BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010050
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/510 (49%), Positives = 336/510 (65%), Gaps = 2/510 (0%)
Query: 8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
KN ++ICAP+MA S+++++ +A GAD+VEIRLD + +F P +DL+ I+ K PLP
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 68 LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
L YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS + + I
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
VS + TPS EDL LV+R+Q TGADI+K+ + DI ++AR+F + S QVP I
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
+GERGL+S++L KF G L +G+L + V G PT++ L Y I DTKV+G+I
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
KPV HSK PI+HN F+ V++NG+YV + VD+L F YSS DFAGFS P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
CDEV PLA++I AVNTI+RR SDGKL+GYNTDC SI+AIED ++ G + S SP
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 366 LAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQ 425
LA + V+ K +GA+VVI + +ERA LA + G A D+ N+
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 426 PEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVS 485
PE G +LAN T +GM PN + P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VS
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVS 481
Query: 486 GVEMFLRQAIGQFNLFTGKEAPKEFMREIV 515
G EMF+RQA QF +FTG APKE +I+
Sbjct: 482 GSEMFVRQAYEQFEIFTGLPAPKELYWQIM 511
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 486 bits (1252), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/510 (49%), Positives = 335/510 (65%), Gaps = 2/510 (0%)
Query: 8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
KN ++ICAP+MA S+++++ +A GAD+VEIRLD + +F P +DL+ I+ K PLP
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 68 LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
L YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS + + I
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
VS + TPS EDL LV+R+Q TGADI+K+ + DI ++AR+F + S QVP I
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
+GERGL+S++L KF G L +G+L + V G PT++ L Y I DTKV+G+I
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
KPV HSK PI+HN F+ V++NG+YV + VD+L F YSS DFAGFS P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
CDEV PLA++I AVNTI+RR SDGKL+GYNTD SI+AIED ++ G + S SP
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 366 LAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQ 425
LA + V+ K +GA+VVI + +ERA LA + G A D+ N+
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 426 PEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVS 485
PE G +LAN T +GM PN + P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VS
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVS 481
Query: 486 GVEMFLRQAIGQFNLFTGKEAPKEFMREIV 515
G EMF+RQA QF +FTG APKE +I+
Sbjct: 482 GSEMFVRQAYEQFEIFTGLPAPKELYWQIM 511
>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
pdb|1NVT|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
Length = 287
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 145/296 (48%), Gaps = 27/296 (9%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
INA TKV GLI PV HS PI+HN F+ N +YV V ++LK +
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
GF+V P+K +MK+ DE+ AQ I AVNTI + DGK IGYNTD + A+E+ I
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 352 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 411
KN ++ ++ ++I + E+A++LA ++
Sbjct: 125 RVKDKN--------------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEI 170
Query: 412 -------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDYQLVFDA 463
G F L+ + I+ NATP+GM+PN D P V E LR+ +V D
Sbjct: 171 AEKLNKKFGEEVKFSG-LDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 464 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 519
+Y P +T LLK+A+ A ++G+ M + Q F ++TG E E M+ ++ K
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKI 285
>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis
pdb|3DOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis Complexed With Shikimate
Length = 277
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 38/290 (13%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPMF-VDDLKKFFSTYSSPDFAGFSV 295
F +I P+ HS P++H+ F+ +N Y I VP+ D+KK S S GF+V
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKS---IDGFNV 59
Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK--ER 353
P+KE ++ + D+++ A+++ AVNT++ + DGK IGYNTD + ++ + E
Sbjct: 60 TIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIED 117
Query: 354 GY----KNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS 409
Y G AS G +A ++ + + + I I+ A+S
Sbjct: 118 AYILILGAGGASKG--IANELYKI-VRPTLTVANRTMSRFNNWSLNINKINLSHAES--- 171
Query: 410 DVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK 469
++ I+ N TP GM+ NTD V +S L + LV D VY P K
Sbjct: 172 ---------------HLDEFDIIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYK 215
Query: 470 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 519
T +L +AE G I +G++MF+ Q F ++T E + M+ IV+ K
Sbjct: 216 TPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQKL 265
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 17/282 (6%)
Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
KV+GLI PV HS P++HN F + Y V+ + + + AG +V
Sbjct: 24 KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
P+K AV+ F DEV A+ I AVNTII +DG+L+GYNTD + A+E+ +
Sbjct: 84 IPHKLAVIPFLDEVDEHARRIGAVNTIIN--NDGRLVGYNTDGLGYVQALEEEM------ 135
Query: 357 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAAR 416
N T R+ V+ + R+ + + E+A+ L +
Sbjct: 136 NITLD-----GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS 190
Query: 417 PFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLK 474
+ + + I+ N T +GMHP + P+S E LR +V D +Y P +T+ LK
Sbjct: 191 AYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLK 250
Query: 475 DAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 516
+A+A GA + +GV M + Q F +TG+ M+++V+
Sbjct: 251 EAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVI 292
>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|B Chain B, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|C Chain C, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|D Chain D, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|E Chain E, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|F Chain F, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|G Chain G, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|H Chain H, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TNL|A Chain A, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|B Chain B, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|C Chain C, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|D Chain D, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad
Length = 315
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 231 VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSP 288
E I T++ GLI+ P+ HS P +HN F + + +Y+ V D LK + +
Sbjct: 30 TERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAM 89
Query: 289 DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIED 348
+ G++V P K + K+ D++ P A+ + AVNT++ DG L G+ TD + A+++
Sbjct: 90 NLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN--DDGVLTGHITDGTGYMRALKE 147
Query: 349 AIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDI--DF---- 401
A G + G+ + G + + IF+ DF
Sbjct: 148 A-------------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANA 194
Query: 402 ----ERAKSLASDVMGAARPFEDILNFQPE--KGAILANATPLGMHP-NTDRVPVSEETL 454
E+ S +D ED + E + I NAT +GM P + + S + L
Sbjct: 195 EKTVEKINS-KTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML 253
Query: 455 RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 514
R +V D VY P KTRLL+ AE G ++G+ M L Q F ++T KE P ++++EI
Sbjct: 254 RPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEI 313
Query: 515 VL 516
+
Sbjct: 314 LF 315
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 31/280 (11%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
INA T+++G+I PV HS P+ N R+ N +Y+ + ++LKK F + +
Sbjct: 2 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
G +V P+KE ++ D V A+ I AVNT+ + +GK GYNTD + +++ I
Sbjct: 62 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 352 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 411
E K+ G+ A R + GA+V +++ E+A LA
Sbjct: 120 EVKEKS-ILVLGAGGASRAVIYALV------------KEGAKVFLWNRTKEKAIKLAQKF 166
Query: 412 MGAARPFEDILNFQPE----KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467
P E ++N PE K ++ N T +G+ + D + + ++ +V D +Y
Sbjct: 167 -----PLE-VVN-SPEEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY-- 216
Query: 468 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 507
++T+LLK A+ GA ++ G+ M L Q I F ++ G E P
Sbjct: 217 KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 256
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 31/280 (11%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
INA T+++G+I PV HS P+ N R+ N +Y+ + ++LKK F + +
Sbjct: 8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
G +V P+KE ++ D V A+ I AVNT+ + +GK GYNTD + +++ I
Sbjct: 68 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 352 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 411
E K+ G+ A R + GA+V +++ E+A LA
Sbjct: 126 EVKEKS-ILVLGAGGASRAVIYALV------------KEGAKVFLWNRTKEKAIKLAQKF 172
Query: 412 MGAARPFEDILNFQPE----KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467
P E ++N PE K ++ N T +G+ + D + + ++ +V D +Y
Sbjct: 173 -----PLE-VVN-SPEEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY-- 222
Query: 468 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 507
++T+LLK A+ GA ++ G+ M L Q I F ++ G E P
Sbjct: 223 KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 262
>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
Length = 312
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 130/302 (43%), Gaps = 40/302 (13%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSP----- 288
+ A ++ GL++ P+ HS P + N Y+ VD+ +T++S
Sbjct: 27 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN-----TTFASAIEGLK 81
Query: 289 --DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
G V P K+ ++ DE+ P A+ + A+NTI+ DG L GYNTD I AI
Sbjct: 82 ALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI 139
Query: 347 EDAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFE 402
KE G+ + G+ VL G + + D FE
