RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010048
(519 letters)
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 211 bits (538), Expect = 3e-66
Identities = 139/224 (62%), Positives = 173/224 (77%), Gaps = 1/224 (0%)
Query: 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEE 246
SK F K+ ++ IPTA+Y+ FT+ A Y++E+GAPIV+KADGLAAGKGVIVAMTLEE
Sbjct: 1 SKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEE 60
Query: 247 AYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDT 306
A AV ML NAFG AG R++IEEFL+GEEASF +VDGE+ +P+ ++QDHKRVGD DT
Sbjct: 61 AEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKDT 120
Query: 307 GPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLP 366
GPNTGGMGAYSPAPV+T ++ ME II PTVKGM+AEG + G LYAGLMI+K+ G P
Sbjct: 121 GPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQ-GNP 179
Query: 367 KLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNW 410
K+IE+N RFGD E Q +M+R++SDL E+ LAAC +L T W
Sbjct: 180 KVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESKLDEKTSEW 223
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 159 bits (401), Expect = 3e-46
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 4/216 (1%)
Query: 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEE 246
SK + K KYGI TA+++ P ++ I++ P V+KADGLA GKGV++ + EE
Sbjct: 1 SKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEE 60
Query: 247 AYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDT 306
E +++ V+I+EFL G E S A+V+G N + L +D+KR+ DGD
Sbjct: 61 TIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDR 120
Query: 307 GPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLP 366
GPNTGGMG++ P + + +E + T+ G+ EG + G LY GLM+ P
Sbjct: 121 GPNTGGMGSWGPVEIPSD--TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD--P 176
Query: 367 KLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402
++EYNVR GDPE +V++ +L RG
Sbjct: 177 YILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG 212
>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase
(GAR-syn), C-domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 113 bits (284), Expect = 6e-31
Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 414 SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGV 473
+++ VVMA+ GYPG Y G I L E K+FHAGT L D + GGRVL V
Sbjct: 3 ASLGVVMAAGGYPGDYRTGDVIHGLPLEE--VAGGKVFHAGTKLADDEQVVTNGGRVLCV 60
Query: 474 TAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRAL 510
TA G V EAQ RAY + +I+W F R+DIGWRA+
Sbjct: 61 TALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAI 97
>d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase
(GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]}
Length = 86
Score = 101 bits (254), Expect = 6e-27
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 413 GSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLG 472
G A+ VV+A++GYP + EKG EI IF AG A DG + GGRVL
Sbjct: 1 GFAVDVVLAARGYPDAPEKGKEITLP-------EEGLIFFAGVAEK-DGKLVTNGGRVLH 52
Query: 473 VTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDI 505
G+ EEA+ +AY E++++ G YRRDI
Sbjct: 53 CMGTGETKEEARRKAYELAEKVHFEGKTYRRDI 85
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase
(GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Length = 105
Score = 101 bits (253), Expect = 1e-26
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
VLVIG GGREHAL + +S + VF APGNAG + + V D A++ F +
Sbjct: 5 VLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQNVAI-GVTDIPALLDFAQ 63
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186
+ L +VGPEAPLV G+ + AG+ FGP++ AA LEG
Sbjct: 64 NEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLEG 105
>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase
(GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 90
Score = 88.0 bits (218), Expect = 6e-22
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR 144
V ++G GGREHA+ +A + V PGNAG D T P + +
Sbjct: 3 VHILGSGGREHAIGWAFAKQGYE--VHFYPGNAGTKR--DGTNHPY------EGEKTLKA 52
Query: 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEG 186
+V+ G E LV G++N FGP E A LEG
Sbjct: 53 IPEEDIVIPGSEEFLVEGVSNWR----SNVFGPVKEVARLEG 90
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 75.0 bits (184), Expect = 1e-15
Identities = 50/305 (16%), Positives = 87/305 (28%), Gaps = 42/305 (13%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAV 251
K G+ TA+ A + G P +++ G G +A EE E
Sbjct: 6 DVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEIC 65
