BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010048
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 291/422 (68%), Gaps = 4/422 (0%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + +S + VF APGNAG + + + V D A++ F + + L +
Sbjct: 13 REHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVA-IGVTDIPALLDFAQNEKIDLTI 71
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPLV G+ + AG+ FGP++ AA LEGSK F K+ ++ IPTA+Y+ FT+
Sbjct: 72 VGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDFLARHKIPTAEYQNFTEVE 131
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
A Y++E+GAPIV+KADGLAAGKGVIVAMTLEEA AV ML NAFG AG R++IEEF
Sbjct: 132 PALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRIVIEEF 191
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L+GEEASF +VDGE+ +P+ ++QDHKRVGD DTGPNTGGMGAYSPAPV+T ++ ME
Sbjct: 192 LDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTME 251
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
II PTVKGM+AEG + G LYAGLMI+K+ G PK+IE+N RFGD E Q +M+R++SDL
Sbjct: 252 RIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNPKVIEFNCRFGDLETQPIMLRMKSDLV 310
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E+ LAAC +L T W +++ VVMA+ GYPG Y G I L E+VA K+FH
Sbjct: 311 ELCLAACESKLDEKTSEWDERASLGVVMAAGGYPGDYRTGDVIHGL-PLEEVAGG-KVFH 368
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512
AGT L D + GGRVL VTA G V EAQ RAY + +I+W F R+DIGWRA+ +
Sbjct: 369 AGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIER 428
Query: 513 KQ 514
+Q
Sbjct: 429 EQ 430
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/418 (50%), Positives = 276/418 (66%), Gaps = 4/418 (0%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHAL + +S D ++ APGNAG + + D+ D +++F + +GL +
Sbjct: 14 REHALGWKAAQSPLADKIYVAPGNAGTALEPTLENV-DIAATDIAGLLAFAQSHDIGLTI 72
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPLV G+ + AG+ FGP+ AA LEGSK F K+ ++ IP+A+Y+ FTD
Sbjct: 73 VGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVE 132
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
AA Y++++GAPIV+KADGLAAGKGVIVA T EEA AV+ L NAFG AG R+++EEF
Sbjct: 133 AALAYVRQKGAPIVIKADGLAAGKGVIVAXTQEEAETAVNDXLAGNAFGDAGHRIVVEEF 192
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L+GEEASF VDGEN +P ++QDHKRVGDGDTGPNTGG GAYSPAPV+T ++ V +
Sbjct: 193 LDGEEASFIVXVDGENVLPXATSQDHKRVGDGDTGPNTGGXGAYSPAPVVTDDVHQRVXD 252
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I PTV+G +AEG + G LYAGL I G PK+IE+N RFGDPE Q + +R SDL
Sbjct: 253 QVIWPTVRGXAAEGNIYTGFLYAGLXI-SADGQPKVIEFNCRFGDPETQPIXLRXRSDLV 311
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E+ LA +G+L T +W ++ VV+A+ GYP Y +G I L + E K+FH
Sbjct: 312 ELCLAGTQGKLNEKTSDWDERPSLGVVLAAGGYPADYRQGDVIHGLPQQE--VKDGKVFH 369
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
AGT L+ + + GGRVL VTA G+ V +AQ AY E I W G F R+DIG+RA+
Sbjct: 370 AGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGYRAI 427
>pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase
From Ehrlichia Chaffeensis
Length = 442
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 287/418 (68%), Gaps = 7/418 (1%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REH++ + +++S + +F APG G+S D I D+D+ VI C+K + LVV
Sbjct: 32 REHSMLHHIRKSTLLNKLFIAPGREGMSGLAD---IIDIDINSTIEVIQVCKKEKIELVV 88
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
+GPE PL++GL++ L + GI FGPS AA LE SK F K LC +YGIPTAKY F D N
Sbjct: 89 IGPETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTN 148
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
+A ++I + P+VVKADGLA GKG ++ T EEAY AVD+ML+ + FG AGC +IIEEF
Sbjct: 149 SAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEF 208
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
LEG+E SFF LVDG N + L AQD+K +GD + GPNTGGMG+YS ++T+E++ ++++
Sbjct: 209 LEGKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQ 268
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
II PT+K M +F G+L+AG++I+K PKL+EYNVRFGDPE Q ++ RL SD
Sbjct: 269 KIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE--PKLLEYNVRFGDPETQSILPRLNSDFL 326
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
