Query 010049
Match_columns 519
No_of_seqs 226 out of 1574
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 6E-150 1E-154 1177.7 43.1 472 44-517 29-509 (524)
2 PLN02849 beta-glucosidase 100.0 8E-137 2E-141 1107.1 47.2 458 45-518 23-484 (503)
3 PLN02998 beta-glucosidase 100.0 2E-136 4E-141 1103.0 45.9 461 44-517 23-488 (497)
4 PLN02814 beta-glucosidase 100.0 3E-136 6E-141 1103.1 44.9 456 47-518 23-484 (504)
5 PRK13511 6-phospho-beta-galact 100.0 3E-132 6E-137 1069.2 44.8 449 50-518 3-467 (469)
6 TIGR01233 lacG 6-phospho-beta- 100.0 2E-131 5E-136 1059.6 45.3 443 51-518 3-465 (467)
7 PF00232 Glyco_hydro_1: Glycos 100.0 8E-132 2E-136 1065.0 33.4 447 50-518 3-454 (455)
8 PRK09593 arb 6-phospho-beta-gl 100.0 3E-130 7E-135 1053.1 44.8 444 50-518 4-474 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 3E-129 6E-134 1045.2 44.6 443 51-518 3-473 (476)
10 COG2723 BglB Beta-glucosidase/ 100.0 2E-129 3E-134 1017.4 39.3 445 50-518 2-454 (460)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-128 7E-133 1036.1 45.5 445 48-518 2-474 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 6E-128 1E-132 1032.8 45.6 443 51-518 3-470 (474)
13 TIGR03356 BGL beta-galactosida 100.0 3E-125 6E-130 1004.5 41.4 427 52-510 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 9.2E-13 2E-17 131.9 24.5 250 127-509 2-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 2.8E-12 6.1E-17 135.3 7.9 109 105-217 10-141 (374)
16 PF07745 Glyco_hydro_53: Glyco 99.1 2E-08 4.2E-13 103.9 22.3 251 108-476 27-297 (332)
17 PF00150 Cellulase: Cellulase 99.0 6.5E-10 1.4E-14 111.2 9.1 109 106-217 22-134 (281)
18 PRK10150 beta-D-glucuronidase; 99.0 6.2E-08 1.3E-12 108.6 25.0 263 105-516 313-594 (604)
19 PF00331 Glyco_hydro_10: Glyco 99.0 4.6E-08 9.9E-13 101.3 20.4 268 125-512 43-318 (320)
20 COG1874 LacA Beta-galactosidas 98.8 1.4E-08 3E-13 113.0 7.7 119 106-228 31-176 (673)
21 COG3693 XynA Beta-1,4-xylanase 98.7 3.6E-06 7.8E-11 85.3 22.2 269 127-515 68-342 (345)
22 PF01229 Glyco_hydro_39: Glyco 98.7 3.8E-07 8.2E-12 99.7 15.1 291 106-512 40-358 (486)
23 COG3867 Arabinogalactan endo-1 98.0 0.0041 9E-08 62.7 24.1 301 50-493 33-361 (403)
24 COG2730 BglC Endoglucanase [Ca 97.4 0.0004 8.7E-09 74.4 8.4 109 108-216 76-193 (407)
25 PF01301 Glyco_hydro_35: Glyco 97.2 0.001 2.3E-08 69.0 8.0 109 106-215 25-151 (319)
26 PLN03059 beta-galactosidase; P 96.7 0.015 3.3E-07 66.7 12.4 110 105-216 59-189 (840)
27 PF01373 Glyco_hydro_14: Glyco 96.6 0.0031 6.8E-08 66.6 5.7 106 104-215 15-151 (402)
28 PF14587 Glyco_hydr_30_2: O-Gl 96.6 0.014 3.1E-07 61.5 10.3 100 115-215 57-184 (384)
29 PLN02803 beta-amylase 96.4 0.012 2.6E-07 63.9 8.9 107 105-216 107-252 (548)
30 PLN00197 beta-amylase; Provisi 96.4 0.014 3E-07 63.5 8.9 107 105-216 127-272 (573)
31 PLN02161 beta-amylase 96.2 0.024 5.2E-07 61.3 9.6 111 101-216 113-262 (531)
32 PLN02801 beta-amylase 96.2 0.025 5.4E-07 61.2 9.7 107 105-215 37-182 (517)
33 PF02836 Glyco_hydro_2_C: Glyc 95.9 0.038 8.3E-07 56.5 9.3 93 103-214 34-132 (298)
34 PLN02705 beta-amylase 95.8 0.035 7.6E-07 61.1 8.7 109 103-215 266-413 (681)
35 PF11790 Glyco_hydro_cc: Glyco 95.7 0.062 1.3E-06 53.5 9.6 67 404-480 151-217 (239)
36 PLN02905 beta-amylase 95.5 0.037 7.9E-07 61.1 7.7 101 101-204 282-421 (702)
37 PF13204 DUF4038: Protein of u 95.1 0.13 2.9E-06 52.6 10.1 103 107-214 32-156 (289)
38 PF14488 DUF4434: Domain of un 94.4 0.23 4.9E-06 46.8 8.8 103 105-215 20-131 (166)
39 KOG0496 Beta-galactosidase [Ca 93.5 0.46 9.9E-06 53.1 10.2 109 106-215 50-176 (649)
40 PRK09525 lacZ beta-D-galactosi 92.6 0.36 7.8E-06 57.8 8.5 91 103-215 369-464 (1027)
41 PRK10340 ebgA cryptic beta-D-g 91.0 0.7 1.5E-05 55.4 8.6 90 103-214 353-450 (1021)
42 COG3250 LacZ Beta-galactosidas 90.0 1.2 2.6E-05 51.9 9.0 90 101-215 317-408 (808)
43 COG3934 Endo-beta-mannanase [C 89.3 0.15 3.2E-06 54.8 0.9 109 107-216 28-150 (587)
44 PF02836 Glyco_hydro_2_C: Glyc 83.4 1.5 3.3E-05 44.7 4.7 101 403-515 183-294 (298)
45 COG3664 XynB Beta-xylosidase [ 82.9 2.3 5.1E-05 45.2 5.7 99 114-217 14-117 (428)
46 PF07488 Glyco_hydro_67M: Glyc 78.1 17 0.00036 37.5 9.8 87 104-203 56-150 (328)
47 PF03198 Glyco_hydro_72: Gluca 77.9 7.9 0.00017 40.1 7.5 90 106-214 54-145 (314)
48 smart00642 Aamy Alpha-amylase 77.2 4.8 0.0001 37.8 5.4 63 103-165 17-90 (166)
49 PF00332 Glyco_hydro_17: Glyco 75.1 4.9 0.00011 41.7 5.3 83 405-496 211-302 (310)
50 PF12891 Glyco_hydro_44: Glyco 69.5 18 0.00038 36.1 7.4 71 145-218 24-139 (239)
51 PF10566 Glyco_hydro_97: Glyco 69.1 21 0.00046 36.3 8.1 119 78-200 9-149 (273)
52 PRK05799 coproporphyrinogen II 63.6 15 0.00032 38.8 6.1 103 107-225 98-203 (374)
53 cd07945 DRE_TIM_CMS Leptospira 63.1 45 0.00098 34.0 9.3 64 108-171 77-141 (280)
54 cd03174 DRE_TIM_metallolyase D 60.7 24 0.00052 34.9 6.7 82 108-202 77-159 (265)
55 PF00128 Alpha-amylase: Alpha 60.2 7.1 0.00015 38.9 2.8 57 108-166 7-73 (316)
56 PRK12313 glycogen branching en 60.2 25 0.00055 40.0 7.5 100 104-211 169-309 (633)
57 cd07939 DRE_TIM_NifV Streptomy 59.3 27 0.00059 34.9 6.9 58 108-165 72-130 (259)
58 TIGR02090 LEU1_arch isopropylm 58.9 24 0.00052 37.3 6.7 60 107-166 73-133 (363)
59 cd06543 GH18_PF-ChiA-like PF-C 58.4 40 0.00087 34.7 8.0 78 112-202 19-104 (294)
60 PRK05402 glycogen branching en 58.0 31 0.00068 40.0 7.9 100 104-211 264-404 (726)
61 PLN02361 alpha-amylase 57.9 22 0.00047 38.3 6.1 66 102-167 26-100 (401)
62 PF02638 DUF187: Glycosyl hydr 56.9 45 0.00098 34.5 8.1 98 104-202 18-154 (311)
63 TIGR02402 trehalose_TreZ malto 56.5 36 0.00078 38.1 7.8 92 104-202 110-237 (542)
64 PF14871 GHL6: Hypothetical gl 55.4 42 0.0009 30.3 6.7 58 109-167 4-66 (132)
65 cd07948 DRE_TIM_HCS Saccharomy 51.8 23 0.0005 35.7 4.9 60 108-167 74-134 (262)
66 PLN02746 hydroxymethylglutaryl 51.8 42 0.00091 35.4 7.0 84 107-199 123-208 (347)
67 cd06598 GH31_transferase_CtsZ 51.1 1.2E+02 0.0026 31.4 10.2 67 148-217 73-168 (317)
68 PF02055 Glyco_hydro_30: O-Gly 50.9 74 0.0016 35.3 9.0 97 409-513 319-419 (496)
69 TIGR02660 nifV_homocitr homoci 50.6 41 0.0009 35.5 6.8 80 108-202 75-155 (365)
70 TIGR02403 trehalose_treC alpha 50.6 21 0.00045 40.0 4.7 56 104-165 26-95 (543)
71 TIGR00433 bioB biotin syntheta 49.8 36 0.00078 34.4 6.0 55 107-164 122-177 (296)
72 PF12876 Cellulase-like: Sugar 49.2 8.9 0.00019 31.8 1.2 19 197-215 1-22 (88)
73 PRK12399 tagatose 1,6-diphosph 49.0 80 0.0017 33.0 8.2 92 110-210 110-204 (324)
74 PRK14041 oxaloacetate decarbox 48.9 52 0.0011 36.2 7.4 56 103-171 88-148 (467)
75 cd07944 DRE_TIM_HOA_like 4-hyd 48.8 58 0.0013 32.9 7.3 67 108-202 85-151 (266)
76 PRK04161 tagatose 1,6-diphosph 48.6 81 0.0018 33.0 8.2 93 109-210 111-206 (329)
77 cd07941 DRE_TIM_LeuA3 Desulfob 48.6 1.3E+02 0.0027 30.5 9.7 60 109-168 82-142 (273)
78 cd06593 GH31_xylosidase_YicI Y 48.6 91 0.002 31.9 8.8 105 107-214 26-160 (308)
79 COG5309 Exo-beta-1,3-glucanase 48.1 63 0.0014 32.9 7.1 54 97-166 55-108 (305)
80 PRK05692 hydroxymethylglutaryl 48.1 57 0.0012 33.4 7.2 85 107-200 81-167 (287)
81 TIGR00612 ispG_gcpE 1-hydroxy- 47.6 1.1E+02 0.0024 32.2 9.0 87 97-197 74-160 (346)
82 PRK09441 cytoplasmic alpha-amy 47.0 30 0.00064 38.0 5.2 68 102-169 19-107 (479)
83 PLN00196 alpha-amylase; Provis 46.8 32 0.00069 37.4 5.3 66 103-168 42-117 (428)
84 PRK10933 trehalose-6-phosphate 46.5 26 0.00057 39.3 4.7 60 104-165 32-101 (551)
85 TIGR03581 EF_0839 conserved hy 46.4 38 0.00083 33.3 5.1 52 104-163 134-207 (236)
86 PRK11858 aksA trans-homoaconit 46.1 58 0.0013 34.7 7.1 58 108-165 78-136 (378)
87 cd06601 GH31_lyase_GLase GLase 46.0 93 0.002 32.6 8.5 72 148-221 67-141 (332)
88 cd07943 DRE_TIM_HOA 4-hydroxy- 45.6 1.8E+02 0.004 29.0 10.3 46 108-166 88-133 (263)
89 cd07938 DRE_TIM_HMGL 3-hydroxy 45.6 62 0.0014 32.8 6.9 83 108-199 76-160 (274)
90 PRK14040 oxaloacetate decarbox 44.8 65 0.0014 36.6 7.5 96 104-216 91-211 (593)
91 TIGR03217 4OH_2_O_val_ald 4-hy 43.1 1.9E+02 0.004 30.3 10.2 54 108-174 90-145 (333)
92 TIGR01210 conserved hypothetic 42.8 1.1E+02 0.0025 31.6 8.5 108 108-229 117-229 (313)
93 PRK12568 glycogen branching en 42.7 71 0.0015 37.1 7.5 100 104-211 268-408 (730)
94 TIGR01515 branching_enzym alph 42.7 1.2E+02 0.0025 34.6 9.2 100 104-211 155-295 (613)
95 PRK12331 oxaloacetate decarbox 41.8 89 0.0019 34.2 7.8 93 107-216 98-210 (448)
96 cd06603 GH31_GANC_GANAB_alpha 41.3 1.7E+02 0.0037 30.5 9.6 71 148-218 67-167 (339)
97 TIGR02456 treS_nterm trehalose 40.8 33 0.00072 38.2 4.5 57 106-168 29-101 (539)
98 PRK08599 coproporphyrinogen II 40.6 1.2E+02 0.0025 32.1 8.4 104 107-225 99-204 (377)
99 PRK12581 oxaloacetate decarbox 40.4 81 0.0018 34.7 7.2 57 103-172 98-159 (468)
100 PRK12858 tagatose 1,6-diphosph 40.0 1.1E+02 0.0023 32.4 7.7 57 111-170 112-168 (340)
101 PRK14706 glycogen branching en 40.0 77 0.0017 36.3 7.2 89 112-202 175-299 (639)
102 PLN02784 alpha-amylase 38.9 65 0.0014 38.0 6.4 66 102-167 518-592 (894)
103 PRK14511 maltooligosyl trehalo 38.8 71 0.0015 37.8 6.8 60 104-169 19-95 (879)
104 cd02803 OYE_like_FMN_family Ol 38.6 2.2E+02 0.0048 29.2 9.9 89 130-227 62-171 (327)
105 cd06600 GH31_MGAM-like This fa 38.0 1.7E+02 0.0038 30.2 9.0 69 148-217 67-164 (317)
106 TIGR00539 hemN_rel putative ox 37.4 71 0.0015 33.5 6.1 76 108-199 100-178 (360)
107 PRK14705 glycogen branching en 36.9 1.5E+02 0.0033 36.6 9.3 89 108-202 768-897 (1224)
108 PLN02447 1,4-alpha-glucan-bran 35.6 58 0.0013 38.0 5.4 94 103-202 248-383 (758)
109 PRK09505 malS alpha-amylase; R 35.6 57 0.0012 37.6 5.3 63 107-169 232-318 (683)
110 COG0821 gcpE 1-hydroxy-2-methy 35.2 2.4E+02 0.0052 29.7 9.1 86 98-197 77-162 (361)
111 PF03511 Fanconi_A: Fanconi an 34.9 32 0.0007 27.0 2.2 39 129-169 19-57 (64)
112 cd07940 DRE_TIM_IPMS 2-isoprop 34.9 1E+02 0.0022 31.0 6.5 80 108-202 72-156 (268)
113 PRK10340 ebgA cryptic beta-D-g 34.8 89 0.0019 37.9 7.0 77 418-515 504-600 (1021)
114 cd06545 GH18_3CO4_chitinase Th 34.5 93 0.002 30.8 6.1 73 125-202 27-99 (253)
115 TIGR01108 oadA oxaloacetate de 34.2 1.3E+02 0.0029 34.0 7.8 93 107-216 93-205 (582)
116 PF00150 Cellulase: Cellulase 34.1 1E+02 0.0022 30.2 6.4 56 147-205 23-78 (281)
117 cd06591 GH31_xylosidase_XylS X 33.8 2E+02 0.0044 29.7 8.7 71 147-218 68-164 (319)
118 COG3589 Uncharacterized conser 33.6 1.5E+02 0.0033 31.1 7.4 72 108-193 19-90 (360)
119 PRK09058 coproporphyrinogen II 33.3 1.2E+02 0.0026 33.0 7.2 107 107-228 162-270 (449)
120 cd06419 GH25_muramidase_2 Unch 33.1 1.1E+02 0.0024 29.3 6.1 84 105-209 46-134 (190)
121 cd06602 GH31_MGAM_SI_GAA This 33.1 2E+02 0.0044 30.0 8.6 69 148-217 69-169 (339)
122 PF00682 HMGL-like: HMGL-like 32.6 2.4E+02 0.0052 27.4 8.7 106 108-216 66-194 (237)
123 COG1523 PulA Type II secretory 32.6 82 0.0018 36.4 5.9 55 111-165 206-285 (697)
124 cd07947 DRE_TIM_Re_CS Clostrid 32.5 1.4E+02 0.003 30.5 7.1 59 107-165 76-135 (279)
125 PF03659 Glyco_hydro_71: Glyco 32.4 1.5E+02 0.0033 31.7 7.7 51 105-165 17-67 (386)
126 PLN02389 biotin synthase 32.1 1.1E+02 0.0024 32.7 6.5 57 106-165 176-233 (379)
127 PRK10785 maltodextrin glucosid 31.5 69 0.0015 36.3 5.1 53 107-165 181-246 (598)
128 PTZ00445 p36-lilke protein; Pr 31.4 80 0.0017 31.1 4.8 51 145-199 29-89 (219)
129 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.3 2.1E+02 0.0046 28.9 8.2 68 107-199 93-160 (275)
130 PRK03705 glycogen debranching 30.9 90 0.0019 35.9 5.9 54 111-165 185-262 (658)
131 cd06542 GH18_EndoS-like Endo-b 30.9 1.2E+02 0.0026 29.9 6.3 55 144-202 50-104 (255)
132 PRK13398 3-deoxy-7-phosphohept 30.6 1.7E+02 0.0037 29.6 7.3 73 100-175 36-108 (266)
133 PRK00366 ispG 4-hydroxy-3-meth 30.3 2.2E+02 0.0047 30.2 8.0 73 114-197 97-169 (360)
134 PRK08195 4-hyroxy-2-oxovalerat 29.9 1.8E+02 0.0038 30.6 7.5 67 108-202 91-157 (337)
135 PRK14510 putative bifunctional 29.9 54 0.0012 40.5 4.1 58 103-164 183-266 (1221)
136 cd06525 GH25_Lyc-like Lyc mura 29.8 3.7E+02 0.0079 25.2 9.1 20 185-204 100-119 (184)
137 PRK07094 biotin synthase; Prov 29.8 82 0.0018 32.4 5.0 55 106-163 127-183 (323)
138 cd02874 GH18_CFLE_spore_hydrol 29.4 2.2E+02 0.0047 29.1 8.0 84 111-202 16-103 (313)
139 TIGR02401 trehalose_TreY malto 29.4 81 0.0017 37.2 5.2 60 104-169 15-91 (825)
140 PLN02923 xylose isomerase 29.3 5.7E+02 0.012 27.9 11.0 84 106-197 124-212 (478)
141 TIGR02629 L_rham_iso_rhiz L-rh 28.9 7.7E+02 0.017 26.8 12.0 88 108-209 73-171 (412)
142 PRK06294 coproporphyrinogen II 28.6 2.1E+02 0.0045 30.3 7.8 95 108-218 103-200 (370)
143 TIGR01232 lacD tagatose 1,6-di 28.6 1.9E+02 0.0041 30.3 7.2 92 110-210 111-205 (325)
144 TIGR02635 RhaI_grampos L-rhamn 27.7 2E+02 0.0044 30.7 7.5 87 99-203 35-130 (378)
145 PRK11572 copper homeostasis pr 26.8 1.5E+02 0.0032 29.8 6.0 42 104-154 72-113 (248)
146 PF04646 DUF604: Protein of un 26.7 31 0.00067 34.7 1.1 72 154-228 77-148 (255)
147 cd06599 GH31_glycosidase_Aec37 26.6 2.5E+02 0.0054 29.0 7.9 35 181-216 137-171 (317)
148 TIGR03234 OH-pyruv-isom hydrox 26.1 1.3E+02 0.0028 29.5 5.5 66 103-171 82-150 (254)
149 KOG2233 Alpha-N-acetylglucosam 25.6 1.5E+02 0.0032 32.8 5.9 111 104-214 77-248 (666)
150 smart00729 Elp3 Elongator prot 25.2 3.3E+02 0.0071 24.8 7.9 56 105-163 97-155 (216)
151 PF02065 Melibiase: Melibiase; 24.7 2.6E+02 0.0057 30.1 7.8 92 106-202 59-183 (394)
152 COG1501 Alpha-glucosidases, fa 24.7 2.2E+02 0.0048 33.5 7.7 101 117-220 294-422 (772)
153 PF10566 Glyco_hydro_97: Glyco 24.4 1.8E+02 0.0039 29.7 6.1 68 107-185 108-175 (273)
154 PF04914 DltD_C: DltD C-termin 24.3 2E+02 0.0043 25.9 5.8 56 145-204 36-91 (130)
155 PTZ00445 p36-lilke protein; Pr 24.2 1.2E+02 0.0027 29.8 4.6 56 111-167 35-100 (219)
156 PRK14507 putative bifunctional 24.2 1.5E+02 0.0032 37.9 6.4 66 104-175 757-844 (1693)
157 cd07938 DRE_TIM_HMGL 3-hydroxy 24.0 3.9E+02 0.0084 27.0 8.6 92 105-215 114-205 (274)
158 PRK12677 xylose isomerase; Pro 24.0 4.8E+02 0.01 27.8 9.6 71 107-184 33-104 (384)
159 PRK05628 coproporphyrinogen II 23.6 2.8E+02 0.0061 29.2 7.8 105 107-226 107-213 (375)
160 PF04055 Radical_SAM: Radical 23.3 99 0.0021 27.1 3.7 52 108-161 90-143 (166)
161 TIGR03471 HpnJ hopanoid biosyn 22.5 1.3E+02 0.0028 32.9 5.1 60 108-171 287-348 (472)
162 PRK10426 alpha-glucosidase; Pr 22.4 5.4E+02 0.012 29.5 10.1 107 106-214 222-364 (635)
163 PRK05848 nicotinate-nucleotide 22.3 1.8E+02 0.0039 29.6 5.7 46 404-480 166-212 (273)
164 PRK06256 biotin synthase; Vali 22.2 1.3E+02 0.0028 31.2 4.8 56 106-164 150-206 (336)
165 PF01261 AP_endonuc_2: Xylose 22.1 98 0.0021 28.7 3.6 61 103-163 69-130 (213)
166 PRK13209 L-xylulose 5-phosphat 21.9 6.6E+02 0.014 24.8 9.8 53 106-162 22-74 (283)
167 PLN02960 alpha-amylase 21.8 1.4E+02 0.003 35.5 5.2 94 103-202 414-549 (897)
168 PRK09282 pyruvate carboxylase 21.7 2.7E+02 0.006 31.6 7.5 93 107-216 98-210 (592)
169 TIGR00419 tim triosephosphate 21.6 1.7E+02 0.0037 28.5 5.2 43 112-165 75-117 (205)
170 PLN03153 hypothetical protein; 21.4 94 0.002 34.6 3.6 67 154-229 327-400 (537)
171 cd06592 GH31_glucosidase_KIAA1 21.3 3.3E+02 0.0071 27.9 7.5 107 106-215 31-167 (303)
172 PRK07379 coproporphyrinogen II 21.2 3.7E+02 0.008 28.7 8.1 105 107-228 114-222 (400)
173 TIGR02100 glgX_debranch glycog 20.8 1.4E+02 0.0031 34.5 5.1 55 111-165 190-265 (688)
174 COG0366 AmyA Glycosidases [Car 20.7 1E+02 0.0023 33.2 3.9 62 109-176 33-111 (505)
175 PF13812 PPR_3: Pentatricopept 20.4 75 0.0016 20.3 1.8 15 147-161 20-34 (34)
176 PLN02229 alpha-galactosidase 20.3 2.1E+02 0.0045 31.2 5.9 58 106-167 81-148 (427)
177 PLN02925 4-hydroxy-3-methylbut 20.3 2.6E+02 0.0057 32.3 6.9 53 146-199 211-263 (733)
178 TIGR02631 xylA_Arthro xylose i 20.3 5.4E+02 0.012 27.5 9.1 72 106-184 33-105 (382)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-150 Score=1177.65 Aligned_cols=472 Identities=57% Similarity=1.045 Sum_probs=440.1
Q ss_pred CCCCccCCCCCCccccccccCCcCCCCcCCCCCcCchhhccccC-CCcccCCCCCCcCCchhhchHHHHHHHHhcCCCee
Q 010049 44 TGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAY 122 (519)
Q Consensus 44 ~~~~~~~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~-~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~ 122 (519)
...+.|.+||+||+||+||||||+|||+++|||++|+||+|+|. |+++.+++++|+|||+||||+|||+|||+||+++|
T Consensus 29 ~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~af 108 (524)
T KOG0626|consen 29 TTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAF 108 (524)
T ss_pred cCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeE
Confidence 34678999999999999999999999999999999999999997 77888899999999999999999999999999999
Q ss_pred eeecccccccccCC--CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHH
Q 010049 123 RFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKT 200 (519)
Q Consensus 123 Rfsi~Wsri~P~~~--g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~ 200 (519)
|||||||||+|.|+ +.||++||+||++||++|+++||+|+|||+|||+||+|+++||||+|++++++|.+||++||++
T Consensus 109 RFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~ 188 (524)
T KOG0626|consen 109 RFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQE 188 (524)
T ss_pred EEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEE
Q 010049 201 FGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGI 280 (519)
Q Consensus 201 fgd~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi 280 (519)
|||+||+|+|||||++++..||..|..|||+|+.+.++|..|+|++++|+|+||||||||+||++||++|+..|+|+|||
T Consensus 189 fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi 268 (524)
T KOG0626|consen 189 FGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGI 268 (524)
T ss_pred hcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeE
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred EecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeee
Q 010049 281 LLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYM 360 (519)
Q Consensus 281 ~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v 360 (519)
+++..|++|.+.+++|.+||+|+.+|.++||++|++.|+||++|++.+++|||+||+||++++||+.||+|||||++.+|
T Consensus 269 ~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~ 348 (524)
T KOG0626|consen 269 ALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYV 348 (524)
T ss_pred EEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhh
Confidence 99999999999899999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ecCCCCC-CCCCCccccCCcccccccCC-ccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCC--CC
Q 010049 361 YDPHLKQ-PKQVGYQQDWNAGFAYEKNG-VPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGN--VT 436 (519)
Q Consensus 361 ~~~~~~~-~~~~~~~~d~~~~~~~~~~g-~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~--~~ 436 (519)
++...+. ...+....|..+.. ..++ .+++..+.+.|+.++|+||+++|++++++|+||||||||||+++... .+
T Consensus 349 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~ 426 (524)
T KOG0626|consen 349 KHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKS 426 (524)
T ss_pred hccCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccc
Confidence 8865422 22334555555444 2233 45666677889999999999999999999999999999999998432 34
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHHHH-cCCceEEEEeccccccccccCCCccccceEEEcC-CCCcccccchHHHHHHHH
Q 010049 437 LPKGLHDTTRINYYKGYLTQLKKAVD-DGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDF-TNLKRYPKMSAYWFKQLL 514 (519)
Q Consensus 437 ~~~~~~D~~Ri~yl~~hL~~v~~Ai~-~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~-~~~~R~pK~Sa~~y~~ii 514 (519)
....++|..||+|++.||++|++||. +||||+|||+|||||||||..||+.|||||+||| +.++|+||.|++||+++|
T Consensus 427 ~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl 506 (524)
T KOG0626|consen 427 LEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFL 506 (524)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHH
Confidence 55678999999999999999999995 9999999999999999999999999999999999 569999999999999999
Q ss_pred hhc
Q 010049 515 KRN 517 (519)
Q Consensus 515 ~~~ 517 (519)
+.+
T Consensus 507 ~~~ 509 (524)
T KOG0626|consen 507 KGK 509 (524)
T ss_pred cCC
Confidence 865
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=8.2e-137 Score=1107.11 Aligned_cols=458 Identities=45% Similarity=0.860 Sum_probs=412.3
Q ss_pred CCCccCCCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeee
Q 010049 45 GGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRF 124 (519)
Q Consensus 45 ~~~~~~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rf 124 (519)
..+++.+||++|+||+|||||||||++++||||+|+||.|+|.+ ++.++++||||||||+|||+|||+||+++|||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 44667789999999999999999999999999999999999854 34688999999999999999999999999999
Q ss_pred ecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010049 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (519)
Q Consensus 125 si~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (519)
||+||||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++|||+
T Consensus 99 SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDr 178 (503)
T PLN02849 99 SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNH 178 (503)
T ss_pred eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecC
Q 010049 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDF 284 (519)
Q Consensus 205 V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~ 284 (519)
|++|+|||||++++..||..|.+|||.+......|..+++.++.|+|+||+++|||+||++||+.++..|+++||++++.
