999999999864
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
. ..+ ....+..+..++..| ++++|++||+.+.||.+.|..+.
T Consensus 133 ~-~~r-~VS~~~Aq~WC~s~g----nipyfEtSAK~~~NV~~AFe~ia 174 (210)
T KOG0394|consen 133 G-KSR-QVSEKKAQTWCKSKG----NIPYFETSAKEATNVDEAFEEIA 174 (210)
T ss_pred C-ccc-eeeHHHHHHHHHhcC----CceeEEecccccccHHHHHHHHH
Confidence 2 111 223445555555554 78999999999999999998764
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.79 E-value=7.5e-19 Score=160.29 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ...++.+... .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-----------------------------EYDPTIEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-----------------------------CcCCcchheE-EEEEEECCEEEEE
Confidence 689999999999999999998432100 0000111111 1112233344568
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..++..++++++|+|..... .+..+..+..++..+....+. |+|||+||+|+... ..
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~~-~~--- 123 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SFEDIHTYREQIKRVKDSDDV-PMVLVGNKCDLAAR-TV--- 123 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC-CEEEEEECcccccc-ee---
Confidence 89999999999999999999999999999998652 222222222222222212234 49999999998742 11
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+.+..+.+..+ ++++++||++|.|+.++|+.+
T Consensus 124 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 124 -SSRQGQDLAKSYG-----IPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred -cHHHHHHHHHHhC-----CeEEEecCCCCCCHHHHHHHH
Confidence 1223333333333 468999999999999998754
No 70
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=9.3e-19 Score=161.94 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|.+|+|||||+++|++.... .......++........+......
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 53 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-----------------------------ERQGNTIGVDFTMKTLEIEGKRVK 53 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-----------------------------ccCCCccceEEEEEEEEECCEEEE
Confidence 579999999999999999999742110 001112233233333334444468
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccch
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~e 423 (519)
+.||||||++.|...+...++.+|++|+|+|+.... ++. ....++..+... .+. |+|+|+||+|+......
T Consensus 54 l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~~~~ 126 (165)
T cd01864 54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---SFE---SVPHWIEEVEKYGASNV-VLLLIGNKCDLEEQREV 126 (165)
T ss_pred EEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---HHH---hHHHHHHHHHHhCCCCC-cEEEEEECccccccccc
Confidence 899999999999988888899999999999999762 222 222222222221 233 49999999999743221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+....+.+..+. ..++++||++|.|+.++|+.+
T Consensus 127 ~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 127 L----FEEACTLAEKNGM----LAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred C----HHHHHHHHHHcCC----cEEEEEECCCCCCHHHHHHHH
Confidence 1 2233344444332 367999999999999998754
No 71
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=6.8e-19 Score=161.67 Aligned_cols=158 Identities=25% Similarity=0.246 Sum_probs=104.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
+++|+++|.+|+|||||+++|++....+.. ..++.+.......+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS------------------------------DIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc------------------------------CCCCCccCceeeEEEECCee
Confidence 578999999999999999999854221110 01222222222334445667
Q ss_pred EEEEeCCCCCcch-----------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 346 VVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 346 l~LiDTPG~~~f~-----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
+.+|||||+.+.. ......+..+|++|+|+|+..+.. .....+...+...+.| +++|+||
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------~~~~~~~~~~~~~~~~-~iiv~nK 122 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT--------EQDLRIAGLILEEGKA-LVIVVNK 122 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc--------hhHHHHHHHHHhcCCC-EEEEEec
Confidence 8999999975431 122345678999999999987632 2333445555555655 9999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+........+.+.+.+...+... ...+++++||++|+|+.++++.+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l 170 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFL----DYAPIVFISALTGQGVDKLFDAI 170 (174)
T ss_pred cccCCccHHHHHHHHHHHHhhcccc----cCCceEEEeccCCCCHHHHHHHH
Confidence 9998543244555555555554322 23578999999999999998754
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=3.9e-19 Score=169.56 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++...... ....+.+.........+......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 52 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG----------------------------NFIATVGIDFRNKVVTVDGVKVKL 52 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc----------------------------CcCCcccceeEEEEEEECCEEEEE
Confidence 4799999999999999999984321100 001111222222223344455789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||||+++|......+++.+|++|+|+|++... +++.+.. + +..+.... ..|+|||+||+|+.......
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~~~~~---~-~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~ 125 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---SFDNIRA---W-LTEIKEYAQEDVVIMLLGNKADMSGERVVK 125 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---HHHHHHH---H-HHHHHHhCCCCCcEEEEEEcccchhccccC
Confidence 99999999999888888899999999999998652 2222222 2 22222221 23599999999986421111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.++...+.+..+ ++++++||++|.|+.++|..+.
T Consensus 126 ----~~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 126 ----REDGERLAKEYG-----VPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred ----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHHH
Confidence 122333333443 4789999999999999998653
No 73
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.79 E-value=1.9e-18 Score=159.99 Aligned_cols=152 Identities=24% Similarity=0.227 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|+...... ......+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-----------------------------QQLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CcCCceeeEEEEEEEEECCEEEEE
Confidence 579999999999999999998421100 011112223322333445556788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++.|...+..++..+|++|+|+|++...+ +.... .++..+... ...|+|+|+||+|+... .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~-- 120 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT------YKNLS-KWYEELREYRPEIPCIVVANKIDLDPS--V-- 120 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhCCCCcEEEEEECccCchh--H--
Confidence 999999999999999999999999999999987522 21222 222223222 22359999999998521 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+....+ ++++++||++|.|+.++|+.+
T Consensus 121 ---~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l 153 (161)
T cd04124 121 ---TQKKFNFAEKHN-----LPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred ---HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 112223333332 478999999999999998754
No 74
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=9.1e-19 Score=162.37 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|++|+|||||+++|++.... ....++.+.........+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-----------------------------ADCPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCcccceeEEEEEEEECCEEEEE
Confidence 68999999999999999999842110 0011122333333333444555788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++.|...+..+++.+|++|+|+|++... +++.+ ..++..+... ....|+|+|+||+|+.......
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~---~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~- 126 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHL---SSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT- 126 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHhCCCCCeEEEEEECcccccccCcC-
Confidence 99999999999998888999999999999999762 22222 2222222111 1223599999999997432211
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++..+++..+ ++++++||++|+||.++|..+
T Consensus 127 ---~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 127 ---YEEAKQFADENG-----LLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred ---HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 223333444333 478999999999999998644
No 75
>PTZ00369 Ras-like protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=165.93 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=103.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+..+||+|+|.+|+|||||+++|++..... ...++.+.+. .....++...
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 52 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFID-----------------------------EYDPTIEDSY-RKQCVIDEET 52 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcCCchhhEE-EEEEEECCEE
Confidence 456899999999999999999998432100 0011111111 1222344555
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||+++|...+..++..+|++|+|+|++... .++.+..+..++.......+. |+|+|+||+|+.....-
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl~~~~~i 128 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFEEIASFREQILRVKDKDRV-PMILVGNKCDLDSERQV 128 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC-CEEEEEECccccccccc
Confidence 67889999999999999999999999999999999763 222232333333222222234 49999999998632111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .++...+.+.++ ++++++||++|.||.++|..+
T Consensus 129 ~----~~~~~~~~~~~~-----~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 129 S----TGEGQELAKSFG-----IPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred C----HHHHHHHHHHhC-----CEEEEeeCCCCCCHHHHHHHH
Confidence 1 112223333333 478999999999999998754
No 76
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.79 E-value=8.7e-19 Score=161.79 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|||||||+++|+.... .. ...++.+.... ....+......+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~---------------------------~~~~t~~~~~~-~~~~~~~~~~~l 51 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VE---------------------------KYDPTIEDSYR-KQVEVDGQQCML 51 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--Cc---------------------------ccCCcchheEE-EEEEECCEEEEE
Confidence 6899999999999999999983210 00 00011111111 122233445678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||++.|...+..+++.+|++|+|+|.+... +++.+..+..++.......+. |+|||+||+|+........
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~~~~~~~- 126 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TFNDLQDLREQILRVKDTEDV-PMILVGNKCDLEDERVVGK- 126 (164)
T ss_pred EEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCC-CEEEEEECCcchhccEEcH-
Confidence 89999999999999999999999999999998652 222222222222222111234 4999999999974222111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+..+.+.++ ++++++||++|.|+.++|..+
T Consensus 127 ---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 127 ---EQGQNLARQWG-----CAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred ---HHHHHHHHHhC-----CEEEEeeCCCCCCHHHHHHHH
Confidence 12223333333 478999999999999998643
No 77
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=5.6e-19 Score=164.04 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=106.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...+||+|+|.+|+|||||+++|++.... ....+..|.........+....
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 53 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFD-----------------------------TQLFHTIGVEFLNKDLEVDGHF 53 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------cCcCCceeeEEEEEEEEECCeE
Confidence 34689999999999999999999832110 0011122222222333445556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~ 420 (519)
..+.||||||+++|...+..+++.+|++|+|+|..... +++.+..+..++..+... .+. |+|||+||+|+...
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 129 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQ---SFQNLSNWKKEFIYYADVKEPESF-PFVVLGNKNDIPER 129 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccccCCCC-cEEEEEECcccccc
Confidence 78899999999999998888999999999999998763 233333333333333221 223 49999999998621
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+++..+++..++ .+++++||++|.|+.++|+.+
T Consensus 130 -~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 130 -QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred -ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHHHHHHH
Confidence 111 2334445555442 368999999999999998754
No 78
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=2.8e-19 Score=187.70 Aligned_cols=149 Identities=25% Similarity=0.312 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+.|+|||.||+|||||+|||++...+++... +|+|.+..+....+.+..|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 6799999999999999999997766655443 8999999998899999999
Q ss_pred EEEeCCCCCc---------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 347 ~LiDTPG~~~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
.+|||+|.+. .......++..||++|||||+..| +.....++..+++..+.| +|+|+||+|-
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 9999999653 223345677889999999999998 668899999999965566 9999999997
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
... +.....+-.+|+.++ +|+||.+|.|+.+|.+++.
T Consensus 125 ~~~---------e~~~~efyslG~g~~----~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 125 LKA---------EELAYEFYSLGFGEP----VPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred chh---------hhhHHHHHhcCCCCc----eEeehhhccCHHHHHHHHH
Confidence 622 222333456788665 9999999999999988763
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.78 E-value=2e-18 Score=158.36 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--CCCe
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~--~~~~ 344 (519)
+||+|+|.+|+|||||+++|++..... ...++.+.........+. ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-----------------------------DYKKTIGVDFLEKQIFLRQSDEDV 51 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcEEEEEEEEEEEEcCCCCEE
Confidence 479999999999999999998421100 001112222211222233 4457
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||+++|...+..+++.+|++++|+|+.... ++. ....++..+.......|+|+|+||+|+.......
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~---~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~ 125 (162)
T cd04106 52 RLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---SFE---AIESWKEKVEAECGDIPMVLVQTKIDLLDQAVIT 125 (162)
T ss_pred EEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCEEEEEEChhcccccCCC
Confidence 8999999999999998889999999999999998752 222 2222222222222233499999999997432211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+.+..+ ++++++||++|.|+.+++..+
T Consensus 126 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 126 ----NEEAEALAKRLQ-----LPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred ----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 133344444444 368999999999999998643
No 80
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=1e-18 Score=163.72 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=102.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec----
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---- 340 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~---- 340 (519)
..+||+|+|.+|+|||||+++|.+..... ....+.+.........+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 53 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP-----------------------------KFITTVGIDFREKRVVYNSSGP 53 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------cCCCccceEEEEEEEEEcCccc
Confidence 34899999999999999999998431100 001111211111111111
Q ss_pred ------CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 341 ------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 341 ------~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
.....+.||||||+++|...+..+++.+|++|+|+|++... ++..+..+..++..... ...+|+++|+||
T Consensus 54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~-~~~~piiiv~nK 129 (180)
T cd04127 54 GGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---SFLNVRNWMSQLQTHAY-CENPDIVLCGNK 129 (180)
T ss_pred cccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcC-CCCCcEEEEEeC
Confidence 23467899999999999998899999999999999998652 22222222222211111 123569999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+....... .+++..+.+..+ ++++++||++|.|+.++|+.+
T Consensus 130 ~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 130 ADLEDQRQVS----EEQAKALADKYG-----IPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred ccchhcCccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 9997432211 223344444444 468999999999999998754
No 81
>PLN03118 Rab family protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=168.60 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=104.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...+||+|+|.+|+|||||+++|++.... ...+..+.........+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE------------------------------DLAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------------CcCCCceeEEEEEEEEECCEE
Confidence 34689999999999999999999843210 111223333333334444455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhCCCcEEEEEeecccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||+++|...+..+++.+|++|||+|++... .++.+.......+.... .... |+|||+||+|+.....
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~---sf~~~~~~~~~~~~~~~~~~~~-~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE---TFTNLSDVWGKEVELYSTNQDC-VKMLVGNKVDRESERD 137 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccccccCc
Confidence 78999999999999998889999999999999999752 22222111111111111 1233 4899999999874222
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.. .+....+....+ +.||++||++|.|+.++|+.+.
T Consensus 138 i~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l~~~l~ 173 (211)
T PLN03118 138 VS----REEGMALAKEHG-----CLFLECSAKTRENVEQCFEELA 173 (211)
T ss_pred cC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHHH
Confidence 11 122233333333 4789999999999999997653
No 82
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.78 E-value=2.5e-18 Score=159.49 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ...++.|+...............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-----------------------------AFVSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 689999999999999999998422100 011112222222222233345689
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||||++++...+..+++.+|++|+|+|++... .++.+..+ +..+... ..+|++||+||+|+.......
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~~~~~~~----~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 125 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDW----STQIKTYSWDNAQVILVGNKCDMEDERVVS 125 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HHHHHHHH----HHHHHHhCCCCCCEEEEEECcccCcccccC
Confidence 99999999999988889999999999999998652 22222222 2222222 234599999999997432211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+..+ ++++++||++|.|+.++|+.+
T Consensus 126 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l 158 (165)
T cd01865 126 ----SERGRQLADQLG-----FEFFEASAKENINVKQVFERL 158 (165)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 122233334444 368999999999999998754
No 83
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=8.1e-19 Score=162.56 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+++|..|+|||||+++|...... . ..++.|..+. .+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~----------------------------~~pt~g~~~~----~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--T----------------------------TIPTIGFNVE----TVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c----------------------------cCCCCCcceE----EEEECCEEE
Confidence 47999999999999999999621110 0 0011122111 123356889
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||||+++|...+..+++.+|++|||+|++... . +.....++..++.. ...+|++||+||+|+... ..
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---R---IGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MS 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---H---HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CC
Confidence 99999999999988888999999999999998642 1 33333334444332 223569999999998632 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.+++. ..+....+....+.++++||++|+||.++|+.
T Consensus 119 ~~~i~----~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 119 AAEVT----DKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred HHHHH----HHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 12222 22211222334567789999999999999763
No 84
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.78 E-value=1.4e-18 Score=168.28 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+.|+|+|..|||||||+++|+.... ......+.+.........+......+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-----------------------------~~~~~~Ti~~~~~~~~i~~~~~~v~l 51 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-----------------------------CEACKSGVGVDFKIKTVELRGKKIRL 51 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-----------------------------CCcCCCcceeEEEEEEEEECCEEEEE
Confidence 3699999999999999999983211 00111222333333333444455788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||+|+++|...+..+++.+|++|+|+|++... +++.+..+. ..+... ...|+|||+||+|+.......
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~---Sf~~l~~w~----~~i~~~~~~~~piilVgNK~DL~~~~~v~ 124 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFDDLPKWM----KMIDKYASEDAELLLVGNKLDCETDREIS 124 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHH----HHHHHhCCCCCcEEEEEECcccccccccC
Confidence 99999999999999999999999999999999763 333332222 223222 224599999999986421111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+.. .++.|+++||++|.||.++|..+
T Consensus 125 ----~~~~~~~a~~~----~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 125 ----RQQGEKFAQQI----TGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ----HHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHH
Confidence 12223333332 12478999999999999999754
No 85
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=8.4e-19 Score=173.95 Aligned_cols=130 Identities=38% Similarity=0.546 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|++|+|||||+++|++..+.+.+.... .. + .+.++....++.+|+++......+.+.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v--------~~-~----~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSV--------DK-G----TTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccc--------cC-C----cccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 58999999999999999999877765442200 00 1 13466667788899999999899999999999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
||||||+.+|...+..+++.+|++|+|+|+..+ ...++..+..++...++| +|+++||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 999999999999999999999999999999987 446777888888888887 899999999874
No 86
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.78 E-value=2.8e-18 Score=158.66 Aligned_cols=156 Identities=18% Similarity=0.159 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|.+|+|||||+++|++..... ......++........+......
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-----------------------------SYISTIGVDFKIRTIELDGKTIK 52 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 3689999999999999999998421100 01111222222233334444567
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccch
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e 423 (519)
+.||||||+++|...+..+++.+|++|+|+|++... ++ .....+ +..+... ...|+|+|+||+|+......
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~---~~l~~~-~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~ 125 (166)
T cd01869 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQW-LQEIDRYASENVNKLLVGNKCDLTDKRVV 125 (166)
T ss_pred EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HH---HhHHHH-HHHHHHhCCCCCcEEEEEEChhcccccCC
Confidence 899999999999988888999999999999998652 22 222222 2222222 22359999999998643221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .++...+.+..+ ++++++||++|+|+.++|..+
T Consensus 126 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 126 D----YSEAQEFADELG-----IPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred C----HHHHHHHHHHcC-----CeEEEEECCCCcCHHHHHHHH
Confidence 1 122333433333 478999999999999998754
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.78 E-value=2.8e-18 Score=157.32 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEE--EEEeecCCCe
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--AVAYFDSKNY 344 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~--~~~~~~~~~~ 344 (519)
.||+|+|++|+|||||+++|++..... ...++.+.+. ....+.....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-------------------------------QYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-------------------------------cCCCceeeeEEEEEEEECCEEE
Confidence 379999999999999999998432211 1112222222 2223333345
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccccch
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~~~e 423 (519)
.+.||||||+..+...+...+..+|++|+|+|++...+ +.....++..+....+ ..|+++|+||+|+......
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~ 123 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS------FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV 123 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH------HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc
Confidence 78999999999999888889999999999999986521 3333333333333333 1349999999999632221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .++...+.+..+ +.++++||++|.|+.++++.+
T Consensus 124 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 124 S----TEEGEKKAKELN-----AMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred C----HHHHHHHHHHhC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 2 222233333333 578999999999999998754
No 88
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.78 E-value=1.8e-18 Score=160.78 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|.+|+|||||+++|++..... ...+..++........+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 53 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-----------------------------SFISTIGIDFKIRTIELDGKKIK 53 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-----------------------------ccccCccceEEEEEEEECCEEEE
Confidence 4799999999999999999998432100 01112233332223334444568
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||++.+.......++.+|++|+|+|++.+. .+. ....++..+.... ...|+|||+||+|+.......
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~ 127 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFE---NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS 127 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH---hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC
Confidence 899999999999888888899999999999998652 222 2222222222211 223599999999997422222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. +++..+++..+ .+++++||++|.|+.++|+.+
T Consensus 128 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 128 K----EEGEALADEYG-----IKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred H----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 2 22333443333 478999999999999998754
No 89
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.78 E-value=2.3e-18 Score=161.49 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+++|..|+|||||+++|++.... ....++.+.........+......+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l~ 52 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-----------------------------KNYKATIGVDFEMERFEILGVPFSLQ 52 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEEE
Confidence 6999999999999999999842110 00111222222223333444457899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchhH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~l 425 (519)
||||||+++|...+..+++.+|++|+|+|++... . +.....++..+.... ..+|+|+|+||+|+.... ..
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~--~~ 124 (170)
T cd04108 53 LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---S---LEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA--QY 124 (170)
T ss_pred EEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---H---HHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--cc
Confidence 9999999999999999999999999999998642 1 222333332333322 224589999999986321 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+....+.+..+ .+++++||++|.|+.++|..+
T Consensus 125 ~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 125 ALMEQDAIKLAAEMQ-----AEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred cccHHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 112233334444433 367999999999999998754
No 90
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.78 E-value=6.8e-19 Score=197.73 Aligned_cols=159 Identities=31% Similarity=0.419 Sum_probs=117.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-- 340 (519)
..++++|+|+|++++|||||+++|.+..... ...+|+|.......+.
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-------------------------------~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-------------------------------KEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-------------------------------ccCCccccccceEEEEEE
Confidence 4678899999999999999999998432211 1113444433222222
Q ss_pred --CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 341 --SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 341 --~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
..+..++|||||||+.|..++..++..+|++|||||+..+ ...++.+++..+...++| +|||+||+|+.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 2458899999999999999999999999999999999977 456788888888888887 99999999997
Q ss_pred cccchhHHHHHHHHHHH---HHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 419 QYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~---l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
... ++.+.+.+..+ ...++ ..++++++||++|.||.++++.+.
T Consensus 361 ~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 361 NAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred ccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHHHHHhhh
Confidence 532 23333333221 12222 246899999999999999988653
No 91
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.78 E-value=1.6e-18 Score=159.61 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||++++++..... . ...+.+ ........+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~---------------------------~~~t~~-~~~~~~~~~~~~~~~l 51 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--K---------------------------YDPTIE-DFYRKEIEVDSSPSVL 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--C---------------------------CCCchh-heEEEEEEECCEEEEE
Confidence 689999999999999999998421100 0 000000 0111222233444578
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..+++.+|++|+|+|.+... ++..+..+..++.......+.| ++||+||+|+........
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~- 126 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---TFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSS- 126 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCH-
Confidence 89999999999999888999999999999998752 2222222222222221113444 999999999864211111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.....+.+..+ ++++++||++|.|+.++|..+
T Consensus 127 ---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 127 ---AEGRALAEEWG-----CPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred ---HHHHHHHHHhC-----CEEEEecCCCCCCHHHHHHHH
Confidence 12222333333 478999999999999998644
No 92
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=1.7e-18 Score=174.68 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|||||||+|+|++....+.... +++|...........+.+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~------------------------------~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPK------------------------------AQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCC------------------------------CCcccCcEEEEEEcCCcEEE
Confidence 599999999999999999996543322211 22222211122233456799
Q ss_pred EEeCCCCCcc--------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 348 VLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 348 LiDTPG~~~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
||||||+... ...+..++..+|++++|+|++.... .. ..++..+...+.| +|+|+||+|+..
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~ 121 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DG-EFVLTKLQNLKRP-VVLTRNKLDNKF 121 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hH-HHHHHHHHhcCCC-EEEEEECeeCCC
Confidence 9999996542 2234567788999999999987521 11 4445555556666 999999999973
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... +...+..+....++ .+++++||++|.|+.++++.+
T Consensus 122 --~~~---~~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~L~~~l 159 (270)
T TIGR00436 122 --KDK---LLPLIDKYAILEDF----KDIVPISALTGDNTSFLAAFI 159 (270)
T ss_pred --HHH---HHHHHHHHHhhcCC----CceEEEecCCCCCHHHHHHHH
Confidence 222 22333333333332 267999999999999998754
No 93
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.77 E-value=7.9e-19 Score=160.87 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|||||||+++|.+..... ....++.|.... .+......+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~----------------------------~~~~~t~g~~~~----~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS----------------------------QIIVPTVGFNVE----SFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc----------------------------ceecCccccceE----EEEECCEEEE
Confidence 58999999999999999998421100 001111222211 1234578899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-----hCCCcEEEEEeecccccccc
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~~ppiIVVvNKiDlv~~~~ 422 (519)
||||||+++|...+..++..+|++|||+|++... . +.....++..++.. .++| ++||+||+|+...
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~-- 119 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL---R---LVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDA-- 119 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH---H---HHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCC--
Confidence 9999999999998889999999999999998652 1 11112222222221 2344 9999999998742
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
...++ +...+....+....+.++++||++|+|+.++|+.
T Consensus 120 ~~~~~----~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~ 158 (162)
T cd04157 120 LTAVK----ITQLLGLENIKDKPWHIFASNALTGEGLDEGVQW 158 (162)
T ss_pred CCHHH----HHHHhCCccccCceEEEEEeeCCCCCchHHHHHH
Confidence 11122 2222211111222356899999999999999864
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=1.4e-18 Score=164.97 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=103.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+++|..|+|||||+++|...... ...++.|... ..++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~------------------------------~~~pt~g~~~----~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIPTIGFNV----ETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc------------------------------cccCCcceeE----EEEEECC
Confidence 45689999999999999999999731100 0111122222 1234467
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++.|...+..+++.+|++|||+|++... .+.....++..++.. ....|++||+||+|+...
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~------s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~- 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA- 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH------HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-
Confidence 88999999999999999899999999999999999652 122333333333322 223459999999998642
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
... +++...+.-..+....+.++++||++|+||.++|+.
T Consensus 134 -~~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 172 (181)
T PLN00223 134 -MNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
T ss_pred -CCH----HHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHH
Confidence 112 233333322222233456779999999999999863
No 95
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.77 E-value=2.5e-18 Score=161.58 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|..|+|||||+++|++..... ...++.+... .....+......
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~ 51 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD-----------------------------YHDPTIEDAY-KQQARIDNEPAL 51 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC-----------------------------CcCCcccceE-EEEEEECCEEEE
Confidence 4689999999999999999998422100 0001111111 111233444567
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||||+++|...+..++..+|++|+|+|+++.. ++..+..+...+.......++ |+|||+||+|+.....-.
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~---Sf~~~~~~~~~i~~~~~~~~~-piilvgNK~Dl~~~~~v~- 126 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH---SFQEASEFKKLITRVRLTEDI-PLVLVGNKVDLESQRQVT- 126 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh---HHHHHHHHHHHHHHhcCCCCC-CEEEEEEChhhhhcCccC-
Confidence 899999999999999989999999999999999763 232222221112111111234 599999999986421111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+.+..+ ++++++||++|.||.++|+.+
T Consensus 127 ---~~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 127 ---TEEGRNLAREFN-----CPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred ---HHHHHHHHHHhC-----CEEEEEecCCCCCHHHHHHHH
Confidence 122333444433 478999999999999998744
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.77 E-value=1.6e-18 Score=163.14 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=101.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+++|..|+|||||+++|...... ...++.|..+ ..+....
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~------------------------------~~~~t~~~~~----~~~~~~~ 56 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV------------------------------TTIPTIGFNV----ETVTYKN 56 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CcCCccccce----EEEEECC
Confidence 34689999999999999999999621100 0011112211 1123356
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+..+...+..+++.+|++|||+|++... .+.....++..++.. ....|++||+||+|+....
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD------RIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH------HHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 88999999999999998888999999999999998652 122333333333332 1234599999999986421
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
..+++. ..+.........+.++++||++|+|+.++|+.
T Consensus 131 --~~~~i~----~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 131 --KAAEIT----EKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred --CHHHHH----HHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 112222 22221222234456789999999999999763
No 97
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.9e-18 Score=182.80 Aligned_cols=162 Identities=27% Similarity=0.336 Sum_probs=127.4
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
...+++-|.|+||++.|||||+.+|.....+. ....|||..+..+.+..
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-------------------------------~E~GGITQhIGAF~V~~ 197 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-------------------------------GEAGGITQHIGAFTVTL 197 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceeh-------------------------------hhcCCccceeceEEEec
Confidence 34578899999999999999999997433211 11257776665554433
Q ss_pred -CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 342 -KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 342 -~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
.+..++|+|||||..|..++.+++..+|++||||.+..| +++|+.+.+++++..++| +||++||+|..++
T Consensus 198 p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG--------VmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a 268 (683)
T KOG1145|consen 198 PSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG--------VMPQTLEAIKHAKSANVP-IVVAINKIDKPGA 268 (683)
T ss_pred CCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC--------ccHhHHHHHHHHHhcCCC-EEEEEeccCCCCC
Confidence 568999999999999999999999999999999999988 889999999999999999 9999999998866
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+....-.-...-.+..+| .+++++|+||++|+|++.|.+++
T Consensus 269 ~pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 269 NPEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDLLEEAI 311 (683)
T ss_pred CHHHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHHHHHHH
Confidence 55443222222222344444 46899999999999999987654
No 98
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=2.3e-18 Score=179.40 Aligned_cols=164 Identities=23% Similarity=0.291 Sum_probs=107.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|.+|||||||+|+|++....+..+ ..+.|.......+...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~------------------------------k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP------------------------------KVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccC------------------------------CCCCccCcEEEEEEeCC
Confidence 456799999999999999999999643322111 12233333333344567
Q ss_pred eEEEEEeCCCCCcc--------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 344 YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~~l~LiDTPG~~~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.+++||||||+... ......++..+|++|||+|+..+ +......++..+...+.| .|+|+||+
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--------~~~~~~~il~~l~~~~~p-~IlViNKi 170 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--------FDDITHNILDKLRSLNIV-PIFLLNKI 170 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 78999999997432 22223457889999999998765 334445566666666666 57899999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc----Cccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR----GPVYWMQL 476 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~----~~w~~~~~ 476 (519)
|+... .+. .+...+...+ ....+||+||++|.|+.++++.+.. ..|+..+.
T Consensus 171 Dl~~~---~~~----~~~~~l~~~~---~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~ 225 (339)
T PRK15494 171 DIESK---YLN----DIKAFLTENH---PDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAED 225 (339)
T ss_pred cCccc---cHH----HHHHHHHhcC---CCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCC
Confidence 98632 222 2333333322 2347899999999999999875432 34655443
No 99
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=4.9e-18 Score=163.27 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=104.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|+|||||+++|++.... ....++.++........+......
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 56 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS-----------------------------GSYITTIGVDFKIRTVEINGERVK 56 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCcCccccceeEEEEEEECCEEEE
Confidence 589999999999999999999842110 001112233332233333344467
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||||++.|...+..++..++++|+|+|++... + +.....++..+.......|++||+||+|+.......
T Consensus 57 l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s---~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~- 129 (199)
T cd04110 57 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---S---FVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE- 129 (199)
T ss_pred EEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---H---HHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC-
Confidence 899999999999998889999999999999998752 2 222222222222323344599999999987422111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+..+ +.++++||++|.||.++|+.+
T Consensus 130 ---~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 130 ---TEDAYKFAGQMG-----ISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred ---HHHHHHHHHHcC-----CEEEEEECCCCcCHHHHHHHH
Confidence 223333444433 478999999999999999765
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.77 E-value=5e-18 Score=157.08 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|++|+|||||+++|++..... ......+.........+......+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------------QYKATIGADFLTKEVTVDDKLVTL 51 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcCCccceEEEEEEEEECCEEEEE
Confidence 479999999999999999998432100 000111222222222333344678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-----CCcEEEEEeeccccccc
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----VDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-----~ppiIVVvNKiDlv~~~ 421 (519)
.||||||++.|......+++.+|++|+|+|+.... .+ .....+...++.... ..|+++|+||+|+....
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 125 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK---SF---ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR 125 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc
Confidence 89999999999988888999999999999998762 12 222222222222221 23499999999997422
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+.+..+++..+ ..+++++||++|.|+.+++..+
T Consensus 126 ~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~l~~~i 162 (172)
T cd01862 126 QVS----TKKAQQWCQSNG----NIPYFETSAKEAINVEQAFETI 162 (172)
T ss_pred ccC----HHHHHHHHHHcC----CceEEEEECCCCCCHHHHHHHH
Confidence 111 223334444444 2578999999999999998754
No 101
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=1.3e-18 Score=159.94 Aligned_cols=153 Identities=22% Similarity=0.158 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|++++|||||+++|....... ..++.+... ..+......+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT------------------------------TIPTIGFNV----ETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC------------------------------cCCccCcCe----EEEEECCEEEE
Confidence 58999999999999999996321100 001111111 12334567899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchhH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~l 425 (519)
||||||+..|...+..++..+|++|+|+|++... .+.....++..++... ...|++||+||+|+.... ..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~ 118 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD------RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SE 118 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CH
Confidence 9999999999988888999999999999998641 1222223333333322 224599999999987421 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++. ..+........+.+++++||++|.|+.++++.+
T Consensus 119 ~~i~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 119 AEIS----EKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred HHHH----HHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 2222 222111222234579999999999999998744
No 102
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.77 E-value=3.4e-18 Score=158.53 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ...++.+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-----------------------------SYIPTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CcCCcchheE-EEEEEECCEEEEE
Confidence 689999999999999999998422100 0000111111 1122334455788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-----CCCcEEEEEeeccccccc
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~~ppiIVVvNKiDlv~~~ 421 (519)
.||||||+++|......++..++++|+|+|.+... .++.+ ..++..+... ...|+|||+||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~----~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ---SLEEL----KPIYELICEIKGNNIEKIPIMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH---HHHHH----HHHHHHHHHHhcCCCCCCCEEEEEECccccccC
Confidence 99999999999988888889999999999999763 22212 2222222221 223499999999996421
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+....+.... ++.++++||++|+||.++|+.+
T Consensus 125 ~v~----~~~~~~~~~~~-----~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 125 EVS----SNEGAACATEW-----NCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred eec----HHHHHHHHHHh-----CCcEEEeecCCCCCHHHHHHHH
Confidence 111 11222222222 2478999999999999998754
No 103
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.77 E-value=3.4e-18 Score=166.43 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-CCeE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-~~~~ 345 (519)
+||+|+|.+|+|||||+++|++.... ....++.+.........+.. ....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-----------------------------~~~~~T~~~d~~~~~i~~~~~~~~~ 51 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-----------------------------KSYKQTIGLDFFSKRVTLPGNLNVT 51 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeEEEEEEEEEeCCCCEEE
Confidence 47999999999999999999842110 01111122222222223322 3578
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||++.|...+..+++.+|++|||+|++... +++.+..+...+...... ...+|+|+|+||+|+......
T Consensus 52 ~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v- 127 (215)
T cd04109 52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---SFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV- 127 (215)
T ss_pred EEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc-
Confidence 999999999999988888999999999999999762 222222222222222211 122458999999999732111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
..+....+.+..+ ++++++||++|+||.++|+.+.
T Consensus 128 ---~~~~~~~~~~~~~-----~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 128 ---KDDKHARFAQANG-----MESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred ---CHHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHHH
Confidence 1223344444444 4679999999999999998653
No 104
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.77 E-value=5.4e-18 Score=156.45 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||+++|++..... ...+..+.+.......+......+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 54 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-----------------------------DSKSTIGVEFATRSIQIDGKTIKA 54 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceEEEEEEEEECCEEEEE
Confidence 689999999999999999998432110 011122333333333344444678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++.+......++..++++|+|+|++... .+. ....++..+..... ..|++||+||+|+.......
T Consensus 55 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~- 127 (165)
T cd01868 55 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TFE---NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP- 127 (165)
T ss_pred EEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCeEEEEEECccccccccCC-
Confidence 99999999999888888899999999999998652 222 22222222222221 24599999999987432211
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++..+....+ +.++++||++|.|+.++++.+
T Consensus 128 ---~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 128 ---TEEAKAFAEKNG-----LSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred ---HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 223333433332 478999999999999998754
No 105
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=2e-18 Score=162.13 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
..+|+++|.+|+|||||+++|+...... ..++.+.+. ..+......
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH------------------------------TSPTIGSNV----EEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC------------------------------cCCccccce----EEEEECCeE
Confidence 5789999999999999999998321100 011112111 123345688
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccch
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e 423 (519)
+.||||||+..|...+..++..+|++|||+|++... .+.....++..++... ...|++||+||+|+... .
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~------~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~ 132 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE------RLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--M 132 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--C
Confidence 999999999999888888899999999999998652 1223333344443322 22459999999998642 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+++.+. +....+...+++++++||++|+||.++|+.+
T Consensus 133 ~~~~i~~~----l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 133 TPAEISES----LGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CHHHHHHH----hCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 12222222 2111122234678999999999999998643
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.77 E-value=3.1e-18 Score=157.23 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ...+..+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 489999999999999999998432110 011223333333333344455789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||++.+.......++.+|++|+|+|++...+ +..+..+...+..+....+. |+++|+||+|+.... ..
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~-~~~iv~nK~D~~~~~-~~-- 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FTNLETWLNELETYSTNNDI-VKMLVGNKIDKENRE-VT-- 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HHhHHHHHHHHHHhCCCCCC-cEEEEEECCcccccc-cC--
Confidence 999999999998888888899999999999986522 22121222222222222334 489999999997321 11
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+..+ ++++++||++|+|+.++++.+
T Consensus 125 --~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 125 --REEGLKFARKHN-----MLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred --HHHHHHHHHHcC-----CEEEEEecCCCCCHHHHHHHH
Confidence 122333333333 478999999999999998653
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.77 E-value=2.9e-18 Score=162.58 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=102.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee-cCCC
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKN 343 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~-~~~~ 343 (519)
+.++|+++|.+|+|||||+++|++.... ...++.|.......... ....
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 51 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV------------------------------NTVPTKGFNTEKIKVSLGNSKG 51 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC------------------------------CcCCccccceeEEEeeccCCCc
Confidence 4688999999999999999999842210 00111222221111111 3356
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++.|...+..++..+|++|+|+|++... .+.....+..++.......+.| +|||+||+|+... .
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~--~ 125 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA--L 125 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc--C
Confidence 78999999999999888888899999999999998652 1221222223333333334455 9999999998632 1
Q ss_pred hHHHHHHHHHHHHHhcCCC-CCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~-~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. +.+..++....+. ...+.++++||++|+||.+++..+
T Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l 165 (183)
T cd04152 126 SV----SEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKL 165 (183)
T ss_pred CH----HHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHH
Confidence 11 2222222211111 123568999999999999998754
No 108
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.77 E-value=6.3e-18 Score=157.38 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ......|.+.......+......+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 55 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDGKQIKL 55 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 789999999999999999998432100 111123444433444455555689
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||||+++|......+++.+|++|+|+|++... + +..... ++..++.. ...|+|||+||+|+.......
T Consensus 56 ~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s---~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 128 (168)
T cd01866 56 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---T---FNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESRREVS 128 (168)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---H---HHHHHH-HHHHHHHhCCCCCcEEEEEECcccccccCCC
Confidence 99999999999888888999999999999998652 2 222222 22222221 223599999999987422211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+++..+ +.++++||++|+||.++|..+
T Consensus 129 ----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 129 ----YEEGEAFAKEHG-----LIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 223334444443 478999999999999998643
No 109
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.3e-18 Score=181.66 Aligned_cols=171 Identities=29% Similarity=0.448 Sum_probs=142.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-- 340 (519)
..+.+|+.||.|.+.|||||..||+..++.+..+.+. ..++|....++++|+|+......+.
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Yk 69 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNYK 69 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEEE
Confidence 3457789999999999999999999988888777654 3568889999999999865544333
Q ss_pred ---CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 341 ---SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 341 ---~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
.+.+.++|||||||.+|.-+..+.+..|..++|||||++| +.+|+....-++-..+.. +|-|+||+||
T Consensus 70 ~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG--------veAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 70 AKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred eCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc--------hHHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3568999999999999999999999999999999999999 788999888888888888 9999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..++.+ .++++++.. .|+... ..+.+||++|.||.++++++
T Consensus 141 P~Adpe---rvk~eIe~~---iGid~~--dav~~SAKtG~gI~~iLe~I 181 (603)
T COG0481 141 PAADPE---RVKQEIEDI---IGIDAS--DAVLVSAKTGIGIEDVLEAI 181 (603)
T ss_pred CCCCHH---HHHHHHHHH---hCCCcc--hheeEecccCCCHHHHHHHH
Confidence 866554 456666665 366554 34999999999999998765
No 110
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=6.4e-18 Score=159.51 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=102.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
+.+.++|+|+|.+|+|||||+|+|++..... ......+.|........+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~-- 63 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGRTQLINFFEVN-- 63 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------cccCCCCcceEEEEEEeC--
Confidence 3567899999999999999999998532100 011123444444333332
Q ss_pred CeEEEEEeCCCCCc----------chhhhhhcc---ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE
Q 010046 343 NYHVVVLDSPGHKD----------FVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (519)
Q Consensus 343 ~~~l~LiDTPG~~~----------f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI 409 (519)
..+.||||||+.. +...+..++ ..++++|+|+|+..+ +.....+++.++...+.| ++
T Consensus 64 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-vi 133 (179)
T TIGR03598 64 -DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VL 133 (179)
T ss_pred -CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EE
Confidence 3799999999532 222222333 346899999999876 334555566667667766 99
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcc
Q 010046 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~ 460 (519)
+|+||+|+.. ....+...++++..++..+ .++.+|++||++|+|++
T Consensus 134 iv~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 134 IVLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCCC
Confidence 9999999973 3445556677777776654 23478999999999984
No 111
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.77 E-value=5.2e-18 Score=155.94 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ...+..+.........+......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l 51 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-----------------------------DSQHTIGVEFGSKIIRVGGKRVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCceeeeEEEEEEEECCEEEEE
Confidence 489999999999999999998432111 011112222222333444445688
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHH--HHHhCCCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l--l~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||||++.|...+..+++.+|++|+|+|++...+ +.....++..+ +...+. |++||+||+|+.......
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~~~~~ 124 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS------FEALPTWLSDARALASPNI-VVILVGNKSDLADQREVT 124 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCC-eEEEEEEchhcchhccCC
Confidence 999999999999888889999999999999997632 22222222211 112234 499999999997422111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++..+++..+ +.++++||++|.|+.++|..+
T Consensus 125 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 125 ----FLEASRFAQENG-----LLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 223334444443 478999999999999998754
No 112
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=3.5e-18 Score=164.79 Aligned_cols=168 Identities=16% Similarity=0.135 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|||||||+++|++..... ...+..+.........+......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-----------------------------~~~pt~~~~~~~~~i~~~~~~~~l 51 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-----------------------------EYIPTEHRRLYRPAVVLSGRVYDL 51 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-----------------------------ccCCccccccceeEEEECCEEEEE
Confidence 479999999999999999998422100 000111111111122234444678
Q ss_pred EEEeCCCCCcchhh--------hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhCCCcEEEEEeeccc
Q 010046 347 VVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDA 417 (519)
Q Consensus 347 ~LiDTPG~~~f~~~--------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~~ppiIVVvNKiDl 417 (519)
.||||||+..|... ...++..+|++|||+|++... +++.+..+..++..... .....|+|||+||+|+
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---SFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 99999997654211 234578899999999999762 22222222222222221 0122459999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWM 474 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~ 474 (519)
....... .+.+..+.+.. .+++|+++||++|.||.++|+.+....+.+.
T Consensus 129 ~~~~~~~----~~~~~~~~~~~----~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 129 QRHRFAP----RHVLSVLVRKS----WKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred ccccccc----HHHHHHHHHHh----cCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 6421111 11222222211 1357899999999999999998765555444
No 113
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.76 E-value=6.6e-18 Score=157.52 Aligned_cols=154 Identities=21% Similarity=0.161 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|||||||+++|+.... .....++.++.+.............+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~~l 51 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLDFHTNRGKIRF 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999983211 00111222333322223334455788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.+|||||++.+......++..+|++|+|+|++... ++. ....+...+.......|+|+|+||+|+... ....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~--~~~~ 123 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV---TYK---NVPNWHRDLVRVCGNIPIVLCGNKVDIKDR--KVKA 123 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCcEEEEEEchhcccc--cCCH
Confidence 99999999998887778889999999999999762 222 222222222222223459999999998732 1111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+.+. ..+.++++||++|+|+.++|+.+
T Consensus 124 ----~~~~~~~~-----~~~~~~e~Sa~~~~~v~~~f~~l 154 (166)
T cd00877 124 ----KQITFHRK-----KNLQYYEISAKSNYNFEKPFLWL 154 (166)
T ss_pred ----HHHHHHHH-----cCCEEEEEeCCCCCChHHHHHHH
Confidence 11122222 23578999999999999998754
No 114
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.76 E-value=6.7e-18 Score=155.06 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|++|+|||||+++|++..... ...+..+.........+......
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~v~~~~~~~~ 51 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------------NQESTIGAAFLTQTVNLDDTTVK 51 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 3689999999999999999998432111 11222333333334445566678
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||++++......+++.+|++|+|+|++... . +.....++..+.... ...|+|+|+||+|+.......
T Consensus 52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 125 (163)
T cd01860 52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE---S---FEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS 125 (163)
T ss_pred EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH---H---HHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC
Confidence 999999999998888888889999999999998652 1 222222222222222 223499999999987422111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+..+....+ +.++++||++|.|+.+++..+
T Consensus 126 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 126 ----TEEAQEYADENG-----LLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 223334444444 468999999999999998754
No 115
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=6.9e-18 Score=159.13 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|..|+|||||+++|++.... ....++.+..... ...+......+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-----------------------------~~~~pt~~~~~~~-~~~~~~~~~~l 51 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-----------------------------SEYVPTVFDNYAV-TVMIGGEPYTL 51 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeeeeEE-EEEECCEEEEE
Confidence 68999999999999999999842110 0011111111111 12233444788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||+++|...+..+++.+|++|||+|++... +++. ....+...+.. ....|+|||+||+|+.... +..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~~---~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~-~~~ 124 (175)
T cd01874 52 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFEN---VKEKWVPEITHHCPKTPFLLVGTQIDLRDDP-STI 124 (175)
T ss_pred EEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HHHH---HHHHHHHHHHHhCCCCCEEEEEECHhhhhCh-hhH
Confidence 99999999999888888899999999999998763 2222 22112222222 2234599999999986421 111
Q ss_pred H---------HHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 426 D---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 426 e---------~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+ ...++...+.+..+ .+.|+++||++|+||.++|+.+.
T Consensus 125 ~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 125 EKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred HHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHHHHHHHH
Confidence 0 01122333333332 25789999999999999997653
No 116
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=4.4e-18 Score=162.13 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|||||||+++|+....... ...+.+... .....+......+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~~l~ 50 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET-----------------------------YDPTIEDSY-RKQVVVDGQPCMLE 50 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------------CCCchHhhE-EEEEEECCEEEEEE
Confidence 589999999999999999984211000 000011111 11122333445789
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchhHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
||||||+++|...+..+++.+|++|+|+|.+... +++.+..+...+...... ....|+|||+||+|+.......
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~-- 125 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRS---TFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS-- 125 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC--
Confidence 9999999999998889999999999999998763 222222222222222111 1223599999999986421111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
......+.+..+ ++++++||++|.||.++|..+
T Consensus 126 --~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 126 --TEEGAALARRLG-----CEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred --HHHHHHHHHHhC-----CEEEEecCCCCCCHHHHHHHH
Confidence 112233333333 478999999999999998755
No 117
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=158.53 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=119.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|.|||.+|+|||+|+.+|+.... + .....+.|+.+.+....++.+..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f----------------------------d-~~~~~tIGvDFkvk~m~vdg~~~ 60 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF----------------------------D-DLHPTTIGVDFKVKVMQVDGKRL 60 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc----------------------------C-ccCCceeeeeEEEEEEEEcCceE
Confidence 358999999999999999999983221 1 11122357777778888899999
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
++.||||+||++|...+.++++.+..+|+|+|++... .|..+.-+..++-.+.....+. .++|.||+|.....
T Consensus 61 KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rd---tf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R--- 133 (209)
T KOG0080|consen 61 KLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRD---TFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESER--- 133 (209)
T ss_pred EEEEEeccchHhhhccCHhHhccCceeEEEEEccchh---hHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcc---
Confidence 9999999999999999999999999999999999763 3333444555554444444444 47899999975321
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..-+++-..+.+.++ .-|+++||++.+|+...|+++
T Consensus 134 -~V~reEG~kfAr~h~-----~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 134 -VVDREEGLKFARKHR-----CLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred -cccHHHHHHHHHhhC-----cEEEEcchhhhccHHHHHHHH
Confidence 123455566666665 478999999999999999865
No 118
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.76 E-value=7.7e-18 Score=154.40 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|++|+|||||+++|++.... ....+..+.........+......+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-----------------------------EQYKSTIGVDFKTKTIEVDGKRVKL 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEE
Confidence 48999999999999999999843210 0111112222222233333344688
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||+..|.......+..+|++|+|+|+.+..+ +.....++..+.... ...|+++|+||+|+........
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~ 125 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES------FENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSR 125 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCH
Confidence 999999999999888889999999999999987522 222222222222221 2345999999999874221121
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+....+.+..+ ++++++||++|.|+.+++..+
T Consensus 126 ----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 126 ----EEAEAFAEEHG-----LPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred ----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 22333344444 468999999999999998754
No 119
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.76 E-value=1.9e-18 Score=161.31 Aligned_cols=153 Identities=18% Similarity=0.119 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|..|+|||||+++|.+.... ...++.|... ..++.....+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~------------------------------~~~~T~~~~~----~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM------------------------------QPIPTIGFNV----ETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC------------------------------CcCCcCceeE----EEEEECCEEEE
Confidence 5899999999999999999842110 0011111111 12344678999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccchhH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
||||||+..+...+..++..+|++|||+|++... . +.....++..++.. ....|++||+||+|+... ...
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 118 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---R---VSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSV 118 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---H---HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCH
Confidence 9999999999888888999999999999998652 1 33333444444432 222459999999998632 122
Q ss_pred HHHHHHHHHHHHhcCC-CCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~-~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
++ +..+++..++ ....+.++++||++|.||.++|+.+
T Consensus 119 ~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 119 EE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 22 2233322221 1123578899999999999998643
No 120
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.76 E-value=7.7e-18 Score=160.12 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... .....+.+.........+......+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 52 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV----------------------------GPYQNTIGAAFVAKRMVVGERVVTL 52 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC----------------------------cCcccceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998422100 0011122222323333444455678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++++......++..+|++|||+|++... +++ .. ..++..+... ...|+|+|+||+|+........
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~---~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~ 125 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---SFE---RA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLR 125 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---HHH---HH-HHHHHHHHhcCCCCCEEEEEEcccccccccccC
Confidence 89999999998888777888999999999998652 121 11 1222223322 1235999999999864321111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+...+.+..+....+ ++++++||++|.|+.++|+.+
T Consensus 126 ~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~i 161 (193)
T cd04118 126 QVDFHDVQDFADEIK-----AQHFETSSKTGQNVDELFQKV 161 (193)
T ss_pred ccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 111233444444433 468999999999999998765
No 121
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=6.4e-18 Score=160.31 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|..|+|||||+++|++..... ...++.+.........+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-----------------------------STKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998321100 011222333333334444555788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++.|...+...+..+|++|||+|++... .+ .....++..+.... ..+|+|||+||+|+.......