++L +G+L ++ S +A+ VV+AS+GYPG Y+K S I +E E++ P+V++ H
Sbjct: 327 KLLSLTAKGKLGNESVELSKKAALCVVVASRGYPGEYKKNSIINGIENIEKL-PNVQLLH 385
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
AGT + + N+++ GRV+ V A+G+++ A+ +AY A++ ++WP G YR DIG AL
Sbjct: 386 AGTRREGN-NWVSDSGRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIGSCAL 442
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/420 (48%), Positives = 285/420 (67%), Gaps = 11/420 (2%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHA+ + +S ++ APGN GI++ + I +LD+ +A++ F ++ ++ L +
Sbjct: 32 REHAIAWKAAQSPLVGKLYVAPGNPGIADVAELVHIDELDI---EALVQFAKQQAIDLTI 88
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPL SG+ ++ + G+ FGPS AA +EGSK F K L KYGIPTA + FT
Sbjct: 89 VGPEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYE 148
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
AK YI+++GAPIV+KADGLAAGKGV VA T+EEA A + L+ FG+AG +V+IEE+
Sbjct: 149 EAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEY 208
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
LEGEE SF A V+GE PL AQDHKR DGD GPNTGGMGAYSP P ++ E+ +E
Sbjct: 209 LEGEEFSFMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALE 268
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I+ P K ++AEG F+GVLYAGLM PK+IE+N RFGDPE QV++ RL++DL
Sbjct: 269 AILRPAAKALAAEGRPFLGVLYAGLMATANG--PKVIEFNARFGDPEAQVVLPRLKTDLV 326
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E +LA G+ + L W+ + + VV+A+KGYPG+YE+G+EI+ L ++++P +FH
Sbjct: 327 EAVLAVMDGK--ELELEWTDEAVLGVVLAAKGYPGAYERGAEIRGL---DRISPDALLFH 381
Query: 453 AGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512
AGT + G + GGRVL + AKG+ + +A+++AY + I+ G FYRRDIG RA+ +
Sbjct: 382 AGTKREG-GAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDCDGLFYRRDIGRRAIER 440
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/423 (50%), Positives = 269/423 (63%), Gaps = 13/423 (3%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REH L + +S + VF APGN G++ S I + D ++SF ++ VGL +
Sbjct: 11 REHTLAWKAAQSSLVENVFAAPGNDGMAASAQLVNIEESD---HAGLVSFAKQNQVGLTI 67
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPE PL+ GL ++ KAG+ FGPS AA +EGSK F K+L KY IPTA+Y+TFT +
Sbjct: 68 VGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFD 127
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
AK Y+QE+GAPIV+KADGLAAGKGV VAMT EEA + L FG A V+IEE+
Sbjct: 128 EAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEY 187
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L GEE S A V GE P+ AQDHKR DGD GPNTGGMGAYSP P +++E +E
Sbjct: 188 LSGEEFSLMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVE 247
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I+ P K M EG F GVLYAGLM+ + K+IE+N RFGDPE QV++ R+ESDL
Sbjct: 248 TIVKPAAKAMVQEGRSFTGVLYAGLMLTENGS--KVIEFNARFGDPETQVVLPRMESDLV 305
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNL-EEAEQVAPSVKIF 451
+VLL V L W +A+ VV+AS+GYP SY KG+ I +L E EQV +F
Sbjct: 306 QVLLDLLD--DKEVDLRWKDTAAVSVVLASEGYPESYAKGTPIGSLAAETEQVV----VF 359
Query: 452 HAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALP 511
HAGT + G F+ GGRV VTA + E A+DR Y AV+EI PG F+R+DIG RAL
Sbjct: 360 HAGTKAEG-GEFVTNGGRVANVTAFDETFEAARDRVYKAVDEIFKPGLFFRKDIGARALK 418
Query: 512 QKQ 514
Q
Sbjct: 419 AAQ 421
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/419 (46%), Positives = 269/419 (64%), Gaps = 11/419 (2%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHA+ + + +S ++ A GNAGI I DV + + F + V +
Sbjct: 11 REHAIAWKVAQSPLVKELYVAKGNAGIWEIAKRVDISPTDV---EKLAEFAKNEGVDFTI 67
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPLV G+ ++ K G+ FGP+ EAA LEGSK F K KYGIPTA+Y+ FTD
Sbjct: 68 VGPEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFE 127
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
AK+Y+++ GAPIVVKADGLAAGKG +V T+E+A E +D L K FG + RV+IEEF
Sbjct: 128 KAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEF 187
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
LEGEEAS+ +++G+ +PL ++QDHKR+ D D GPNTGGMGAYSP PV+ +E++ + E
Sbjct: 188 LEGEEASYIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIRE 247