Sbjct: 140 ----KESGFD---------MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFE 186
Query: 403 RAKSLA------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETL 454
+A + A +D + D F + IL N T +GM P + + + +L
Sbjct: 187 KAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSL 246
Query: 455 -RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 513
R LV + VY P T+LL+ A+ AG + G M L Q QF L+TGK P +++++
Sbjct: 247 LRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQ 306
Query: 514 IV 515
++
Sbjct: 307 VM 308
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 117/272 (43%), Gaps = 39/272 (14%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY---------VPMFVDDLKKFFSTYSSPDFA 291
F ++ PV HS P +H + G Y +P + ++++ F
Sbjct: 4 FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFR-------- 55
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
G ++ P KEA + D V P AQ I AVNT+++ +G+L G+NTD + A++
Sbjct: 56 GVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALKAG-- 111
Query: 352 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 411
G PL G VL ++ G V +++ +RA +LA +
Sbjct: 112 -----------GIPLKGPALVLGAGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEF 159
Query: 412 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 471
A P E + + +L NAT +G+ + P+ E + D VY P TR
Sbjct: 160 GLRAVPLE-----KAREARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTR 213
Query: 472 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 503
L++A+A G + +G+ M Q F L+TG
Sbjct: 214 FLREAKAKGLKVQTGLPMLAWQGALAFRLWTG 245
>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Nad
pdb|3JYP|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Quinate And Nadh
pdb|3JYQ|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Shikimate And Nadh
Length = 283
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 43/302 (14%)
Query: 237 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 287
D+ + GLI + + S+ P +H +R ++ G DLK
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 60
Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
F G ++ PYK+AV+ DEV A + AVNT++ + G G+NTD +E
Sbjct: 61 LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 119
Query: 348 DAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSL 407
+ + A S + + K + + D+D RA++L
Sbjct: 120 EGLPN-------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQ-----VADLDTSRAQAL 167
Query: 408 ASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETLR 455
A + A AR ED++ G + NATP+GM HP T L
Sbjct: 168 ADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCLT 220
Query: 456 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 515
V D VY P +T LLK A A G + G M + QA+ F LFTG E MRE
Sbjct: 221 KDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETF 280
Query: 516 LA 517
L+
Sbjct: 281 LS 282
>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From
Corynebacterium Glutamicum
Length = 302
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 43/302 (14%)
Query: 237 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 287
D+ + GLI + + S+ P +H +R ++ G DLK
Sbjct: 22 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 79
Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
F G ++ PYK+AV+ DEV A + AVNT++ + G G+NTD +E
Sbjct: 80 LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 138
Query: 348 DAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSL 407
+ + A S + + K + + D+D RA++L
Sbjct: 139 EGLPN-------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQ-----VADLDTSRAQAL 186
Query: 408 ASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETLR 455
A + A AR ED++ G + NATP+GM HP T L
Sbjct: 187 ADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCLT 239
Query: 456 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 515
V D VY P +T LLK A A G + G M + QA+ F LFTG E MRE
Sbjct: 240 KDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETF 299
Query: 516 LA 517
L+
Sbjct: 300 LS 301
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 35/288 (12%)
Query: 234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
IN DT++ L +P G HN + + N IY D++ + G
Sbjct: 2 INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
+V P+KE M F DE+HP AQAI +VNTI+ +G L YNTD A + I E
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVN--DNGFLRAYNTDYIAIVKLI-----E 112
Query: 353 RGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV- 411
+ + N A +G M ++ + FE+ K A +V
Sbjct: 113 KYHLNKNAKVIVHGSGGM------------------AKAVVAAFKNSGFEKLKIYARNVK 154
Query: 412 ----MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--EETLRDYQLVFDAVY 465
+ A + I + + ++ IL N T +GM + + ++ + + + + FD V
Sbjct: 155 TGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA 214
Query: 466 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 513
P +T ++ A+A G +SG + + QA+ QF L+T + E + E
Sbjct: 215 MPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAE 262
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 29/267 (10%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPMFVDDLKKFFSTYSSPD 289
++ +T ++GLI + +GHS +H F V GIY VP + LK+ T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIK 58
Query: 290 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 349