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~---~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~- 124 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---SF---ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVD- 124 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---HH---HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCC-
Confidence 99999999999988888999999999999998762 22 22222222222211 224599999999987422111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+..+ ++++++||++|.|+.++|..+
T Consensus 125 ---~~~~~~~~~~~~-----~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 125 ---SNIAKSFCDSLN-----IPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred ---HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 112222333333 368999999999999998754
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.76 E-value=4e-18 Score=156.31 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=98.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|+|||||+++|.+..... ..++.+.... ...+ .....+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------------------------~~~t~~~~~~--~~~~-~~~~~l~ 47 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------------------------TIPTVGFNVE--MLQL-EKHLSLT 47 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------------------------ccCccCcceE--EEEe-CCceEEE
Confidence 58999999999999999998432100 0111122211 1111 2357899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccchh
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
||||||+..+...+..++..+|++|+|+|+.... .+.....++..++.. .+. |+++|+||+|+... ..
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~--~~ 118 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA------RLDESQKELKHILKNEHIKGV-PVVLLANKQDLPGA--LT 118 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHhchhhcCC-CEEEEEECcccccC--cC
Confidence 9999999999888888899999999999998752 122333333333332 244 49999999998632 11
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~-~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++. ..+....+. ..+++++++||++|+|+.++|+.+
T Consensus 119 ~~~i~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 119 AEEIT----RRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred HHHHH----HHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 22222 222111111 134578999999999999998755
No 123
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.76 E-value=4.4e-18 Score=188.13 Aligned_cols=161 Identities=26% Similarity=0.391 Sum_probs=109.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEE-------
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA------- 337 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~------- 337 (519)
+++.|+|+|++|+|||||+++|++....... ..++|..+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e-------------------------------~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKRE-------------------------------AGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccc-------------------------------CCceecccCeeEeeeccc
Confidence 5667999999999999999999854221100 01111111100
Q ss_pred -----------eecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC
Q 010046 338 -----------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 338 -----------~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p 406 (519)
.+......+.|||||||+.|...+..++..+|++|||+|++.+ ...++.+++.++...++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC
Confidence 0111223589999999999999999999999999999999977 456777888888877877
Q ss_pred cEEEEEeeccccc-ccc--------------h----hHHHHHHHHHHHHHhcCCCC----------CCceEEEeccccCC
Q 010046 407 QLIVAVNKMDAVQ-YSK--------------D----RFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQ 457 (519)
Q Consensus 407 piIVVvNKiDlv~-~~~--------------e----~le~i~e~l~~~l~~~g~~~----------~~i~~IpvSA~tGe 457 (519)
+|+|+||+|+.. +.. . .++.....+...+...|+.. .+++++|+||++|+
T Consensus 124 -iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 -FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred -EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 999999999963 110 0 01111112223344445432 25789999999999
Q ss_pred Cccccccc
Q 010046 458 NLVTAPDD 465 (519)
Q Consensus 458 gI~el~~~ 465 (519)
|+.++...
T Consensus 203 GideLl~~ 210 (590)
T TIGR00491 203 GIPELLTM 210 (590)
T ss_pred ChhHHHHH
Confidence 99998753
No 124
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.76 E-value=1.3e-17 Score=159.36 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=104.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.+||+|+|..|+|||||+.+|+..... ....++.+.... ....++...
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~-----------------------------~~~~~t~~~~~~-~~~~~~~~~ 50 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFP-----------------------------KEYIPTVFDNYS-AQTAVDGRT 50 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------cCCCCceEeeeE-EEEEECCEE
Confidence 35689999999999999999999832110 001111121111 112345556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||+++|...+..+++.+|++|+|+|++... +++.+.. .++..+.......|+|||+||.|+.....
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~~~--~w~~~i~~~~~~~piilvgNK~DL~~~~~- 124 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENVRH--KWHPEVCHHCPNVPILLVGTKKDLRNDAD- 124 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHHHH--HHHHHHHhhCCCCCEEEEEeChhhhcChh-
Confidence 78999999999999998888999999999999998763 2332221 11111222222345999999999964211
Q ss_pred hHHH---------HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~---------i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+. ..++...+.+..+ .+.|+++||++|+||.++|+.+
T Consensus 125 ~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 125 TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKEVFAEA 172 (191)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHHHHHHH
Confidence 1111 1123334444443 2478999999999999999754
No 125
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.76 E-value=8.6e-18 Score=160.07 Aligned_cols=163 Identities=17% Similarity=0.089 Sum_probs=106.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+..+||+++|..|+|||||+++|+..... ....++.+.... ....++...
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~-----------------------------~~~~pT~~~~~~-~~~~~~~~~ 52 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-----------------------------ENYVPTVFENYT-ASFEIDTQR 52 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------CccCCceeeeeE-EEEEECCEE
Confidence 34678999999999999999999842110 001111111111 122344556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccch-hHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTA-KGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l-~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||+|+++|......+++.+|++|+|+|.+... +++.+ ..+..++. ......|+|||+||+|+.....
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~---Sf~~~~~~w~~~i~---~~~~~~piilVgNK~DL~~~~~ 126 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLDSVLKKWKGEIQ---EFCPNTKMLLVGCKSDLRTDLT 126 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHH---HHCCCCCEEEEeEChhhhcChh
Confidence 78999999999999998888999999999999998762 33322 12222222 2122345999999999863110
Q ss_pred h--------hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCC-cccccccc
Q 010046 423 D--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDDG 466 (519)
Q Consensus 423 e--------~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGeg-I~el~~~i 466 (519)
. ......++...+.+..++ +.|+++||++|+| |.++|..+
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHHHHHHH
Confidence 0 001123455566666552 3789999999998 99999865
No 126
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=6.2e-18 Score=157.70 Aligned_cols=159 Identities=17% Similarity=0.131 Sum_probs=98.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|++|+|||||+++|+..... .......+.........+......
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-----------------------------ERTEATIGVDFRERTVEIDGERIK 52 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------CccccceeEEEEEEEEEECCeEEE
Confidence 478999999999999999999832110 001111222222233344455578
Q ss_pred EEEEeCCCCCcchh-hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||+++|.. .+..+++.+|++|+|+|++...+ +..+..+..++........+ |+|+|+||+|+.......
T Consensus 53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~ 128 (170)
T cd04115 53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FHSLPSWIEECEQHSLPNEV-PRILVGNKCDLREQIQVP 128 (170)
T ss_pred EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HHhHHHHHHHHHHhcCCCCC-CEEEEEECccchhhcCCC
Confidence 99999999998874 45667889999999999997632 22222222222211111234 499999999987422111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEecccc---CCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~t---GegI~el~~~i 466 (519)
. +....+.+.. +++|+++||++ +.||.++|..+
T Consensus 129 -~---~~~~~~~~~~-----~~~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 129 -T---DLAQRFADAH-----SMPLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred -H---HHHHHHHHHc-----CCcEEEEeccCCcCCCCHHHHHHHH
Confidence 1 1222223332 25789999999 88888887643
No 127
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=5.7e-18 Score=187.61 Aligned_cols=182 Identities=23% Similarity=0.278 Sum_probs=115.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+++.|+|+|++|+|||||+++|.+.......... ..+.-+.+ ...........+..... ..+...
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~-------itq~ig~~----~~~~~~~~~~~~~~~~~--~~~~~~ 69 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGG-------ITQHIGAT----EVPIDVIEKIAGPLKKP--LPIKLK 69 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCc-------eEEeecee----eccccccccccceeccc--cccccc
Confidence 356778999999999999999999754221100000 00000000 00000000000000000 000111
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc-cc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-YS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~-~~ 421 (519)
-..++|||||||++|...+..++..+|++|||+|+..+ +..++.+++.++...++| +|+|+||+|+.. +.
T Consensus 70 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~ 140 (586)
T PRK04004 70 IPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWK 140 (586)
T ss_pred cCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhh
Confidence 11379999999999999999999999999999999987 456788888888888877 999999999852 21
Q ss_pred ------------------chhHHHHHHHHHHHHHhcCCCC----------CCceEEEeccccCCCcccccccc
Q 010046 422 ------------------KDRFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ------------------~e~le~i~e~l~~~l~~~g~~~----------~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++...++..+|...|+.. .+++++|+||++|+|+.++...+
T Consensus 141 ~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i 213 (586)
T PRK04004 141 STEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVL 213 (586)
T ss_pred hhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHH
Confidence 1233344445556667666643 35789999999999999987644
No 128
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=1.2e-17 Score=163.39 Aligned_cols=157 Identities=20% Similarity=0.181 Sum_probs=104.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+..+||+|+|..|+|||||+++++.... .....++.|.+............
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-----------------------------~~~~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-----------------------------CCccCCccceeEEEEEEEECCeE
Confidence 6779999999999999999999873211 00112223333333333344455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||+++|...+..+++.+|++|+|+|.+... ++..+..+..++. ......|+|||+||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~~i~~w~~~i~---~~~~~~piilvgNK~Dl~~~~v- 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNRQV- 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHHHHHHHHHHHH---HhCCCCcEEEEEEchhhhhccC-
Confidence 78999999999999988888899999999999999763 2222222222222 2222335999999999863211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. +.+ .+.+.. .+.++++||++|.||.++|..+
T Consensus 135 ~~----~~~-~~~~~~-----~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 135 KA----KQV-TFHRKK-----NLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred CH----HHH-HHHHhc-----CCEEEEcCCCCCCCHHHHHHHH
Confidence 11 112 222222 3578999999999999998754
No 129
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=1.5e-17 Score=158.01 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+++|..|+|||||+++|++... .....++.|.........+......+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-----------------------------~~~~~~T~g~~~~~~~i~~~~~~~~l 51 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-----------------------------DEDYIQTLGVNFMEKTISIRGTEITF 51 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCccceEEEEEEEEECCEEEEE
Confidence 4799999999999999999984211 00111223333322333344445789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccc-hh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK-DR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~-e~ 424 (519)
.||||+|++.|...+..+++.+|++|+|+|+++.. +++.+.. ++..+... ...+| |+|+||+|+..... ..
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~~~i~~---~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~ 124 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TLNSIKE---WYRQARGFNKTAIP-ILVGTKYDLFADLPPEE 124 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HHHHHHH---HHHHHHHhCCCCCE-EEEEEchhccccccchh
Confidence 99999999999988888999999999999998762 2222222 22222221 12344 68899999963211 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+.++...+.+..+ .+++++||++|.|+.++|+.+
T Consensus 125 ~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~lf~~l 161 (182)
T cd04128 125 QEEITKQARKYAKAMK-----APLIFCSTSHSINVQKIFKIV 161 (182)
T ss_pred hhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 1123344445554444 478999999999999999754
No 130
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.75 E-value=6.4e-18 Score=154.69 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+++|.+|+|||||+++|++....... ....+... .....+......+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~-----------------------------~~~~~~~~-~~~~~~~~~~~~~ 50 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY-----------------------------EPTKADSY-RKKVVLDGEDVQL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc-----------------------------CCcchhhE-EEEEEECCEEEEE
Confidence 47999999999999999999843211000 00000001 1112244455789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+.++......+++.++++++|+|+.... .+..+..+...+.......+.| +|+|+||+|+........
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~~- 125 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVSS- 125 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccCH-
Confidence 99999999999999888999999999999998652 2222222222222221123445 999999999974211111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.....+.+.++ .+++++||++|+|+.++|..+
T Consensus 126 ---~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 126 ---EEAANLARQWG-----VPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred ---HHHHHHHHHhC-----CeEEEeeCCCCCCHHHHHHHH
Confidence 22223333333 368999999999999998754
No 131
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=1.4e-17 Score=150.24 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+++|.+|+|||||+++|++...... ..++.+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999984322111 11223333444444444456789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.|||+||+..+.......+..+|++|+|+|+.... .+.....++..+.... ...|+++|+||+|+.......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 124 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE------SFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS- 124 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc-
Confidence 99999999999998888999999999999998641 1222233222222222 234599999999996222222
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+..+.... ..+++++||++|.|+.+++..+
T Consensus 125 ---~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 125 ---TEEAQQFAKEN-----GLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred ---HHHHHHHHHHc-----CCeEEEEecCCCCCHHHHHHHH
Confidence 23334444433 3578999999999999998643
No 132
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.9e-18 Score=154.66 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|++||..|+|||.|+++|... +.......+.|+.+-+....+.....+
T Consensus 7 lfkivlvgnagvgktclvrrftqg-----------------------------lfppgqgatigvdfmiktvev~gekik 57 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQG-----------------------------LFPPGQGATIGVDFMIKTVEVNGEKIK 57 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhcc-----------------------------CCCCCCCceeeeeEEEEEEEECCeEEE
Confidence 478999999999999999999821 222333445677777777888889999
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||+|+++|...+.++++.++++|+|+|.+.. .+|+.+..+..++.+++...-++ |+|.||+|+.+. .+..
T Consensus 58 lqiwdtagqerfrsitqsyyrsahalilvydiscq---psfdclpewlreie~yan~kvlk--ilvgnk~d~~dr-revp 131 (213)
T KOG0095|consen 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ---PSFDCLPEWLREIEQYANNKVLK--ILVGNKIDLADR-REVP 131 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhhcceEEEEEecccC---cchhhhHHHHHHHHHHhhcceEE--Eeeccccchhhh-hhhh
Confidence 99999999999999999999999999999999976 46777888888888877664433 899999998742 2334
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+++-+++... .++.|+++||+..+|++.+|.++
T Consensus 132 ~qigeefs~~--------qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 132 QQIGEEFSEA--------QDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred HHHHHHHHHh--------hhhhhhhhcccchhhHHHHHHHH
Confidence 4455444443 13567999999999999999765
No 133
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=1e-17 Score=155.85 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|||||||+++|.+..... ...++.+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE-----------------------------SYDPTIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-----------------------------ccCCcchheE-EEEEEECCEEEEE
Confidence 589999999999999999998332100 0001111111 1222234445688
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..++..++++|+|+|.+... .++....+..++.......+.| +|+|+||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~-- 125 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVS-- 125 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccC--
Confidence 99999999999999999999999999999999752 2222323333333222223445 99999999987432211
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+....+.+.++ .++++++||++|.|+.++|..+
T Consensus 126 --~~~~~~~~~~~~----~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 126 --REDGVSLSQQWG----NVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred --HHHHHHHHHHcC----CceEEEeeCCCCCCHHHHHHHH
Confidence 122233333333 2578999999999999998754
No 134
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.75 E-value=1.6e-17 Score=152.99 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CCCeE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~~~~ 345 (519)
+||+|+|.+|+|||||+++|.+...... ....++.|.........+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~---------------------------~~~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP---------------------------KNYLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC---------------------------ccCCCceEEEEEEEEEEeCCCCEEE
Confidence 4899999999999999999983211000 0111122333222222332 35578
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.+|||||++.+...+..++..+|++|+|+|.+...+ +.... .++..+... ...|+|+|+||+|+.....
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-- 124 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS------FENCS-RWVNKVRTASKHMPGVLVGNKMDLADKAE-- 124 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhCCCCCEEEEEECcccccccC--
Confidence 9999999999998888889999999999999986521 22122 222222222 2245999999999864311
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .....+....+ .+++++||++|.|+.++|+.+
T Consensus 125 ~~~--~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 125 VTD--AQAQAFAQANQ-----LKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred CCH--HHHHHHHHHcC-----CeEEEEeCCCCCChHHHHHHH
Confidence 111 11112222222 468999999999999998644
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.75 E-value=1.9e-17 Score=153.07 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++....... .+ ...........+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~-~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY-----------------------------VP-TVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------------CC-ceeeeeEEEEEECCEEEEE
Confidence 58999999999999999999853220000 00 0001111122233455689
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++++.......+..+|++++|+|++... .+.....+++..+... ...|+|+|+||+|+........
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 124 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS------SFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLK 124 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhh
Confidence 99999999988777777788999999999998642 1223333333333322 2345999999999985322100
Q ss_pred -------HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 -------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 -------e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+....+....++ .+++++||++|+|+.++++.+
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 125 KLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred hcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHHHHHHH
Confidence 0113344445444443 378999999999999998754
No 136
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.3e-18 Score=161.29 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=122.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
-..++|+++|.+++|||.|+.+|.... .......+.|+.+......++...
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~-----------------------------f~~~~~sTiGIDFk~kti~l~g~~ 60 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDS-----------------------------FNTSFISTIGIDFKIKTIELDGKK 60 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhcc-----------------------------CcCCccceEEEEEEEEEEEeCCeE
Confidence 456899999999999999999998321 122333446777777777777888
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++||||+||++|...+.+|++.|+.+++|+|.+.. .+|+.+..|.+.+-..+.. .++ ++||+||+|+....
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfeni~~W~~~I~e~a~~-~v~-~~LvGNK~D~~~~R-- 133 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFENIRNWIKNIDEHASD-DVV-KILVGNKCDLEEKR-- 133 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHHHHHHHHHHHHhhCCC-CCc-EEEeeccccccccc--
Confidence 8999999999999999999999999999999999976 4555555555554444433 455 89999999997421
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..-.++.+++...+| +.|+++||++|.||.+.|..+
T Consensus 134 --~V~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 134 --QVSKERGEALAREYG-----IKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred --cccHHHHHHHHHHhC-----CeEEEccccCCCCHHHHHHHH
Confidence 123556666777776 488999999999999998754
No 137
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.75 E-value=1.1e-17 Score=155.66 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ...+..+. .......+......+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~-----------------------------~~~~t~~~-~~~~~~~~~~~~~~~ 50 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE-----------------------------EYVPTVFD-HYAVSVTVGGKQYLL 50 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCceee-eeEEEEEECCEEEEE
Confidence 479999999999999999998432100 00000000 111122234445678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||+..|......++..+|++|+|+|..... ++ ......+...+.. ....|+|||+||+|+........
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~---~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~ 124 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SF---QNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLA 124 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHH
Confidence 89999999999888888889999999999998762 22 2222222222222 22234999999999864321110
Q ss_pred --------HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 --------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 --------e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....++...+++..+. ..|+++||++|.||.++|+.+
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 125 RLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHHHHHHH
Confidence 1112334445555543 368999999999999999765
No 138
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.75 E-value=1.4e-17 Score=157.86 Aligned_cols=161 Identities=13% Similarity=0.047 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|..|+|||+|+.+++.... .....++.+.... ....++.....+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-----------------------------~~~~~~Ti~~~~~-~~~~~~~~~v~l 51 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-----------------------------PTDYIPTVFDNFS-ANVSVDGNTVNL 51 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-----------------------------CCCCCCcceeeeE-EEEEECCEEEEE
Confidence 6899999999999999999983211 0011111222221 122344556789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc----
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK---- 422 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~---- 422 (519)
.||||+|+++|...+..+++.++++|+|+|.+... +++.+. ..++..+.......|+|||+||+|+.....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~---Sf~~~~--~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~ 126 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA---SYENVL--KKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLAD 126 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHH---HHHHHH--HHHHHHHHHhCCCCCEEEEEeChhhccChhhhhh
Confidence 99999999999999989999999999999999763 232221 122222222222345999999999964211
Q ss_pred --hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 --DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 --e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.......++...+.+..+. ..|+++||++|.||.++|..+
T Consensus 127 ~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~~F~~~ 168 (176)
T cd04133 127 HPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVFDAA 168 (176)
T ss_pred ccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHHHHHHH
Confidence 0001123444555555442 258999999999999999765
No 139
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.75 E-value=4.5e-18 Score=155.87 Aligned_cols=152 Identities=20% Similarity=0.147 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|.+|+|||||+++|++..... ...+.+++. ..+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~------------------------------~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT------------------------------TIPTIGFNV----ETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC------------------------------CCCCcCcce----EEEEECCEEEE
Confidence 59999999999999999998542100 001112211 12333467899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH---HhCCCcEEEEEeecccccccchh
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
||||||+..+...+...+..+|++++|+|+..+. . +......+..+.. ..+. |+++|+||+|+... ..
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~---~~~~~~~~~~~~~~~~~~~~-piiiv~nK~D~~~~--~~ 117 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE---R---IEEAKEELHKLLNEEELKGV-PLLIFANKQDLPGA--LS 117 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHH---H---HHHHHHHHHHHHhCcccCCC-cEEEEeeccCCccc--cC
Confidence 9999999999888888889999999999999752 1 2222222222222 2234 49999999998742 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++.+ .+.........++++++||++|.|+.++|+.+
T Consensus 118 ~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 118 VSELIE----KLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred HHHHHH----hhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 223332 22222122345689999999999999998644
No 140
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=5.8e-18 Score=153.64 Aligned_cols=145 Identities=26% Similarity=0.261 Sum_probs=99.1
Q ss_pred EEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEE
Q 010046 270 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVL 349 (519)
Q Consensus 270 vIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~Li 349 (519)
+|+|.+|+|||||+++|++..... ....+++|...........+..+.||
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999998432110 11123444444444455567889999
Q ss_pred eCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 350 DSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 350 DTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
||||+..+.. .+...+..+|++|+|+|+..+. .....++..+++..+.| +++|+||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL--------TPADEEIAKYLRKSKKP-VILVVNKVDNIKE- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC--------CccHHHHHHHHHhcCCC-EEEEEECcccCCh-
Confidence 9999888544 3455678899999999998652 22334555666666665 9999999999743
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... ...+...++. +++++||++|.|+.++++.+
T Consensus 121 -~~~-------~~~~~~~~~~----~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 121 -EDE-------AAEFYSLGFG----EPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred -HHH-------HHHHHhcCCC----CeEEEecccCCCHHHHHHHH
Confidence 111 1222333432 46999999999999998754
No 141
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=5.1e-18 Score=192.56 Aligned_cols=206 Identities=17% Similarity=0.137 Sum_probs=133.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|||||||+|+|++....+. ...+|+|.+.....+...+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~~ 499 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGED 499 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCCE
Confidence 47999999999999999999995432111 112444544444445556778
Q ss_pred EEEEeCCCCCc---------chhh--hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 346 VVVLDSPGHKD---------FVPN--MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 346 l~LiDTPG~~~---------f~~~--~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
+.||||||+.+ +... ...++..+|++|+|+|++.+ ...+...++..+...+.| +|||+||
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~--------~s~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQP--------ISEQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEc
Confidence 89999999642 1111 13456889999999999987 334444555555556666 9999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhccccCCC
Q 010046 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSLYLCPY 494 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~~~~~~ 494 (519)
+|+.. ....+.+...+...+... ...+++++||++|.|+.++++.+....-.+..++++..|++.+......-.
T Consensus 571 ~DL~~--~~~~~~~~~~~~~~l~~~----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~ 644 (712)
T PRK09518 571 WDLMD--EFRRQRLERLWKTEFDRV----TWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHP 644 (712)
T ss_pred hhcCC--hhHHHHHHHHHHHhccCC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCC
Confidence 99974 222233333333332222 234679999999999999999877666666778899999988876532222
Q ss_pred eeeec-----CCceeEEecccceeeec
Q 010046 495 VTFLN-----HSTGRCLPVANWRLELF 516 (519)
Q Consensus 495 ~~~~~-----~~~g~~~p~~~~~~~l~ 516 (519)
....+ -..-+.+...++++.+|
T Consensus 645 ~p~~~g~~~ki~y~~q~~~~Pp~f~~f 671 (712)
T PRK09518 645 HPLRGGKQPRILFATQASTRPPRFVIF 671 (712)
T ss_pred CCccCCeeeeEEEEECCCCCCCEEEEE
Confidence 21111 11112244666777766
No 142
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=1.7e-17 Score=156.87 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CCCeE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~~~~ 345 (519)
+||+|+|.+|+|||||+++|++..... ...++.+.... ...... .....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~i~~~~~~~~~ 50 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE-----------------------------EYVPTVFENYV-TNIQGPNGKIIE 50 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-----------------------------CCCCeeeeeeE-EEEEecCCcEEE
Confidence 489999999999999999998432100 00011111111 111122 34467
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhCCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||+++|......++..+|++|+|+|++... +++ .....++..+. .....|+|||+||+|+.......
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 124 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---SLD---NVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLD 124 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcccc
Confidence 899999999999988888899999999999998752 222 22211221222 12223599999999986422111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.....++...+....++ .+++++||++|.||.++|..+
T Consensus 125 ~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~f~~l 162 (187)
T cd04132 125 RKVTPAQAESVAKKQGA----FAYLECSAKTMENVEEVFDTA 162 (187)
T ss_pred CCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHHHHHHH
Confidence 01112344445544443 267999999999999998754
No 143
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=1.6e-17 Score=167.57 Aligned_cols=150 Identities=31% Similarity=0.436 Sum_probs=115.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|++|+|||||+++|++..+.+.+..... ++.... ...+|....++.+++++......+++.+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~--------~~~~~~-~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVK--------ARKSRK-HATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceec--------ccccCC-CccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 46899999999999999999998877765432110 000011 124666778888999999999999999999
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||||+.+|...+..+++.+|++|+|+|+..+ ...++..++.++...++| +|+++||+|+.... +
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~---~ 140 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDREGRD---P 140 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC---H
Confidence 99999999999999899999999999999999876 345666777777777777 89999999986432 2
Q ss_pred HHHHHHHHHHH
Q 010046 426 DSIKVQLGTFL 436 (519)
Q Consensus 426 e~i~e~l~~~l 436 (519)
..+.++++..+
T Consensus 141 ~~~~~~l~~~l 151 (267)
T cd04169 141 LELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHH
Confidence 23344554443
No 144
>PRK00007 elongation factor G; Reviewed
Probab=99.74 E-value=5.7e-18 Score=191.52 Aligned_cols=172 Identities=27% Similarity=0.334 Sum_probs=136.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|++..+.+...... ....+.+|....++.+|+|++.....+.+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v-------------~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~ 74 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEV-------------HDGAATMDWMEQEQERGITITSAATTCFWKD 74 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-------------cCCcccCCCCHHHHhCCCCEeccEEEEEECC
Confidence 457899999999999999999999777655321100 0114578888999999999999888899999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
+.++|+|||||.+|...+..++..+|++|+|||+..+ ...++..++.++...++| +|+++||+|+....
T Consensus 75 ~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 75 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 678899999999999988 78999999998532
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccC-CCcccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVTAPD 464 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG-egI~el~~ 464 (519)
+..+.++++..+... .-...+|+||..+ .|+.+++.
T Consensus 144 -~~~~~~~i~~~l~~~----~~~~~ipisa~~~f~g~~d~~~ 180 (693)
T PRK00007 144 -FYRVVEQIKDRLGAN----PVPIQLPIGAEDDFKGVVDLVK 180 (693)
T ss_pred -HHHHHHHHHHHhCCC----eeeEEecCccCCcceEEEEcce
Confidence 444555555554322 1245689999888 56666654
No 145
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.74 E-value=8.4e-18 Score=159.62 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=101.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|+|||||++++...... ...++.+... ..+...+.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~------------------------------~~~~T~~~~~----~~~~~~~~ 61 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV------------------------------TTIPTIGFNV----ETVEYKNL 61 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------ccCCccccce----EEEEECCE
Confidence 4578999999999999999999621100 0011122221 12334668
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~ 422 (519)
.+.||||||++.+...+..+++.+|++|||+|++... + +.....++..++.. ...+|+|||+||.|+...
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-- 133 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---R---IGDAREELERMLSEDELRDAVLLVFANKQDLPNA-- 133 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---H---HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--
Confidence 8999999999999998889999999999999998642 1 22333344444332 233569999999998632
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
...+++ ...+....+....+.++++||++|+|+.++|+.
T Consensus 134 ~~~~~i----~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~ 172 (182)
T PTZ00133 134 MSTTEV----TEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDW 172 (182)
T ss_pred CCHHHH----HHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHH
Confidence 111222 222222223333456789999999999999863
No 146
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.74 E-value=1.8e-17 Score=154.27 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=100.0
Q ss_pred EEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEE
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~L 348 (519)
|+|+|.+|+|||||+++|++..... ......+.. ......+......+.|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~-----------------------------~~~~~~~~~-~~~~~~~~~~~~~~~i 50 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE-----------------------------DYVPTVFEN-YSADVEVDGKPVELGL 50 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCcEEee-eeEEEEECCEEEEEEE
Confidence 6899999999999999998422100 000000111 1112223444567899
Q ss_pred EeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHH-HHHHHHHHhCCCcEEEEEeecccccccchhHH-
Q 010046 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD- 426 (519)
Q Consensus 349 iDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~-e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le- 426 (519)
|||||+++|......++..+|++|+|+|++... + +..... ++..+.......|+|||+||+|+.... ...+
T Consensus 51 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s---~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~ 123 (174)
T smart00174 51 WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---S---FENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK-STLRE 123 (174)
T ss_pred EECCCCcccchhchhhcCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh-hhhhh
Confidence 999999999888888899999999999998652 2 222222 222222222334599999999987421 1111
Q ss_pred --------HHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 427 --------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 427 --------~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
...++...+.+..+. ..++++||++|.||.++|+.+.
T Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 124 LSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred hhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHHHHHHHH
Confidence 112334445555543 3689999999999999998653
No 147
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.74 E-value=8.1e-18 Score=155.61 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe-EE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HV 346 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~-~l 346 (519)
+|+|+|.+|||||||+|+|.+....+.. .++.|.......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-------------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-------------------------------YPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-------------------------------CCccccCCcceEEEcCCCCeE
Confidence 5999999999999999999843221000 011121111112233444 89
Q ss_pred EEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 347 ~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
.||||||+.+ +...+...+..+|++|+|+|++... ..++.+..+..++.........+|+|+|+||+|+..
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD--DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC--CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 9999999642 2333445566799999999998651 111222222222222211112345899999999874
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .... +.+..++... ...+++++||++|.|+.++++.+
T Consensus 129 ~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~i 166 (170)
T cd01898 129 E--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDELLRKL 166 (170)
T ss_pred c--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHHHHHHH
Confidence 2 2222 2223333222 13478999999999999998654
No 148
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.74 E-value=1.1e-17 Score=164.16 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|+..... ...++.+..+ .........+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~------------------------------~~~~Tig~~~----~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK------------------------------DTVSTVGGAF----YLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC------------------------------CCCCccceEE----EEEEeeEEEE
Confidence 47999999999999999999842210 0001111111 1122245679
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc---
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK--- 422 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~--- 422 (519)
.||||||++.|......+++.+|++|+|+|++... .++ ....++..+.... ...|+|||+||+|+.....
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---Sf~---~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~ 120 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---SLE---ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAG 120 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCcEEEEEECccccccccccc
Confidence 99999999999998888999999999999999762 222 2223333333221 2235999999999974100
Q ss_pred ------------hhHHHHHHHHHHHHHhcCCC---------CCCceEEEeccccCCCccccccccc
Q 010046 423 ------------DRFDSIKVQLGTFLRSCGFK---------DASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 423 ------------e~le~i~e~l~~~l~~~g~~---------~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
...+...++...+.+..+.. ...++|+++||++|.||.++|..+.
T Consensus 121 ~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 121 QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 01111233444444443310 1125789999999999999998653
No 149
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=2.3e-17 Score=152.41 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|++|+|||||+++|++.... ....++.|.......+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 47999999999999999999843210 01112333334444455567899
Q ss_pred EEEeCCCCCcchh--------hhhhc-cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecc
Q 010046 347 VVLDSPGHKDFVP--------NMISG-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMD 416 (519)
Q Consensus 347 ~LiDTPG~~~f~~--------~~~~~-l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiD 416 (519)
+||||||+.+... ..... ...+|++|+|+|++.... + .+..+ ..++..+... ...|+|+|+||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~-~~~~~-~~~~~~l~~~~~~~pvilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---Y-SLEEQ-LSLFEEIKPLFKNKPVIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---c-chHHH-HHHHHHHHhhcCcCCeEEEEEccc
Confidence 9999999743110 11111 233689999999986521 1 11122 2223333332 2345999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+... ..+.. ...+.+. ..++++++||++|.|+.++++.+
T Consensus 125 l~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l 163 (168)
T cd01897 125 LLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDEVKNKA 163 (168)
T ss_pred cCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHHHHHHH
Confidence 9742 22222 2222211 23578999999999999998643
No 150
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.74 E-value=1.6e-17 Score=153.84 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||+++|+..... ....++.+.........+......+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 51 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-----------------------------SSHISTIGVDFKMKTIEVDGIKVRI 51 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEE
Confidence 37999999999999999999832110 0011122222222233344445678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
.||||||+++|...+..++..+|++++|+|.+... +++.+..+..++... .....|+++|+||+|+.......
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---sf~~~~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~v~-- 124 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSER---SYQHIMKWVSDVDEY--APEGVQKILIGNKADEEQKRQVG-- 124 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHH---HHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCCC--
Confidence 99999999999988888999999999999998752 333222222222111 11223599999999986422111
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+.+..+ .+|+++||++|.||.++|..+
T Consensus 125 --~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 125 --DEQGNKLAKEYG-----MDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred --HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 122333333333 478999999999999998754
No 151
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=1.9e-17 Score=156.95 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|..|+|||||+++|++.... ....++.+.... ....+......+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-----------------------------~~~~~t~~~~~~-~~~~~~~~~~~l 51 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-----------------------------ETYVPTVFENYT-ASFEIDEQRIEL 51 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-----------------------------CCcCCceEEEEE-EEEEECCEEEEE
Confidence 58999999999999999999842110 000111111111 122344556789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch---
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD--- 423 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e--- 423 (519)
.||||||++.|......+++.+|++|+|+|.+... +++.+ ...++..+.......|+|||+||+|+......
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~---Sf~~~--~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~ 126 (178)
T cd04131 52 SLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE---TLDSV--LKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLME 126 (178)
T ss_pred EEEECCCchhhhhcchhhcCCCCEEEEEEECCChh---hHHHH--HHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHH
Confidence 99999999999888888999999999999998763 23221 11222222222223459999999998631000
Q ss_pred -----hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCC-ccccccccc
Q 010046 424 -----RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDDGI 467 (519)
Q Consensus 424 -----~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGeg-I~el~~~i~ 467 (519)
......++..++.+..++ ..|+++||++|+| |.++|..+.
T Consensus 127 ~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~~F~~~~ 172 (178)
T cd04131 127 LSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRDIFHVAT 172 (178)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHHHHHHHH
Confidence 001123345555555553 3689999999995 999997653
No 152
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=2.6e-17 Score=162.72 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=106.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|..|+|||+|+++|++.... ....++.+..... ...+....
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~-----------------------------~~y~pTi~~~~~~-~i~~~~~~ 60 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYP-----------------------------ETYVPTVFENYTA-GLETEEQR 60 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCC-----------------------------CCcCCceeeeeEE-EEEECCEE
Confidence 35689999999999999999999842110 0001111111111 12344556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||+|++.|......+++.+|++|||+|++... +++.. ...++..+.......|+|||+||+|+......
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---Sf~~~--~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~ 135 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDSA--LKKWKAEIMDYCPSTRILLIGCKTDLRTDLST 135 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---HHHHH--HHHHHHHHHHhCCCCCEEEEEECcccccccch
Confidence 78999999999999988888999999999999999762 22211 12222222222223459999999998531100
Q ss_pred --------hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCC-Cccccccccc
Q 010046 424 --------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPDDGI 467 (519)
Q Consensus 424 --------~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGe-gI~el~~~i~ 467 (519)
......++...+.+..++ ..|++|||++|+ ||.++|..+.
T Consensus 136 ~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e~F~~~~ 184 (232)
T cd04174 136 LMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHSIFRSAS 184 (232)
T ss_pred hhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHHHHHHHH
Confidence 001123455666666653 258999999998 8999998653
No 153
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.74 E-value=9.9e-18 Score=189.63 Aligned_cols=164 Identities=30% Similarity=0.384 Sum_probs=129.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|++..+.+.+... .....+.+|....++.+|+|++.....+.+++
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~-------------~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~ 74 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGE-------------VHDGAATMDWMEQEKERGITITSAATTVFWKG 74 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCcccccc-------------ccCCccccCCCHHHHhcCCCEecceEEEEECC
Confidence 45679999999999999999999987665432110 01123678888899999999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++||||||+.+|...+..++..+|++|||+|+..+ ...++..++.++...++| +|+|+||+|+....
T Consensus 75 ~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~-- 143 (689)
T TIGR00484 75 HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN-- 143 (689)
T ss_pred eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 456677888888888887 78999999998532
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccC
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG 456 (519)
+....+.+...+ +... ....+|+||..+
T Consensus 144 -~~~~~~~i~~~l---~~~~-~~~~ipis~~~~ 171 (689)
T TIGR00484 144 -FLRVVNQIKQRL---GANA-VPIQLPIGAEDN 171 (689)
T ss_pred -HHHHHHHHHHHh---CCCc-eeEEeccccCCC
Confidence 344555555554 3221 235799999877
No 154
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=2e-17 Score=161.00 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee-cCCCe
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKNY 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~-~~~~~ 344 (519)
.+||+|+|.+|+|||||+++|++..... ...++.+.........+ .....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~-----------------------------~~~~ti~~d~~~~~i~~~~~~~~ 52 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE-----------------------------VSDPTVGVDFFSRLIEIEPGVRI 52 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCceeceEEEEEEEEECCCCEE
Confidence 4789999999999999999998422100 00111122221112222 23346
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||++.|......+++.+|++|+|+|++... +++.+..+..++...... ..+++|||+||+|+.......
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~ 128 (211)
T cd04111 53 KLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVT 128 (211)
T ss_pred EEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccC
Confidence 8999999999999988888999999999999998762 232222222222222111 234589999999987421111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.++...+.+.++ +.++++||++|.||.++|+.+.
T Consensus 129 ----~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 129 ----REEAEKLAKDLG-----MKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred ----HHHHHHHHHHhC-----CEEEEEeCCCCCCHHHHHHHHH
Confidence 222333444443 4789999999999999998654
No 155
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=3.4e-17 Score=152.18 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|..|||||||+++|++..... .. . ......+.. ..+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~----------------------~----~~~~~~~~~---~~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NV----------------------P----RVLPEITIP---ADVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cC----------------------C----CcccceEee---eeecCCeEEE
Confidence 479999999999999999998421100 00 0 000111111 1233456789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||+..+...+..++..+|++|+|+|++.+.+ +......+...+... ...|+++|+||+|+......
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s------~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~-- 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST------LERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ-- 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--
Confidence 999999999888877788899999999999987621 222222222333322 23459999999999743221
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+.+..+...+.- -..++++||++|.|+.++|..+
T Consensus 122 ~~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 122 AGLEEEMLPIMNEFRE---IETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred hHHHHHHHHHHHHHhc---ccEEEEeccccccCHHHHHHHH
Confidence 1112222222222210 1268999999999999998754
No 156
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.74 E-value=2.4e-17 Score=154.24 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||++++++..... ...++ +.........+......+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~-----------------------------~~~~t-~~~~~~~~~~~~~~~~~~ 50 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT-----------------------------EYVPT-AFDNFSVVVLVDGKPVRL 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCc-eeeeeeEEEEECCEEEEE
Confidence 579999999999999999997421100 00000 111111123344445688
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccc---
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK--- 422 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~--- 422 (519)
.||||||++.|...+..+++.+|++|+|+|++...+ +......++..+.. ....|+|+|+||+|+.....
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s------f~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 124 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS------FQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLI 124 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHH------HHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHH
Confidence 999999999998888888999999999999997622 22332222333322 22245999999999864211
Q ss_pred -----hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 -----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 -----e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.......++...+.+..+. ..|+++||++|.||.++|+.+
T Consensus 125 ~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 125 QLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred HHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHHHHHHH
Confidence 0001112233344444432 378999999999999999765
No 157
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.6e-18 Score=171.24 Aligned_cols=164 Identities=32% Similarity=0.460 Sum_probs=130.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee----
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---- 339 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~---- 339 (519)
+..++|+++||++.|||||+.+|.+-- .+.+.++..+|+|+.+.+...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvw----------------------------T~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVW----------------------------TDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhhcee----------------------------eechhHHHhcCcEEEeccccCceEe
Confidence 578999999999999999999998421 233344444555544332211
Q ss_pred ----------------cC------CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHH
Q 010046 340 ----------------DS------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (519)
Q Consensus 340 ----------------~~------~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l 397 (519)
.. --+.+.|+|.|||+..+..|+++....|++||||+++.+. -+.|+++|+
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl 132 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHL 132 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHH
Confidence 00 1256889999999999999999999999999999999874 578999999
Q ss_pred HHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 398 ~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
-.+.-.+++++|||-||+|++ +.++..+.-+++++|++..- ..+.++||+||.++.||+-+++.+
T Consensus 133 ~AleIigik~iiIvQNKIDlV--~~E~AlE~y~qIk~FvkGt~--Ae~aPIIPiSA~~~~NIDal~e~i 197 (415)
T COG5257 133 MALEIIGIKNIIIVQNKIDLV--SRERALENYEQIKEFVKGTV--AENAPIIPISAQHKANIDALIEAI 197 (415)
T ss_pred HHHhhhccceEEEEeccccee--cHHHHHHHHHHHHHHhcccc--cCCCceeeehhhhccCHHHHHHHH
Confidence 999999999999999999999 66666666777888876544 346789999999999999998765
No 158
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=8.8e-18 Score=159.14 Aligned_cols=155 Identities=17% Similarity=0.048 Sum_probs=100.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|+.|||||||+++|.+..... ..++.+.+. ..+...+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~------------------------------~~~T~~~~~----~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ------------------------------HVPTLHPTS----EELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc------------------------------cCCccCcce----EEEEECC
Confidence 356889999999999999999998432100 000111111 1223346
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH---HhCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~~ppiIVVvNKiDlv~~ 420 (519)
..+.+|||||+..+...+..++..+|++|+|+|+.... . +.....++..++. ..+. |++||+||+|+..
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s---~~~~~~~~~~i~~~~~~~~~-pvivv~NK~Dl~~- 134 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---R---FQESKEELDSLLSDEELANV-PFLILGNKIDLPG- 134 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---H---HHHHHHHHHHHHcCccccCC-CEEEEEeCCCCCC-
Confidence 78999999999998888888899999999999998641 1 2222233333332 2234 4999999999863
Q ss_pred cchhHHHHHHHHHHHHHhcCC-----------CCCCceEEEeccccCCCccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGF-----------KDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~-----------~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.... +++...++.... ....+.++++||++|+|+.++|+.
T Consensus 135 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~ 185 (190)
T cd00879 135 -AVSE----EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRW 185 (190)
T ss_pred -CcCH----HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHH
Confidence 2222 233333332111 012357899999999999999864
No 159
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.73 E-value=3e-17 Score=154.58 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|..|+|||||+.++++.... . ...++.+.... ....+......+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~---------------------------~~~~t~~~~~~-~~~~~~~~~~~l 51 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--G---------------------------EYIPTVFDNYS-ANVMVDGKPVNL 51 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--C---------------------------cCCCcceeeeE-EEEEECCEEEEE
Confidence 68999999999999999999832110 0 00011111111 112244455788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhCCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||+++|...+..++..+|++|+|+|++... + +......+...+. .....|+|||+||+|+... ....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s---f~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-~~~~ 124 (174)
T cd01871 52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---S---FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-KDTI 124 (174)
T ss_pred EEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-hhhH
Confidence 99999999999988888999999999999999752 2 2222222222222 2222359999999998632 1111
Q ss_pred HH---------HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~---------i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+. ..++...+.+..+ .+.|+++||++|+|+.++|+.+
T Consensus 125 ~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 125 EKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHHHHHHH
Confidence 11 1233334444443 2478999999999999999754
No 160
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.73 E-value=2.2e-17 Score=150.55 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++....... .+..+.........+......+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-----------------------------ESTTQASFFQKTVNIGGKRIDL 51 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-----------------------------CCccceeEEEEEEEECCEEEEE
Confidence 47999999999999999999843221100 0001111111122233344578
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~~~e~l 425 (519)
.+|||||++.+......++..+|++|+|+|++++.. +.....+...+..... ..|+|+|+||+|+........
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~ 125 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADS------FQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK 125 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH
Confidence 999999999888888888889999999999987621 2222222222222221 234999999999874222111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+..+.+..+ ..++++||++|.|+.++++.+
T Consensus 126 ----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 126 ----SEAEEYAKSVG-----AKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred ----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 22233333333 467999999999999998643
No 161
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.73 E-value=2.7e-17 Score=171.45 Aligned_cols=169 Identities=27% Similarity=0.352 Sum_probs=138.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+...+|+||.|++.|||||+..|+...+......-. ..-+||....++++|||+-.....+.+++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v---------------~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV---------------AERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch---------------hhhhcCccchhhhcCcEEEeccceeecCC
Confidence 456789999999999999999999766644332211 12358888999999999988888899999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
.+++|+|||||.+|.-+..+.+..+|.|++||||..| .++|++..+.-+-..+.+| |||+||+|...+.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~Arp- 137 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALALGLKP-IVVINKIDRPDARP- 137 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHHcCCCc-EEEEeCCCCCCCCH-
Confidence 9999999999999999999999999999999999998 6799999999999999996 88999999876543
Q ss_pred hHHHHHHHHHHHHHhcCCCC--CCceEEEeccccCCCc
Q 010046 424 RFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNL 459 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~--~~i~~IpvSA~tGegI 459 (519)
++..++.-.++-.++..+ -+++++..||+.|.--
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 344555555665666543 3468899999988543
No 162
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.73 E-value=5.3e-17 Score=154.72 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||+|+|..|+|||||+++|++..... ...++.+... .....+......+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~i~~~~~~~~l 50 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-----------------------------VYEPTVFENY-VHDIFVDGLHIEL 50 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------ccCCcceeee-EEEEEECCEEEEE
Confidence 479999999999999999998421100 0001111111 1112234445689
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh--
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR-- 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~-- 424 (519)
.||||||++.|...+..++..+|++|+|+|++... +++.+. ..++..+.......|+|||+||+|+.......
T Consensus 51 ~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---sf~~~~--~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~ 125 (189)
T cd04134 51 SLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---SLENVE--SKWLGEIREHCPGVKLVLVALKCDLREARNERDD 125 (189)
T ss_pred EEEECCCChhccccccccccCCCEEEEEEECCCHH---HHHHHH--HHHHHHHHHhCCCCCEEEEEEChhhccChhhHHH
Confidence 99999999999888778889999999999999762 222111 11222222222234599999999997432110
Q ss_pred HH------HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FD------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le------~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. ...++...+++..+ .+.|+++||++|.||.++|..+
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e~f~~l 169 (189)
T cd04134 126 LQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNEAFTEA 169 (189)
T ss_pred HhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHHHHHHH
Confidence 00 01122233333333 2578999999999999999754
No 163
>PLN03110 Rab GTPase; Provisional
Probab=99.73 E-value=3.6e-17 Score=159.62 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=103.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..+||+|+|++|+|||||+++|++.... ....++.|+........+.....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-----------------------------~~~~~t~g~~~~~~~v~~~~~~~ 61 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-----------------------------LESKSTIGVEFATRTLQVEGKTV 61 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeEEEEEEEEEECCEEE
Confidence 4579999999999999999999842110 01112233333333344455557
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeeccccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~ 421 (519)
.+.||||||+++|...+..+++.++++|+|+|++... .++.+ .. ++..+.. .+. |+|||+||+|+....
T Consensus 62 ~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~---~~-~~~~~~~~~~~~~-piiiv~nK~Dl~~~~ 133 (216)
T PLN03110 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNV---QR-WLRELRDHADSNI-VIMMAGNKSDLNHLR 133 (216)
T ss_pred EEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HHHHH---HH-HHHHHHHhCCCCC-eEEEEEEChhccccc
Confidence 8999999999999998888999999999999998652 22222 22 2222222 234 499999999986421
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ...+ ....+.... .++++++||++|.|+.++|+.+
T Consensus 134 ~-~~~~---~~~~l~~~~-----~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 134 S-VAEE---DGQALAEKE-----GLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred C-CCHH---HHHHHHHHc-----CCEEEEEeCCCCCCHHHHHHHH
Confidence 1 1111 122222222 3588999999999999999765
No 164
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.5e-17 Score=155.41 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=120.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+|++++|..|+|||.|+.++..... ......+.|+........++....+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-----------------------------~~~hd~TiGvefg~r~~~id~k~IK 56 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-----------------------------QPVHDLTIGVEFGARMVTIDGKQIK 56 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-----------------------------cccccceeeeeeceeEEEEcCceEE
Confidence 47899999999999999999984321 1112234567666777788889999
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
++||||+||+.|...+.++++.+..+|||+|.++.. .|..+..+..++.+.. ..+.. ++|+.||+||....
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~---sF~hL~~wL~D~rq~~-~~Nmv-ImLiGNKsDL~~rR---- 127 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRE---SFNHLTSWLEDARQHS-NENMV-IMLIGNKSDLEARR---- 127 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchh---hHHHHHHHHHHHHHhc-CCCcE-EEEEcchhhhhccc----
Confidence 999999999999999999999999999999999873 3443433333333322 12333 78999999997432
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.-+++-+.+.++.|+ .|+.+||++++||+|+|...
T Consensus 128 ~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 128 EVSKEEGEAFAREHGL-----IFMETSAKTAENVEEAFINT 163 (216)
T ss_pred cccHHHHHHHHHHcCc-----eeehhhhhhhhhHHHHHHHH
Confidence 3346777888888875 67899999999999999764
No 165
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=1.7e-17 Score=154.31 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=101.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|.+..... ..++.|.++ ..+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~------------------------------~~~t~g~~~----~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH------------------------------ITPTQGFNI----KTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc------------------------------cCCCCCcce----EEEEECC
Confidence 347889999999999999999998431100 011122222 1223346
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHH---HHhCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI---RSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll---~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+.+|||||+..+...+..++..+|++++|+|+.... . +.....++..++ ...+.| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---R---LEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---H---HHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 78999999999988888888889999999999998641 1 222222222222 223445 9999999998742
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+.+. ..+....+....+.++++||++|+|+.++++.+
T Consensus 131 --~~~~~i~----~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 131 --APAEEIA----EALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred --CCHHHHH----HHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 2222222 222222333334567899999999999997643
No 166
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=2e-17 Score=150.77 Aligned_cols=144 Identities=20% Similarity=0.236 Sum_probs=93.8
Q ss_pred EEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEe
Q 010046 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (519)
Q Consensus 271 IVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiD 350 (519)
|+|.+|+|||||+++|.+.... ....+++|.......+...+..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-------------------------------VGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-------------------------------ccCCCCcccccceEEEeeCCeEEEEEE
Confidence 5899999999999999843210 011234454444444555567899999
Q ss_pred CCCCCcchhh------hhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 351 SPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 351 TPG~~~f~~~------~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
|||+.++... +..++ ..+|++|+|+|+.... ........+...++| +|+|+||+|+...