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
I+ +KG+ EG + G LYAGLMI K+ PK++E+NVR GDPE Q +++R+++D
Sbjct: 248 EIVERVIKGLKEEGIYYRGFLYAGLMITKEG--PKVLEFNVRLGDPEAQPILMRVKNDFL 305
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFH 452
E LL G+ V + A+ VV+AS+GYP E G I L+ + + V +FH
Sbjct: 306 ETLLNFYEGK--DVHIKEDERYALDVVLASRGYPEKPETGKIIHGLDYLKSMEDVV-VFH 362
Query: 453 AGTALDADGNFIAT-GGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
AGT +GNF T GGRVL V A GK ++EA++RAY A+ + + G YR+DIG +A
Sbjct: 363 AGTK--KEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMHYRKDIGDKAF 419
>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
Length = 452
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/420 (46%), Positives = 269/420 (64%), Gaps = 8/420 (1%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REH L + L +SH V APGNAG + S + + + D A+ FC++ + VV
Sbjct: 35 REHTLAWKLAQSHHVKQVLVAPGNAGTACS-EKISNTAISISDHTALAQFCKEKKIEFVV 93
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPEAPL +G+ L AG+ FGP++EAA LE SK F K D++GIPTA++K FT P
Sbjct: 94 VGPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPE 153
Query: 213 AAKQYIQEEGAP-IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEE 271
A +I P +VVKA GLAAGKGVIVA + EEA +AV ++ + AFG+AG ++IEE
Sbjct: 154 EACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEE 213
Query: 272 FLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM 331
L+GEE S DG+ P+ AQDHKR+ +GD GPNTGGMGAY PAP ++ +L +
Sbjct: 214 LLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIK 273
Query: 332 ESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDL 391
++++ TV GM EG + G+LYAG+M+ K PK++E+N RFGDPECQV++ L+SDL
Sbjct: 274 DTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG--PKVLEFNCRFGDPECQVILPLLKSDL 331
Query: 392 AEVLLAACRGEL-TGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKI 450
EV+ + G L T + + +A+ VVMASKGYPG Y KG EI EA+ A +++
Sbjct: 332 YEVIQSTLDGLLCTSLPVWLENHTALTVVMASKGYPGDYTKGVEITGFPEAQ--ALGLEV 389
Query: 451 FHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
FHAGTAL +G + GGRVL VTA +++ A + A + I + G YR+DIG+RA+
Sbjct: 390 FHAGTALK-NGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKDIGFRAI 448
>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/423 (49%), Positives = 262/423 (61%), Gaps = 13/423 (3%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REH L + +S + VF APGN G + S I + D ++SF ++ VGL +
Sbjct: 11 REHTLAWKAAQSSLVENVFAAPGNDGXAASAQLVNIEESDHA---GLVSFAKQNQVGLTI 67
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
VGPE PL+ GL ++ KAG+ FGPS AA +EGSK F K+L KY IPTA+Y+TFT +
Sbjct: 68 VGPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLXKKYDIPTAEYETFTSFD 127
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
AK Y+QE+GAPIV+KADGLAAGKGV VA T EEA + L FG A V+IEE+
Sbjct: 128 EAKAYVQEKGAPIVIKADGLAAGKGVTVAXTEEEAIACLHDFLEDEKFGDASASVVIEEY 187
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L GEE S A V GE P AQDHKR DGD GPNTGG GAYSP P +++E +E
Sbjct: 188 LSGEEFSLXAFVKGEKVYPXVIAQDHKRAFDGDKGPNTGGXGAYSPVPQISEETVRHAVE 247
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+I+ P K EG F GVLYAGL + + K+IE+N RFGDPE QV++ R ESDL
Sbjct: 248 TIVKPAAKAXVQEGRSFTGVLYAGLXLTENGS--KVIEFNARFGDPETQVVLPRXESDLV 305
Query: 393 EVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNL-EEAEQVAPSVKIF 451
+VLL V L W +A+ VV+AS+GYP SY KG+ I +L E EQV +F
Sbjct: 306 QVLLDLLD--DKEVDLRWKDTAAVSVVLASEGYPESYAKGTPIGSLAAETEQVV----VF 359
Query: 452 HAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALP 511
HAGT + G F+ GGRV VTA + E A+DR Y AV+EI PG F+R+DIG RAL
Sbjct: 360 HAGTKAEG-GEFVTNGGRVANVTAFDETFEAARDRVYKAVDEIFKPGLFFRKDIGARALK 418
Query: 512 QKQ 514
Q
Sbjct: 419 AAQ 421
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
Length = 417
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/420 (45%), Positives = 260/420 (61%), Gaps = 20/420 (4%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGD--AVISFCRKWSVGL 150
REHAL + +S ++ APGNAG + +L +GD A+ + + L
Sbjct: 11 REHALLWKAAQSPRVKRLYAAPGNAGXE------ALAELVPWNGDVEALADWALAEGIDL 64