Query: 252 DSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNT 310
+ S ++I+E L G +E + D + G +T
Sbjct: 66 A----RGLDLSPTKELLIDESLIGWKEYEMEVVRDKND----NCIIVCSIENFDAMGIHT 117
Query: 311 GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIE 370
G +PA LT + ++ + ++ + G + G + PK
Sbjct: 118 GDSITVAPAQTLTDKEYQIMRNA----SMAVLREIGVETGGSNVQFAV------NPKNGR 167
Query: 371 YNVRFGDPECQVLMVRLE----SDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYP 426
V +P +A+V G TL+ + P
Sbjct: 168 LIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGY----TLDELMNDITGGRTPASFEP 223
Query: 427 GSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLG-VTAKGKDVEEAQD 485
I + K A L T + +G V A G+ +E+
Sbjct: 224 -------SIDYVVTKIPRFNFEKFAGANDRLT-------TQMKSVGEVMAIGRTQQESLQ 269
Query: 486 RAYLA 490
+A
Sbjct: 270 KALRG 274
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 70.9 bits (173), Expect = 1e-14
Identities = 27/202 (13%), Positives = 56/202 (27%), Gaps = 23/202 (11%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
++ L + G+ K + ++ ++VK G G+G +A + EE
Sbjct: 2 RSLEGKLLREAGLRVPK---------KYESPEDIDGTVIVKFPGARGGRGYFIASSTEEF 52
Query: 248 YEAVDSMLLKNAFGSAGCR-VIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD- 305
Y+ + + + IEE++ G D + + D
Sbjct: 53 YKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDG 112
Query: 306 -----------TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLY 354
N + + V+ + L V E K +G
Sbjct: 113 LVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFC 172
Query: 355 AGLMIEKKSGLPKLIEYNVRFG 376
+ + + E + R
Sbjct: 173 LQSLCNEN-LELVVFEMSARVD 193
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 66.1 bits (160), Expect = 6e-13
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 24/201 (11%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
+N + K GI + + + P++VK G GKG +A E+
Sbjct: 2 RNLERKWLKKAGIRVPE---------VYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDF 52
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD-- 305
+ + L + I+E++ G + D + + D
Sbjct: 53 WRKAEKF-LGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAI 111
Query: 306 ----------TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYA 355
+ + VL + L + VK G
Sbjct: 112 GRIPAKDQLEFDMDITYTVIGNIPIVLRESLLM-DVIEAGERVVKAAEELMGGLWGPFCL 170
Query: 356 GLMIEKKSGLPKLIEYNVRFG 376
+ + E + R
Sbjct: 171 EGVF-TPDLEFVVFEISARIV 190
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 58.4 bits (140), Expect = 2e-10
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
K K G+P K TD A + ++ G P+V+K + G+ +
Sbjct: 1 KWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXX 60
Query: 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIP 291
+ F I+E++E V GE AI
Sbjct: 61 XXXXXXKEVLGGFQHQ--LFYIQEYVEKPGRDIRVFVVGERAIA 102
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 52.7 bits (126), Expect = 3e-08
Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAV 251
++ ++ + T T A + +E G P+VV+A + G+ + + +
Sbjct: 3 QHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYF 62
Query: 252 DSMLLKNAFGSAGCRVIIEEFLEGE-EASFFALVDGENAIPLESAQDHKRVGDGDTGPNT 310
+ S V+++ FL+ E A+ DGE + + ++ G ++
Sbjct: 63 QTA----VSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQ-----AGVHS 113
Query: 311 GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIE 370
G PA L++E+Q V+ + + A + G++ + K+ LIE
Sbjct: 114 GDSACSLPAYTLSQEIQDVMRQQVQ------KLAFELQVRGLMNVQFAV--KNNEVYLIE 165
Query: 371 YNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNW 410
N R V LA+V G+
Sbjct: 166 VNPRAARTVPFVSKA-TGVPLAKVAARVMAGKSLAEQGVT 204
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 48.3 bits (114), Expect = 6e-07
Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 23/228 (10%)
Query: 188 KNFMKNLCDKYGIPTAK--YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLE 245
K K + K G+P AK +E G P+++KA G+G+ + E
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 246 EAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE--NAIPLESAQDHKRVGD 303
E + + + +++E+F+E + + ++ + N I L
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHL----------- 109
Query: 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK-- 361
G + + V + E A K +G AG M
Sbjct: 110 ---GERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKA--AKEIGYYNAGTMEFIAD 164
Query: 362 KSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLN 409
+ G IE N R E V + D+ + + GE +