G +V PYK VMK E+ A+ I AVNT+ + S + G+NTD
Sbjct: 59 CGGLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDY---------- 106
Query: 350 IKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS 409
G+ + F + + V+ K A+ + R S
Sbjct: 107 ---IGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYV---VTRNPEKTS 160
Query: 410 DVMGAAR--PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467
++ G + ++++ N KG ++ N TP GM+P PV +E + + D +Y P
Sbjct: 161 EIYGEFKVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP 217
Query: 468 RKTRLLKDAEAAGAIIVSGVEMFLRQA 494
+T LK A +G V+G+ M + QA
Sbjct: 218 VETLFLKYARESGVKAVNGLYMLVSQA 244
>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
pdb|1VI2|B Chain B, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
Length = 300
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 30/296 (10%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
+ A ++ GL + P+ HS P N Y VD+ +
Sbjct: 5 VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 64
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
G V P K+ ++ DE+ P A+ + A+NTI+ DG L GYNTD I AI K
Sbjct: 65 GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 118
Query: 352 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFERAKSL 407
E G+ + G+ VL G + + D F++A +
Sbjct: 119 ESGFD---------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 169
Query: 408 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 458
A +D + D F + IL N T +G P + V++ L
Sbjct: 170 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGL 229
Query: 459 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 514
LV + VY P T+LL+ A+ AG + G L Q QF L+TGK+ P E+++++
Sbjct: 230 LVTECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 285
>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1NPD|B Chain B, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1O9B|A Chain A, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
pdb|1O9B|B Chain B, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
Length = 288
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 30/296 (10%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
+ A ++ GL + P+ HS P N Y VD+ +
Sbjct: 3 VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 62
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
G V P K+ ++ DE+ P A+ + A+NTI+ DG L GYNTD I AI K
Sbjct: 63 GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 116
Query: 352 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFERAKSL 407
E G+ + G+ VL G + + D F++A +
Sbjct: 117 ESGFD---------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 167
Query: 408 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 458
A +D + D F + IL N T +G P + V++ L
Sbjct: 168 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGL 227
Query: 459 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 514
LV + VY P T+LL+ A+ AG + G L Q QF L+TGK+ P E+++++
Sbjct: 228 LVTECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 283
>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHG|B Chain B, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHH|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate
pdb|3PHI|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHI|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHJ|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
pdb|3PHJ|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
Length = 269
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 45/290 (15%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 414
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 415 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 468
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREI 514
T L A+ G +M + QA F F+ + P E MR +
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSV 262
>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
pdb|4FOO|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
Length = 271
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 45/292 (15%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 414
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 415 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 468
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 516
T L A+ G +M + +A F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FR5|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 45/292 (15%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 414
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 415 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 468
+P K A ++ NAT +H + +P+++E L+ Y +L +D + +
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGF 212
Query: 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 516
T L A+ G +M + QA F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
pdb|4FPX|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
Length = 271
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 414
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 415 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 468
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 516
T L A+ G +M + A F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYNAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 414