T Consensus 179 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~ 258 (503)
T PLN02849 179 VKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFA 258 (503)
T ss_pred CCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 99999999999999999999999999754211246656667789999999999999999999997655578999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeeeecCC
Q 010049 285 VWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPH 364 (519)
Q Consensus 285 ~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~ 364 (519)
.+++|.+++++|+.||+++++|.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||+|||||++.+|+...
T Consensus 259 ~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~ 338 (503)
T PLN02849 259 LGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIK 338 (503)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCC--CCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcC
Q 010049 365 LKQ--PKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLH 442 (519)
Q Consensus 365 ~~~--~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~ 442 (519)
... ...+.+..+ .+.+....++.+| +|+|+||+++|++++++|++|||||||||++..++ .++.++
T Consensus 339 ~~~~~~~~~~~~~~---------~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~--~~~~v~ 406 (503)
T PLN02849 339 IKPSLSGNPDFYSD---------MGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD--LQLQQK 406 (503)
T ss_pred CCCCCCCCCccccc---------cCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC--CCCccc
Confidence 110 000011000 0112223456788 99999999999999999999899999999998543 356799
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCCC--CcccccchHHHHHHHHhhcC
Q 010049 443 DTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFTN--LKRYPKMSAYWFKQLLKRNK 518 (519)
Q Consensus 443 D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~~--~~R~pK~Sa~~y~~ii~~~~ 518 (519)
|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++||+++|++|.
T Consensus 407 D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~ 484 (503)
T PLN02849 407 DTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNS 484 (503)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999975 59999999999999999874
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.8e-136 Score=1102.96 Aligned_cols=461 Identities=49% Similarity=0.916 Sum_probs=411.7
Q ss_pred CCCCccCCCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeee
Q 010049 44 TGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYR 123 (519)
Q Consensus 44 ~~~~~~~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~R 123 (519)
+..+++.+||++|+||+|||||||||++++||||+|+||.|+| ++. .+..++++||||||||+|||+|||+||+++||
T Consensus 23 ~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YR 100 (497)
T PLN02998 23 SLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYR 100 (497)
T ss_pred cccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEE
Confidence 3446778899999999999999999999999999999999998 553 23258899999999999999999999999999
Q ss_pred eecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCC
Q 010049 124 FSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGD 203 (519)
Q Consensus 124 fsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd 203 (519)
|||+||||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||++|||
T Consensus 101 fSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgd 180 (497)
T PLN02998 101 FSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGD 180 (497)
T ss_pred eeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeecccchhccccccCcccCCCCCCcCCC-CCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEe
Q 010049 204 RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFG-NCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILL 282 (519)
Q Consensus 204 ~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~ 282 (519)
+|++|+|||||++++..||..|.+|||.+....+ .|..+++.++.|+|+||+++|||+||++||+.++..|+++|||++
T Consensus 181 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~ 260 (497)
T PLN02998 181 RVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISV 260 (497)
T ss_pred cCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 9999999999999999999999999997553222 477777778899999999999999999999987667899999999
Q ss_pred cCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeeeec
Q 010049 283 DFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYD 362 (519)
Q Consensus 283 ~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~ 362 (519)
+..+++|.+++++|++||+++++|.++||+||++.|+||+.|++.+++++|.||++|+++|++++||+|||||++.+|+.
T Consensus 261 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 261 YTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred eCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCC-CCCCCCccccCCcccccccCCccCCCCCC-CCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCC
Q 010049 363 PHLK-QPKQVGYQQDWNAGFAYEKNGVPIGPRAN-SYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKG 440 (519)
Q Consensus 363 ~~~~-~~~~~~~~~d~~~~~~~~~~g~~~~~~~~-~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~ 440 (519)
.... ......+..+..... .+.+..+. .+| +|+|+||+.+|++++++|++|||||||||+++.+ ++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~ 409 (497)
T PLN02998 341 NSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH----SSS 409 (497)
T ss_pred CCCcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC----CCc
Confidence 3321 000011111111100 01122233 455 9999999999999999999989999999998743 467
Q ss_pred cCchhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCC--CCcccccchHHHHHHHHhhc
Q 010049 441 LHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFT--NLKRYPKMSAYWFKQLLKRN 517 (519)
Q Consensus 441 ~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~--~~~R~pK~Sa~~y~~ii~~~ 517 (519)
++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++ +++|+||+|++|||++|++.
T Consensus 410 v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 410 LVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999996 57999999999999999863
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=2.9e-136 Score=1103.11 Aligned_cols=456 Identities=42% Similarity=0.811 Sum_probs=410.1
Q ss_pred CccCCCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeec
Q 010049 47 LSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSI 126 (519)
Q Consensus 47 ~~~~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi 126 (519)
+++.+||++|+||+|||||||||++++||||+|+||.|+|. .+++++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 66678999999999999999999999999999999999873 24568999999999999999999999999999999
Q ss_pred ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcc
Q 010049 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (519)
Q Consensus 127 ~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~ 206 (519)
+||||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecccchhccccccCcccCCCCCCcCCC-CCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCc
Q 010049 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAFG-NCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFV 285 (519)
Q Consensus 207 ~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~ 285 (519)
+|+|||||++++..||..|.. ||.++.... .|.++++.++.|+|+||+++|||+||++||++++..|+++|||+++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999884 887653111 465566677899999999999999999999987777899999999999
Q ss_pred cccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeeeecCCC
Q 010049 286 WYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (519)
Q Consensus 286 ~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~~ 365 (519)
+++|.+++++|+.||+++++|.++||+||++.|+||+.|++.+++++|.||++|+++|+|++||+|||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred CCCC---CCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcC
Q 010049 366 KQPK---QVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLH 442 (519)
Q Consensus 366 ~~~~---~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~ 442 (519)
.... ...+..+.+.. ..+.++.++++| +|+|+||+.+|++++++|++|||||||||++..+ ++.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~i~ 406 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGAY------IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----DSTLQ 406 (504)
T ss_pred CCcccccCCCcccccccc------cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC----CCccc
Confidence 1000 00111111100 012234677888 9999999999999999999989999999998742 47789
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCC--CCcccccchHHHHHHHHhhcC
Q 010049 443 DTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFT--NLKRYPKMSAYWFKQLLKRNK 518 (519)
Q Consensus 443 D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~--~~~R~pK~Sa~~y~~ii~~~~ 518 (519)
|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++ +++|+||+|++||+++|++++
T Consensus 407 D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~ 484 (504)
T PLN02814 407 DTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTI 484 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999997 469999999999999998765
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2.6e-132 Score=1069.19 Aligned_cols=449 Identities=36% Similarity=0.636 Sum_probs=396.2
Q ss_pred CCCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeecccc
Q 010049 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (519)
Q Consensus 50 ~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Ws 129 (519)
.+||++|+||+|||||||||++++||||+|+||+|+|.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 459999999999999999999999999999999999876654 7899999999999999999999999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEE
Q 010049 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (519)
Q Consensus 130 ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~ 209 (519)
||+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999987 9999999999999999999999999 99999
Q ss_pred eecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCccccC
Q 010049 210 TFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEP 289 (519)
Q Consensus 210 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P 289 (519)
|||||++++..||..|.+|||++. +.++.++|+||+++|||+||++||+.. |+++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~----------~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKY----------DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCc----------cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 999999999999999999999753 124689999999999999999999963 7899999999999999
Q ss_pred CC-CCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhc------cCCCCCHHHHHhhcC---CccEEEEecCCCee
Q 010049 290 LT-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN------RLPKFTKEEVKMVKG---SIDFVGINQYTAYY 359 (519)
Q Consensus 290 ~~-~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~------~lp~ft~ee~~~ikg---s~DFiGiNyYt~~~ 359 (519)
.+ ++++|++||+++++|.++||+||++.|+||+.|++.++. ..|.||++|+++|++ ++||+|||||++.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 98 899999999999999999999999999999999997741 123899999999974 68999999999999
Q ss_pred eecCCCCCCCCCCccccCCcc---c--ccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCC-CcEEEecCCCCCCC
Q 010049 360 MYDPHLKQPKQVGYQQDWNAG---F--AYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGN-PTVILSENGMDDPG 433 (519)
Q Consensus 360 v~~~~~~~~~~~~~~~d~~~~---~--~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~-ppI~ITENG~~~~~ 433 (519)
|+..............+.... . .......+..+.++++| +|+|+||+.+|++++++|++ |||||||||++..+
T Consensus 304 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d 382 (469)
T PRK13511 304 MRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKD 382 (469)
T ss_pred eecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCC
Confidence 976321100000000000000 0 00000011124567888 89999999999999999997 78999999999865
Q ss_pred CCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCCCCcccccchHHHHHHH
Q 010049 434 NVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFTNLKRYPKMSAYWFKQL 513 (519)
Q Consensus 434 ~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~~~~R~pK~Sa~~y~~i 513 (519)
+.+.++.++|++||+||++||++|++||++||||+|||+|||+|||||.+||++|||||+||++|++|+||+|++||+++
T Consensus 383 ~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~ 462 (469)
T PRK13511 383 EFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKL 462 (469)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHHHHHHH
Confidence 55556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q 010049 514 LKRNK 518 (519)
Q Consensus 514 i~~~~ 518 (519)
|++|.
T Consensus 463 i~~~~ 467 (469)
T PRK13511 463 AETKV 467 (469)
T ss_pred HHhCC
Confidence 99885
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.4e-131 Score=1059.63 Aligned_cols=443 Identities=36% Similarity=0.642 Sum_probs=394.4
Q ss_pred CCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeeccccc
Q 010049 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSR 130 (519)
Q Consensus 51 ~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsr 130 (519)
+||++|+||+|||||||||+++++|||+|+||+|.+.++++ ++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWY----TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCCC----CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 59999999999999999999999999999999998765543 67999999999999999999999999999999999
Q ss_pred ccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEe
Q 010049 131 IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 210 (519)
Q Consensus 131 i~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t 210 (519)
|+|+|+|.+|++||+||++||++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||| |++|+|
T Consensus 79 I~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 79 IFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 99998889999999999999999999999999999999999999987 9999999999999999999999998 999999
Q ss_pred ecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCccccCC
Q 010049 211 FNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPL 290 (519)
Q Consensus 211 ~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~ 290 (519)
||||++++..||+.|.+|||.+. +.++.++|+||+++|||+||++||+.. |+++|||+++..+++|.
T Consensus 157 ~NEP~~~~~~gy~~G~~~Pg~~~----------~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 223 (467)
T TIGR01233 157 FNEIGPIGDGQYLVGKFPPGIKY----------DLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPY 223 (467)
T ss_pred ecchhhhhhccchhcccCCCccc----------hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEEC
Confidence 99999999999999999999643 124689999999999999999999963 78999999999999999
Q ss_pred C-CCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhcc------CCCCCHHHHHhh---cCCccEEEEecCCCeee
Q 010049 291 T-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR------LPKFTKEEVKMV---KGSIDFVGINQYTAYYM 360 (519)
Q Consensus 291 ~-~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~------lp~ft~ee~~~i---kgs~DFiGiNyYt~~~v 360 (519)
+ ++++|++||++++++.++||+||++.|+||+.|++.++.+ +|.||++|+++| ++++||+|||||++.+|
T Consensus 224 ~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v 303 (467)
T TIGR01233 224 DPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWM 303 (467)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceee
Confidence 7 8999999999999999999999999999999999987632 378999999999 58999999999999999
Q ss_pred ecCCCCCC----CC----CCccccCCcccccccCCccCC-CCCCCCCcccChHHHHHHHHHHHhhcCC-CcEEEecCCCC
Q 010049 361 YDPHLKQP----KQ----VGYQQDWNAGFAYEKNGVPIG-PRANSYWLYNVPWGMYKALMYIKGHYGN-PTVILSENGMD 430 (519)
Q Consensus 361 ~~~~~~~~----~~----~~~~~d~~~~~~~~~~g~~~~-~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~-ppI~ITENG~~ 430 (519)
+....... .. .......... ....+.+ +.++++| +|+|+||+.+|++++++|++ |||||||||++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~ 378 (467)
T TIGR01233 304 QAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLG 378 (467)
T ss_pred ccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCC
Confidence 75321100 00 0000000000 0001111 3567888 99999999999999999997 78999999999
Q ss_pred CCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCCCCcccccchHHHH
Q 010049 431 DPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFTNLKRYPKMSAYWF 510 (519)
Q Consensus 431 ~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~~~~R~pK~Sa~~y 510 (519)
..++.+ ++.++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++||||++||++|++|+||+|++||
T Consensus 379 ~~d~~~-~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy 457 (467)
T TIGR01233 379 YKDEFV-DNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWY 457 (467)
T ss_pred CCCCCC-CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHHH
Confidence 865443 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 010049 511 KQLLKRNK 518 (519)
Q Consensus 511 ~~ii~~~~ 518 (519)
|++|++|-
T Consensus 458 ~~ii~~~~ 465 (467)
T TIGR01233 458 KKLAETQV 465 (467)
T ss_pred HHHHHhcC
Confidence 99999873
No 7
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=8e-132 Score=1064.96 Aligned_cols=447 Identities=51% Similarity=0.942 Sum_probs=391.9
Q ss_pred CCCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeecccc
Q 010049 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (519)
Q Consensus 50 ~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Ws 129 (519)
.+||++|+||+|||||||||++++||||+|+||.|+|.++++.+++++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 57999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cccccC-CCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcceE
Q 010049 130 RIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNW 208 (519)
Q Consensus 130 ri~P~~-~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W 208 (519)
||+|+| .|.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||+|++++++|++||++||++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998 69999999999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred EeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCcccc
Q 010049 209 MTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYE 288 (519)
Q Consensus 209 ~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~ 288 (519)
+|||||++++..||..|.+|||..+ .++.++|+||+++|||+||++||+++ |+++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999554 57899999999999999999999987 799999999999999
Q ss_pred CCCCCHHHH-HHHHHHHhhhhccchhhhhccccChhhHHHhhcc--CCCCCHHHHHhhcCCccEEEEecCCCeeeecCCC
Q 010049 289 PLTRSKADN-YAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (519)
Q Consensus 289 P~~~~~~D~-~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~--lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~~ 365 (519)
|.+++++|. +||++.++|.++||+||++.|+||..|+..++++ +|.||++|++.|++++||+|||||++..|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999887776 8999999999999999999999999999999988 9999999999999999999999999999998763
Q ss_pred CCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCchh
Q 010049 366 KQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHDTT 445 (519)
Q Consensus 366 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D~~ 445 (519)
..... ....+..... . ..+.++.++++| +++|+||+++|++++++|++|||||||||+++.++... +.++|+.
T Consensus 308 ~~~~~-~~~~~~~~~~--~--~~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~-~~v~D~~ 380 (455)
T PF00232_consen 308 PSSPP-SYDSDAPFGQ--P--YNPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDD-GKVDDDY 380 (455)
T ss_dssp STSST-THEEEESEEE--E--CETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTT-SHBSHHH
T ss_pred ccccc-cccCCccccc--c--ccccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccc-cCcCcHH
Confidence 32111 1111110000 0 023445688999 89999999999999999999999999999999655444 8899999
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEc-CCCCcccccchHHHHHHHHhhcC
Q 010049 446 RINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVD-FTNLKRYPKMSAYWFKQLLKRNK 518 (519)
Q Consensus 446 Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD-~~~~~R~pK~Sa~~y~~ii~~~~ 518 (519)
||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+|| ++|++|+||+|++||+++|++|.
T Consensus 381 Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng 454 (455)
T PF00232_consen 381 RIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNG 454 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 58999999999999999999984
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3e-130 Score=1053.07 Aligned_cols=444 Identities=27% Similarity=0.477 Sum_probs=392.5
Q ss_pred CCCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCccc--C----------C--CCCCcCCchhhchHHHHHHHH
Q 010049 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA--N----------N--ATGDVSVDQYHRYKEDVDIMA 115 (519)
Q Consensus 50 ~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~--~----------~--~~~d~a~d~yhry~eDi~lmk 115 (519)
.+||++|+||+|||||||||++++||||+|+||+|+|.++++. . + .++++||||||||+|||+|||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4699999999999999999999999999999999998666541 1 1 268999999999999999999
Q ss_pred hcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHH
Q 010049 116 NLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (519)
Q Consensus 116 ~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya 194 (519)
+||+++|||||+||||+|+|+ |.+|++||+||++||++|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 999999999999999999975 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcceEEeecccchhcccccc-Ccc-cCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhc
Q 010049 195 DFCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (519)
Q Consensus 195 ~~~~~~fgd~V~~W~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~ 272 (519)
++||++|||+|++|+|||||++++..||. .|. +|||.. +.+++|+|+||+|+|||+||++||+.
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~-----------~~~~~~~a~h~~llAHa~A~~~~~~~--- 229 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN-----------KEQVKYQAAHHELVASAIATKIAHEV--- 229 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc-----------hhhhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999988886 444 366642 23568999999999999999999985
Q ss_pred CCCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhc--cCCCCCHHHHHhhc-CCccE
Q 010049 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN--RLPKFTKEEVKMVK-GSIDF 349 (519)
Q Consensus 273 ~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~--~lp~ft~ee~~~ik-gs~DF 349 (519)
.|+++|||+++..+++|.+++++|++||++++ +.+.||+||++.|+||+.|++.+++ .+|.||++|+++|+ |++||
T Consensus 230 ~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 230 DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 37899999999999999999999999999987 5678999999999999999999975 46889999999996 99999
Q ss_pred EEEecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCC
Q 010049 350 VGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGM 429 (519)
Q Consensus 350 iGiNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~ 429 (519)
+|||||++.+|+..+.... ....+ ... ... .|..+.++++| +|+|+||+++|++++++|++ ||||||||+
T Consensus 309 lGiNyYt~~~v~~~~~~~~---~~~~~-~~~--~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~ 378 (478)
T PRK09593 309 ISFSYYSSRVASGDPKVNE---KTAGN-IFA--SLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQK-PMFIVENGL 378 (478)
T ss_pred EEEecccCcccccCCCCCC---CCCCC-ccc--ccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence 9999999999975331100 00000 000 001 13334567888 99999999999999999986 699999999
Q ss_pred CCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHH-cCCceEEEEeccccccccccCC-CccccceEEEcCC-----CCccc
Q 010049 430 DDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVD-DGANVVGYFAWSLLDNFEWRLG-YTSRFGIVYVDFT-----NLKRY 502 (519)
Q Consensus 430 ~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~-~Gv~V~GY~~WSl~DnfEW~~G-y~~rfGL~~VD~~-----~~~R~ 502 (519)
+..++.+.++.++|++||+||++||++|++||+ +||||+|||+|||+|||||.+| |++|||||+||++ |++|+
T Consensus 379 ~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~ 458 (478)
T PRK09593 379 GAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRS 458 (478)
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCccccee
Confidence 986655667889999999999999999999995 9999999999999999999999 9999999999996 57999
Q ss_pred ccchHHHHHHHHhhcC
Q 010049 503 PKMSAYWFKQLLKRNK 518 (519)
Q Consensus 503 pK~Sa~~y~~ii~~~~ 518 (519)
||+|++||+++|++|.
T Consensus 459 pK~S~~wy~~ii~~~~ 474 (478)
T PRK09593 459 KKKSFDWYKKVIASNG 474 (478)
T ss_pred cccHHHHHHHHHHhCC
Confidence 9999999999998764
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.7e-129 Score=1045.21 Aligned_cols=443 Identities=29% Similarity=0.546 Sum_probs=387.5
Q ss_pred CCCCCccccccccCCcCCCCcCCCCCcCchhhccc---c-CCCccc----CCC--CCCcCCchhhchHHHHHHHHhcCCC
Q 010049 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NNA--TGDVSVDQYHRYKEDVDIMANLNFD 120 (519)
Q Consensus 51 ~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~---~-~~~~i~----~~~--~~d~a~d~yhry~eDi~lmk~lG~~ 120 (519)
+||++|+||+|||||||||++++||||+|+||+|+ | .|+++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 255553 222 6799999999999999999999999
Q ss_pred eeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010049 121 AYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFK 199 (519)
Q Consensus 121 ~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~ 199 (519)
+|||||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEeecccchhccc-----ccc-Ccc-cCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhc
Q 010049 200 TFGDRVKNWMTFNEPRVVAAL-----GYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (519)
Q Consensus 200 ~fgd~V~~W~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~ 272 (519)
+|||+|++|+|||||++++.. ||. .|. +|||.. ...+.|+|+||+++|||+||++||+..
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998776 333 333 255431 124579999999999999999999864
Q ss_pred CCCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhcc--CCCCCHHHHHhh-cCCccE
Q 010049 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMV-KGSIDF 349 (519)
Q Consensus 273 ~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~--lp~ft~ee~~~i-kgs~DF 349 (519)
|+++||++++..+++|.+++++|++||++++.+ +.||+||++.|+||+.|++.++++ .|.||++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 688999999999999999999999999999855 679999999999999999999874 489999999988 699999
Q ss_pred EEEecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCC
Q 010049 350 VGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGM 429 (519)
Q Consensus 350 iGiNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~ 429 (519)
+|||||++.+|+.....+. ..+..+. . ... .|..+.++++| +|+|+||+.+|++++++|++ ||||||||+
T Consensus 308 lGiNyYts~~v~~~~~~~~--~~~~~~~--~--~~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItENG~ 377 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNPQ--LDYVETR--D--LVS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVENGF 377 (476)
T ss_pred EEEecccCcccccCCCCCC--CCccccc--c--ccc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeCCc
Confidence 9999999999975321110 0010000 0 001 13334567888 99999999999999999986 699999999
Q ss_pred CCCCCCCCCCCcCchhhHHHHHHHHHHHHHHH-HcCCceEEEEeccccccccccCC-CccccceEEEcCC-----CCccc
Q 010049 430 DDPGNVTLPKGLHDTTRINYYKGYLTQLKKAV-DDGANVVGYFAWSLLDNFEWRLG-YTSRFGIVYVDFT-----NLKRY 502 (519)
Q Consensus 430 ~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai-~~Gv~V~GY~~WSl~DnfEW~~G-y~~rfGL~~VD~~-----~~~R~ 502 (519)
+..++.+.++.++|++||+||++||.+|++|| ++||||+|||+|||+|||||.+| |++|||||+||++ |++|+
T Consensus 378 ~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~ 457 (476)
T PRK09589 378 GAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERS 457 (476)
T ss_pred ccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccc
Confidence 98666666788999999999999999999999 89999999999999999999999 9999999999996 56999
Q ss_pred ccchHHHHHHHHhhcC
Q 010049 503 PKMSAYWFKQLLKRNK 518 (519)
Q Consensus 503 pK~Sa~~y~~ii~~~~ 518 (519)
||+|++|||++|++|.
T Consensus 458 pK~S~~wy~~~i~~ng 473 (476)
T PRK09589 458 RKKSFYWYRDVIANNG 473 (476)
T ss_pred cccHHHHHHHHHHhcC
Confidence 9999999999998874
No 10
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-129 Score=1017.43 Aligned_cols=445 Identities=40% Similarity=0.746 Sum_probs=402.8
Q ss_pred CCCCCCccccccccCCcCCCCcCCCCCcCchhhcccc--CCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeecc
Q 010049 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAK--KPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSIS 127 (519)
Q Consensus 50 ~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~--~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~ 127 (519)
.+||++|+||+||||||+|||+++||||+|+||.|.+ .|+++..+.++++||||||||+|||+||||||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4699999999999999999999999999999999999 47888888999999999999999999999999999999999
Q ss_pred cccccccCCC-CCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcc
Q 010049 128 WSRIFPYGTG-KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (519)
Q Consensus 128 Wsri~P~~~g-~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~ 206 (519)
||||+|++++ ++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999875 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCcc
Q 010049 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVW 286 (519)
Q Consensus 207 ~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~ 286 (519)
+|+||||||+++..||+.|.+||+..+ .++.++|+||+++|||+|++++|+.. ++.+||++++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 999999999999999999999999765 46789999999999999999999975 3349999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhcc--CCCCCHHHHHhhcC-CccEEEEecCCC-eeeec
Q 010049 287 YEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKG-SIDFVGINQYTA-YYMYD 362 (519)
Q Consensus 287 ~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~--lp~ft~ee~~~ikg-s~DFiGiNyYt~-~~v~~ 362 (519)
.+|.+++++|+.||+.++.+.+.+|+||+++|.||..+.+.+... +|.++++|+++||. ++||+|+|||++ .+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999998765 79999999999985 699999999994 44444
Q ss_pred CCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcC
Q 010049 363 PHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLH 442 (519)
Q Consensus 363 ~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~ 442 (519)
.+... ..+..+.... ... .|.-+.++.|| +|||+||+.+|+++++||+ +||||||||++..+....++ |+
T Consensus 308 ~~~~~---~~~~~~~~~~-~~~---~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~-i~ 377 (460)
T COG2723 308 EPRYV---SGYGPGGFFT-SVP---NPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDG-IN 377 (460)
T ss_pred cCCcC---Cccccccccc-ccC---CCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCC-cC
Confidence 33210 1111111010 011 13334568899 9999999999999999999 79999999999876655455 99
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCCC-CcccccchHHHHHHHHhhcC
Q 010049 443 DTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFTN-LKRYPKMSAYWFKQLLKRNK 518 (519)
Q Consensus 443 D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~~-~~R~pK~Sa~~y~~ii~~~~ 518 (519)
|++||+||++||.+|++||++||+|+|||+||++||+||.+||++||||++||++| ++|+||+|++|||++|++|.