Sbjct: 165 QEGNLYFIEMNTRIQV-EHPVSEMVTGIDIVKWQIKIAAGEPLTIKQE 211
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 44.6 bits (104), Expect = 9e-06
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 12/194 (6%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFT----DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT 243
K K L GI KY + + + + E G + VKA + G+
Sbjct: 2 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN 61
Query: 244 LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQ-DHKRVG 302
EE EA+ + V LE + E Q
Sbjct: 62 AEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWY 121
Query: 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKK 362
D + + L+ E+ V + + + + G ++ +
Sbjct: 122 DYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMAL------DAYKVLNLRGEARMDFLL-DE 174
Query: 363 SGLPKLIEYNVRFG 376
+ +P L E N G
Sbjct: 175 NNVPYLGEPNTLPG 188
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 43.9 bits (102), Expect = 1e-05
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 190 FMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYE 249
+ ++ +PT+ Y+ + ++ + + G P +VK ++GKG + E+ +
Sbjct: 5 IRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 64
Query: 250 AVDSM 254
A
Sbjct: 65 AWKYA 69
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 40.5 bits (93), Expect = 2e-04
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229
K+ + GI T + + P+ VK
Sbjct: 2 KSLTYIVAKNAGIATPAFWVIN--KDDRPVAATFTYPVFVKP 41
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 39.9 bits (92), Expect = 4e-04
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK-----ADGLAAGKGVIVAMTLEE 246
K L +YG+P T P A++ + GA V A G GV V + E+
Sbjct: 9 KQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68
Query: 247 AYEAVDSMLLKN 258
++ L K
Sbjct: 69 IRAFAENWLGKR 80
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 39.3 bits (90), Expect = 4e-04
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247
+ K L DK +PTA ++ + + G +VK + E
Sbjct: 2 RLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANET 61
Query: 248 YEA 250
+
Sbjct: 62 EQL 64
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 39.2 bits (90), Expect = 6e-04
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 192 KNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVV-KADGLAAGKGVIVAMTLEEAY 248
K L G+ ++ N A + + A +V KA LA G+G V + +
Sbjct: 10 KKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGG 67
>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide
transformylase PurT, C-domain {Escherichia coli [TaxId:
562]}
Length = 74
Score = 33.6 bits (77), Expect = 0.006
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 414 SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGV 473
+A V++ + N++ A +++F G G R LGV
Sbjct: 3 AASAVILPQL-----TSQNVTFDNVQNAVGADLQIRLF---------GKPEIDGSRRLGV 48
Query: 474 -TAKGKDVEEAQDRAYLAVEEI 494
A + V +A +RA A ++
Sbjct: 49 ALATAESVVDAIERAKHAAGQV 70
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 34.3 bits (77), Expect = 0.022
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-------GAPIVVKADGLAAGK 236
K K L G+P A + T K ++ G P++VK +
Sbjct: 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 56
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 30.1 bits (67), Expect = 0.67
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 23 FQFQKPFASSNNLRFSVGPNFSISFNPQGSKSSFFSTVKCLAQKSQPSVSVNAPTNA-GQ 81
+K +N + + P S N + + S + + K P
Sbjct: 541 LPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLY-----IDPKITRGSHTRKPKRQSYN 595
Query: 82 RVVVLVIGGGGR-EHALCYALKRS 104
+ +V V+GGG E+ S
Sbjct: 596 KSLVFVVGGGNYLEYQNLQEWAHS 619
>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 309
Score = 29.9 bits (67), Expect = 0.77
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDG-ENAIPLESAQD 297
I A + +E S+L + G+ F + + VDG EN E+
Sbjct: 105 IRAKQMGLCFEFA-SILDEKLKGAVVSVDETHGFRYMDGKAIIGFVDGTENPAVDENPYH 163
Query: 298 HKRVGDGDTG 307
+G+ D
Sbjct: 164 FAVIGEEDAD 173
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus
thermophilus [TaxId: 274]}
Length = 80
Score = 27.5 bits (61), Expect = 1.1
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 457 LDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493
+ + + + GV A GK ++E + A+E+
Sbjct: 21 IADEEPYYGEIPDLPGVWATGKSLKECEANLQAALED 57
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 29.3 bits (65), Expect = 1.4