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 415 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 468
+P K A ++ NAT +H + +P+++E L+ Y +L +D Y
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 516
T L A+ G +M + A F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FQ8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 45/292 (15%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + S + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A AVNT++ + +L+GYNTD ++K++
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 414
Y+N G+ + + SRG +DF + L D
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 415 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 468
+P K A ++ NAT +H + +P+++E L+ Y +L +D +
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LAAGF 212
Query: 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 516
T L A+ G +M + QA F F+ + P E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFL 264
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 34/283 (12%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSS-PDF 290
I T++ ++ P+ K P N F H N N +P+ + + L F T +
Sbjct: 2 IRGSTELVAIVGSPIAQVKSPQNFNTWFNHNNCNLAMLPIDLHEAALDSFADTLRGWQNL 61
Query: 291 AGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAI 350
G V PYK+A+ D + A A+ ++N +IRR DG+L+G N D + A
Sbjct: 62 RGCVVTVPYKQALANRVDGLSERAAALGSIN-VIRRERDGRLLGDNVDGAGFL----GAA 116
Query: 351 KERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASD 410
+ G++ P R V+ ++ A + + D R ++ +
Sbjct: 117 HKHGFE--------PAGKRALVIGCGGVGSAIAYALAEAGIASITLCDPSTARMGAVC-E 167
Query: 411 VMGAARP-------FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQ---LV 460
++G P F + +F ++ANA+P+GM + +P+S L Q LV
Sbjct: 168 LLGNGFPGLTVSTQFSGLEDFD-----LVANASPVGMGTRAE-LPLSAALLATLQPDTLV 221
Query: 461 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 503
D V +P T LL A G I +G EM Q +G F G
Sbjct: 222 ADVVTSPEITPLLNRARQVGCRIQTGPEMAFAQ-LGHLGAFMG 263
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 63/301 (20%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
K FG+ P+ HSK P++HN F + + + G Y P+ + + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE + CD++ +A A++NT++ + +L+GYNTD ++K +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDA----LGFYLSLKHQN 117
Query: 355 YKN----GTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFD-----IDFERAK 405
Y+N G+ LA + K +G +V + + +DF +
Sbjct: 118 YQNALILGSGGSAKALACGL-----------------KKQGLKVSVLNRSPRGLDF--FQ 158
Query: 406 SLASDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QL 459
L D +P K A ++ NAT ++ + +P+++E L+ Y +L
Sbjct: 159 RLGCDCF-----------MEPPKSAFDLIINATSASLN---NELPLNKEVLKGYFKEAKL 204
Query: 460 VFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIV 515
+D Y T L A+ G +M + QA F F+ + P E MR +
Sbjct: 205 AYDLAYG-FLTPFLALAKELKIPFQDGKDMLIYQASLSFEKFSASQIPYSKAFEVMRSVF 263
Query: 516 L 516
L
Sbjct: 264 L 264
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 14/234 (5%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-----KPLPV 67
IC P++ ++ + ++ + K D++E R+D N + K+++ +L + +P+
Sbjct: 22 ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 68 LIVYRPKWAGG--LYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYS-SHQSGT 124
L +R GG L D + L ++ D +D EL + ++ + + +H+
Sbjct: 82 LFTFRSVVEGGEKLISRDYYTTLNK-EISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEV 140
Query: 125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HC 179
+ I+S + +TP +E++ + RMQ GAD+ K+ + ++ + + + +
Sbjct: 141 KVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYA 200
Query: 180 QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
PII S+ G++S+L F AL +G+ K G + + L + H
Sbjct: 201 DRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLH 254
>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
Length = 276
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 16/235 (6%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
I LM +++ V S + D++E R+D N + + I+T KPL
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
L +R AGG + ++ A D G D +D EL + + +HQ
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
I+S + +TP+ E++ + +MQ GADI K+ ++ + Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
PII S+ + G++S+L F A +G++K G +V LR + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274
>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1QFE|B Chain B, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1L9W|A Chain A, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|B Chain B, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|C Chain C, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|D Chain D, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1GQN|A Chain A, Native 3-Dehydroquinase From Salmonella Typhi
Length = 252
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 12/233 (5%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDL----EIILTKKP-LPV 67
I LM + + V + + D++E R+D + + + +I P +P+
Sbjct: 18 IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPL 77
Query: 68 LIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRF 126
L +R GG L A D G D +D EL + + +
Sbjct: 78 LFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVY 137