T Consensus 378 DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 378 DDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999988 79999999999999999883
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=3.3e-128 Score=1036.13 Aligned_cols=445 Identities=29% Similarity=0.532 Sum_probs=389.4
Q ss_pred ccCCCCCCccccccccCCcCCCCcCCCCCcCchhhccc---c-CCCccc----CC--CCCCcCCchhhchHHHHHHHHhc
Q 010049 48 SRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NN--ATGDVSVDQYHRYKEDVDIMANL 117 (519)
Q Consensus 48 ~~~~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~---~-~~~~i~----~~--~~~d~a~d~yhry~eDi~lmk~l 117 (519)
++.+||++|+||+|||||||||++++||||+|+||+|+ | .|+++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999999 4 255552 22 27799999999999999999999
Q ss_pred CCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHH
Q 010049 118 NFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADF 196 (519)
Q Consensus 118 G~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~ 196 (519)
|+++|||||+||||+|+|+ |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999975 669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcceEEeecccchh-----ccccccC-ccc-CCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHH
Q 010049 197 CFKTFGDRVKNWMTFNEPRVV-----AALGYDN-GFF-APGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQK 269 (519)
Q Consensus 197 ~~~~fgd~V~~W~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~ 269 (519)
||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +..+.|+|+||+++|||+||++||+.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6678874 664 44321 23568999999999999999999996
Q ss_pred hhcCCCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccC--CCCCHHHHHhh-cCC
Q 010049 270 YEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRL--PKFTKEEVKMV-KGS 346 (519)
Q Consensus 270 ~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~l--p~ft~ee~~~i-kgs 346 (519)
. |+++|||++++.+++|.+++++|++||++++. ...||+||++.|+||+.|++.+++++ |.+|++|+++| +++
T Consensus 231 ~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 N---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred C---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 5 68999999999999999999999999999773 22359999999999999999998864 78999999999 589
Q ss_pred ccEEEEecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEec
Q 010049 347 IDFVGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSE 426 (519)
Q Consensus 347 ~DFiGiNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITE 426 (519)
+||+|||||++.+|+...........+. . ...+ |..+.++++| +|+|+||+.+|++++++|++ ||||||
T Consensus 307 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~-----~--~~~~--~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItE 375 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAEGGTGDAISGFE-----G--SVPN--PYVKASDWGW-QIDPVGLRYALCELYERYQK-PLFIVE 375 (477)
T ss_pred CCEEEEcceeCeeeccCCCCCCCccccc-----c--ccCC--CCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEeC
Confidence 9999999999999975321100000000 0 0011 2223566888 99999999999999999986 699999
Q ss_pred CCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHH-cCCceEEEEeccccccccccCC-CccccceEEEcCC-----CC
Q 010049 427 NGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVD-DGANVVGYFAWSLLDNFEWRLG-YTSRFGIVYVDFT-----NL 499 (519)
Q Consensus 427 NG~~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~-~Gv~V~GY~~WSl~DnfEW~~G-y~~rfGL~~VD~~-----~~ 499 (519)
||++..++.+.++.++|++||+||++||++|++||+ |||||+|||+|||+|||||.+| |++|||||+||++ ++
T Consensus 376 NG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~ 455 (477)
T PRK15014 376 NGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDM 455 (477)
T ss_pred CCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCccc
Confidence 999986666667889999999999999999999995 9999999999999999999999 9999999999995 47
Q ss_pred cccccchHHHHHHHHhhcC
Q 010049 500 KRYPKMSAYWFKQLLKRNK 518 (519)
Q Consensus 500 ~R~pK~Sa~~y~~ii~~~~ 518 (519)
+|+||+|++||+++|++|.
T Consensus 456 ~R~pK~S~~wy~~ii~~ng 474 (477)
T PRK15014 456 SRSRKKSFNWYKEVIASNG 474 (477)
T ss_pred ceecccHHHHHHHHHHhcC
Confidence 9999999999999998874
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=5.6e-128 Score=1032.76 Aligned_cols=443 Identities=27% Similarity=0.495 Sum_probs=395.0
Q ss_pred CCCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCccc------------CCC--CCCcCCchhhchHHHHHHHHh
Q 010049 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA------------NNA--TGDVSVDQYHRYKEDVDIMAN 116 (519)
Q Consensus 51 ~FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~------------~~~--~~d~a~d~yhry~eDi~lmk~ 116 (519)
+||++|+||+||||||||||+++||||+|+||+|+|.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998766552 222 679999999999999999999
Q ss_pred cCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHH
Q 010049 117 LNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYAD 195 (519)
Q Consensus 117 lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~ 195 (519)
||+++|||||+||||+|+|+ +.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEeecccchhcccccc-Ccc-cCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcC
Q 010049 196 FCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQK 273 (519)
Q Consensus 196 ~~~~~fgd~V~~W~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~ 273 (519)
.||++|||+|++|+|||||++++..||. .|. +|||... .++.|+|+||+++|||+||++||+..
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 664 5887532 34689999999999999999999864
Q ss_pred CCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhcc--CCCCCHHHHHhhcCCccEEE
Q 010049 274 QKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVG 351 (519)
Q Consensus 274 ~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~--lp~ft~ee~~~ikgs~DFiG 351 (519)
|+++||++++..+++|.+++++|++||++++ +.+.||+||++.|+||+.|++.++++ +|.||++|+++|++++||+|
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999999877 56899999999999999999999864 79999999999999999999
Q ss_pred EecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCC
Q 010049 352 INQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDD 431 (519)
Q Consensus 352 iNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~ 431 (519)
||||++.+|+....... .. .+..... .. .|..+.++++| +|+|+||+.+|++++++|++ ||||||||++.
T Consensus 308 iNyYt~~~v~~~~~~~~--~~--~~~~~~~--~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~ 377 (474)
T PRK09852 308 FSYYASRCASAEMNANN--SS--AANVVKS--LR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQK-PLFLVENGLGA 377 (474)
T ss_pred EccccCeecccCCCCCC--CC--cCCceec--cc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCC-CEEEeCCCCCC
Confidence 99999999975321100 00 0000000 01 13334677888 99999999999999999986 59999999998
Q ss_pred CCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCC-CccccceEEEcCC-----CCcccccc
Q 010049 432 PGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLG-YTSRFGIVYVDFT-----NLKRYPKM 505 (519)
Q Consensus 432 ~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~G-y~~rfGL~~VD~~-----~~~R~pK~ 505 (519)
.++.+.++.++|++||+||++||++|++||++||||+|||+|||||||||.+| |++|||||+||++ |++|+||+
T Consensus 378 ~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~ 457 (474)
T PRK09852 378 KDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKK 457 (474)
T ss_pred CCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceeccc
Confidence 66666678899999999999999999999999999999999999999999999 9999999999996 57999999
Q ss_pred hHHHHHHHHhhcC
Q 010049 506 SAYWFKQLLKRNK 518 (519)
Q Consensus 506 Sa~~y~~ii~~~~ 518 (519)
|++||+++|++|.
T Consensus 458 S~~wy~~ii~~ng 470 (474)
T PRK09852 458 SFWWYKKVIASNG 470 (474)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999874
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=2.8e-125 Score=1004.49 Aligned_cols=427 Identities=42% Similarity=0.795 Sum_probs=394.9
Q ss_pred CCCCccccccccCCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeecccccc
Q 010049 52 LPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRI 131 (519)
Q Consensus 52 FP~~FlwG~Atsa~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri 131 (519)
||++|+||+||||||+||+++++|||+|+||.+.|.++++.++.++++||||||||+|||++||+||+++|||||+||||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998788877777999999999999999999999999999999999999
Q ss_pred cccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEee
Q 010049 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (519)
Q Consensus 132 ~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~ 211 (519)
+|+|+|.+|+++++||+++|++|+++||+|+|||+|||+|+||+++ |||.|++++++|++||+.||++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997789999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred cccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCccccCCC
Q 010049 212 NEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLT 291 (519)
Q Consensus 212 NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~ 291 (519)
|||++++..||..|.+||+.++ ..+.++|+||+++|||+||++||++. |+++||++++..+++|.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~-----------~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD-----------LRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCC
Confidence 9999999999999999998653 24579999999999999999999975 689999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeeeecCCCCCCCCC
Q 010049 292 RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHLKQPKQV 371 (519)
Q Consensus 292 ~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~~~~~~~~ 371 (519)
++++|+.||+++++|.++||+||++.|+||+.|++.++ .+|.||++|++++++++||+|||||++.+|+...... .
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~ 301 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---A 301 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---C
Confidence 99999999999999999999999999999999999997 4799999999999999999999999999997632110 0
Q ss_pred CccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCchhhHHHHH
Q 010049 372 GYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYK 451 (519)
Q Consensus 372 ~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D~~Ri~yl~ 451 (519)
.. . . . .+..+.++++| +|+|+||+.+|+++++||++|||||||||++..++.+ +++++|++||+||+
T Consensus 302 ~~---~-----~-~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~-~g~~~D~~Ri~yl~ 368 (427)
T TIGR03356 302 GF---V-----E-V--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVT-DGEVHDPERIAYLR 368 (427)
T ss_pred Cc---c-----c-c--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCc-CCCcCCHHHHHHHH
Confidence 00 0 0 0 11123566889 9999999999999999999889999999999865554 67899999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCCCCcccccchHHHH
Q 010049 452 GYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFTNLKRYPKMSAYWF 510 (519)
Q Consensus 452 ~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~~~~R~pK~Sa~~y 510 (519)
+||++|++||+|||||+|||+|||+|||||.+||++|||||+||++|++|+||+|++||
T Consensus 369 ~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~wy 427 (427)
T TIGR03356 369 DHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.56 E-value=9.2e-13 Score=131.85 Aligned_cols=250 Identities=15% Similarity=0.184 Sum_probs=157.9
Q ss_pred ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcc--eEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010049 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP--YANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (519)
Q Consensus 127 ~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p--~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (519)
-|++++|++ |.+|++ ..+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.++++|+++
T Consensus 2 kW~~~ep~~-G~~n~~---~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPSR-GQFNFS---GADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCCC-CccChH---HHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCCc
Confidence 599999998 999995 4688999999999994 5567788999999742 2 5678899999999999999999
Q ss_pred cceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecC
Q 010049 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDF 284 (519)
Q Consensus 205 V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~ 284 (519)
|..|.++|||...... |... ...+.+.-.-. -..|.++.|+. .|+.++-+.. +
T Consensus 74 i~~wdV~NE~~~~~~~---------~~~~------------~~w~~~~G~~~--i~~af~~ar~~---~P~a~l~~Nd-y 126 (254)
T smart00633 74 IYAWDVVNEALHDNGS---------GLRR------------SVWYQILGEDY--IEKAFRYAREA---DPDAKLFYND-Y 126 (254)
T ss_pred ceEEEEeeecccCCCc---------cccc------------chHHHhcChHH--HHHHHHHHHHh---CCCCEEEEec-c
Confidence 9999999999742110 1110 00111110011 12345555654 3566654432 1
Q ss_pred ccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeeeecCC
Q 010049 285 VWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPH 364 (519)
Q Consensus 285 ~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~ 364 (519)
....+ .. ......++ .+.+ ..-...+|-||++... .. .
T Consensus 127 ~~~~~----~~---k~~~~~~~------------------v~~l------------~~~g~~iDgiGlQ~H~----~~-~ 164 (254)
T smart00633 127 NTEEP----NA---KRQAIYEL------------------VKKL------------KAKGVPIDGIGLQSHL----SL-G 164 (254)
T ss_pred CCcCc----cH---HHHHHHHH------------------HHHH------------HHCCCccceeeeeeee----cC-C
Confidence 11111 00 01111111 1111 1112347999995221 00 0
Q ss_pred CCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCch
Q 010049 365 LKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHDT 444 (519)
Q Consensus 365 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D~ 444 (519)
...|..|...|..+.+. + .||+|||.++...+ ...
T Consensus 165 -----------------------------------~~~~~~~~~~l~~~~~~-g-~pi~iTE~dv~~~~--------~~~ 199 (254)
T smart00633 165 -----------------------------------SPNIAEIRAALDRFASL-G-LEIQITELDISGYP--------NPQ 199 (254)
T ss_pred -----------------------------------CCCHHHHHHHHHHHHHc-C-CceEEEEeecCCCC--------cHH
Confidence 01246789999999765 4 68999999998742 115
Q ss_pred hhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCCCCcccccchHHH
Q 010049 445 TRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFTNLKRYPKMSAYW 509 (519)
Q Consensus 445 ~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~~~~R~pK~Sa~~ 509 (519)
.+.+++++++..+.+ . =.|.|.+.|.+.|...|..+ .+.||+.=| -+||++.++
T Consensus 200 ~qA~~~~~~l~~~~~---~-p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~-----~~~kpa~~~ 253 (254)
T smart00633 200 AQAADYEEVFKACLA---H-PAVTGVTVWGVTDKYSWLDG--GAPLLFDAN-----YQPKPAYWA 253 (254)
T ss_pred HHHHHHHHHHHHHHc---C-CCeeEEEEeCCccCCcccCC--CCceeECCC-----CCCChhhhc
Confidence 566677766666654 2 27899999999999999765 567887322 457777654
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.31 E-value=2.8e-12 Score=135.30 Aligned_cols=109 Identities=23% Similarity=0.389 Sum_probs=89.1
Q ss_pred hchHHHHHHHHhcCCCeeee-ecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhc-----
Q 010049 105 HRYKEDVDIMANLNFDAYRF-SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY----- 178 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rf-si~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~----- 178 (519)
.++++|+++||++|+|++|+ .++|++|||++ |.+|+ .++|++|+.+.++||++++.+.+...|.||.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46999999999999999996 56999999999 99999 5689999999999999999999999999998764
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhCC--CcceEEeecccchh
Q 010049 179 ----------NG-----LLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRVV 217 (519)
Q Consensus 179 ----------gg-----w~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~~~ 217 (519)
|+ ..+|...+.+.++++.++++|++ .|..|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 21 23467788899999999999998 58899999999743
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.08 E-value=2e-08 Score=103.92 Aligned_cols=251 Identities=17% Similarity=0.236 Sum_probs=140.1
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeecc---CCCcHHHHHhcCCCCC-
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH---YDLPEALEKKYNGLLS- 183 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H---~d~P~~l~~~~ggw~~- 183 (519)
++=+++||+.|+|++|+-+ | +.|...|.-|. +.-..+.++.+++||+.++++|- |.=|.--... ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCCC
Confidence 4457999999999999977 3 33443254454 67899999999999999999985 3334222122 57888
Q ss_pred --hhhHHHHHHHHHHHHHHhC---CCcceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhh
Q 010049 184 --KRVVKDFADYADFCFKTFG---DRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILS 258 (519)
Q Consensus 184 --~~~~~~F~~ya~~~~~~fg---d~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llA 258 (519)
.+..+.-.+|.+.+.+.+. -.++++++=||.+.-.+ +|-|.. ..+.-.-.+|.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHHH
Confidence 5677888888888888774 47899999999873221 333322 123333345555
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHH
Q 010049 259 HAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKE 338 (519)
Q Consensus 259 Ha~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~e 338 (519)
=. +++|+.. ++.+|.+-+... .|... ..||.|-+..
T Consensus 159 g~---~AVr~~~---p~~kV~lH~~~~---------~~~~~--------~~~~f~~l~~--------------------- 194 (332)
T PF07745_consen 159 GI---KAVREVD---PNIKVMLHLANG---------GDNDL--------YRWFFDNLKA--------------------- 194 (332)
T ss_dssp HH---HHHHTHS---STSEEEEEES-T---------TSHHH--------HHHHHHHHHH---------------------
T ss_pred HH---HHHHhcC---CCCcEEEEECCC---------CchHH--------HHHHHHHHHh---------------------
Confidence 44 4445443 567776555431 11111 1344444321
Q ss_pred HHHhhcCCccEEEEecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcC
Q 010049 339 EVKMVKGSIDFVGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYG 418 (519)
Q Consensus 339 e~~~ikgs~DFiGiNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~ 418 (519)
-....|.||++||.- | .-....|...|+.+.+||+
T Consensus 195 ----~g~d~DviGlSyYP~----------------------------------------w-~~~l~~l~~~l~~l~~ry~ 229 (332)
T PF07745_consen 195 ----AGVDFDVIGLSYYPF----------------------------------------W-HGTLEDLKNNLNDLASRYG 229 (332)
T ss_dssp ----TTGG-SEEEEEE-ST----------------------------------------T-ST-HHHHHHHHHHHHHHHT
T ss_pred ----cCCCcceEEEecCCC----------------------------------------C-cchHHHHHHHHHHHHHHhC
Confidence 123469999999941 1 1145789999999999997
Q ss_pred CCcEEEecCCCCCC-CCCCCCCCcCch--------hhHHHHHHHHHHHHHHHHc--CCceEEEEecccc
Q 010049 419 NPTVILSENGMDDP-GNVTLPKGLHDT--------TRINYYKGYLTQLKKAVDD--GANVVGYFAWSLL 476 (519)
Q Consensus 419 ~ppI~ITENG~~~~-~~~~~~~~~~D~--------~Ri~yl~~hL~~v~~Ai~~--Gv~V~GY~~WSl~ 476 (519)
+ ||+|+|.|++.. ++.+..+.+... .=++==++.|..+.+++.+ +-...|.|+|---
T Consensus 230 K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~ 297 (332)
T PF07745_consen 230 K-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPA 297 (332)
T ss_dssp --EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT
T ss_pred C-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccc
Confidence 5 899999998773 111000000000 0112223445666666654 6799999999544
No 17
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.03 E-value=6.5e-10 Score=111.24 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=90.8
Q ss_pred chHHHHHHHHhcCCCeeeeeccccccc-ccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCC-C
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIF-PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL-S 183 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~-P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~-~ 183 (519)
..++|++.||++|+|++|+-|.|..++ |.+.+.++...++.++++|+.+.++||.++++||+. |.|.... ++.. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 569999999999999999999998888 565456999999999999999999999999999986 6664322 2233 3
Q ss_pred hhhHHHHHHHHHHHHHHhCC--CcceEEeecccchh
Q 010049 184 KRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRVV 217 (519)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~~~ 217 (519)
....+.|.++.+.++++|++ .|..|-++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 45678899999999999944 78899999999854
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.02 E-value=6.2e-08 Score=108.63 Aligned_cols=263 Identities=17% Similarity=0.203 Sum_probs=152.7
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHh-------
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK------- 177 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~------- 177 (519)
..++.|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|+...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC------------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 4578999999999999999962 3433 467888999999877665443333332200
Q ss_pred cCCCC----ChhhHHHHHHHHHHHHHHhCC--CcceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHH
Q 010049 178 YNGLL----SKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIV 251 (519)
Q Consensus 178 ~ggw~----~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a 251 (519)
...|. +++..+.+.+-++.++++..+ -|-.|.+-||+..- .+ ....
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~------------------~~~~ 427 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQ------------------GARE 427 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------ch------------------hHHH
Confidence 01222 356778888989999999987 58899999996310 00 0111
Q ss_pred HHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhcc
Q 010049 252 AHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR 331 (519)
Q Consensus 252 ~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~ 331 (519)
. +...++++|+.- +.-.|..+.+... .+ . .
T Consensus 428 ~------~~~l~~~~k~~D---ptR~vt~~~~~~~-~~--~------------------------~-------------- 457 (604)
T PRK10150 428 Y------FAPLAELTRKLD---PTRPVTCVNVMFA-TP--D------------------------T-------------- 457 (604)
T ss_pred H------HHHHHHHHHhhC---CCCceEEEecccC-Cc--c------------------------c--------------
Confidence 1 223345556542 3333444332110 00 0 0
Q ss_pred CCCCCHHHHHhhcCCccEEEEecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHH
Q 010049 332 LPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALM 411 (519)
Q Consensus 332 lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~ 411 (519)
..+...+|++|+|.|..-+...... .-.-..+...+.
T Consensus 458 ---------~~~~~~~Dv~~~N~Y~~wy~~~~~~----------------------------------~~~~~~~~~~~~ 494 (604)
T PRK10150 458 ---------DTVSDLVDVLCLNRYYGWYVDSGDL----------------------------------ETAEKVLEKELL 494 (604)
T ss_pred ---------ccccCcccEEEEcccceecCCCCCH----------------------------------HHHHHHHHHHHH
Confidence 0011236999999986543211000 000012344455
Q ss_pred HHHhhcCCCcEEEecCCCCCCCC-CCC-CCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCC----
Q 010049 412 YIKGHYGNPTVILSENGMDDPGN-VTL-PKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGY---- 485 (519)
Q Consensus 412 ~i~~~Y~~ppI~ITENG~~~~~~-~~~-~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy---- 485 (519)
...+.| +.|++|||.|.+.... ... +..-..++...|+.+|+.. +++-=-|.|-|+|.+.|-- ...|.
T Consensus 495 ~~~~~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~----~~~~p~~~G~~iW~~~D~~-~~~g~~~~~ 568 (604)
T PRK10150 495 AWQEKL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRV----FDRVPAVVGEQVWNFADFA-TSQGILRVG 568 (604)
T ss_pred HHHHhc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHH----HhcCCceEEEEEEeeeccC-CCCCCcccC
Confidence 555566 4689999999654211 000 1112355666677666664 4444689999999999932 22221
Q ss_pred ccccceEEEcCCCCcccccchHHHHHHHHhh
Q 010049 486 TSRFGIVYVDFTNLKRYPKMSAYWFKQLLKR 516 (519)
Q Consensus 486 ~~rfGL~~VD~~~~~R~pK~Sa~~y~~ii~~ 516 (519)
....||+ +..|+||++++.||+.-+.
T Consensus 569 g~~~Gl~-----~~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 569 GNKKGIF-----TRDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred CCcceeE-----cCCCCChHHHHHHHHHhhc
Confidence 1356776 3458999999999988753
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.98 E-value=4.6e-08 Score=101.34 Aligned_cols=268 Identities=17% Similarity=0.226 Sum_probs=156.5
Q ss_pred ecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceE--eeccCCCcHHHHHhcCCCCChh---hHHHHHHHHHHHHH
Q 010049 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA--NLYHYDLPEALEKKYNGLLSKR---VVKDFADYADFCFK 199 (519)
Q Consensus 125 si~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~v--tL~H~d~P~~l~~~~ggw~~~~---~~~~F~~ya~~~~~ 199 (519)
..-|..++|.. |.+|++ -.+.+++-++++||++-- -+.|--.|.|+... .-+...+ ..+...+|.+.++.
T Consensus 43 ~~Kw~~~e~~~-g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~ 117 (320)
T PF00331_consen 43 EMKWGSIEPEP-GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVT 117 (320)
T ss_dssp TTSHHHHESBT-TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcCCC-CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHh
Confidence 35799999998 999995 479999999999999874 45577889999863 1233333 78899999999999
Q ss_pred HhCC--CcceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCe
Q 010049 200 TFGD--RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGR 277 (519)
Q Consensus 200 ~fgd--~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~ 277 (519)
+|++ +|..|=++|||..-.. .+-|.+ ....+.++=.-. -..|.+.-|+. .|+.+
T Consensus 118 ~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r------------~~~~~~~lG~~y--i~~aF~~A~~~---~P~a~ 173 (320)
T PF00331_consen 118 RYKDKGRIYAWDVVNEAIDDDG-------NPGGLR------------DSPWYDALGPDY--IADAFRAAREA---DPNAK 173 (320)
T ss_dssp HTTTTTTESEEEEEES-B-TTS-------SSSSBC------------TSHHHHHHTTCH--HHHHHHHHHHH---HTTSE
T ss_pred HhccccceEEEEEeeecccCCC-------cccccc------------CChhhhcccHhH--HHHHHHHHHHh---CCCcE
Confidence 9996 8999999999853321 000111 112222221000 11233333443 35665
Q ss_pred EEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecCCC
Q 010049 278 IGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTA 357 (519)
Q Consensus 278 IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~ 357 (519)
.=+..... ..+ +.+. .+. . |.+.+.++ ..++|=||++-.-
T Consensus 174 L~~NDy~~-~~~----------~k~~-~~~-~--------------lv~~l~~~------------gvpIdgIG~Q~H~- 213 (320)
T PF00331_consen 174 LFYNDYNI-ESP----------AKRD-AYL-N--------------LVKDLKAR------------GVPIDGIGLQSHF- 213 (320)
T ss_dssp EEEEESST-TST----------HHHH-HHH-H--------------HHHHHHHT------------THCS-EEEEEEEE-
T ss_pred EEeccccc-cch----------HHHH-HHH-H--------------HHHHHHhC------------CCccceechhhcc-
Confidence 54433222 111 1111 000 0 11111111 1247889886431
Q ss_pred eeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCC
Q 010049 358 YYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTL 437 (519)
Q Consensus 358 ~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~ 437 (519)
.. . . . |..+...|+++.+. + .||.|||.-+........
T Consensus 214 ---~~-------------------------------~---~-~--~~~i~~~l~~~~~~-G-l~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 214 ---DA-------------------------------G---Y-P--PEQIWNALDRFASL-G-LPIHITELDVRDDDNPPD 251 (320)
T ss_dssp ---ET-------------------------------T---S-S--HHHHHHHHHHHHTT-T-SEEEEEEEEEESSSTTSC
T ss_pred ---CC-------------------------------C---C-C--HHHHHHHHHHHHHc-C-CceEEEeeeecCCCCCcc
Confidence 00 0 0 1 78999999999654 5 689999998877421100
Q ss_pred CCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCcc-ccceEEEcCCCCcccccchHHHHHH
Q 010049 438 PKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTS-RFGIVYVDFTNLKRYPKMSAYWFKQ 512 (519)
Q Consensus 438 ~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~-rfGL~~VD~~~~~R~pK~Sa~~y~~ 512 (519)
.-.+..+.+++++.+..+.+.-.+ .|.|.+.|.+.|+.+|...... +=+|+. ..-.||++.+.+.+
T Consensus 252 --~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd-----~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 252 --AEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFD-----EDYQPKPAYDAIVD 318 (320)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB------TTSBB-HHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeEC-----CCcCCCHHHHHHHh
Confidence 123556777777777666654322 8999999999999999766333 335553 23468998877665
No 20
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.4e-08 Score=112.97 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=97.2
Q ss_pred chHHHHHHHHhcCCCeeeeec-ccccccccCCCCCChhHHHHHHHH-HHHHHHcCCcceEee-ccCCCcHHHHHhc----
Q 010049 106 RYKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQL-INYLLKRGITPYANL-YHYDLPEALEKKY---- 178 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi-~Wsri~P~~~g~~n~~gl~~Y~~l-i~~l~~~gi~p~vtL-~H~d~P~~l~~~~---- 178 (519)
-|++|++.||++|+|++|.++ +|++++|+. |++|+. +.|.. |+.+.+.||..++.. .....|.|+..+|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 489999999999999999966 999999999 999996 66777 999999999999999 8899999999876
Q ss_pred -----------CCCCChhhHH-HHHHHHHH----HHHH-hCC--CcceEEeecccch-hccccccCcccC
Q 010049 179 -----------NGLLSKRVVK-DFADYADF----CFKT-FGD--RVKNWMTFNEPRV-VAALGYDNGFFA 228 (519)
Q Consensus 179 -----------ggw~~~~~~~-~F~~ya~~----~~~~-fgd--~V~~W~t~NEp~~-~~~~gy~~G~~~ 228 (519)
|+|.+-.... .+..|++. +.+| ||+ .|-.|.+-||-.. .|++.|+...|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 6775433222 35555555 7888 777 6999999999876 667777666665
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=3.6e-06 Score=85.32 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=158.7
Q ss_pred ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe--eccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010049 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--LYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (519)
Q Consensus 127 ~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt--L~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (519)
-|.-|+|+. |.+|+++ =|.+.+-+++||+..--- +.|--.|.||.. --+..+...+...++...|++||.+.