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~-- 116 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE----------RNLYLTLQLLELGLP-VVVALNMIDEAEK-- 116 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch----------hHHHHHHHHHHcCCC-EEEEEehhhhccc--
Confidence 9998876642 23334 4899999999998641 112223334445665 9999999999743
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... ....+...++ .+++++||++|.|+.++++.+
T Consensus 117 ~~~~~---~~~~~~~~~~-----~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 117 RGIKI---DLDKLSELLG-----VPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred ccchh---hHHHHHHhhC-----CCeEEEEccCCCCHHHHHHHH
Confidence 21111 1222333333 468999999999999987643
No 167
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=3.1e-17 Score=166.89 Aligned_cols=157 Identities=21% Similarity=0.196 Sum_probs=102.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.-.|+|+|.+|||||||+|+|++....+.... +.+|...........+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~------------------------------~~tt~~~i~~i~~~~~ 52 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRHRIRGIVTEDD 52 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCC------------------------------CCcccccEEEEEEcCC
Confidence 3556799999999999999999996543322211 1112211112222345
Q ss_pred eEEEEEeCCCCCcc--------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 344 YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~~l~LiDTPG~~~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.+++||||||+... .......+..+|+++||+|+... +.....+++..+...+.| +++|+||+
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--------~~~~~~~i~~~l~~~~~p-vilVlNKi 123 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--------IGPGDEFILEKLKKVKTP-VILVLNKI 123 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--------CChhHHHHHHHHhhcCCC-EEEEEECC
Confidence 78999999996442 23345567889999999999974 334455666666655555 99999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
|+... ...+.. .+..+.+..+ ...++++||++|.|+.++++.+.
T Consensus 124 Dl~~~-~~~l~~---~~~~l~~~~~----~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 124 DLVKD-KEELLP---LLEELSELMD----FAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred cCCCC-HHHHHH---HHHHHHhhCC----CCeEEEecCCCCCCHHHHHHHHH
Confidence 99732 222222 2333322222 34679999999999999987543
No 168
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.8e-17 Score=157.45 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=100.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|||||||+++|.+...... .++.+.+. ..+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~------------------------------~~t~~~~~----~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH------------------------------QPTQHPTS----EELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc------------------------------CCccccce----EEEEECC
Confidence 3458899999999999999999984321100 01111111 1223356
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~ 420 (519)
..+.+|||||+..+...+..++..+|++|+|+|++... .+.....++..++.. .+. |++||+||+|+...
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~------~~~~~~~~l~~l~~~~~~~~~-piliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE------RFAESKRELDALLSDEELATV-PFLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH------HHHHHHHHHHHHHcChhhcCC-CEEEEEeCccccCC
Confidence 78999999999999888889999999999999998651 122222233333321 244 59999999998632
Q ss_pred cchhHHHHHHHHHHHHHhc----CCCCCCceEEEeccccCCCcccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSC----GFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~----g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
...+++.+.+.-. ... ........++++||++|+|+.++++
T Consensus 134 --~~~~~i~~~l~l~-~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~ 178 (184)
T smart00178 134 --ASEDELRYALGLT-NTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFK 178 (184)
T ss_pred --CCHHHHHHHcCCC-cccccccccCCceeEEEEeecccCCChHHHHH
Confidence 2223333333210 000 0111345789999999999999865
No 169
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.72 E-value=2e-17 Score=153.06 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|+|||||+++|+..... .. .....+ ........++.....+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~---------------------------~~~t~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GE---------------------------YDPNLE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cc---------------------------cCCChH-HhceEEEEECCEEEEEE
Confidence 5899999999999999999832110 00 000000 00111223344456789
Q ss_pred EEeCCCCCc-chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhCCCcEEEEEeecccccccchhH
Q 010046 348 VLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
||||||+.. +...+..+++.+|++|+|+|++... +++.+..+...+..... ..+. |+|+|+||+|+.....-.
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~v~- 125 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SFDEISQLKQLIREIKKRDREI-PVILVGNKADLLHYRQVS- 125 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCC-CEEEEEECCchHHhCccC-
Confidence 999999985 3455667888999999999999762 22222222222222111 1234 499999999986321111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccC-CCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG-egI~el~~~i 466 (519)
.+....+.+..+ .+++++||++| .||.++|+.+
T Consensus 126 ---~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 126 ---TEEGEKLASELG-----CLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ---HHHHHHHHHHcC-----CEEEEeCCCCCchhHHHHHHHH
Confidence 122333333443 37899999999 5999999754
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.4e-17 Score=180.84 Aligned_cols=150 Identities=27% Similarity=0.313 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|||.+|||||||+|+|++....+ ....+|+|.+.....+.+.+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~~ 87 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGRR 87 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCcE
Confidence 3689999999999999999999532211 1223567776666666777888
Q ss_pred EEEEeCCCCCc--------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 346 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 346 l~LiDTPG~~~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
+.||||||++. +...+..++..+|++|||+|++.+. .....++...++..+.| +|+|+||+|+
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--------s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA--------TATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 99999999763 3344556788899999999999773 22344556666666666 9999999998
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.....+ .. .+...++.. .++|||++|.|+.++++.+.
T Consensus 159 ~~~~~~--------~~-~~~~~g~~~----~~~iSA~~g~gi~eL~~~i~ 195 (472)
T PRK03003 159 ERGEAD--------AA-ALWSLGLGE----PHPVSALHGRGVGDLLDAVL 195 (472)
T ss_pred Cccchh--------hH-HHHhcCCCC----eEEEEcCCCCCcHHHHHHHH
Confidence 632111 11 112345432 37999999999999987654
No 171
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=5.2e-17 Score=150.27 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=99.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|++|+|||||+++|++..... ......+.........+.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 56 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-----------------------------GQGATIGVDFMIKTVEIKGEKI 56 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 45899999999999999999998321100 0011112222222233444446
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||+..|...+..++..+|++|+|+|+..+. .+..+..+..++ ..+...++| +|+|+||+|+.... +.
T Consensus 57 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l-~~~~~~~~~-~i~v~NK~D~~~~~-~i 130 (169)
T cd04114 57 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCLPEWLREI-EQYANNKVI-TILVGNKIDLAERR-EV 130 (169)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHH-HHhCCCCCe-EEEEEECccccccc-cc
Confidence 7899999999999988888999999999999998652 222121111111 111122344 89999999987421 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+.+.+... . ...++++||++|.|+.++|+.+
T Consensus 131 ~~~~~~~~~~~---~-----~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 131 SQQRAEEFSDA---Q-----DMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred CHHHHHHHHHH---c-----CCeEEEeeCCCCCCHHHHHHHH
Confidence 12222222222 1 2468999999999999998754
No 172
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=1.9e-17 Score=187.25 Aligned_cols=165 Identities=28% Similarity=0.373 Sum_probs=131.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++++|||||+++|++..+.+.+.. . . . ...+.+|....++.+|+|++.....+.+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~--~------v-~----~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 72 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG--E------V-H----DGAATMDWMEQEQERGITITSAATTCFWKG 72 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccc--c------c-c----CCccccCCChhHhhcCCCccceeEEEEECC
Confidence 4678999999999999999999997766543210 0 0 0 113578888999999999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++|||||||.+|...+..++..+|++|+|||+..+ ...+++.++.++...++| +|+++||+|+....
T Consensus 73 ~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 567888999999888888 78999999998532
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCC
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGe 457 (519)
+..+.+++...+.... ....+|+|+..+.
T Consensus 142 -~~~~~~~i~~~l~~~~----~~~~iPis~~~~f 170 (691)
T PRK12739 142 -FFRSVEQIKDRLGANA----VPIQLPIGAEDDF 170 (691)
T ss_pred -HHHHHHHHHHHhCCCc----eeEEecccccccc
Confidence 4455566665553221 1345789997764
No 173
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.72 E-value=2.5e-17 Score=153.48 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=99.6
Q ss_pred EEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEE
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~L 348 (519)
|+|+|..|+|||||+++|.+.... . ...++.|.. ...+......+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~---------------------------~~~pt~g~~----~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--E---------------------------SVVPTTGFN----SVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--c---------------------------cccccCCcc----eEEEeeCCeEEEE
Confidence 899999999999999999843110 0 001111211 1224456789999
Q ss_pred EeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHH
Q 010046 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSI 428 (519)
Q Consensus 349 iDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i 428 (519)
|||||+.+|...+..+++.+|++|||+|++... .+.....++..++......|+++|+||+|+... .....+
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~------s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i 120 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE------RLPLARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEI 120 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHH
Confidence 999999999999999999999999999998652 122233333334333233459999999998643 222233
Q ss_pred HHHH--HHHHHhcCCCCCCceEEEecccc------CCCccccccc
Q 010046 429 KVQL--GTFLRSCGFKDASLTWIPLSALE------NQNLVTAPDD 465 (519)
Q Consensus 429 ~e~l--~~~l~~~g~~~~~i~~IpvSA~t------GegI~el~~~ 465 (519)
.+.+ ..+. ....+.++++||++ ++||.++|..
T Consensus 121 ~~~~~~~~~~-----~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 121 HKELELEPIA-----RGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred HHHhCChhhc-----CCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 2222 2221 12346789998888 9999999864
No 174
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.72 E-value=4.3e-17 Score=162.71 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|..|+|||||+++|++..... ...++.+ ........+....+.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-----------------------------~y~pTi~-d~~~k~~~i~~~~~~l 50 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-----------------------------QYTPTIE-DFHRKLYSIRGEVYQL 50 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCChh-HhEEEEEEECCEEEEE
Confidence 479999999999999999998321100 0000011 1111222344445788
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-------HhCCCcEEEEEeeccccc
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-------SFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-------~~~~ppiIVVvNKiDlv~ 419 (519)
.||||+|++.|......++..+|++|||+|++... +++.+..+..++..... .....|+|||+||+|+..
T Consensus 51 ~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 51 DILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 99999999999887777888999999999999762 33333333333332210 112235999999999974
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
...... +++..++... ..+.++++||++|.||.++|+.+.
T Consensus 128 ~~~v~~----~ei~~~~~~~----~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 128 PREVQR----DEVEQLVGGD----ENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred ccccCH----HHHHHHHHhc----CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 222222 2333333221 135789999999999999998664
No 175
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=3.7e-17 Score=156.91 Aligned_cols=158 Identities=19% Similarity=0.171 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|..|+|||||+++|++..... . ...+.+ ........+......+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~---------------------------~~~t~~-~~~~~~~~~~~~~~~l~ 50 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--K---------------------------YRRTVE-EMHRKEYEVGGVSLTLD 50 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--c---------------------------CCCchh-hheeEEEEECCEEEEEE
Confidence 58999999999999999998432100 0 000000 01111222333346789
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
||||||+..|......++..+|++|||+|++... .++.+..+...+..+....+.| +|||+||+|+... ...+.
T Consensus 51 i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~-~~~v~- 124 (198)
T cd04147 51 ILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEE-ERQVP- 124 (198)
T ss_pred EEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEccccccc-ccccc-
Confidence 9999999999888788899999999999998752 2222222223333322223445 9999999998742 11111
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 428 i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+...+... .. .+..++++||++|.||.++|+.+
T Consensus 125 -~~~~~~~~~-~~---~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 125 -AKDALSTVE-LD---WNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred -HHHHHHHHH-hh---cCCcEEEecCCCCCCHHHHHHHH
Confidence 111111111 11 12467999999999999999764
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=1e-16 Score=145.59 Aligned_cols=155 Identities=22% Similarity=0.221 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
...+|+++|.+|+|||||+|+|++........ ....+.......+.....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC------------------------------CCCceeceEEEEEEcCCe
Confidence 45789999999999999999998543211110 011122222222334567
Q ss_pred EEEEEeCCCCCcch--------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~f~--------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.||||||+.... ......+..+|++++|+|+... ......++...+...+.| +++|+||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--------IGEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--------cCchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 89999999975432 2334567889999999999976 223344455555555566 899999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+... ...+......+.. ..+ ..+++++|++++.|+.++++.+
T Consensus 123 l~~~-~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 123 LVKD-KEDLLPLLEKLKE---LGP----FAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred cccc-HHHHHHHHHHHHh---ccC----CCceEEEEeccCCChHHHHHHH
Confidence 8732 2222333333222 221 2467999999999999987643
No 177
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.71 E-value=4.4e-17 Score=147.61 Aligned_cols=143 Identities=24% Similarity=0.217 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+++|++|+|||||+++|++....... ..++++.......+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS------------------------------DIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc------------------------------CCCCCccceEEEEEEeCCEEE
Confidence 47999999999999999999853221111 113344443334445567789
Q ss_pred EEEeCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 347 ~LiDTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
++|||||+.++.. .....+..+|++++|+|+..... ..... .+......|+|+|+||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~--------~~~~~---~~~~~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLD--------EEDLE---ILELPADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCC--------HHHHH---HHHhhcCCCEEEEEEchhcC
Confidence 9999999876543 23456778999999999996521 11111 12212334599999999998
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. ... . ......+++++||+++.|+.++++.+
T Consensus 121 ~~--~~~---------~-----~~~~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 121 PD--SEL---------L-----SLLAGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred Cc--ccc---------c-----cccCCCceEEEECCCCCCHHHHHHHH
Confidence 43 111 1 11123578999999999999997643
No 178
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.71 E-value=4.7e-17 Score=146.98 Aligned_cols=152 Identities=21% Similarity=0.169 Sum_probs=96.3
Q ss_pred EEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEE
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~L 348 (519)
|+|+|++|||||||+++|.+..... ...++.+. ... .+......+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~--~~~--~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-----------------------------DTIPTVGF--NMR--KVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-----------------------------CccCCCCc--ceE--EEEECCEEEEE
Confidence 8999999999999999998532100 00011111 111 12234578999
Q ss_pred EeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccchhH
Q 010046 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 349 iDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
|||||+..|...+..++..+|++++|+|++... .+.....++..++.. .+.| +++|+||+|+... ...
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~--~~~ 119 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT------ALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA--LSV 119 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC--cCH
Confidence 999999999998889999999999999998641 111122222222221 2344 9999999998742 222
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+.+.+ .........++++++||++|.|+.++++.+
T Consensus 120 ~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 120 DELIEQM----NLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred HHHHHHh----CcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 2222111 111112234678999999999999997643
No 179
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=6.3e-17 Score=144.75 Aligned_cols=155 Identities=25% Similarity=0.284 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC--
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-- 343 (519)
.+||+|+|.+|+|||||+++|++.. .+ .+..++++.......+...+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FI------------------------------TEYKPGTTRNYVTTVIEEDGKT 49 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-Cc------------------------------CcCCCCceeeeeEEEEEECCEE
Confidence 3689999999999999999998432 11 11123444444433333344
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccch-hHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTA-KGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l-~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.+|||||+.++..........++.+++++|..... .++... ..+...+..++.. +.| +++|+||+|+....
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v--~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~- 124 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILV--LDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK- 124 (161)
T ss_pred EEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeee--hhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-
Confidence 78899999999998777666666777777777766431 111111 1333333333322 445 99999999997432
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
+...+...+...+. .+++++||++|.|+.++++.
T Consensus 125 -----~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 125 -----LKTHVAFLFAKLNG----EPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred -----hhHHHHHHHhhccC----CceEEeecCCCCCHHHHHHH
Confidence 33444444444443 35899999999999999764
No 180
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=6.1e-17 Score=168.25 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=102.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-C
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-~ 342 (519)
+-...|+|||.+|||||||+++|+.....+ ...+++|+......+.. .
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~v-------------------------------a~ypfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKI-------------------------------ADYPFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCcc-------------------------------CCCCCceeCceEEEEEeCC
Confidence 345679999999999999999998532211 00123333333333333 4
Q ss_pred CeEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 343 NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 343 ~~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
...|+||||||+.+ +...++.++..++++|+|||++... .++.+..+..++..+...+..+|+|||+||+
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKi 281 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKYSPELADKPRILVLNKI 281 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHhhhhcccCCeEEEEECc
Confidence 56799999999642 4456677888999999999998642 2333444444444443333334599999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+... .... .+.+..+++.. .++++++||++++||.++++.+
T Consensus 282 DL~~~--~~~~--~~~~~~~~~~~-----~~~i~~iSAktg~GI~eL~~~L 323 (335)
T PRK12299 282 DLLDE--EEER--EKRAALELAAL-----GGPVFLISAVTGEGLDELLRAL 323 (335)
T ss_pred ccCCc--hhHH--HHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHHHH
Confidence 99743 2111 11222222222 2478999999999999998744
No 181
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.71 E-value=5.1e-17 Score=152.43 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||+|+|.+|+|||||+++|++....... .+..+... .....+......+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~~~~ 51 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY-----------------------------YPTIENTF-SKIIRYKGQDYHL 51 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc-----------------------------CcchhhhE-EEEEEECCEEEEE
Confidence 58999999999999999999843211000 00000000 1111223334678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccch
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~e 423 (519)
.||||||+.+|......++..++++|+|+|++... .++ ........++.. .+.| +|+|+||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~ 124 (180)
T cd04137 52 EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK---SFE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQV 124 (180)
T ss_pred EEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCcc
Confidence 99999999999888888899999999999999752 222 222222333332 2344 9999999998742111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+.+..+.+.++ .+++++||++|.|+.+++..+
T Consensus 125 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 125 S----TEEGKELAESWG-----AAFLESSARENENVEEAFELL 158 (180)
T ss_pred C----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 1 112233333333 478999999999999998754
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=3.3e-17 Score=175.18 Aligned_cols=148 Identities=24% Similarity=0.266 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|||++|||||||+|+|++....+ ....+|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999999543221 112356666666666677788999
Q ss_pred EEeCCCCC--------cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 348 VLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 348 LiDTPG~~--------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
||||||+. .+...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|+..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 99999963 3445566778899999999999976 445666777788777776 999999999874
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.... .. .+..+|+. .++++||++|.|+.++++.+.
T Consensus 122 ~~~~-----~~----~~~~lg~~----~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 122 EDAV-----AA----EFYSLGFG----EPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred cccc-----HH----HHHhcCCC----CeEEEeCCcCCChHHHHHHHH
Confidence 2111 11 12344543 469999999999999987653
No 183
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=6.8e-17 Score=151.28 Aligned_cols=160 Identities=16% Similarity=0.021 Sum_probs=101.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.+||+|+|.+|+|||||+++|++....+ ....++.+.........+....
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~----------------------------~~~~~T~~~~~~~~~~~~~~~~ 53 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL----------------------------NAYSPTIKPRYAVNTVEVYGQE 53 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCc----------------------------ccCCCccCcceEEEEEEECCeE
Confidence 356899999999999999999998432100 0011112222222223344445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.+||++|++.+......++..+|++|||+|++... + +... .++...+......|+|+|+||+|+......
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s---~~~~-~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~ 126 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---S---FSYC-AEVYKKYFMLGEIPCLFVAAKADLDEQQQR 126 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---H---HHHH-HHHHHHhccCCCCeEEEEEEcccccccccc
Confidence 67899999999999888888889999999999998651 1 1111 122222222223459999999998642111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ......+.+.+++. .++++||++|.|+.++|+.+
T Consensus 127 ~----~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 127 Y----EVQPDEFCRKLGLP----PPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred c----ccCHHHHHHHcCCC----CCEEEEeccCccHHHHHHHH
Confidence 1 11223333444542 24899999999999998754
No 184
>PLN03108 Rab family protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=154.54 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|.+|+|||||+++|++..... ....+.+.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-----------------------------~~~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCccceEEEEEEEECCEEEE
Confidence 4789999999999999999998432110 00112233333333344444567
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchh
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||++.|...+..+++.+|++|+|+|++... . +.....+...+.... ...|+|+|+||+|+.......
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s---~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~ 130 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---T---FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS 130 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---H---HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC
Confidence 899999999999988888999999999999998652 1 222222222222221 234599999999987422111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+++..+ ++++++||++|.||.++|..+
T Consensus 131 ----~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 131 ----TEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 223334444444 478999999999999998754
No 185
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.2e-17 Score=168.01 Aligned_cols=156 Identities=28% Similarity=0.398 Sum_probs=134.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
.|+..|+...|||||+.+|.+. ..+...++..+|+|+++.+.++...+..+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~----------------------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG----------------------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc----------------------------ccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 4889999999999999999843 235566778899999999999999999999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
|+|.|||++|...++.++...|+++|||++.+| ++.++.||+.++..++.++.|||+||+|++ +..++++
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~--d~~r~e~ 123 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRV--DEARIEQ 123 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEeccccc--cHHHHHH
Confidence 999999999999999999999999999999988 789999999999999999999999999998 4445554
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 428 i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+++...+ .+ .+.++|++||.+|+||.+|...+
T Consensus 124 ~i~~Il~~l---~l--~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 124 KIKQILADL---SL--ANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred HHHHHHhhc---cc--ccccccccccccCCCHHHHHHHH
Confidence 444444444 34 34567999999999999997755
No 186
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.70 E-value=6.8e-17 Score=147.03 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|++|+|||||+++|++... . ... . +..+ ........+......+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~-~~~----------------------~-----~~~~-~~~~~~~~~~~~~~~~~ 50 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-V-EEY----------------------D-----PTIE-DSYRKTIVVDGETYTLD 50 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-C-cCc----------------------C-----CChh-HeEEEEEEECCEEEEEE
Confidence 599999999999999999984321 0 000 0 0000 01111122333356889
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccccccchhH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~~~e~l 425 (519)
+||+||+..+.......+..+|++|+|+|.....+ +.........+..... .+|+++|+||+|+.......
T Consensus 51 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 123 (160)
T cd00876 51 ILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES------FEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS- 123 (160)
T ss_pred EEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec-
Confidence 99999999988888888999999999999986521 2222222223333222 34599999999987522111
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+..+++..+ .+++++||++|.|+.++++.+
T Consensus 124 ---~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 124 ---KEEGKALAKEWG-----CPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred ---HHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHHH
Confidence 233444444444 478999999999999998754
No 187
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=9.2e-17 Score=161.74 Aligned_cols=175 Identities=27% Similarity=0.345 Sum_probs=125.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|++|+|||||+++|++..+.+.+.... .. -.+..+....++.+++++......+.+.+..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v-------~~------g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSV-------ED------GTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCee-------cC------CcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 58999999999999999999766544332100 00 013345555666777887777777888889999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
||||||+.+|...+..++..+|++|+|+|+..+ ...++..++..+...+.| +++|+||+|+... .++.
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g--------~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~---~~~~ 135 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSG--------VEVGTEKLWEFADEAGIP-RIIFINKMDRERA---DFDK 135 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCccCCC---CHHH
Confidence 999999999999999999999999999999977 334566667777777877 8899999998743 3444
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCcccc
Q 010046 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYW 473 (519)
Q Consensus 428 i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~ 473 (519)
..+.++..+ +. .+--+.+...+|.|+..+.+.+....|.+
T Consensus 136 ~~~~l~~~~---~~---~~~~~~ip~~~~~~~~~~vd~~~~~~~~~ 175 (268)
T cd04170 136 TLAALQEAF---GR---PVVPLQLPIGEGDDFKGVVDLLTEKAYIY 175 (268)
T ss_pred HHHHHHHHh---CC---CeEEEEecccCCCceeEEEEcccCEEEEc
Confidence 555555543 22 12224556788888888776655555544
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.70 E-value=2.1e-16 Score=147.18 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||+|+|.+|+|||||+++|++..... ...+..+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-----------------------------VYVPTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccccce-EEEEEECCEEEEE
Confidence 579999999999999999998421100 0000111111 1122344455678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||||++++...+..++..+|++++|+|+.... +++ .....+...+.. ....|+|+|+||+|+..... ..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~ 124 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH-TR 124 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCCEEEEeeChhcccChh-hh
Confidence 99999999998887777889999999999998652 222 221112222222 22335999999999864211 11
Q ss_pred HHH---------HHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 426 DSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 426 e~i---------~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+ ....+.+.+..+ ...++++||++|.|+.++|..+
T Consensus 125 ~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~lf~~l 170 (175)
T cd01870 125 RELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVREVFEMA 170 (175)
T ss_pred hhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHHHHHHH
Confidence 111 123333333333 2478999999999999998754
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.70 E-value=3.7e-17 Score=152.64 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|||||||+++|.+... . ...++.|.+. ..+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~---~---------------------------~~~~t~g~~~----~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP---K---------------------------KVAPTVGFTP----TKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC---c---------------------------cccCcccceE----EEEEECCEEEE
Confidence 489999999999999999984210 0 0111122221 12334678899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccchhH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
||||||+..+...+..++..+|++|||+|++... . +.....++..++.. ....|++||+||+|+... ...
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~ 118 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---R---VQEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLG 118 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---H---HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCH
Confidence 9999999999999999999999999999998651 1 22222233333322 122459999999998743 212
Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEEeccccC------CCcccccc
Q 010046 426 DSIKVQLGTFLRSCGFK-DASLTWIPLSALEN------QNLVTAPD 464 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~-~~~i~~IpvSA~tG------egI~el~~ 464 (519)
.++.+.+. +..+.-. ...+.++++||++| .||.+.|+
T Consensus 119 ~~i~~~~~--l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~ 162 (167)
T cd04161 119 ADVIEYLS--LEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLR 162 (167)
T ss_pred HHHHHhcC--cccccCCCCceEEEEEeEceeCCCCccccCHHHHHH
Confidence 22222221 1111100 12357899999998 78988754
No 190
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.70 E-value=1.2e-16 Score=156.96 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|||..|+|||||+++|+..... ....++.+.... ....++.....+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-----------------------------~~y~pTi~~~~~-~~~~~~~~~v~L 51 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-----------------------------GSYVPTVFENYT-ASFEIDKRRIEL 51 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CccCCccccceE-EEEEECCEEEEE
Confidence 68999999999999999999842110 001111111111 122344556789
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccchhH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
.||||+|++.|...+..+++.+|++|+|+|.+... . +......+...+.. ....|+|||+||+|+.... ..+
T Consensus 52 ~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---S---f~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~~~ 124 (222)
T cd04173 52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---T---LDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-ATL 124 (222)
T ss_pred EEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-hhh
Confidence 99999999999998888999999999999999762 2 22222222222222 2223599999999986421 111
Q ss_pred H---------HHHHHHHHHHHhcCCCCCCceEEEeccccCCC-cccccccccc
Q 010046 426 D---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDDGIR 468 (519)
Q Consensus 426 e---------~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGeg-I~el~~~i~~ 468 (519)
. ...++...+.+..|. ++|+++||++++| |.++|..+.+
T Consensus 125 ~~~~~~~~~pIs~e~g~~~ak~~~~----~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 125 RELSKQRLIPVTHEQGTVLAKQVGA----VSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred hhhhhccCCccCHHHHHHHHHHcCC----CEEEEcCCCcCCcCHHHHHHHHHH
Confidence 1 112344445445542 4789999999995 9999986543
No 191
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=8.4e-17 Score=166.93 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=101.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+....|+|||.+|||||||+++|......+.. .+.+|.......+...+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~-------------------------------y~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIAD-------------------------------YPFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccC-------------------------------CCCCccCCEEEEEEeCC
Confidence 34567999999999999999999843221100 01112211112223333
Q ss_pred -eEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 344 -YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 -~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
..++||||||+.. +...+++++..++++|+|+|++.......++.+..+..++..+...+..+|+|||+||+
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 7899999999642 34456677788999999999986421123333444444444443333334599999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+... ..++.+.+.+. +..+ ++++++||++++||.++++.+
T Consensus 284 DL~~~--~~~~~~~~~l~---~~~~-----~~vi~iSAktg~GI~eL~~~I 324 (329)
T TIGR02729 284 DLLDE--EELAELLKELK---KALG-----KPVFPISALTGEGLDELLYAL 324 (329)
T ss_pred cCCCh--HHHHHHHHHHH---HHcC-----CcEEEEEccCCcCHHHHHHHH
Confidence 99742 22333333332 2233 468999999999999997643
No 192
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=153.36 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=95.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|||||||+|+|.+... .....+|+|.......+ .
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~--~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNHYDW--G-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceEEee--c--
Confidence 457899999999999999999984321 01112355544332222 2
Q ss_pred EEEEEeCCCC-----------Ccchhhhhh----ccccCCeEEEEeecCCCccc-cccc--chhHHHHHHHHHHHHhCCC
Q 010046 345 HVVVLDSPGH-----------KDFVPNMIS----GATQSDAAILVIDASVGSFE-VGMN--TAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 345 ~l~LiDTPG~-----------~~f~~~~~~----~l~~aD~vIlVVDas~g~~e-~~~~--~l~~~~~e~l~ll~~~~~p 406 (519)
.+.||||||+ +.+...+.. .+..++++++|+|+...... ..+. .......++...+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 344443333 33457899999998643100 0000 0112345556666666766
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC----CCCceEEEeccccCCCcccccccc
Q 010046 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK----DASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~----~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|||+||+|+.... +...+++.. .+++. ....+++++||++| ||.++++.+
T Consensus 133 -~iiv~NK~Dl~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l 187 (201)
T PRK04213 133 -PIVAVNKMDKIKNR----DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAI 187 (201)
T ss_pred -eEEEEECccccCcH----HHHHHHHHH---HhcCCccccccCCcEEEEecccC-CHHHHHHHH
Confidence 89999999987432 112223322 23321 11236899999999 999998644
No 193
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.70 E-value=8.4e-17 Score=152.03 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=109.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|..|||||||+++|...... ...++.| .....+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~------------------------------~~~pT~g----~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS------------------------------ETIPTIG----FNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE------------------------------EEEEESS----EEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc------------------------------ccCcccc----cccceeeeCc
Confidence 57789999999999999999999832110 0111222 2333455578
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.|||.+|+..+...+..++..+|++|||||++.. +.+.....++..++.. ....|++|++||.|+.+.
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~------~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~- 130 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDP------ERLQEAKEELKELLNDPELKDIPILILANKQDLPDA- 130 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGG------GGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS-
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEecccc------eeecccccchhhhcchhhcccceEEEEeccccccCc-
Confidence 9999999999999999999999999999999999964 2234444444454442 233459999999998743
Q ss_pred chhHHHHHHHHHHHHHhcCCC-CCCceEEEeccccCCCcccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~-~~~i~~IpvSA~tGegI~el~~ 464 (519)
...+++ ...+....+. ...+.++++||++|+|+.+.++
T Consensus 131 -~~~~~i----~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 131 -MSEEEI----KEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLE 169 (175)
T ss_dssp -STHHHH----HHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHH
T ss_pred -chhhHH----HhhhhhhhcccCCceEEEeeeccCCcCHHHHHH
Confidence 222333 3333333333 5568899999999999999864
No 194
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.69 E-value=1.5e-16 Score=174.43 Aligned_cols=154 Identities=28% Similarity=0.390 Sum_probs=119.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|++++|||||+++|+...+.+...... .++++.. ...+|....++.+|+++......+++.
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v--------~~~g~~~-~t~~D~~~~E~~rgisi~~~~~~~~~~ 78 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAV--------KGRGSQR-HAKSDWMEMEKQRGISITTSVMQFPYR 78 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCcccccee--------ccccccc-cccCCCCHHHHhcCCcEEEEEEEEeeC
Confidence 3567899999999999999999999777665443211 0111111 123677788889999999998999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..+.|||||||.+|...+..++..+|++|+|||+..+ +..++..++.++...++| +|+++||+|+...+
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~- 148 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD- 148 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECccccCCC-
Confidence 99999999999999999999999999999999999976 456677777777777776 99999999986432
Q ss_pred hhHHHHHHHHHHHHH
Q 010046 423 DRFDSIKVQLGTFLR 437 (519)
Q Consensus 423 e~le~i~e~l~~~l~ 437 (519)
++++.+.++..+.
T Consensus 149 --~~~ll~~i~~~l~ 161 (527)
T TIGR00503 149 --PLELLDEVENELK 161 (527)
T ss_pred --HHHHHHHHHHHhC
Confidence 3445566666654
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=8.4e-17 Score=172.56 Aligned_cols=149 Identities=23% Similarity=0.260 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|||||||+|+|++....+. ...+|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v------------------------------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------CCCCCCcccceEEEEEECCcEE
Confidence 4799999999999999999985432111 1124555555555556667899
Q ss_pred EEEeCCCCCc--------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 347 VVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 347 ~LiDTPG~~~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.||||||+.. +......++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|+.
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~--------~~~~~~~~~~~l~~~~~p-iilv~NK~D~~ 122 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG--------LTPADEEIAKILRKSNKP-VILVVNKVDGP 122 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccCc
Confidence 9999999887 233345677889999999999976 334455666677777766 99999999975
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.. . ..+..+ ..+|+. .++++||++|.|+.++++.+.
T Consensus 123 ~~-~-------~~~~~~-~~lg~~----~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 123 DE-E-------ADAYEF-YSLGLG----EPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred cc-h-------hhHHHH-HhcCCC----CCEEEEeeCCCCHHHHHHHHH
Confidence 31 1 111111 234543 359999999999999988664
No 196
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.69 E-value=2.9e-16 Score=144.20 Aligned_cols=155 Identities=20% Similarity=0.178 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|..++|||||+++|.+... .....++.|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-----------------------------PENYIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-----------------------------TSSSETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-----------------------------ccccccccccccccccccccccccccc
Confidence 699999999999999999984211 011222334444444455666667899
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccccchhHH
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~~~e~le 426 (519)
|||++|+++|.......+..+|++|+|+|.+.. .+++ ....+...+..... .+|+|||+||.|+.....-.
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~---~S~~---~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~-- 123 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE---ESFE---NLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS-- 123 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBH---HHHH---THHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC--
T ss_pred ccccccccccccccccccccccccccccccccc---cccc---ccccccccccccccccccceeeeccccccccccch--
Confidence 999999999988888889999999999999876 3333 33333333333333 35699999999988522211
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+.+.++ .+++++||+++.||.++|..+
T Consensus 124 --~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 124 --VEEAQEFAKELG-----VPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp --HHHHHHHHHHTT-----SEEEEEBTTTTTTHHHHHHHH
T ss_pred --hhHHHHHHHHhC-----CEEEEEECCCCCCHHHHHHHH
Confidence 234455555554 488999999999999998754
No 197
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.69 E-value=1.4e-16 Score=156.18 Aligned_cols=154 Identities=18% Similarity=0.089 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|+...... .......+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~----------------------------~~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD----------------------------HAYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc----------------------------cCcCCCccccceEEEEEECCEEEEE
Confidence 479999999999999999997321100 0011111111222233344556789
Q ss_pred EEEeCCCCCcchhhhhhccc-cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh---CCCcEEEEEeecccccccc
Q 010046 347 VVLDSPGHKDFVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~-~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~~ppiIVVvNKiDlv~~~~ 422 (519)
.||||||++.+.. ...+. .+|++|+|+|++... ++... . +++..+... ...|+|+|+||+|+.....
T Consensus 53 ~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~---S~~~~---~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~ 123 (221)
T cd04148 53 VVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRS---SFERA---S-ELRIQLRRNRQLEDRPIILVGNKSDLARSRE 123 (221)
T ss_pred EEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHH---HHHHH---H-HHHHHHHHhcCCCCCCEEEEEEChhccccce
Confidence 9999999983322 23445 899999999999762 22222 2 222222221 2234999999999874321
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... ++...+....+ +.++++||++|.||.++|+.+
T Consensus 124 v~~----~~~~~~a~~~~-----~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 124 VSV----QEGRACAVVFD-----CKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred ecH----HHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHHH
Confidence 111 11222333333 468999999999999998754
No 198
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=1e-16 Score=148.84 Aligned_cols=152 Identities=21% Similarity=0.158 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|..|+|||||+.+++...... ...+..+. . .....+......+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-----------------------------~~~~~~~~-~-~~~i~~~~~~~~l 49 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-----------------------------LESPEGGR-F-KKEVLVDGQSHLL 49 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC-----------------------------CCCCCccc-e-EEEEEECCEEEEE
Confidence 479999999999999999998321100 00000111 1 1122334444678
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchh
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||+|++.. .++..+|++|+|+|.+... +++.+ ..++..+.... ...|+++|+||+|+.......
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~---sf~~~---~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~ 118 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEA---SFQTV---YNLYHQLSSYRNISEIPLILVGTQDAISESNPRV 118 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHH---HHHHH---HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc
Confidence 99999999752 3456799999999999763 33322 22222222221 223599999999985321111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+. .++..++.+..+ ++.|++|||++|.||.++|..+
T Consensus 119 v~--~~~~~~~~~~~~----~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 119 ID--DARARQLCADMK----RCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred cC--HHHHHHHHHHhC----CCcEEEEecCCCCCHHHHHHHH
Confidence 11 122233333321 3578999999999999999754
No 199
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=2.2e-16 Score=149.98 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=99.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|++|||||||+++|++.... .......|.|.......+ ..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~---~~ 70 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNL-----------------------------ARTSKTPGRTQLINFFEV---ND 70 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCc-----------------------------ccccCCCCceeEEEEEec---CC
Confidence 5678999999999999999999953110 001112344443333222 36
Q ss_pred EEEEEeCCCCC----------cchhhhhhcc---ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEE
Q 010046 345 HVVVLDSPGHK----------DFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (519)
Q Consensus 345 ~l~LiDTPG~~----------~f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVV 411 (519)
.+.||||||+. .+......++ ..++++++|+|+..+ ......++...+...+.| ++++
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHHHHcCCc-EEEE
Confidence 89999999953 2222223333 345788899998865 223334455556666766 8999
Q ss_pred EeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 412 vNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+||+|+.. ....+.+.+.+...+... ...++++||++|+|+.++++.+
T Consensus 142 ~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~l~~~i 189 (196)
T PRK00454 142 LTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDELRAAI 189 (196)
T ss_pred EECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHHHHHHH
Confidence 99999973 334444555555555443 3477999999999999998643
No 200
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.69 E-value=6.7e-17 Score=186.20 Aligned_cols=170 Identities=25% Similarity=0.324 Sum_probs=128.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~- 341 (519)
..+.++|+|+||+++|||||+++|++..+.+.... ....+.+|....++.+|+|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~---------------~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV---------------AGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc---------------CCceeeccCcHHHHHhCCceecceeEEEee
Confidence 45678999999999999999999998877654421 11234578889999999998865444443
Q ss_pred ---------------CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC
Q 010046 342 ---------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 342 ---------------~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p 406 (519)
.++.++|||||||.+|...+..+++.+|++|+|||+..| +..+++.++.++...++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G--------v~~~t~~~~~~~~~~~~p 152 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--------VCVQTETVLRQALGERIR 152 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC--------CcccHHHHHHHHHHCCCC
Confidence 367889999999999999999999999999999999988 667889999999888888
Q ss_pred cEEEEEeecccccc----cc----hhHHHHHHHHHHHHHhcC--------CCCCCceEEEeccccC
Q 010046 407 QLIVAVNKMDAVQY----SK----DRFDSIKVQLGTFLRSCG--------FKDASLTWIPLSALEN 456 (519)
Q Consensus 407 piIVVvNKiDlv~~----~~----e~le~i~e~l~~~l~~~g--------~~~~~i~~IpvSA~tG 456 (519)
+||++||||+... +. ..+..+.+++...+..++ +.+..-.+++.|+..|
T Consensus 153 -~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~ 217 (843)
T PLN00116 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHG 217 (843)
T ss_pred -EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccC
Confidence 8999999998721 11 355666666664444332 1122223466677665
No 201
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.69 E-value=2.3e-16 Score=152.69 Aligned_cols=149 Identities=21% Similarity=0.150 Sum_probs=98.3
Q ss_pred EcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEeC
Q 010046 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (519)
Q Consensus 272 VG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiDT 351 (519)
+|..|||||||+++|++... .....++.|.........+......+.||||
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-----------------------------~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt 51 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTNRGPIRFNVWDT 51 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-----------------------------CCCCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 69999999999999983211 0011122333333333344556688999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHH
Q 010046 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQ 431 (519)
Q Consensus 352 PG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~ 431 (519)
||+++|...+..+++.+|++|+|+|++... +++.+..+..++.. .....|+|||+||+|+... .... +.
T Consensus 52 ~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~---S~~~i~~w~~~i~~---~~~~~piilvgNK~Dl~~~-~v~~----~~ 120 (200)
T smart00176 52 AGQEKFGGLRDGYYIQGQCAIIMFDVTARV---TYKNVPNWHRDLVR---VCENIPIVLCGNKVDVKDR-KVKA----KS 120 (200)
T ss_pred CCchhhhhhhHHHhcCCCEEEEEEECCChH---HHHHHHHHHHHHHH---hCCCCCEEEEEECcccccc-cCCH----HH
Confidence 999999999999999999999999999763 23222222222222 2223349999999998632 1111 11
Q ss_pred HHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 432 LGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 432 l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+ .+.+.. ++.|+++||++|+||.++|..+
T Consensus 121 ~-~~~~~~-----~~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 121 I-TFHRKK-----NLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred H-HHHHHc-----CCEEEEEeCCCCCCHHHHHHHH
Confidence 1 222222 3588999999999999999855
No 202
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=2e-16 Score=173.26 Aligned_cols=152 Identities=28% Similarity=0.408 Sum_probs=117.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|++..+.+...... .++. -.....+|....++.+|+++......+.+.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 467899999999999999999999877765443211 0000 0011235667788889999998888899999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
+.++|||||||.+|...+..++..+|++|+|+|+..+ +..++..++.++...++| +|+++||+|+....
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~-- 147 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGRE-- 147 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccC--
Confidence 9999999999999999999999999999999999977 456778888888888887 99999999987532
Q ss_pred hHHHHHHHHHHHH
Q 010046 424 RFDSIKVQLGTFL 436 (519)
Q Consensus 424 ~le~i~e~l~~~l 436 (519)
+.++.+.++..+
T Consensus 148 -~~~~l~~i~~~l 159 (526)
T PRK00741 148 -PLELLDEIEEVL 159 (526)
T ss_pred -HHHHHHHHHHHh
Confidence 233445555444
No 203
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=4.5e-17 Score=146.95 Aligned_cols=135 Identities=22% Similarity=0.236 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|++|+|||||+|+|++... ... + |... ++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-------------------------------~~~--~--t~~~-----~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-------------------------------LYK--K--TQAV-----EYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-------------------------------ccc--c--ceeE-----EEcC---e
Confidence 799999999999999999984211 000 0 1111 1111 6
Q ss_pred EEeCCCCC----cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 348 VLDSPGHK----DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 348 LiDTPG~~----~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
+|||||+. .+...+...++.+|++|+|+|++.+.+. . ...+... ... |+|+|+||+|+... ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~---~-----~~~~~~~---~~~-p~ilv~NK~Dl~~~-~~ 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESR---F-----PPGFASI---FVK-PVIGLVTKIDLAEA-DV 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcC---C-----ChhHHHh---ccC-CeEEEEEeeccCCc-cc
Confidence 89999973 2333334467899999999999877432 1 1112221 233 59999999998742 11
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+.+..+++..++ .+++++||++|.|+.++|+.+
T Consensus 106 ~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 106 D----IERAKELLETAGA----EPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred C----HHHHHHHHHHcCC----CcEEEEecCCCCCHHHHHHHH
Confidence 1 2233444444443 367999999999999998643
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=3.1e-16 Score=178.10 Aligned_cols=151 Identities=23% Similarity=0.325 Sum_probs=109.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
...+|+|+|++|||||||+|+|++....+ ....+|+|.+.......+.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~~pGvT~d~~~~~~~~~~~ 323 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VEDTPGVTRDRVSYDAEWAGT 323 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCeeEEEEEEEEEECCE
Confidence 35689999999999999999999532211 122367777776666777788
Q ss_pred EEEEEeCCCCCc--------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.||||||+.. +...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~p-vIlV~NK~D 394 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKP-VVLAVNKID 394 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 999999999763 344556678899999999999876 345556667777777766 999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+... .. ....+ ...++.. .+++||++|.||.++++.+.
T Consensus 395 ~~~~--~~------~~~~~-~~lg~~~----~~~iSA~~g~GI~eLl~~i~ 432 (712)
T PRK09518 395 DQAS--EY------DAAEF-WKLGLGE----PYPISAMHGRGVGDLLDEAL 432 (712)
T ss_pred cccc--hh------hHHHH-HHcCCCC----eEEEECCCCCCchHHHHHHH
Confidence 8632 11 11111 2234432 38999999999999987643
No 205
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.5e-16 Score=168.43 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=99.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC-e
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-~ 344 (519)
...|+|||.+|||||||+|+|+.....+ ...+++|.......+...+ .
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~v-------------------------------s~~p~TT~~p~~Giv~~~~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKV-------------------------------ADYPFTTLVPNLGVVRVDDER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCCccCcEEEEEEeCCCc
Confidence 4469999999999999999998543211 1113333333333344443 4
Q ss_pred EEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 345 ~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
.|+|+||||... ....++.++..+|++|+|||++.......++.+..+..++..+...+..+|+|||+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 699999999543 3445667889999999999987210011122222333333333333333458999999998
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. ...+ .+.+..+.+..++ ...++++||+++.||.++++.+
T Consensus 288 ~~--~~el---~~~l~~l~~~~~~---~~~Vi~ISA~tg~GIdeLl~~I 328 (390)
T PRK12298 288 LD--EEEA---EERAKAIVEALGW---EGPVYLISAASGLGVKELCWDL 328 (390)
T ss_pred CC--hHHH---HHHHHHHHHHhCC---CCCEEEEECCCCcCHHHHHHHH
Confidence 73 2222 2233333333332 1257999999999999987754
No 206
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=3.8e-16 Score=168.87 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=104.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+-...|+|||.+|||||||||+|++....+ ...+++|+......+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEECC
Confidence 345789999999999999999998532211 1113445444444555667
Q ss_pred eEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCc-ccccccchhHHHHHHHHHHH---------HhCCC
Q 010046 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGS-FEVGMNTAKGLTREHAQLIR---------SFGVD 406 (519)
Q Consensus 344 ~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~-~e~~~~~l~~~~~e~l~ll~---------~~~~p 406 (519)
..|+||||||... ....++.++..+|++|+|||++... ....+..+..+..++..+.. .+...
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8999999999532 2234566788899999999997521 01122223333444444443 22234
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|||+||+|+... . .+.+.+...+...+ +++|+|||++++||.+++..+
T Consensus 286 P~IVVlNKiDL~da--~---el~e~l~~~l~~~g-----~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 286 PRLVVLNKIDVPDA--R---ELAEFVRPELEARG-----WPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred CEEEEEECccchhh--H---HHHHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 59999999998732 1 12223333343333 478999999999999998754
No 207
>PTZ00416 elongation factor 2; Provisional
Probab=99.66 E-value=3.3e-16 Score=180.29 Aligned_cols=169 Identities=26% Similarity=0.329 Sum_probs=127.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
.+.++|+|+|++++|||||+++|++..+.+.... .| ..+.+|....++.+|+|+......+.+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 81 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AG-----DARFTDTRADEQERGITIKSTGISLYYEH 81 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeecccchhhHhhcceeeccceEEEeec
Confidence 4567999999999999999999998777654431 11 1345788899999999997654444443
Q ss_pred ---------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010046 343 ---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 343 ---------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
++.++|+|||||.+|...+..+++.+|++|+|||+..+ +..++..++..+...++| +|+++|
T Consensus 82 ~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g--------~~~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 82 DLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG--------VCVQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred ccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC--------cCccHHHHHHHHHHcCCC-EEEEEE
Confidence 67899999999999999999999999999999999988 567888888888888877 899999
Q ss_pred ecccc----ccc----chhHHHHHHHHHHHHHhc--------CCCCCCceEEEeccccC
Q 010046 414 KMDAV----QYS----KDRFDSIKVQLGTFLRSC--------GFKDASLTWIPLSALEN 456 (519)
Q Consensus 414 KiDlv----~~~----~e~le~i~e~l~~~l~~~--------g~~~~~i~~IpvSA~tG 456 (519)
|||+. +.+ ...+..+.+++...+..+ .+.+....+...|+..|
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~ 211 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQG 211 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEecccc
Confidence 99987 211 134566666676666532 22333334555666644
No 208
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=5.2e-16 Score=165.54 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=98.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-C
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-N 343 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-~ 343 (519)
-...|+|||.+||||||||++|+.....+. ..+++|.......+... +
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~~ 205 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDDG 205 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeCC
Confidence 345799999999999999999985432110 11233333333333334 6
Q ss_pred eEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 344 ~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
..|+||||||... ....++.++..++++|+|||++.......++.+..+..++..+...+..+|+|||+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 7899999999642 334556778889999999999753111222223233333333322222345999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+... .. .+..+.+.++ .+++++||++++|+.++++.+
T Consensus 286 L~~~-~e-------~l~~l~~~l~-----~~i~~iSA~tgeGI~eL~~~L 322 (424)
T PRK12297 286 LPEA-EE-------NLEEFKEKLG-----PKVFPISALTGQGLDELLYAV 322 (424)
T ss_pred CcCC-HH-------HHHHHHHHhC-----CcEEEEeCCCCCCHHHHHHHH
Confidence 7421 11 1222222333 367999999999999998754
No 209
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.2e-16 Score=150.43 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=114.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.-.+||+++|.+++|||-|+.|+......+ ....+.|+.+......++.+.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~-----------------------------~SksTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----------------------------ESKSTIGVEFATRTVNVDGKT 62 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCc-----------------------------ccccceeEEEEeeceeecCcE
Confidence 345789999999999999999998432221 222346777777777788888
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
.+.+||||+||++|...+..+++.+-++++|+|.+...+ |+.+..|.+++..+... +++ +++|+||+||..-...
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---fenv~rWL~ELRdhad~-niv-imLvGNK~DL~~lraV 137 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---FENVERWLKELRDHADS-NIV-IMLVGNKSDLNHLRAV 137 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHH---HHHHHHHHHHHHhcCCC-CeE-EEEeecchhhhhcccc
Confidence 999999999999999999999999999999999987633 33333333333332221 334 8999999999742111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
-.++.+.+....+ ..|+++||+.+.|+.++|..+
T Consensus 138 ----~te~~k~~Ae~~~-----l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 138 ----PTEDGKAFAEKEG-----LFFLETSALDATNVEKAFERV 171 (222)
T ss_pred ----chhhhHhHHHhcC-----ceEEEecccccccHHHHHHHH
Confidence 1233334443333 578999999999999999654
No 210
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=1.3e-15 Score=146.70 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=74.6
Q ss_pred ecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 339 ~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
++.....+.||||+|+++. ....+++.+|++|+|+|.+... +++.+.. .++..+.......|+|||+||+|+.