Query: 127 IVSCNLDC-ETPSEEDLGYLVSRMQATGADIIKLVF---SVNDI-TEIARIFQLLSH-CQ 180
+V N D +TPS E++ + +MQA GADI K+ S +D+ T + ++ H
Sbjct: 138 VVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYAD 197
Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
P+I S+ + G++S+L F A +G++K G V LR + H
Sbjct: 198 RPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH 250
>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
pdb|3O1N|B Chain B, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
Length = 276
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
I LM +++ V S + D++E R+D N + + I+T KPL
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
L +R GG + ++ A D G D +D EL + + +HQ
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
I+S + +TP+ E++ + +MQ GADI K+ ++ + Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
PII S+ + G++S+L F A +G++K G +V LR + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274
>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|E Chain E, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|F Chain F, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3OEX|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|4GFS|A Chain A, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GFS|B Chain B, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GUI|A Chain A, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUI|B Chain B, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUJ|A Chain A, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
pdb|4GUJ|B Chain B, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
Length = 255
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKD-------LEIILTKKPL 65
I LM +++ V S + D++E R+D N + + I+T KPL
Sbjct: 21 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
L +R GG + ++ A D G D +D EL + + +HQ
Sbjct: 81 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
I+S + +TP+ E++ + +MQ GADI K+ ++ + Q
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
PII S+ + G++S+L F A +G++K G +V LR + H
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 253
>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3L2I|B Chain B, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3LB0|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3LB0|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3S42|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
pdb|3S42|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
Length = 276
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
I LM +++ V S + D++E R+D N + + I+T KPL
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
L +R GG + ++ A D G D +D EL + + +HQ
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
I+S + +TP+ E++ + +MQ GADI K+ ++ + Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
PII S+ + G++S+L F A +G++K G +V LR + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
+ + P+ HSK P +H R + IY VP+ F + K FF+ G +
Sbjct: 32 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 87
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE +F D + A+ AVNT +++ DG+++G NTD E ++D + ++
Sbjct: 88 VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 143
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 413
G + ++ + A + + + F +A+ LA V
Sbjct: 144 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 194
Query: 414 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 467
A+ FE + + ++ N+T G P D V S + + +D +Y
Sbjct: 195 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 245
Query: 468 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 514
T + A G A + G+ M + QA F L+ G + K+ +RE+
Sbjct: 246 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 294
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
+ + P+ HSK P +H R + IY VP+ F + K FF+ G +
Sbjct: 5 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 60
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE +F D + A+ AVNT +++ DG+++G NTD E ++D + ++
Sbjct: 61 VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 116
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 413
G + ++ + A + + + F +A+ LA V
Sbjct: 117 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 167
Query: 414 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 467
A+ FE + + ++ N+T G P D V S + + +D +Y
Sbjct: 168 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 218
Query: 468 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 514
T + A G A + G+ M + QA F L+ G + K+ +RE+
Sbjct: 219 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 267
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
+ + P+ HSK P +H R + IY VP+ F + K FF+ G +
Sbjct: 11 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 66
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
V P+KE +F D + A+ AVNT +++ DG+++G NTD E ++D + ++
Sbjct: 67 VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 122
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 413
G + ++ + A + + + F +A+ LA V
Sbjct: 123 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 173
Query: 414 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 467
A+ FE + + ++ N+T G P D V S + + +D +Y
Sbjct: 174 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 224