T Consensus 68 Kwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYkg~ 141 (345)
T COG3693 68 KWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYKGS 141 (345)
T ss_pred ccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhccCc
Confidence 489999987 9999976 488899999999985442 346778999963 23777899999999999999999999
Q ss_pred cceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecC
Q 010049 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDF 284 (519)
Q Consensus 205 V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~ 284 (519)
|..|=+.|||-- ...++-...+.-+. ....| +.+ |.+.-|+ +.|+++.-+..-.
T Consensus 142 ~~sWDVVNE~vd-d~g~~R~s~w~~~~-------------~gpd~-----I~~----aF~~Are---adP~AkL~~NDY~ 195 (345)
T COG3693 142 VASWDVVNEAVD-DQGSLRRSAWYDGG-------------TGPDY-----IKL----AFHIARE---ADPDAKLVINDYS 195 (345)
T ss_pred eeEEEecccccC-CCchhhhhhhhccC-------------CccHH-----HHH----HHHHHHh---hCCCceEEeeccc
Confidence 999999999853 22222111111110 01112 222 2233344 3467776555433
Q ss_pred ccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCC-ccEEEEecCCCeeeecC
Q 010049 285 VWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGS-IDFVGINQYTAYYMYDP 363 (519)
Q Consensus 285 ~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs-~DFiGiNyYt~~~v~~~ 363 (519)
. ..++ +.+ +++.. |.+.|.+ ||. +|=+|++-= .+-
T Consensus 196 i-----e~~~----~kr---~~~~n--------------lI~~Lke-------------kG~pIDgiG~QsH----~~~- 231 (345)
T COG3693 196 I-----EGNP----AKR---NYVLN--------------LIEELKE-------------KGAPIDGIGIQSH----FSG- 231 (345)
T ss_pred c-----cCCh----HHH---HHHHH--------------HHHHHHH-------------CCCCccceeeeee----ecC-
Confidence 1 2222 111 11100 2222211 353 788887632 000
Q ss_pred CCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCc
Q 010049 364 HLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D 443 (519)
+| . .++-++..+....+. + .||+|||--|..... ..++..+
T Consensus 232 ---------------------------------~~-~-~~~~~~~a~~~~~k~-G-l~i~VTELD~~~~~P--~~~~p~~ 272 (345)
T COG3693 232 ---------------------------------DG-P-SIEKMRAALLKFSKL-G-LPIYVTELDMSDYTP--DSGAPRL 272 (345)
T ss_pred ---------------------------------CC-C-CHHHHHHHHHHHhhc-C-CCceEEEeeeeccCC--CCccHHH
Confidence 01 1 123334444444444 4 589999999887421 1122222
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccCCCccccceEEEcCC---CCcccccchHHHHHHHHh
Q 010049 444 TTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWRLGYTSRFGIVYVDFT---NLKRYPKMSAYWFKQLLK 515 (519)
Q Consensus 444 ~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~~Gy~~rfGL~~VD~~---~~~R~pK~Sa~~y~~ii~ 515 (519)
..+.++.+ ...-.......-+|.+.+.|.+.|+++|..|..++++= ++. +-.=.||+..++..+++.
T Consensus 273 ~~~~~~~~--~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~---~rPl~~D~n~~pKPa~~aI~e~la 342 (345)
T COG3693 273 YLQKAASR--AKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDG---LRPLLFDDNYQPKPAYKAIAEVLA 342 (345)
T ss_pred HHHHHHHH--HHHHHHHHhcccccceEEEeeeccCcccccCCccCcCC---CCCcccCCCCCcchHHHHHHHHhc
Confidence 22222221 11122223467779999999999999999998888851 220 123469999999887764
No 22
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.66 E-value=3.8e-07 Score=99.74 Aligned_cols=291 Identities=21% Similarity=0.309 Sum_probs=137.8
Q ss_pred chHHHHHHHH-hcCCCeeeee--c--ccccccc-cCCC--CCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHh
Q 010049 106 RYKEDVDIMA-NLNFDAYRFS--I--SWSRIFP-YGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (519)
Q Consensus 106 ry~eDi~lmk-~lG~~~~Rfs--i--~Wsri~P-~~~g--~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~ 177 (519)
.+++.++.++ ++|++.+||- + +..-..+ ++.| .+|+ .+.|.++|.|+++||+|+|.|-. .|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 3667777665 9999999985 2 2222222 2323 2788 67899999999999999999976 56655321
Q ss_pred ------cCCCCC-hhhHHHHHHHHHHH----HHHhCC-Ccc--eEEeecccchhccccccCcccCCCCCCcCCCCCCCCC
Q 010049 178 ------YNGLLS-KRVVKDFADYADFC----FKTFGD-RVK--NWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGN 243 (519)
Q Consensus 178 ------~ggw~~-~~~~~~F~~ya~~~----~~~fgd-~V~--~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~ 243 (519)
+.|+.+ |+..+.+.++++.+ .+|||. .|. +|.++|||++..+ +..|
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~------------- 174 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDG------------- 174 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-------------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCC-------------
Confidence 122332 45556666666555 555663 566 4589999986321 1111
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHHHHhhcCCCCeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChh
Q 010049 244 SATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKT 323 (519)
Q Consensus 244 s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~ 323 (519)
..+.|.- + ...+++++|+.. |..+||-.-.+ + ... ... .+
T Consensus 175 -~~~ey~~---l---y~~~~~~iK~~~---p~~~vGGp~~~-~-----~~~---~~~---~~------------------ 214 (486)
T PF01229_consen 175 -TPEEYFE---L---YDATARAIKAVD---PELKVGGPAFA-W-----AYD---EWC---ED------------------ 214 (486)
T ss_dssp --HHHHHH---H---HHHHHHHHHHH----TTSEEEEEEEE-T-----T-T---HHH---HH------------------
T ss_pred -CHHHHHH---H---HHHHHHHHHHhC---CCCcccCcccc-c-----cHH---HHH---HH------------------
Confidence 1122322 2 233556667654 68889854100 0 000 001 11
Q ss_pred hHHHhhccCCCCCHHHHHhhcCCccEEEEecCCCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccCh
Q 010049 324 MQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVP 403 (519)
Q Consensus 324 m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyYt~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P 403 (519)
+.+.+..+ ...+|||.+..|.......... .... .+ ... ..+.
T Consensus 215 ~l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~-----------~~~~--------~~---~~~--~~~~- 257 (486)
T PF01229_consen 215 FLEFCKGN------------NCPLDFISFHSYGTDSAEDINE-----------NMYE--------RI---EDS--RRLF- 257 (486)
T ss_dssp HHHHHHHC------------T---SEEEEEEE-BESESE-SS------------EEE--------EB-----H--HHHH-
T ss_pred HHHHHhcC------------CCCCCEEEEEecccccccccch-----------hHHh--------hh---hhH--HHHH-
Confidence 11112111 1346999999997543211100 0000 00 000 0112
Q ss_pred HHHHHHHHHHHhh-cCCCcEEEecCCCCCCCCCCCCCCcCch-hhHHHHHHHHHHHHHHHHcCCceEEEEeccccccccc
Q 010049 404 WGMYKALMYIKGH-YGNPTVILSENGMDDPGNVTLPKGLHDT-TRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEW 481 (519)
Q Consensus 404 ~Gl~~~L~~i~~~-Y~~ppI~ITENG~~~~~~~~~~~~~~D~-~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW 481 (519)
..+..+.+.+.+. +++.|+++||=...... ...++|+ ++..|+... +++ ..|..+-++.+|++.|.||=
T Consensus 258 ~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~----~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~sD~Fee 328 (486)
T PF01229_consen 258 PELKETRPIINDEADPNLPLYITEWNASISP----RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFSDRFEE 328 (486)
T ss_dssp HHHHHHHHHHHTSSSTT--EEEEEEES-SST----T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SBS---T
T ss_pred HHHHHHHHHHhhccCCCCceeecccccccCC----CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchhhhhhc
Confidence 2344443334333 55668999996655432 1234554 444444332 222 25666777899999999984
Q ss_pred cCC----CccccceEEEcCCCCcccccchHHHHHH
Q 010049 482 RLG----YTSRFGIVYVDFTNLKRYPKMSAYWFKQ 512 (519)
Q Consensus 482 ~~G----y~~rfGL~~VD~~~~~R~pK~Sa~~y~~ 512 (519)
..- +-.-|||+..+ .++|+|.+.|.=
T Consensus 329 ~~~~~~pf~ggfGLlt~~-----gI~KPa~~A~~~ 358 (486)
T PF01229_consen 329 NGTPRKPFHGGFGLLTKL-----GIPKPAYYAFQL 358 (486)
T ss_dssp TSS-SSSSSS-S-SEECC-----CEE-HHHHHHHH
T ss_pred cCCCCCceecchhhhhcc-----CCCchHHHHHHH
Confidence 221 44568998654 789999887753
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.0041 Score=62.69 Aligned_cols=301 Identities=16% Similarity=0.247 Sum_probs=164.3
Q ss_pred CCCCCCcccccccc-CCcCCCCcCCCCCcCchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeeccc
Q 010049 50 ESLPNGFVFGTATS-AYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISW 128 (519)
Q Consensus 50 ~~FP~~FlwG~Ats-a~QiEG~~~~dGk~~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~W 128 (519)
...|++|+.|+--| -+|+|-. .++..+ .+|- -++=++.+|+.|+|.+|+-| |
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~-----------------Gvkf~d-~ng~--------~qD~~~iLK~~GvNyvRlRv-w 85 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS-----------------GVKFFD-TNGV--------RQDALQILKNHGVNYVRLRV-W 85 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc-----------------CceEEc-cCCh--------HHHHHHHHHHcCcCeEEEEE-e
Confidence 35799999988644 3555542 222222 1221 13447999999999999966 2
Q ss_pred cccc-ccCC---CCCChhHHHHHHHHHHHHHHcCCcceEeec---cCCCcHHHHHhcCCCCCh------hhHHHHHHHHH
Q 010049 129 SRIF-PYGT---GKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYNGLLSK------RVVKDFADYAD 195 (519)
Q Consensus 129 sri~-P~~~---g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~---H~d~P~~l~~~~ggw~~~------~~~~~F~~ya~ 195 (519)
-.=- .+|. |.-|. ++---.+-+..+.+||++++..| ||.=|..-... -.|.+- +.+-.|.+|+-
T Consensus 86 ndP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kP-kaW~~l~fe~lk~avy~yTk~~l 162 (403)
T COG3867 86 NDPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKP-KAWENLNFEQLKKAVYSYTKYVL 162 (403)
T ss_pred cCCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCc-HHhhhcCHHHHHHHHHHHHHHHH
Confidence 1111 1111 22232 23445667788899999999987 45556442222 456652 23334455555
Q ss_pred HHHHHhCCCcceEEeecccchhccccccCcccCCCCCCcCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHhhcCCC
Q 010049 196 FCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQK 275 (519)
Q Consensus 196 ~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~g~s~~~~~~a~hn~llAHa~A~~~~r~~~~~~~~ 275 (519)
.-+++=|-..+.-++=||-+- |+ .||-|... .+.-+-.++.+ +++++|+. .+.
T Consensus 163 ~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~--------------~f~k~a~L~n~---g~~avrev---~p~ 215 (403)
T COG3867 163 TTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR--------------NFDKMAALLNA---GIRAVREV---SPT 215 (403)
T ss_pred HHHHHcCCCccceEeccccCC----ce---eccCCCCc--------------ChHHHHHHHHH---Hhhhhhhc---CCC
Confidence 555555667888999999752 22 14433221 12223334444 44556663 244
Q ss_pred CeEEEEecCccccCCCCCHHHHHHHHHHHhhhhccchhhhhccccChhhHHHhhccCCCCCHHHHHhhcCCccEEEEecC
Q 010049 276 GRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQY 355 (519)
Q Consensus 276 g~IGi~~~~~~~~P~~~~~~D~~Aa~r~~~f~~~~fldpl~~G~yP~~m~~~l~~~lp~ft~ee~~~ikgs~DFiGiNyY 355 (519)
-+| +++.. .|.+++. ..|+.|-|++- .-.+|.||.+||
T Consensus 216 ikv--~lHla--~g~~n~~-------------y~~~fd~ltk~-------------------------nvdfDVig~SyY 253 (403)
T COG3867 216 IKV--ALHLA--EGENNSL-------------YRWIFDELTKR-------------------------NVDFDVIGSSYY 253 (403)
T ss_pred ceE--EEEec--CCCCCch-------------hhHHHHHHHHc-------------------------CCCceEEeeecc
Confidence 444 44443 3433331 24555554421 124699999999
Q ss_pred CCeeeecCCCCCCCCCCccccCCcccccccCCccCCCCCCCCCcccChHHHHHHHHHHHhhcCCCcEEEecCCCCC--CC
Q 010049 356 TAYYMYDPHLKQPKQVGYQQDWNAGFAYEKNGVPIGPRANSYWLYNVPWGMYKALMYIKGHYGNPTVILSENGMDD--PG 433 (519)
Q Consensus 356 t~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~--~~ 433 (519)
. ++.. .=.-|...|..+..||++ .++|.|.+.+. ++
T Consensus 254 p--yWhg---------------------------------------tl~nL~~nl~dia~rY~K-~VmV~Etay~yTlEd 291 (403)
T COG3867 254 P--YWHG---------------------------------------TLNNLTTNLNDIASRYHK-DVMVVETAYTYTLED 291 (403)
T ss_pred c--cccC---------------------------------------cHHHHHhHHHHHHHHhcC-eEEEEEecceeeecc
Confidence 4 1111 113577789999999986 69999888733 11
Q ss_pred ------CCCCCC-----CcCchhhHHHHHHHHHHHHHHHHcCCceEEEEecccccccc-ccCCCccccceEE
Q 010049 434 ------NVTLPK-----GLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFE-WRLGYTSRFGIVY 493 (519)
Q Consensus 434 ------~~~~~~-----~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfE-W~~Gy~~rfGL~~ 493 (519)
.-+..+ .+.=.-+..++++-++.|... -+.+=.|.|+|---=+-- -.+|+...||.-|
T Consensus 292 gDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~~g~gwat~~~~~y 361 (403)
T COG3867 292 GDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVVLGSGWATSYAAKY 361 (403)
T ss_pred CCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceeccCCCccccchhhcc
Confidence 001111 111133567888877777653 344568999996432222 1234445444433
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.0004 Score=74.45 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccC--C-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhc---CCC
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYG--T-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY---NGL 181 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~--~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~---ggw 181 (519)
++|+..||+.|+|++|.-|.|-.+.+.+ . ...+...+.+.+++|+..++.||.+++.||+..-++-=.+.. +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855555542 1 223244455899999999999999999999876222211211 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCC--CcceEEeecccch
Q 010049 182 L-SKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRV 216 (519)
Q Consensus 182 ~-~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~~ 216 (519)
. ...+++++.+--+.++.+|++ .|-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 356779999999999999987 4667899999984
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.19 E-value=0.001 Score=68.99 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=72.8
Q ss_pred chHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec--------cCCCcHHHHHh
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------HYDLPEALEKK 177 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~--------H~d~P~~l~~~ 177 (519)
.|++-++.||++|+|++-+-|.|.-.||.+ |++|+.|..=.+.+|+.++++|+.+++-.= .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 488899999999999999999999999999 999999988889999999999998766321 23489999876
Q ss_pred cCCCC---ChhhHHHHHHHHHHHHHHhCC-------CcceEEeecccc
Q 010049 178 YNGLL---SKRVVKDFADYADFCFKTFGD-------RVKNWMTFNEPR 215 (519)
Q Consensus 178 ~ggw~---~~~~~~~F~~ya~~~~~~fgd-------~V~~W~t~NEp~ 215 (519)
.+... ++.+.+.-.+|.+.+++...+ -|..-++=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 33322 344555555566666555532 466677777743
No 26
>PLN03059 beta-galactosidase; Provisional
Probab=96.68 E-value=0.015 Score=66.70 Aligned_cols=110 Identities=10% Similarity=0.080 Sum_probs=87.8
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee--------ccCCCcHHHHH
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--------YHYDLPEALEK 176 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL--------~H~d~P~~l~~ 176 (519)
..|++=++.||++|+|++-.=|.|...||.+ |++|++|..=..++|+.+.+.|+-+++-. -.-.+|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 3588889999999999999999999999998 99999999999999999999998877642 25678999975
Q ss_pred hcCCC----CChhhHHHHHHHHHHHHHHhC---------CCcceEEeecccch
Q 010049 177 KYNGL----LSKRVVKDFADYADFCFKTFG---------DRVKNWMTFNEPRV 216 (519)
Q Consensus 177 ~~ggw----~~~~~~~~F~~ya~~~~~~fg---------d~V~~W~t~NEp~~ 216 (519)
. .|- .++.+.++-.+|-+.+++... .-|-..++=||-..
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 3 342 245666666677777777662 34777888888643
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.59 E-value=0.0031 Score=66.59 Aligned_cols=106 Identities=16% Similarity=0.311 Sum_probs=81.6
Q ss_pred hhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec-c-----------CCCc
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~-H-----------~d~P 171 (519)
+.-.+.+++.||++||+.+-..+-|.-+|+.+.+++|+. .|+++.+.+++.|++..+.|. | .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 447899999999999999999999999999976999994 599999999999999888763 3 4689
Q ss_pred HHHHHhc-----------C--------CCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccc
Q 010049 172 EALEKKY-----------N--------GLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (519)
Q Consensus 172 ~~l~~~~-----------g--------gw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~ 215 (519)
.|+.++. | -|....+++.+.+|-+...++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 9997531 2 25555569999999999999997764 5666654
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.57 E-value=0.014 Score=61.47 Aligned_cols=100 Identities=24% Similarity=0.352 Sum_probs=57.4
Q ss_pred HhcCCCeeeeec---cc------------cccc--ccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHh
Q 010049 115 ANLNFDAYRFSI---SW------------SRIF--PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (519)
Q Consensus 115 k~lG~~~~Rfsi---~W------------sri~--P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~ 177 (519)
+.||++.+||.| ++ .|.+ +..+|.+|+.+=+-=+.++++++++|++.++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 468999999988 33 3322 2233777776555567799999999999765 7888999998753
Q ss_pred c---CC-----CCChhhHHHHHHHHHHHHHHh---CCCcceEEeecccc
Q 010049 178 Y---NG-----LLSKRVVKDFADYADFCFKTF---GDRVKNWMTFNEPR 215 (519)
Q Consensus 178 ~---gg-----w~~~~~~~~F~~ya~~~~~~f---gd~V~~W~t~NEp~ 215 (519)
. |+ =+.++..+.|++|-..|+++| |=.+++--++|||+
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQ 184 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TT
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCC
Confidence 1 11 145678899999999999998 33799999999998
No 29
>PLN02803 beta-amylase
Probab=96.43 E-value=0.012 Score=63.87 Aligned_cols=107 Identities=18% Similarity=0.296 Sum_probs=82.7
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC------------CCcH
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY------------DLPE 172 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~------------d~P~ 172 (519)
.-.+..++.+|++||+.+-+.+=|.-+|+.+.+++|+. .|+++++.+++.|++..+.|.-. -||+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWE---GYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 44788999999999999999999999999877999995 59999999999999988776533 4999
Q ss_pred HHHHhc-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 173 ALEKKY-----------NG----------------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 173 ~l~~~~-----------gg----------------w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
|+.+.- .| +..+.-++-+.+|-+..-++|.+... -||.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 987631 12 11233457778888877777777554 47777654
No 30
>PLN00197 beta-amylase; Provisional
Probab=96.35 E-value=0.014 Score=63.53 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=82.9
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC------------CCcH
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY------------DLPE 172 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~------------d~P~ 172 (519)
.-.+..++.+|.+||+.+-+.+=|.-+|+.+.+++|+. .|+++++.+++.|++..+.|.-. -||+
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 34788999999999999999999999999877999995 59999999999999988776533 5999
Q ss_pred HHHHhc-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 173 ALEKKY-----------NGL----------------LSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 173 ~l~~~~-----------ggw----------------~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
|+.+.- .|- ..+.-++-+.+|-+..-++|.+... -||.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 987631 121 1122367888888888777777654 36777553
No 31
>PLN02161 beta-amylase
Probab=96.20 E-value=0.024 Score=61.30 Aligned_cols=111 Identities=14% Similarity=0.292 Sum_probs=86.1
Q ss_pred CchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC------------
Q 010049 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY------------ 168 (519)
Q Consensus 101 ~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~------------ 168 (519)
..+..-.+..++.+|.+||+.+-+.+=|.-+|+.+.+++|+. .|+++++.+++.|++..+.|.-.
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 466677889999999999999999999999999877999995 59999999999999988777533
Q ss_pred CCcHHHHHh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 169 DLPEALEKK--------Y---NG----------------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 169 d~P~~l~~~--------~---gg----------------w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
-||+|+.+. | .| +..+.-++-+.+|-+..-++|.+... -||.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 399998753 0 12 11223457788888888888877654 36777553
No 32
>PLN02801 beta-amylase
Probab=96.18 E-value=0.025 Score=61.18 Aligned_cols=107 Identities=14% Similarity=0.271 Sum_probs=81.2
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC------------CCcH
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY------------DLPE 172 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~------------d~P~ 172 (519)
.-.+..++.+|.+||+.+-+.+=|.-+|..+.+++|+. .|+++++.+++.|++..+.|.-. -||+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 34788999999999999999999999999877999995 59999999999999887766533 5999
Q ss_pred HHHHhc-----------CC---------------C-CChhhHHHHHHHHHHHHHHhCCCcceEEeecccc
Q 010049 173 ALEKKY-----------NG---------------L-LSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (519)
Q Consensus 173 ~l~~~~-----------gg---------------w-~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~ 215 (519)
|+.+.- .| + ..+.-++.+.+|-+..-++|.+...- -||.|..
T Consensus 114 WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~ 182 (517)
T PLN02801 114 WVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIE 182 (517)
T ss_pred HHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEE
Confidence 988531 12 1 12234688888888888888775421 2455543
No 33
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.91 E-value=0.038 Score=56.49 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=62.4
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcC---
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYN--- 179 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~g--- 179 (519)
....++.|+++||++|+|++|++. .|.. .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc------------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 356889999999999999999843 2322 4567788899998877654322111110 01
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCC--CcceEEeeccc
Q 010049 180 -GLLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEP 214 (519)
Q Consensus 180 -gw~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp 214 (519)
--.+++..+.+.+-++.+++++.+ -|-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 012577888888888889999877 69999999997
No 34
>PLN02705 beta-amylase
Probab=95.78 E-value=0.035 Score=61.08 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=80.5
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC------------CC
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY------------DL 170 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~------------d~ 170 (519)
+-.-.+..++.||.+||+.+-+.+=|.-+|+.+.+++|+. .|+++++.+++.|++..+.|.-. -|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWS---GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 3455788999999999999999999999999877999995 59999999999999987776533 59
Q ss_pred cHHHHHh--------c---CCCC----------------ChhhHHHHHHHHHHHHHHhCCCcceEEeecccc
Q 010049 171 PEALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (519)
Q Consensus 171 P~~l~~~--------~---ggw~----------------~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~ 215 (519)
|+|+.+. | .|-. .+.-++.+.+|.+..-++|.+.+.- -||.|..
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 413 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVE 413 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEE
Confidence 9998853 0 1211 1234577777777777777664311 2455543
No 35
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=95.69 E-value=0.062 Score=53.45 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEecccccccc
Q 010049 404 WGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFE 480 (519)
Q Consensus 404 ~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfE 480 (519)
.++...|..++++|+ .||.|||-|+.... ..-+++...+|+++-+..+ +.---|.+|+..+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~-kPIWITEf~~~~~~-----~~~~~~~~~~fl~~~~~~l----d~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYG-KPIWITEFGCWNGG-----SQGSDEQQASFLRQALPWL----DSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeecccCCC-----CCCCHHHHHHHHHHHHHHH----hcCCCeeEEEecccccccC
Confidence 567888999999999 58999999986521 1224566666665555554 4557899999998544433
No 36
>PLN02905 beta-amylase
Probab=95.52 E-value=0.037 Score=61.11 Aligned_cols=101 Identities=14% Similarity=0.272 Sum_probs=78.3
Q ss_pred CchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC------------
Q 010049 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY------------ 168 (519)
Q Consensus 101 ~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~------------ 168 (519)
..+..-.+..++.+|.+||+.+-+.+=|.-+|+.+.+++|+. .|+++++.+++.|++..+.|.-.