T Consensus 61 ~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~---Sf~~~~~--~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 61 VDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPN---SLRNVKT--MWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred eCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChh---HHHHHHH--HHHHHHHHhCCCCCEEEEEEchhcc
Confidence 3455678999999998763 3345788999999999998762 2322221 1222222222233599999999986
Q ss_pred cccch---------------hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 419 QYSKD---------------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e---------------~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... ......++...+.+..+ ++|++|||++|+||.++|+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 134 YADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred ccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHHHHHHH
Confidence 31000 01112344555555555 478999999999999999765
No 211
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2e-16 Score=171.52 Aligned_cols=213 Identities=25% Similarity=0.309 Sum_probs=142.4
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD- 340 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~- 340 (519)
...+.+-++|+||++.|||-|+..|.+...- .....|+|..+...+|.
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVq-------------------------------egeaggitqqIgAt~fp~ 519 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQ-------------------------------EGEAGGITQQIGATYFPA 519 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccc-------------------------------cccccceeeeccccccch
Confidence 4567788999999999999999999754221 11113333332222221
Q ss_pred -----------------CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh
Q 010046 341 -----------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF 403 (519)
Q Consensus 341 -----------------~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~ 403 (519)
..--.+.+||||||+.|.....++...||++|+|||..+| +..++.+.+.+++..
T Consensus 520 ~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~r 591 (1064)
T KOG1144|consen 520 ENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRMR 591 (1064)
T ss_pred HHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHhc
Confidence 2234588999999999999999999999999999999999 789999999999999
Q ss_pred CCCcEEEEEeeccccc-cc---------------chhHHHHHHHHHHH---HHhcCCC------C----CCceEEEeccc
Q 010046 404 GVDQLIVAVNKMDAVQ-YS---------------KDRFDSIKVQLGTF---LRSCGFK------D----ASLTWIPLSAL 454 (519)
Q Consensus 404 ~~ppiIVVvNKiDlv~-~~---------------~e~le~i~e~l~~~---l~~~g~~------~----~~i~~IpvSA~ 454 (519)
+.| |||++||+|.+- |. .....++..++..+ +...|++ + ..+.++|+||.
T Consensus 592 ktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~ 670 (1064)
T KOG1144|consen 592 KTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAI 670 (1064)
T ss_pred CCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccc
Confidence 888 999999999652 21 11122222222222 2222322 1 33678999999
Q ss_pred cCCCccccccccccCccccccccchhhhhhhhhccccCCCeeeecCCceeEEecccceeeecccC
Q 010046 455 ENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSLYLCPYVTFLNHSTGRCLPVANWRLELFEVD 519 (519)
Q Consensus 455 tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~~~~~~~~~~~~~~g~~~p~~~~~~~l~~~~ 519 (519)
+|+||.+|+--+ ..|.+-.. ...+-+......-.+......|.|+.+.|...+=.|-++|
T Consensus 671 sGeGipdLl~ll--v~ltQk~m---~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD 730 (1064)
T KOG1144|consen 671 SGEGIPDLLLLL--VQLTQKTM---VEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGD 730 (1064)
T ss_pred cCCCcHHHHHHH--HHHHHHHH---HHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCC
Confidence 999999986432 23322110 1112233333333344444499999999998888887765
No 212
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.66 E-value=3.2e-16 Score=178.40 Aligned_cols=174 Identities=29% Similarity=0.365 Sum_probs=129.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee---
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 339 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~--- 339 (519)
..+.++|+|+||+++|||||+.+|++..+.+.... .| ..+.+|....++.+|+|+......+
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 81 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMVHE 81 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEEEE
Confidence 34678999999999999999999998877665421 11 1356888899999999987665433
Q ss_pred -cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 340 -DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 340 -~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
...+..++|+|||||.+|...+..+++.+|++|+|||+..+ ...+++.++.++...+.| .|+++||+|+.
T Consensus 82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g--------~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG--------VMPQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC--------CCccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 33578899999999999999999999999999999999987 557788888887777887 68999999986
Q ss_pred ccc--------chhHHHHHHHHHHHHHhcC---------CCCCCceEEEeccccCCCcc
Q 010046 419 QYS--------KDRFDSIKVQLGTFLRSCG---------FKDASLTWIPLSALENQNLV 460 (519)
Q Consensus 419 ~~~--------~e~le~i~e~l~~~l~~~g---------~~~~~i~~IpvSA~tGegI~ 460 (519)
... ..++..+.+++..++..+. +...+-.+++.||+.+.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~ 211 (731)
T PRK07560 153 IKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAIS 211 (731)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeeccccccee
Confidence 321 2233333344444444321 12222346788999887775
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.9e-16 Score=166.94 Aligned_cols=149 Identities=21% Similarity=0.204 Sum_probs=110.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
..-++|+|+|.||||||||+|+|++...+|+... +|+|.++....+...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------------------------------~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------------------------------AGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCC------------------------------CCCccceEEEEEEECC
Confidence 3457899999999999999999998777665544 8999999999999999
Q ss_pred eEEEEEeCCCCCcc--------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 344 YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~~l~LiDTPG~~~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
+.+.|+||+|.++- .......+.+||+++||+|++.+ +......+.. +...+ +|+++|+||+
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~--------~~~~d~~~~~-~~~~~-~~~i~v~NK~ 334 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP--------LDKEDLALIE-LLPKK-KPIIVVLNKA 334 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CchhhHHHHH-hcccC-CCEEEEEech
Confidence 99999999996542 22335567889999999999975 2233444444 22223 3499999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+..... . ..+ +.. ...+++.+||++|+|+..+.+.+
T Consensus 335 DL~~~~~--~----~~~-----~~~---~~~~~i~iSa~t~~Gl~~L~~~i 371 (454)
T COG0486 335 DLVSKIE--L----ESE-----KLA---NGDAIISISAKTGEGLDALREAI 371 (454)
T ss_pred hcccccc--c----chh-----hcc---CCCceEEEEecCccCHHHHHHHH
Confidence 9985321 1 111 111 12367999999999999997765
No 214
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=7.2e-16 Score=148.13 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=90.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC-
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~- 343 (519)
..++|+|+|++|||||||+|+|++...... ...+.|.......+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 88 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAE-------------------------------DQLFATLDPTTRRLRLPDG 88 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccC-------------------------------CccceeccceeEEEEecCC
Confidence 357899999999999999999985321000 001112211122222233
Q ss_pred eEEEEEeCCCCCcc-hh-------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEe
Q 010046 344 YHVVVLDSPGHKDF-VP-------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVN 413 (519)
Q Consensus 344 ~~l~LiDTPG~~~f-~~-------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvN 413 (519)
..++||||||+.+. .. .....+..+|++++|+|++.+... .....+..++...+ .+|+|+|+|
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~-------~~~~~~~~~l~~~~~~~~~viiV~N 161 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE-------EQIETVEKVLKELGAEDIPMILVLN 161 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh-------hHHHHHHHHHHHcCcCCCCEEEEEE
Confidence 38999999997331 11 122335679999999999876211 11222333333332 245999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+... .... ..+. ....+++++||++|.|+.+++..+
T Consensus 162 K~Dl~~~--~~~~-------~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~L 200 (204)
T cd01878 162 KIDLLDD--EELE-------ERLE-----AGRPDAVFISAKTGEGLDELLEAI 200 (204)
T ss_pred ccccCCh--HHHH-------HHhh-----cCCCceEEEEcCCCCCHHHHHHHH
Confidence 9999743 2111 1111 123578999999999999997643
No 215
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.65 E-value=8.9e-16 Score=174.65 Aligned_cols=152 Identities=22% Similarity=0.216 Sum_probs=107.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+++|++|+|||||+|+|++... .....+|+|.+.....+...+
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~-------------------------------~vgn~pGvTve~k~g~~~~~~ 49 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ-------------------------------RVGNWAGVTVERKEGQFSTTD 49 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCceEeeEEEEEEcCc
Confidence 3467899999999999999999985321 111237888877777788888
Q ss_pred eEEEEEeCCCCCcchhh----------hhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEE
Q 010046 344 YHVVVLDSPGHKDFVPN----------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~----------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVV 411 (519)
..+.||||||+.++... ...+ ...+|++|+|+|+++.. ....+...+.+.++| +|+|
T Consensus 50 ~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le----------r~l~l~~ql~e~giP-vIvV 118 (772)
T PRK09554 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE----------RNLYLTLQLLELGIP-CIVA 118 (772)
T ss_pred eEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch----------hhHHHHHHHHHcCCC-EEEE
Confidence 99999999998776431 1112 24699999999998641 122334455667777 9999
Q ss_pred EeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 412 vNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+||+|+.+. ..+....+.+ .+.+| ++++++||++|+|++++.+.+.
T Consensus 119 lNK~Dl~~~--~~i~id~~~L---~~~LG-----~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 119 LNMLDIAEK--QNIRIDIDAL---SARLG-----CPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred EEchhhhhc--cCcHHHHHHH---HHHhC-----CCEEEEEeecCCCHHHHHHHHH
Confidence 999998732 2222222333 33344 4789999999999999887653
No 216
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=2e-15 Score=146.68 Aligned_cols=160 Identities=20% Similarity=0.157 Sum_probs=103.6
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..+..+||+|+|..|||||||+++++.... ......+.+............
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 55 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEF-----------------------------EKKYIPTLGVEVHPLKFYTNC 55 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCccceEEEEEEEEECC
Confidence 345678999999999999999998773211 001112233333333333455
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....+.+|||+|++.|...+..++..++++|+|+|.+...+ +. ....+...+.......|+++|+||+|+...
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~- 128 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIPIVLVGNKVDVKDR- 128 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCEEEEEECccCccc-
Confidence 66789999999999998888888889999999999997632 22 222222222222233458999999998632
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.... ....+.+..+ +.++++||++|.|+.++|..++
T Consensus 129 -~~~~----~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 129 -QVKA----RQITFHRKKN-----LQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred -cCCH----HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHHH
Confidence 1111 1112333333 4789999999999999886543
No 217
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=3.9e-16 Score=168.38 Aligned_cols=144 Identities=22% Similarity=0.204 Sum_probs=98.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|||||||+|+|++....+. ...+|+|.+.....+...+.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIV------------------------------TDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcccccEEEEEEECCe
Confidence 347899999999999999999995332111 11245565555555666778
Q ss_pred EEEEEeCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.||||||++++.. ....++..+|++|+|+|++.+.+. .....+ ......|+|+|+||+|
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~--------~~~~~l---~~~~~~piiiV~NK~D 332 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTE--------EDDEIL---EELKDKPVIVVLNKAD 332 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCh--------hHHHHH---HhcCCCCcEEEEEhhh
Confidence 899999999876432 234567889999999999876221 111111 1132335999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+... .... . ....+++++||++|.|+.++++.+
T Consensus 333 L~~~--~~~~----------~-----~~~~~~i~iSAktg~GI~~L~~~L 365 (449)
T PRK05291 333 LTGE--IDLE----------E-----ENGKPVIRISAKTGEGIDELREAI 365 (449)
T ss_pred cccc--chhh----------h-----ccCCceEEEEeeCCCCHHHHHHHH
Confidence 9742 1111 1 112467999999999999998765
No 218
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.5e-16 Score=172.87 Aligned_cols=149 Identities=34% Similarity=0.442 Sum_probs=125.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.+||+|+||.++|||||..+|+...+.+.+..- ... -+..+|....++.+|+|+..+...+.+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~-------v~~------g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGE-------VHD------GAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCcc-------ccC------CCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 456789999999999999999999998887765210 011 1356899999999999999999999999
Q ss_pred C-eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~-~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
+ +.|+|||||||.+|.....+.++.+|++|+|+|+..| ++.|++..++++...++| .|+++||||....+
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~ 144 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKYGVP-RILFVNKMDRLGAD 144 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhcCCC-eEEEEECccccccC
Confidence 5 9999999999999999999999999999999999998 788999999999999999 69999999998643
Q ss_pred chhHHHHHHHHHHHH
Q 010046 422 KDRFDSIKVQLGTFL 436 (519)
Q Consensus 422 ~e~le~i~e~l~~~l 436 (519)
+....+++...|
T Consensus 145 ---~~~~~~~l~~~l 156 (697)
T COG0480 145 ---FYLVVEQLKERL 156 (697)
T ss_pred ---hhhhHHHHHHHh
Confidence 233344444444
No 219
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.64 E-value=2.6e-16 Score=146.32 Aligned_cols=136 Identities=23% Similarity=0.239 Sum_probs=89.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|++|+|||||+|+|.+.... . ..+... .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--------------------------------~---~~~~~v---~~~~~----~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--------------------------------A---RKTQAV---EFNDK----G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--------------------------------C---ccceEE---EECCC----C
Confidence 6999999999999999998742110 0 011111 11111 2
Q ss_pred EEeCCCC----CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 348 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 348 LiDTPG~----~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
+|||||+ .++...+..++..+|++|+|+|++.+... ...++..+ ..+. |+++++||+|+...
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~--------~~~~~~~~--~~~~-~ii~v~nK~Dl~~~--- 106 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR--------LPAGLLDI--GVSK-RQIAVISKTDMPDA--- 106 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc--------cCHHHHhc--cCCC-CeEEEEEccccCcc---
Confidence 6999996 34555556678899999999999976221 11122221 1234 49999999998632
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. +.+..+++..++. .+++++||++|+||.+++..+
T Consensus 107 ~~----~~~~~~~~~~~~~---~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 107 DV----AATRKLLLETGFE---EPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred cH----HHHHHHHHHcCCC---CCEEEEECCCccCHHHHHHHH
Confidence 11 2344555555542 478999999999999998754
No 220
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=9.1e-16 Score=160.54 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-CCe
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-~~~ 344 (519)
.++|+|+|.+|||||||+|+|++....+ . ...+.|.+.....+.. .+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v-~------------------------------~~~~tT~d~~~~~i~~~~~~ 237 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYA-A------------------------------DQLFATLDPTTRRLDLPDGG 237 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceee-c------------------------------cCCccccCCEEEEEEeCCCc
Confidence 4789999999999999999999542110 0 0122222222222333 356
Q ss_pred EEEEEeCCCC-Ccch-------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEee
Q 010046 345 HVVVLDSPGH-KDFV-------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNK 414 (519)
Q Consensus 345 ~l~LiDTPG~-~~f~-------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNK 414 (519)
.+.||||||+ .... ..+...+..+|++|+|+|++.+.. ......+..++...+ ..|+|+|+||
T Consensus 238 ~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~-------~~~~~~~~~~L~~l~~~~~piIlV~NK 310 (351)
T TIGR03156 238 EVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDR-------EEQIEAVEKVLEELGAEDIPQLLVYNK 310 (351)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCch-------HHHHHHHHHHHHHhccCCCCEEEEEEe
Confidence 8999999997 2211 123345778999999999987621 112222233444432 2459999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+... ..+. ... . + ..++|++||++|.|+.++++.+
T Consensus 311 ~Dl~~~--~~v~-------~~~-~-~----~~~~i~iSAktg~GI~eL~~~I 347 (351)
T TIGR03156 311 IDLLDE--PRIE-------RLE-E-G----YPEAVFVSAKTGEGLDLLLEAI 347 (351)
T ss_pred ecCCCh--HhHH-------HHH-h-C----CCCEEEEEccCCCCHHHHHHHH
Confidence 999732 1111 111 1 1 1257999999999999997644
No 221
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7e-16 Score=157.09 Aligned_cols=241 Identities=22% Similarity=0.284 Sum_probs=174.6
Q ss_pred CCCccccCCCccCCCCCCCcCCcchhhhhhccccccCCCCccccccc-cccccC----CCCcccccCCCCcCCcccceEE
Q 010046 195 NHGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSAR-KTNSHT----QYKPEKWMLPDKKGDRMTQLNL 269 (519)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~s~~v~~~-~~~~~~----~~~~e~~~~~~~~~~~~~~ikI 269 (519)
+.|+-.++++.++.|==++....++.++|..|+.|+........-++ +..... +...|-+.++--+.++.-.++|
T Consensus 91 G~GEAiYeIGVeD~G~l~GL~deemnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRv 170 (591)
T KOG1143|consen 91 GQGEAIYEIGVEDGGILSGLTDEEMNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRV 170 (591)
T ss_pred CCCcEEEEeeeccCceeeccCHHHHHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEE
Confidence 56777999999888888888889999999999999987654422222 322222 2233444455555677789999
Q ss_pred EEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEe-----------
Q 010046 270 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY----------- 338 (519)
Q Consensus 270 vIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~----------- 338 (519)
+++|..++|||||+..|...+- + .|.+. .-..+..+..+...|.|..+....
T Consensus 171 AVlGg~D~GKSTLlGVLTQgeL--D-------------nG~Gr--ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVN 233 (591)
T KOG1143|consen 171 AVLGGCDVGKSTLLGVLTQGEL--D-------------NGNGR--ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVN 233 (591)
T ss_pred EEecCcccCcceeeeeeecccc--c-------------CCCCe--eeeehhcchhhhccCcccccchhcccccccccccc
Confidence 9999999999999999973211 0 01111 111223333333333333222111
Q ss_pred ----------ecCCCeEEEEEeCCCCCcchhhhhhcccc--CCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC
Q 010046 339 ----------FDSKNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 339 ----------~~~~~~~l~LiDTPG~~~f~~~~~~~l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p 406 (519)
.+.....++|||.+||.+|...++.++.. +|++++|+.+..| +...+++|+.++..+++|
T Consensus 234 Y~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--------i~~tTrEHLgl~~AL~iP 305 (591)
T KOG1143|consen 234 YAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--------ITWTTREHLGLIAALNIP 305 (591)
T ss_pred hhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--------CccccHHHHHHHHHhCCC
Confidence 12234568999999999999999998876 8999999999998 567899999999999999
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCC---------------------CCceEEEeccccCCCccccc
Q 010046 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD---------------------ASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~---------------------~~i~~IpvSA~tGegI~el~ 463 (519)
++|+++|||++ +..-++.+.+++..++...|+.. .-+++|.+|..+|+|+.-+.
T Consensus 306 -fFvlvtK~Dl~--~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 306 -FFVLVTKMDLV--DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred -eEEEEEeeccc--cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 99999999999 56667888888999998887643 23578999999999998764
No 222
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=1e-15 Score=173.27 Aligned_cols=134 Identities=32% Similarity=0.490 Sum_probs=107.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|+.|+|||||+++|++..+.+...... ..+ .+.++....++.+++|+......+.+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v---------~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~ 73 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEV---------EDG----TTVTDWMPQEQERGITIESAATSCDWDNH 73 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccc---------cCC----cccCCCCHHHHhcCCCcccceEEEEECCE
Confidence 56899999999999999999999766654332100 001 13456666778899998888888888999
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
.++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +++|+||+|+...
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~ 140 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIP-RLIFINKMDRVGA 140 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCCCCCC
Confidence 999999999999999999999999999999999977 345666777777777777 8999999998753
No 223
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.63 E-value=1.3e-15 Score=141.30 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=89.9
Q ss_pred EEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-CeEEEEE
Q 010046 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (519)
Q Consensus 271 IVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-~~~l~Li 349 (519)
|+|++|||||||+|+|++....+ ...++.|.......+... +..+.||
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-------------------------------ANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc-------------------------------cCCCceeecCcceEEEcCCCCeEEEE
Confidence 58999999999999998532100 011222332222233445 7789999
Q ss_pred eCCCCCc-------chhhhhhccccCCeEEEEeecCCCcc---cccccchhHHHHHHHHHHH------HhCCCcEEEEEe
Q 010046 350 DSPGHKD-------FVPNMISGATQSDAAILVIDASVGSF---EVGMNTAKGLTREHAQLIR------SFGVDQLIVAVN 413 (519)
Q Consensus 350 DTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~---e~~~~~l~~~~~e~l~ll~------~~~~ppiIVVvN 413 (519)
||||+.. +...+...+..+|++++|+|+..... ...+.....+..++..... ..+. |+++|+|
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~N 128 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAK-PVIYVLN 128 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhC-CeEEEEE
Confidence 9999632 22234556788999999999986510 0011111112222221111 1234 4999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+... ....... ..... . .....++++||++|.|+.++++.+
T Consensus 129 K~Dl~~~--~~~~~~~--~~~~~--~---~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 129 KIDLDDA--EELEEEL--VRELA--L---EEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred chhcCch--hHHHHHH--HHHHh--c---CCCCCEEEEehhhhcCHHHHHHHH
Confidence 9999742 2222211 11111 1 123468999999999999998643
No 224
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=2e-15 Score=135.01 Aligned_cols=151 Identities=20% Similarity=0.198 Sum_probs=93.9
Q ss_pred EEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-CeEEEEE
Q 010046 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (519)
Q Consensus 271 IVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-~~~l~Li 349 (519)
|+|++|+|||||+++|++..... .....+.+.......+... ...+.||
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999998542211 0111222322222222222 6789999
Q ss_pred eCCCCCcchh-------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 350 DSPGHKDFVP-------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 350 DTPG~~~f~~-------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
||||+..+.. .+...+..+|++++|+|+.... ......+.......+.| +++|+||+|+...
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~--------~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~-- 119 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA--------DEEEEKLLELLRERGKP-VLLVLNKIDLLPE-- 119 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCe-EEEEEEccccCCh--
Confidence 9999776543 3344678899999999999762 12222234444445555 9999999999842
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.......+ ............+++++||+++.|+.++++.+
T Consensus 120 ~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 120 EEEEELLE----LRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred hhHHHHHH----HHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 22222211 11111112235688999999999999987643
No 225
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.63 E-value=2.8e-16 Score=154.80 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=142.6
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhccccccc--------chhhhhHHHHhhCCCccchhhcccccccccccceEEE
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK--------QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT 333 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~--------~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~ 333 (519)
..++++.|+++|..|+|||||+.||..+......+ .+....-.++++.+.+..|.-+|.+.+..++.||...
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 35667889999999999999999998665543222 2334445677788889999999999999999999876
Q ss_pred EEEEeecC-----------CCeEEEEEeCCCCCcchhhhhhc--------cccCCeEEEEeecCCCcccccccchhHHHH
Q 010046 334 VAVAYFDS-----------KNYHVVVLDSPGHKDFVPNMISG--------ATQSDAAILVIDASVGSFEVGMNTAKGLTR 394 (519)
Q Consensus 334 ~~~~~~~~-----------~~~~l~LiDTPG~~~f~~~~~~~--------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~ 394 (519)
++.+...+ ....++|||||||.+...+..++ ....-+++||+|..+. .....++....
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs---~~p~tFMSNMl 171 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRS---TSPTTFMSNML 171 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcC---CCchhHHHHHH
Confidence 55443221 34679999999976633332222 1337789999999876 34556788888
Q ss_pred HHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcC-----CC--------------CCCceEEEecccc
Q 010046 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG-----FK--------------DASLTWIPLSALE 455 (519)
Q Consensus 395 e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g-----~~--------------~~~i~~IpvSA~t 455 (519)
....++.+..+| +|+|+||+|+.+. +...++...+..+-..+. +- -.++.++-|||.+
T Consensus 172 YAcSilyktklp-~ivvfNK~Dv~d~--~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t 248 (366)
T KOG1532|consen 172 YACSILYKTKLP-FIVVFNKTDVSDS--EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT 248 (366)
T ss_pred HHHHHHHhccCC-eEEEEeccccccc--HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence 999999999998 9999999999852 223333333332222211 00 0346789999999
Q ss_pred CCCcccccccccc
Q 010046 456 NQNLVTAPDDGIR 468 (519)
Q Consensus 456 GegI~el~~~i~~ 468 (519)
|+|..++|.++..
T Consensus 249 G~G~ddf~~av~~ 261 (366)
T KOG1532|consen 249 GEGFDDFFTAVDE 261 (366)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999987543
No 226
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.63 E-value=8.8e-16 Score=157.04 Aligned_cols=241 Identities=24% Similarity=0.369 Sum_probs=178.2
Q ss_pred CCCccccCCCccCCCCCCCcCCcchhhhhhccccccCCCCccccccccccccCCCCcccccCCCCcCCcccceEEEEEcC
Q 010046 195 NHGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGH 274 (519)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~s~~v~~~~~~~~~~~~~e~~~~~~~~~~~~~~ikIvIVG~ 274 (519)
+-|+--+-.+.+++|.-.+...+.|.++++.|+..+...+..-..++...-...+..+-.+. .+...-...+.|++.|+
T Consensus 47 GdGeA~YviGVsd~Ge~~Gl~~~~l~esievL~~la~evgA~i~~v~~~eg~~g~Vaev~vr-r~~~~~~~hv~Vg~aGh 125 (527)
T COG5258 47 GDGEAVYVIGVSDDGEPLGLSDEKLVESIEVLRELAREVGASIYIVRVHEGTDGYVAEVLVR-RKTEEAPEHVLVGVAGH 125 (527)
T ss_pred CCceEEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHhCCEEEEEEEEeccCcEEEEEEEE-ecccCCCceEEEEEecc
Confidence 34555677778888888888999999999999998887766644454444445555554443 44445667899999999
Q ss_pred CCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--------------
Q 010046 275 VDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-------------- 340 (519)
Q Consensus 275 ~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-------------- 340 (519)
+++|||||+..|.- +.. .+++-..-.+.+....+..+|.+.++.+..+-
T Consensus 126 VdhGKSTlvG~Lvt--G~~---------------DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 126 VDHGKSTLVGVLVT--GRL---------------DDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred ccCCcceEEEEEEe--cCC---------------CCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 99999999999972 111 01111122334555555666666544433221
Q ss_pred ---------CCCeEEEEEeCCCCCcchhhhhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE
Q 010046 341 ---------SKNYHVVVLDSPGHKDFVPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (519)
Q Consensus 341 ---------~~~~~l~LiDTPG~~~f~~~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI 409 (519)
..+.-+.|+||.||+.+...+++++ .+.|..+||+.|..| .+..+++|+.++..+..| +|
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--------~~~~tkEHLgi~~a~~lP-vi 259 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--------VTKMTKEHLGIALAMELP-VI 259 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--------cchhhhHhhhhhhhhcCC-EE
Confidence 1235578999999999999999987 459999999999998 678999999999999999 99
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhcCCC--------------------CCCceEEEeccccCCCcccccc
Q 010046 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK--------------------DASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~--------------------~~~i~~IpvSA~tGegI~el~~ 464 (519)
+|++|+|+. +.++++.+.+++...|+..+-- ..-+|+|.+|+.+|+|++-|.+
T Consensus 260 VvvTK~D~~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 260 VVVTKIDMV--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred EEEEecccC--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 999999999 6788888999999888875411 1135889999999999987643
No 227
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.62 E-value=4.3e-15 Score=141.19 Aligned_cols=159 Identities=15% Similarity=0.109 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||+|+|..|+|||||+++|...... . ......+... .....+......+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~---------------------------~~~~t~~~~~-~~~~~~~~~~~~l 51 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--E---------------------------EYHPTVFENY-VTDCRVDGKPVQL 51 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--c---------------------------ccCCcccceE-EEEEEECCEEEEE
Confidence 47999999999999999999732110 0 0000000000 1111233334578
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhCCCcEEEEEeecccccccc---
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSK--- 422 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~~ppiIVVvNKiDlv~~~~--- 422 (519)
.+|||||++.+.......+..++++|+|+|..... . +......++..+. .....|+|||+||+|+.....
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s---~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~ 125 (187)
T cd04129 52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---S---LENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKE 125 (187)
T ss_pred EEEECCCChhccccchhhcCCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccc
Confidence 89999999888766556778899999999998652 2 2222222222222 222345999999999864211
Q ss_pred ----hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 ----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 ----e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++. ..+....+.+.++. .++|++||++|.||.++|+.+
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~f~~l 168 (187)
T cd04129 126 EYRTQRFV-PIQQGKRVAKEIGA----KKYMECSALTGEGVDDVFEAA 168 (187)
T ss_pred ccccCCcC-CHHHHHHHHHHhCC----cEEEEccCCCCCCHHHHHHHH
Confidence 1111 11233344444442 368999999999999998743
No 228
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=2.6e-15 Score=161.49 Aligned_cols=146 Identities=25% Similarity=0.216 Sum_probs=99.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|||||||+|+|++....+. ...+|+|.+.....+...+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv------------------------------s~~pgtTrd~~~~~i~~~g~ 251 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIV------------------------------SDIKGTTRDVVEGDFELNGI 251 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCcEEEEEEEEEEECCE
Confidence 457899999999999999999995322111 12356677666666777788
Q ss_pred EEEEEeCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.||||||+.++.. ....++..+|++|+|+|++.+.+ + ... ++..+...+.| +|+|+||+|
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s---~-----~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT---K-----DDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC---h-----hHH-HHHHHhhCCCC-EEEEEECcc
Confidence 999999999866442 23457788999999999987622 1 111 22333334555 999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+... .. + .+.+.++ .+++++||++ .||.++++.+
T Consensus 322 l~~~---~~----~---~~~~~~~-----~~~~~vSak~-~gI~~~~~~L 355 (442)
T TIGR00450 322 LKIN---SL----E---FFVSSKV-----LNSSNLSAKQ-LKIKALVDLL 355 (442)
T ss_pred CCCc---ch----h---hhhhhcC-----CceEEEEEec-CCHHHHHHHH
Confidence 8632 11 1 1122222 3679999998 5888887643
No 229
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.3e-15 Score=152.05 Aligned_cols=166 Identities=30% Similarity=0.460 Sum_probs=133.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-----
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 340 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~----- 340 (519)
.++|+|+||.++|||||.++|... .-+...|......++|+|.+.....+.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~------------------------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL------------------------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh------------------------ccchhhccCCcccccceeEeecceeeeccccc
Confidence 489999999999999999999721 112235666677789999887655442
Q ss_pred ----CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 341 ----SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 341 ----~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+..+++|+|+|||....+.++.+....|..++|||+..| .+.++.+++-+...+-.+ .|||+||+|
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG--------~QtQtAEcLiig~~~c~k-lvvvinkid 133 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG--------KQTQTAECLIIGELLCKK-LVVVINKID 133 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc--------cccccchhhhhhhhhccc-eEEEEeccc
Confidence 2456789999999999999999999999999999999988 567888888776666555 899999999
Q ss_pred ccccc--chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccC----CCccccccc
Q 010046 417 AVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN----QNLVTAPDD 465 (519)
Q Consensus 417 lv~~~--~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG----egI~el~~~ 465 (519)
..... ...++....++++-|+..++.. +.+++++||+.| ++|.++.+.
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g-~~PI~~vsa~~G~~~~~~i~eL~e~ 187 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFDG-NSPIVEVSAADGYFKEEMIQELKEA 187 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcCC-CCceeEEecCCCccchhHHHHHHHH
Confidence 88643 3457788888999999999864 579999999999 777776543
No 230
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=5.4e-15 Score=141.09 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=108.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..+-|+++|++|||||||||+|++..... ....++|.|..++++.+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------------rtSktPGrTq~iNff~~~~~-- 71 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------------RTSKTPGRTQLINFFEVDDE-- 71 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCccee-----------------------------ecCCCCCccceeEEEEecCc--
Confidence 34569999999999999999999643211 22345888888887776653
Q ss_pred EEEEEeCCCC----------Ccchhhhhhcc---ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEE
Q 010046 345 HVVVLDSPGH----------KDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (519)
Q Consensus 345 ~l~LiDTPG~----------~~f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVV 411 (519)
+.|+|.||. +.+...+..|+ ....++++|||+.++ ......+.++++...++| ++||
T Consensus 72 -~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~--------~~~~D~em~~~l~~~~i~-~~vv 141 (200)
T COG0218 72 -LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP--------PKDLDREMIEFLLELGIP-VIVV 141 (200)
T ss_pred -EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-eEEE
Confidence 889999992 22333333343 337789999999998 556788999999999998 8999
Q ss_pred EeecccccccchhHHHHHHHHHHHHHhcCCCCC-CceEEEeccccCCCcccccccc
Q 010046 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 412 vNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~-~i~~IpvSA~tGegI~el~~~i 466 (519)
+||+|++.. .........+.. .+.+... ...++..|+.++.|++++...+
T Consensus 142 ~tK~DKi~~--~~~~k~l~~v~~---~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i 192 (200)
T COG0218 142 LTKADKLKK--SERNKQLNKVAE---ELKKPPPDDQWVVLFSSLKKKGIDELKAKI 192 (200)
T ss_pred EEccccCCh--hHHHHHHHHHHH---HhcCCCCccceEEEEecccccCHHHHHHHH
Confidence 999999953 222222233332 2222221 1127889999999999886543
No 231
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.60 E-value=1.5e-14 Score=131.85 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=96.4
Q ss_pred EEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEE
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~L 348 (519)
|+|+|.+|||||||++.|++..... ......+.+......... ..+++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~---~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGKTQLINFFNVN---DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-----------------------------eecCCCCcceeEEEEEcc---CeEEE
Confidence 8999999999999999998321100 001112333333222222 28999
Q ss_pred EeCCCCCc----------chhhhhhcc---ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 349 LDSPGHKD----------FVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 349 iDTPG~~~----------f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
|||||+.. +...+..++ ..++++++|+|.... ......++...+...+.| +++|+||+
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 99999644 222222222 346789999999865 223445566666666666 99999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+. ...........+...++... ...+++++||+++.|+.++++.+
T Consensus 121 D~~--~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 121 DKL--KKSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDELRALI 166 (170)
T ss_pred hcC--ChHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHHHHHHH
Confidence 997 33344444555555554211 23578999999999999987643
No 232
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2e-15 Score=136.89 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=108.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+|++|+|..|.|||.|+.+|+.... ......+.|+.+......+..+..+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf-----------------------------kDdssHTiGveFgSrIinVGgK~vK 59 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF-----------------------------KDDSSHTIGVEFGSRIVNVGGKTVK 59 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh-----------------------------cccccceeeeeecceeeeecCcEEE
Confidence 36899999999999999999983211 1123334566665555666778889
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCc--EEEEEeecccccccch
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYSKD 423 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~pp--iIVVvNKiDlv~~~~e 423 (519)
++||||+||++|.....+|++.+..+++|+|++... + +...+.|+- -++.+..|. +|++.||-||....+.
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrd---s---fnaLtnWL~-DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRD---S---FNALTNWLT-DARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchh---h---HHHHHHHHH-HHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 999999999999999999999999999999999762 2 333444332 223333332 6778899998743222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
. ..+...+..+ ..+.+.++||++|+|++|.|-
T Consensus 133 t----flEAs~FaqE-----nel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 133 T----FLEASRFAQE-----NELMFLETSALTGENVEEAFL 164 (214)
T ss_pred h----HHHHHhhhcc-----cceeeeeecccccccHHHHHH
Confidence 2 2233344333 235779999999999999874
No 233
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.5e-15 Score=155.12 Aligned_cols=138 Identities=32% Similarity=0.424 Sum_probs=114.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+.+||-||+||||||...|+...++|......+. +.+- .....|=...++.+||++......|++.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~--------rk~~-~~a~SDWM~iEkqRGISVtsSVMqF~Y~~ 80 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKG--------RKSG-KHAKSDWMEIEKQRGISVTSSVMQFDYAD 80 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeee--------ccCC-cccccHHHHHHHhcCceEEeeEEEeccCC
Confidence 45678999999999999999999977666644322111 1110 01223445678889999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
..++|+|||||++|...+.+.+..+|.+|+|||+..| +..++..+...++..+.| ||-++||+|...
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG--------iE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~ 147 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------IEPQTLKLFEVCRLRDIP-IFTFINKLDREG 147 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccC--------ccHHHHHHHHHHhhcCCc-eEEEeecccccc
Confidence 9999999999999999999999999999999999988 789999999999999998 999999999874
No 234
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.58 E-value=7.1e-15 Score=134.95 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=106.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
+.++++|.|+|.-||||||++++|++.... ...++.|. ....+..+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~------------------------------~i~pt~gf----~Iktl~~~ 58 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTD------------------------------TISPTLGF----QIKTLEYK 58 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCcc------------------------------ccCCccce----eeEEEEec
Confidence 345899999999999999999999954321 11112222 22335567
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
.+.+++||..||..+.+.+..|+..+|++|||||.+... .++.......+++.--+..+.| ++|+.||.|+.++
T Consensus 59 ~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~-- 132 (185)
T KOG0073|consen 59 GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---RMQECKQELTELLVEERLAGAP-LLVLANKQDLPGA-- 132 (185)
T ss_pred ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---HHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc--
Confidence 899999999999999999999999999999999998652 1222222222333222233445 8999999999743
Q ss_pred hhHHHHH--HHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010046 423 DRFDSIK--VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 423 e~le~i~--e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
-..+.+. -.+..++ +..+++++-|||.+|+++.+-+
T Consensus 133 l~~~~i~~~~~L~~l~-----ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 133 LSLEEISKALDLEELA-----KSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred cCHHHHHHhhCHHHhc-----cccCceEEEEeccccccHHHHH
Confidence 1222222 2233333 3345688999999999998864
No 235
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=3.3e-15 Score=134.90 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=114.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
..+.+|+|.+|+|||+|+-+|.... .......+.|+.+.+....++....+
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddt-----------------------------Fs~sYitTiGvDfkirTv~i~G~~Vk 58 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDT-----------------------------FSGSYITTIGVDFKIRTVDINGDRVK 58 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcc-----------------------------cccceEEEeeeeEEEEEeecCCcEEE
Confidence 3567899999999999999987221 11112223455555666667777889
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhH
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~l 425 (519)
+.||||+|+++|...+..+++..+++|+|+|+++++ +|.+...+..++...+. .+| -|+|+||.|+....
T Consensus 59 LqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF~Nv~rWLeei~~ncd--sv~-~vLVGNK~d~~~Rr---- 128 (198)
T KOG0079|consen 59 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFNNVKRWLEEIRNNCD--SVP-KVLVGNKNDDPERR---- 128 (198)
T ss_pred EEEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hhHhHHHHHHHHHhcCc--ccc-ceecccCCCCccce----
Confidence 999999999999999999999999999999999984 44444444444443333 234 68999999986421
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 426 e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
-...+..+.+....|+ .+|++||+..+|++.+|.-+.
T Consensus 129 vV~t~dAr~~A~~mgi-----e~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 129 VVDTEDARAFALQMGI-----ELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred eeehHHHHHHHHhcCc-----hheehhhhhcccchHHHHHHH
Confidence 1223455566655554 679999999999999998653
No 236
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.58 E-value=1.1e-14 Score=128.34 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=93.3
Q ss_pred EEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEe
Q 010046 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (519)
Q Consensus 271 IVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiD 350 (519)
|+|++|+|||||+++|.+....... ... ..................+.|||
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~----------------------------~~~-t~~~~~~~~~~~~~~~~~~~l~D 51 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE----------------------------YET-TIIDFYSKTIEVDGKKVKLQIWD 51 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc----------------------------ccc-chhheeeEEEEECCEEEEEEEEe
Confidence 5899999999999999854321000 000 00111112222223457899999
Q ss_pred CCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHH---HHHHHHHhCCCcEEEEEeecccccccchhHHH
Q 010046 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE---HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (519)
Q Consensus 351 TPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e---~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~ 427 (519)
+||+..+.......+..+|++|+|+|+..+.. ....... ........+. |+++|+||+|+..........
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~ivv~nk~D~~~~~~~~~~~ 124 (157)
T cd00882 52 TAGQERFRSLRRLYYRGADGIILVYDVTDRES------FENVKEWLLLILINKEGENI-PIILVGNKIDLPEERVVSEEE 124 (157)
T ss_pred cCChHHHHhHHHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHHhhccCCC-cEEEEEeccccccccchHHHH
Confidence 99998888877888899999999999997621 1111111 2222233344 499999999987532221111
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 428 i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
....... ...++++++||.++.|+.++++.
T Consensus 125 ----~~~~~~~----~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 125 ----LAEQLAK----ELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred ----HHHHHHh----hcCCcEEEEecCCCCChHHHHHH
Confidence 0111111 12468899999999999998764
No 237
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.58 E-value=2.3e-14 Score=138.97 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-----C
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-----S 341 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-----~ 341 (519)
+||+++|..++|||||+++|++.... ....++.|.........+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~-----------------------------~~~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVL-----------------------------GRPSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCcceeeeEEEEEEEEcCCCCCC
Confidence 47999999999999999999842110 0111222333333323332 2
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH------------------Hh
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR------------------SF 403 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~------------------~~ 403 (519)
....+.||||+|+++|...+..+++.+|++|+|+|.+... +++.+..+..++..... ..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~---Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK---SSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGN 128 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH---HHHHHHHHHHHHHHhhccccccccccccccccccCCC
Confidence 4567899999999999999899999999999999999873 34434344444433210 01
Q ss_pred CCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccc
Q 010046 404 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 404 ~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el 462 (519)
++ |+|||+||+|+........+........+.+++|. +.+.+++..+.-+..-
T Consensus 129 ~~-PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~~ 181 (202)
T cd04102 129 QI-PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAAG 181 (202)
T ss_pred Cc-eEEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccCC
Confidence 23 59999999999743222222233334445555665 3477777766555554
No 238
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.58 E-value=3.8e-15 Score=136.08 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||+|||.+|+|||||+++|.+.... ...|..+. + .=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----------------------------------~~KTq~i~-----~---~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----------------------------------YKKTQAIE-----Y---YD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----------------------------------cCccceeE-----e---cc
Confidence 47999999999999999999853221 11111111 1 11
Q ss_pred EEEeCCC----CCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 347 ~LiDTPG----~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
.+||||| +..|...++.....||++++|.|++... ...-..++..++.| +|-|+||+|+... .
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~-----------~~~pP~fa~~f~~p-vIGVITK~Dl~~~-~ 105 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR-----------SVFPPGFASMFNKP-VIGVITKIDLPSD-D 105 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC-----------ccCCchhhcccCCC-EEEEEECccCccc-h
Confidence 4599999 5667777788888999999999999762 11222344445555 9999999999832 2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
. -.+..+++|+..|+.. +|++|+.+|+||.+|.+
T Consensus 106 ~----~i~~a~~~L~~aG~~~----if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 106 A----NIERAKKWLKNAGVKE----IFEVSAVTGEGIEELKD 139 (143)
T ss_pred h----hHHHHHHHHHHcCCCC----eEEEECCCCcCHHHHHH
Confidence 2 2456667788889864 39999999999999865
No 239
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.7e-15 Score=133.80 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.|+.|+|...+|||+|+.+.++....+ ..-++-|+.+.+...+-..+..++
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~-----------------------------afvsTvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTS-----------------------------AFVSTVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccccc-----------------------------ceeeeeeeeEEEeEeeecccEEEE
Confidence 489999999999999999998432111 112234555555544444566899
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
++|||+|++++...+..++++++++||++|.++.+ ++..++.+...+.-+ ...+.+ +|+|.||+|+-.. ..
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNee---Sf~svqdw~tqIkty-sw~naq-vilvgnKCDmd~e--Rv-- 143 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNSVQDWITQIKTY-SWDNAQ-VILVGNKCDMDSE--RV-- 143 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHH---HHHHHHHHHHHheee-eccCce-EEEEecccCCccc--ee--
Confidence 99999999999999999999999999999999763 333333333222211 223444 9999999998732 11
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...++.+.+...+|+ .||++||+.+.|+.++|+++
T Consensus 144 is~e~g~~l~~~LGf-----efFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 144 ISHERGRQLADQLGF-----EFFETSAKENINVKQVFERL 178 (193)
T ss_pred eeHHHHHHHHHHhCh-----HHhhhcccccccHHHHHHHH
Confidence 124556667777786 67999999999999999754
No 240
>PRK12740 elongation factor G; Reviewed
Probab=99.57 E-value=6.4e-15 Score=166.38 Aligned_cols=126 Identities=33% Similarity=0.458 Sum_probs=104.1
Q ss_pred EcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEeC
Q 010046 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (519)
Q Consensus 272 VG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiDT 351 (519)
+|++|+|||||+++|++..+.+...... . . -.+.+|....++.+|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~--------~-~----~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEV--------E-D----GTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccc--------c-C----CcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 6999999999999999887766443100 0 0 1256788888999999999988889999999999999
Q ss_pred CCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 352 PG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
|||.+|...+..++..+|++|+|+|++.+ ...++..++..+...++| +|+|+||+|+..
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~ 126 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVP-RIIFVNKMDRAG 126 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 99999999999999999999999999976 345666677777777777 899999999874
No 241
>PRK11058 GTPase HflX; Provisional
Probab=99.57 E-value=6.8e-15 Score=157.55 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC-eE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 345 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-~~ 345 (519)
++|+|+|.+|||||||+|+|++....+.. ..+.|.+.....+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~-------------------------------~~~tTld~~~~~i~l~~~~~ 246 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD-------------------------------QLFATLDPTLRRIDVADVGE 246 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc-------------------------------CCCCCcCCceEEEEeCCCCe
Confidence 57999999999999999999854321100 12223322222233333 37
Q ss_pred EEEEeCCCCCcc--------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 346 VVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 346 l~LiDTPG~~~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
++||||||+.+. ...+...+..+|++|+|+|++.+.+.... ......+..+...+. |+|+|+||+|+
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l----~~v~~iL~el~~~~~-pvIiV~NKiDL 321 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI----EAVNTVLEEIDAHEI-PTLLVMNKIDM 321 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH----HHHHHHHHHhccCCC-CEEEEEEcccC
Confidence 899999997432 12234557889999999999976321111 011222222222234 49999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
....... +.. ...++ ..++++||++|+||.++++.+.
T Consensus 322 ~~~~~~~-------~~~--~~~~~----~~~v~ISAktG~GIdeL~e~I~ 358 (426)
T PRK11058 322 LDDFEPR-------IDR--DEENK----PIRVWLSAQTGAGIPLLFQALT 358 (426)
T ss_pred CCchhHH-------HHH--HhcCC----CceEEEeCCCCCCHHHHHHHHH
Confidence 7321111 110 11122 1248999999999999987653
No 242
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.55 E-value=8.5e-15 Score=166.47 Aligned_cols=132 Identities=32% Similarity=0.450 Sum_probs=105.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEE----ee
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA----YF 339 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~----~~ 339 (519)
.+.+||+|+|+.++|||||+++|++..+.+.... .+. ...++....++.+|+|+..... .+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AGQ-----QLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CCc-----eeecCCCHHHHhhcchhhcccceeEEee
Confidence 4568999999999999999999998776654421 111 2346667777888888865433 36
Q ss_pred cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 340 ~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
++.++.++|||||||.+|...+..++..+|++|+|+|+..+ +..++..++..+...+.| +|+|+||+|...
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 152 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVK-PVLFINKVDRLI 152 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCC-EEEEEEChhccc
Confidence 77889999999999999999999999999999999999977 456677777777777777 689999999864
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=4e-14 Score=132.70 Aligned_cols=165 Identities=21% Similarity=0.194 Sum_probs=116.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.+...+|+|+|..++||||++.++......++..... .. .....+.+|....+..+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~--------------------~~-s~k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS--------------------SV-SGKGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeecccc--------------------cc-ccccccceeEeecccceEEc
Confidence 5667899999999999999999998543221111000 00 00001224555555555554
Q ss_pred C-eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~-~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
+ ..+.|++||||++|.-++.-..+.+..+|++||.+.+.. ....+++.++......|++|++||.|+....
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~--------~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT--------FHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc--------hHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 4 899999999999999999999999999999999998732 2567788888887745699999999998542
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
. .+.+++.+..-+ ..+++|+++|..++++.+....
T Consensus 138 p--pe~i~e~l~~~~-------~~~~vi~~~a~e~~~~~~~L~~ 172 (187)
T COG2229 138 P--PEKIREALKLEL-------LSVPVIEIDATEGEGARDQLDV 172 (187)
T ss_pred C--HHHHHHHHHhcc-------CCCceeeeecccchhHHHHHHH
Confidence 2 233443333322 2468899999999999997653
No 244
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-14 Score=145.33 Aligned_cols=185 Identities=19% Similarity=0.282 Sum_probs=116.4
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
.+..+.++|+|||.||||||||.|.+++....+..+.+ .+|.......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~------------------------------~TTr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKV------------------------------HTTRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccc------------------------------cceeeeeeEEEe
Confidence 45678899999999999999999999987665555442 234444455566
Q ss_pred CCCeEEEEEeCCCC------Cc------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcE
Q 010046 341 SKNYHVVVLDSPGH------KD------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (519)
Q Consensus 341 ~~~~~l~LiDTPG~------~~------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppi 408 (519)
....+++|+||||. .. +......++..||++++|+|++... ......++..++....-|-
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr--------~~l~p~vl~~l~~ys~ips 188 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR--------TPLHPRVLHMLEEYSKIPS 188 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc--------CccChHHHHHHHHHhcCCc
Confidence 78899999999992 11 2334455677799999999999531 1233334444444443347
Q ss_pred EEEEeecccccccch-----------hHHHHHHHHHHHHHh----------cCCCCCCceEEEeccccCCCcccccc---
Q 010046 409 IVAVNKMDAVQYSKD-----------RFDSIKVQLGTFLRS----------CGFKDASLTWIPLSALENQNLVTAPD--- 464 (519)
Q Consensus 409 IVVvNKiDlv~~~~e-----------~le~i~e~l~~~l~~----------~g~~~~~i~~IpvSA~tGegI~el~~--- 464 (519)
|+|+||+|.+..... .+...+-++.+.... +|+.. .-.+|++||++|+||.++.+
T Consensus 189 ~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwsh-fe~vF~vSaL~G~GikdlkqyLm 267 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSH-FERVFMVSALYGEGIKDLKQYLM 267 (379)
T ss_pred eeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCccc-ceeEEEEecccccCHHHHHHHHH
Confidence 999999998742110 011111111111111 11111 12479999999999999754
Q ss_pred -ccccCccccccccchhhhhh
Q 010046 465 -DGIRGPVYWMQLIPYGLLLE 484 (519)
Q Consensus 465 -~i~~~~w~~~~~~~~~~lle 484 (519)
.+..-.|+....+.+..-.+
T Consensus 268 sqa~~gpW~y~a~i~T~~s~e 288 (379)
T KOG1423|consen 268 SQAPPGPWKYPADIVTEESPE 288 (379)
T ss_pred hcCCCCCCCCCcccccccCHH
Confidence 34456788876665444333
No 245
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.9e-14 Score=157.53 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=112.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+++|+||+|||||+|+|+|....+ ++ -+|+|.+.....+...+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~V-----------------gN--------------wpGvTVEkkeg~~~~~~~ 50 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKV-----------------GN--------------WPGVTVEKKEGKLKYKGH 50 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCcee-----------------cC--------------CCCeeEEEEEEEEEecCc
Confidence 45679999999999999999999654322 22 289999999999999999
Q ss_pred EEEEEeCCCCCcchhh------hhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 345 HVVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~------~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.++|+||.-.+... ...++ ..+|++|-|+|+++- .....+.-++.+++.| +|+++|++|
T Consensus 51 ~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL----------eRnLyltlQLlE~g~p-~ilaLNm~D 119 (653)
T COG0370 51 EIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL----------ERNLYLTLQLLELGIP-MILALNMID 119 (653)
T ss_pred eEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH----------HHHHHHHHHHHHcCCC-eEEEeccHh
Confidence 9999999994332221 11222 348999999999963 3445555666778888 999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.... ..++.-.+++.+.| | ++++|+||++|+|++++...+
T Consensus 120 ~A~~--~Gi~ID~~~L~~~L---G-----vPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 120 EAKK--RGIRIDIEKLSKLL---G-----VPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred hHHh--cCCcccHHHHHHHh---C-----CCEEEEEeecCCCHHHHHHHH
Confidence 8743 22222344555554 4 689999999999999988765
No 246
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.9e-14 Score=134.88 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=116.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++..+|+++|.-+|||||++.+|--.... +.-.|+......+.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v----------------------------------ttvPTiGfnVE~v~yk 59 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV----------------------------------TTVPTIGFNVETVEYK 59 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcc----------------------------------cCCCccccceeEEEEc
Confidence 456788999999999999999998621110 1122334445556667
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~ 420 (519)
+..|++||..||..++..+..|+...+++|||||++.. +.+.....++..++... +..|++++.||.|+.++
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr------~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDR------ERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcH------HHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 99999999999999999999999999999999999965 33455555665555443 34459999999999864
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
-. ..++...|....+....+.+-.++|.+|+|+.+.++
T Consensus 134 ls------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~ 171 (181)
T KOG0070|consen 134 LS------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLD 171 (181)
T ss_pred CC------HHHHHhHhhhhccCCCCcEEeeccccccccHHHHHH
Confidence 11 344555566666667778899999999999999754
No 247
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.54 E-value=2.1e-14 Score=159.67 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=97.6
Q ss_pred cCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEeCC
Q 010046 273 GHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSP 352 (519)
Q Consensus 273 G~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiDTP 352 (519)
|.+|+|||||+|+|.+... .....+|+|.+.....+..++..+.+||||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8999999999999985321 111236777777666666677889999999
Q ss_pred CCCcchhh------hhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 353 GHKDFVPN------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 353 G~~~f~~~------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
|+.++... ...+ ...+|++++|+|+++. .. ..+....+...+.| +|+|+||+|+.....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er-~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~-- 116 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ER-NLYLTLQLLELGIP-MILALNLVDEAEKKG-- 116 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hh-hHHHHHHHHhcCCC-EEEEEehhHHHHhCC--
Confidence 98876543 1222 2469999999999863 11 12223334445666 999999999874221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
... ..+.+.+.+| ++++++||++|+|++++++.+..