Query: 151 VVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTD 210
+VGPEAPLV G+A+ G+ FGP+ +AA +EGSK F K L ++YGIPTA+Y+ F +
Sbjct: 65 TLVGPEAPLVEGIADAFQARGLLLFGPTQKAAXIEGSKAFAKGLXERYGIPTARYRVFRE 124
Query: 211 PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270
P A Y++E G P+VVK GLAAGKGV VA L +A +AV ++L + + G V++E
Sbjct: 125 PLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNR----AEGGEVVVE 180
Query: 271 EFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVV 330
E+LEGEEA+ AL DGE +PL +QDHKR+ DGD GP TGG GA +P P L+ V
Sbjct: 181 EYLEGEEATVLALTDGETILPLLPSQDHKRLLDGDQGPXTGGXGAVAPYPXDEATLRR-V 239
Query: 331 MESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESD 390
E I+ P V+G+ AEG + GV+YAGL + ++ PK++E+N RFGDPE Q L+ LE+D
Sbjct: 240 EEEILGPLVRGLRAEGVVYRGVVYAGLXLTREG--PKVLEFNARFGDPEAQALLPLLEND 297
Query: 391 LAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKI 450
L E+ L G L G L+W G+A VV+A+ GYP S KG + E E V +
Sbjct: 298 LVELALRVAEGRLAGTRLSWKEGAAACVVLAAPGYPESPRKGIPLHVPEPPE----GVLV 353
Query: 451 FHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
FHAGT + G ++ GGRVL V G+D++EA +RAY + ++ +PG YRRDIG RAL
Sbjct: 354 FHAGTRREG-GRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGFPGAVYRRDIGRRAL 412
>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
pdb|1VKZ|B Chain B, Crystal Structure Of Phosphoribosylamine--Glycine Ligase
(Tm1250) From Thermotoga Maritima At 2.30 A Resolution
Length = 412
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 216/414 (52%), Gaps = 30/414 (7%)
Query: 93 REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152
REHA+ +A + V PGNAG D T P +G+ + + + V+
Sbjct: 26 REHAIGWAFAKQGY--EVHFYPGNAGTKR--DGTNHP----YEGEKTLKAIPEEDI--VI 75
Query: 153 VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212
G E LV G++N FGP E A LEGSK + K KYGI TA+++ P
Sbjct: 76 PGSEEFLVEGVSNWRSN----VFGPVKEVARLEGSKVYAKRFXKKYGIRTARFEVAETPE 131
Query: 213 AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEF 272
++ I++ P V+KADGLA GKGV++ + EE E +++ V+I+EF
Sbjct: 132 ELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEF 191
Query: 273 LEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVME 332
L G E S A+V+G N + L +D+KR+ DGD GPNTGG G++ P + + ++ + E
Sbjct: 192 LAGNELSAXAVVNGRNFVILPFVRDYKRLXDGDRGPNTGGXGSWGPVEIPSDTIKKI--E 249
Query: 333 SIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392
+ T+ G+ EG + G LY GL + G P ++EYNVR GDPE +V++
Sbjct: 250 ELFDKTLWGVEKEGYAYRGFLYLGLXLH--DGDPYILEYNVRLGDPETEVIVTLNPEGFV 307
Query: 393 EVLLAACRGELTGVTLNWSP-GSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIF 451
+L RG G P G A+ VV+A++GYP + EKG EI EE IF
Sbjct: 308 NAVLEGYRG---GKXEPVEPRGFAVDVVLAARGYPDAPEKGKEITLPEEG-------LIF 357
Query: 452 HAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDI 505
AG A + DG + GGRVL G+ EEA+ +AY E++++ G YRRDI
Sbjct: 358 FAGVA-EKDGKLVTNGGRVLHCXGTGETKEEARRKAYELAEKVHFEGKTYRRDI 410
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 176 GPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAG 235
G + EAA G K K KY + TA++ + N K ++ P++VKA L
Sbjct: 98 GLNEEAAIXCGDKYKXKEAFKKYNVNTARHFVVRNENELKNALENLKLPVIVKATDLQGS 157
Query: 236 KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEE 277
KG+ +A EEA + + N C I+EEF+EG E
Sbjct: 158 KGIYIAKKEEEAIDGFNET--XNLTKRDYC--IVEEFIEGYE 195
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGK----GVIVAMTLEEA 247
K + +YG+P K P AK+ +E G +V+KA G+ GV +A T +EA
Sbjct: 9 KEILARYGVPVPPGKVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEA 68
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALV 284
YE ++L N G +V++ E ++ + + L+
Sbjct: 69 YEKAQAILGMNIKGLTVKKVLVAEAVDIAKEYYAGLI 105
>pdb|3LN6|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Streptococcus Agalactiae
Length = 750
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYI-QEEGAPIVVKADGLAAGKGVIVAMT- 243
+K K + D+ PT FTD A Y Q + PIVVK G G+ + T
Sbjct: 483 ANKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTS 542
Query: 244 --LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRV 301
L +A+D AF + +++EE++EG E FF L A+ L A + V