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs---gY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN---GYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 345666888999999999999999999999999877999995 59999999999999988776533
Q ss_pred CCcHHHHHh--------c---CCCC----------------ChhhHHHHHHHHHHHHHHhCCC
Q 010049 169 DLPEALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDR 204 (519)
Q Consensus 169 d~P~~l~~~--------~---ggw~----------------~~~~~~~F~~ya~~~~~~fgd~ 204 (519)
-||+|+.+. | .|-. .+.-++-+.+|-+..-++|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599998763 1 1211 1334577777777777777654
No 37
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.15 E-value=0.13 Score=52.64 Aligned_cols=103 Identities=12% Similarity=0.158 Sum_probs=63.4
Q ss_pred hHHHHHHHHhcCCCeeeeec--ccccc-c-------c--cCC------CCCChhHHHHHHHHHHHHHHcCCcceEeeccC
Q 010049 107 YKEDVDIMANLNFDAYRFSI--SWSRI-F-------P--YGT------GKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi--~Wsri-~-------P--~~~------g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~ 168 (519)
++.=++..|+-|+|.+|+.+ .|... . | ..+ ..+|++=.++.+++|+.|.++||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447788999999999999 55443 1 1 110 1378888999999999999999999876655
Q ss_pred CCcHHHHHhcCCCCC---hhhHHHHHHHHHHHHHHhCCC-cceEEeeccc
Q 010049 169 DLPEALEKKYNGLLS---KRVVKDFADYADFCFKTFGDR-VKNWMTFNEP 214 (519)
Q Consensus 169 d~P~~l~~~~ggw~~---~~~~~~F~~ya~~~~~~fgd~-V~~W~t~NEp 214 (519)
+.|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 11 44433 334677788999999999997 3779998884
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.39 E-value=0.23 Score=46.80 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=68.5
Q ss_pred hchHHHHHHHHhcCCCeeeeeccccccc-----ccCC--CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHh
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIF-----PYGT--GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~-----P~~~--g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~ 177 (519)
.+|+++++.||++|++++=+- |+... |+.- +.+.....+....+++++.+.||+++|.|+.. |.|.+..
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~~ 95 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQG 95 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhcc
Confidence 479999999999999987432 44432 2220 12333445789999999999999999999863 3444421
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhCC--CcceEEeecccc
Q 010049 178 YNGLLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPR 215 (519)
Q Consensus 178 ~ggw~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~ 215 (519)
-..| -++.=..-++.+.++||. .+..|-+-.|+.
T Consensus 96 ~~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 96 DLDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred CHHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 0112 233334467778888887 467777777764
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.50 E-value=0.46 Score=53.09 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=86.8
Q ss_pred chHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe--------eccCCCcHHHHHh
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--------LYHYDLPEALEKK 177 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt--------L~H~d~P~~l~~~ 177 (519)
.|++=|+.+|++|+|+...=+-|.-.+|.+ |++|++|.-=..++|..+.++|+=+++- -.+-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 578889999999999999999999999999 9999999887888999999999865443 2367789998865
Q ss_pred cCC---CCChhhHHHHHHHHHHHHHHh-------CCCcceEEeecccc
Q 010049 178 YNG---LLSKRVVKDFADYADFCFKTF-------GDRVKNWMTFNEPR 215 (519)
Q Consensus 178 ~gg---w~~~~~~~~F~~ya~~~~~~f-------gd~V~~W~t~NEp~ 215 (519)
-|. =.|+.+..++.+|.+.++... |.-|-.-++=||-.
T Consensus 129 pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 222 135778888888888888733 33477778888865
No 40
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.60 E-value=0.36 Score=57.79 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=63.6
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec---cCCCcHHHHHhcC
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYN 179 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~---H~d~P~~l~~~~g 179 (519)
....+++||++||++|+|++|+| ..|.. ..+.+.|-+.||=++--.. |.-.|. ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~~-- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPM---NR-- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccc---cC--
Confidence 45678999999999999999996 23432 3456788889997765532 211111 00
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCC--CcceEEeecccc
Q 010049 180 GLLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPR 215 (519)
Q Consensus 180 gw~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~ 215 (519)
...+++..+.+.+=++.+++|..+ -|-.|...||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 012456667777778889999987 589999999974
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.04 E-value=0.7 Score=55.41 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=63.3
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee----ccCCCcHHHHHhc
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL----YHYDLPEALEKKY 178 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL----~H~d~P~~l~~~~ 178 (519)
....+++|+++||++|+|++|+| ..|.. ..+.+.|-+.||-++--. +.|.....+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~---- 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVGDI---- 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccccc----
Confidence 35678999999999999999996 24554 456778889999766543 112111000
Q ss_pred CCC--CChhhHHHHHHHHHHHHHHhCC--CcceEEeeccc
Q 010049 179 NGL--LSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEP 214 (519)
Q Consensus 179 ggw--~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp 214 (519)
.+ .++...+.|.+=++.++++..+ -|-.|..-||.
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 2345566777778889999987 58999999996
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.02 E-value=1.2 Score=51.89 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=66.2
Q ss_pred CchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCC
Q 010049 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (519)
Q Consensus 101 ~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~gg 180 (519)
+-.+..+++|+++||++|+|++|.| -.|+. ..+.+.|-+.||=++=-..+.. +++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~~--------~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIET--------HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchhh--------cCC
Confidence 3445669999999999999999998 55665 5566777888997665333211 133
Q ss_pred CCChhhHHHHHHHHHHHHHHhCC--CcceEEeecccc
Q 010049 181 LLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPR 215 (519)
Q Consensus 181 w~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~ 215 (519)
...++..+....=++.++++-.+ -|-.|..=||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 45566667777778888888877 689999999955
No 43
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.26 E-value=0.15 Score=54.83 Aligned_cols=109 Identities=16% Similarity=0.073 Sum_probs=80.1
Q ss_pred hHHHHHHHHhcCCCeeeeeccc-ccccccCCCCCChhH-HHHHHHHHHHHHHcCCcceEeec----cCCCcHHHHHhcCC
Q 010049 107 YKEDVDIMANLNFDAYRFSISW-SRIFPYGTGKVNWKG-VAYYNQLINYLLKRGITPYANLY----HYDLPEALEKKYNG 180 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~W-sri~P~~~g~~n~~g-l~~Y~~li~~l~~~gi~p~vtL~----H~d~P~~l~~~~gg 180 (519)
-+.|++.|+.+|++..|.+|-= .- .-+..|..|.+. ..+...+++.+...+|+.++||. |+.--.|-..=.||
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEd-c~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGED-CRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcc-hhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4678999999999999999632 22 222227788776 88999999999999999999976 33222221100011
Q ss_pred ------CCChhhHHHHHHHHHHHHHHhCC--CcceEEeecccch
Q 010049 181 ------LLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRV 216 (519)
Q Consensus 181 ------w~~~~~~~~F~~ya~~~~~~fgd--~V~~W~t~NEp~~ 216 (519)
...++++.-|.+|.+.+++.|+. .+..|..-|||.+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 23467888899999999999986 5789999999765
No 44
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=83.38 E-value=1.5 Score=44.68 Aligned_cols=101 Identities=23% Similarity=0.187 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCchhh---------HHHHHHHHHHHHHHHH-cCCceEEEEe
Q 010049 403 PWGMYKALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHDTTR---------INYYKGYLTQLKKAVD-DGANVVGYFA 472 (519)
Q Consensus 403 P~Gl~~~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D~~R---------i~yl~~hL~~v~~Ai~-~Gv~V~GY~~ 472 (519)
+..+...+...+.. .+.|+++||.|...... .+...+..+ ..|+.++.. .++. ..-.+.|-++
T Consensus 183 ~~~~~~~~~~~~~~-~~kP~i~sEyg~~~~~~---~g~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~~g~~~ 255 (298)
T PF02836_consen 183 PEDFEKYLEDWYKY-PDKPIIISEYGADAYNS---KGGDSEYWQLWSWYEEYQGAFIWDYQD---QAIQRRDPYVAGEFY 255 (298)
T ss_dssp HHHHHHHHHHHHHH-CTS-EEEEEESEBBSST----TTHHHHHHHHHHCTTEEEEEESHSBH---HHEEEEETTESEEEE
T ss_pred HHHHHHHHHhcccc-CCCCeEehhcccccccc---CCCccccccccccCchhhhhhhhhhhh---hhhccccccccceee
Confidence 44566666554444 44589999999866321 111111111 111112222 2221 3344688899
Q ss_pred cccccccc-ccCCCccccceEEEcCCCCcccccchHHHHHHHHh
Q 010049 473 WSLLDNFE-WRLGYTSRFGIVYVDFTNLKRYPKMSAYWFKQLLK 515 (519)
Q Consensus 473 WSl~DnfE-W~~Gy~~rfGL~~VD~~~~~R~pK~Sa~~y~~ii~ 515 (519)
|+..|-.. -...-..-.||+. ..|+||++++.||++-+
T Consensus 256 w~~~Df~~~~~~~~~~~nGlv~-----~dR~pK~~~~~~k~~~~ 294 (298)
T PF02836_consen 256 WTGFDFGTEPTDYEFEYNGLVD-----YDRRPKPAYYEYKSQWS 294 (298)
T ss_dssp EETTTTSCSSBTGGGGSBESBE-----TTSEBBHHHHHHHHHHH
T ss_pred ecceEeccCCCCCeeeeccEEC-----CcCCcCHHHHHHHHHhh
Confidence 99888543 1111112238874 45899999999998754
No 45
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=82.85 E-value=2.3 Score=45.17 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=72.1
Q ss_pred HHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCC-Ch-hhHHHHH
Q 010049 114 MANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL-SK-RVVKDFA 191 (519)
Q Consensus 114 mk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~-~~-~~~~~F~ 191 (519)
-+|+|++..|+---|.=++.. =-+++ .++++++|.+.+.|+.-+.+-.||+.+.--+..|-+=. .+ ...+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468899999888888722222 23455 78999999999999555556678888876655443322 22 4789999
Q ss_pred HHHHHHHHHhCC---CcceEEeecccchh
Q 010049 192 DYADFCFKTFGD---RVKNWMTFNEPRVV 217 (519)
Q Consensus 192 ~ya~~~~~~fgd---~V~~W~t~NEp~~~ 217 (519)
.++..|+.++|- +.-....+||||..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999996 34566788999865
No 46
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=78.05 E-value=17 Score=37.54 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=61.6
Q ss_pred hhchHHHHHHHHhcCCCeeeeec---ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCC
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSI---SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi---~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~gg 180 (519)
..||.+--++++++|+|+.-+.= .-..+-| +-++-..++-+.++..||++++++. |..|.-| ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~--------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP--------EYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST--------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH--------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 45889999999999999876532 2222222 2356688999999999999999974 6777654 55
Q ss_pred -----CCChhhHHHHHHHHHHHHHHhCC
Q 010049 181 -----LLSKRVVKDFADYADFCFKTFGD 203 (519)
Q Consensus 181 -----w~~~~~~~~F~~ya~~~~~~fgd 203 (519)
-++++++.++.+=|+.+.+...|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999876
No 47
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=77.91 E-value=7.9 Score=40.06 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=51.0
Q ss_pred chHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChh
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~ 185 (519)
-.+.||.+||+||+|+.|+= -|-|+. =.+.-++.|.+.||=+++.|... ..-+... .-|. .=
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~----------nHd~CM~~~~~aGIYvi~Dl~~p--~~sI~r~-~P~~-sw 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK----------NHDECMSAFADAGIYVILDLNTP--NGSINRS-DPAP-SW 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES-BT--TBS--TT-S------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC----------CHHHHHHHHHhCCCEEEEecCCC--CccccCC-CCcC-CC
Confidence 57999999999999999972 233433 26888999999999999988653 2222211 1110 01
Q ss_pred hHHHHHHHHHHHHHHhC--CCcceEEeeccc
Q 010049 186 VVKDFADYADFCFKTFG--DRVKNWMTFNEP 214 (519)
Q Consensus 186 ~~~~F~~ya~~~~~~fg--d~V~~W~t~NEp 214 (519)
..+.|.+|... ++.|. +.|-.+..=||-
T Consensus 116 ~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 116 NTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp -HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred CHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 23445555444 44444 356677777773
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=77.24 E-value=4.8 Score=37.77 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=43.3
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccc--cCCC-------CCC--hhHHHHHHHHHHHHHHcCCcceEee
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFP--YGTG-------KVN--WKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P--~~~g-------~~n--~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
.+....+-+..+++||++++-++=-+..... ...| .+| .-..+=+++||++|+++||++++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3555677788999999999988765544431 1101 121 1134568999999999999999864
No 49
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=75.11 E-value=4.9 Score=41.69 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhh--cCCCcEEEecCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceE-----EEEeccccc
Q 010049 405 GMYKALMYIKGH--YGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVV-----GYFAWSLLD 477 (519)
Q Consensus 405 Gl~~~L~~i~~~--Y~~ppI~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~-----GY~~WSl~D 477 (519)
.+.+.+...-++ +++.||+|||.|++..... .... .==+.+.+.+.+.+.+|.+-+ -+|+-+++|
T Consensus 211 a~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~--~a~~------~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~Fd 282 (310)
T PF00332_consen 211 AMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP--GATP------ENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFD 282 (310)
T ss_dssp HHHHHHHHHHHTTT-TT--EEEEEE---SSSST--TCSH------HHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB-
T ss_pred HHHHHHHHHHHHhCCCCceeEEeccccccCCCC--CCCc------chhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEec
Confidence 344555555444 5577999999999985320 0011 112444555555555666653 477788887
Q ss_pred cccccCC--CccccceEEEcC
Q 010049 478 NFEWRLG--YTSRFGIVYVDF 496 (519)
Q Consensus 478 nfEW~~G--y~~rfGL~~VD~ 496 (519)
- .|..| .+..|||++-|.
T Consensus 283 E-~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 283 E-NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp --TTSSSSGGGGG--SB-TTS
T ss_pred C-cCCCCCcccceeeeECCCC
Confidence 6 46554 578999998663
No 50
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=69.51 E-value=18 Score=36.14 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCcceEeeccC--------------CCcHHHHHh----------------cCC----CCChh-----
Q 010049 145 AYYNQLINYLLKRGITPYANLYHY--------------DLPEALEKK----------------YNG----LLSKR----- 185 (519)
Q Consensus 145 ~~Y~~li~~l~~~gi~p~vtL~H~--------------d~P~~l~~~----------------~gg----w~~~~----- 185 (519)
+.++.+|+.-+++|.++|+||.=. ..|.|=..+ .+| ..+|.
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 678999999999999999998632 122110000 011 22333
Q ss_pred -hHHHHHHHHHHHHHHhCCC-----cceEEeecccchhc
Q 010049 186 -VVKDFADYADFCFKTFGDR-----VKNWMTFNEPRVVA 218 (519)
Q Consensus 186 -~~~~F~~ya~~~~~~fgd~-----V~~W~t~NEp~~~~ 218 (519)
..+.| +..+..+||.. |++|..-|||.+..
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~ 139 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWH 139 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhc
Confidence 44444 66677777765 99999999998653
No 51
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=69.05 E-value=21 Score=36.35 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=72.6
Q ss_pred CchhhccccCCCcccCCCCCCcCCchhhchHHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHH
Q 010049 78 PSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLK 156 (519)
Q Consensus 78 ~S~WD~~~~~~~~i~~~~~~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~ 156 (519)
.+.|+=|....+. ..+..+.-.+.++++=|+.++++|+..+=+..-|+.-.+... .......-....++++-.++
T Consensus 9 k~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 3566655542221 122334456888999999999999999999999997333221 11111111346899999999
Q ss_pred cCCcceEeeccCC------CcHHHHHh---c---C------C---CCChhhHHHHHHHHHHHHHH
Q 010049 157 RGITPYANLYHYD------LPEALEKK---Y---N------G---LLSKRVVKDFADYADFCFKT 200 (519)
Q Consensus 157 ~gi~p~vtL~H~d------~P~~l~~~---~---g------g---w~~~~~~~~F~~ya~~~~~~ 200 (519)
+|+.+++-.+|-+ +=.-+++. | | | -.+.+.++.+.+.++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999988866 31112221 1 1 1 24567888888888888764
No 52
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.57 E-value=15 Score=38.84 Aligned_cols=103 Identities=12% Similarity=0.176 Sum_probs=59.5
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCC---CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCC
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT---GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS 183 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~---g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~ 183 (519)
=+|.++.|+++|++.+-+++ .-+-++-- |+.. ..+-+.+.|+.+++.|+..+-.-.-+++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli~GlPg----------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLMFGLPN----------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCC-----------
Confidence 36889999999999555554 33333210 3321 134578899999999997553333455663
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCc
Q 010049 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNG 225 (519)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G 225 (519)
++.+.|.+-.+.+.+.=-+.|......-+|+.....-+..|
T Consensus 163 -qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g 203 (374)
T PRK05799 163 -QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENG 203 (374)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcC
Confidence 23455666666655432255555555557765443333333
No 53
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=63.12 E-value=45 Score=33.99 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P 171 (519)
+.|++++++.|++..++.++=|...-... +.--.+.++-..++++.++++|+++.+++-+|+-|
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 56999999999999999996665544422 44456788899999999999999999999987744
No 54
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.65 E-value=24 Score=34.91 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhh
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~ 186 (519)
++|++.+++.|++..|++++-+-..-.-. +.=.+..++-..+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999997763211110 12122356678899999999999999998665544 123
Q ss_pred HHHHHHHHHHHHHHhC
Q 010049 187 VKDFADYADFCFKTFG 202 (519)
Q Consensus 187 ~~~F~~ya~~~~~~fg 202 (519)
.+.+.++++.+. ++|
T Consensus 145 ~~~l~~~~~~~~-~~g 159 (265)
T cd03174 145 PEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHH-HcC
Confidence 455666666654 344
No 55
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=60.25 E-value=7.1 Score=38.89 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-C-------CC--ChhHHHHHHHHHHHHHHcCCcceEeec
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-G-------KV--NWKGVAYYNQLINYLLKRGITPYANLY 166 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g-------~~--n~~gl~~Y~~li~~l~~~gi~p~vtL~ 166 (519)
.+-|+-+|+||+++.-++=-+. -|.+. | .+ ..-..+=+++||++|.++||++|+.+-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999998875444 22111 1 11 122345689999999999999999753
No 56
>PRK12313 glycogen branching enzyme; Provisional
Probab=60.19 E-value=25 Score=40.04 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=64.2
Q ss_pred hhchHHHH-HHHHhcCCCeeeeecc--------c-------ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe--e
Q 010049 104 YHRYKEDV-DIMANLNFDAYRFSIS--------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--L 165 (519)
Q Consensus 104 yhry~eDi-~lmk~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt--L 165 (519)
|.-..+.+ .-+|+||++++=+.=- | -.|.|.- |. .+=+++||++|.++||++|+. .
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 44455674 8999999999875432 2 1223332 33 244899999999999999997 4
Q ss_pred ccCCCcH----HHH--------H---h-cCC-------CCChhhHHHHHHHHHHHHHHhCCCcceEEee
Q 010049 166 YHYDLPE----ALE--------K---K-YNG-------LLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (519)
Q Consensus 166 ~H~d~P~----~l~--------~---~-~gg-------w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~ 211 (519)
.|..... ++. + . +.+ +.++++++.+.+-++.-+++|| |+.|-..
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R~D 309 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLRVD 309 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEEEc
Confidence 4653211 110 0 0 012 3468888999998888898886 5566553
No 57
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=59.35 E-value=27 Score=34.92 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
.+|++...+.|++..|+.++.|-+.-... +.=-.++++-..++++.++++|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 78999999999999999998886643321 33345678889999999999999877655
No 58
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=58.94 E-value=24 Score=37.35 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=48.0
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~ 166 (519)
.++|++.+.+.|++.+|+.++-|.+.-... +.-..+.++-..+.++.++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 489999999999999999997776654321 333455778889999999999999888764
No 59
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=58.43 E-value=40 Score=34.68 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=51.4
Q ss_pred HHHHhcCCCeeeeecc--cccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCC------
Q 010049 112 DIMANLNFDAYRFSIS--WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS------ 183 (519)
Q Consensus 112 ~lmk~lG~~~~Rfsi~--Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~------ 183 (519)
+.+++.|++.+-++.. -..-.|.-.|.............|..|+++|++++|++ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5677889998887653 22222221011110012456778999999999999987 55554
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 010049 184 KRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg 202 (519)
+..++.|++....+.++||
T Consensus 86 ~~~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYG 104 (294)
T ss_pred cccHHHHHHHHHHHHHHhC
Confidence 4578888888888888887
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=57.98 E-value=31 Score=39.99 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=63.5
Q ss_pred hhchHHHH-HHHHhcCCCeeeeecc--------c-------ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee--
Q 010049 104 YHRYKEDV-DIMANLNFDAYRFSIS--------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL-- 165 (519)
Q Consensus 104 yhry~eDi-~lmk~lG~~~~Rfsi~--------W-------sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL-- 165 (519)
|.-..+.+ .-+|+||+++.=+.=- | -.|.|.- |. .+=+++||++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 33334453 7789999999866542 2 1223332 43 3448999999999999999974
Q ss_pred ccCCCc-----------HHHHH-----hcCC-------CCChhhHHHHHHHHHHHHHHhCCCcceEEee
Q 010049 166 YHYDLP-----------EALEK-----KYNG-------LLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (519)
Q Consensus 166 ~H~d~P-----------~~l~~-----~~gg-------w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~ 211 (519)
.|+... .+... .+.. +.++++++.+.+-++.-+++|| |+.|-..
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R~D 404 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLRVD 404 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEEEC
Confidence 465321 11000 0112 3468888999998888898885 6666554
No 61
>PLN02361 alpha-amylase
Probab=57.85 E-value=22 Score=38.29 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=46.5
Q ss_pred chhhchHHHHHHHHhcCCCeeeeecccccccccCCC-----CCCh--hHHHHHHHHHHHHHHcCCcceEe--ecc
Q 010049 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-----KVNW--KGVAYYNQLINYLLKRGITPYAN--LYH 167 (519)
Q Consensus 102 d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g-----~~n~--~gl~~Y~~li~~l~~~gi~p~vt--L~H 167 (519)
.+|....+-+.-+++||+++.=++=...-.-+.|-. .+|. -..+=+++||++|+++||++++. +.|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 478899999999999999999777644333232210 1111 12345899999999999999985 456
No 62
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=56.94 E-value=45 Score=34.52 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=65.2
Q ss_pred hhchHHHHHHHHhcCCCeeeeeccc-------ccccccCC---CC--CChhHHHHHHHHHHHHHHcCCcceEee----cc
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISW-------SRIFPYGT---GK--VNWKGVAYYNQLINYLLKRGITPYANL----YH 167 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~W-------sri~P~~~---g~--~n~~gl~~Y~~li~~l~~~gi~p~vtL----~H 167 (519)
-...++=++.|+++|+|++=+-+.+ |.++|... |. .+ .|.+....+|++++++||+...-+ ..
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCC-CCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 3456788899999999986665533 33444221 11 12 245678999999999999988554 11
Q ss_pred -------CCCcHHHHHhc-----------CC--CCC---hhhHHHHHHHHHHHHHHhC
Q 010049 168 -------YDLPEALEKKY-----------NG--LLS---KRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 168 -------~d~P~~l~~~~-----------gg--w~~---~~~~~~F~~ya~~~~~~fg 202 (519)
-..|.|+.... ++ |+| |++.+...+-++.++++|.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 12466654211 11 555 6889999999999999995
No 63
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=56.49 E-value=36 Score=38.10 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=56.7
Q ss_pred hhchHHHHHHHHhcCCCeeeeec--------cc-------ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee--c
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSI--------SW-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi--------~W-------sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL--~ 166 (519)
+.-..+-+.-+|+||+++.-+.= .| -.+.|.- |. .+=+++||++|.++||++|+.+ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 45556778999999999986643 12 1222221 33 3458999999999999999874 4
Q ss_pred cCCC---------cHHHHHh-cCCC------CCh---hhHHHHHHHHHHHHHHhC
Q 010049 167 HYDL---------PEALEKK-YNGL------LSK---RVVKDFADYADFCFKTFG 202 (519)
Q Consensus 167 H~d~---------P~~l~~~-~ggw------~~~---~~~~~F~~ya~~~~~~fg 202 (519)
|... | |+... ..+| .++ .+.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 6431 2 22211 1234 234 666677766666666664
No 64
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=55.36 E-value=42 Score=30.33 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCeeeeecc--cc-cccccCCCC--CChhHHHHHHHHHHHHHHcCCcceEeecc
Q 010049 109 EDVDIMANLNFDAYRFSIS--WS-RIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYH 167 (519)
Q Consensus 109 eDi~lmk~lG~~~~Rfsi~--Ws-ri~P~~~g~--~n~~gl~~Y~~li~~l~~~gi~p~vtL~H 167 (519)
+=++.||++|+|+.-+... +- --.|+..|. ...+ -+...++|++|+++||++++=+-.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 3468899999999999332 11 113332221 1222 378999999999999999886544
No 65
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.84 E-value=23 Score=35.75 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeecc
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H 167 (519)
.+|++.+.+.|++.+|+.++=|...-... +.=-.+.++-..+++..++++|+++.+++-.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 77999999999999999986554433321 3333567889999999999999999988753
No 66
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=51.79 E-value=42 Score=35.44 Aligned_cols=84 Identities=12% Similarity=0.002 Sum_probs=62.9
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeecc-CCCcHHHHHhcCCCCCh
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLSK 184 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H-~d~P~~l~~~~ggw~~~ 184 (519)
=++|++.+.+.|++.+.+.++=|...-... +.=-.+.++-+.++++.++++|+++.+++.. |..|. .|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC--
Confidence 589999999999999999987666655432 4445778899999999999999999877764 55552 2322
Q ss_pred hhHHHHHHHHHHHHH
Q 010049 185 RVVKDFADYADFCFK 199 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~ 199 (519)
.++.+.++++.+.+
T Consensus 195 -~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 -PPSKVAYVAKELYD 208 (347)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35666777777654
No 67
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.10 E-value=1.2e+02 Score=31.38 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcceEeeccC---CCcHHHH--Hh-c-------------------C---CCCChhhHHHHHHHHHHHHH
Q 010049 148 NQLINYLLKRGITPYANLYHY---DLPEALE--KK-Y-------------------N---GLLSKRVVKDFADYADFCFK 199 (519)
Q Consensus 148 ~~li~~l~~~gi~p~vtL~H~---d~P~~l~--~~-~-------------------g---gw~~~~~~~~F~~ya~~~~~ 199 (519)
++||++|+++|++.++.+.-+ +.|..-+ ++ | + .++||+.++.|....+.+
T Consensus 73 ~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-- 150 (317)
T cd06598 73 AGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-- 150 (317)
T ss_pred HHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh--
Confidence 689999999999988877644 3343211 10 0 0 366899999998877665
Q ss_pred HhCCCcc-eEEeecccchh
Q 010049 200 TFGDRVK-NWMTFNEPRVV 217 (519)
Q Consensus 200 ~fgd~V~-~W~t~NEp~~~ 217 (519)
+...|+ +|+=+|||..+
T Consensus 151 -~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 151 -IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred -hhCCccEEEecCCCcccc
Confidence 333454 57778899644
No 68
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=50.91 E-value=74 Score=35.29 Aligned_cols=97 Identities=16% Similarity=0.260 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEecccc-c---cccccCC
Q 010049 409 ALMYIKGHYGNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLL-D---NFEWRLG 484 (519)
Q Consensus 409 ~L~~i~~~Y~~ppI~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~-D---nfEW~~G 484 (519)
.|..++++|++..|+-||.-.+..... ....+..-.|. .++...+...+..| +.||..|.|+ | ..-|..+
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~-~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD-TSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS--SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc-cccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCC
Confidence 567899999988999999866552100 00011112233 23455566667777 5799999985 3 2234444
Q ss_pred CccccceEEEcCCCCcccccchHHHHHHH
Q 010049 485 YTSRFGIVYVDFTNLKRYPKMSAYWFKQL 513 (519)
Q Consensus 485 y~~rfGL~~VD~~~~~R~pK~Sa~~y~~i 513 (519)
+... .+-||.++.+-+..+..+.++.+
T Consensus 393 ~~d~--~iivd~~~~~~~~~p~yY~~gHf 419 (496)
T PF02055_consen 393 FCDA--PIIVDSDTGEFYKQPEYYAMGHF 419 (496)
T ss_dssp -B----SEEEEGGGTEEEE-HHHHHHHHH
T ss_pred CCCc--eeEEEcCCCeEEEcHHHHHHHHH
Confidence 4433 34478765555555666665554
No 69
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.63 E-value=41 Score=35.55 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhh
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~ 186 (519)
++||+.+.+.|++.+|+.++-|.+.-... +.=-.+.++-..+.|+.++++|+++.+++.. .+.. .