T Consensus 117 i~~---d~~~L~~~lg-----~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 117 IRI---DEEKLEERLG-----VPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred Chh---hHHHHHHHcC-----CCEEEEECCCCCCHHHHHHHHHH
Confidence 111 1223333334 47899999999999999987643
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=145.06 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=107.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+....|++||.||||||||+|+|......+ +.|+|++. .+.-|+ +.+.+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkV-----------------a~YaFTTL------~P~iG~--------v~ydd 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKV-----------------AHYAFTTL------RPHIGT--------VNYDD 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcc-----------------cccceeee------ccccce--------eeccc
Confidence 445679999999999999999998544322 22222221 122221 22222
Q ss_pred e-EEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 344 Y-HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~-~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
. ++++.|.||... ....+++++..++.++||||.+.+.....++.++....|+..+-..+..+|.+||+||+
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 2 399999999432 55667889999999999999997743344455556666666666667777799999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+....... +.++.+.++ +..+||+||++|+|+.++...+
T Consensus 323 D~~eae~~~-------l~~L~~~lq----~~~V~pvsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 323 DLPEAEKNL-------LSSLAKRLQ----NPHVVPVSAKSGEGLEELLNGL 362 (366)
T ss_pred CchhHHHHH-------HHHHHHHcC----CCcEEEeeeccccchHHHHHHH
Confidence 986332221 233333332 2257999999999999986543
No 249
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.54 E-value=7.1e-14 Score=134.53 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
+++|+|+|.+|+|||||+|+|++.......... .. ...++........ .....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~--------------------~~------~~~~t~~~~~~~~-~~~~~ 53 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAP--------------------TG------VVETTMKRTPYPH-PKFPN 53 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccc--------------------cC------ccccccCceeeec-CCCCC
Confidence 468999999999999999999853211000000 00 0001111111111 11346
Q ss_pred EEEEeCCCCCcchhhh-----hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 346 VVVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~-----~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
+.+|||||........ ...+..+|++++|.+.. +......++..+...+.+ +++|+||+|+...
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~ 122 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLS 122 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCCC-EEEEEecccchhh
Confidence 8999999975432111 12356789988886543 334556666677777665 9999999998632
Q ss_pred cc-----------hhHHHHHHHHHHHHHhcCCCCCCceEEEeccc--cCCCccccccc
Q 010046 421 SK-----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL--ENQNLVTAPDD 465 (519)
Q Consensus 421 ~~-----------e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~--tGegI~el~~~ 465 (519)
.. ..++++++.+...++..+... ..+|.+|+. .+.|+..+.+.
T Consensus 123 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~--p~v~~vS~~~~~~~~~~~l~~~ 178 (197)
T cd04104 123 NEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE--PPVFLVSNFDPSDYDFPKLRET 178 (197)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHcCCCC--CCEEEEeCCChhhcChHHHHHH
Confidence 11 235566666666666655543 478999999 57777776553
No 250
>PRK09866 hypothetical protein; Provisional
Probab=99.53 E-value=5.3e-14 Score=153.65 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=81.9
Q ss_pred CeEEEEEeCCCCCc-----chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC-CcEEEEEeecc
Q 010046 343 NYHVVVLDSPGHKD-----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMD 416 (519)
Q Consensus 343 ~~~l~LiDTPG~~~-----f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~-ppiIVVvNKiD 416 (519)
..+++|+||||... +...+...+..+|+++||+|+..+ .......++..+...+. .|+|+|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~--------~s~~DeeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL--------KSISDEEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC--------CChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 46899999999432 344567789999999999999875 23445666777776664 24999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+......+.+++.+...+...++. ...+|||||++|.|+..+.+.+
T Consensus 301 l~dreeddkE~Lle~V~~~L~q~~i~--f~eIfPVSAlkG~nid~LLdeI 348 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTLMKGCIT--PQQIFPVSSMWGYLANRARHEL 348 (741)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCCC--CceEEEEeCCCCCCHHHHHHHH
Confidence 87433333455556655555444442 3467999999999999998765
No 251
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.53 E-value=2.4e-14 Score=131.38 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh-cccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEe-ecCCC
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFL-LGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY-FDSKN 343 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~-~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~-~~~~~ 343 (519)
..++++||.+-+|||+|++.+... ...+..++ -|+.+-..... -....
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdpt------------------------------vgvdffarlie~~pg~r 57 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT------------------------------VGVDFFARLIELRPGYR 57 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCc------------------------------cchHHHHHHHhcCCCcE
Confidence 468999999999999999999821 11121111 11111000000 11234
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
.+++||||+||++|...+.+|++..-.+++|+|.++. .+|+.+..+.++....+..-..+-+.+|+.|.||... .
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr---~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--R 132 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR---ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--R 132 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch---hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--c
Confidence 6899999999999999999999999999999999987 4555555555555444431112226789999999832 2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+...++.+.+.+.+|+ .||++||++|.|+++.|.-+
T Consensus 133 --qVt~EEaEklAa~hgM-----~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 133 --QVTAEEAEKLAASHGM-----AFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred --cccHHHHHHHHHhcCc-----eEEEecccCCCcHHHHHHHH
Confidence 2335666677777774 88999999999999998743
No 252
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.51 E-value=1.3e-13 Score=136.53 Aligned_cols=82 Identities=27% Similarity=0.315 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|+|||||+++|.+....+. ..++.|.......+...+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~-------------------------------~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA-------------------------------AYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-------------------------------CCCCccccceEEEEEECCeEEE
Confidence 699999999999999999995421100 0112222222223344678899
Q ss_pred EEeCCCCCcc-------hhhhhhccccCCeEEEEeecCCC
Q 010046 348 VLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 380 (519)
Q Consensus 348 LiDTPG~~~f-------~~~~~~~l~~aD~vIlVVDas~g 380 (519)
+|||||+... ...+...++.+|++++|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 9999997532 23456778899999999998754
No 253
>PLN00023 GTP-binding protein; Provisional
Probab=99.50 E-value=1.6e-13 Score=140.95 Aligned_cols=148 Identities=19% Similarity=0.135 Sum_probs=93.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-- 340 (519)
....+||+|+|..|||||||+++|++... .....++.|.+.......+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F-----------------------------~~~~~pTIG~d~~ik~I~~~~~ 68 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSS-----------------------------IARPPQTIGCTVGVKHITYGSP 68 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCc-----------------------------ccccCCceeeeEEEEEEEECCc
Confidence 45668999999999999999999984211 00112223333332222232
Q ss_pred -----------CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-------
Q 010046 341 -----------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------- 402 (519)
Q Consensus 341 -----------~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~------- 402 (519)
.....+.||||+|++.|...+..+++.++++|+|+|++... .++.+..+..++......
T Consensus 69 ~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~---SFenL~kWl~eI~~~~~~s~p~~s~ 145 (334)
T PLN00023 69 GSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR---TKTSLQKWASEVAATGTFSAPLGSG 145 (334)
T ss_pred ccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcccccccccc
Confidence 13467999999999999999999999999999999999752 333333333333322110
Q ss_pred ---hCCCcEEEEEeecccccccchhH--HHHHHHHHHHHHhcCCC
Q 010046 403 ---FGVDQLIVAVNKMDAVQYSKDRF--DSIKVQLGTFLRSCGFK 442 (519)
Q Consensus 403 ---~~~ppiIVVvNKiDlv~~~~e~l--e~i~e~l~~~l~~~g~~ 442 (519)
....|+|||+||+||......+. ....+..+++++..|+-
T Consensus 146 ~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 146 GPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 01134999999999964211011 12356667777777754
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.50 E-value=9.2e-14 Score=121.82 Aligned_cols=107 Identities=25% Similarity=0.323 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+|+|.+|+|||||+|+|++...... ...++.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~------------------------------~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKV------------------------------SNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEE------------------------------SSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccc------------------------------cccccceeeeeeeeeeeceeeEE
Confidence 699999999999999999995321111 11122333232233445778889
Q ss_pred EEeCCCCCc---------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 348 VLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 348 LiDTPG~~~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
|+||||... ........+..+|++|||+|+... ......+++..++ ..+|+++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~--------~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP--------ITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH--------SHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 999999543 233456666889999999998763 3345556666664 44459999998
No 255
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.49 E-value=1.5e-13 Score=159.45 Aligned_cols=112 Identities=25% Similarity=0.398 Sum_probs=85.1
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc-ccc-
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-YSK- 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~-~~~- 422 (519)
.++|||||||+.|...+..++..+|++|+|+|++.+ +..++.+++.++...++| +|+|+||+|+.. +..
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G--------i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~ 597 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG--------FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNIS 597 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------CCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccc
Confidence 489999999999999888889999999999999977 567888888888888876 999999999963 221
Q ss_pred ----------hhHHHHHHH-------HHHHHHhcCCCC----------CCceEEEeccccCCCccccccc
Q 010046 423 ----------DRFDSIKVQ-------LGTFLRSCGFKD----------ASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 423 ----------e~le~i~e~-------l~~~l~~~g~~~----------~~i~~IpvSA~tGegI~el~~~ 465 (519)
.+.+..+++ +...|...|+.. ..+++|||||++|+||.+|...
T Consensus 598 ~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~ 667 (1049)
T PRK14845 598 EDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMM 667 (1049)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHH
Confidence 011122222 222345555542 3679999999999999998754
No 256
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.48 E-value=3.1e-13 Score=130.91 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee--cCCCeE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKNYH 345 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~--~~~~~~ 345 (519)
+|+|+|++|+|||||+++|.......+. ..++.......+ ......
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--------------------------------~s~~~~~~~~~~~~~~~~~~ 49 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--------------------------------TSIEPNVATFILNSEGKGKK 49 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc--------------------------------CcEeecceEEEeecCCCCce
Confidence 6999999999999999999843110000 000111111111 134678
Q ss_pred EEEEeCCCCCcchhhhhhccccC-CeEEEEeecCCCcccccccchhHHHHHHHHHHHH---h-CCCcEEEEEeecccccc
Q 010046 346 VVVLDSPGHKDFVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---F-GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~a-D~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~-~~ppiIVVvNKiDlv~~ 420 (519)
+.|||||||.++...+..++..+ +++|||+|+.... ..+......+..++.. . ...|++||+||+|+...
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch-----hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99999999999998888889998 9999999998641 1122222333232221 1 23459999999998753
No 257
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=2.5e-14 Score=127.21 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=111.7
Q ss_pred EEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEe
Q 010046 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (519)
Q Consensus 271 IVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiD 350 (519)
++|.+++|||.|+-|+-. + .|. ...-..+-||........+.....++++||
T Consensus 2 llgds~~gktcllir~kd--g--------------------afl------~~~fistvgid~rnkli~~~~~kvklqiwd 53 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKD--G--------------------AFL------AGNFISTVGIDFRNKLIDMDDKKVKLQIWD 53 (192)
T ss_pred ccccCccCceEEEEEecc--C--------------------cee------cCceeeeeeeccccceeccCCcEEEEEEee
Confidence 689999999999987751 1 110 000111234444445555667778999999
Q ss_pred CCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHH
Q 010046 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (519)
Q Consensus 351 TPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e 430 (519)
|+||++|...+..+++.+|++++|+|..+. .+|++++.+..++..+.+.. +. +.++.||+|+....... .+
T Consensus 54 tagqerfrsvt~ayyrda~allllydiank---asfdn~~~wlsei~ey~k~~-v~-l~llgnk~d~a~er~v~----~d 124 (192)
T KOG0083|consen 54 TAGQERFRSVTHAYYRDADALLLLYDIANK---ASFDNCQAWLSEIHEYAKEA-VA-LMLLGNKCDLAHERAVK----RD 124 (192)
T ss_pred ccchHHHhhhhHhhhcccceeeeeeecccc---hhHHHHHHHHHHHHHHHHhh-Hh-Hhhhccccccchhhccc----cc
Confidence 999999999999999999999999999987 67788888888887777653 23 68999999996421111 22
Q ss_pred HHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 431 ~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.-+.+.+..| ++|+++||++|.|++-.|..+
T Consensus 125 dg~kla~~y~-----ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 125 DGEKLAEAYG-----IPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred hHHHHHHHHC-----CCceeccccccccHhHHHHHH
Confidence 3334444555 588999999999999988654
No 258
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2e-13 Score=122.51 Aligned_cols=156 Identities=18% Similarity=0.143 Sum_probs=111.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++-+|||..|+|||.|+..|....... ....+.|+.+....+.+.....+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfma-----------------------------dcphtigvefgtriievsgqkik 61 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------DCPHTIGVEFGTRIIEVSGQKIK 61 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhh-----------------------------cCCcccceecceeEEEecCcEEE
Confidence 4678999999999999999998432111 11223566666666677778889
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC--cEEEEEeecccccccch
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p--piIVVvNKiDlv~~~~e 423 (519)
+.||||+|+++|...+.++++.+..+++|+|.++..+ +.....|+ .-++.+..| -++++.||.|+......
T Consensus 62 lqiwdtagqerfravtrsyyrgaagalmvyditrrst------ynhlsswl-~dar~ltnpnt~i~lignkadle~qrdv 134 (215)
T KOG0097|consen 62 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST------YNHLSSWL-TDARNLTNPNTVIFLIGNKADLESQRDV 134 (215)
T ss_pred EEEeecccHHHHHHHHHHHhccccceeEEEEehhhhh------hhhHHHHH-hhhhccCCCceEEEEecchhhhhhcccC
Confidence 9999999999999999999999999999999997632 22222222 222333333 26788999998743222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. -++.+.+....| +.|+++||++|+|+.+.|-..
T Consensus 135 ~----yeeak~faeeng-----l~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 135 T----YEEAKEFAEENG-----LMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred c----HHHHHHHHhhcC-----eEEEEecccccCcHHHHHHHH
Confidence 2 345556666666 478999999999999987543
No 259
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.47 E-value=2.4e-13 Score=131.30 Aligned_cols=159 Identities=19% Similarity=0.119 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+..+|+++|.+|+|||+|+.++++...... ..++.. ........++....
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~-----------------------------y~ptie-d~y~k~~~v~~~~~ 51 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVED-----------------------------YDPTIE-DSYRKELTVDGEVC 51 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccc-----------------------------cCCCcc-ccceEEEEECCEEE
Confidence 467899999999999999999984322110 011111 12223334555667
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.|+||+|++.|..+...++..++++++|++++.. .+|+.+......+........+| +|+|+||+|+.......
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~---~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V~ 127 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR---SSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQVS 127 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH---HHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccccC
Confidence 888999999999999999999999999999999976 34443333333332222222334 99999999998532222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++...+...++ ++|+++||+...++.++|..+
T Consensus 128 ----~eeg~~la~~~~-----~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 128 ----EEEGKALARSWG-----CAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred ----HHHHHHHHHhcC-----CcEEEeeccCCcCHHHHHHHH
Confidence 233333444444 468999999999999999754
No 260
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.46 E-value=1.9e-13 Score=119.49 Aligned_cols=119 Identities=24% Similarity=0.220 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|..|+|||||+++|++.... .........+.+..............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6999999999999999999954332 0000111123333333444555555699
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
|||++|++.+.......+..+|++|+|+|.+... +++.+..+..++..+-......|+|||+||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChH---HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999887776655688899999999999762 23322222233333332222345999999998
No 261
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.46 E-value=6e-13 Score=128.68 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=102.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|..|||||||+++|.+....... ..+.+...............
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~~~ 54 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGY-----------------------------PPTIGNLDPAKTIEPYRRNI 54 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccC-----------------------------CCceeeeeEEEEEEeCCCEE
Confidence 4489999999999999999999943221100 01111111111111111256
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~~~ 422 (519)
.+.+|||+|+++|...+..++..++++++|+|.... .............+.... .-|+|+|.||+|+.....
T Consensus 55 ~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~------~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 55 KLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLR------ESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred EEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccc------hhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 799999999999999999999999999999999863 113344445554444443 234999999999986432
Q ss_pred hhHHHHHHH---------HHHHHHhcCCCCCCceEEEeccc--cCCCcccccccc
Q 010046 423 DRFDSIKVQ---------LGTFLRSCGFKDASLTWIPLSAL--ENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~---------l~~~l~~~g~~~~~i~~IpvSA~--tGegI~el~~~i 466 (519)
.. ..+... .......... ....++.+||+ ++.++.++|...
T Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~v~~~~~~~ 180 (219)
T COG1100 129 SS-EEILNQLNREVVLLVLAPKAVLPEV--ANPALLETSAKSLTGPNVNELFKEL 180 (219)
T ss_pred HH-HHHHhhhhcCcchhhhHhHHhhhhh--cccceeEeecccCCCcCHHHHHHHH
Confidence 11 111111 1111111110 12337999999 999999998754
No 262
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=6.2e-14 Score=144.98 Aligned_cols=178 Identities=47% Similarity=0.869 Sum_probs=158.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|.|+|+..+||||+.. +.++.++.+.++++++++...++++|.|+|.++....++.++++++.....+...
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 3457899999999999999988 6678899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc--c
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--Y 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~--~ 420 (519)
.+-++++|.|||.+|...++.+..++|+++++|.+..+.|+..+. ..++++++..+...+++.++|+.+||||... +
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagis-kngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS-KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeecc-ccchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 999999999999999999999999999999999998887877776 4589999999999999998999999999764 4
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCC
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDA 444 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~ 444 (519)
...++.++.+.....++..++...
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~ 183 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPA 183 (391)
T ss_pred cccchhhhheeeeeeeeccccCCh
Confidence 566777787777777777776543
No 263
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=1.5e-12 Score=128.24 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=100.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..++..|+|+|.+|+|||||++.|++..... ......|. +.+ +...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~i----~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-ITV----VTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EEE----EecC
Confidence 4566789999999999999999998432100 00011221 111 2235
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+.+++++||||+. ..+...+..+|+++||+|+..+ +..+...++..+...+.|.+|+|+||+|+... .
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~--------~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~ 149 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFG--------FEMETFEFLNILQVHGFPRVMGVLTHLDLFKK-N 149 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcC--------CCHHHHHHHHHHHHcCCCeEEEEEeccccCCc-H
Confidence 6789999999964 4556667889999999999876 34566677778877787756679999999742 3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI 459 (519)
..++.+.+.++..+...-+ +..+++++||++.-.+
T Consensus 150 ~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRY 184 (225)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCC
Confidence 3345556666653332112 2358899999987444
No 264
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.44 E-value=3e-13 Score=122.18 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=111.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
...+.++|.-++|||||+|.+..... ...-+.|.......+...+..
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~---------------------------------~edmiptvGfnmrk~tkgnvt 66 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY---------------------------------LEDMIPTVGFNMRKVTKGNVT 66 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc---------------------------------hhhhcccccceeEEeccCceE
Confidence 45699999999999999999862100 001122333445556667789
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccc
Q 010046 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~ 422 (519)
+.+||.||+.+|..++..+.+.+++++||||+..+ +.+.....++..++.. .++| ++|++||+|+.++-.
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~------~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~ 139 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADP------DKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALS 139 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCc------ccchhhHHHHHHHhcchhhcCCc-EEEecccccCccccc
Confidence 99999999999999999999999999999999975 3355556666666644 2444 999999999986522
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
...+...+....+.+..+..+.+|++...||+.+.
T Consensus 140 ------~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 140 ------KIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred ------HHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 22333333444566777889999999999999873
No 265
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6.1e-13 Score=145.69 Aligned_cols=175 Identities=27% Similarity=0.372 Sum_probs=133.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.....+|.|+.|++.|||||...|+...+.+.++-..++ -++|....++.+|||+....+.....
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagki---------------rfld~redeq~rgitmkss~is~~~~ 70 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI---------------RFLDTREDEQTRGITMKSSAISLLHK 70 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccce---------------eeccccchhhhhceeeeccccccccC
Confidence 345688999999999999999999988887766542211 23788888999999998877777778
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc---
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--- 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~--- 419 (519)
++.++|||+|||.+|.....++.+.+|.++++||+..| +-.++..+++++-..+.. .|+|+||||.+-
T Consensus 71 ~~~~nlidspghvdf~sevssas~l~d~alvlvdvveg--------v~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el 141 (887)
T KOG0467|consen 71 DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEG--------VCSQTYAVLRQAWIEGLK-PILVINKIDRLITEL 141 (887)
T ss_pred ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccc--------cchhHHHHHHHHHHccCc-eEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999988 668898999888887877 699999999431
Q ss_pred --ccchhHH---HHHHHHHHHHH-------------------hcCCCCCCceEEEeccccCCCccc
Q 010046 420 --YSKDRFD---SIKVQLGTFLR-------------------SCGFKDASLTWIPLSALENQNLVT 461 (519)
Q Consensus 420 --~~~e~le---~i~e~l~~~l~-------------------~~g~~~~~i~~IpvSA~tGegI~e 461 (519)
.+.+.+. .+.+++...+. ...+.+..-.+++.||..|.|+.-
T Consensus 142 ~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~ 207 (887)
T KOG0467|consen 142 KLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGI 207 (887)
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccH
Confidence 1222222 22222222222 122334445679999999988754
No 266
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=125.38 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
-.++|+++|..-+|||+|+-|+...... -..+..+ ..+| ......++....
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTl--------QASF-------------------~~kk~n~ed~ra 62 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTL--------QASF-------------------QNKKVNVEDCRA 62 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHH--------HHHH-------------------hhccccccccee
Confidence 3578999999999999999998732210 0000000 0000 011112334556
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC-CcEEEEEeecccccccch
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~-ppiIVVvNKiDlv~~~~e 423 (519)
.+.||||+||++|-..-.-|++..+.+++|+|.+.. .+|+ ....|...+-..++. .-++||.||+||...
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFq---KVKnWV~Elr~mlGnei~l~IVGNKiDLEee--- 133 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQ---KVKNWVLELRTMLGNEIELLIVGNKIDLEEE--- 133 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHH---HHHHHHHHHHHHhCCeeEEEEecCcccHHHh---
Confidence 899999999999999999999999999999999965 3444 444444444444442 127899999998632
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.....++...+.+..|. .++.+||+.+.||.++|..+
T Consensus 134 -R~Vt~qeAe~YAesvGA-----~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 134 -RQVTRQEAEAYAESVGA-----LYMETSAKDNVGISELFESL 170 (218)
T ss_pred -hhhhHHHHHHHHHhhch-----hheecccccccCHHHHHHHH
Confidence 22345566677777764 56999999999999999753
No 267
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=4.1e-13 Score=136.67 Aligned_cols=163 Identities=19% Similarity=0.240 Sum_probs=109.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
..-|++||.|||||||||+++......|- .|.|+ +..+..|+ ..+ .....
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIa-----------------dYpFT------TL~PnLGv------V~~-~~~~s 208 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIA-----------------DYPFT------TLVPNLGV------VRV-DGGES 208 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCccc-----------------CCccc------cccCcccE------EEe-cCCCc
Confidence 44589999999999999999986544331 12221 12222222 222 35668
Q ss_pred EEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 346 l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
|++-|.||..+ ....+++++.++.++++|||.+...-....+.+.....|+..+-..+.-+|.+||+||||+.
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 99999999433 55667889999999999999996533233555666777777776666666699999999966
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ..+.++...+.+... .++. .+++|||.+++|+.++...+
T Consensus 289 ~-~~e~~~~~~~~l~~~---~~~~----~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 289 L-DEEELEELKKALAEA---LGWE----VFYLISALTREGLDELLRAL 328 (369)
T ss_pred c-CHHHHHHHHHHHHHh---cCCC----cceeeehhcccCHHHHHHHH
Confidence 4 344444444444433 2321 12349999999999997654
No 268
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.3e-13 Score=118.21 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=111.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
++.+|+.+|..+|||||++..|.-.... +.-.|.......+.+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~----------------------------------~~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV----------------------------------TTIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc----------------------------------ccccccceeEEEEEeeee
Confidence 4678999999999999999999721110 011122334445667889
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~ 422 (519)
.|.+||..|+....+.+..|+....++|||+|+... +.+.+...++..++.. +..-+++|..||-|+..+
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A-- 133 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR------DRIEEARNELHRIINDREMRDAIILILANKQDLPDA-- 133 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccch------hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--
Confidence 999999999999999999999999999999999854 3344455555555533 222348899999999854
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
...++ +..++.--.+++..+.+.|++|.+|+|+.+-+.
T Consensus 134 ~~pqe----i~d~leLe~~r~~~W~vqp~~a~~gdgL~egls 171 (180)
T KOG0071|consen 134 MKPQE----IQDKLELERIRDRNWYVQPSCALSGDGLKEGLS 171 (180)
T ss_pred cCHHH----HHHHhccccccCCccEeeccccccchhHHHHHH
Confidence 22233 444444444667778999999999999998753
No 269
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=6.3e-13 Score=138.37 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=100.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
...+.|+++|.+|||||||+|+|++........- -.|.+.....+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L-------------------------------FATLdpttR~~~l~~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQL-------------------------------FATLDPTTRRIELGD 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccc-------------------------------cccccCceeEEEeCC
Confidence 4567899999999999999999985433211111 11222222223333
Q ss_pred CeEEEEEeCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC--CcEEEEE
Q 010046 343 NYHVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAV 412 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~--ppiIVVv 412 (519)
+..+.|-||-|+.+-.+ .++.....+|++++|||++++. +..+......++...+. +|+|+|+
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~-------~~~~~~~v~~vL~el~~~~~p~i~v~ 311 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPE-------ILEKLEAVEDVLAEIGADEIPIILVL 311 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChh-------HHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 67899999999655322 2344556799999999999872 55667777777777643 5699999
Q ss_pred eecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
||+|++.. .. ....+... . + ..|++||++|+|++.+.+.+
T Consensus 312 NKiD~~~~--~~---~~~~~~~~----~---~--~~v~iSA~~~~gl~~L~~~i 351 (411)
T COG2262 312 NKIDLLED--EE---ILAELERG----S---P--NPVFISAKTGEGLDLLRERI 351 (411)
T ss_pred ecccccCc--hh---hhhhhhhc----C---C--CeEEEEeccCcCHHHHHHHH
Confidence 99998843 11 11111111 1 1 35999999999999988754
No 270
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.6e-13 Score=142.15 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=107.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
-+..++|+|+|.||+|||||+|+|......|+. +.+|+|.+.....++.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS------------------------------pv~GTTRDaiea~v~~~ 314 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS------------------------------PVPGTTRDAIEAQVTVN 314 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC------------------------------CCCCcchhhheeEeecC
Confidence 356799999999999999999999965554443 45899999999999999
Q ss_pred CeEEEEEeCCCCCc---------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----------
Q 010046 343 NYHVVVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---------- 403 (519)
Q Consensus 343 ~~~l~LiDTPG~~~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---------- 403 (519)
+..+.|+||+|..+ -.......+.++|++++|+|+....++.+. .+...+...
T Consensus 315 G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~--------~i~~~l~~~~~g~~~~~~~ 386 (531)
T KOG1191|consen 315 GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDL--------KIARILETEGVGLVVIVNK 386 (531)
T ss_pred CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccch--------HHHHHHHHhccceEEEecc
Confidence 99999999999665 112223456779999999999765433322 222222221
Q ss_pred -CCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCce-EEEeccccCCCcccccccc
Q 010046 404 -GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT-WIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 404 -~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~-~IpvSA~tGegI~el~~~i 466 (519)
...++|++.||+|+...-.. +......++...|. ...+ +..+|+++++|+..+.+++
T Consensus 387 ~~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~~~~--~~~~i~~~vs~~tkeg~~~L~~al 445 (531)
T KOG1191|consen 387 MEKQRIILVANKSDLVSKIPE----MTKIPVVYPSAEGR--SVFPIVVEVSCTTKEGCERLSTAL 445 (531)
T ss_pred ccccceEEEechhhccCcccc----ccCCceeccccccC--cccceEEEeeechhhhHHHHHHHH
Confidence 12468999999998842111 11111112222121 1223 4559999999999987643
No 271
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.3e-13 Score=123.31 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=78.9
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++||||+||++|...+...++.|=.+++++|.+.. .+|-....+..++.-.+.- ..|.||++.||.|+.+. .
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~--R 140 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQ--R 140 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhh--h
Confidence 5788999999999999999999999999999999865 4443333333333222222 34669999999999742 2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
.....+...+..++|+ |+|++||-+|.||.+..+
T Consensus 141 --~Vs~~qa~~La~kygl-----PYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 141 --VVSEDQAAALADKYGL-----PYFETSACTGTNVEKAVE 174 (219)
T ss_pred --hhhHHHHHHHHHHhCC-----CeeeeccccCcCHHHHHH
Confidence 1223455566666664 889999999999998754
No 272
>PTZ00099 rab6; Provisional
Probab=99.38 E-value=2.9e-12 Score=121.47 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=83.3
Q ss_pred cceEEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CC
Q 010046 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VD 406 (519)
Q Consensus 328 ~GiT~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~p 406 (519)
.|.........+......+.||||||+++|...+..+++.+|++|||+|++... + +.....++..+..... ..
T Consensus 13 ig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---s---f~~~~~w~~~i~~~~~~~~ 86 (176)
T PTZ00099 13 IGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---S---FENTTKWIQDILNERGKDV 86 (176)
T ss_pred cceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCC
Confidence 344443333445556688999999999999999999999999999999999752 2 3333334444443322 23
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|||+||+|+....... .++...+.+..+ ..|+++||++|+||.++|+.+
T Consensus 87 piilVgNK~DL~~~~~v~----~~e~~~~~~~~~-----~~~~e~SAk~g~nV~~lf~~l 137 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVT----YEEGMQKAQEYN-----TMFHETSAKAGHNIKVLFKKI 137 (176)
T ss_pred eEEEEEECcccccccCCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 489999999986321111 122233333333 467999999999999998754
No 273
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.2e-13 Score=140.41 Aligned_cols=135 Identities=33% Similarity=0.444 Sum_probs=114.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
-+..+|+|+.+.++||||...||++..+.+....- ..+| .++.|....++++|+|+......++|++
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~---------vddg----dtvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGD---------VDDG----DTVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccc---------cCCC----chHHHHHHHHHhcCceeeeeeeeccccc
Confidence 35678999999999999999999988775533210 0111 2456777889999999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
+++.|||||||.+|.-...+.++..|.++.|+|++.| +..++....+...++++| -++.+||||...+
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasag--------ve~qtltvwrqadk~~ip-~~~finkmdk~~a 169 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG--------VEAQTLTVWRQADKFKIP-AHCFINKMDKLAA 169 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC--------cccceeeeehhccccCCc-hhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999998 677888888888999998 6889999998854
No 274
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=2.2e-12 Score=123.83 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||+|+|++........ ...+.|...........+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL-----------------------------SASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc-----------------------------CCCCcccccceeeEEECCeEE
Confidence 479999999999999999999654321111 013444444444445577899
Q ss_pred EEEeCCCCCcch-------hhh----hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hC---CCcEEEE
Q 010046 347 VVLDSPGHKDFV-------PNM----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIVA 411 (519)
Q Consensus 347 ~LiDTPG~~~f~-------~~~----~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~---~ppiIVV 411 (519)
.||||||..+.. ..+ ......+|++|||+++.+. .......+..+.. ++ .+++|+|
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~~~~~ivv 122 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKVLDHTIVL 122 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHhHhcEEEE
Confidence 999999965431 111 2234668999999998752 2233344444433 22 2468999
Q ss_pred EeecccccccchhHHH----HHHHHHHHHHhcCCCCCCceEEEe-----ccccCCCcccccccc
Q 010046 412 VNKMDAVQYSKDRFDS----IKVQLGTFLRSCGFKDASLTWIPL-----SALENQNLVTAPDDG 466 (519)
Q Consensus 412 vNKiDlv~~~~e~le~----i~e~l~~~l~~~g~~~~~i~~Ipv-----SA~tGegI~el~~~i 466 (519)
+|+.|.+.. ..++. ....++.+++.++-. ++.. ++..+.++.+|++.+
T Consensus 123 ~T~~d~l~~--~~~~~~~~~~~~~l~~l~~~c~~r-----~~~f~~~~~~~~~~~q~~~Ll~~i 179 (196)
T cd01852 123 FTRGDDLEG--GTLEDYLENSCEALKRLLEKCGGR-----YVAFNNKAKGEEQEQQVKELLAKV 179 (196)
T ss_pred EECccccCC--CcHHHHHHhccHHHHHHHHHhCCe-----EEEEeCCCCcchhHHHHHHHHHHH
Confidence 999998742 22222 335667777777632 2232 356677777776544
No 275
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.36 E-value=1.2e-11 Score=125.57 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC--
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-- 343 (519)
.++|+|+|.+|+|||||+|+|++........... .........+.+......+...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~---------------------~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPD---------------------PAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCC---------------------ccccccCCceEEEEEEEEEEECCEE
Confidence 5789999999999999999998543221111000 00001112222222222233333
Q ss_pred eEEEEEeCCCCCcchhh---------------------hh-----hccc--cCCeEEEEeecCCCcccccccchhHHHHH
Q 010046 344 YHVVVLDSPGHKDFVPN---------------------MI-----SGAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~---------------------~~-----~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (519)
..++||||||..++... .. ..+. .+|+++|+++.... .+.....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-------~l~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-------GLKPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-------CCCHHHHH
Confidence 57999999996543221 00 1222 48899999998742 14455566
Q ss_pred HHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCC
Q 010046 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~ 441 (519)
.+..+.. +++ +|+|+||+|++ ....+...++.+.+.++..++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l--~~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTL--TPEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcC--CHHHHHHHHHHHHHHHHHcCC
Confidence 6666654 555 99999999998 445566778888888887764
No 276
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=6e-12 Score=127.73 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=101.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....+.|+|.|.||+|||||++.|.+....+ ...+-+|..+...+++..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEv-------------------------------A~YPFTTK~i~vGhfe~~ 213 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEV-------------------------------APYPFTTKGIHVGHFERG 213 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCcc-------------------------------CCCCccccceeEeeeecC
Confidence 3356789999999999999999999544322 122455667777888888
Q ss_pred CeEEEEEeCCCCCc--------chhhhhhcc-ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010046 343 NYHVVVLDSPGHKD--------FVPNMISGA-TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 343 ~~~l~LiDTPG~~~--------f~~~~~~~l-~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
..++++|||||.-+ .-...+.++ ...++++|++|.+.... + .+..|..-+..+-..+. +|+++|+|
T Consensus 214 ~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cg---y-~lE~Q~~L~~eIk~~f~-~p~v~V~n 288 (346)
T COG1084 214 YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCG---Y-SLEEQISLLEEIKELFK-APIVVVIN 288 (346)
T ss_pred CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccC---C-CHHHHHHHHHHHHHhcC-CCeEEEEe
Confidence 89999999999432 112223333 33789999999986521 1 13334433334444455 55999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
|+|.. ..+.++++.. .+...|... .+.+++..+.+++.+..
T Consensus 289 K~D~~--~~e~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~d~~~~ 329 (346)
T COG1084 289 KIDIA--DEEKLEEIEA----SVLEEGGEE----PLKISATKGCGLDKLRE 329 (346)
T ss_pred ccccc--chhHHHHHHH----HHHhhcccc----ccceeeeehhhHHHHHH
Confidence 99998 3344443333 333344322 37788888888887654
No 277
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.34 E-value=4.6e-12 Score=121.45 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=107.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceE-EEEEEEee-cCC
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYF-DSK 342 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT-~~~~~~~~-~~~ 342 (519)
..++++|||...+|||.|+-.+... .+..+..+.+. -......+ +..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~-------------------------------~fp~~yvPTVFdnys~~v~V~dg~ 51 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTN-------------------------------AFPEEYVPTVFDNYSANVTVDDGK 51 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccC-------------------------------cCcccccCeEEccceEEEEecCCC
Confidence 5689999999999999999877621 11111112121 01122334 366
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
.+.+.||||+||++|...+...+.++|++|++++...+.+ ++++ ..+|+.++.+....-|+|+|++|.||... .
T Consensus 52 ~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~nv--~~kW~pEi~~~cp~vpiiLVGtk~DLr~d-~ 125 (198)
T KOG0393|consen 52 PVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FENV--KSKWIPEIKHHCPNVPIILVGTKADLRDD-P 125 (198)
T ss_pred EEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HHHH--HhhhhHHHHhhCCCCCEEEEeehHHhhhC-H
Confidence 6789999999999999877778899999999999887733 3222 33444444444433349999999999842 2
Q ss_pred hhHHHH---------HHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010046 423 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 423 e~le~i---------~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
..++.+ .++...+.+.+|. ..++++||++..|+.++|+.+.+
T Consensus 126 ~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 126 STLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHHHHHHHHH
Confidence 111111 2334444445553 47899999999999999986543
No 278
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-12 Score=140.31 Aligned_cols=137 Identities=34% Similarity=0.556 Sum_probs=119.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+.|..+|||||.++++++.+.+..-.- ..++ -..++....++.+|+|+..+..++.|.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e--------v~~~-----~a~md~m~~er~rgITiqSAAt~~~w~~ 103 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE--------VRGG-----GATMDSMELERQRGITIQSAATYFTWRD 103 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccc--------cccC-----ceeeehHHHHHhcCceeeeceeeeeecc
Confidence 36788999999999999999999988775533210 0111 3468888999999999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+.++|||||||.+|.-+..++++..|.+|+|+|+..| .+.|+....++++..++| .|..+||||..+++.
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G--------VqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG--------VESQTETVWRQMKRYNVP-RICFINKMDRMGASP 173 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc--------eehhhHHHHHHHHhcCCC-eEEEEehhhhcCCCh
Confidence 9999999999999999999999999999999999988 788999999999999999 699999999987654
No 279
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.8e-12 Score=120.27 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=107.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
++....|+|+|.-+||||||+.++-...... ........ ...|...+...++..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~-------------------------~~~l~~~k-i~~tvgLnig~i~v~ 67 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKA-------------------------YGGLNPSK-ITPTVGLNIGTIEVC 67 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhh-------------------------hcCCCHHH-eecccceeecceeec
Confidence 4456779999999999999999985211000 00000000 011222333344445
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..+.|||..|++.....+..++..++++|+|||+++.. .++......+.+...-...++| +++.+||-|+.+.
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~-- 141 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNA-- 141 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhh--
Confidence 778999999999999999999999999999999999752 2222222333333333445667 8999999998743
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
....++...+.. ... +..+..+|.||||++|+||.+-.
T Consensus 142 ~~~~El~~~~~~-~e~--~~~rd~~~~pvSal~gegv~egi 179 (197)
T KOG0076|consen 142 MEAAELDGVFGL-AEL--IPRRDNPFQPVSALTGEGVKEGI 179 (197)
T ss_pred hhHHHHHHHhhh-hhh--cCCccCccccchhhhcccHHHHH
Confidence 333344443332 222 23455689999999999999963
No 280
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.33 E-value=5.2e-12 Score=120.14 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
...|+|+|+.|+|||+|+.+|.+..... ++. ...+ ......-......
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~t-------------------------S~e~----n~~~~~~~~~~~~ 50 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP---TVT-------------------------SMEN----NIAYNVNNSKGKK 50 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS------B----------------------------SSE----EEECCGSSTCGTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC---eec-------------------------cccC----CceEEeecCCCCE
Confidence 4569999999999999999998531100 000 0000 0000001224568
Q ss_pred EEEEeCCCCCcchhhhhhc---cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH----hCCCcEEEEEeecccc
Q 010046 346 VVVLDSPGHKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 418 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~~ppiIVVvNKiDlv 418 (519)
+.|||+|||.+........ +..+.++|||||++.. . ..+......+..++.. .+.+|++|++||.|+.
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~---~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--Q---KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--H---HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--h---hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 9999999999988877765 8889999999999842 1 1123333333333322 2446799999999998
Q ss_pred cccchhHHHHHHHHHHHHHh
Q 010046 419 QYSKDRFDSIKVQLGTFLRS 438 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~ 438 (519)
.+.. ...++..++..+..
T Consensus 126 ~A~~--~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 126 TAKP--PKKIKKLLEKEIDK 143 (181)
T ss_dssp T-----HHHHHHHHHHHHHH
T ss_pred ccCC--HHHHHHHHHHHHHH
Confidence 5432 23344445444433
No 281
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.9e-12 Score=115.54 Aligned_cols=154 Identities=23% Similarity=0.205 Sum_probs=106.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+..+|.++|.-|+||+|++-+|---.+..+. .|+..+...+.+++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk----------------------------------Ptigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK----------------------------------PTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC----------------------------------CCCCcCccccccccc
Confidence 5678999999999999999888622221111 122334444666889
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~ 422 (519)
++.+||..|+-...+.+..|+...|++|||||.++. +.+.....++..++.+ +....+++++||+|....
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~------dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDR------DRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccch------hhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--
Confidence 999999999999999999999999999999999865 2233334444444443 222337899999997643
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
....++...|.-..+.+..+.+|..||.+|+|+++.++
T Consensus 135 ----~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~D 172 (182)
T KOG0072|consen 135 ----LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMD 172 (182)
T ss_pred ----hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHH
Confidence 22333333333333344457889999999999999843
No 282
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=8e-13 Score=122.99 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=108.6
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
+..+.++++|+|..++||||+|.++.. |..+. ......|+.+......+..
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCk--gifTk---------------------------dykktIgvdflerqi~v~~ 66 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCK--GIFTK---------------------------DYKKTIGVDFLERQIKVLI 66 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhc--ccccc---------------------------ccccccchhhhhHHHHhhH
Confidence 445679999999999999999999982 11111 0111122222222223444
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..+.+|||+|+++|...+..++++|.+.+||+..+.. ..+.....+...+....+..|.++|-||||++..+
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr------~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR------YSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH------HHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 566788999999999999999999999999999999865 22444555555556666655699999999999543
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
... ..+++.+.+.+. ..++-+|++...|+..+|.-
T Consensus 141 ~~~----~~evE~lak~l~-----~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 141 QMD----KGEVEGLAKKLH-----KRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred hcc----hHHHHHHHHHhh-----hhhhhhhhhhhhhhHHHHHH
Confidence 322 222222333322 24488999999999999864
No 283
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=7.5e-12 Score=124.46 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=102.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEE-EEEEeecC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDS 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~-~~~~~~~~ 341 (519)
.+++++|.|+|.+|+|||||+|+|+.......... |++.+ ........
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-------------------------------g~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-------------------------------GVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeec-------------------------------ccCCCchhhHHhhc
Confidence 66789999999999999999999994332221110 00000 00011223
Q ss_pred CCeEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC-CcEEEEEe
Q 010046 342 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVN 413 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~-ppiIVVvN 413 (519)
....++||||||..+ +......++...|++++++++... .......++..+..... .++|+++|
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dr--------aL~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDR--------ALGTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCc--------cccCCHHHHHHHHHhccCceeEEEEe
Confidence 446799999999655 777788899999999999999876 23344444444433333 56999999
Q ss_pred eccccccc-----------chhHHHHH---HHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 414 KMDAVQYS-----------KDRFDSIK---VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~-----------~e~le~i~---e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+|..... ....+.+. +.+.++++. --+++.+++..+.|+.++..++
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~l~~al 217 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKELVRAL 217 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHHHHHHH
Confidence 99976421 11122222 223333322 2477899999999999987653
No 284
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=111.00 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=107.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-C
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-~ 342 (519)
.+.+||+++|--+||||||+..|.+.... ..-++.|..+ ..+.. .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~------------------------------hltpT~GFn~----k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR------------------------------HLTPTNGFNT----KKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh------------------------------hccccCCcce----EEEeecC
Confidence 56799999999999999999999843221 1111222222 12223 3
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh---CCCcEEEEEeeccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~~ppiIVVvNKiDlv~ 419 (519)
..++++||..|++.....+..|+...|.+|||||++... .+.....++..++... .+| +.|..||-|++.
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k------rfeE~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK------RFEEISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH------hHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 378999999999999999999999999999999977542 2334555555555443 345 899999999884
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
+ ... +++..-+.-.++.+..+.+-.+||++++|+..-.
T Consensus 134 a--a~~----eeia~klnl~~lrdRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 134 A--AKV----EEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred h--cch----HHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence 3 222 2233334445666667788999999999998863
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.28 E-value=3.2e-12 Score=132.49 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..++|+||+|...-... ....+|++++|++...+ +.++......+.++ -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~g------d~iq~~k~gi~E~a-------DIiVVNKaDl~~~ 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAG------DELQGIKKGIMELA-------DLIVINKADGDNK 209 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCch------HHHHHHHhhhhhhh-------heEEeehhcccch
Confidence 45688999999996632222 35569999999875544 11222222122222 3899999999842
Q ss_pred cchhHHHHHHHHHHHHHhcCCC--CCCceEEEeccccCCCccccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~--~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
...+....++...+...... ....+++++||++|.||.++.+.+.
T Consensus 210 --~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~ 256 (332)
T PRK09435 210 --TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIE 256 (332)
T ss_pred --hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 33444555566665442211 1224789999999999999987654
No 286
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.26 E-value=3e-11 Score=122.39 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
..+|++||.|++|||||+++|++....+. . ...++.+..+|+ +++++..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva-----------------~------y~FTTl~~VPG~--------l~Y~ga~ 111 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVA-----------------D------YPFTTLEPVPGM--------LEYKGAQ 111 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCcccc-----------------c------cCceecccccce--------EeecCce
Confidence 46799999999999999999995432211 1 112233333444 6778999
Q ss_pred EEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCC
Q 010046 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (519)
Q Consensus 346 l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (519)
++|+|+||... -....++.++.||++|+|+|+...
T Consensus 112 IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 112 IQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred EEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 99999999432 235677888999999999999854
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.26 E-value=4.1e-13 Score=133.43 Aligned_cols=189 Identities=13% Similarity=0.201 Sum_probs=88.3
Q ss_pred EEcCCCCCchhHhHHhhhhcccccccc-hhhhhH-------HHHhhCCCccchhhcccccccccccceEEEEEEEe--e-
Q 010046 271 IVGHVDSGKSTLSGRLLFLLGRITQKQ-MHKYEK-------EAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--F- 339 (519)
Q Consensus 271 IVG~~gAGKSTLInrLl~~~~~i~~~~-v~~~~~-------~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~--~- 339 (519)
|+|++|+||||+++++........+.. +..+.. ....+.+..+...-++......+++++........ +
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 689999999999999975543321111 001110 01111111222223333333344333322111110 0
Q ss_pred ------cCCCeEEEEEeCCCCCcchhhhhh------ccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC
Q 010046 340 ------DSKNYHVVVLDSPGHKDFVPNMIS------GAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (519)
Q Consensus 340 ------~~~~~~l~LiDTPG~~~f~~~~~~------~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ 405 (519)
......+.|+|||||.++...+.. .+. ..-++|+++|+.... +...+.......+....+++.
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~---~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCS---DPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-S---SHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEeccccc---ChhhHHHHHHHHHHHHhhCCC
Confidence 001227999999998775544322 333 356899999998542 222233344444445556788
Q ss_pred CcEEEEEeecccccccc----------hh--------HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 406 DQLIVAVNKMDAVQYSK----------DR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 406 ppiIVVvNKiDlv~~~~----------e~--------le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
| .|.|+||+|++.... +. .....+.+..++...+. ...|+|+|+.+++|+.+++..+
T Consensus 158 P-~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 158 P-HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp E-EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTTTHHHHHHHH
T ss_pred C-EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChHHHHHHHHHH
Confidence 8 899999999985211 01 12222333344333333 1278999999999999997654
No 288
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.3e-11 Score=133.42 Aligned_cols=133 Identities=25% Similarity=0.311 Sum_probs=103.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEE-----
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA----- 337 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~----- 337 (519)
..+.++|+++|+-.+|||+|+..|....+-...... .. -.-+.+.+..++++|.++.....