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 30 ASSNNLRFSVGPNFSISFNPQGSKSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIG 89
+ L P S + S ++ + + P +G R+++ ++G
Sbjct: 486 TIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPG-----EYRSGPRLIIFILG 540
Query: 90 GGGR-EHALCYALKRSHS 106
G E Y + +++
Sbjct: 541 GVSLNEMRCAYEVTQANG 558
>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 100
Score = 27.4 bits (61), Expect = 1.4
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 39 VGPNFSISFNPQGSKSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALC 98
V F S P S ++ V + ++ ++ ++ C
Sbjct: 9 VFHYFENSSEPTTW----ASIIRH---GDATDV---------RGIIQKIVDCHKVKNVAC 52
Query: 99 YALKRSH 105
Y L+ SH
Sbjct: 53 YGLRLSH 59
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 27.7 bits (61), Expect = 1.5
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 133 VLDGDAVISFCRKWSVGLVVVGPEAPLVS-GLANKLVKAGIPTFGPSSEAAALEG 186
L+ A+IS + G + A ++ ++G GP +E L G
Sbjct: 60 YLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 28.4 bits (62), Expect = 1.8
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 189 NFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQE 220
NF K L G+P +Y + I+
Sbjct: 150 NFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 181
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima
[TaxId: 2336]}
Length = 98
Score = 26.9 bits (59), Expect = 2.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 257 KNAFGSAGCRVIIEEFLEGEEASFFALVD 285
K G CR ++E F + E FFAL D
Sbjct: 1 KGLEGYLACRELLERFSKVESKEFFALFD 29
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 27.7 bits (61), Expect = 3.5
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 47 FNPQGSKSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGR-EHALCYALKRS 104
N G + S V A +G R+++ V+GG E Y + ++
Sbjct: 503 LNGGGPRPSCQQPVSVRYGHWHKDKG-QASYKSGPRLIIFVVGGISYSEMRSAYEVTQT 560
>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId:
1905]}
Length = 260
Score = 27.3 bits (59), Expect = 5.0
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 76 PTNAGQR---VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLD 132
PT+ VV+ G + ++ + R S V + D+ L
Sbjct: 44 PTSTADGTFGAVVISPGFTAYQSSIAWLGPRLASQGFVVFTIDTNTTLDQPDSRGRQLLS 103
Query: 133 VLD 135
LD
Sbjct: 104 ALD 106
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 321
Score = 27.0 bits (60), Expect = 5.3
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 29 FASSNNL-RFSVGPNFSISFN----------PQGSKSSFFSTVKCLAQKSQ--PSVSVNA 75
+S+N+ + + P S S + P +SSFF V L +K+ P++ +
Sbjct: 105 LSSTNHFEKIRIIPRSSWSNHDASSGVSSACPYNGRSSFFRNVVWLIKKNNAYPTIKRSY 164
Query: 76 PTNAGQRVVVL 86
+ +++L
Sbjct: 165 NNTNQEDLLIL 175
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 26.6 bits (59), Expect = 6.7
Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 29 FASSNNL-RFSVGPNFSISFNPQGS----KSSFFSTVKCLAQKSQPSVSVNAPTNAGQRV 83
F+S+++ R + P+ + + G+ SF+ +++ L QK+ +A +
Sbjct: 105 FSSASSYQRIQIFPDTIWNVSYSGTSSACSDSFYRSMRWLTQKNNAYPIQDAQYTNNRGK 164
Query: 84 VVLVIGG 90
+L + G
Sbjct: 165 SILFMWG 171
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
cardiophyllum) [TaxId: 160510]}
Length = 360
Score = 26.9 bits (58), Expect = 7.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 80 GQRVVVLVIGGGG 92
G+ V VL I GGG
Sbjct: 2 GEMVTVLSIDGGG 14
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 320
Score = 26.3 bits (58), Expect = 8.7
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 49 PQGSKSSFFSTVKCLAQKSQ--PSVSVNAPTNAGQRVVVL 86
+G S FFS + L + P ++V P N + +
Sbjct: 132 KRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYI 171
>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
{Shewanella oneidensis [TaxId: 70863]}
Length = 306
Score = 26.4 bits (58), Expect = 9.1
Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 1/67 (1%)
Query: 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDH 298
+ + + + + + F + VDG Q+
Sbjct: 102 LRCDRYDILHLVA-NEISQMFEDLVELVEEERGFRFMDSRDLTGFVDGTENPKGRHRQEV 160
Query: 299 KRVGDGD 305
VG D
Sbjct: 161 ALVGSED 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,903,693
Number of extensions: 91388
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 36
Length of query: 519
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,185,626
Effective search space: 509819180
Effective search space used: 509819180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.9 bits)