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~---~ 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRA---D 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCC---C
Confidence 89999999999999999998776543321 3334567888999999999999997765432 2222 3
Q ss_pred HHHHHHHHHHHHHHhC
Q 010049 187 VKDFADYADFCFKTFG 202 (519)
Q Consensus 187 ~~~F~~ya~~~~~~fg 202 (519)
.+.+.++++.+.+ .|
T Consensus 141 ~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 PDFLVELAEVAAE-AG 155 (365)
T ss_pred HHHHHHHHHHHHH-cC
Confidence 4666666666543 45
No 70
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=50.57 E-value=21 Score=39.99 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=39.7
Q ss_pred hhchHHHHHHHHhcCCCeeeeecccc--------------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISWS--------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~Ws--------------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
+.-..+-++-+++||+++.=++=-.. +|.|.- | ..+=++.||+++.++||++|+.+
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-G-----t~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-G-----TMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 44456778899999999986653322 222221 2 23558999999999999999974
No 71
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=49.79 E-value=36 Score=34.39 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=39.4
Q ss_pred hHHHHHHHHhcCCCeeeeecccc-cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe
Q 010049 107 YKEDVDIMANLNFDAYRFSISWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Ws-ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt 164 (519)
-+|.++.||++|++.+-++++-+ .+.+.-.+..+ .+.+.+.++.++++||.+.++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s---~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHT---YDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCC---HHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999999822 13333112223 366789999999999985443
No 72
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=49.15 E-value=8.9 Score=31.81 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=14.2
Q ss_pred HHHHhCC--CcceEEeecc-cc
Q 010049 197 CFKTFGD--RVKNWMTFNE-PR 215 (519)
Q Consensus 197 ~~~~fgd--~V~~W~t~NE-p~ 215 (519)
++++||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677876 8999999999 66
No 73
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.99 E-value=80 Score=32.96 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHH
Q 010049 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKD 189 (519)
Q Consensus 110 Di~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~ 189 (519)
.++.+|++|.++..|=+=|. |++.-.+|..=.++-+++.++|++++|-=++-+..+|.+.- +. .+.++...
T Consensus 110 S~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~yak~ 180 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYAKV 180 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHHhh
Confidence 36889999999999998887 66545588888899999999999999998888877665531 11 12222222
Q ss_pred HHHHHHHHHHHhCC---CcceEEe
Q 010049 190 FADYADFCFKTFGD---RVKNWMT 210 (519)
Q Consensus 190 F~~ya~~~~~~fgd---~V~~W~t 210 (519)
.-+.+-..++.|++ .|+.|=+
T Consensus 181 kP~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 181 KPHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEE
Confidence 23333445777766 4666644
No 74
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=48.87 E-value=52 Score=36.16 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=42.0
Q ss_pred hhhchHHH-----HHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 010049 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (519)
Q Consensus 103 ~yhry~eD-----i~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P 171 (519)
.|..|.+| ++.+.+.|++.+|+.++-+.+ +-....++.++++|++...++.+-.-|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 35567888 999999999999999866542 335677788888888877777654445
No 75
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.84 E-value=58 Score=32.88 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhH
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~ 187 (519)
.+|++...+.|++..|+++..+ .++-..++++.++++|+++.+++.+..- -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------CCH
Confidence 6899999999999999987432 3566899999999999999998876321 235
Q ss_pred HHHHHHHHHHHHHhC
Q 010049 188 KDFADYADFCFKTFG 202 (519)
Q Consensus 188 ~~F~~ya~~~~~~fg 202 (519)
+.+.++++.+.+ .|
T Consensus 138 ~~~~~~~~~~~~-~g 151 (266)
T cd07944 138 EELLELLELVNE-IK 151 (266)
T ss_pred HHHHHHHHHHHh-CC
Confidence 667777777654 44
No 76
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.65 E-value=81 Score=32.98 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHH
Q 010049 109 EDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVK 188 (519)
Q Consensus 109 eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~ 188 (519)
-+++.+|++|.++..|=+=|. |+++-.+|..=.++-+++.++|++++|-=++-+..+|.+.- +. .+++...
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d~----~~~eyak 181 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--DN----NSAAYAK 181 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--cc----ccHHHHh
Confidence 356899999999999998887 66545688888899999999999999999998888765531 11 2233332
Q ss_pred HHHHHHHHHHHHhCC---CcceEEe
Q 010049 189 DFADYADFCFKTFGD---RVKNWMT 210 (519)
Q Consensus 189 ~F~~ya~~~~~~fgd---~V~~W~t 210 (519)
..-+.+-..++.|++ .|+.|=+
T Consensus 182 ~kP~~V~~amkefs~~~~gvDVlKv 206 (329)
T PRK04161 182 LKPHKVNGAMKVFSDKRFGVDVLKV 206 (329)
T ss_pred hChHHHHHHHHHhccCCCCCcEEEE
Confidence 223334455677775 4666644
No 77
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=48.59 E-value=1.3e+02 Score=30.47 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccC
Q 010049 109 EDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (519)
Q Consensus 109 eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~ 168 (519)
.+++.+++.|++..|+.++=|-..-... |.--.+.++-..+.++.+++.|+++.++..+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 6899999999999999886554432211 33346678889999999999999998876665
No 78
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=48.58 E-value=91 Score=31.90 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=62.9
Q ss_pred hHHHHHHHHhcC--CCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccC---CCcHHHHHh---c
Q 010049 107 YKEDVDIMANLN--FDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y 178 (519)
Q Consensus 107 y~eDi~lmk~lG--~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~---d~P~~l~~~---~ 178 (519)
.+|-++.+++.| ++++=+.+.|.+-.-.+.=.+|++-.---+.+|++|+++|+++++.+.-+ +.|..-+-+ |
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 567788889888 45566666777422111112333222235799999999999987766533 223221110 0
Q ss_pred ------------------C---CCCChhhHHHHHHHHHHHHHHhCCCcce-EEeeccc
Q 010049 179 ------------------N---GLLSKRVVKDFADYADFCFKTFGDRVKN-WMTFNEP 214 (519)
Q Consensus 179 ------------------g---gw~~~~~~~~F~~ya~~~~~~fgd~V~~-W~t~NEp 214 (519)
+ .+.||+.++.|.+..+.+.+ .| |++ |+=+||+
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 1 16789999999887776554 44 554 4447886
No 79
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=48.14 E-value=63 Score=32.92 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=41.0
Q ss_pred CCcCCchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 010049 97 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (519)
Q Consensus 97 ~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~ 166 (519)
.|-.|-+-..|.-|+++++.-+. ..|.= | -|. .-..++...+.+.|++.++.++
T Consensus 55 ~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-----------~-sDC---n~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 55 DDGTCKSADQVASDLELLASYTH-SIRTY-----------G-SDC---NTLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCCcCHHHHHhHHHHhccCCc-eEEEe-----------e-ccc---hhhhhhHHHHHhcCceEEEEEe
Confidence 34578888899999999998876 44431 3 344 3368899999999999999875
No 80
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.06 E-value=57 Score=33.36 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=62.5
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeecc-CCCcHHHHHhcCCCCCh
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLSK 184 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H-~d~P~~l~~~~ggw~~~ 184 (519)
-.+|+++..+.|++.+++.++=|...-... +.=-.+.++-..+.|+.++++|+++.+++.. |..|. .|..
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~-- 152 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV-- 152 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC--
Confidence 489999999999999999986655432221 4445567888999999999999999887764 55552 3433
Q ss_pred hhHHHHHHHHHHHHHH
Q 010049 185 RVVKDFADYADFCFKT 200 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~ 200 (519)
..+.+.++++.+.+.
T Consensus 153 -~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 -PPEAVADVAERLFAL 167 (287)
T ss_pred -CHHHHHHHHHHHHHc
Confidence 357777778777643
No 81
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=47.61 E-value=1.1e+02 Score=32.17 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCcCCchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHH
Q 010049 97 GDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK 176 (519)
Q Consensus 97 ~d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~ 176 (519)
+-+|.=||+ |+--+. ..+.|++.+|+. + |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 345666775 444443 346799999863 3 44432 367999999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHH
Q 010049 177 KYNGLLSKRVVKDFADYADFC 197 (519)
Q Consensus 177 ~~ggw~~~~~~~~F~~ya~~~ 197 (519)
+||+-..+..++--.++++.|
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 987655555666666666654
No 82
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.04 E-value=30 Score=37.99 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=44.1
Q ss_pred chhhchHHHHHHHHhcCCCeeeeecccccc--------cccCC---------CCCChh--HHHHHHHHHHHHHHcCCcce
Q 010049 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRI--------FPYGT---------GKVNWK--GVAYYNQLINYLLKRGITPY 162 (519)
Q Consensus 102 d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri--------~P~~~---------g~~n~~--gl~~Y~~li~~l~~~gi~p~ 162 (519)
|.|.-..+-++-+++||+++.=++=...-. -|..- |.+|.. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556777899999999998777643321 11100 012211 23458999999999999999
Q ss_pred Ee--eccCC
Q 010049 163 AN--LYHYD 169 (519)
Q Consensus 163 vt--L~H~d 169 (519)
+. +.|-.
T Consensus 99 ~D~V~NH~~ 107 (479)
T PRK09441 99 ADVVLNHKA 107 (479)
T ss_pred EEECccccc
Confidence 96 45643
No 83
>PLN00196 alpha-amylase; Provisional
Probab=46.84 E-value=32 Score=37.38 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=44.9
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCCC-----CCCh---hHHHHHHHHHHHHHHcCCcceEe--eccC
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-----KVNW---KGVAYYNQLINYLLKRGITPYAN--LYHY 168 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g-----~~n~---~gl~~Y~~li~~l~~~gi~p~vt--L~H~ 168 (519)
+|....+.+.-+++||+++.=++=......+.|-. .+|. -..+=+++||+++.++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 35557888999999999999888644333222210 1221 12245899999999999999986 5564
No 84
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=46.52 E-value=26 Score=39.27 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=40.4
Q ss_pred hhchHHHHHHHHhcCCCeeeeecccccccccCC-C-------CCCh--hHHHHHHHHHHHHHHcCCcceEee
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-G-------KVNW--KGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g-------~~n~--~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
+.-..+.++-+++||+++.=++=-+.. |... | .+|+ -..+=+++||+++.++||++|+.+
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444568899999999999877553311 2111 1 1111 123558999999999999999864
No 85
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.43 E-value=38 Score=33.31 Aligned_cols=52 Identities=10% Similarity=0.363 Sum_probs=41.0
Q ss_pred hhchHHHHHHHHhcCCCeeee----------------------ecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcc
Q 010049 104 YHRYKEDVDIMANLNFDAYRF----------------------SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rf----------------------si~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p 161 (519)
--.-+.=|++||+||.++..| ++ | +||+| .+|. +.+..++..+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GIdl---~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GIDL---DNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--CccH---HhHHHHHHHHHHcCCCe
Confidence 345678899999999998876 33 3 68875 4775 67899999999999986
Q ss_pred eE
Q 010049 162 YA 163 (519)
Q Consensus 162 ~v 163 (519)
++
T Consensus 206 vi 207 (236)
T TIGR03581 206 VI 207 (236)
T ss_pred ec
Confidence 64
No 86
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=46.10 E-value=58 Score=34.65 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
++|++.+.+.|++.+|++++-|.+.-... +.--.+.++-..+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88999999999999999997776643321 43446678889999999999999988864
No 87
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=45.97 E-value=93 Score=32.57 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCcceEeeccC-CCcHHHHH--hcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccchhcccc
Q 010049 148 NQLINYLLKRGITPYANLYHY-DLPEALEK--KYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALG 221 (519)
Q Consensus 148 ~~li~~l~~~gi~p~vtL~H~-d~P~~l~~--~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~g 221 (519)
+.|+++|++.|++.++.+.-+ ..-..+.. .+-.|.||+.+++|.+..+.+.+ .|-. -.|+=+|||.+++..+
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~-~~W~DmnEp~~~~~~~ 141 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLE-FVWQDMTTPAIMPSYG 141 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCc-eeecCCCCcccccCCC
Confidence 689999999999876654311 10000000 01247889999988776654433 3422 3888899999876533
No 88
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.62 E-value=1.8e+02 Score=29.02 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~ 166 (519)
.+|++.+++.|++.+|+..+-+.+. -..+.++.++++|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999988776532 247789999999999988884
No 89
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.59 E-value=62 Score=32.82 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeec-cCCCcHHHHHhcCCCCChh
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY-HYDLPEALEKKYNGLLSKR 185 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~-H~d~P~~l~~~~ggw~~~~ 185 (519)
++|++.+.+.|++.+++.++=|...-... +.--.+.++...+.++.++++|+++.+++. .|+.|. +|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC---
Confidence 78999999999999999986665432211 333466788999999999999999988877 466662 3322
Q ss_pred hHHHHHHHHHHHHH
Q 010049 186 VVKDFADYADFCFK 199 (519)
Q Consensus 186 ~~~~F~~ya~~~~~ 199 (519)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 35667777777654
No 90
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=44.80 E-value=65 Score=36.57 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=56.1
Q ss_pred hhchHHH-----HHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCc----HHH
Q 010049 104 YHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EAL 174 (519)
Q Consensus 104 yhry~eD-----i~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P----~~l 174 (519)
|.+|.+| ++..++.|++.+|++.+.+-+ +-....|+.++++|....+++.+-+.| ..+
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~ 157 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTW 157 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHH
Confidence 5555555 999999999999999755443 234556666677776655555443334 222
Q ss_pred HHh----------------cCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 175 EKK----------------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 175 ~~~----------------~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
.+. ..|-..|..+ .+..+.+-+++ +..-...+.|-..+
T Consensus 158 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~---~~lv~~lk~~~-~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 158 VDLAKQLEDMGVDSLCIKDMAGLLKPYAA---YELVSRIKKRV-DVPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhc-CCeEEEEECCCCch
Confidence 111 0455555433 34444555566 33456777787764
No 91
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.10 E-value=1.9e+02 Score=30.34 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec--cCCCcHHH
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--HYDLPEAL 174 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~--H~d~P~~l 174 (519)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|++..+++. |...|..+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 689999999999999998755443 1247899999999999988774 43344433
No 92
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=42.79 E-value=1.1e+02 Score=31.56 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCC-eeeeec-ccc-cccc-c-CCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCC
Q 010049 108 KEDVDIMANLNFD-AYRFSI-SWS-RIFP-Y-GTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (519)
Q Consensus 108 ~eDi~lmk~lG~~-~~Rfsi-~Ws-ri~P-~-~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~ 182 (519)
+|.+++|+++|++ .+=+++ +-+ ++.- . ++| .+. +-+.+.++.++++||.+.+.+ =+.+|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~---~~~~~ai~~~~~~Gi~v~~~~-i~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STF---EDFIRAAELARKYGAGVKAYL-LFKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCH---HHHHHHHHHHHHcCCcEEEEE-EecCCC--------CC
Confidence 7889999999998 466666 322 2221 1 112 233 568899999999999855554 334552 12
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCcccCC
Q 010049 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAP 229 (519)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~~P 229 (519)
..+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23677888888887765 45888887777777765555566677765
No 93
>PRK12568 glycogen branching enzyme; Provisional
Probab=42.73 E-value=71 Score=37.15 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=62.6
Q ss_pred hhchHHH-HHHHHhcCCCeeeeec--------ccc-------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec-
Q 010049 104 YHRYKED-VDIMANLNFDAYRFSI--------SWS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY- 166 (519)
Q Consensus 104 yhry~eD-i~lmk~lG~~~~Rfsi--------~Ws-------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~- 166 (519)
|.-..+. |.-+|+||++++=+.= +|. .+.|.- |. .+=++.||++|.++||++++.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444444 6889999999875432 342 122221 43 34589999999999999999743
Q ss_pred -cCCC----------cHHHHH------hcCC-------CCChhhHHHHHHHHHHHHHHhCCCcceEEee
Q 010049 167 -HYDL----------PEALEK------KYNG-------LLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (519)
Q Consensus 167 -H~d~----------P~~l~~------~~gg-------w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~ 211 (519)
|+.. +...+. .+.. +.++++.+.+.+=|..-+++|+ |+.|-..
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh--IDG~R~D 408 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH--LDGLRVD 408 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC--ceEEEEc
Confidence 4322 110100 0112 3467888999999999999986 5555543
No 94
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=42.66 E-value=1.2e+02 Score=34.64 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=63.7
Q ss_pred hhchHHHH-HHHHhcCCCeeeee-cccc--------------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec-
Q 010049 104 YHRYKEDV-DIMANLNFDAYRFS-ISWS--------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY- 166 (519)
Q Consensus 104 yhry~eDi-~lmk~lG~~~~Rfs-i~Ws--------------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~- 166 (519)
|.-..+.+ .-+|+||+++.=+. |..+ .+.|.- |. .+=+++||++|.++||++|+.+-
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 34445564 88999999999873 3322 111111 22 23489999999999999999743
Q ss_pred -cCCC-----------cHHHHH-----hcCC-------CCChhhHHHHHHHHHHHHHHhCCCcceEEee
Q 010049 167 -HYDL-----------PEALEK-----KYNG-------LLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (519)
Q Consensus 167 -H~d~-----------P~~l~~-----~~gg-------w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~ 211 (519)
|... |.+... .+.. +.++++++.+.+-++.-+++|+ |+.|-..
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~--iDG~R~D 295 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH--IDGLRVD 295 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC--CcEEEEc
Confidence 5431 111110 0011 2468899999999999999986 5566554
No 95
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.84 E-value=89 Score=34.19 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=60.3
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcH----HHHH---h--
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----ALEK---K-- 177 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~----~l~~---~-- 177 (519)
-++||+.+.+.|++.+|+.++-+.+. | ....|+.++++|+++.+++..-+-|. .+.+ +
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~-------n------~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR-------N------LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH-------H------HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 36778999999999999998665542 1 46688999999998888877766562 1111 1
Q ss_pred -----------cCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 178 -----------~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
-.|..+|.-+ .+..+.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~~v---~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 165 EMGADSICIKDMAGILTPYVA---YELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HcCCCEEEEcCCCCCCCHHHH---HHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 0566666443 334445555564 3345667666654
No 96
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.27 E-value=1.7e+02 Score=30.48 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCcceEeeccCCC-----cHHHHHh---c---------------------CCCCChhhHHHHHHHHHHHH
Q 010049 148 NQLINYLLKRGITPYANLYHYDL-----PEALEKK---Y---------------------NGLLSKRVVKDFADYADFCF 198 (519)
Q Consensus 148 ~~li~~l~~~gi~p~vtL~H~d~-----P~~l~~~---~---------------------ggw~~~~~~~~F~~ya~~~~ 198 (519)
+.||++|+++|++.++.+.-+-. |..-+-+ | -.+.||+.++.|.+..+...
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 67899999999998777664432 2221111 0 13788999999999988776
Q ss_pred HHhCC-CcceEEeecccchhc
Q 010049 199 KTFGD-RVKNWMTFNEPRVVA 218 (519)
Q Consensus 199 ~~fgd-~V~~W~t~NEp~~~~ 218 (519)
...+. -+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 65433 346789999998764
No 97
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=40.79 E-value=33 Score=38.23 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=39.4
Q ss_pred chHHHHHHHHhcCCCeeeeeccc--------------ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe--eccC
Q 010049 106 RYKEDVDIMANLNFDAYRFSISW--------------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--LYHY 168 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~W--------------sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt--L~H~ 168 (519)
-..+-++-+++||+++.=++=-. -+|.|.- | ..+=+++||+++.++||++|+. +.|-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-G-----t~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-G-----TIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-C-----CHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 34666889999999988665322 1222221 2 2355899999999999999986 4463
No 98
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=40.61 E-value=1.2e+02 Score=32.09 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=59.6
Q ss_pred hHHHHHHHHhcCCCeeeeec-cc-ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCCh
Q 010049 107 YKEDVDIMANLNFDAYRFSI-SW-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi-~W-sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
=+|.+++|+++|++.+-+++ += .++...-....+. +-..+.++.+++.|+..+..-.-+++|.
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPg------------ 163 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNE---EDVYEAIANAKKAGFDNISIDLIYALPG------------ 163 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCC------------
Confidence 37899999999999777777 32 2344332122333 5578899999999997543333456663
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCc
Q 010049 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNG 225 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G 225 (519)
++.+.|.+=.+.+.+.=-+.|......-+|......-+..|
T Consensus 164 qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g 204 (377)
T PRK08599 164 QTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKG 204 (377)
T ss_pred CCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcC
Confidence 23344555555543322234444444456664443333333
No 99
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=40.39 E-value=81 Score=34.71 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=43.8
Q ss_pred hhhchHHH-----HHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcH
Q 010049 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 172 (519)
Q Consensus 103 ~yhry~eD-----i~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~ 172 (519)
.|..|.+| ++++++-|++.+|..-. .|. ++-....|+.+++.|....+++.+=+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~-----------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDA-----------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEccc-----------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 47778888 99999999999998652 232 24467788888888888888888876663
No 100
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.03 E-value=1.1e+02 Score=32.38 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=45.8
Q ss_pred HHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCC
Q 010049 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL 170 (519)
Q Consensus 111 i~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~ 170 (519)
++.++++|.+++-+-+-|. |+....+|.+-+++..++.++|.+.||.-++-+.-++.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 5779999999999999887 55324467888899999999999999998885433333
No 101
>PRK14706 glycogen branching enzyme; Provisional
Probab=40.01 E-value=77 Score=36.29 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=52.8
Q ss_pred HHHHhcCCCeeeeecccccccccC-C-C--CCC-------hhHHHHHHHHHHHHHHcCCcceEee--ccCCC--------
Q 010049 112 DIMANLNFDAYRFSISWSRIFPYG-T-G--KVN-------WKGVAYYNQLINYLLKRGITPYANL--YHYDL-------- 170 (519)
Q Consensus 112 ~lmk~lG~~~~Rfsi~Wsri~P~~-~-g--~~n-------~~gl~~Y~~li~~l~~~gi~p~vtL--~H~d~-------- 170 (519)
.-+|+||++++-+.=- --.|.. . | ..| .-..+=++.||++|.++||++++.+ .|+..
T Consensus 175 ~ylk~lG~t~velmPv--~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGV--MEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccch--hcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 5689999999765421 001111 0 1 001 0112448999999999999999864 35321
Q ss_pred ---cHH-HHHhcC----CC-------CChhhHHHHHHHHHHHHHHhC
Q 010049 171 ---PEA-LEKKYN----GL-------LSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 171 ---P~~-l~~~~g----gw-------~~~~~~~~F~~ya~~~~~~fg 202 (519)
|.+ ..+... .| .++++++.+.+=|+.-+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 111 010001 12 257888989999999999996
No 102
>PLN02784 alpha-amylase
Probab=38.86 E-value=65 Score=38.03 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=47.2
Q ss_pred chhhchHHHHHHHHhcCCCeeeeecccccccccCCC-----CCChh--HHHHHHHHHHHHHHcCCcceEe--ecc
Q 010049 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-----KVNWK--GVAYYNQLINYLLKRGITPYAN--LYH 167 (519)
Q Consensus 102 d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g-----~~n~~--gl~~Y~~li~~l~~~gi~p~vt--L~H 167 (519)
.+|....+.+.-+++||++++=++=.-.-..+.|-. .+|.+ ..+=++.||++|+++||++|+. +.|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 478889999999999999999777654433333211 11111 2345899999999999999986 556
No 103
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=38.82 E-value=71 Score=37.84 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=43.6
Q ss_pred hhchHHHHHHHHhcCCCeeeeec---------------ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee--c
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSI---------------SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi---------------~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL--~ 166 (519)
+....+-+.-+++||+++.=+|= .+.+|.|.- | +.+=+++++++++++||++|+.+ .
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 44578888999999999875554 344455543 3 23558999999999999999864 4
Q ss_pred cCC
Q 010049 167 HYD 169 (519)
Q Consensus 167 H~d 169 (519)
|-.
T Consensus 93 H~~ 95 (879)
T PRK14511 93 HMA 95 (879)
T ss_pred ccc
Confidence 543
No 104
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.63 E-value=2.2e+02 Score=29.15 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=55.9
Q ss_pred cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCC---cHHHH-Hhc------CCC--C---------ChhhHH
Q 010049 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEALE-KKY------NGL--L---------SKRVVK 188 (519)
Q Consensus 130 ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~---P~~l~-~~~------ggw--~---------~~~~~~ 188 (519)
+..|...|-++.+-++-++++.+.++++|-+.++=|.|..- |.... ... ..+ . =.++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 33444336788899999999999999999999999998431 10000 000 000 0 135888
Q ss_pred HHHHHHHHHHHHhCCCcceEEeecccchhccccccCccc
Q 010049 189 DFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF 227 (519)
Q Consensus 189 ~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~ 227 (519)
.|++-|+.+.+. | |....+.+..||+...|
T Consensus 142 ~~~~aA~~a~~a-G--------fDgveih~~~gyL~~qF 171 (327)
T cd02803 142 DFAAAARRAKEA-G--------FDGVEIHGAHGYLLSQF 171 (327)
T ss_pred HHHHHHHHHHHc-C--------CCEEEEcchhhhHHHHh
Confidence 999988887653 4 23333445567765543
No 105
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=37.99 E-value=1.7e+02 Score=30.17 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCcceEeeccCCC-----cHHHHHh------------------------cCCCCChhhHHHHHHHHHHHH
Q 010049 148 NQLINYLLKRGITPYANLYHYDL-----PEALEKK------------------------YNGLLSKRVVKDFADYADFCF 198 (519)
Q Consensus 148 ~~li~~l~~~gi~p~vtL~H~d~-----P~~l~~~------------------------~ggw~~~~~~~~F~~ya~~~~ 198 (519)
.+||+.|+++|++.++.+.-+-. |...+.. +-.|+||+.++.|.+..+.+.