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~-----------e~---~lrytD~l~~E~eRg~sIK~~p~Tl~l~ 190 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNT-----------EA---DLRYTDTLFYEQERGCSIKSTPVTLVLS 190 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccc-----------cc---cccccccchhhHhcCceEeecceEEEEe
Confidence 456789999999999999999999866542111110 01 12345667778888888754332
Q ss_pred eecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 338 YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 338 ~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
....+.+-++|+|||||..|..++...++.+|++++|||+..| ++-.+..++..+.+...| +++|+||+|.
T Consensus 191 D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG--------VmlntEr~ikhaiq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 191 DSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEG--------VMLNTERIIKHAIQNRLP-IVVVINKVDR 261 (971)
T ss_pred cCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccC--------ceeeHHHHHHHHHhccCc-EEEEEehhHH
Confidence 2344567899999999999999999999999999999999988 566888888888888888 9999999996
Q ss_pred c
Q 010046 418 V 418 (519)
Q Consensus 418 v 418 (519)
+
T Consensus 262 L 262 (971)
T KOG0468|consen 262 L 262 (971)
T ss_pred H
Confidence 5
No 289
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.25 E-value=5.4e-11 Score=117.63 Aligned_cols=162 Identities=18% Similarity=0.274 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CCCeEE
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYHV 346 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~~~~l 346 (519)
||+++|..++||||+.+.+.+....-. -..-|.|+.+....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d------------------------------T~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD------------------------------TLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG------------------------------GGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh------------------------------ccccCCcCCceEEEEecCCCcEE
Confidence 699999999999999999984322110 0113445555555554 345699
Q ss_pred EEEeCCCCCcchhhh-----hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccc
Q 010046 347 VVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQY 420 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~-----~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~ 420 (519)
.|||.||+..+.... ..-++.+.++|||+|+.......++ ......+..+...+ ..++.|+++|||++..
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l----~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDL----AYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHH----HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHH----HHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 999999998877653 3446789999999999954322222 22333333333332 2248899999999852
Q ss_pred --cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 421 --SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 --~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+.++.+.+.+...+...++. .+.++.+|... +.|.+.+..+
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D-~Sly~A~S~I 171 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWD-ESLYEAWSKI 171 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTS-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcC-cHHHHHHHHH
Confidence 2344667777888888777654 57889999987 4777776654
No 290
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=4.5e-12 Score=126.73 Aligned_cols=189 Identities=24% Similarity=0.287 Sum_probs=124.3
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhccccccccc-ccceEEEE-----E
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER-ERGITMTV-----A 335 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~-~~GiT~~~-----~ 335 (519)
.++..++|+-+||+-.||||++.++.+-.. ...+.+-+.+++.+-.|+.+-...-..... .++--... .
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~T-----vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d 108 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHT-----VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKED 108 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceE-----EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCC
Confidence 356789999999999999999999984211 111112222222222221111100000000 00000000 0
Q ss_pred EEeecCC--------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCc
Q 010046 336 VAYFDSK--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (519)
Q Consensus 336 ~~~~~~~--------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~pp 407 (519)
...++.. -+.+.|+|+|||.-.+..|+.+....|+++++|.++... -+.|+.+|+.....+..++
T Consensus 109 ~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC-------PQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 109 RPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC-------PQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred CCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-------CCCchhhHHHHHHHhhhce
Confidence 0000000 145789999999999999999999999999999998763 5689999999999999999
Q ss_pred EEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 408 iIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|++-||+|+.. +++..+..+++..|++.... .+.+++|+||.-+.||+-+.+.+
T Consensus 182 iiilQNKiDli~--e~~A~eq~e~I~kFi~~t~a--e~aPiiPisAQlkyNId~v~eyi 236 (466)
T KOG0466|consen 182 IIILQNKIDLIK--ESQALEQHEQIQKFIQGTVA--EGAPIIPISAQLKYNIDVVCEYI 236 (466)
T ss_pred EEEEechhhhhh--HHHHHHHHHHHHHHHhcccc--CCCceeeehhhhccChHHHHHHH
Confidence 999999999994 44445556677777765443 45689999999999999886643
No 291
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8.7e-11 Score=112.72 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=98.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.....|.++|..++|||+|+-+|+..... . .-+++.-....+....
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~---~-------------------------------TvtSiepn~a~~r~gs 81 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHR---G-------------------------------TVTSIEPNEATYRLGS 81 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCcc---C-------------------------------eeeeeccceeeEeecC
Confidence 33467999999999999999999843110 0 0111111222233344
Q ss_pred eEEEEEeCCCCCcchhhhhhccc---cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH----hCCCcEEEEEeecc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 416 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~---~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~~ppiIVVvNKiD 416 (519)
..+.|+|.|||.+.......++. .+-++|||||+.... ..+....+.+..++.. .+.+|++|+.||.|
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~-----k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL-----KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc-----hhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 55899999999999888888777 799999999998531 1233444444444433 24567999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhc-------------------------------CCCCCCceEEEeccccCCCcccc
Q 010046 417 AVQYSKDRFDSIKVQLGTFLRSC-------------------------------GFKDASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~-------------------------------g~~~~~i~~IpvSA~tGegI~el 462 (519)
+..+... +.|+++++..+... .+.+..+.|.+.|+++| ++.++
T Consensus 157 l~tAkt~--~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~ 230 (238)
T KOG0090|consen 157 LFTAKTA--EKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQW 230 (238)
T ss_pred hhhcCcH--HHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHH
Confidence 9754332 23444443333211 11224467888888888 66665
No 292
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.16 E-value=2.4e-10 Score=118.22 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCC----Ccc---hhhhhhccccCCeEEEEeecCC
Q 010046 343 NYHVVVLDSPGH----KDF---VPNMISGATQSDAAILVIDASV 379 (519)
Q Consensus 343 ~~~l~LiDTPG~----~~f---~~~~~~~l~~aD~vIlVVDas~ 379 (519)
...+.||||||. ..+ ...++..++.+|++++|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 357999999996 222 2355667999999999999974
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.14 E-value=1.1e-10 Score=122.18 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=83.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
..+++|+|+|.+|+|||||||+|.|-...-.... ..+. ..+|..... +...
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA-----------------------~tGv---~etT~~~~~--Y~~p~ 84 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAA-----------------------PTGV---VETTMEPTP--YPHPK 84 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS-------------------------SSS---HSCCTS-EE--EE-SS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcC-----------------------CCCC---CcCCCCCee--CCCCC
Confidence 4578999999999999999999975322100000 0000 001111111 1112
Q ss_pred CeEEEEEeCCCCCc--chhhh---hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 343 NYHVVVLDSPGHKD--FVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 343 ~~~l~LiDTPG~~~--f~~~~---~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
-..++|||.||... |.... ...+...|++|+|.+.. +.....+++..+..++.+ +.+|-+|+|.
T Consensus 85 ~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----------f~~ndv~La~~i~~~gK~-fyfVRTKvD~ 153 (376)
T PF05049_consen 85 FPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----------FTENDVQLAKEIQRMGKK-FYFVRTKVDS 153 (376)
T ss_dssp -TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--HHH
T ss_pred CCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----------CchhhHHHHHHHHHcCCc-EEEEEecccc
Confidence 23589999999432 22111 11466689888877655 557778888888889888 9999999996
Q ss_pred -cc---------cc-chhHHHHHHHHHHHHHhcCCCCCCceEEEecccc
Q 010046 418 -VQ---------YS-KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (519)
Q Consensus 418 -v~---------~~-~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~t 455 (519)
+. .+ ...+++|++.....|+..|...+ ++|-||...
T Consensus 154 Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P--~VFLVS~~d 200 (376)
T PF05049_consen 154 DLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEP--QVFLVSSFD 200 (376)
T ss_dssp HHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS----EEEB-TTT
T ss_pred cHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcC--ceEEEeCCC
Confidence 11 11 23467888888888888887665 668888875
No 294
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.12 E-value=8.6e-10 Score=110.43 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=73.0
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
+...+++|+|+|.+|+|||||+|+|++........ ..+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~------------------------------~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA------------------------------FQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC------------------------------CCCceEEEEEEEEEE
Confidence 44567899999999999999999999643211110 112233333334445
Q ss_pred CCeEEEEEeCCCCCcch------hh----hhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCC---
Q 010046 342 KNYHVVVLDSPGHKDFV------PN----MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV--- 405 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~------~~----~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~--- 405 (519)
.+..+.||||||..+.. .. +..++ ...++++||....... +......+++.+.. ++.
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r-------~~~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR-------RDYLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhChhhH
Confidence 67889999999966542 11 11222 2478888886555321 11233333333332 332
Q ss_pred CcEEEEEeeccccc
Q 010046 406 DQLIVAVNKMDAVQ 419 (519)
Q Consensus 406 ppiIVVvNKiDlv~ 419 (519)
.++|||+||+|...
T Consensus 150 ~~~ivV~T~~d~~~ 163 (249)
T cd01853 150 RNAIVVLTHAASSP 163 (249)
T ss_pred hCEEEEEeCCccCC
Confidence 35999999999874
No 295
>PRK13768 GTPase; Provisional
Probab=99.12 E-value=1.1e-10 Score=116.94 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCCCcch------hhhhhcccc--CCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 343 NYHVVVLDSPGHKDFV------PNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~------~~~~~~l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
+..++||||||+.++. ..+...+.. ++++++|+|+..+....++ .....-.+......+.| +|+|+||
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~---~~~~~l~~~~~~~~~~~-~i~v~nK 171 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDF---VSLLLLALSVQLRLGLP-QIPVLNK 171 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHH---HHHHHHHHHHHHHcCCC-EEEEEEh
Confidence 3479999999975532 222333333 8999999999765221111 11110011111134555 8999999
Q ss_pred cccccccchhHHHHHHHHH------------------------HHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 415 MDAVQYSKDRFDSIKVQLG------------------------TFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~------------------------~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+... ...+...+.+. ..++..+ ...+++++||++++|+.++.+.+
T Consensus 172 ~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~gl~~L~~~I 242 (253)
T PRK13768 172 ADLLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGEGFDELYAAI 242 (253)
T ss_pred HhhcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCcCHHHHHHHH
Confidence 999843 22222222222 1223333 23478999999999999987643
No 296
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=6.9e-10 Score=118.05 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecC
Q 010046 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 344 ~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas 378 (519)
..+.||||||... ....++..++.+|++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5689999999422 3445667789999999999997
No 297
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.08 E-value=1.7e-10 Score=106.97 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCeEEEEEeCCCCCc----chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKD----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~----f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
....+.|+||||... ....+..++..+|++|||+++... +.....+.+..........+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~--------~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD--------LTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST--------GGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc--------cchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 345799999999532 335567788999999999999986 333333333333333344499999995
No 298
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.07 E-value=1.4e-09 Score=111.43 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
......++|+|+|.+|+|||||+|+|++......... . ..+.+.. .....
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-------------------------~---s~t~~~~--~~~~~ 82 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-------------------------Q---SEGLRPM--MVSRT 82 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-------------------------C---CcceeEE--EEEEE
Confidence 3446778999999999999999999996543221110 0 0011111 11122
Q ss_pred CCCeEEEEEeCCCCCcch---hhhhhcc------ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hC---CCc
Q 010046 341 SKNYHVVVLDSPGHKDFV---PNMISGA------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQ 407 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~---~~~~~~l------~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~---~pp 407 (519)
..+..+.||||||..+.. ......+ ..+|++|||....... +......++..+.. ++ ..+
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-------~~~~DkqlLk~Iqe~FG~~iw~~ 155 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-------VDTLDGQVIRAITDSFGKDIWRK 155 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-------CCHHHHHHHHHHHHHhhhhhhcc
Confidence 357899999999966532 1111111 2599999995543221 11222233332222 22 235
Q ss_pred EEEEEeeccccc
Q 010046 408 LIVAVNKMDAVQ 419 (519)
Q Consensus 408 iIVVvNKiDlv~ 419 (519)
+|||+|+.|...
T Consensus 156 ~IVVfTh~d~~~ 167 (313)
T TIGR00991 156 SLVVLTHAQFSP 167 (313)
T ss_pred EEEEEECCccCC
Confidence 999999999774
No 299
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=6.5e-10 Score=104.81 Aligned_cols=155 Identities=21% Similarity=0.179 Sum_probs=110.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
....+++++|..|.||||++++.+-. ..........|+...-.....+...
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltg-----------------------------eFe~~y~at~Gv~~~pl~f~tn~g~ 58 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTG-----------------------------EFEKTYPATLGVEVHPLLFDTNRGQ 58 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcc-----------------------------cceecccCcceeEEeeeeeecccCc
Confidence 45789999999999999999998821 1112222334444433333333445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
.+|..|||.|++.+......++-+..++|+++|+....+ +.....++..+++..+..||++++||+|.... .
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t------~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r-~- 130 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT------YKNVPRWHRDLVRVRENIPIVLCGNKVDIKAR-K- 130 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhh------hhcchHHHHHHHHHhcCCCeeeeccceecccc-c-
Confidence 899999999999999999999999999999999996533 56677788888887766559999999997632 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
.+..-..+. ...++.++.+||+++.|...-|.
T Consensus 131 ----~k~k~v~~~-----rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 131 ----VKAKPVSFH-----RKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred ----cccccceee-----ecccceeEEeecccccccccchH
Confidence 111111121 12457889999999999998764
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.03 E-value=2.3e-10 Score=111.02 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=60.5
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..++|++|.|..... ..+....+..+.|+|+..+.. ... ......+.+ .++++||+|+.....
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--------~~~----~~~~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--------KPL----KYPGMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--------hhh----hhHhHHhhC-CEEEEEHHHccccch
Confidence 4588999999931111 111233566778999986511 111 111222334 799999999985322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.......+.++. .+ +..+++++||++|+|+.++++.+
T Consensus 166 ~~~~~~~~~l~~----~~---~~~~i~~~Sa~~g~gv~~l~~~i 202 (207)
T TIGR00073 166 FDVEKMKADAKK----IN---PEAEIILMSLKTGEGLDEWLEFL 202 (207)
T ss_pred hhHHHHHHHHHH----hC---CCCCEEEEECCCCCCHHHHHHHH
Confidence 223334443333 22 24678999999999999998643
No 301
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.00 E-value=5.5e-10 Score=118.35 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=104.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.....+++|+|.+|+|||||+|.+..... ...+..-+|..+...+++++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv-------------------------------evqpYaFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-------------------------------EVQPYAFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc-------------------------------ccCCcccccchhhhhhhhhh
Confidence 34567899999999999999998873222 11222334455556667777
Q ss_pred CeEEEEEeCCCCCc------chhhhhh--c-cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010046 343 NYHVVVLDSPGHKD------FVPNMIS--G-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 343 ~~~l~LiDTPG~~~------f~~~~~~--~-l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
-..++++||||.-+ ...+|.. + ++.--+|+|++|.+.... -++..|..-...+-..+..+++|+|+|
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CG----ySva~QvkLfhsIKpLFaNK~~IlvlN 289 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCG----YSVAAQVKLYHSIKPLFANKVTILVLN 289 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhC----CCHHHHHHHHHHhHHHhcCCceEEEee
Confidence 78999999999433 1122211 1 122346899999885421 113334443334444455566999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
|+|+. ..+.+.+-.+++.+.+...+ +++++.+|..+.+|+.++...
T Consensus 290 K~D~m--~~edL~~~~~~ll~~~~~~~----~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 290 KIDAM--RPEDLDQKNQELLQTIIDDG----NVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred ccccc--CccccCHHHHHHHHHHHhcc----CceEEEecccchhceeeHHHH
Confidence 99998 44555555555555555544 478899999999999997653
No 302
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.00 E-value=2.4e-09 Score=104.43 Aligned_cols=135 Identities=22% Similarity=0.301 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+||||++|.|++......... ...+|...........+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~-----------------------------~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSS-----------------------------AKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TT-----------------------------TSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccc-----------------------------cCCcccccceeeeeecceEE
Confidence 5899999999999999999996543211100 01122222223335577899
Q ss_pred EEEeCCCCCc-------chhhhh----hccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH-HhC---CCcEEEE
Q 010046 347 VVLDSPGHKD-------FVPNMI----SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFG---VDQLIVA 411 (519)
Q Consensus 347 ~LiDTPG~~~-------f~~~~~----~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~---~ppiIVV 411 (519)
+||||||.-+ ....+. ......+++|||+.... +.......+..+. .++ ..++|||
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 9999999432 112222 23456999999999883 2233333333332 233 3469999
Q ss_pred EeecccccccchhHHHHH-----HHHHHHHHhcCC
Q 010046 412 VNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGF 441 (519)
Q Consensus 412 vNKiDlv~~~~e~le~i~-----e~l~~~l~~~g~ 441 (519)
+|..|...... +++.. ..+..+++.++-
T Consensus 123 fT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 123 FTHADELEDDS--LEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp EEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcccccccc--HHHHHhccCchhHhHHhhhcCC
Confidence 99999874322 32222 347778887874
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.99 E-value=1.4e-09 Score=111.81 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=62.2
Q ss_pred cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 340 ~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
+..++.++|+||||..... ...+..+|.+++|.....+ ........- ....+ .++|+||+|+..
T Consensus 123 ~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~----------~el~~~~~~--l~~~~-~ivv~NK~Dl~~ 186 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG----------DDLQGIKAG--LMEIA-DIYVVNKADGEG 186 (300)
T ss_pred HhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc----------HHHHHHHHH--Hhhhc-cEEEEEcccccc
Confidence 3457899999999954222 2345668898888665533 111111111 12344 799999999985
Q ss_pred ccchhHHHHHHHHHHHHHhcC--CCCCCceEEEeccccCCCccccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g--~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.. ....+...+...+..+. ......+++++||++|+|+.+++..+.
T Consensus 187 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~ 234 (300)
T TIGR00750 187 AT--NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIE 234 (300)
T ss_pred hh--HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHH
Confidence 32 11111212111111110 001123689999999999999987653
No 304
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.99 E-value=8.9e-10 Score=118.69 Aligned_cols=157 Identities=19% Similarity=0.158 Sum_probs=104.1
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010046 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.+||+|+|..|+||||||-+|+...-...-+. +.+.+++- ..+.-
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~----------------------------rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPR----------------------------RLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccc----------------------------cCCccccC---CccCc
Confidence 356789999999999999999999995432111110 01112211 12223
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC----CCcEEEEEeeccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG----VDQLIVAVNKMDA 417 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~----~ppiIVVvNKiDl 417 (519)
.....+|+||+-..+-.......+++||++++|+++.+..+ +......++.++++.. ..|+|+|.||+|.
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T------~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~ 127 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST------VDRISTKWLPLIRQLFGDYHETPVILVGNKSDN 127 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH------hhhhhhhhhhhhhcccCCCccCCEEEEeeccCC
Confidence 44568999999777766777888999999999999987633 3444555556666544 2359999999999
Q ss_pred ccccchhHHH----HHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 418 VQYSKDRFDS----IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 418 v~~~~e~le~----i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
........+. |++++..+ . ..|.|||++-.++.++|--
T Consensus 128 ~~~~~~s~e~~~~pim~~f~Ei----E------tciecSA~~~~n~~e~fYy 169 (625)
T KOG1707|consen 128 GDNENNSDEVNTLPIMIAFAEI----E------TCIECSALTLANVSELFYY 169 (625)
T ss_pred ccccccchhHHHHHHHHHhHHH----H------HHHhhhhhhhhhhHhhhhh
Confidence 8654442232 22222222 1 3489999999999999853
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.98 E-value=4.8e-10 Score=99.26 Aligned_cols=134 Identities=23% Similarity=0.228 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.||++||.+|+|||||.+.|.|....-.+ |. .+++++.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK-----------------------------------TQ-----Ave~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK-----------------------------------TQ-----AVEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc-----------------------------------cc-----eeeccCc--
Confidence 47999999999999999999854221100 00 0112111
Q ss_pred EEEeCCC----CCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 347 ~LiDTPG----~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
-.||||| |..+....+.....+|++++|-.++++.+. --..++..+.. |+|-|++|+|+.. .
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~-----------f~p~f~~~~~k-~vIgvVTK~DLae--d 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR-----------FPPGFLDIGVK-KVIGVVTKADLAE--D 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc-----------CCccccccccc-ceEEEEecccccc--h
Confidence 2489999 556666666677889999999999977321 11222223333 4999999999983 2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
.+ .+..+.+|...|-. ++|.+|+....||.+++.
T Consensus 106 ~d----I~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 106 AD----ISLVKRWLREAGAE----PIFETSAVDNQGVEELVD 139 (148)
T ss_pred Hh----HHHHHHHHHHcCCc----ceEEEeccCcccHHHHHH
Confidence 33 34556677777742 569999999999999875
No 306
>PTZ00258 GTP-binding protein; Provisional
Probab=98.98 E-value=4.8e-09 Score=110.97 Aligned_cols=84 Identities=20% Similarity=0.100 Sum_probs=54.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC--
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-- 341 (519)
...++|+|||.||+|||||+|+|.+....+.. .++.|+......+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n-------------------------------~pftTi~p~~g~v~~~d 67 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAEN-------------------------------FPFCTIDPNTARVNVPD 67 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccC-------------------------------CCCCcccceEEEEeccc
Confidence 44578999999999999999999854321111 122222211111111
Q ss_pred ---------------CCeEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecC
Q 010046 342 ---------------KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 342 ---------------~~~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas 378 (519)
...++.|+||||... ....++..++.+|++|+|||+.
T Consensus 68 ~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 68 ERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 123589999999432 4445677889999999999984
No 307
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.97 E-value=1.5e-09 Score=105.10 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=61.9
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
...++||+|.|..- ..... ...++.+|.|+|+..+.. ..... ....... =++++||+|+.+...
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~---------~~~~~---~~qi~~a-d~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDK---------IPRKG---GPGITRS-DLLVINKIDLAPMVG 154 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhh---------hhhhh---HhHhhhc-cEEEEEhhhcccccc
Confidence 46788999999321 11111 122688999999997621 11111 1111111 289999999984323
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++.+.+.++.+ + +..+++++||++|+|+.++++.+
T Consensus 155 ~~~~~~~~~~~~~----~---~~~~i~~~Sa~~g~gi~el~~~i 191 (199)
T TIGR00101 155 ADLGVMERDAKKM----R---GEKPFIFTNLKTKEGLDTVIDWI 191 (199)
T ss_pred ccHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHHHHHHH
Confidence 4444455555444 2 34688999999999999998744
No 308
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=96.85 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=116.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.-.++|+++|.+..|||||+-...+.... .....+.|+..-.....+..-.
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~d-----------------------------e~~~q~~GvN~mdkt~~i~~t~ 68 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYD-----------------------------EEYTQTLGVNFMDKTVSIRGTD 68 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhH-----------------------------HHHHHHhCccceeeEEEecceE
Confidence 34689999999999999999888742210 0112234555544555566667
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC--CcEEEEEeeccccc-c
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQ-Y 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~--ppiIVVvNKiDlv~-~ 420 (519)
..+.|||..|+++|..+..-+...+-+++|++|.++..+ + ...++..++++..+. .| |+|++|.|+.- -
T Consensus 69 IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T------L-nSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~l 140 (205)
T KOG1673|consen 69 ISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST------L-NSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDL 140 (205)
T ss_pred EEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH------H-HHHHHHHHHHhccCCccce-EEeccchHhhhcC
Confidence 789999999999999999888899999999999998743 2 334455566666543 12 88999999642 2
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
+.+..+.|..+.+.+.+..+ .+.|++|+-+..|+.++|.-
T Consensus 141 p~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~KIFK~ 180 (205)
T KOG1673|consen 141 PPELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQKIFKI 180 (205)
T ss_pred CHHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHHHHHH
Confidence 34555667777777777665 46799999999999999864
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.97 E-value=1.2e-09 Score=108.51 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=98.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccc-cccchhhhhHHHHhhCCCccchhhcccccccccccceEEEE-EEE----
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRI-TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVA---- 337 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i-~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~-~~~---- 337 (519)
.+...|+|.|.||||||||+++|....... .+..+......+...|..-..-...|..+.. .+++.+-- ...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~--d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSR--DPGVFIRSMATRGSLG 104 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHT--STTEEEEEE---SSHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCC--CCCEEEeecCcCCCCC
Confidence 356789999999999999999997543321 1223334444444444433332333332221 22332211 100
Q ss_pred -----------eecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC
Q 010046 338 -----------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 338 -----------~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p 406 (519)
.++..++.++|+.|.|.-.---. -...+|.+++|+-...| .+++ ....-+++++
T Consensus 105 Gls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~G---D~iQ---~~KaGimEia------ 169 (266)
T PF03308_consen 105 GLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLG---DEIQ---AIKAGIMEIA------ 169 (266)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTC---CCCC---TB-TTHHHH-------
T ss_pred CccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCc---cHHH---HHhhhhhhhc------
Confidence 12335788999999994432222 23459999999998877 2333 3333333322
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC--CCCceEEEeccccCCCcccccccccc
Q 010046 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~--~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
=|+|+||.|+..+ +....+++..+....-. ....+++.+||.+|+||.++.+.+..
T Consensus 170 -Di~vVNKaD~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 170 -DIFVVNKADRPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp -SEEEEE--SHHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred -cEEEEeCCChHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 2889999996643 33445555555443211 12358999999999999999876643
No 310
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.8e-09 Score=111.70 Aligned_cols=132 Identities=29% Similarity=0.472 Sum_probs=103.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee---
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 339 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~--- 339 (519)
+....++-+|.|++.|||||...|....+.+.... .|. +-++|....++++|+|+....+.+
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aGe-----~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AGE-----TRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cCC-----ccccccccchhhcceEeeeeeeeehhh
Confidence 44567899999999999999999986655443221 122 224677788889999986544322
Q ss_pred -------------cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC
Q 010046 340 -------------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (519)
Q Consensus 340 -------------~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p 406 (519)
+.++..+.|||.|||.+|..+...+++..|.+++|||.-.| +--|++..+.++....++
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G--------vCVQTETVLrQA~~ERIk 152 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--------VCVQTETVLRQAIAERIK 152 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc--------eEechHHHHHHHHHhhcc
Confidence 23567899999999999999999999999999999999988 456788888888777777
Q ss_pred cEEEEEeecccc
Q 010046 407 QLIVAVNKMDAV 418 (519)
Q Consensus 407 piIVVvNKiDlv 418 (519)
| ++++||+|..
T Consensus 153 P-vlv~NK~DRA 163 (842)
T KOG0469|consen 153 P-VLVMNKMDRA 163 (842)
T ss_pred c-eEEeehhhHH
Confidence 6 7899999953
No 311
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.3e-08 Score=108.84 Aligned_cols=148 Identities=26% Similarity=0.333 Sum_probs=109.0
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010046 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
.+..+++-|+|||++|.||||||..|+.... ..+..+...-+|. +.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~t----------------------------k~ti~~i~GPiTv------vs 109 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----------------------------KQTIDEIRGPITV------VS 109 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHH----------------------------HhhhhccCCceEE------ee
Confidence 4456778899999999999999999982210 1111122233443 44
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
.+..+++|+.+| .-...|+.....+|+|+|+||++-| +...+.+++.++...+.|+++-|++..|+..
T Consensus 110 gK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG--------fEMETmEFLnil~~HGmPrvlgV~ThlDlfk- 177 (1077)
T COG5192 110 GKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG--------FEMETMEFLNILISHGMPRVLGVVTHLDLFK- 177 (1077)
T ss_pred cceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC--------ceehHHHHHHHHhhcCCCceEEEEeeccccc-
Confidence 567899999999 3455667778889999999999988 6678999999999999999999999999986
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccC
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG 456 (519)
++..+..++++++..+..--+. .+.+|.+|...+
T Consensus 178 ~~stLr~~KKrlkhRfWtEiyq--GaKlFylsgV~n 211 (1077)
T COG5192 178 NPSTLRSIKKRLKHRFWTEIYQ--GAKLFYLSGVEN 211 (1077)
T ss_pred ChHHHHHHHHHHhhhHHHHHcC--CceEEEeccccc
Confidence 4566777888777666543332 245677776543
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.92 E-value=4.2e-09 Score=104.78 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=48.4
Q ss_pred CeEEEEEeCCCCCc-------------chhhhhhcccc-CCeEEEEeecCCCcccccccchhHHH-HHHHHHHHHhCCCc
Q 010046 343 NYHVVVLDSPGHKD-------------FVPNMISGATQ-SDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (519)
Q Consensus 343 ~~~l~LiDTPG~~~-------------f~~~~~~~l~~-aD~vIlVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~~pp 407 (519)
...|+|+||||... ...++..++.. .+++++|+|+..+ +..+. .++++.+...+.+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d--------~~~~d~l~ia~~ld~~~~r- 194 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD--------LANSDALKLAKEVDPQGER- 194 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC--------CCchhHHHHHHHHHHcCCc-
Confidence 35899999999642 12234556664 5699999999865 22333 4666666666666
Q ss_pred EEEEEeecccccc
Q 010046 408 LIVAVNKMDAVQY 420 (519)
Q Consensus 408 iIVVvNKiDlv~~ 420 (519)
+|+|+||+|....
T Consensus 195 ti~ViTK~D~~~~ 207 (240)
T smart00053 195 TIGVITKLDLMDE 207 (240)
T ss_pred EEEEEECCCCCCc
Confidence 9999999999853
No 313
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.91 E-value=1.1e-09 Score=110.41 Aligned_cols=190 Identities=18% Similarity=0.216 Sum_probs=106.3
Q ss_pred CCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccc-cccchhhhhHHHHhhCCCccchhhcccccccccccceEEEE
Q 010046 256 LPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRI-TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV 334 (519)
Q Consensus 256 ~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i-~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~ 334 (519)
+........+...|+|.|.||||||||+.+|......- .+..+......+..+|..-..-.+.|......+ ++.+-.
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~--~vFiRs 118 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDP--GVFIRS 118 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCC--CeEEee
Confidence 33444456677899999999999999999997443211 111222333333333433333333333332211 111100
Q ss_pred ----------------EEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHH
Q 010046 335 ----------------AVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ 398 (519)
Q Consensus 335 ----------------~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ 398 (519)
...-++-.++.++||.|-|.-.--.. -...+|.+++|.=...| +.++....-++.
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~G------D~~Q~iK~GimE 189 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAG------DDLQGIKAGIME 189 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCC------cHHHHHHhhhhh
Confidence 00112345788999999994332221 12348999999877766 224455555544
Q ss_pred HHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHH---HHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 399 LIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 399 ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~---l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+. =|+|+||.|..++. ....+....+... -...+| ..+++.+||.+|+|+.++.+.+.
T Consensus 190 ia-------Di~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W---~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 190 IA-------DIIVINKADRKGAE-KAARELRSALDLLREVWRENGW---RPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred hh-------heeeEeccChhhHH-HHHHHHHHHHHhhcccccccCC---CCceeEeeeccCCCHHHHHHHHH
Confidence 43 27899999966431 1122222222222 112233 45789999999999999987654
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=2.3e-09 Score=104.04 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC-e
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-~ 344 (519)
..||.++|.+|+|||++=..+.+.....+ -+..|-|+++...++.+-+ .
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D------------------------------~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARD------------------------------TRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhh------------------------------hhccCCcceeeehhhhhhhhh
Confidence 46799999999999998877763221111 1125667777666665544 6
Q ss_pred EEEEEeCCCCCcchhhhhh-----ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 345 HVVVLDSPGHKDFVPNMIS-----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~-----~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
-+.+||..|++.|...... -++.++++|+|+|+...+++.++..++...+.+++.... .++++.+.|+|++.
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~---AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE---AKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc---ceEEEEEeechhcc
Confidence 7889999999988877655 356699999999999887777776555444444433322 24899999999985
Q ss_pred ccc--hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccC
Q 010046 420 YSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (519)
Q Consensus 420 ~~~--e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG 456 (519)
.+. ..+++-.+.+..+-+.++ +.++|+|....
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~-----~~~f~TsiwDe 164 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE-----CKCFPTSIWDE 164 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc-----ccccccchhhH
Confidence 322 223333333333322222 45677776643
No 315
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.88 E-value=1.4e-08 Score=103.46 Aligned_cols=145 Identities=18% Similarity=0.273 Sum_probs=82.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee--cCCC
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKN 343 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~--~~~~ 343 (519)
.++|.|+|.+|+|||||||.|+.......... .............+......+ ....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 47899999999999999999996433221100 000000111122222222222 2234
Q ss_pred eEEEEEeCCCCCcchhh------hhhc---------------------cccCCeEEEEeecCCCcccccccchhHHHHHH
Q 010046 344 YHVVVLDSPGHKDFVPN------MISG---------------------ATQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~------~~~~---------------------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~ 396 (519)
..++||||||..+.... +..+ =..+|+|||+|..+.. .+.....+.
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-------~L~~~Di~~ 135 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-------GLKPLDIEF 135 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-------SS-HHHHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-------cchHHHHHH
Confidence 57899999995431111 0000 0228999999998632 155566665
Q ss_pred HHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC
Q 010046 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (519)
Q Consensus 397 l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~ 442 (519)
++.+... + ++|-|+.|.|.+ ..+.+..+++.+...++..++.
T Consensus 136 mk~Ls~~-v-NvIPvIaKaD~l--t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 136 MKRLSKR-V-NVIPVIAKADTL--TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHTTT-S-EEEEEESTGGGS---HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhccc-c-cEEeEEeccccc--CHHHHHHHHHHHHHHHHHcCce
Confidence 5555443 3 489999999998 6788889999999999988764
No 316
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.87 E-value=1.5e-08 Score=106.29 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEe-------e
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY-------F 339 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~-------~ 339 (519)
++|+|||.||||||||+|+|++....+... ..++.++..|+..-.. .. +
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny-----------------------pftTi~p~~G~~~v~d-~r~~~l~~~~ 58 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY-----------------------PFCTIEPNVGVVPVPD-PRLDKLAEIV 58 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc-----------------------ccccccceEEEEEecc-ccchhhHHhc
Confidence 679999999999999999999643211110 0011111111110000 00 0
Q ss_pred ---cCCCeEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecC
Q 010046 340 ---DSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 340 ---~~~~~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas 378 (519)
..-...+.|+|+||... ....++..++.+|++|+|||+.
T Consensus 59 ~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 59 KPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 00113689999999432 3445677789999999999985
No 317
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.1e-08 Score=94.71 Aligned_cols=159 Identities=18% Similarity=0.073 Sum_probs=98.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.-+++++|--|||||||++.|-...-..-.++.| .| ...+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlH------------------------------PT----SE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLH------------------------------PT----SEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcC------------------------------CC----hHHheecC
Confidence 455689999999999999999986322111111111 00 11133466
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH---HhCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~~ppiIVVvNKiDlv~~ 420 (519)
..++.+|..||..-...+..++..+|++|++||+.... .+.+...+.-.++. -..+| ++|..||+|...+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e------r~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE------RFAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH------HhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 78999999999999999999999999999999998652 23333333332222 23455 8999999999865
Q ss_pred cchhHHHHHHHHHHHHHhcC------CCCCCceEEEeccccCCCccccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCG------FKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g------~~~~~i~~IpvSA~tGegI~el~ 463 (519)
..+.--.....+.+.....+ ....-+.++.||...+.|..+.|
T Consensus 137 ~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~f 185 (193)
T KOG0077|consen 137 ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGF 185 (193)
T ss_pred ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceee
Confidence 43221112222222222111 11122457778888888866664
No 318
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.84 E-value=1.7e-09 Score=103.06 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=61.6
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||.+.|. .... .+.--..++-|+|||+..|.- ..........+ -=++|+||+|++.+-..
T Consensus 97 ~Dll~iEs~GN--L~~~-~sp~L~d~~~v~VidvteGe~-~P~K~gP~i~~------------aDllVInK~DLa~~v~~ 160 (202)
T COG0378 97 LDLLFIESVGN--LVCP-FSPDLGDHLRVVVIDVTEGED-IPRKGGPGIFK------------ADLLVINKTDLAPYVGA 160 (202)
T ss_pred CCEEEEecCcc--eecc-cCcchhhceEEEEEECCCCCC-CcccCCCceeE------------eeEEEEehHHhHHHhCc
Confidence 67899999992 1111 111122338999999998831 01100000100 13799999999965444
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
.++.+.+..+++ .++.+||++|+++|+|++++..
T Consensus 161 dlevm~~da~~~-------np~~~ii~~n~ktg~G~~~~~~ 194 (202)
T COG0378 161 DLEVMARDAKEV-------NPEAPIIFTNLKTGEGLDEWLR 194 (202)
T ss_pred cHHHHHHHHHHh-------CCCCCEEEEeCCCCcCHHHHHH
Confidence 555555555555 2567899999999999999854
No 319
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.83 E-value=3e-08 Score=104.40 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=82.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEE---------
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV--------- 334 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~--------- 334 (519)
.-.+.|+|+|+.++|||||||+|.+......-... +.+.... |.. .+...|.|+..
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~--~~k~Ra~------------DEL-pqs~~GktItTTePkfvP~k 79 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNE--YDKERAQ------------DEL-PQSAAGKTIMTTEPKFVPNE 79 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccch--hHHhHHH------------hcc-CcCCCCCCcccCCCccccCc
Confidence 34678999999999999999999976443222110 1111111 111 11123322211
Q ss_pred --EEEeecCCCeEEEEEeCCCCCc--------chh-----------------h----hhhccc-cCCeEEEEe-ecCCCc
Q 010046 335 --AVAYFDSKNYHVVVLDSPGHKD--------FVP-----------------N----MISGAT-QSDAAILVI-DASVGS 381 (519)
Q Consensus 335 --~~~~~~~~~~~l~LiDTPG~~~--------f~~-----------------~----~~~~l~-~aD~vIlVV-Das~g~ 381 (519)
.....+.-..++.|+||+|..+ -.. . +...+. .+|+.|+|. |.+-
T Consensus 80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi-- 157 (492)
T TIGR02836 80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTI-- 157 (492)
T ss_pred ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCc--
Confidence 1112233457899999999322 110 0 222344 599999998 7762
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 382 FEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 382 ~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
++..++.+.....+.+..++..++| +|+|+||+|-
T Consensus 158 ~dI~Re~y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 158 TDIPREDYVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred cccccccchHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 2344455667788888889999988 9999999993
No 320
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.83 E-value=1.4e-10 Score=109.00 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=106.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-Ce
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NY 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-~~ 344 (519)
..++.|+|.-++|||+++.+.++....-.- .. ..|+.+...+...+.. -.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~y----------RA-------------------tIgvdfalkVl~wdd~t~v 75 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHY----------RA-------------------TIGVDFALKVLQWDDKTIV 75 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHH----------HH-------------------HHhHHHHHHHhccChHHHH
Confidence 467999999999999999999854321100 00 0111111111112111 24
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC-----cEEEEEeeccccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-----QLIVAVNKMDAVQ 419 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p-----piIVVvNKiDlv~ 419 (519)
++.|||..||++|..++.-+++.+.++++|+|+++..++. ...++...+-....+| |+|+..||+|+-.
T Consensus 76 RlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe------~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 76 RLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFE------PVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred HHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccccc------HHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 6789999999999999999999999999999999874432 3333333333333222 4899999999864
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
. ...+.-.++.++.+..|+. .++.+||+.+.|+.|+.+.
T Consensus 150 ~---a~~~~~~~~d~f~kengf~----gwtets~Kenkni~Ea~r~ 188 (229)
T KOG4423|consen 150 S---AKNEATRQFDNFKKENGFE----GWTETSAKENKNIPEAQRE 188 (229)
T ss_pred H---hhhhhHHHHHHHHhccCcc----ceeeeccccccChhHHHHH
Confidence 2 2233346777888888875 4599999999999998654
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.79 E-value=1.2e-08 Score=103.90 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....+.||++.|.-.....+ --..+.-+.|+++..+.. ... .+-..+... -++|+||+|++.+.
T Consensus 183 ~~~d~liIEnvGnLvcPa~f---dlge~~~v~vlsV~eg~d--------kpl----Kyp~~f~~A-DIVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASF---DLGEKHKVAVLSVTEGED--------KPL----KYPHMFAAA-SLMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccCCCcc---chhhceeEEEEECccccc--------cch----hccchhhcC-cEEEEEhHHcCccc
Confidence 44578899999952221111 111344567888886621 001 111112333 58999999998532
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
...++.+.+.++.. . +..++|++||++|+|++++.+
T Consensus 247 ~~dle~~~~~lr~l----n---p~a~I~~vSA~tGeGld~L~~ 282 (290)
T PRK10463 247 NFDVEKCIACAREV----N---PEIEIILISATSGEGMDQWLN 282 (290)
T ss_pred HHHHHHHHHHHHhh----C---CCCcEEEEECCCCCCHHHHHH
Confidence 33344444444333 2 356889999999999999854
No 322
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.79 E-value=5e-08 Score=89.24 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=96.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEE-EEEEEeecC-
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFDS- 341 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~-~~~~~~~~~- 341 (519)
.+..+|+++|.-++|||+++..|++-...+.... ..|+ ++....++.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~-------------------------------~pTiEDiY~~svet~ 55 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL-------------------------------HPTIEDIYVASVETD 55 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCcc-------------------------------ccchhhheeEeeecC
Confidence 4567899999999999999999996443221111 0011 111222222
Q ss_pred --CCeEEEEEeCCCCCcchhh-hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 342 --KNYHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 342 --~~~~l~LiDTPG~~~f~~~-~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
..-.+.|.||.|....... -..++.-+|+++||++..... +|+.+....+++-..-....+| |+++.||.|+.
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~ 131 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRA 131 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HHHHHHHHHHHHhhcccccccc-EEEEechhhcc
Confidence 2246889999997777433 445667799999999999773 3333333344443333333455 99999999986
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.. .+.+ ........+. ..+..+.++|.....+.+.|..
T Consensus 132 ~p--~~vd--~d~A~~Wa~r-----Ekvkl~eVta~dR~sL~epf~~ 169 (198)
T KOG3883|consen 132 EP--REVD--MDVAQIWAKR-----EKVKLWEVTAMDRPSLYEPFTY 169 (198)
T ss_pred cc--hhcC--HHHHHHHHhh-----hheeEEEEEeccchhhhhHHHH
Confidence 32 1111 1111111111 2356799999999999988764
No 323
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=101.01 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=102.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++++++|.+|+|||+|||.++...... . ......|-|..+.... -
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~-------------~---------------t~k~K~g~Tq~in~f~---v 181 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIA-------------D---------------TSKSKNGKTQAINHFH---V 181 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhh-------------h---------------hcCCCCccceeeeeee---c
Confidence 4556899999999999999999998321100 0 0111345555544333 3
Q ss_pred CeEEEEEeCCCC----------Ccchhhhhhcc---ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE
Q 010046 343 NYHVVVLDSPGH----------KDFVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (519)
Q Consensus 343 ~~~l~LiDTPG~----------~~f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI 409 (519)
+..+.++|.||. .++...+..|+ ..--.+++++|++-+ ++..+...++++.+.++| +.
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--------i~~~D~~~i~~~ge~~VP-~t 252 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--------IQPTDNPEIAWLGENNVP-MT 252 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--------CCCCChHHHHHHhhcCCC-eE
Confidence 468999999991 22333333333 335567888999977 566777888899999999 99
Q ss_pred EEEeecccccccc----hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 410 VAVNKMDAVQYSK----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 410 VVvNKiDlv~~~~----e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
+|+||||....-. .....++..+..+.+.+- ....+|+.+|+.++.|+++|.-
T Consensus 253 ~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f--~~~~Pw~~~Ssvt~~Grd~Ll~ 309 (320)
T KOG2486|consen 253 SVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF--LVDLPWIYVSSVTSLGRDLLLL 309 (320)
T ss_pred EeeehhhhhhhccccccCccccceeehhhccccce--eccCCceeeecccccCceeeee
Confidence 9999999764211 111122222333322221 2335788999999999999853
No 324
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.71 E-value=1.4e-08 Score=103.02 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CCCe
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNY 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~~~ 344 (519)
...|++||.+|+||||||++|.........+-+. |.+....... -.+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA-------------------------------TLDpT~h~a~Lpsg~ 226 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA-------------------------------TLDPTLHSAHLPSGN 226 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhhe-------------------------------eccchhhhccCCCCc
Confidence 4569999999999999999998432211111110 1111111111 1455
Q ss_pred EEEEEeCCCCCcch--------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCc------EEE
Q 010046 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ------LIV 410 (519)
Q Consensus 345 ~l~LiDTPG~~~f~--------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~pp------iIV 410 (519)
.+.|.||-|+..-. ..++..+..+|++|.|+|.+++. ...+....+..+...++++ +|=
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~-------ae~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPN-------AEEQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCcc-------HHHHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 78899999954321 22344566799999999999984 5567778888888888863 567
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010046 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
|-||+|......+. . ++ ..+++||++|+|+.++..+
T Consensus 300 VdnkiD~e~~~~e~------------E------~n-~~v~isaltgdgl~el~~a 335 (410)
T KOG0410|consen 300 VDNKIDYEEDEVEE------------E------KN-LDVGISALTGDGLEELLKA 335 (410)
T ss_pred hccccccccccCcc------------c------cC-CccccccccCccHHHHHHH
Confidence 78888876321110 0 11 1499999999999998654
No 325
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.70 E-value=8.5e-08 Score=106.00 Aligned_cols=121 Identities=18% Similarity=0.128 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|+|||||+|.|++........ ...++|. .........+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss-----------------------------~~~~TTr-~~ei~~~idG~~ 167 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDA-----------------------------FGMGTTS-VQEIEGLVQGVK 167 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccC-----------------------------CCCCceE-EEEEEEEECCce
Confidence 4789999999999999999999653221110 0122222 112222335678
Q ss_pred EEEEeCCCCCcch------hh----hhhccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010046 346 VVVLDSPGHKDFV------PN----MISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 346 l~LiDTPG~~~f~------~~----~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
+.||||||..+.. .. +..++. .+|++|||+....... +.+ -....+.+..++-..-..++|||+|
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~--D~e-D~~aLr~Iq~lFG~~Iwk~tIVVFT 244 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR--DSN-DLPLLRTITDVLGPSIWFNAIVTLT 244 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cHH-HHHHHHHHHHHhCHHhHcCEEEEEe
Confidence 9999999965421 12 222323 4899999987653211 000 0011222222222212346999999
Q ss_pred eccccc
Q 010046 414 KMDAVQ 419 (519)
Q Consensus 414 KiDlv~ 419 (519)
..|.+.
T Consensus 245 hgD~lp 250 (763)
T TIGR00993 245 HAASAP 250 (763)
T ss_pred CCccCC
Confidence 999885
No 326
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.1e-07 Score=104.20 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=66.5
Q ss_pred eEEEEEeCCCC---CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010046 344 YHVVVLDSPGH---KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~---~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..++++|.||. ..+..........+|++|||+.+.+. +....++++..... +.|.|+|+.||+|....
T Consensus 206 nDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--------lt~sek~Ff~~vs~-~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--------LTLSEKQFFHKVSE-EKPNIFILNNKWDASAS 276 (749)
T ss_pred ccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--------hHHHHHHHHHHhhc-cCCcEEEEechhhhhcc
Confidence 37899999994 44666677778889999999999865 33333333333332 36779999999998865
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEecccc
Q 010046 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~t 455 (519)
.++-.+.++.++. -|.-.......-.+++|||+.
T Consensus 277 e~ec~e~V~~Qi~-eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 277 EPECKEDVLKQIH-ELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cHHHHHHHHHHHH-hcCcccHhhhcCeeEEEeccc
Confidence 4444555555543 222223333344678999663
No 327
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.3e-07 Score=96.48 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee------
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF------ 339 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~------ 339 (519)
.++++|||.||+|||||+|+|+.....+- +|.| .+.+++.|+..-.. ..+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~a-----------------NYPF------~TIePN~Giv~v~d-~rl~~L~~~ 57 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIA-----------------NYPF------CTIEPNVGVVYVPD-CRLDELAEI 57 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCcccc-----------------CCCc------ccccCCeeEEecCc-hHHHHHHHh
Confidence 36899999999999999999985432221 1212 22233333322111 000
Q ss_pred -c----CCCeEEEEEeCCCC-------CcchhhhhhccccCCeEEEEeecC
Q 010046 340 -D----SKNYHVVVLDSPGH-------KDFVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 340 -~----~~~~~l~LiDTPG~-------~~f~~~~~~~l~~aD~vIlVVDas 378 (519)
. ..-..+.|+|.+|. +-....++..++.+|+++.||++.
T Consensus 58 ~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 58 VKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 0 11135789999993 447788899999999999999998
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.48 E-value=1.4e-07 Score=95.77 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecC
Q 010046 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 345 ~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas 378 (519)
.+.|+|+||... ....++..++.+|++++|||+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 589999999432 4445677788999999999975
No 329
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=1.1e-06 Score=86.09 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccce-EEEEEEEeecCC--
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSK-- 342 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~Gi-T~~~~~~~~~~~-- 342 (519)
.++|.|||.+|.|||||+|.|......-.. ......++.+.+ .+......+..+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s-----------------------~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSS-----------------------SSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhcc-----------------------CCCcccCcccceEEEEeeeeeeeecce
Confidence 578999999999999999999843211000 011111222211 222222223333
Q ss_pred CeEEEEEeCCCCCcchh--------------hhhhcc--------------ccCCeEEEEeecCCCcccccccchhHHHH
Q 010046 343 NYHVVVLDSPGHKDFVP--------------NMISGA--------------TQSDAAILVIDASVGSFEVGMNTAKGLTR 394 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~--------------~~~~~l--------------~~aD~vIlVVDas~g~~e~~~~~l~~~~~ 394 (519)
..++++|||||.-++.. ....|+ ..+++|+|.|..+.. .+.....