Sbjct: 543 ANLASYEKAIDI-----AF-TEDSAILVEEYIEGTEYRFFVLEGDCIAVLLRVAAN--VV 594
Query: 302 GDG 304
GDG
Sbjct: 595 GDG 597
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 132 DVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFM 191
+ LD A++ F GL +V E V A + ++ +P + P A ALE +++ +
Sbjct: 46 EFLDEGALLRFAE----GLALVTYEFENVPVEAARRLEGRLPLYPP---AKALEVAQDRL 98
Query: 192 --KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-DGLAAGKGVIVAMTLEEAY 248
K G+PT + P ++ ++ G P ++K G GKG + T EEA
Sbjct: 99 REKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEAL 158
Query: 249 EAVDSM 254
EA+ ++
Sbjct: 159 EALKAL 164
>pdb|3VMM|A Chain A, Crystal Structure Of Bacd, An L-Amino Acid Dipeptide
Ligase From Bacillus Subtilis
Length = 474
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 176 GPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAG 235
G +AA KN M++ +K G+ + K K T + ++E G P+++K LA+
Sbjct: 128 GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGTPLILKPTYLASS 187
Query: 236 KGVIVAM---TLEEAYEAVDSMLLKNAFGSA---GCRVIIEEFLEGEEASFF 281
GV + T E+ + V+ L A I EEFL+GE ++
Sbjct: 188 IGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWY 239
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 152 VVGPEAPLVSGLANKLVK-AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTD 210
VV P V+ L +LV+ +P FG + E +N + K GI + + D
Sbjct: 65 VVVPTGSFVAHLGIELVENMKVPYFG-NKRVLRWESDRNLERKWLKKAGIRVPE--VYED 121
Query: 211 PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSML 255
P+ ++ P++VK G GKG +A E+ + + L
Sbjct: 122 PDDIEK-------PVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFL 159
>pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
Length = 373
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 170 AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAA--KQYIQEEGAPIVV 227
AG+P G A+A+ K F K L G+P Y P + +Q + G P+ V
Sbjct: 134 AGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFV 193
Query: 228 K 228
K
Sbjct: 194 K 194
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 149 GLVVVGPEAPLVSGLANKLVK------AGIPTFGPSSEAAALEGSKN-FMKNLCDKYGIP 201
G+ +GP + + L +K+ AGIPT S ++ +N F K + + +P
Sbjct: 149 GIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILN---VP 205
Query: 202 TAKYKT--FTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238
Y+ D + Q +E G P+++KA GKG+
Sbjct: 206 QELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGI 244
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 94 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 150
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 151 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 207
Query: 275 G 275
Sbjct: 208 N 208
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 94 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 150
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 151 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 207
Query: 275 G 275
Sbjct: 208 N 208
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 117 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 173
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 174 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 230
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 117 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 173
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 174 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 230
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 94 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 150
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 151 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 207
Query: 275 G 275
Sbjct: 208 N 208
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 117 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 173
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 174 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 230
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT-----AKYKTFTDPNAAKQY 217
A + + GI GP E + G K + K +P K++ AK++
Sbjct: 117 FARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY---ELAKEF 173