Query: 468 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 514
T + A G A + G+ M + QA F L+ G + K+ +RE+
Sbjct: 225 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 273
>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
pdb|1SFL|B Chain B, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
Length = 238
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTKKPLPVLIVYRPKWA 76
S+E+ L + + DV+E+R+D N + E+I + + +L+ YR K
Sbjct: 15 SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 77 GGL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQ---YSSHQSGTRFIVSCN 131
GG + D + L + LA G D +D E + +I Q Q I+S +
Sbjct: 75 GGYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQVPIIA 185
TP ++L ++ +MQ + +KL ++ ++ + Q +S C+V +
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VG 191
Query: 186 YSVGERGLVSQLLSPKFNGALVYGSLKGTP 215
S+ + GL+S+ F GAL YG + G P
Sbjct: 192 ISMSKLGLISRTAQGVFGGALTYGCI-GEP 220
>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Thermotoga Maritima
Length = 253
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 47/286 (16%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VP--MFVDDLKKFFSTYSSPDFAGFS 294
F +I PV HS P L+N F+ N Y +P F ++++ Y GF+
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
P+KE VM++ + AQ I AVN + R GK GYNTD + ++E +
Sbjct: 58 ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSLEGVEVKE- 109
Query: 355 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDIDFERAKSLASDVMG 413
G ++ L G + + + + ERAK+L V
Sbjct: 110 -PVVVVGAGGAARAVIYALL--------------QMGVKDIWVVNRTIERAKALDFPV-- 152
Query: 414 AARPFE-DILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 472
+ F D L+ +K L N T +GM + +PVS+++L++ LV+D +Y T L
Sbjct: 153 --KIFSLDQLDEVVKKAKSLFNTTSVGM--KGEELPVSDDSLKNLSLVYDVIYF--DTPL 206
Query: 473 LKDAEAAGAI-IVSGVEMFLRQAIGQFNLF--TGKEAPKEFMREIV 515
+ A G I+ G MF QA+ ++ +E KE E++
Sbjct: 207 VVKARKLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEVL 252
>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
Length = 276
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKD-------LEIILTKKPL 65
I LM +++ V S + D++E R+D N + + I+T KPL
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
L +R GG + ++ A D G D +D EL + + +HQ
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
I+S + +TP+ E++ + +MQ GADI + ++ + Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
PII S+ + G++S+L F A +G++K G +V LR + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPM--FVDDLKKFFSTYSSPDFAG 292
+ + + P+ HSK P +H + +N Y + P+ F++ L FFS G
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGK----G 57
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
+V P+KE DE+ A AVNT++R DG+L+G NTD ++ +E
Sbjct: 58 ANVTVPFKEEAFARADELTERAALAGAVNTLMRL-EDGRLLGDNTDGVGLLSDLE 111
>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
pdb|1SFJ|B Chain B, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
Length = 238
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTKKPLPVLIVYRPKWAG 77
+E+ L + + DV+E+R+D N + E+I + + +L+ YR K G
Sbjct: 16 IEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQG 75
Query: 78 GL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQ---YSSHQSGTRFIVSCNL 132
G + D + L + LA G D +D E + +I Q Q I+S +
Sbjct: 76 GYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHN 134
Query: 133 DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQVPIIAY 186
TP ++L ++ +MQ + +KL ++ ++ + Q +S C+V +
Sbjct: 135 FESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VGI 192
Query: 187 SVGERGLVSQLLSPKFNGALVYGSLKGTP 215
S+ + GL+S+ F GAL YG + G P
Sbjct: 193 SMSKLGLISRTAQGVFGGALTYGCI-GEP 220
>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
pdb|2OX1|B Chain B, Archaeal Dehydroquinase
pdb|2OX1|C Chain C, Archaeal Dehydroquinase
pdb|2OX1|D Chain D, Archaeal Dehydroquinase
Length = 196
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 34 AEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93
AE ADVVE+R+D + D E ILT + + GG +EGDE +R+E +
Sbjct: 16 AEKADVVELRIDLFDFSGARVDKEKILTCRRVS---------DGGKFEGDERERIEKMKR 66
Query: 94 AED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT 152
A D L DYVD E + S+ R I S + TP +L +V +
Sbjct: 67 AFDSLNPDYVDLESDLPD-------SAFDFNCRIIESYHNFIRTPDYSELKGIVEGRRGD 119
Query: 153 GADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK 212
I + S D+ I RI ++A+ +GER +++L+ +Y +
Sbjct: 120 LVKIATMGKSKRDVETIVRILTNYDD----VVAFLMGERFSFTRVLAAYLGSPFIYCYV- 174
Query: 213 GTP 215
G+P
Sbjct: 175 GSP 177
>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
Length = 257
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 29/240 (12%)
Query: 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--------P 64
ICAP++ + +VL + + D++E R D F+ D E +L
Sbjct: 22 ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADF---FRAIDDQERVLATANGLRNIAGE 78
Query: 65 LPVLIVYRPKWAGG----LYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILGKQYSS 119
+P+L R + GG L E + + +EA+ + GA D VD+EL I + +
Sbjct: 79 IPILFTIRSEREGGQPIPLNEAEVRRLIEAICRS---GAIDLVDYELAYGERIADVRRMT 135
Query: 120 HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC 179
+ +VS + TP +E L + + + GADI K+ ++ + Q
Sbjct: 136 EECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEA 195