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-------sLrplDi 175 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-------SLRPLDI 175 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-------ccCcccH
Confidence 35788999999544211 111111 128899999988743 2666777
Q ss_pred HHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCC
Q 010046 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 395 e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~ 441 (519)
+.++.+.+. -.+|-|+-|.|.+ .-+...+.++++++-+...++
T Consensus 176 eflkrLt~v--vNvvPVIakaDtl--TleEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 176 EFLKRLTEV--VNVVPVIAKADTL--TLEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHhhh--heeeeeEeecccc--cHHHHHHHHHHHHHHHHhcCc
Confidence 776655443 2377789999987 445556677888888877775
No 330
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.47 E-value=1.5e-06 Score=85.73 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=76.9
Q ss_pred CCCCCCCcCCcchhhhhhccccccCCCCccccccccccccCCCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHh
Q 010046 207 VDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRL 286 (519)
Q Consensus 207 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~s~~v~~~~~~~~~~~~~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrL 286 (519)
++....+-|-|-|.+.|.+++..--.|. ..++-+.+-+. ..+.-..+|++||.|.+|||||+..+
T Consensus 18 QKNKaTEyHLGlLKaKlAkyR~qLlep~----------~~s~~kg~GFe-----V~KsGdaRValIGfPSVGKStlLs~i 82 (364)
T KOG1486|consen 18 QKNKATEYHLGLLKAKLAKYRQQLLEPT----------KGSSGKGEGFE-----VLKSGDARVALIGFPSVGKSTLLSKI 82 (364)
T ss_pred hhccchhHhHHHHHHHHHHHHHHhCCCC----------CCCCCCCCCee-----eeccCCeEEEEecCCCccHHHHHHHh
Confidence 4445556677777777777754321111 11111111110 01223468999999999999999999
Q ss_pred hhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEEEeCCCCCc-------chh
Q 010046 287 LFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSPGHKD-------FVP 359 (519)
Q Consensus 287 l~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~LiDTPG~~~-------f~~ 359 (519)
....... .++ .-+|.......+.+++..++++|.||... -..
T Consensus 83 T~T~Sea-----------------A~y--------------eFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGR 131 (364)
T KOG1486|consen 83 TSTHSEA-----------------ASY--------------EFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGR 131 (364)
T ss_pred hcchhhh-----------------hce--------------eeeEEEeecceEEecCceEEEecCcccccccccCCCCCc
Confidence 7321100 001 11223333344667888999999999432 345
Q ss_pred hhhhccccCCeEEEEeecCCC
Q 010046 360 NMISGATQSDAAILVIDASVG 380 (519)
Q Consensus 360 ~~~~~l~~aD~vIlVVDas~g 380 (519)
..+..++.+|++++|+|++..
T Consensus 132 QviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 132 QVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eEEEEeecccEEEEEecCCcc
Confidence 566777889999999999965
No 331
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.46 E-value=1.9e-06 Score=89.31 Aligned_cols=146 Identities=21% Similarity=0.310 Sum_probs=92.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccc-cccceEEEEEEEeecC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVAYFDS 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e-~~~GiT~~~~~~~~~~ 341 (519)
+.-.++|.++|..|.|||||+|.|++... .... ..+..... ..+++.+......+..
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e 77 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSL-VDET---------------------EIDDIRAEGTSPTLEIKITKAELEE 77 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhc-cCCC---------------------CccCcccccCCcceEEEeeeeeeec
Confidence 34578999999999999999999996511 0000 00111111 2234444444444444
Q ss_pred CC--eEEEEEeCCCCCcchhhh--------------hhcc--------------ccCCeEEEEeecCCCcccccccchhH
Q 010046 342 KN--YHVVVLDSPGHKDFVPNM--------------ISGA--------------TQSDAAILVIDASVGSFEVGMNTAKG 391 (519)
Q Consensus 342 ~~--~~l~LiDTPG~~~f~~~~--------------~~~l--------------~~aD~vIlVVDas~g~~e~~~~~l~~ 391 (519)
++ ..+++|||||.-++.... ..++ ..+|+|+|.+-.+.. .+..
T Consensus 78 ~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-------~l~~ 150 (373)
T COG5019 78 DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-------GLKP 150 (373)
T ss_pred CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-------CCCH
Confidence 43 578899999965532211 1111 128999999987632 2556
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCC
Q 010046 392 LTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 392 ~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~ 441 (519)
+..+.+.-+... + .+|=|+-|.|.. ..+.+...++.+.+.+....+
T Consensus 151 ~DIe~Mk~ls~~-v-NlIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 151 LDIEAMKRLSKR-V-NLIPVIAKADTL--TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHHHhcc-c-CeeeeeeccccC--CHHHHHHHHHHHHHHHHHhCC
Confidence 666666555442 2 378899999998 677888899999999888775
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=5.7e-07 Score=83.25 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=39.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+++|.+|+|||||+|+|++..... ....+|.|........ ...
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~~ 148 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK------------------------------VAPIPGETKVWQYITL---MKR 148 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee------------------------------eCCCCCeeEeEEEEEc---CCC
Confidence 4679999999999999999998543222 2223566665544333 235
Q ss_pred EEEEeCCCC
Q 010046 346 VVVLDSPGH 354 (519)
Q Consensus 346 l~LiDTPG~ 354 (519)
+.|+||||.
T Consensus 149 ~~liDtPGi 157 (157)
T cd01858 149 IYLIDCPGV 157 (157)
T ss_pred EEEEECcCC
Confidence 899999993
No 333
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.38 E-value=9e-07 Score=87.63 Aligned_cols=84 Identities=23% Similarity=0.250 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.-+|+++|.|.+|||||+..|++....+.. ..+.|.........+++-+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vas-------------------------------yefttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAA-------------------------------YEFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccc-------------------------------ccceeEEEecceEeccccc
Confidence 357999999999999999999853221110 1122333333345567889
Q ss_pred EEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCC
Q 010046 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (519)
Q Consensus 346 l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (519)
+.|.|.||..+ -....+..++-|.++++|+|+..+
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 99999999533 345566677889999999999854
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.32 E-value=3.8e-06 Score=87.19 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCCCCcchhh----hhh---c-----cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE
Q 010046 342 KNYHVVVLDSPGHKDFVPN----MIS---G-----ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~----~~~---~-----l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI 409 (519)
.++.++||||||....... +.. . -..++-+++|+|++.+ . ....+...+....+. .-
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--------~-~~~~~a~~f~~~~~~--~g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--------Q-NALSQAKAFHEAVGL--TG 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--------h-HHHHHHHHHHhhCCC--CE
Confidence 5678999999995432221 111 1 1347789999999966 1 122223333333332 46
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010046 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
+|+||+|.... .-.+...+ ...+ +|+.+++ +|++++++.
T Consensus 264 iIlTKlD~t~~----~G~~l~~~----~~~~-----~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 264 IILTKLDGTAK----GGVVFAIA----DELG-----IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEEECCCCCCC----ccHHHHHH----HHHC-----CCEEEEe--CCCChhhCc
Confidence 89999996532 12222222 2223 4667777 889987763
No 335
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=6.2e-06 Score=86.04 Aligned_cols=145 Identities=20% Similarity=0.290 Sum_probs=87.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC--
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-- 342 (519)
-.+++.++|..|.|||||||.|+.....-. +. + ..........+.+......+.-+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-~~---------------~------~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGN-RE---------------V------PGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCC-cc---------------c------CCcccCccccceeeeeeeeecCCCe
Confidence 358899999999999999999985411100 00 0 00111111122222222233333
Q ss_pred CeEEEEEeCCCCCcchhhh--------------hh-----------ccc--cCCeEEEEeecCCCcccccccchhHHHHH
Q 010046 343 NYHVVVLDSPGHKDFVPNM--------------IS-----------GAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~--------------~~-----------~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (519)
...++++||||..++.... .. .+. .+++|+|.|..+.. .+.....+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-------gL~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-------GLKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-------CCcHhhHH
Confidence 3578899999954422111 11 112 48999999987632 15566666
Q ss_pred HHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC
Q 010046 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~ 442 (519)
.+.-+.. .+. +|=|+-|.|.+ ..+.+...++.+.+.+...++.
T Consensus 151 ~Mk~l~~-~vN-iIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI~ 193 (366)
T KOG2655|consen 151 FMKKLSK-KVN-LIPVIAKADTL--TKDELNQFKKRIRQDIEEHNIK 193 (366)
T ss_pred HHHHHhc-ccc-ccceeeccccC--CHHHHHHHHHHHHHHHHHcCcc
Confidence 6655543 233 77899999998 6677788888888888887653
No 336
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.28 E-value=1.1e-06 Score=83.27 Aligned_cols=58 Identities=29% Similarity=0.373 Sum_probs=42.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+|+|++.... .....+|+|.......+.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~~--- 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHLD--- 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEeC---
Confidence 34578999999999999999999954321 122346777765555443
Q ss_pred eEEEEEeCCCC
Q 010046 344 YHVVVLDSPGH 354 (519)
Q Consensus 344 ~~l~LiDTPG~ 354 (519)
..+.|+||||.
T Consensus 162 ~~~~l~DtPGi 172 (172)
T cd04178 162 KKVKLLDSPGI 172 (172)
T ss_pred CCEEEEECcCC
Confidence 36899999994
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=5.1e-06 Score=86.72 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCeEEEEEeCCCCCcchhhhhhc------cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.++.++||||||........+.. ...+|.++||+|+..+ .........+....+.. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC--EEEEeee
Confidence 34679999999955432222222 2358999999999865 11222222222334443 6889999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010046 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
|....-... ...+.. . ++|+.+++ +|++++++.
T Consensus 290 D~~~~~G~~----ls~~~~----~-----~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 290 DADAKGGAA----LSIAYV----I-----GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred cCCCCccHH----HHHHHH----H-----CcCEEEEe--CCCChhhcc
Confidence 986432222 222222 2 24667776 799997763
No 338
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=5.3e-06 Score=82.93 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=62.8
Q ss_pred CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHH
Q 010046 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (519)
Q Consensus 355 ~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~ 434 (519)
++|......+++.+|.+++|+|+..+.+ + +....++ +..+...++| +|||+||+||... .... .+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~--s---~~~l~r~-l~~~~~~~i~-~vIV~NK~DL~~~--~~~~--~~~~-~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPEL--S---LNQLDRF-LVVAEAQNIE-PIIVLNKIDLLDD--EDME--KEQL-D 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCC--C---HHHHHHH-HHHHHHCCCC-EEEEEECcccCCC--HHHH--HHHH-H
Confidence 4555556668899999999999986521 1 2233333 3344555666 8999999999732 2111 1222 2
Q ss_pred HHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 435 FLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 435 ~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.+...+ .+++++||++|+||.++|+.+.
T Consensus 92 ~~~~~g-----~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 92 IYRNIG-----YQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred HHHHCC-----CeEEEEecCCchhHHHHHhhhc
Confidence 233344 4789999999999999997654
No 339
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.18 E-value=2.3e-06 Score=78.82 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=54.4
Q ss_pred hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCC
Q 010046 362 ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 362 ~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~ 441 (519)
...+..+|++|+|+|+..+.. ....++..++...+.| +|+|+||+|+.. ...... +..+....
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~--------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~----~~~~~~~~-- 69 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPEL--------TRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEK----WKSIKESE-- 69 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcc--------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHH----HHHHHHhC--
Confidence 334456999999999986521 1223344444445555 899999999863 222211 11222222
Q ss_pred CCCCceEEEeccccCCCccccccccc
Q 010046 442 KDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 442 ~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
..+++++||++|.|+.++++.+.
T Consensus 70 ---~~~~~~iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 70 ---GIPVVYVSAKERLGTKILRRTIK 92 (156)
T ss_pred ---CCcEEEEEccccccHHHHHHHHH
Confidence 24679999999999999887653
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.17 E-value=2.5e-06 Score=78.96 Aligned_cols=88 Identities=15% Similarity=0.001 Sum_probs=55.0
Q ss_pred hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccccchhHHHHHHHHHHHHHhc
Q 010046 361 MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC 439 (519)
Q Consensus 361 ~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~ 439 (519)
.+..+..+|++++|+|+..+. ......+..++.... ..|+|+|+||+|+.. .+.+..+. ..+ ...
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~--------~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~--~~~~~~~~---~~~-~~~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM--------GTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP--TWVTARWV---KIL-SKE 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc--------cccCHHHHHHHHhccCCCCEEEEEEchhcCC--HHHHHHHH---HHH-hcC
Confidence 356788899999999998762 122334444444332 134899999999973 22222222 222 111
Q ss_pred CCCCCCceEEEeccccCCCcccccccc
Q 010046 440 GFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 440 g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+ ...++++||+++.|+.++.+.+
T Consensus 68 -~---~~~~~~iSa~~~~~~~~L~~~l 90 (157)
T cd01858 68 -Y---PTIAFHASINNPFGKGSLIQLL 90 (157)
T ss_pred -C---cEEEEEeeccccccHHHHHHHH
Confidence 1 1235899999999999887654
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.16 E-value=1.3e-05 Score=81.40 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=55.4
Q ss_pred CCeEEEEEeCCCCCcchhhhhh-------cc-----ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE
Q 010046 342 KNYHVVVLDSPGHKDFVPNMIS-------GA-----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~-------~l-----~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI 409 (519)
.++.++||||||........+. .. ..+|.+++|+|+..+ .....+...+.+..+. .-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~--~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGL--TG 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCC--CE
Confidence 5678999999996543333221 11 238999999999865 1222233333333443 46
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccc
Q 010046 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el 462 (519)
+|+||+|....... +..... ..+ +++.+++ +|++++++
T Consensus 222 ~IlTKlDe~~~~G~----~l~~~~----~~~-----~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTAKGGI----ILSIAY----ELK-----LPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCCCccH----HHHHHH----HHC-----cCEEEEe--CCCChHhC
Confidence 89999997643222 222222 223 3556666 88888776
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.16 E-value=3.9e-06 Score=81.22 Aligned_cols=67 Identities=24% Similarity=0.451 Sum_probs=42.6
Q ss_pred CCeEEEEEeCCCCCcchhhhhh------ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~------~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
++..++||||||.......... .....+-++||++++.+ .........+....+.. =++++|+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~---------~~~~~~~~~~~~~~~~~--~lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG---------QEDLEQALAFYEAFGID--GLILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG---------GHHHHHHHHHHHHSSTC--EEEEEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC---------hHHHHHHHHHhhcccCc--eEEEEee
Confidence 4568999999995543332211 12257889999999965 23333555555556655 3669999
Q ss_pred cccc
Q 010046 416 DAVQ 419 (519)
Q Consensus 416 Dlv~ 419 (519)
|...
T Consensus 151 Det~ 154 (196)
T PF00448_consen 151 DETA 154 (196)
T ss_dssp TSSS
T ss_pred cCCC
Confidence 9764
No 343
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.14 E-value=2.6e-05 Score=76.90 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=54.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+...|+|+|.+++|||||+|+|++... .|. +. ......+.|+-+....... ..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~--------------------~f~--~~--~~~~~~T~gi~~~~~~~~~-~~~ 59 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLS--------------------GFD--VM--DTSQQTTKGIWMWSVPFKL-GKE 59 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCC--------------------CeE--ec--CCCCCCccceEEEeccccC-CCc
Confidence 3456799999999999999999996420 000 00 0012223344332221111 245
Q ss_pred eEEEEEeCCCCCcc------hhhhhhcccc--CCeEEEEeecCCC
Q 010046 344 YHVVVLDSPGHKDF------VPNMISGATQ--SDAAILVIDASVG 380 (519)
Q Consensus 344 ~~l~LiDTPG~~~f------~~~~~~~l~~--aD~vIlVVDas~g 380 (519)
..++|+||||.... ....+..+.. ++++||.++...-
T Consensus 60 ~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 60 HAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred ceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 78999999995432 2223344444 8999999888743
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=4.2e-06 Score=79.79 Aligned_cols=97 Identities=18% Similarity=0.040 Sum_probs=58.8
Q ss_pred chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHH-HH
Q 010046 357 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG-TF 435 (519)
Q Consensus 357 f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~-~~ 435 (519)
|...+..++..+|++|+|+|+..... .+...+ .....+. |+|+|+||+|+..... ..+.+...+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l--~~~~~~~-~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL--RLFGGNN-PVILVGNKIDLLPKDK-NLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH--HHhcCCC-cEEEEEEchhcCCCCC-CHHHHHHHHHHHH
Confidence 67777888899999999999986521 111222 1122344 5899999999974221 1111111110 11
Q ss_pred HHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 436 LRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 436 l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.+..++.. ..+|++||++|.|+.++++.+.
T Consensus 92 ~~~~~~~~--~~i~~vSA~~~~gi~eL~~~l~ 121 (190)
T cd01855 92 AAGLGLKP--KDVILISAKKGWGVEELINAIK 121 (190)
T ss_pred HhhcCCCc--ccEEEEECCCCCCHHHHHHHHH
Confidence 12233221 2579999999999999987654
No 345
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=1.9e-05 Score=81.70 Aligned_cols=136 Identities=21% Similarity=0.185 Sum_probs=83.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCC--CccchhhcccccccccccceEEEEEEE-eec
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVA-YFD 340 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~--~s~~~a~~~d~~~~e~~~GiT~~~~~~-~~~ 340 (519)
...+-|.++|+-..||||||+.|+...-- ..+.|- .+-.|..+|-...+...+|.+..+... .|.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dyp------------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~ 123 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYP------------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFR 123 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCC------------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchh
Confidence 34455999999999999999999854321 011110 111233344444455555655433210 010
Q ss_pred -----------------CC---CeEEEEEeCCCCCc-----------chhhhhhccccCCeEEEEeecCCCcccccccch
Q 010046 341 -----------------SK---NYHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTA 389 (519)
Q Consensus 341 -----------------~~---~~~l~LiDTPG~~~-----------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l 389 (519)
.. --+++|+||||.-. |.....=.+..+|.+|+++|+..-. +
T Consensus 124 gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-------I 196 (532)
T KOG1954|consen 124 GLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-------I 196 (532)
T ss_pred hhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-------c
Confidence 01 13589999999432 3333333567799999999998531 3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010046 390 KGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 390 ~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
.....+++..++...-+ +-||+||.|.+.
T Consensus 197 sdEf~~vi~aLkG~Edk-iRVVLNKADqVd 225 (532)
T KOG1954|consen 197 SDEFKRVIDALKGHEDK-IRVVLNKADQVD 225 (532)
T ss_pred cHHHHHHHHHhhCCcce-eEEEeccccccC
Confidence 45666777777766656 889999999984
No 346
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.11 E-value=2.2e-05 Score=80.04 Aligned_cols=55 Identities=29% Similarity=0.338 Sum_probs=45.1
Q ss_pred cEEEEEeecccc-------cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 407 QLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv-------~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|++||++|+|.+ .+..++|+.|...+++|+-.+|. ..|.+|++...||+-+...+
T Consensus 224 ~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 224 PVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred cEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchHHHHHHH
Confidence 499999999984 24567889999999999888874 66999999999998876543
No 347
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.10 E-value=7.3e-06 Score=74.58 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=52.9
Q ss_pred hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccchhHHHHHHHHHHHH
Q 010046 359 PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 436 (519)
Q Consensus 359 ~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l 436 (519)
......+..+|++++|+|+..+. .....++..++... +.| +|+|+||+|+.. ..... .+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~--~~~~~----~~~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL--------LFRPPDLERYVKEVDPRKK-NILLLNKADLLT--EEQRK----AWAEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc--------ccCCHHHHHHHHhccCCCc-EEEEEechhcCC--HHHHH----HHHHHH
Confidence 34567788899999999998762 12233444555444 445 899999999973 22222 333344
Q ss_pred HhcCCCCCCceEEEeccccCCC
Q 010046 437 RSCGFKDASLTWIPLSALENQN 458 (519)
Q Consensus 437 ~~~g~~~~~i~~IpvSA~tGeg 458 (519)
+..+ ..++++||++|.+
T Consensus 68 ~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEG-----IVVVFFSALKENA 84 (141)
T ss_pred HhcC-----CeEEEEEecCCCc
Confidence 4444 3679999999987
No 348
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.09 E-value=4.2e-06 Score=76.14 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
+++++|.+|+|||||+|+|++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999853
No 349
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=4.5e-06 Score=86.80 Aligned_cols=57 Identities=30% Similarity=0.390 Sum_probs=43.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+..+++|||.+|+|||||||+|++..... ....+|+|.......+..
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~------------------------------~s~~PG~Tk~~q~i~~~~--- 177 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK------------------------------TSNRPGTTKGIQWIKLDD--- 177 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee------------------------------eCCCCceecceEEEEcCC---
Confidence 45779999999999999999999654422 233478888777666554
Q ss_pred EEEEEeCCCC
Q 010046 345 HVVVLDSPGH 354 (519)
Q Consensus 345 ~l~LiDTPG~ 354 (519)
.+.|+||||.
T Consensus 178 ~i~LlDtPGi 187 (322)
T COG1161 178 GIYLLDTPGI 187 (322)
T ss_pred CeEEecCCCc
Confidence 4899999993
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.07 E-value=4.7e-06 Score=79.49 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.+|+|+|.+|+|||||+|+|++........ .........+|+|.......+.. .+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~----------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL----------------------KDLLTTSPIPGTTLDLIKIPLGN---GK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc----------------------ccccccCCCCCeeeeeEEEecCC---CC
Confidence 569999999999999999999543211100 00112233467777766555532 57
Q ss_pred EEEeCCCC
Q 010046 347 VVLDSPGH 354 (519)
Q Consensus 347 ~LiDTPG~ 354 (519)
.||||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 351
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.05 E-value=5.8e-06 Score=76.40 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=39.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
...+|+|+|.+|+|||||+|+|++..... ....+++|.......+. .
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~---~ 145 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK------------------------------VGNVPGTTTSQQEVKLD---N 145 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc------------------------------ccCCCCcccceEEEEec---C
Confidence 45789999999999999999999532211 12224555554444332 4
Q ss_pred EEEEEeCCCC
Q 010046 345 HVVVLDSPGH 354 (519)
Q Consensus 345 ~l~LiDTPG~ 354 (519)
.+.|+||||.
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6899999994
No 352
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.03 E-value=3.4e-05 Score=79.32 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=56.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC---
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~--- 341 (519)
..++|+|||.||+|||||+|+|...... -+.|.|++.-.....-..+..-++.-...+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-----------------~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~ 81 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-----------------AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSK 81 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-----------------ccCCCcceeccccceeecCchHHHHHHHhcCCcce
Confidence 5679999999999999999999843221 12232322211110000000000000000000
Q ss_pred CCeEEEEEeCCCC-------CcchhhhhhccccCCeEEEEeecC
Q 010046 342 KNYHVVVLDSPGH-------KDFVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 342 ~~~~l~LiDTPG~-------~~f~~~~~~~l~~aD~vIlVVDas 378 (519)
--..++++|++|. +-....+++.++.+|+++.|+++.
T Consensus 82 vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 82 VPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred eeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 1135889999993 336777888999999999999987
No 353
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.01 E-value=1.9e-06 Score=58.01 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=23.7
Q ss_pred CCceeeeccccCCCCCcccccccCCCCCc
Q 010046 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (519)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (519)
.|.|.|+.|||.|..+...|.|||++|.+
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 46799999999999999999999999963
No 354
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.01 E-value=1e-05 Score=82.76 Aligned_cols=57 Identities=26% Similarity=0.276 Sum_probs=41.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|+|||||+|+|++.... .....+|+|......... .
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~~---~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIKLG---K 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEEeC---C
Confidence 4678999999999999999999853221 112236777766544432 3
Q ss_pred EEEEEeCCCC
Q 010046 345 HVVVLDSPGH 354 (519)
Q Consensus 345 ~l~LiDTPG~ 354 (519)
.+.||||||.
T Consensus 167 ~~~l~DtPGi 176 (287)
T PRK09563 167 GLELLDTPGI 176 (287)
T ss_pred cEEEEECCCc
Confidence 6899999995
No 355
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.99 E-value=2.8e-05 Score=83.46 Aligned_cols=66 Identities=27% Similarity=0.486 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCCcchhh----hhh--ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKDFVPN----MIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~----~~~--~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.++.++||||||....... +.. ....++.++||+|+..+ ......+..+... .++--+|+||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G----------q~a~~~a~~F~~~-~~~~g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG----------QAAEAQAKAFKDS-VDVGSVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC----------hhHHHHHHHHHhc-cCCcEEEEECc
Confidence 3678999999995433222 222 23347899999999866 1112222222221 22357899999
Q ss_pred ccc
Q 010046 416 DAV 418 (519)
Q Consensus 416 Dlv 418 (519)
|..
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 975
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=1.4e-05 Score=73.89 Aligned_cols=79 Identities=24% Similarity=0.186 Sum_probs=49.1
Q ss_pred CeEEEEeecCCCcccccccchhHHHHHHH-HHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCce
Q 010046 369 DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 447 (519)
Q Consensus 369 D~vIlVVDas~g~~e~~~~~l~~~~~e~l-~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~ 447 (519)
|++|+|+|+..+.. .....+. ..+...+.| +|+|+||+|++. .+....+...+ .... ...
T Consensus 1 Dvvl~VvD~~~p~~--------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~~~~~----~~~~----~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLG--------TRSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKWLAYL----RHSY----PTI 61 (155)
T ss_pred CEEEEEEeccCCcc--------ccCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHHHHHH----HhhC----Cce
Confidence 78999999987621 1122222 344445555 999999999973 23222222222 2111 135
Q ss_pred EEEeccccCCCcccccccc
Q 010046 448 WIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 448 ~IpvSA~tGegI~el~~~i 466 (519)
++++||++|.|+.++.+.+
T Consensus 62 ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 62 PFKISATNGQGIEKKESAF 80 (155)
T ss_pred EEEEeccCCcChhhHHHHH
Confidence 7999999999999987754
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.97 E-value=1e-05 Score=82.13 Aligned_cols=57 Identities=28% Similarity=0.253 Sum_probs=39.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|+|||||+|+|++..... ....+|+|.......+. .
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~~---~ 163 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK------------------------------VGNRPGVTKGQQWIKLS---D 163 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeecceEEEEeC---C
Confidence 46889999999999999999998432111 11235666655444432 3
Q ss_pred EEEEEeCCCC
Q 010046 345 HVVVLDSPGH 354 (519)
Q Consensus 345 ~l~LiDTPG~ 354 (519)
.+.|+||||.
T Consensus 164 ~~~l~DtPG~ 173 (276)
T TIGR03596 164 GLELLDTPGI 173 (276)
T ss_pred CEEEEECCCc
Confidence 6899999996
No 358
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=3.4e-05 Score=79.36 Aligned_cols=85 Identities=26% Similarity=0.300 Sum_probs=56.1
Q ss_pred cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCC
Q 010046 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (519)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~ 444 (519)
+..+|++|+|+|+..+.+ ........+..+...++| +|+|+||+|+... ... ...+....+..+
T Consensus 78 aaniD~vllV~d~~~p~~------~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~----~~~~~~~~~~~g---- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDF------STDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEE----ARELLALYRAIG---- 141 (298)
T ss_pred eecCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHH----HHHHHHHHHHCC----
Confidence 577999999999975521 112333444445566666 7999999999621 111 122233334444
Q ss_pred CceEEEeccccCCCcccccccc
Q 010046 445 SLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 445 ~i~~IpvSA~tGegI~el~~~i 466 (519)
++++++||++|+|+.++++.+
T Consensus 142 -~~v~~vSA~~g~gi~~L~~~l 162 (298)
T PRK00098 142 -YDVLELSAKEGEGLDELKPLL 162 (298)
T ss_pred -CeEEEEeCCCCccHHHHHhhc
Confidence 367999999999999998754
No 359
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.96 E-value=1.4e-05 Score=75.08 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=39.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+++|.+|+|||||+|+|++.... .....+++|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 3468999999999999999999943211 112224556555544443 4
Q ss_pred EEEEEeCCCC
Q 010046 345 HVVVLDSPGH 354 (519)
Q Consensus 345 ~l~LiDTPG~ 354 (519)
.+.||||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 360
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.96 E-value=4.2e-06 Score=78.40 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..++|+|++|||||||+|+|++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 67999999999999999999964
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=97.95 E-value=1.2e-05 Score=84.53 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.++|+|.+|||||||||+|++...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 389999999999999999996543
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=1.9e-05 Score=83.64 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=40.7
Q ss_pred CeEEEEEeCCCCCcc----hhhhhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 343 NYHVVVLDSPGHKDF----VPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f----~~~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
+..++||||||.... ...+...+ ...+.++||+|++.. .....+++......++. =+++||+|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---------~~d~~~i~~~F~~~~id--glI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---------hHHHHHHHHHhcCCCCC--EEEEEccc
Confidence 468999999995332 22222222 336788999998754 12334444444444544 47899999
Q ss_pred ccc
Q 010046 417 AVQ 419 (519)
Q Consensus 417 lv~ 419 (519)
-..
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 764
No 363
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.94 E-value=1.5e-05 Score=75.62 Aligned_cols=82 Identities=16% Similarity=0.301 Sum_probs=43.0
Q ss_pred CeEEEEEeCCCCCcchhh-----hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 343 NYHVVVLDSPGHKDFVPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~-----~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
...++||.+.|..+.... .....-..+.+|.|+|+.... ....... .+..+...-. +||+||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~------~~~~~~~---~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFD------ELENIPE---LLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHG------GHTTHCH---HHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccccc------ccccchh---hhhhcchhcC-EEEEecccc
Confidence 457889999996554443 122234478999999997531 0111111 1222233332 789999999
Q ss_pred ccccchhHHHHHHHHHHH
Q 010046 418 VQYSKDRFDSIKVQLGTF 435 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~ 435 (519)
+... ..++.+++.++.+
T Consensus 154 ~~~~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 154 VSDE-QKIERVREMIREL 170 (178)
T ss_dssp HHHH---HHHHHHHHHHH
T ss_pred CChh-hHHHHHHHHHHHH
Confidence 9531 1334444444444
No 364
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.93 E-value=1.5e-05 Score=84.05 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=68.3
Q ss_pred CCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHH
Q 010046 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (519)
Q Consensus 354 ~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~ 433 (519)
.++|...+......++++++|+|+... ...+..++..++ +..|+++|+||+|+.... ...+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~--------~~s~~~~l~~~~---~~~piilV~NK~DLl~k~-~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDF--------EGSLIPELKRFV---GGNPVLLVGNKIDLLPKS-VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCC--------CCCccHHHHHHh---CCCCEEEEEEchhhCCCC-CCHHHHHHHHH
Confidence 456777666677889999999998754 122333443333 234599999999998532 22344555566
Q ss_pred HHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010046 434 TFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 434 ~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.+++..++... .++++||++|.|+.+++..+.
T Consensus 118 ~~~k~~g~~~~--~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 118 KRAKELGLKPV--DIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred HHHHHcCCCcC--cEEEecCCCCCCHHHHHHHHH
Confidence 66777776422 479999999999999988764
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.92 E-value=7.3e-06 Score=77.05 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCC-CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHH
Q 010046 352 PGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (519)
Q Consensus 352 PG~-~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e 430 (519)
||| .+...++...+..+|++++|+|+..+.. .....+...+ .+. |+|+|+||+|+.. ......+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~--------~~~~~i~~~~--~~k-~~ilVlNK~Dl~~--~~~~~~~~- 68 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLS--------SRNPLLEKIL--GNK-PRIIVLNKADLAD--PKKTKKWL- 68 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccC--------cCChhhHhHh--cCC-CEEEEEehhhcCC--hHHHHHHH-
Confidence 563 4566777888899999999999986521 1111222222 234 4899999999973 22221121
Q ss_pred HHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 431 ~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++..+ ..++++||+++.|+.++...+
T Consensus 69 ---~~~~~~~-----~~vi~iSa~~~~gi~~L~~~l 96 (171)
T cd01856 69 ---KYFESKG-----EKVLFVNAKSGKGVKKLLKAA 96 (171)
T ss_pred ---HHHHhcC-----CeEEEEECCCcccHHHHHHHH
Confidence 2222222 357999999999999987643
No 366
>PRK12289 GTPase RsgA; Reviewed
Probab=97.90 E-value=3.3e-05 Score=81.23 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=57.3
Q ss_pred hccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC
Q 010046 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (519)
Q Consensus 363 ~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~ 442 (519)
..+..+|.+++|+|+..+.+ . . ......+..+...+.| +|||+||+||+. ....+ .+...+..+|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~----~-~-~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~----~~~~~~~~~g~- 150 (352)
T PRK12289 85 PPVANADQILLVFALAEPPL----D-P-WQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQ----QWQDRLQQWGY- 150 (352)
T ss_pred hhhhcCCEEEEEEECCCCCC----C-H-HHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHH----HHHHHHHhcCC-
Confidence 35788999999999985521 1 1 1223333344455666 899999999983 22222 22333344554
Q ss_pred CCCceEEEeccccCCCccccccccc
Q 010046 443 DASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 443 ~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.++++||++|.|+.+++..+.
T Consensus 151 ----~v~~iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 151 ----QPLFISVETGIGLEALLEQLR 171 (352)
T ss_pred ----eEEEEEcCCCCCHHHHhhhhc
Confidence 579999999999999987653
No 367
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.90 E-value=0.0002 Score=78.08 Aligned_cols=53 Identities=28% Similarity=0.376 Sum_probs=42.8
Q ss_pred cEEEEEeeccccc-------ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 407 QLIVAVNKMDAVQ-------YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 407 piIVVvNKiDlv~-------~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
|++||++|.|... +..++++.|.+.|+.++-.+|. .+|.+|++...|+.-+..
T Consensus 198 pi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 198 PIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHHHHHH
Confidence 5999999999753 4457788888888888877774 669999999989887654
No 368
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=7.2e-06 Score=76.47 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
-++|+|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3789999999999999999854
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.89 E-value=3.7e-05 Score=75.66 Aligned_cols=66 Identities=26% Similarity=0.452 Sum_probs=52.3
Q ss_pred CCeEEEEEeC-CCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 342 KNYHVVVLDS-PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 342 ~~~~l~LiDT-PG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
+...++++|| +|.+.|.+-+ ...+|.+|+|+|.+.. -....+.+.++...++++++.+|+||+|..
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~--------sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYK--------SLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHH--------HHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4478999999 5677777654 4559999999999954 235677888889999987899999999853
No 370
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.88 E-value=3.6e-05 Score=82.88 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=84.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhccccccc-chhhhhHHHHhhCCCccchhhccccc--------------------
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK-QMHKYEKEAKLQGKGSFAYAWALDES-------------------- 322 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~-~v~~~~~~a~~~g~~s~~~a~~~d~~-------------------- 322 (519)
...++|+|||.-.+|||+.+..+.......... .+.+..........|.+..+...|..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 345789999999999999999886443211100 00000000000111122111111110
Q ss_pred --ccccccceEEEEEEEe--ecCCC-eEEEEEeCCCCC-------------cchhhhhhccccCCeEEEEeecCCCcccc
Q 010046 323 --AEERERGITMTVAVAY--FDSKN-YHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGSFEV 384 (519)
Q Consensus 323 --~~e~~~GiT~~~~~~~--~~~~~-~~l~LiDTPG~~-------------~f~~~~~~~l~~aD~vIlVVDas~g~~e~ 384 (519)
......|-|.....+. +..++ .+++|+|.||.. .+..+...++..+.++|++|--..
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----- 460 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----- 460 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC-----
Confidence 1111334444433333 33444 478999999932 244455667888999999874332
Q ss_pred cccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHH
Q 010046 385 GMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (519)
Q Consensus 385 ~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l 432 (519)
++.-+.....+...+...|.. .|+|++|+|+...+-.....|++.+
T Consensus 461 -VDAERSnVTDLVsq~DP~GrR-TIfVLTKVDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 461 -VDAERSIVTDLVSQMDPHGRR-TIFVLTKVDLAEKNVASPSRIQQII 506 (980)
T ss_pred -cchhhhhHHHHHHhcCCCCCe-eEEEEeecchhhhccCCHHHHHHHH
Confidence 111223444455555556655 8999999999864333333444333
No 371
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.88 E-value=4.3e-05 Score=79.76 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=85.8
Q ss_pred EEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh------C
Q 010046 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------G 404 (519)
Q Consensus 331 T~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~ 404 (519)
|..+....|..++..+.++|.+||+.-+..|+.....++++|||++.+.-....--+.......+.+.+.... .
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 4455666777888999999999999988899999999999999999885421111111122333444444331 1
Q ss_pred CCcEEEEEeecccccc--------------c-chhHHHHHHHHHHHHHhcCCCC-CCceEEEeccccCCCcccccccc
Q 010046 405 VDQLIVAVNKMDAVQY--------------S-KDRFDSIKVQLGTFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 405 ~ppiIVVvNKiDlv~~--------------~-~e~le~i~e~l~~~l~~~g~~~-~~i~~IpvSA~tGegI~el~~~i 466 (519)
..++|+++||.|+... . ....+.....+......+.... ..+....+.|..-.+|..+|.++
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 2359999999998521 1 1233344444444444433322 34555667888888888887654
No 372
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.86 E-value=9.9e-06 Score=78.24 Aligned_cols=150 Identities=14% Similarity=0.189 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhccccccc-chhhhhHHHHhhCCC-------ccchhhcccccccccccceEEEEEEE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQK-QMHKYEKEAKLQGKG-------SFAYAWALDESAEERERGITMTVAVA 337 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~-~v~~~~~~a~~~g~~-------s~~~a~~~d~~~~e~~~GiT~~~~~~ 337 (519)
..-+.|+|+.|+||||+.+.+..+...+.+. .+..+...+...... -.....+++.....++.|.-....+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 3457899999999999999998665443332 222222222222110 01112233334444444432211000
Q ss_pred ---------eecCCCeEEEEEeCCCCCc------chhhhhhcccc---CCeEEEEeecCCCcccccccchhHHHHHHHHH
Q 010046 338 ---------YFDSKNYHVVVLDSPGHKD------FVPNMISGATQ---SDAAILVIDASVGSFEVGMNTAKGLTREHAQL 399 (519)
Q Consensus 338 ---------~~~~~~~~l~LiDTPG~~~------f~~~~~~~l~~---aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l 399 (519)
....-...+.++|+|||.+ ..+....++.+ --+++|++|+.-- .+...+..-....+..
T Consensus 83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~---vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFL---VDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchh---hhHHHHHHHHHHHHHH
Confidence 0111245789999999654 34445555555 2357788887622 2222233333333444
Q ss_pred HHHhCCCcEEEEEeeccccc
Q 010046 400 IRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 400 l~~~~~ppiIVVvNKiDlv~ 419 (519)
...+.+| -|-|++||||+.
T Consensus 160 Mi~lE~P-~INvlsKMDLlk 178 (273)
T KOG1534|consen 160 MISLEVP-HINVLSKMDLLK 178 (273)
T ss_pred HHHhcCc-chhhhhHHHHhh
Confidence 4556778 599999999985
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=97.84 E-value=1.8e-05 Score=83.25 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|.+|||||||||+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999999543
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.82 E-value=0.00021 Score=67.02 Aligned_cols=67 Identities=24% Similarity=0.468 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCCcchhhhhhc------cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.+..++|+||||...+....... ....+.++||+++..+ .........+....+. .-+|+||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---------~~~~~~~~~~~~~~~~--~~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---------QDAVNQAKAFNEALGI--TGVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---------hHHHHHHHHHHhhCCC--CEEEEECC
Confidence 45678999999975332222221 2348999999999744 1222333344444453 46788999
Q ss_pred cccc
Q 010046 416 DAVQ 419 (519)
Q Consensus 416 Dlv~ 419 (519)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9874
No 375
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.81 E-value=2.5e-05 Score=78.17 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..++|+|.+|+|||||||+|++.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 36999999999999999999954
No 376
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.80 E-value=0.0002 Score=67.45 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.++|+|||+... ......+..+|.+|+|+..... -.......++++...+.+ +.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--------~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~- 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--------GLHDLERAVELVRHFGIP-VGVVINKYDLNDE- 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--------cHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc-
Confidence 567999999997532 2345567789999999998854 123445556666777776 7899999996521
Q ss_pred chhHHHHHHHHHHHHHhcCC
Q 010046 422 KDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~ 441 (519)
..+++..+++..++
T Consensus 159 ------~~~~~~~~~~~~~~ 172 (179)
T cd03110 159 ------IAEEIEDYCEEEGI 172 (179)
T ss_pred ------hHHHHHHHHHHcCC
Confidence 22344555666554
No 377
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.79 E-value=3.8e-05 Score=70.67 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
..+|+++|.+|+|||||+|+|.+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999984
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.79 E-value=1.9e-05 Score=80.27 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCC-CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHH
Q 010046 352 PGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (519)
Q Consensus 352 PG~-~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e 430 (519)
||| ......+...+..+|++|+|+|+..+.. .....+..++. +. |+|+|+||+|+.. ....+.+.+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~--------~~~~~i~~~l~--~k-p~IiVlNK~DL~~--~~~~~~~~~ 71 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS--------SRNPMIDEIRG--NK-PRLIVLNKADLAD--PAVTKQWLK 71 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------CCChhHHHHHC--CC-CEEEEEEccccCC--HHHHHHHHH
Confidence 664 3455667778889999999999986521 11222223331 33 5899999999973 222222222
Q ss_pred HHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 431 ~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++..+ ..++++||+++.|+.++.+.+
T Consensus 72 ----~~~~~~-----~~vi~iSa~~~~gi~~L~~~i 98 (276)
T TIGR03596 72 ----YFEEKG-----IKALAINAKKGKGVKKIIKAA 98 (276)
T ss_pred ----HHHHcC-----CeEEEEECCCcccHHHHHHHH
Confidence 222222 357999999999999986543
No 379
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.77 E-value=0.00023 Score=74.00 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=51.8
Q ss_pred CeEEEEEeCCCCCcchhhh--------hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 343 NYHVVVLDSPGHKDFVPNM--------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~--------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
....++|.|.|...-.+.. +......|.+|-|||+.+... ...........++ ..- =+||+||
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~-----~~~~~~~~~~~Qi---a~A-D~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE-----GLDAIAELAEDQL---AFA-DVIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh-----hHHHHHHHHHHHH---HhC-cEEEEec
Confidence 3678999999965532222 223344788999999997511 0110112222222 222 3789999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEecc
Q 010046 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA 453 (519)
+|++.. +.++.+...++.+ + +...++.++.
T Consensus 155 ~Dlv~~--~~l~~l~~~l~~l----n---p~A~i~~~~~ 184 (323)
T COG0523 155 TDLVDA--EELEALEARLRKL----N---PRARIIETSY 184 (323)
T ss_pred ccCCCH--HHHHHHHHHHHHh----C---CCCeEEEccc
Confidence 999953 3344444444443 3 3456676665
No 380
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.73 E-value=4.7e-05 Score=80.19 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc-cccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEE---------E
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA---------V 336 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~-~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~---------~ 336 (519)
++++|||.|++|||||+|+|+.... .+.. |. ..+.++..|+-.-.. +
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-----------------yp------ftTi~p~~g~v~v~d~r~d~L~~~~ 59 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-----------------PP------FTTIEPNAGVVNPSDPRLDLLAIYI 59 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-----------------CC------CCCCCCceeEEEechhHHHHHHHHh
Confidence 6899999999999999999985543 1111 11 111122222211000 0
Q ss_pred EeecCCCeEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecC
Q 010046 337 AYFDSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (519)
Q Consensus 337 ~~~~~~~~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas 378 (519)
..-......+.++|.||... ....++..++.+|++++||++.
T Consensus 60 ~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 60 KPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred CCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 00111234678999999432 5667888999999999999985
No 381
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.72 E-value=4.6e-05 Score=77.83 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...+++|++|+|||||+|+|...
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 36899999999999999999853
No 382
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=5.6e-05 Score=69.82 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=26.5
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCC
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 379 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~ 379 (519)
.++.++||||||.... ....+..+|.+|+|.....
T Consensus 90 ~~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~ 124 (148)
T cd03114 90 AGFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGA 124 (148)
T ss_pred cCCCEEEEECCccChh---hhhHHHhCCEEEEEECCCc
Confidence 4678999999995432 2347778999999988773
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=97.69 E-value=5e-05 Score=80.35 Aligned_cols=61 Identities=26% Similarity=0.310 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.++.|||.+|||||||||+|+...... .+.......+|+|.......+.. ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~-------------------------~~~~~~s~~pGTT~~~~~~~l~~---~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE-------------------------KDVITTSRFPGTTLDKIEIPLDD---GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc-------------------------cceEEecCCCCccceeEEEEcCC---Cc
Confidence 469999999999999999999432100 01122345578888766655533 25
Q ss_pred EEEeCCCCC
Q 010046 347 VVLDSPGHK 355 (519)
Q Consensus 347 ~LiDTPG~~ 355 (519)
.|+||||..
T Consensus 213 ~l~DTPGi~ 221 (365)
T PRK13796 213 FLYDTPGII 221 (365)
T ss_pred EEEECCCcc
Confidence 799999953
No 384
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.67 E-value=0.00014 Score=78.51 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
++..|+++|.+|+||||++..|...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999999999744
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.66 E-value=6e-05 Score=79.57 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.+|+|||.+|+|||||+|+|++...... ........+|+|.......+. ..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~~~---~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIPLD---DGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEEeC---CCC
Confidence 4799999999999999999995432110 011233447777776555442 246
Q ss_pred EEEeCCCCCcch---hhh-------hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 347 VVLDSPGHKDFV---PNM-------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 347 ~LiDTPG~~~f~---~~~-------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.|+||||..... ..+ +.--.......++++..+..+..++..+. ++.... ..+.+.++|-+
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d--------~~~~~~-~~~~~~~~~~~ 277 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFD--------YLKGEK-TSFTFYVSNEL 277 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEE--------EecCCc-eEEEEEccCCc
Confidence 799999954321 111 11123366788888877665444433221 111112 23667777766
Q ss_pred cc
Q 010046 417 AV 418 (519)
Q Consensus 417 lv 418 (519)
..
T Consensus 278 ~~ 279 (360)
T TIGR03597 278 NI 279 (360)
T ss_pred ee
Confidence 55
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.66 E-value=3.7e-05 Score=78.60 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=59.4
Q ss_pred CCCC-CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHH
Q 010046 351 SPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (519)
Q Consensus 351 TPG~-~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~ 429 (519)
-||| ..-...+...+..+|++|+|+|+..+.. ....++..++. +. |+|+|+||+|+.+ ....+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~--------~~~~~l~~~~~--~k-p~iiVlNK~DL~~--~~~~~~~~ 73 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS--------SENPMIDKIIG--NK-PRLLILNKSDLAD--PEVTKKWI 73 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC--------CCChhHHHHhC--CC-CEEEEEEchhcCC--HHHHHHHH
Confidence 3664 3345566778889999999999986521 12222233332 34 4899999999973 22222222
Q ss_pred HHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 430 e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++..+ ..++++||+++.|+.++.+.+
T Consensus 74 ----~~~~~~~-----~~vi~vSa~~~~gi~~L~~~l 101 (287)
T PRK09563 74 ----EYFEEQG-----IKALAINAKKGQGVKKILKAA 101 (287)
T ss_pred ----HHHHHcC-----CeEEEEECCCcccHHHHHHHH
Confidence 2222222 367999999999999886643
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.64 E-value=0.00012 Score=77.46 Aligned_cols=132 Identities=21% Similarity=0.227 Sum_probs=73.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccc-ccc-----chhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEe
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRI-TQK-----QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY 338 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i-~~~-----~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~ 338 (519)
+...|++||++||||||.+-.|....... ... +...|+..+..+-+ ++.+ .-++++.+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk------~Ya~------im~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK------TYAD------IMGVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH------HHHH------HhCCceEEecCH
Confidence 36789999999999999999987443311 011 22233333333221 1111 122333222211
Q ss_pred -------ecCCCeEEEEEeCCCCCcchhhhhh----ccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC
Q 010046 339 -------FDSKNYHVVVLDSPGHKDFVPNMIS----GAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (519)
Q Consensus 339 -------~~~~~~~l~LiDTPG~~~f~~~~~~----~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ 405 (519)
....+..++|+||.|...+....+. ++. ...-+.||++++.. ....+++......++.
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---------~~dlkei~~~f~~~~i 340 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---------YEDLKEIIKQFSLFPI 340 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---------hHHHHHHHHHhccCCc
Confidence 1234568999999995543333222 222 23456778888854 2345556665565655
Q ss_pred CcEEEEEeeccccc
Q 010046 406 DQLIVAVNKMDAVQ 419 (519)
Q Consensus 406 ppiIVVvNKiDlv~ 419 (519)
. =+++||+|-..
T Consensus 341 ~--~~I~TKlDET~ 352 (407)
T COG1419 341 D--GLIFTKLDETT 352 (407)
T ss_pred c--eeEEEcccccC
Confidence 5 36799999764
No 388
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=3.9e-05 Score=81.14 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.-.|+|+|++|+||||++.+|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 389
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.63 E-value=1.9e-05 Score=51.22 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.4
Q ss_pred CceeeeccccCCCCCcccccccCCC
Q 010046 49 RVWSCAICTYDNEEGMSVCDICGVL 73 (519)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~ 73 (519)
|.|.|+.|||.|......|++|+++
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 4699999999999999999999985
No 390
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.61 E-value=9.9e-05 Score=64.11 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCchhHhHHhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl 287 (519)
++|+++|..|+|||+|+.++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred CEEEEECCCChhHHHHHHHHh
Confidence 379999999999999999986
No 391
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.60 E-value=0.0012 Score=70.23 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=75.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEE---------
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--------- 335 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~--------- 335 (519)
-.+-|+|||++-+||||||.||........-...+. +....+ .+.. ...|.|+-..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~--reRa~D------------ELPQ-S~aGktImTTEPKFiP~eA 80 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYE--RERARD------------ELPQ-SGAGKTIMTTEPKFIPNEA 80 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHH--HHHhhh------------cCCc-CCCCCceeccCCcccCCcc
Confidence 356799999999999999999986554432222111 111111 1111 0122222111
Q ss_pred -EEee-cCCCeEEEEEeCCC--------CC-----c------------chhhhhhcccc-----CCeEEEEeecCCCccc
Q 010046 336 -VAYF-DSKNYHVVVLDSPG--------HK-----D------------FVPNMISGATQ-----SDAAILVIDASVGSFE 383 (519)
Q Consensus 336 -~~~~-~~~~~~l~LiDTPG--------~~-----~------------f~~~~~~~l~~-----aD~vIlVVDas~g~~e 383 (519)
...+ +.-..++.|+|+-| |. + |.....-+.+. +. +=+||-..-..++
T Consensus 81 v~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHST-IGiVVTTDGSi~d 159 (492)
T PF09547_consen 81 VEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHST-IGIVVTTDGSITD 159 (492)
T ss_pred eEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCc-eeEEEecCCCccC
Confidence 1111 23456788999998 11 1 11111111111 22 2233433333456
Q ss_pred ccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 384 VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 384 ~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
..++.+.....+...-++..+.| |||++|=.+
T Consensus 160 ipRe~Y~eAEervI~ELk~igKP-FvillNs~~ 191 (492)
T PF09547_consen 160 IPRENYVEAEERVIEELKEIGKP-FVILLNSTK 191 (492)
T ss_pred CChHHHHHHHHHHHHHHHHhCCC-EEEEEeCCC
Confidence 67777888888888999999988 999999776
No 392
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=9.8e-05 Score=78.01 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+...|+|+|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999743
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.57 E-value=0.00012 Score=75.04 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..++++|++|+|||||+|+|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 569999999999999999999643
No 394
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.56 E-value=0.0003 Score=73.01 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=82.4
Q ss_pred EEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc---cccc-ccchhHHHHHHHHHHHH--hCCC
Q 010046 333 TVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVG-MNTAKGLTREHAQLIRS--FGVD 406 (519)
Q Consensus 333 ~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~---~e~~-~~~l~~~~~e~l~ll~~--~~~p 406 (519)
.+....+...+..+.+||++|+......|..++..++++|||+|.+... .+.. ...+......+..++.. +...