T Consensus 67 ~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 67 KKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred HHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 68999999999997776543321 2221110 013789999999988888776
Q ss_pred HHhCCCcceEEeecccchh
Q 010049 199 KTFGDRVKNWMTFNEPRVV 217 (519)
Q Consensus 199 ~~fgd~V~~W~t~NEp~~~ 217 (519)
...|- --+|+=+|||..+
T Consensus 147 ~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 147 NSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hcCCC-ceEEeeCCCCccH
Confidence 55543 2377888998643
No 106
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.39 E-value=71 Score=33.55 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCeeeeec-ccc-cccccCCCC-CChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCCh
Q 010049 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGK-VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi-~Ws-ri~P~~~g~-~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
++.++.|+++|++.+-+++ +-+ ++...- |+ .+ .+-+.+.|+.+++.|+.++-.-.-+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPg------------ 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDLMYGLPL------------ 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEeccCCCCC------------
Confidence 7889999999999776666 343 333332 33 22 35578899999999998654433455663
Q ss_pred hhHHHHHHHHHHHHH
Q 010049 185 RVVKDFADYADFCFK 199 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~ 199 (519)
++.+.+.+-.+.+.+
T Consensus 164 qt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 164 QTLNSLKEELKLAKE 178 (360)
T ss_pred CCHHHHHHHHHHHHc
Confidence 234555555555543
No 107
>PRK14705 glycogen branching enzyme; Provisional
Probab=36.91 E-value=1.5e+02 Score=36.61 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=57.0
Q ss_pred HHH-HHHHHhcCCCeeeeec--------ccc-------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec--cCC
Q 010049 108 KED-VDIMANLNFDAYRFSI--------SWS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--HYD 169 (519)
Q Consensus 108 ~eD-i~lmk~lG~~~~Rfsi--------~Ws-------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~--H~d 169 (519)
.+. |.-+|+||++++=+.= +|- .+.|.- |. .+=++.||++|.++||.+|+.+- |+.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry-Gt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF-GH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 344 6889999999986542 341 111111 33 23489999999999999998743 552
Q ss_pred CcHHHHHhc----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 010049 170 LPEALEKKY----------------NG-------LLSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 170 ~P~~l~~~~----------------gg-------w~~~~~~~~F~~ya~~~~~~fg 202 (519)
.=.|....+ .. +.++++++.+.+=|..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111211111 11 3467888989999999999996
No 108
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=35.63 E-value=58 Score=37.97 Aligned_cols=94 Identities=11% Similarity=0.163 Sum_probs=59.0
Q ss_pred hhhch-HHHHHHHHhcCCCeeeeecccc---------------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec
Q 010049 103 QYHRY-KEDVDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (519)
Q Consensus 103 ~yhry-~eDi~lmk~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~ 166 (519)
.|.-. ++-+..+|+||++++-+.=-.. .+.|.- |. .+=+++||++|.++||++++.+-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45443 3348999999999987663222 122221 32 24489999999999999999755
Q ss_pred c--CCC-------------cHHHHHhcCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 010049 167 H--YDL-------------PEALEKKYNG----L-------LSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 167 H--~d~-------------P~~l~~~~gg----w-------~~~~~~~~F~~ya~~~~~~fg 202 (519)
+ ..- +.++...-.| | .++++++.+.+=++.-+++|+
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 211 2232210011 2 346788888888888888884
No 109
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.59 E-value=57 Score=37.63 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=42.0
Q ss_pred hHHHHHHHHhcCCCeeeeeccccccc-----------cc-C-CC-------CCCh--hHHHHHHHHHHHHHHcCCcceEe
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIF-----------PY-G-TG-------KVNW--KGVAYYNQLINYLLKRGITPYAN 164 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~-----------P~-~-~g-------~~n~--~gl~~Y~~li~~l~~~gi~p~vt 164 (519)
..+=++-+++||+++.=++=-...+. |. + .| .+|+ -..+=++.||+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998875443321 10 0 01 1222 13456899999999999999996
Q ss_pred --eccCC
Q 010049 165 --LYHYD 169 (519)
Q Consensus 165 --L~H~d 169 (519)
+.|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 45644
No 110
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.22 E-value=2.4e+02 Score=29.73 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=61.8
Q ss_pred CcCCchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHh
Q 010049 98 DVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (519)
Q Consensus 98 d~a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~ 177 (519)
-+|.=||+ |+= .....+.|+..+|.. | |.+-.+ +....+++.++++||..=+..+|-.|.+-+.++
T Consensus 77 LVaDiHf~-~rl-a~~~~~~g~~k~RIN-------P---GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~k 142 (361)
T COG0821 77 LVADIHFD-YRL-ALEAAECGVDKVRIN-------P---GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEK 142 (361)
T ss_pred EEEEeecc-HHH-HHHhhhcCcceEEEC-------C---cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHH
Confidence 34444666 332 233456778888763 3 444333 368999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHH
Q 010049 178 YNGLLSKRVVKDFADYADFC 197 (519)
Q Consensus 178 ~ggw~~~~~~~~F~~ya~~~ 197 (519)
|++-..+..++--..+|+.+
T Consensus 143 y~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 143 YGGPTPEALVESALEHAELL 162 (361)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 98776666666656666654
No 111
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=34.93 E-value=32 Score=26.97 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=32.9
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCC
Q 010049 129 SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYD 169 (519)
Q Consensus 129 sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d 169 (519)
|++-|+. +.=-+++++..-+++..|.++|| +.+.|++-+
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 6788887 66678899999999999999999 788777644
No 112
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.91 E-value=1e+02 Score=31.01 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=53.4
Q ss_pred HHHHHHHHhcC----CCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCC
Q 010049 108 KEDVDIMANLN----FDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (519)
Q Consensus 108 ~eDi~lmk~lG----~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~ 182 (519)
.+|++.+.+.| ++.+|+.++-|.+.-... +.=-.+.++-..+.++.+++.|++..+++.+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~- 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR- 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC-
Confidence 79999999999 999999886655432211 3223346777889999999999986654322 222
Q ss_pred ChhhHHHHHHHHHHHHHHhC
Q 010049 183 SKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fg 202 (519)
-..+.+.+.++.+.+ +|
T Consensus 140 --~~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 --TDLDFLIEVVEAAIE-AG 156 (268)
T ss_pred --CCHHHHHHHHHHHHH-cC
Confidence 234666667776643 44
No 113
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=34.81 E-value=89 Score=37.86 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=49.3
Q ss_pred CCCcEEEecCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEecccccccccc---C-----CCcccc
Q 010049 418 GNPTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFEWR---L-----GYTSRF 489 (519)
Q Consensus 418 ~~ppI~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfEW~---~-----Gy~~rf 489 (519)
...|++++|.|.+.... .|. + ++-.+++++-=.+.|=|.|.++|-=-.. + +|.--|
T Consensus 504 ~~kP~i~~Ey~hamgn~---~g~---------~----~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~ 567 (1021)
T PRK10340 504 HPKPRILCEYAHAMGNG---PGG---------L----TEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDY 567 (1021)
T ss_pred CCCcEEEEchHhccCCC---CCC---------H----HHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCC
Confidence 34689999998776321 111 2 2333467777889999999999931100 1 233333
Q ss_pred ------------ceEEEcCCCCcccccchHHHHHHHHh
Q 010049 490 ------------GIVYVDFTNLKRYPKMSAYWFKQLLK 515 (519)
Q Consensus 490 ------------GL~~VD~~~~~R~pK~Sa~~y~~ii~ 515 (519)
||+. ..|+||++++.||++.+
T Consensus 568 g~~p~~~~f~~~Glv~-----~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 568 GDYPNNYNFCIDGLIY-----PDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCCCcCcccceeEC-----CCCCCChhHHHHHHhcc
Confidence 4432 35899999999999875
No 114
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=34.46 E-value=93 Score=30.84 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=46.0
Q ss_pred ecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhC
Q 010049 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 125 si~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fg 202 (519)
.++|..+.++|+-.... .......+++.++++|+++++++-.++...... -..++..++.|++=+-..++++|
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 44566666654311110 123467889999999999999997766543221 12467777778776666677765
No 115
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=34.16 E-value=1.3e+02 Score=34.02 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=61.5
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCc----HHHHHh-----
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EALEKK----- 177 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P----~~l~~~----- 177 (519)
.++|++.+.+.|++.+|+..+.+.+ +-....++.++++|+...+++.+-+.| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999876653 225777788888998888887665555 222111
Q ss_pred -----------cCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 178 -----------~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
-.|...|.-+ .+..+.+-++++ ..-...+.|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~v---~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKAA---YELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCHHHH---HHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0566666443 444455556665 3346788887764
No 116
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=34.06 E-value=1e+02 Score=30.20 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 010049 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRV 205 (519)
Q Consensus 147 Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V 205 (519)
.+..++.+++.|+.-+=--.+|.... ...-++-.+....+.+.+..+.| +.+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 58889999999999776656652222 11102235566667777777666 4445444
No 117
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=33.79 E-value=2e+02 Score=29.65 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCcceEeeccC---CCcHHHHHh---c--------------------CCCCChhhHHHHHHHHHHHHHH
Q 010049 147 YNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y--------------------NGLLSKRVVKDFADYADFCFKT 200 (519)
Q Consensus 147 Y~~li~~l~~~gi~p~vtL~H~---d~P~~l~~~---~--------------------ggw~~~~~~~~F~~ya~~~~~~ 200 (519)
-..+|++|+++|++.++.+.-+ +.+.+-+-+ | -.++||+.++.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 3789999999999987765322 112111100 0 1277889988887766555544
Q ss_pred hCCCcceEEeecccchhc
Q 010049 201 FGDRVKNWMTFNEPRVVA 218 (519)
Q Consensus 201 fgd~V~~W~t~NEp~~~~ 218 (519)
.|- --+|+=+|||..+.
T Consensus 148 ~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 148 KGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred CCC-cEEEecCCCCCccC
Confidence 442 34778899997653
No 118
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=33.58 E-value=1.5e+02 Score=31.15 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhH
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~ 187 (519)
..-|++|.+.|.+-.=.|+ +.|++ -+...+..+.++++.+.+.|+++||.. -|+-|.. -||. .+.+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~~l 84 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hHHH
Confidence 3447888888877655544 34444 233467899999999999999999986 5888875 4653 3445
Q ss_pred HHHHHH
Q 010049 188 KDFADY 193 (519)
Q Consensus 188 ~~F~~y 193 (519)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555443
No 119
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=33.32 E-value=1.2e+02 Score=33.00 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=64.8
Q ss_pred hHHHHHHHHhcCCCeeeeec-cccc-ccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCCh
Q 010049 107 YKEDVDIMANLNFDAYRFSI-SWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi-~Wsr-i~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
=+|.++.|+++|+|-+-+++ |-+. +...- |+... .+-..+.|+.+++.|...+..=.=+++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~~--~~~~~~~i~~l~~~g~~~v~~DlI~GlPg------------ 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKDD--REEVLARLEELVARDRAAVVCDLIFGLPG------------ 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCCC--HHHHHHHHHHHHhCCCCcEEEEEEeeCCC------------
Confidence 37889999999999888887 5432 22221 33221 24567789999999954444333456662
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCcccC
Q 010049 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA 228 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~~ 228 (519)
++.+.|.+=.+.+.+-=-+.|..+...-||+......+..|.++
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 23444444455555433467888888888876544444445444
No 120
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=33.13 E-value=1.1e+02 Score=29.32 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=47.5
Q ss_pred hchHHHHHHHHhcCCC--eeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCC--
Q 010049 105 HRYKEDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG-- 180 (519)
Q Consensus 105 hry~eDi~lmk~lG~~--~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~gg-- 180 (519)
.+|.+.++.+++.|+. +|-|-- |.. + +.+-.+.+++.+... +.++|..|.-+..|
T Consensus 46 ~~f~~n~~~A~~~Gl~vGaYHf~~------~~~----~--~~~QA~~F~~~v~~~---------~~~lp~vlD~E~~~~~ 104 (190)
T cd06419 46 DNFLSNFSRAQGTGLSVGVIHTFS------FSS----T--AAAQYRYFIRKVGNN---------TGNLPIAIYVSYYGDY 104 (190)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEee------cCC----C--HHHHHHHHHHhCCCC---------CCCCCeEEEEecCCCC
Confidence 5799999999999987 454311 111 1 112245555554433 22344333222112
Q ss_pred -CCChhhHHHHHHHHHHHHHHhCCCcceEE
Q 010049 181 -LLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (519)
Q Consensus 181 -w~~~~~~~~F~~ya~~~~~~fgd~V~~W~ 209 (519)
....+..+...+|++.|-++.|.++-..+
T Consensus 105 ~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 105 NPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 23356678888889988888887655444
No 121
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=33.11 E-value=2e+02 Score=30.01 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcceEeeccCCCc--------HHHHH---h----------c-----------CCCCChhhHHHHHHHHH
Q 010049 148 NQLINYLLKRGITPYANLYHYDLP--------EALEK---K----------Y-----------NGLLSKRVVKDFADYAD 195 (519)
Q Consensus 148 ~~li~~l~~~gi~p~vtL~H~d~P--------~~l~~---~----------~-----------ggw~~~~~~~~F~~ya~ 195 (519)
++||++|+++|++.++.+.-+-.+ ..-+. . + -.++||+.+++|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999988876544332 11110 0 0 13788999999988777
Q ss_pred HHHHHhCCCcceEEeecccchh
Q 010049 196 FCFKTFGDRVKNWMTFNEPRVV 217 (519)
Q Consensus 196 ~~~~~fgd~V~~W~t~NEp~~~ 217 (519)
.++...|- --+|+=+|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 77666553 2467778998643
No 122
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.61 E-value=2.4e+02 Score=27.37 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=67.7
Q ss_pred HHHHHH----HHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEeeccCCC--cHHHHHhc--
Q 010049 108 KEDVDI----MANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL--PEALEKKY-- 178 (519)
Q Consensus 108 ~eDi~l----mk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~--P~~l~~~~-- 178 (519)
++|++. +++.|++.+|+.++=|....... +.--++.++-..++++.+++.|++..+++.+.+- |..+.+-.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEA 145 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHH
Confidence 455554 55799999999996665444321 3334567788899999999999999998877542 33332211
Q ss_pred --------------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 179 --------------NGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 179 --------------ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
-|...| +...++.+.+-+++++..-.+...|-..+
T Consensus 146 ~~~~g~~~i~l~Dt~G~~~P---~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 146 LAEAGADIIYLADTVGIMTP---EDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp HHHHT-SEEEEEETTS-S-H---HHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred HHHcCCeEEEeeCccCCcCH---HHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 344444 44556667777777765566666666543
No 123
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=32.55 E-value=82 Score=36.41 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=39.2
Q ss_pred HHHHHhcCCCeeee----ecccccccccC-C----C-------------CCChh---HHHHHHHHHHHHHHcCCcceEee
Q 010049 111 VDIMANLNFDAYRF----SISWSRIFPYG-T----G-------------KVNWK---GVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 111 i~lmk~lG~~~~Rf----si~Wsri~P~~-~----g-------------~~n~~---gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
|+-+|+|||+++.+ ++.+.+..++. . | ..|.+ .+.=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999985 44444444321 1 1 11332 46679999999999999999863
No 124
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=32.54 E-value=1.4e+02 Score=30.48 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=48.4
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
-++|++...+.|++..-+.++=|...-... +.=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 389999999999999988886665544422 44456789999999999999999999888
No 125
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=32.45 E-value=1.5e+02 Score=31.69 Aligned_cols=51 Identities=8% Similarity=0.155 Sum_probs=39.8
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
..|++||++++++|+++|=+.|- .. ...+. +....+++.+.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999986 11 22333 456888899999998888765
No 126
>PLN02389 biotin synthase
Probab=32.13 E-value=1.1e+02 Score=32.65 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=42.0
Q ss_pred chHHHHHHHHhcCCCeeeeeccccc-ccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsr-i~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
.-+|.++.||++|++.|-.+++=++ ++|.-...-+ .+...+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s---~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRS---YDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCC---HHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885233 5554211123 3667899999999999876553
No 127
>PRK10785 maltodextrin glucosidase; Provisional
Probab=31.47 E-value=69 Score=36.30 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=38.2
Q ss_pred hHHHHHHHHhcCCCeeeeecc-------------cccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 107 YKEDVDIMANLNFDAYRFSIS-------------WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~-------------Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
..+-+.-+|+|||++.=++=- +-+|.|.= | ..+=+++|++++.++||++|+.+
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 466788999999998877642 22233321 2 23458999999999999999864
No 128
>PTZ00445 p36-lilke protein; Provisional
Probab=31.36 E-value=80 Score=31.13 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhc-CCCCChh---------hHHHHHHHHHHHHH
Q 010049 145 AYYNQLINYLLKRGITPYANLYHYDLPEALEKKY-NGLLSKR---------VVKDFADYADFCFK 199 (519)
Q Consensus 145 ~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~-ggw~~~~---------~~~~F~~ya~~~~~ 199 (519)
+--+.+++.|++.||+.+++ |+=.-|...+ |||.++. ....|......+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~----D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIAS----DFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEe----cchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 34578889999999998875 2322333322 8999997 45556666555443
No 129
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.33 E-value=2.1e+02 Score=28.88 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=48.8
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhh
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~ 186 (519)
-++|++...+.|++.+|+++.-+. ++--...++.++++|+++.+++.--+- ++-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~~------------~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTGS------------PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecCC------------CCCC
Confidence 488999999999999999885554 355788999999999998876632111 1223
Q ss_pred HHHHHHHHHHHHH
Q 010049 187 VKDFADYADFCFK 199 (519)
Q Consensus 187 ~~~F~~ya~~~~~ 199 (519)
.+.+.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~ 160 (275)
T cd07937 148 LEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHHHHH
Confidence 4666667777654
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=30.91 E-value=90 Score=35.91 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHhcCCCeeeeecc-----------------c-------ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 111 VDIMANLNFDAYRFSIS-----------------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 111 i~lmk~lG~~~~Rfsi~-----------------W-------sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
|+-+|+||++++=+.=- | -.+.|.- |.-....++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999998865321 1 2223321 22111235669999999999999999864
No 131
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=30.90 E-value=1.2e+02 Score=29.91 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhC
Q 010049 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 144 l~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fg 202 (519)
.+...+.|..|+++|+++++++--++....+ ....+++.++.|++-...++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999999766554322 112455566777776666677776
No 132
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.58 E-value=1.7e+02 Score=29.61 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=52.4
Q ss_pred CCchhhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHH
Q 010049 100 SVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 175 (519)
Q Consensus 100 a~d~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~ 175 (519)
+.+..+...+=.+.+|++|+..+|-+..=+|--|.+.-.+ +.+.+..+-+.+.+.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 3456777788889999999999999986577776542112 235567777778999999888877655555443
No 133
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=30.27 E-value=2.2e+02 Score=30.22 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHH
Q 010049 114 MANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADY 193 (519)
Q Consensus 114 mk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~y 193 (519)
..+.|++..|+ -| |.+-. --+..+.+++.++++|+..=+..+|-.++.-+.++||+-..+..++--.++
T Consensus 97 a~~~G~~~iRI-------NP---GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 97 AAEAGADALRI-------NP---GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHHhCCCEEEE-------CC---CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 34778999854 44 43421 025789999999999999999999999999999998654445566666666
Q ss_pred HHHH
Q 010049 194 ADFC 197 (519)
Q Consensus 194 a~~~ 197 (519)
++.|
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 6654
No 134
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.89 E-value=1.8e+02 Score=30.58 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhH
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVV 187 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~ 187 (519)
.+|++...+.|++.+|+....++. +--.+.|+.++++|++..+++..-. ....
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCCH
Confidence 589999999999999998866553 1248899999999999999886531 1234
Q ss_pred HHHHHHHHHHHHHhC
Q 010049 188 KDFADYADFCFKTFG 202 (519)
Q Consensus 188 ~~F~~ya~~~~~~fg 202 (519)
+.+.+.++.+. .+|
T Consensus 144 e~l~~~a~~~~-~~G 157 (337)
T PRK08195 144 EKLAEQAKLME-SYG 157 (337)
T ss_pred HHHHHHHHHHH-hCC
Confidence 66677777654 455
No 135
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=29.85 E-value=54 Score=40.47 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=39.1
Q ss_pred hhhchH--HHHHHHHhcCCCeeeeecccc------------------------cccccCCCCCChhHHHHHHHHHHHHHH
Q 010049 103 QYHRYK--EDVDIMANLNFDAYRFSISWS------------------------RIFPYGTGKVNWKGVAYYNQLINYLLK 156 (519)
Q Consensus 103 ~yhry~--eDi~lmk~lG~~~~Rfsi~Ws------------------------ri~P~~~g~~n~~gl~~Y~~li~~l~~ 156 (519)
-|.... +.|.-+|+||++++=+.=-.. .+.|.- |. ...+=+++||++|.+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~y-g~---~~~~efk~lV~~~H~ 258 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRL-AP---GGEEEFAQAIKEAQS 258 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhh-cc---CcHHHHHHHHHHHHH
Confidence 344444 668899999999986653221 111111 21 134568999999999
Q ss_pred cCCcceEe
Q 010049 157 RGITPYAN 164 (519)
Q Consensus 157 ~gi~p~vt 164 (519)
+||++|+.
T Consensus 259 ~GI~VILD 266 (1221)
T PRK14510 259 AGIAVILD 266 (1221)
T ss_pred CCCEEEEE
Confidence 99999986
No 136
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=29.85 E-value=3.7e+02 Score=25.18 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHhCCC
Q 010049 185 RVVKDFADYADFCFKTFGDR 204 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~ 204 (519)
...+....|++.+-++.|-+
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~ 119 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLK 119 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 34455556666655555543
No 137
>PRK07094 biotin synthase; Provisional
Probab=29.77 E-value=82 Score=32.37 Aligned_cols=55 Identities=11% Similarity=0.031 Sum_probs=39.3
Q ss_pred chHHHHHHHHhcCCCeeeeecc-c-ccccccCCCCCChhHHHHHHHHHHHHHHcCCcceE
Q 010049 106 RYKEDVDIMANLNFDAYRFSIS-W-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA 163 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~-W-sri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~v 163 (519)
+-+|+++.|+++|++.+-++++ - .++...-....+ .+-+.+.|+.+++.||.+..
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGS 183 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecc
Confidence 4589999999999999999883 3 244443211122 35688899999999997543
No 138
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=29.39 E-value=2.2e+02 Score=29.09 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCC----CcHHHHHhcCCCCChhh
Q 010049 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYD----LPEALEKKYNGLLSKRV 186 (519)
Q Consensus 111 i~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d----~P~~l~~~~ggw~~~~~ 186 (519)
.+.+++-.-+.=-++..|-.|-|+|. +.. ....++++.++++|+++++++..++ -+.-+..- -.+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~--~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~---l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGT--LTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAV---LSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCC--CCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHH---hcCHHH
Confidence 56777777777778889999988763 322 1246899999999999999998765 11112211 245677
Q ss_pred HHHHHHHHHHHHHHhC
Q 010049 187 VKDFADYADFCFKTFG 202 (519)
Q Consensus 187 ~~~F~~ya~~~~~~fg 202 (519)
++.|++=+-..++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7778777777777775
No 139
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=29.39 E-value=81 Score=37.17 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=43.7
Q ss_pred hhchHHHHHHHHhcCCCeeeeecccc---------------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe--ec
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--LY 166 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt--L~ 166 (519)
+....+-+.-+++||++++=+|=-+. +|.|.- | +.+=+++++++|+++||.+|+. +.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34568889999999999986665432 333332 2 3455899999999999999996 45
Q ss_pred cCC
Q 010049 167 HYD 169 (519)
Q Consensus 167 H~d 169 (519)
|..
T Consensus 89 H~a 91 (825)
T TIGR02401 89 HMA 91 (825)
T ss_pred ccc
Confidence 654
No 140
>PLN02923 xylose isomerase
Probab=29.33 E-value=5.7e+02 Score=27.94 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=51.2
Q ss_pred chHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHH----HHHHHcCCcceE-eeccCCCcHHHHHhcCC
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLI----NYLLKRGITPYA-NLYHYDLPEALEKKYNG 180 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li----~~l~~~gi~p~v-tL~H~d~P~~l~~~~gg 180 (519)
|.+-=++.|.+||+..|-|- =..|.|.+ .... +-.+-.+.++ +.+.+.||+..+ |..-|..|.... |+
T Consensus 124 k~daaFEf~~kLG~~y~cFH--D~Dl~Peg-~sl~-E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~---GA 196 (478)
T PLN02923 124 RMRANFEFLKKLGVDRWCFH--DRDIAPDG-KTLE-ESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH---GA 196 (478)
T ss_pred HHHHHHHHHHHhCCCeEccC--ccccCCCC-CCHH-HHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC---Cc
Confidence 33344568999999988764 45677886 3222 2222233333 345577999765 566799998764 88
Q ss_pred CCChhhHHHHHHHHHHH
Q 010049 181 LLSKRVVKDFADYADFC 197 (519)
Q Consensus 181 w~~~~~~~~F~~ya~~~ 197 (519)
.+|++ .+-|+.=|..|
T Consensus 197 aTspd-~dV~ayAaaqv 212 (478)
T PLN02923 197 ATSSE-VGVYAYAAAQV 212 (478)
T ss_pred CCCCC-HHHHHHHHHHH
Confidence 88874 44444444444
No 141
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=28.93 E-value=7.7e+02 Score=26.78 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCCeeeeec--ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcce-EeeccCCCcHH--HHHhcCCCC
Q 010049 108 KEDVDIMANLNFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEA--LEKKYNGLL 182 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi--~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~-vtL~H~d~P~~--l~~~~ggw~ 182 (519)
.+|+..++++.--.-|+++ .|.. +|.+.++ +.++++||..- +....|..|+. -.-++|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 7888888888877777776 8822 4655544 88999999988 77777877732 112347777
Q ss_pred Ch--hhHHHHHHHHHHH---HHHhCC-CcceEE
Q 010049 183 SK--RVVKDFADYADFC---FKTFGD-RVKNWM 209 (519)
Q Consensus 183 ~~--~~~~~F~~ya~~~---~~~fgd-~V~~W~ 209 (519)
|| ++++.-.+.+..| .++.|. .|..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 75 4566666665555 556665 345554
No 142
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.63 E-value=2.1e+02 Score=30.31 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCeeeeecccccccccC---CCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCCh
Q 010049 108 KEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi~Wsri~P~~---~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
++.++.|+++|+|.+.+++ --+-++- -|+.. ..+-..+.++.+++.|+..+-.=.=+++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg------------ 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLIYGLPT------------ 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCC------------
Confidence 7889999999999555555 2222221 03221 123467788999999997543223445552
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEeecccchhc
Q 010049 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVA 218 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~ 218 (519)
++.+.|.+=.+.+.+.=-+.|......=||....
T Consensus 167 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 3566677777776654346788888888887543
No 143
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=28.60 E-value=1.9e+02 Score=30.29 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=63.8
Q ss_pred HHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHH
Q 010049 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKD 189 (519)
Q Consensus 110 Di~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~ 189 (519)
+++.+|++|.++..|=+=|. |++.-.+|..=.++-+++.++|++++|-=++-+..+|.+. .+. ++ .++...