Query: 218 IQEEGAPIVVKADGLAAGKGVIVAM---TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274
+E G P+++KA GKG+ + LE+A+ S K +FG++ V IE +++
Sbjct: 174 AEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEK-SFGNS--EVYIERYID 230
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 183 ALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ--EEGAPIVVKADGLAAGKGVIV 240
ALE + + LC +G+ A+ + KQ ++ + P++ +A GL + V +
Sbjct: 204 ALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAI 263
Query: 241 AMTL--EEAYEAVDSML 255
A + ++A E V +L
Sbjct: 264 ASNIGGKQALETVQRLL 280
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT---AKYKTFTDPNAAKQYIQ 219
A ++ ++G GP++E L G K K+ + G+PT + D A +
Sbjct: 91 FAEQIERSGFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAR 150
Query: 220 EEGAPIVVKA 229
E G P+++KA
Sbjct: 151 EVGYPVIIKA 160
>pdb|2GNO|A Chain A, Crystal Structure Of A Dna Polymerase Iii, Gamma
Subunit-Related Protein (Tm0771) From Thermotoga
Maritima Msb8 At 2.00 A Resolution
Length = 305
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 198 YGIPTAKYKTF----TDPNAAKQYIQE------EGAPIV-------VKADGLAAGK--GV 238
Y +PT K + F P + ++E E P++ ++A L A K G+
Sbjct: 124 YLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGL 183
Query: 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD 285
++ + E + + +L K G CR ++E F + E FFAL D
Sbjct: 184 XESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFD 230
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Query: 137 DAVISFCRKWSVGLVVVGPEAPLVSGL-ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC 195
D ++ CR+ +G+V P +P+ GL A K +K +P + G +N KN
Sbjct: 189 DEIVPLCRQLGIGIV---PYSPIGRGLFAGKAIKESLPENSVLTSHPRFVG-ENLEKNKQ 244
Query: 196 DKYGIPTAKYKTFTDP-NAAKQYIQEEGAPIV-----VKADGLAAGKGVI-VAMTLEEAY 248
Y I K P A ++ +G +V K L G + V +T E+
Sbjct: 245 IYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNVGALKVKLTKEDLK 304
Query: 249 EAVDSMLLKNAFGSAGCRVI 268
E D++ L G + VI
Sbjct: 305 EISDAVPLDEVAGESIHEVI 324
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY---------KTFTDPNA 213
L L G+P G A+AL K K L G+P A + K +D
Sbjct: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL 131
Query: 214 AKQYIQEEGAPIVVK--ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEE 271
A+ I G P++VK +G + G +VA E A + L+ AF V+IE+
Sbjct: 132 AE--ISALGLPVIVKPSREGSSVGMSKVVA---ENALQDA----LRLAF-QHDEEVLIEK 181
Query: 272 FLEGEEASFFALVDGENAIP 291
+L G E F + GE +P
Sbjct: 182 WLSGPE--FTVAILGEEILP 199
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY---------KTFTDPNA 213
L L G+P G A+AL K K L G+P A + K +D
Sbjct: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL 131
Query: 214 AKQYIQEEGAPIVVK--ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEE 271
A+ I G P++VK +G + G +VA E A + L+ AF V+IE+
Sbjct: 132 AE--ISALGLPVIVKPSREGSSVGMSKVVA---ENALQDA----LRLAF-QHDEEVLIEK 181
Query: 272 FLEGEEASFFALVDGENAIP 291
+L G E F + GE +P
Sbjct: 182 WLSGPE--FTVAILGEEILP 199
>pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BI4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
pdb|2BL4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
Coli
Length = 392
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 469 RVLGVTAKGKDVEEAQDRAYLAVEEINWPGGF--YRRDIGWR 508
RV+GV +G +EEA++ A AV +N G + RD+G R
Sbjct: 314 RVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVR 355
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 169 KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQEEGAPIV 226
K I GPS EA L K+ K + + G+P AAK+ +E G P++
Sbjct: 101 KHNIKFIGPSVEAXNLXSDKSKAKQVXQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVI 160
Query: 227 VKADGLAAGKGVIVAMT---LEEAYEAVDS 253
+KA G+G V LE+AY + +S
Sbjct: 161 LKAAAGGGGRGXRVVENEKDLEKAYWSAES 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,503,077
Number of Sequences: 62578
Number of extensions: 657959
Number of successful extensions: 1986
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1901
Number of HSP's gapped (non-prelim): 85
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)