T Consensus 150 Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~ 229 (317)
T cd00066 150 GIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANT 229 (317)
T ss_pred CeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCC
Confidence 3444456667889999999999999999999999999999999998531 0000 11121112222222221 1223
Q ss_pred cEEEEEeecccccc--------------c--chhHHHHHHHHHHHHHhcCC-CCCCceEEEeccccCCCcccccccc
Q 010046 407 QLIVAVNKMDAVQY--------------S--KDRFDSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv~~--------------~--~e~le~i~e~l~~~l~~~g~-~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||++||.|+... . ...++...+.+........- ....+....++|..-.++..+|..+
T Consensus 230 pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 230 SIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred CEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 59999999996421 1 12334444444444433321 1244666778999888888888654
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00048 Score=75.63 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+.-.|+|+|..|+||||++..|...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=97.50 E-value=0.00079 Score=72.70 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
++..|+++|.+|+||||++..|..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467799999999999998888764
No 397
>PRK13796 GTPase YqeH; Provisional
Probab=97.49 E-value=0.00026 Score=74.97 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=60.4
Q ss_pred hhhccccCC-eEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhc
Q 010046 361 MISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC 439 (519)
Q Consensus 361 ~~~~l~~aD-~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~ 439 (519)
++..+...+ ++++|||+... ...+..++..+. +..|+|+|+||+|+... ....+.+.+.+..+.+..
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~--------~~s~~~~L~~~~---~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDF--------NGSWIPGLHRFV---GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHhhcccCcEEEEEEECccC--------CCchhHHHHHHh---CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 556666666 89999998754 122333333322 23358999999999742 222334445555566666
Q ss_pred CCCCCCceEEEeccccCCCccccccccc
Q 010046 440 GFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 440 g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
|+... .++++||++|.|+.++++.+.
T Consensus 130 g~~~~--~v~~vSAk~g~gI~eL~~~I~ 155 (365)
T PRK13796 130 GLRPV--DVVLISAQKGHGIDELLEAIE 155 (365)
T ss_pred CCCcC--cEEEEECCCCCCHHHHHHHHH
Confidence 65422 469999999999999988653
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.49 E-value=0.00029 Score=72.10 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=54.5
Q ss_pred cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCC
Q 010046 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (519)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~ 444 (519)
+..+|.+|+|+|+..+.+ ...... ..+..+...++| +|+|+||+|+... ... . .........+
T Consensus 76 ~anvD~vllV~d~~~p~~-----s~~~ld-r~L~~~~~~~ip-~iIVlNK~DL~~~--~~~---~-~~~~~~~~~g---- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFF-----NPRLLD-RYLVAAEAAGIE-PVIVLTKADLLDD--EEE---E-LELVEALALG---- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCC-----CHHHHH-HHHHHHHHcCCC-EEEEEEHHHCCCh--HHH---H-HHHHHHHhCC----
Confidence 667999999999987621 122223 334445556666 7999999999742 111 1 1111122233
Q ss_pred CceEEEeccccCCCccccccccc
Q 010046 445 SLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 445 ~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.+++++||++|.|+.+++..+.
T Consensus 139 -~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 139 -YPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred -CeEEEEECCCCccHHHHHhhhc
Confidence 4789999999999999876543
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00025 Score=76.12 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=41.0
Q ss_pred CCCeEEEEEeCCCCCcchhhh---h---hccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 341 SKNYHVVVLDSPGHKDFVPNM---I---SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~---~---~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
..+..++||||+|........ + .......-.+||++++.+ .....+........++. =+++||
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~--~~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIH--GCIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCC--EEEEEe
Confidence 356789999999954422221 1 122235568899999965 12334444444444444 478999
Q ss_pred ccccc
Q 010046 415 MDAVQ 419 (519)
Q Consensus 415 iDlv~ 419 (519)
+|-..
T Consensus 336 lDEt~ 340 (420)
T PRK14721 336 VDEAA 340 (420)
T ss_pred eeCCC
Confidence 99764
No 400
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=5.8e-05 Score=80.69 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCCcch----hhhhhccc-----cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010046 342 KNYHVVVLDSPGHKDFV----PNMISGAT-----QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~----~~~~~~l~-----~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
.+..++||||||..... ..+...+. ...-.+||+|++.+ .....+........+.. =+|+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---------~~~~~~~~~~f~~~~~~--glIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---------YHHTLTVLKAYESLNYR--RILL 366 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---------HHHHHHHHHHhcCCCCC--EEEE
Confidence 46689999999954321 12221111 24468899999976 23444555555555555 4789
Q ss_pred eeccccc
Q 010046 413 NKMDAVQ 419 (519)
Q Consensus 413 NKiDlv~ 419 (519)
||+|-..
T Consensus 367 TKLDEt~ 373 (432)
T PRK12724 367 TKLDEAD 373 (432)
T ss_pred EcccCCC
Confidence 9999763
No 401
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=9.7e-05 Score=79.67 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCCcch----hhhhhccc---cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010046 342 KNYHVVVLDSPGHKDFV----PNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~----~~~~~~l~---~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
....++||||||..... ..+...+. ...-+++|++++.+ .....+........+.. =+++||
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---------~~~l~~~~~~f~~~~~~--~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---------YEDLKDIYKHFSRLPLD--GLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---------HHHHHHHHHHhCCCCCC--EEEEec
Confidence 35789999999954332 12222222 34567888999855 12334444444444432 488999
Q ss_pred ccccc
Q 010046 415 MDAVQ 419 (519)
Q Consensus 415 iDlv~ 419 (519)
+|...
T Consensus 367 lDet~ 371 (424)
T PRK05703 367 LDETS 371 (424)
T ss_pred ccccc
Confidence 99753
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.45 E-value=0.00049 Score=74.21 Aligned_cols=66 Identities=21% Similarity=0.412 Sum_probs=38.8
Q ss_pred CCeEEEEEeCCCCCcchhhhhh------ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~------~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.++.++|+||||.......... ....++.++||+|+..+ +........+....++. =+|+||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~--giIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLT--GVVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4568999999995433222222 23458889999999854 12222222222233433 4779999
Q ss_pred ccc
Q 010046 416 DAV 418 (519)
Q Consensus 416 Dlv 418 (519)
|-.
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 954
No 403
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.42 E-value=0.00095 Score=70.05 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+-.+|.|..|||||||+|+|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34788999999999999999853
No 404
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.42 E-value=0.00072 Score=70.97 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=83.6
Q ss_pred EEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc---cccc-ccchhHHHHHHHHHHHH--hCC
Q 010046 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVG-MNTAKGLTREHAQLIRS--FGV 405 (519)
Q Consensus 332 ~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~---~e~~-~~~l~~~~~e~l~ll~~--~~~ 405 (519)
..+....+...+..+.+||.+|+......|..++..++++|||+|.+.-. .+.. ...+......+..++.. +..
T Consensus 172 ~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~ 251 (342)
T smart00275 172 TGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFAN 251 (342)
T ss_pred cceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccC
Confidence 34445556677888999999999999999999999999999999998521 0100 11122222222222221 222
Q ss_pred CcEEEEEeecccccc--------------cc-hhHHHHHHHHHHHHHhcCC--CCCCceEEEeccccCCCcccccccc
Q 010046 406 DQLIVAVNKMDAVQY--------------SK-DRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 406 ppiIVVvNKiDlv~~--------------~~-e~le~i~e~l~~~l~~~g~--~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.|+||++||.|+... .. ...+...+.+........- ....+.+..++|..-.++..+|..+
T Consensus 252 ~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 252 TSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred CcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 359999999997531 11 2334444444444443322 2234667788899888888887643
No 405
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.41 E-value=0.00099 Score=69.26 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+-.+|.|.-|||||||+|+|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345788999999999999999854
No 406
>PRK00098 GTPase RsgA; Reviewed
Probab=97.40 E-value=0.00022 Score=73.43 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..++|+|.+|+|||||+|+|++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 469999999999999999998543
No 407
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00065 Score=67.09 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|.++|.--+|||++-....+...- .+..-.+.+..++.+. +...-..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP--------------------------neTlflESTski~~d~----is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP--------------------------NETLFLESTSKITRDH----ISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC--------------------------CceeEeeccCcccHhh----hhhhhcce
Confidence 34999999999999998877643210 0111111122222211 11122468
Q ss_pred EEEeCCCCCcchhhhh---hccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCc---EEEEEeecccccc
Q 010046 347 VVLDSPGHKDFVPNMI---SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ---LIVAVNKMDAVQY 420 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~---~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~pp---iIVVvNKiDlv~~ 420 (519)
.+||.|||-+|..... .-.+++-++|||||+... ...+.+.-++-+.+...+.| +=|.+.|+|-+..
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-------y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-------YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-------HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 8999999887654432 245779999999999854 12234444555555554433 5688999997632
Q ss_pred c--chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 421 S--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~--~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+....|.++...-|...|...-.+.|..+|... ..|.|.|..+
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkv 197 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKV 197 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHH
Confidence 1 1233456677777788888877777777777654 4677777654
No 408
>PRK01889 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00062 Score=71.87 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=57.1
Q ss_pred cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCC
Q 010046 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (519)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~ 444 (519)
+..+|.+++|+++... +. .......+..+...+++| +||+||+||... .+...+.+..+ . .
T Consensus 110 aANvD~vliV~s~~p~-----~~--~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~----~~~~~~~~~~~--~-----~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-----FN--LRRIERYLALAWESGAEP-VIVLTKADLCED----AEEKIAEVEAL--A-----P 170 (356)
T ss_pred EEeCCEEEEEEecCCC-----CC--hhHHHHHHHHHHHcCCCE-EEEEEChhcCCC----HHHHHHHHHHh--C-----C
Confidence 4679999999999743 11 125666777778888885 789999999842 11122223222 1 2
Q ss_pred CceEEEeccccCCCcccccccc
Q 010046 445 SLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 445 ~i~~IpvSA~tGegI~el~~~i 466 (519)
..++|++||++|.|+.++...+
T Consensus 171 g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 171 GVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred CCcEEEEECCCCccHHHHHHHh
Confidence 3577999999999999987654
No 409
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.36 E-value=0.0013 Score=71.94 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=88.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+-.+..++|..++|||.|++.|++..-.- .......... .++...+...
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~---------------------------~~~~~~~~~~--avn~v~~~g~ 472 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD---------------------------NNTGTTKPRY--AVNSVEVKGQ 472 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc---------------------------ccccCCCCce--eeeeeeeccc
Confidence 4566889999999999999999999532110 0000001111 1222222344
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
..-++|-|.+-. ......... ..||++++|+|.+.+. ++ +........-.....-|+++|..|+|+-...
T Consensus 473 ~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~---sf----~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~- 542 (625)
T KOG1707|consen 473 QKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPR---SF----EYLAEVYNKYFDLYKIPCLMVATKADLDEVP- 542 (625)
T ss_pred cceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCch---HH----HHHHHHHHHhhhccCCceEEEeeccccchhh-
Confidence 455666665543 111111111 6699999999999652 22 2222233222222344599999999986432
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEecccc-CCCccccccccc
Q 010046 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE-NQNLVTAPDDGI 467 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~t-GegI~el~~~i~ 467 (519)
+++.-+...+.+++++..+ +.+|.+. +. .++|..++
T Consensus 543 ---Q~~~iqpde~~~~~~i~~P----~~~S~~~~~s--~~lf~kL~ 579 (625)
T KOG1707|consen 543 ---QRYSIQPDEFCRQLGLPPP----IHISSKTLSS--NELFIKLA 579 (625)
T ss_pred ---hccCCChHHHHHhcCCCCC----eeeccCCCCC--chHHHHHH
Confidence 1222223667778888776 7777774 33 66766543
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.00082 Score=71.63 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+..|+++|++|+||||.+..|...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998743
No 411
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.00069 Score=68.82 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCcc----hhhhhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 343 NYHVVVLDSPGHKDF----VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f----~~~~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
+..++|+||||.... ...+... ....+-++||++++.. .....+.+......++. =+++||+|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---------~~d~~~~~~~f~~~~~~--~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---------HHHHHHHHHHhCCCCCC--EEEEEeec
Confidence 568999999995432 2222222 2346788999999854 12333344444444444 47899999
Q ss_pred ccc
Q 010046 417 AVQ 419 (519)
Q Consensus 417 lv~ 419 (519)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 764
No 412
>PRK12288 GTPase RsgA; Reviewed
Probab=97.30 E-value=0.00078 Score=70.87 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=54.5
Q ss_pred cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCC
Q 010046 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (519)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~ 444 (519)
+..+|.+++|++..... + +....++ +..+...++| +|||+||+|+... ...+.+ ..+...++..+
T Consensus 118 aANvD~vlIV~s~~p~~---s---~~~Ldr~-L~~a~~~~i~-~VIVlNK~DL~~~--~~~~~~-~~~~~~y~~~g---- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL---S---LNIIDRY-LVACETLGIE-PLIVLNKIDLLDD--EGRAFV-NEQLDIYRNIG---- 182 (347)
T ss_pred EEEccEEEEEEeCCCCC---C---HHHHHHH-HHHHHhcCCC-EEEEEECccCCCc--HHHHHH-HHHHHHHHhCC----
Confidence 45699999999876431 1 2223333 3355566677 7899999999742 211112 22222333444
Q ss_pred CceEEEeccccCCCcccccccc
Q 010046 445 SLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 445 ~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++++||++|+|+.++++.+
T Consensus 183 -~~v~~vSA~tg~GideL~~~L 203 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEELEAAL 203 (347)
T ss_pred -CeEEEEeCCCCcCHHHHHHHH
Confidence 478999999999999998754
No 413
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.30 E-value=0.00023 Score=76.66 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+.|++||.||+||||+||+|.|.... ....++|-|....++.+. -.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV------------------------------sVS~TPGkTKHFQTi~ls---~~ 360 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV------------------------------SVSSTPGKTKHFQTIFLS---PS 360 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee------------------------------eeecCCCCcceeEEEEcC---CC
Confidence 689999999999999999999965432 234457777766555544 36
Q ss_pred EEEEeCCC--CCcchh
Q 010046 346 VVVLDSPG--HKDFVP 359 (519)
Q Consensus 346 l~LiDTPG--~~~f~~ 359 (519)
+.|.|+|| +..|..
T Consensus 361 v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 361 VCLCDCPGLVFPSFSP 376 (562)
T ss_pred ceecCCCCccccCCCc
Confidence 89999999 344443
No 414
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.26 E-value=0.00032 Score=71.58 Aligned_cols=65 Identities=28% Similarity=0.309 Sum_probs=45.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
....+|.|+|.||+|||||+|++........ ........+|+|+.+....--...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-------------------------k~a~vG~~pGVT~~V~~~iri~~r 195 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKK-------------------------KAARVGAEPGVTRRVSERIRISHR 195 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhc-------------------------cceeccCCCCceeeehhheEeccC
Confidence 3567899999999999999999874322211 111233458888877664333455
Q ss_pred eEEEEEeCCC
Q 010046 344 YHVVVLDSPG 353 (519)
Q Consensus 344 ~~l~LiDTPG 353 (519)
..+.++||||
T Consensus 196 p~vy~iDTPG 205 (335)
T KOG2485|consen 196 PPVYLIDTPG 205 (335)
T ss_pred CceEEecCCC
Confidence 5689999999
No 415
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.24 E-value=0.00052 Score=67.58 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCeEEEEEeCCCCCc------chhhhhhccccCCe---EEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010046 342 KNYHVVVLDSPGHKD------FVPNMISGATQSDA---AILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~------f~~~~~~~l~~aD~---vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
....++|+|+|||.+ ....+.+.+...+. +|-++|+.- ..+...+.....-.+.-+-.+..|+ |-|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~y---cs~p~~~iS~lL~sl~tMl~melph-VNvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHY---CSDPSKFISSLLVSLATMLHMELPH-VNVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeecee---eCChHHHHHHHHHHHHHHHhhcccc-hhhh
Confidence 356799999999654 23334555555554 444555542 2222223333333333334456775 8899
Q ss_pred eeccccc
Q 010046 413 NKMDAVQ 419 (519)
Q Consensus 413 NKiDlv~ 419 (519)
.|+|+..
T Consensus 171 SK~Dl~~ 177 (290)
T KOG1533|consen 171 SKADLLK 177 (290)
T ss_pred hHhHHHH
Confidence 9999864
No 416
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.00074 Score=69.80 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhc
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..++.-|.|||-.|+||||-|..|.+..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 4568889999999999999999997654
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.17 E-value=0.0025 Score=57.98 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=49.4
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccc
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~ 422 (519)
+.++|+|+|+.. .......+..+|.+++|++.+... + ..+...++.+.. ....++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s-------~-~~~~~~l~~l~~~~~~~~~~lVvN~~~~~---- 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTS-------I-TDAYALIKKLAKQLRVLNFRVVVNRAESP---- 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhH-------H-HHHHHHHHHHHHhcCCCCEEEEEeCCCCH----
Confidence 689999999853 333456678899999999988541 1 122333333332 2344588999999743
Q ss_pred hhHHHHHHHHHHHHHh
Q 010046 423 DRFDSIKVQLGTFLRS 438 (519)
Q Consensus 423 e~le~i~e~l~~~l~~ 438 (519)
...+++.+.+++.+..
T Consensus 111 ~~~~~~~~~~~~~~~r 126 (139)
T cd02038 111 KEGKKVFKRLSNVSNR 126 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2233445555554433
No 418
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.15 E-value=0.0035 Score=58.28 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=45.0
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.++|||||+.... .....+..+|.+|+|++..... .......++.+...+.+.+.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS--------LRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch--------HHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999986433 3445677899999999988541 22334455555555666578999999864
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.00091 Score=76.43 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|||+.|+||||++..|.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3578999999999999999998543
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.00019 Score=78.22 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|+|||..|+||||++..|.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 356999999999999999999854
No 421
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0015 Score=69.62 Aligned_cols=138 Identities=23% Similarity=0.361 Sum_probs=70.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhccccccc----chhhhhHHHHh--------hCCCccchhhcccccccccccce
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK----QMHKYEKEAKL--------QGKGSFAYAWALDESAEERERGI 330 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~----~v~~~~~~a~~--------~g~~s~~~a~~~d~~~~e~~~Gi 330 (519)
..++..|.++|.-|+||||....|..+...-... ....|+..+.. .+-..|.. .....+.. +
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-----~~~~~Pv~-I 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-----GTEKDPVE-I 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-----CCCCCHHH-H
Confidence 4567889999999999999999997553321110 01111111111 11111100 00000000 0
Q ss_pred EEEEEEEeecCCCeEEEEEeCCCCCcchhhh------hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC
Q 010046 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (519)
Q Consensus 331 T~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~ 404 (519)
.......+....+.++|+||+|.......+ +...-.+|=++||+|+..| +........+-...+
T Consensus 171 -ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------QdA~~~A~aF~e~l~ 240 (451)
T COG0541 171 -AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------QDAVNTAKAFNEALG 240 (451)
T ss_pred -HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------hHHHHHHHHHhhhcC
Confidence 000011123345789999999944433333 3345569999999999976 112222222223333
Q ss_pred CCcEEEEEeecccc
Q 010046 405 VDQLIVAVNKMDAV 418 (519)
Q Consensus 405 ~ppiIVVvNKiDlv 418 (519)
+- =||++|+|--
T Consensus 241 it--GvIlTKlDGd 252 (451)
T COG0541 241 IT--GVILTKLDGD 252 (451)
T ss_pred Cc--eEEEEcccCC
Confidence 33 4788999843
No 422
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.03 E-value=0.004 Score=54.02 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCC---cEEEEEee
Q 010046 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNK 414 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~p---piIVVvNK 414 (519)
.++|+|||+.... .....+..+|.+|+|++.... -.......++.++..+.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP--------SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH--------HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999996543 334566789999999998854 223455555666665543 57888886
No 423
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.002 Score=67.52 Aligned_cols=129 Identities=22% Similarity=0.395 Sum_probs=68.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhccc-------ccccchhhhhHHHHhhCCCccchhhccccccccc-ccceEEEE
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR-------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER-ERGITMTV 334 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~-------i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~-~~GiT~~~ 334 (519)
+.++--|.+||.-|+||||.+-.|.++... +..++..+ -..|+....- ..++.+..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa----------------gAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA----------------GAFDQLKQNATKARVPFYG 161 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc----------------chHHHHHHHhHhhCCeeEe
Confidence 345667999999999999999999755321 11111100 0111111100 11222211
Q ss_pred EEE-------------eecCCCeEEEEEeCCCCCc----chhhh--hhccccCCeEEEEeecCCCcccccccchhHHHHH
Q 010046 335 AVA-------------YFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 335 ~~~-------------~~~~~~~~l~LiDTPG~~~----f~~~~--~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (519)
.+. .|..++..++|+||.|... ...++ ....-.+|-+|||+|++-| +....+
T Consensus 162 syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---------Qaae~Q 232 (483)
T KOG0780|consen 162 SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---------QAAEAQ 232 (483)
T ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---------HhHHHH
Confidence 111 2344678999999999322 22222 2334559999999999966 111222
Q ss_pred HHHHHHHhCCCcEEEEEeecccc
Q 010046 396 HAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
...+-....+- -+++||+|-.
T Consensus 233 a~aFk~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 233 ARAFKETVDVG--AVILTKLDGH 253 (483)
T ss_pred HHHHHHhhccc--eEEEEecccC
Confidence 22222222332 4678999953
No 424
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.92 E-value=0.0033 Score=64.00 Aligned_cols=86 Identities=16% Similarity=0.279 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCCCcchhhhhh--------ccccCCeEEEEeecCCCcccccccchhH-HHHHHHHHHHHhCCCcEEEEEe
Q 010046 343 NYHVVVLDSPGHKDFVPNMIS--------GATQSDAAILVIDASVGSFEVGMNTAKG-LTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~--------~l~~aD~vIlVVDas~g~~e~~~~~l~~-~~~e~l~ll~~~~~ppiIVVvN 413 (519)
....+++.|.|...-.+.... .--..|++|-|||+.+.....+-....+ +.+.+.+++.. =-|++|
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A-----D~II~N 219 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA-----DRIIMN 219 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh-----heeeec
Confidence 356789999997663332211 1123789999999986521111111111 12222232222 136799
Q ss_pred ecccccccchhHHHHHHHHHHH
Q 010046 414 KMDAVQYSKDRFDSIKVQLGTF 435 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~ 435 (519)
|.|++ +.+.+..+++.++.+
T Consensus 220 KtDli--~~e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 220 KTDLV--SEEEVKKLRQRIRSI 239 (391)
T ss_pred ccccc--CHHHHHHHHHHHHHh
Confidence 99999 446666666655544
No 425
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.86 E-value=0.00064 Score=71.38 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=43.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
-++.++|+|||.+|+||||+||+|..... ......+|+|..+....++
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~------------------------------C~vg~~pGvT~smqeV~Ld-- 296 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKA------------------------------CNVGNVPGVTRSMQEVKLD-- 296 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcc------------------------------ccCCCCccchhhhhheecc--
Confidence 46789999999999999999999983221 2233347777765555443
Q ss_pred CeEEEEEeCCCC
Q 010046 343 NYHVVVLDSPGH 354 (519)
Q Consensus 343 ~~~l~LiDTPG~ 354 (519)
..|.|+|.||.
T Consensus 297 -k~i~llDsPgi 307 (435)
T KOG2484|consen 297 -KKIRLLDSPGI 307 (435)
T ss_pred -CCceeccCCce
Confidence 47899999994
No 426
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.0047 Score=62.29 Aligned_cols=138 Identities=19% Similarity=0.266 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC--CC
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KN 343 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~--~~ 343 (519)
.++|..||.+|-||||||..|.+..... .+.. ...+++........+.. -.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~-~p~~--------------------------H~~~~V~L~~~TyelqEsnvr 94 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFES-EPST--------------------------HTLPNVKLQANTYELQESNVR 94 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCC-CCCc--------------------------cCCCCceeecchhhhhhcCee
Confidence 5789999999999999999998432211 0000 00122222222222222 23
Q ss_pred eEEEEEeCCCCCc-------------chh-hhh-------------hc--cccCCeEEEEeecCCCcccccccchhHHHH
Q 010046 344 YHVVVLDSPGHKD-------------FVP-NMI-------------SG--ATQSDAAILVIDASVGSFEVGMNTAKGLTR 394 (519)
Q Consensus 344 ~~l~LiDTPG~~~-------------f~~-~~~-------------~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~ 394 (519)
.+++|+||.|..+ |.. .+. .. =...++|+|.|..+.- .+.....
T Consensus 95 lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-------~LKslDL 167 (406)
T KOG3859|consen 95 LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-------SLKSLDL 167 (406)
T ss_pred EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-------chhHHHH
Confidence 5789999999432 110 001 11 1337889999987733 1333333
Q ss_pred HHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCC
Q 010046 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 395 e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~ 441 (519)
-.+.-+.. .+. ||-|+-|.|.+ +...+...+..+...|...|+
T Consensus 168 vtmk~Lds-kVN-IIPvIAKaDti--sK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 168 VTMKKLDS-KVN-IIPVIAKADTI--SKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred HHHHHHhh-hhh-hHHHHHHhhhh--hHHHHHHHHHHHHHHHHhcCc
Confidence 33332222 122 66688899988 667788888888888887775
No 427
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.65 E-value=0.0034 Score=75.94 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=17.0
Q ss_pred EEEEcCCCCCchhHhHHh
Q 010046 269 LAIVGHVDSGKSTLSGRL 286 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrL 286 (519)
.+|||++|+||||||.+-
T Consensus 114 YlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred EEEECCCCCchhHHHHhC
Confidence 899999999999999986
No 428
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.58 E-value=0.0058 Score=65.11 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=80.9
Q ss_pred EEEEEEeecC-CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcc---cccccchhHHHHHHHHHHHH-----
Q 010046 332 MTVAVAYFDS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF---EVGMNTAKGLTREHAQLIRS----- 402 (519)
Q Consensus 332 ~~~~~~~~~~-~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~---e~~~~~l~~~~~e~l~ll~~----- 402 (519)
..+....+.. ....+.|+|++|+..-...|+..+..++++|||++.+.-.. +... .....+.+.+...
T Consensus 223 ~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~---~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 223 TGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPN---TNRLHESLNLFESICNNP 299 (389)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTT---SBHHHHHHHHHHHHHTSG
T ss_pred CCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccch---HHHHHHHHHHHHHHHhCc
Confidence 3444555666 88999999999999999999999999999999999874311 1111 1122233333322
Q ss_pred -hCCCcEEEEEeecccccc---------------cc---hhHHHHHHHHHHHHHhcCCCC---CCceEEEeccccCCCcc
Q 010046 403 -FGVDQLIVAVNKMDAVQY---------------SK---DRFDSIKVQLGTFLRSCGFKD---ASLTWIPLSALENQNLV 460 (519)
Q Consensus 403 -~~~ppiIVVvNKiDlv~~---------------~~---e~le~i~e~l~~~l~~~g~~~---~~i~~IpvSA~tGegI~ 460 (519)
+...++||++||+|+... .. ...+...+.+........-.. ..+.+..++|....++.
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 233469999999997421 01 233444444444433322211 44566788888888887
Q ss_pred cccccc
Q 010046 461 TAPDDG 466 (519)
Q Consensus 461 el~~~i 466 (519)
.+|..+
T Consensus 380 ~v~~~v 385 (389)
T PF00503_consen 380 KVFNAV 385 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777543
No 429
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.57 E-value=0.0091 Score=61.28 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=59.8
Q ss_pred ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCC
Q 010046 366 TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDAS 445 (519)
Q Consensus 366 ~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~ 445 (519)
...|-+|+|+.+..+.+ -..+....+-++...++.| |||+||+||+.. +.... +++......+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~------~~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~--~~~~~--~~~~~~y~~~gy---- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDF------NTNLLDRYLVLAEAGGIEP-VIVLNKIDLLDD--EEAAV--KELLREYEDIGY---- 142 (301)
T ss_pred cccceEEEEEeccCCCC------CHHHHHHHHHHHHHcCCcE-EEEEEccccCcc--hHHHH--HHHHHHHHhCCe----
Confidence 34777888888887743 1245666677778888885 778999999953 32222 445555566665
Q ss_pred ceEEEeccccCCCccccccc
Q 010046 446 LTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 446 i~~IpvSA~tGegI~el~~~ 465 (519)
+++.+||++++|+.++...
T Consensus 143 -~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 143 -PVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred -eEEEecCcCcccHHHHHHH
Confidence 6799999999999998653
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.52 E-value=0.017 Score=47.26 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=46.1
Q ss_pred EEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEEE
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~L 348 (519)
|++.|..|+||||+...|...... .|... ..++ .+++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 678899999999999999833211 01100 0011 7899
Q ss_pred EeCCCCCcchhh-hhhccccCCeEEEEeecCCC
Q 010046 349 LDSPGHKDFVPN-MISGATQSDAAILVIDASVG 380 (519)
Q Consensus 349 iDTPG~~~f~~~-~~~~l~~aD~vIlVVDas~g 380 (519)
+|+|+....... .......+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999996543321 24456679999999998854
No 431
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.012 Score=63.37 Aligned_cols=73 Identities=19% Similarity=0.403 Sum_probs=46.9
Q ss_pred CCCeEEEEEeCCCCCcchhhhhh------ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE--EEE
Q 010046 341 SKNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI--VAV 412 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~------~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI--VVv 412 (519)
..+..++|+||+|...-....+. .+..+|.+|+|=.|--|. + -..+...+...+.....|+.| |++
T Consensus 464 ~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-----d-sv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-----D-SVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred hcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-----H-HHHHHHHHHHHHhcCCCccccceEEE
Confidence 36778999999994433322222 345699999998776551 1 224555555555555545444 899
Q ss_pred eeccccc
Q 010046 413 NKMDAVQ 419 (519)
Q Consensus 413 NKiDlv~ 419 (519)
+|+|-++
T Consensus 538 tk~dtv~ 544 (587)
T KOG0781|consen 538 TKFDTVD 544 (587)
T ss_pred Eeccchh
Confidence 9999874
No 432
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.47 E-value=0.0092 Score=64.02 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=32.3
Q ss_pred cccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccc
Q 010046 251 PEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (519)
Q Consensus 251 ~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i 293 (519)
...|-.-.......-..+|+|+|.+|+|||||+++|....+..
T Consensus 204 ~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 204 FRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred HHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3455444555556667899999999999999999998664433
No 433
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.02 Score=59.43 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.-|+++|.-|+|||||++.|.+.
T Consensus 188 f~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhcc
Confidence 356999999999999999999854
No 434
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.23 E-value=0.0016 Score=68.39 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhh
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++.+.|++||.||+||||+||.|...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhc
Confidence 467899999999999999999999743
No 435
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.23 E-value=0.006 Score=57.80 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=33.5
Q ss_pred CeEEEEeecCCCcccccccchhHHHHHHHHH--HHHhCCCcEEEEEeecccccccchhHHHHHHHHHH
Q 010046 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (519)
Q Consensus 369 D~vIlVVDas~g~~e~~~~~l~~~~~e~l~l--l~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~ 434 (519)
|++++|+|+..+. .....++..+ +...+. |+|+|+||+|++ +.+.+..+.+.+..
T Consensus 1 DvVl~VvDar~p~--------~~~~~~i~~~~~l~~~~k-p~IlVlNK~DL~--~~~~l~~~~~~~~~ 57 (172)
T cd04178 1 DVILEVLDARDPL--------GCRCPQVEEAVLQAGGNK-KLVLVLNKIDLV--PKENVEKWLKYLRR 57 (172)
T ss_pred CEEEEEEECCCCC--------CCCCHHHHHHHHhccCCC-CEEEEEehhhcC--CHHHHHHHHHHHHh
Confidence 7899999998762 2222333333 333344 499999999998 34444444444433
No 436
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.16 E-value=0.0074 Score=65.40 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=54.4
Q ss_pred cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEeecccccccchhHHHHHHHHHH
Q 010046 356 DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (519)
Q Consensus 356 ~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvNKiDlv~~~~e~le~i~e~l~~ 434 (519)
++....++.+..+|+||.+|||.++.++.. ..+..+..... .+..||++||.||+. .++...+. .
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~--------~dLe~Yvke~d~~K~~~LLvNKaDLl~--~~qr~aWa----~ 228 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRS--------PDLEDYVKEVDPSKANVLLVNKADLLP--PEQRVAWA----E 228 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCC--------hhHHHHHhccccccceEEEEehhhcCC--HHHHHHHH----H
Confidence 466777888999999999999999854322 22333333332 244899999999994 44433343 4
Q ss_pred HHHhcCCCCCCceEEEecccc
Q 010046 435 FLRSCGFKDASLTWIPLSALE 455 (519)
Q Consensus 435 ~l~~~g~~~~~i~~IpvSA~t 455 (519)
++... +|.|++.||+.
T Consensus 229 YF~~~-----ni~~vf~SA~~ 244 (562)
T KOG1424|consen 229 YFRQN-----NIPVVFFSALA 244 (562)
T ss_pred HHHhc-----CceEEEEeccc
Confidence 43333 47889999987
No 437
>CHL00175 minD septum-site determining protein; Validated
Probab=96.12 E-value=0.046 Score=55.33 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=44.7
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
.+.++|+|||+... ......+..+|.+|+|++.... -.........++...+.+.+.+|+|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~--------si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEIT--------AIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChH--------HHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 57899999998643 2334456679999999987743 12334445555666666557889999974
No 438
>PRK13695 putative NTPase; Provisional
Probab=96.09 E-value=0.02 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
+|+|+|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998744
No 439
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.013 Score=69.92 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.9
Q ss_pred EEEEcCCCCCchhHhHHh
Q 010046 269 LAIVGHVDSGKSTLSGRL 286 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrL 286 (519)
-+|||++|+||||++...
T Consensus 128 y~viG~pgsGKTtal~~s 145 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS 145 (1188)
T ss_pred eEEecCCCCCcchHHhcc
Confidence 689999999999998764
No 440
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.04 E-value=0.03 Score=47.70 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCC
Q 010046 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g 380 (519)
+.++|+|+|+..... ....+..+|.+|++++....
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 679999999965332 33566779999999998754
No 441
>PRK01889 GTPase RsgA; Reviewed
Probab=95.99 E-value=0.0067 Score=64.08 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.+++|+|.+|+|||||+|.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4799999999999999999996533
No 442
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=95.77 E-value=0.0054 Score=57.68 Aligned_cols=30 Identities=27% Similarity=0.772 Sum_probs=26.7
Q ss_pred CCCCceeeeccccCCCCCcccccccCCCCC
Q 010046 46 SKPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 46 ~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
...|.|-|+.|||-|+.....|-||+|...
T Consensus 20 ~Deg~WdCsvCTFrNsAeAfkC~vCdvRKG 49 (228)
T KOG4477|consen 20 DDEGKWDCSVCTFRNSAEAFKCFVCDVRKG 49 (228)
T ss_pred cccCceeeeeeeecchhhhhheeeeccccc
Confidence 356789999999999999999999999763
No 443
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.70 E-value=0.018 Score=60.77 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=48.7
Q ss_pred CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHH-HHHhCCCcEEEEEeecccccccchhHHHHHHHHH
Q 010046 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (519)
Q Consensus 355 ~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l-l~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~ 433 (519)
..|...+...+..+|++|.|+||..+.. .-..+.-.. +...+.+++|+|+||+|++ +.+.++.+...|+
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlg--------tR~~~vE~~V~~~~gnKkLILVLNK~DLV--PrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLG--------TRCPEVEEAVLQAHGNKKLILVLNKIDLV--PREVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCC--------CCChhHHHHHHhccCCceEEEEeehhccC--CHHHHHHHHHHHH
Confidence 3466777777888999999999998732 222222222 2334435699999999999 5677676766666
Q ss_pred HHH
Q 010046 434 TFL 436 (519)
Q Consensus 434 ~~l 436 (519)
..+
T Consensus 204 ~~~ 206 (435)
T KOG2484|consen 204 REG 206 (435)
T ss_pred hhC
Confidence 553
No 444
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.66 E-value=0.0086 Score=65.23 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=85.4
Q ss_pred ccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceE
Q 010046 252 EKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 331 (519)
Q Consensus 252 e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT 331 (519)
+.|.+. ..-..+|++|||..++|||.|+.+++...- ...+.++.|..
T Consensus 20 qewtls----rsipelk~givg~~~sgktalvhr~ltgty-----------------------------~~~e~~e~~~~ 66 (749)
T KOG0705|consen 20 QEWTLS----RSIPELKLGIVGTSQSGKTALVHRYLTGTY-----------------------------TQDESPEGGRF 66 (749)
T ss_pred cceeee----cccchhheeeeecccCCceeeeeeecccee-----------------------------ccccCCcCccc
Confidence 456543 234578999999999999999999982110 00111122221
Q ss_pred EEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC--CcEE
Q 010046 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLI 409 (519)
Q Consensus 332 ~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~--ppiI 409 (519)
. ....+....+.+.+.|-+|+.+ ..+...+|++|||+....- .+ ++.+...+..+...++. .+++
T Consensus 67 k--kE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~---~s---~q~v~~l~~~l~~~r~r~~i~l~ 133 (749)
T KOG0705|consen 67 K--KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDE---QS---FQAVQALAHEMSSYRNISDLPLI 133 (749)
T ss_pred e--eeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccc---cC---HHHHHHHHhhcccccccccchHH
Confidence 1 1222445566677777777432 2344558999999987743 22 33333333333222211 2245
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010046 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
++.++ |.......+.. .-.+...++... ....+|...|.+|.++...|+.+
T Consensus 134 lvgtq-d~iS~~~~rv~-~da~~r~l~~~~----krcsy~et~atyGlnv~rvf~~~ 184 (749)
T KOG0705|consen 134 LVGTQ-DHISAKRPRVI-TDDRARQLSAQM----KRCSYYETCATYGLNVERVFQEV 184 (749)
T ss_pred hhcCc-chhhccccccc-chHHHHHHHHhc----CccceeecchhhhhhHHHHHHHH
Confidence 55554 44322111111 011111111111 12466999999999999998764
No 445
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.33 E-value=0.054 Score=42.11 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=25.2
Q ss_pred ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010046 366 TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 366 ~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
...++++|++|.+.... . .+..|..-...+-..+..+|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CG---y-sie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCG---Y-SIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTS---S--HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCC---C-CHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34789999999996521 1 23344443334444554456999999998
No 446
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.28 E-value=0.012 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|.+|||||||.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 447
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.23 E-value=0.095 Score=52.61 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
.+.++||||||..... .+...+..+|.+|+++..... ++.........+.......+.+.+.+|+|+++.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~----~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFD----SIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcc----cHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999854322 122346779999999887643 111111111111111122344434478999984
No 448
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.15 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..++|+|.|+||+|||||+.++...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH
Confidence 4578999999999999999999743
No 449
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.078 Score=56.81 Aligned_cols=39 Identities=31% Similarity=0.195 Sum_probs=29.2
Q ss_pred ccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhc
Q 010046 252 EKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 252 e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+.-++...+.-....-+|+|||+.|+|||||+..|++..
T Consensus 599 qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 599 QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 444444455444455689999999999999999999764
No 450
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.12 E-value=0.16 Score=49.28 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCCcchhhhhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----CCCcEEEEEeec
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~~ppiIVVvNKi 415 (519)
..+.++||||+|....... ... ...+|.+|+|+..... + + .-...++..++.. +.+...+++||+
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~----s---l-~~~~~l~~~i~~~~~~~~~~~~gvv~N~~ 185 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFM----A---L-YAANNICKGIRKYAKSGGVRLGGLICNSR 185 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHH----H---H-HHHHHHHHHHHHhCcccCCcEEEEEEeCC
Confidence 4689999999885532221 112 2379999999987743 1 1 1122333333333 333345899999
Q ss_pred cc
Q 010046 416 DA 417 (519)
Q Consensus 416 Dl 417 (519)
+.
T Consensus 186 ~~ 187 (212)
T cd02117 186 NT 187 (212)
T ss_pred CC
Confidence 84
No 451
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.79 E-value=0.019 Score=51.39 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEcCCCCCchhHhHHhhhhcc
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~ 291 (519)
|+|+|.+|+|||||+.+|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999985443
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.69 E-value=0.021 Score=50.86 Aligned_cols=22 Identities=55% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|..|+|||||++.|.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5999999999999999999854
No 453
>PRK07261 topology modulation protein; Provisional
Probab=94.64 E-value=0.021 Score=53.86 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999873
No 454
>PRK08233 hypothetical protein; Provisional
Probab=94.60 E-value=0.027 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+.+-|+|.|.+|+|||||.++|....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999998654
No 455
>PRK08118 topology modulation protein; Reviewed
Probab=94.53 E-value=0.025 Score=53.17 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.+|+|+|.+|+|||||...|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997443
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.50 E-value=0.034 Score=53.96 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhh
Q 010046 263 RMTQLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
..+..-|+|+|++|+|||||+++|..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34567799999999999999999973
No 457
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.44 E-value=0.15 Score=50.93 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCeEEEEEeCCCCCcchhh-hhhccccCCeEEEEeecCC
Q 010046 342 KNYHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASV 379 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~-~~~~l~~aD~vIlVVDas~ 379 (519)
..+.++||||||....... ....+..+|.+|+++....
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 3578999999986432211 1122335999999998874
No 458
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.43 E-value=0.2 Score=50.26 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
..+.++||||||...... +...+..+|.+|+++..... ++.........+.......+++.+.||+|+++.
T Consensus 114 ~~yD~ViID~~~~~~~~~-~~~~l~aAD~vlip~~~~~~----sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGG-FATPLQYADYALVVAANDFD----ALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccCc-cccchhhcCEEEEEecCchh----HHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 358899999998532211 12346779999998766532 111111111111111112334434588999874
No 459
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.41 E-value=0.027 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhh
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
+--.++|+|+.|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 344699999999999999998874
No 460
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.41 E-value=0.029 Score=44.31 Aligned_cols=21 Identities=38% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
..+|+|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999973
No 461
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.39 E-value=0.019 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
||+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999855
No 462
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.30 E-value=0.14 Score=50.76 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecc
Q 010046 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMD 416 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiD 416 (519)
..+.++||||||... ..+...+..+|.+|+.+..+.. ++.........+...... .+.+ +.+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~----d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL----DIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH----HHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 467999999999764 4445567789999988887643 222121222222222222 2444 679999987
No 463
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=94.29 E-value=0.12 Score=52.09 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=59.0
Q ss_pred EEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh------CCC
Q 010046 333 TVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVD 406 (519)
Q Consensus 333 ~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~~p 406 (519)
.+....|......|..+|..||++-...|+..+..+.++|||+..+.--...--+.-+....+.+.+.+.. ...
T Consensus 191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti 270 (379)
T KOG0099|consen 191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI 270 (379)
T ss_pred ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence 33444566677889999999999999999999999999999999885421111111223344444444332 222
Q ss_pred cEEEEEeecccc
Q 010046 407 QLIVAVNKMDAV 418 (519)
Q Consensus 407 piIVVvNKiDlv 418 (519)
.+|+.+||-|++
T Consensus 271 svIlFLNKqDll 282 (379)
T KOG0099|consen 271 SVILFLNKQDLL 282 (379)
T ss_pred heeEEecHHHHH
Confidence 389999999987
No 464
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.029 Score=53.50 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+|+|+|.+||||||+..+|....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998553
No 465
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.26 E-value=0.031 Score=44.63 Aligned_cols=20 Identities=45% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEcCCCCCchhHhHHhhh
Q 010046 269 LAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~ 288 (519)
|+|+|.+|+||||+.++|..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999983
No 466
>PRK14530 adenylate kinase; Provisional
Probab=94.25 E-value=0.032 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..+|+|+|.+|+||||+.+.|....+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975544
No 467
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.028 Score=56.19 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEcCCCCCchhHhHHhhhhc
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~ 290 (519)
|+|+|++|+|||||+|.+.|..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999999999998653
No 468
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.18 E-value=0.032 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.|+|+|++|+|||||+|.+.|-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 35999999999999999998754
No 469
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.10 E-value=0.038 Score=47.52 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..++|+|++|+||||++..|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46999999999999999999854
No 470
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.10 E-value=0.037 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|.+|+|||||++.|....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998654
No 471
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.09 E-value=0.03 Score=55.43 Aligned_cols=21 Identities=57% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEcCCCCCchhHhHHhhhh
Q 010046 269 LAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~ 289 (519)
|+|+|++|+|||||+|-|-+.
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 999999999999999988643
No 472
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.05 E-value=0.039 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010046 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
++.+-|+|+|.+|+|||||+++|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34557999999999999999999843
No 473
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.94 E-value=0.044 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010046 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|.+|+|||||+++|.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998654
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.87 E-value=0.041 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 59999999999999999997543
No 475
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.80 E-value=0.039 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEcCCCCCchhHhHHhhhh
Q 010046 269 LAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~ 289 (519)
|+|.|.+|+|||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 476
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.75 E-value=0.089 Score=54.88 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=62.2
Q ss_pred EEeCCCCC-cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010046 348 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 348 LiDTPG~~-~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
+-+.|||- ++.......+..+|+++.|+|+..+. ......+..+... ++.++|+||+|+++ ....+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~--------~s~~~~l~~~v~~---k~~i~vlNK~DL~~--~~~~~ 80 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPL--------GTRNPELERIVKE---KPKLLVLNKADLAP--KEVTK 80 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccc--------cccCccHHHHHcc---CCcEEEEehhhcCC--HHHHH
Confidence 34458864 46777788889999999999999772 2233333333332 23599999999994 34333
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010046 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
.+.+.+... .+ +..+.+++..+.+...+..
T Consensus 81 ~W~~~~~~~---~~-----~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 81 KWKKYFKKE---EG-----IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHHHHhc---CC-----CccEEEEeecccCccchHH
Confidence 333333322 12 3448899999888888763
No 477
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.64 E-value=0.36 Score=49.57 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=25.5
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCC
Q 010046 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 379 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~ 379 (519)
.+.++|+||||.... ..+...+..+|.+|+++....
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~ 150 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGF 150 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCH
Confidence 578999999986322 112344677999999998764
No 478
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.63 E-value=0.046 Score=54.46 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhh
Q 010046 249 YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 249 ~~~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...+.|.++.....-.+-=+|+|||+.|||||||++-|.+.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc
Confidence 34566777777766666678999999999999999999854
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.61 E-value=0.047 Score=52.01 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
...|+|+|.+|+|||||++.|++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999984
No 480
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.57 E-value=0.045 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|.+|||||||+++|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997543
No 481
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.56 E-value=0.32 Score=49.18 Aligned_cols=38 Identities=18% Similarity=0.033 Sum_probs=25.0
Q ss_pred CeEEEEEeCCCCCcchhh-hhhccccCCeEEEEeecCCC
Q 010046 343 NYHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASVG 380 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~-~~~~l~~aD~vIlVVDas~g 380 (519)
.+.++||||||....... +...+..+|.+|+++.....
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~ 154 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPM 154 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchHH
Confidence 588999999884322111 12233458999999988743
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.54 E-value=0.051 Score=49.77 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|..|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999843
No 483
>PRK06217 hypothetical protein; Validated
Probab=93.53 E-value=0.052 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.+|+|+|.+|+|||||..+|....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999999998543
No 484
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.49 E-value=0.057 Score=50.97 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..+|+|+|.+|||||||...|....+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999986543
No 485
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.47 E-value=0.05 Score=52.49 Aligned_cols=23 Identities=48% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999865
No 486
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.44 E-value=0.024 Score=64.47 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCCCc-------------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CC
Q 010046 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VD 406 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~-------------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~p 406 (519)
.-..++++|+||..+ +..+...++....++|+.|...+. .-.+.+.+.++++.. ..
T Consensus 130 ~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~---------d~ats~alkiarevDp~g~ 200 (657)
T KOG0446|consen 130 LVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS---------DIATSPALVVAREVDPGGS 200 (657)
T ss_pred CCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh---------hhhcCHHHHHHHhhCCCcc
Confidence 445789999999322 555667788889999988877642 123444455555532 12
Q ss_pred cEEEEEeecccccc
Q 010046 407 QLIVAVNKMDAVQY 420 (519)
Q Consensus 407 piIVVvNKiDlv~~ 420 (519)
+.|.|++|.|+.+.
T Consensus 201 RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 201 RTLEVITKFDFMDK 214 (657)
T ss_pred chhHHhhhHHhhhc
Confidence 37888999998753
No 487
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.36 E-value=0.053 Score=52.58 Aligned_cols=24 Identities=50% Similarity=0.297 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 459999999999999999998653
No 488
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.055 Score=53.24 Aligned_cols=24 Identities=50% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998653
No 489
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.28 E-value=0.055 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998653
No 490
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.28 E-value=0.053 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35999999999999999999854
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.26 E-value=0.058 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+|.|.|.+|+|||||+.+++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999998543
No 492
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.24 E-value=0.056 Score=49.09 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCCCCCchhHhHHhhhh
Q 010046 269 LAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~ 289 (519)
|+|+|++|+|||||+++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999843
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.20 E-value=0.058 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010046 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
--.++|+|+.|+|||||++.|.+.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999865
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.20 E-value=0.068 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+|+||||++++|....+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999985443
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.17 E-value=0.056 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEcCCCCCchhHhHHhhhhc
Q 010046 269 LAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~ 290 (519)
|+|+|.+|+|||||++.|.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998653
No 496
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.16 E-value=0.059 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999865
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.06 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 498
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.15 E-value=0.067 Score=50.81 Aligned_cols=22 Identities=45% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|+.|+|||||++.|.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999864
No 499
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.13 E-value=0.06 Score=47.22 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCchhHhHHhh
Q 010046 267 LNLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl 287 (519)
-.++|+|++|+|||||++.|.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 349999999999999999986
No 500
>PRK03839 putative kinase; Provisional
Probab=93.13 E-value=0.064 Score=50.51 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010046 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|.+|+||||+..+|....+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999975543
Done!