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~-~~---~~yak~ 181 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN-GS---VEFAKV 181 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC-Cc---HHHHHh
Confidence 46899999999999988775 4433458888889999999999999999999888887654 121 22 222222
Q ss_pred HHHHHHHHHHHhCC---CcceEEe
Q 010049 190 FADYADFCFKTFGD---RVKNWMT 210 (519)
Q Consensus 190 F~~ya~~~~~~fgd---~V~~W~t 210 (519)
--+.+-..++.|++ .|+.|=+
T Consensus 182 kP~~V~~a~kefs~~~~gvDVlKv 205 (325)
T TIGR01232 182 KPRKVNEAMKLFSEPRFNVDVLKV 205 (325)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEE
Confidence 23334445677766 4666544
No 144
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=27.66 E-value=2e+02 Score=30.71 Aligned_cols=87 Identities=18% Similarity=0.304 Sum_probs=57.6
Q ss_pred cCCchhhchHHHHHHHHhc-CCCeeeeec--ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcce-EeeccCCCcHHH
Q 010049 99 VSVDQYHRYKEDVDIMANL-NFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEAL 174 (519)
Q Consensus 99 ~a~d~yhry~eDi~lmk~l-G~~~~Rfsi--~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~-vtL~H~d~P~~l 174 (519)
.+.+-.++ .+|++.++.+ ++. .++++ .| + .. ..+.++.+.|+++||+.. ++...|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d-~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D-RV------EDYEELARYAEELGLKIGAINPNLFQDDDY- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c-cc------cCHHHHHHHHHHcCCceeeeeCCccCCccc-
Confidence 33333344 7788888887 555 66666 44 2 11 236788888999999987 78777766654
Q ss_pred HHhcCCCCCh--hhHHHHHHHHHHHH---HHhCC
Q 010049 175 EKKYNGLLSK--RVVKDFADYADFCF---KTFGD 203 (519)
Q Consensus 175 ~~~~ggw~~~--~~~~~F~~ya~~~~---~~fgd 203 (519)
++|...|+ ++++.-.++.+.|. +++|.
T Consensus 99 --~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 --KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34777775 56666666666664 66776
No 145
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.76 E-value=1.5e+02 Score=29.85 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=32.6
Q ss_pred hhchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHH
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYL 154 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l 154 (519)
....++||++++++|++.+=|++- +++|.+|.+. ..++|+..
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHH---HHHHHHHh
Confidence 567899999999999999999874 2237899854 46666665
No 146
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=26.75 E-value=31 Score=34.70 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCcccC
Q 010049 154 LLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA 228 (519)
Q Consensus 154 l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~~ 228 (519)
+.++.+.|+++||||+.=.. -+-+....+.++.+.+=|+.--.++--+-..|---....+-+..||..-.++
T Consensus 77 ~~a~~~~pl~SlHH~~~~~P---ifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 77 LEAHPLAPLVSLHHWDSVDP---IFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eecCCCCceeeeeehhhccc---cCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 34556899999999996222 2345555677777777555443333222112222223344566899887773
No 147
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.61 E-value=2.5e+02 Score=29.00 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 181 LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 181 w~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
++||+.++.|.+..+..+...|- --+|+=+|||.+
T Consensus 137 ftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 137 FTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 57899999998877666555542 236777899863
No 148
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.06 E-value=1.3e+02 Score=29.47 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=41.8
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCC--CCCChhHHHHHHHHHHHHHHcCCcceEe-eccCCCc
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYAN-LYHYDLP 171 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~--g~~n~~gl~~Y~~li~~l~~~gi~p~vt-L~H~d~P 171 (519)
.-..+++=|+++++||.+..++...+ . |... .+.....++..+++.+.+.+.||+..+= +++++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGK--R-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 34667788999999999988864322 1 2110 1122334566788888888999986663 3445544
No 149
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=1.5e+02 Score=32.81 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=72.1
Q ss_pred hhchHHHHHHHHhcCCCeeeee----cccccccccC--------------------------C--CCCChh----HHHHH
Q 010049 104 YHRYKEDVDIMANLNFDAYRFS----ISWSRIFPYG--------------------------T--GKVNWK----GVAYY 147 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfs----i~Wsri~P~~--------------------------~--g~~n~~----gl~~Y 147 (519)
|.+|+..|+-|+=.|+|..=.- +-|-+|+-.- . |...++ -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 5788888888888888854332 1344443321 0 322221 12234
Q ss_pred HHHHHHHHHcCCcceEeeccCCCcHHHHHhc--------CCCCC---------------hhhHHHHHHHHHHHHHHhCC-
Q 010049 148 NQLINYLLKRGITPYANLYHYDLPEALEKKY--------NGLLS---------------KRVVKDFADYADFCFKTFGD- 203 (519)
Q Consensus 148 ~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~--------ggw~~---------------~~~~~~F~~ya~~~~~~fgd- 203 (519)
+++|+.+++-||+|++..+---.|..|+.-+ +-|.+ |-+.+-=..|-+...++||.
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999988888999998654 23322 33555556677788899995
Q ss_pred -CcceEEeeccc
Q 010049 204 -RVKNWMTFNEP 214 (519)
Q Consensus 204 -~V~~W~t~NEp 214 (519)
.+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 44445588884
No 150
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=25.24 E-value=3.3e+02 Score=24.83 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=38.1
Q ss_pred hchHHHHHHHHhcCCCeeeeecc-ccccccc-CCCCCChhHHHHHHHHHHHHHHcC-CcceE
Q 010049 105 HRYKEDVDIMANLNFDAYRFSIS-WSRIFPY-GTGKVNWKGVAYYNQLINYLLKRG-ITPYA 163 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~-Wsri~P~-~~g~~n~~gl~~Y~~li~~l~~~g-i~p~v 163 (519)
..-++.++.|+++|++.+.+|+. ++.=.-+ -....+ .+.+.+.|+.+++.| +.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEE
Confidence 33478899999999999999994 6432111 101122 267889999999999 55444
No 151
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=24.74 E-value=2.6e+02 Score=30.05 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=60.4
Q ss_pred chHHHHHHHHhcCCCeeeeeccccc-----------ccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeec--------
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSR-----------IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-------- 166 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsr-----------i~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~-------- 166 (519)
..++-++.++++|++.+=+.--|.. .+|+. .++ +.| ...+++.+++.|+++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4567788999999998888879964 34443 233 124 68999999999999755320
Q ss_pred --cCCCcHHHHHhc-----C-------CCCChhhHHHHHHHHHHHHHHhC
Q 010049 167 --HYDLPEALEKKY-----N-------GLLSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 167 --H~d~P~~l~~~~-----g-------gw~~~~~~~~F~~ya~~~~~~fg 202 (519)
.-..|.|+...- . ...+|++.++..+-...+++++|
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 124688864310 1 14568888888888888888886
No 152
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=24.73 E-value=2.2e+02 Score=33.47 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=60.1
Q ss_pred cCCCeeeeecc-cccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeecc---CCCcHHHH--Hh-c-----------
Q 010049 117 LNFDAYRFSIS-WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH---YDLPEALE--KK-Y----------- 178 (519)
Q Consensus 117 lG~~~~Rfsi~-Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H---~d~P~~l~--~~-~----------- 178 (519)
+=++++++.+. |.+ ..+.=++|..-.--=+.||+.|++.||+.++-+.. -|.|+.=+ .+ |
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 34678999995 876 11111122111111259999999999998887653 33333211 11 0
Q ss_pred ----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccchhccc
Q 010049 179 ----------NGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAAL 220 (519)
Q Consensus 179 ----------ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~ 220 (519)
-.+.||+.+++|.+....-+..+| -.-+|.=+|||.+....
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 127899999999873322233333 24578889999977544
No 153
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.41 E-value=1.8e+02 Score=29.70 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=48.5
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChh
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~ 185 (519)
.++=+++++++||..+.+..- +.=+++.++||+++++++.+++| +|.+|--..|.=++..|--..+++
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 366689999999999988752 33578999999999999999998 688887778877776553333333
No 154
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.28 E-value=2e+02 Score=25.94 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010049 145 AYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (519)
Q Consensus 145 ~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~~fgd~ 204 (519)
+=+.-+|+.|++.|++|++.+.= -.+.|.. |.| .+++.++.|.+=.+..+++.|-.
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 33678999999999999998731 1134543 466 36777888888888888888853
No 155
>PTZ00445 p36-lilke protein; Provisional
Probab=24.18 E-value=1.2e+02 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHhcCCCeeeeecccccccc-cCCCCCChh---------HHHHHHHHHHHHHHcCCcceEeecc
Q 010049 111 VDIMANLNFDAYRFSISWSRIFP-YGTGKVNWK---------GVAYYNQLINYLLKRGITPYANLYH 167 (519)
Q Consensus 111 i~lmk~lG~~~~Rfsi~Wsri~P-~~~g~~n~~---------gl~~Y~~li~~l~~~gi~p~vtL~H 167 (519)
++++++.|++++=+.+.=+-|-- +| |..++. +-.-...++.+|+++||..+|.++-
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg-G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG-GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc-cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 67899999999988876554441 22 333332 3455788999999999998887653
No 156
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=24.17 E-value=1.5e+02 Score=37.92 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=47.7
Q ss_pred hhchHHHHHHHHhcCCCeeeeecccc---------------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee--c
Q 010049 104 YHRYKEDVDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (519)
Q Consensus 104 yhry~eDi~lmk~lG~~~~Rfsi~Ws---------------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL--~ 166 (519)
+....+-+.-+++||+++.=+|=-+. +|.|.- | +.+=+++++++|+++||.+|+.+ .
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 45577888999999999986664443 333432 2 34558999999999999999864 5
Q ss_pred cCC-----CcHHHH
Q 010049 167 HYD-----LPEALE 175 (519)
Q Consensus 167 H~d-----~P~~l~ 175 (519)
|.. .|.|.+
T Consensus 831 H~~~~~~~n~w~~d 844 (1693)
T PRK14507 831 HMGVGGADNPWWLD 844 (1693)
T ss_pred ccCCCccCCHHHHH
Confidence 764 565554
No 157
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.04 E-value=3.9e+02 Score=27.03 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=61.6
Q ss_pred hchHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCCh
Q 010049 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 105 hry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
.+.++-++.+|+.|+. ++.+|+.+---|.. +..+. +++.++++.+.+.|..- ++| .|- .|...|
T Consensus 114 ~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~-~~~~~---~~~~~~~~~~~~~Ga~~-i~l---------~DT-~G~~~P 177 (274)
T cd07938 114 ERFEPVAELAKAAGLR-VRGYVSTAFGCPYE-GEVPP---ERVAEVAERLLDLGCDE-ISL---------GDT-IGVATP 177 (274)
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEeEecCCCC-CCCCH---HHHHHHHHHHHHcCCCE-EEE---------CCC-CCccCH
Confidence 4456668899999984 78888777666776 77775 78999999999999863 333 233 566665
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEeecccc
Q 010049 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~ 215 (519)
..+.++.+.+.+++++..-.+.+.|-..
T Consensus 178 ---~~v~~lv~~l~~~~~~~~i~~H~Hnd~G 205 (274)
T cd07938 178 ---AQVRRLLEAVLERFPDEKLALHFHDTRG 205 (274)
T ss_pred ---HHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 3455556666677765333445555443
No 158
>PRK12677 xylose isomerase; Provisional
Probab=24.02 E-value=4.8e+02 Score=27.85 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=45.5
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHHhcCCCCCh
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~-vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
.+|-++.++++|++.+=+.. ..+.|-. - -..+--+..+++-+.|.++||++. +|...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~-~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-A-TDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-C-ChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 58899999999999886632 2344442 1 111111246778888889999965 55555655644 23788874
No 159
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.58 E-value=2.8e+02 Score=29.17 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=58.8
Q ss_pred hHHHHHHHHhcCCCeeeeec-ccc-cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCCh
Q 010049 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi-~Ws-ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~ 184 (519)
=+|.+++|+++|++.+-+++ +-+ ++.-.- |+.. ..+-..+.++.+++.|+..+..-.=+++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--s~~~~~~a~~~l~~~g~~~v~~dli~GlPg------------ 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTH--TPGRAVAAAREARAAGFEHVNLDLIYGTPG------------ 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEEeccCCC------------
Confidence 37889999999999666666 333 222221 2221 224577889999999998343333345552
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCcc
Q 010049 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGF 226 (519)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~ 226 (519)
++.+.|.+=.+.+.+.=-+.|......=||+.....-+..|.
T Consensus 172 qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~ 213 (375)
T PRK05628 172 ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGE 213 (375)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCC
Confidence 234555555555443223555555555566654433333343
No 160
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.30 E-value=99 Score=27.09 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCeeeeec-ccccc-cccCCCCCChhHHHHHHHHHHHHHHcCCcc
Q 010049 108 KEDVDIMANLNFDAYRFSI-SWSRI-FPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi-~Wsri-~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p 161 (519)
++.++.|+++|++.+++|+ +-+.- .....+ .....+-..+.++.|++.|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999999 44332 111101 1123466789999999999996
No 161
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.48 E-value=1.3e+02 Score=32.86 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCeeeeec-cccc-ccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 010049 108 KEDVDIMANLNFDAYRFSI-SWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (519)
Q Consensus 108 ~eDi~lmk~lG~~~~Rfsi-~Wsr-i~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P 171 (519)
+|.+++|+++|++.+-+++ +-+. +.-.-.-..+ ++.+.+.++.|+++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5678999999999888888 4432 2222101123 35678999999999999777654 2445
No 162
>PRK10426 alpha-glucosidase; Provisional
Probab=22.38 E-value=5.4e+02 Score=29.53 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred chHHHHHHHHhcCCCeeeeec-ccccccccCCC-------CCChhHHHHHHHHHHHHHHcCCcceEeeccC---CCcHHH
Q 010049 106 RYKEDVDIMANLNFDAYRFSI-SWSRIFPYGTG-------KVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEAL 174 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi-~Wsri~P~~~g-------~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~---d~P~~l 174 (519)
...+-++.+++.|+..==+-| .|+-......| .+|.+-.-=-++||++|++.|++.++-+.-+ +.|..-
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 355667888999876544433 57643222111 2233221224789999999999977765532 334332
Q ss_pred HHh---c------C---------------CCCChhhHHHHHHHHHHHHHHhCCCcceE-Eeeccc
Q 010049 175 EKK---Y------N---------------GLLSKRVVKDFADYADFCFKTFGDRVKNW-MTFNEP 214 (519)
Q Consensus 175 ~~~---~------g---------------gw~~~~~~~~F~~ya~~~~~~fgd~V~~W-~t~NEp 214 (519)
+-+ | | .++||+.+++|.+..+.-+...| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 17899999999887765555555 7666 667884
No 163
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.26 E-value=1.8e+02 Score=29.63 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCC-CcEEEecCCCCCCCCCCCCCCcCchhhHHHHHHHHHHHHHHHHcCCceEEEEecccccccc
Q 010049 404 WGMYKALMYIKGHYGN-PTVILSENGMDDPGNVTLPKGLHDTTRINYYKGYLTQLKKAVDDGANVVGYFAWSLLDNFE 480 (519)
Q Consensus 404 ~Gl~~~L~~i~~~Y~~-ppI~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hL~~v~~Ai~~Gv~V~GY~~WSl~DnfE 480 (519)
.++...++++++++++ .+|.| |.. -+++++.|++.|+|+.. +||+.
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~V-Ev~------------------------tleea~~A~~~GaDiI~------LDn~~ 212 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEI-ECE------------------------SLEEAKNAMNAGADIVM------CDNMS 212 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEE-EeC------------------------CHHHHHHHHHcCCCEEE------ECCCC
Confidence 5789999999999974 44444 541 16799999999999988 88874
No 164
>PRK06256 biotin synthase; Validated
Probab=22.20 E-value=1.3e+02 Score=31.16 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=38.8
Q ss_pred chHHHHHHHHhcCCCeeeeec-ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEe
Q 010049 106 RYKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi-~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vt 164 (519)
.-+|.++.||++|++.+-+++ +=.++++.-....+ .+-..+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccC
Confidence 457899999999999998877 42234443211122 355778999999999975443
No 165
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.11 E-value=98 Score=28.69 Aligned_cols=61 Identities=10% Similarity=-0.032 Sum_probs=40.8
Q ss_pred hhhchHHHHHHHHhcCCCeeeeecccccccccCC-CCCChhHHHHHHHHHHHHHHcCCcceE
Q 010049 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYA 163 (519)
Q Consensus 103 ~yhry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~-g~~n~~gl~~Y~~li~~l~~~gi~p~v 163 (519)
.....++-+++++.+|++.+++...+-...+... ..--...++.++.+.+.+.++|+++.+
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 3567889999999999999999875411111110 011122456788888888899987554
No 166
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.94 E-value=6.6e+02 Score=24.81 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=35.1
Q ss_pred chHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcce
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY 162 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~ 162 (519)
-++|-++.++++|++.+=+++.=....+.. ..++. +..+.+-+.+.++||++.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCcee
Confidence 378999999999999988764211111111 12233 346778888889999964
No 167
>PLN02960 alpha-amylase
Probab=21.80 E-value=1.4e+02 Score=35.53 Aligned_cols=94 Identities=6% Similarity=0.120 Sum_probs=59.8
Q ss_pred hhhchHHH-HHHHHhcCCCeeeeecc--------cc-------cccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee-
Q 010049 103 QYHRYKED-VDIMANLNFDAYRFSIS--------WS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL- 165 (519)
Q Consensus 103 ~yhry~eD-i~lmk~lG~~~~Rfsi~--------Ws-------ri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL- 165 (519)
.|.-..+. |.-+|+||++++-+.=- |. .+.|.- |. .+=++.||++|.++||.+|+.+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 89999999999876521 11 111111 32 2348999999999999999986
Q ss_pred -ccCCC--cHHHH--H-----------h--cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 010049 166 -YHYDL--PEALE--K-----------K--YNGL-------LSKRVVKDFADYADFCFKTFG 202 (519)
Q Consensus 166 -~H~d~--P~~l~--~-----------~--~ggw-------~~~~~~~~F~~ya~~~~~~fg 202 (519)
.|+.. +.-|. + . +..| .++++++.+.+=|+.-+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35422 11110 0 0 0112 347788999999999999985
No 168
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.68 E-value=2.7e+02 Score=31.60 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=57.2
Q ss_pred hHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCCcH----HHHHh-----
Q 010049 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----ALEKK----- 177 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~P~----~l~~~----- 177 (519)
-++|++++++.|++.+|+..+-+.+ +-....++..+++|....+++..-+.|. .+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999865554 1235566777777777776664433341 11100
Q ss_pred -----------cCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccch
Q 010049 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (519)
Q Consensus 178 -----------~ggw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~ 216 (519)
-.|-..|.- ..+.++.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~~---~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPYA---AYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCHHH---HHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 045555543 3455556666665 3456777777654
No 169
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=21.60 E-value=1.7e+02 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee
Q 010049 112 DIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 112 ~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
+++|++|++..=++-|=.| +.+. | -++-+..++++||+|++|.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc----H------HHHHHHHHHHCCCEEEEEE
Confidence 8999999999888887777 3332 2 4778899999999999999
No 170
>PLN03153 hypothetical protein; Provisional
Probab=21.35 E-value=94 Score=34.56 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHcC-CcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHH----HHHHHHh--CCCcceEEeecccchhccccccCcc
Q 010049 154 LLKRG-ITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA----DFCFKTF--GDRVKNWMTFNEPRVVAALGYDNGF 226 (519)
Q Consensus 154 l~~~g-i~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya----~~~~~~f--gd~V~~W~t~NEp~~~~~~gy~~G~ 226 (519)
+++.| ++|+|+||||+.=. .-|-+-...+.++.|..=| ..++++. +|+..-|..- ...||..-.
T Consensus 327 ~les~p~~P~vSlHH~~~~~---p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~ 397 (537)
T PLN03153 327 LLSSHPIAPFVSIHHVEAVD---PFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQV 397 (537)
T ss_pred HhhcCCCCCceeeeeccccc---cccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEE
Confidence 44555 99999999999711 0112223345667776544 2223444 6777777664 667887766
Q ss_pred cCC
Q 010049 227 FAP 229 (519)
Q Consensus 227 ~~P 229 (519)
++-
T Consensus 398 y~~ 400 (537)
T PLN03153 398 FPS 400 (537)
T ss_pred ecC
Confidence 543
No 171
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.30 E-value=3.3e+02 Score=27.91 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=67.8
Q ss_pred chHHHHHHHHhcCCC--eeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEeeccCCC---cHHHH-----
Q 010049 106 RYKEDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEALE----- 175 (519)
Q Consensus 106 ry~eDi~lmk~lG~~--~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL~H~d~---P~~l~----- 175 (519)
...+-++.+++.|+. ++=+.+.|..-. ++=.+|.+-.---..++++|+++|+++++.+.=+-. +..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 346677888888854 555666675321 111333332233578999999999998886653222 22111
Q ss_pred ----HhcC----------------CCCChhhHHHHHHHHHHHHHHhCCCcceEEeecccc
Q 010049 176 ----KKYN----------------GLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (519)
Q Consensus 176 ----~~~g----------------gw~~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~ 215 (519)
++-| .+.||+.++.+.+..+.++...|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 177899999999999888877763 23567789996
No 172
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=21.15 E-value=3.7e+02 Score=28.72 Aligned_cols=105 Identities=12% Similarity=0.208 Sum_probs=62.9
Q ss_pred hHHHHHHHHhcCCCeeeeec-ccc-cccccCCCC-CChhHHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHHhcCCCC
Q 010049 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGK-VNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLL 182 (519)
Q Consensus 107 y~eDi~lmk~lG~~~~Rfsi-~Ws-ri~P~~~g~-~n~~gl~~Y~~li~~l~~~gi~p~-vtL~H~d~P~~l~~~~ggw~ 182 (519)
=+|.++.|+++|+|.+-+++ |-+ ++...- |+ .+. +-..+.++.+++.|++.+ +.| =+++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~~---~~~~~ai~~l~~~G~~~v~~dl-I~GlPg---------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHRV---KDIFAAVDLIHQAGIENFSLDL-ISGLPH---------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC----------
Confidence 36889999999999666666 332 222221 22 222 345778999999999843 443 456662
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEeecccchhccccccCcccC
Q 010049 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA 228 (519)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~~ 228 (519)
++.+.+.+=++.+.+-=-+.|......-||.......+..|.+.
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~ 222 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAP 222 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCC
Confidence 23444444444444433367777777778876555555555443
No 173
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=20.80 E-value=1.4e+02 Score=34.49 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHhcCCCeeeeecccccc----------------cccCCCCCCh-----hHHHHHHHHHHHHHHcCCcceEee
Q 010049 111 VDIMANLNFDAYRFSISWSRI----------------FPYGTGKVNW-----KGVAYYNQLINYLLKRGITPYANL 165 (519)
Q Consensus 111 i~lmk~lG~~~~Rfsi~Wsri----------------~P~~~g~~n~-----~gl~~Y~~li~~l~~~gi~p~vtL 165 (519)
|.-+|+||++++=+.=-=.-. -|..--.++. ..++=+++||++|.++||++|+.+
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 788999999998765411110 0000001111 124558999999999999999964
No 174
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=20.75 E-value=1e+02 Score=33.18 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCeeeeec--------------ccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceEee--ccCCC-c
Q 010049 109 EDVDIMANLNFDAYRFSI--------------SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--YHYDL-P 171 (519)
Q Consensus 109 eDi~lmk~lG~~~~Rfsi--------------~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~vtL--~H~d~-P 171 (519)
+-++.+++||+++.=++= .+.+|-|. .-.++-.+++++++.++||+.++.+ .|-.- -
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~------~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~ 106 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH------FGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEH 106 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc------cCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCcc
Confidence 567889999999874331 12222222 2345778999999999999999986 56333 3
Q ss_pred HHHHH
Q 010049 172 EALEK 176 (519)
Q Consensus 172 ~~l~~ 176 (519)
.|+.+
T Consensus 107 ~~f~~ 111 (505)
T COG0366 107 PWFKE 111 (505)
T ss_pred HHHHH
Confidence 45544
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.44 E-value=75 Score=20.25 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCcc
Q 010049 147 YNQLINYLLKRGITP 161 (519)
Q Consensus 147 Y~~li~~l~~~gi~p 161 (519)
-..+++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 367788888889887
No 176
>PLN02229 alpha-galactosidase
Probab=20.31 E-value=2.1e+02 Score=31.17 Aligned_cols=58 Identities=22% Similarity=0.460 Sum_probs=36.8
Q ss_pred chHHHHHH-----HHhcCCCeeeeecccccccccCCCCC--ChhHHHH---HHHHHHHHHHcCCcceEeecc
Q 010049 106 RYKEDVDI-----MANLNFDAYRFSISWSRIFPYGTGKV--NWKGVAY---YNQLINYLLKRGITPYANLYH 167 (519)
Q Consensus 106 ry~eDi~l-----mk~lG~~~~Rfsi~Wsri~P~~~g~~--n~~gl~~---Y~~li~~l~~~gi~p~vtL~H 167 (519)
..++-.+. ++++|.+.+=+.--|..-.-+..|.+ |.+ +| .+.+.|.+.++|++ ..||.
T Consensus 81 ~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~--rFP~G~k~ladyiH~~GlK--fGIy~ 148 (427)
T PLN02229 81 VIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPK--TFPSGIKLLADYVHSKGLK--LGIYS 148 (427)
T ss_pred HHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChh--hcCCcHHHHHHHHHHCCCc--eEEec
Confidence 34555665 48899999888889963211111322 322 22 68899999999998 45543
No 177
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.30 E-value=2.6e+02 Score=32.31 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCcceEeeccCCCcHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 010049 146 YYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFK 199 (519)
Q Consensus 146 ~Y~~li~~l~~~gi~p~vtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~ 199 (519)
.+..+++.++++|+..=+..+|-.++.-+..+||. ....+++--.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 555677777777777644
No 178
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.25 E-value=5.4e+02 Score=27.48 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=44.3
Q ss_pred chHHHHHHHHhcCCCeeeeecccccccccCCCCCChhHHHHHHHHHHHHHHcCCcceE-eeccCCCcHHHHHhcCCCCCh
Q 010049 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA-NLYHYDLPEALEKKYNGLLSK 184 (519)
Q Consensus 106 ry~eDi~lmk~lG~~~~Rfsi~Wsri~P~~~g~~n~~gl~~Y~~li~~l~~~gi~p~v-tL~H~d~P~~l~~~~ggw~~~ 184 (519)
...|-++.++++|.+.+=| ....+.|-+ -..... -...+++-+.|.++||++.. |..-+..|.+. .||..++
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~-~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~las~ 105 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQER-DQIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGFTSN 105 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHH-HHHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCCCCC
Confidence 4688899999999998843 334455654 111111 13467788889999999654 43323334331 2677775
Done!