Query: 180 Q----VPIIAYSVGERGLVSQLLSPKFNGALVYG-----SLKGT-PVLGLPTVESLRQTY 229
+ +P+I ++G G +++L F A+ + S G P+ + TV S+ QTY
Sbjct: 196 RRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQTY 255
>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas
Putida
Length = 272
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 24/269 (8%)
Query: 241 FGLISKPVGHSKGPILH----NPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG 296
+ +I +P+ H+K P++H + + + Y I + DD + + S G ++
Sbjct: 5 YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSL--DDFEAQVLQFRSEGGKGMNIT 62
Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
P+K + D AQ A N + + DG+++ N D + IE+
Sbjct: 63 APFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEE-------- 112
Query: 357 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRG-ARVVIFDIDFERAKSLASDVMGAA 415
+ G PL R +L G + +VI + D +A +L +++ +
Sbjct: 113 ----NLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSR 168
Query: 416 RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD 475
+ + I+ NAT + D P+ + L + L ++ Y T L+
Sbjct: 169 LRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTPFLRL 226
Query: 476 AEAAG-AIIVSGVEMFLRQAIGQFNLFTG 503
A G A + GV M + QA F + G
Sbjct: 227 AREQGQARLADGVGMLVEQAAEAFAWWRG 255
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 28 NMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDE 84
N+ +AK +GAD+VE+R+D ++ + LE + ++ +L + P+ G + E
Sbjct: 15 NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTILTIRSPEEGGREVKNRE 74
Query: 85 HKRLEALHLAEDLG--ADYVDFELKVASNILGKQYS-SHQSGTRFIVSC-NLDCETPSEE 140
L E+L +DY D EL + +L K Y+ + ++G + I+S N + P+
Sbjct: 75 E-------LFEELSPLSDYTDIELS-SRGLLVKLYNITKEAGKKLIISYHNFELTPPN-- 124
Query: 141 DLGYLVSRMQATG---ADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQL 197
+++ + G I K+ N ++AR+ + + I S+G+ G +S+L
Sbjct: 125 ---WIIREVLREGYRYGGIPKIAVKANSYEDVARLLCISRQVEGEKILISMGDYGKISRL 181
Query: 198 LSPKFNGALVYGSLK 212
F + Y SL+
Sbjct: 182 AGYVFGSVITYCSLE 196
>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P74|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P77|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) From
Haemophilus Influenzae
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF--VDDLKKFFSTYSSPDFAGFSVGF 297
++ + P+ SK P++ N + Y+ +D ++ + G ++
Sbjct: 3 LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 298 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
P+KE + DE A+ A NT +++ DGKL NTD +T ++
Sbjct: 63 PFKERAYQLADEYSQRAKLAEACNT-LKKLDDGKLYADNTDGIGLVTDLQ 111
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 83 DEHKRLEALHLAEDLGADYV----DFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
D KRLEA+ EDLGA + D E++ A +LG++ QSG+ + +L E
Sbjct: 928 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE----QSGSMETIGFSLYME 980
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 INADTKVFGLISK 246
+ +F + S+
Sbjct: 126 TDLPQILFNVPSR 138
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP PT E L Q +K EH
Sbjct: 90 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPTQEGLFQHFKAIAEH 149
Query: 234 IN 235
+
Sbjct: 150 TD 151
>pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
pdb|4E6P|B Chain B, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
pdb|4E6P|C Chain C, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
pdb|4E6P|D Chain D, Crystal Structure Of A Probable Sorbitol Dehydrogenase
(Target Psi- 012078) From Sinorhizobium Meliloti 1021
Length = 259
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 391 GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILA----NATPLGMHPNT-- 444
GA V I DID ERA+ A+++ AA + + Q A +A +A L + N
Sbjct: 32 GATVAIADIDIERARQAAAEIGPAAYAVQXDVTRQDSIDAAIAATVEHAGGLDILVNNAA 91
Query: 445 --DRVPVSEETLRDYQLVF 461
D P+ E T Y+ +F
Sbjct: 92 LFDLAPIVEITRESYEKLF 110
>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
pdb|1S5V|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
Length = 292
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYFNRPSQEGLYQHFKAIAEH 125
Query: 234 IN 235
+
Sbjct: 126 TD 127
>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w
pdb|3DEN|B Chain B, Structure Of E. Coli Dhdps Mutant Y107w
Length = 292
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYWNRPSQEGLYQHFKAIAEH 125
Query: 234 INADTKVFGLISK 246
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 IN 235
+
Sbjct: 126 TD 127
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 IN 235
+
Sbjct: 126 TD 127
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 INADTKVFGLISK 246
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 IN 235
+
Sbjct: 126 TD 127
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 INADTKVFGLISK 246
+ ++ + S+
Sbjct: 126 TDLPQILYNVPSR 138
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK--VEH 233
L+ ++P+IA + + L+ +FN + + G L TP P+ E L Q +K EH
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 234 IN 235
+
Sbjct: 126 TD 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,688,214
Number of Sequences: 62578
Number of extensions: 620171
Number of successful extensions: 1292
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 71
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)