Query 010050
Match_columns 519
No_of_seqs 302 out of 2094
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 20:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02520 bifunctional 3-dehydr 100.0 1E-121 3E-126 992.1 56.8 513 2-517 14-528 (529)
2 PRK09310 aroDE bifunctional 3- 100.0 3E-106 6E-111 863.1 51.8 458 12-510 1-462 (477)
3 COG0169 AroE Shikimate 5-dehyd 100.0 1.7E-72 3.8E-77 558.6 31.1 271 234-518 2-280 (283)
4 PRK14027 quinate/shikimate deh 100.0 4E-71 8.6E-76 553.8 29.4 265 237-517 3-282 (283)
5 PRK12749 quinate/shikimate deh 100.0 1.3E-70 2.9E-75 551.7 30.5 266 234-515 3-284 (288)
6 PRK12549 shikimate 5-dehydroge 100.0 2.3E-70 5.1E-75 550.0 30.7 266 235-517 2-280 (284)
7 PRK12548 shikimate 5-dehydroge 100.0 3.9E-69 8.5E-74 543.4 30.0 267 234-516 5-288 (289)
8 PRK00258 aroE shikimate 5-dehy 100.0 1.9E-68 4.2E-73 536.1 30.8 268 235-517 2-274 (278)
9 PRK12550 shikimate 5-dehydroge 100.0 3.8E-68 8.3E-73 528.9 31.3 262 233-517 4-269 (272)
10 TIGR01809 Shik-DH-AROM shikima 100.0 5.9E-67 1.3E-71 525.5 28.7 263 237-515 4-282 (282)
11 TIGR00507 aroE shikimate 5-deh 100.0 3E-65 6.6E-70 511.2 30.5 264 239-517 1-267 (270)
12 PRK02412 aroD 3-dehydroquinate 100.0 2.2E-53 4.7E-58 420.0 25.5 228 6-233 11-250 (253)
13 COG0710 AroD 3-dehydroquinate 100.0 5E-53 1.1E-57 404.2 23.5 222 10-232 1-228 (231)
14 TIGR01093 aroD 3-dehydroquinat 100.0 4.3E-52 9.4E-57 405.6 23.5 217 12-229 1-228 (228)
15 PF01487 DHquinase_I: Type I 3 100.0 1.2E-51 2.6E-56 401.9 18.2 217 14-230 1-224 (224)
16 PRK13575 3-dehydroquinate dehy 100.0 1.6E-50 3.5E-55 394.4 23.6 219 11-231 4-237 (238)
17 cd00502 DHQase_I Type I 3-dehy 100.0 5.2E-50 1.1E-54 390.5 23.9 215 12-230 1-224 (225)
18 PRK13576 3-dehydroquinate dehy 100.0 2.5E-49 5.3E-54 378.8 20.4 204 9-232 1-206 (216)
19 PRK01261 aroD 3-dehydroquinate 100.0 1.2E-44 2.5E-49 349.9 22.1 206 5-232 15-226 (229)
20 KOG0692 Pentafunctional AROM p 100.0 2E-38 4.3E-43 321.8 -9.2 460 34-512 118-589 (595)
21 PF08501 Shikimate_dh_N: Shiki 99.9 1.3E-28 2.8E-33 202.0 5.9 81 243-323 1-83 (83)
22 PRK14192 bifunctional 5,10-met 99.9 1.5E-24 3.2E-29 216.9 17.7 214 241-499 38-279 (283)
23 cd01065 NAD_bind_Shikimate_DH 99.9 1.6E-23 3.5E-28 191.8 17.8 152 337-503 1-155 (155)
24 PF01488 Shikimate_DH: Shikima 99.7 1.7E-16 3.7E-21 142.5 7.6 98 365-470 9-114 (135)
25 cd05311 NAD_bind_2_malic_enz N 99.6 9.8E-16 2.1E-20 149.2 9.2 137 339-496 9-160 (226)
26 cd01078 NAD_bind_H4MPT_DH NADP 99.6 2E-14 4.3E-19 137.0 12.3 166 334-514 3-190 (194)
27 TIGR02853 spore_dpaA dipicolin 99.4 2.3E-13 4.9E-18 137.3 7.7 120 364-491 147-268 (287)
28 TIGR02992 ectoine_eutC ectoine 99.3 2.3E-12 4.9E-17 132.6 9.6 130 315-468 93-229 (326)
29 PRK08291 ectoine utilization p 99.3 3.1E-12 6.8E-17 131.8 9.4 130 315-468 96-232 (330)
30 COG0373 HemA Glutamyl-tRNA red 99.3 1.1E-11 2.4E-16 129.0 8.9 139 365-506 175-334 (414)
31 PRK08306 dipicolinate synthase 99.3 8E-12 1.7E-16 126.7 7.6 117 364-491 148-269 (296)
32 PRK13940 glutamyl-tRNA reducta 99.2 3.3E-11 7.3E-16 127.2 11.4 133 365-505 178-332 (414)
33 PRK00045 hemA glutamyl-tRNA re 99.2 1.5E-11 3.4E-16 130.8 6.2 189 299-505 113-339 (423)
34 PLN00203 glutamyl-tRNA reducta 98.8 1.6E-08 3.5E-13 109.5 10.2 133 365-505 263-428 (519)
35 TIGR01035 hemA glutamyl-tRNA r 98.8 2.8E-08 6.1E-13 105.7 10.0 133 365-505 177-336 (417)
36 PRK14175 bifunctional 5,10-met 98.7 6.4E-07 1.4E-11 89.7 16.6 213 242-499 38-279 (286)
37 PRK06141 ornithine cyclodeamin 98.7 8E-08 1.7E-12 98.5 10.5 136 330-488 102-244 (314)
38 cd05213 NAD_bind_Glutamyl_tRNA 98.6 5.3E-08 1.1E-12 99.7 5.8 98 366-470 176-278 (311)
39 PRK14194 bifunctional 5,10-met 98.6 2.2E-06 4.9E-11 86.3 16.5 199 258-504 55-288 (301)
40 COG1748 LYS9 Saccharopine dehy 98.5 1.4E-07 3.1E-12 98.0 7.6 125 369-499 2-142 (389)
41 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 2.5E-06 5.4E-11 81.7 13.1 147 339-503 6-155 (200)
42 cd01080 NAD_bind_m-THF_DH_Cycl 98.4 1.4E-06 3.1E-11 81.0 10.8 78 364-466 40-118 (168)
43 PRK10792 bifunctional 5,10-met 98.4 6.8E-06 1.5E-10 82.2 15.9 202 258-503 55-284 (285)
44 PRK08618 ornithine cyclodeamin 98.4 5.5E-07 1.2E-11 92.8 8.3 94 367-468 126-226 (325)
45 PRK07340 ornithine cyclodeamin 98.4 2.6E-06 5.7E-11 86.9 12.8 97 366-470 123-224 (304)
46 TIGR00518 alaDH alanine dehydr 98.4 1.6E-06 3.4E-11 90.9 10.2 100 366-469 165-272 (370)
47 PRK14179 bifunctional 5,10-met 98.3 1.4E-05 3E-10 80.1 15.5 202 259-503 55-283 (284)
48 cd05191 NAD_bind_amino_acid_DH 98.3 5E-06 1.1E-10 68.5 10.0 80 338-463 2-85 (86)
49 PRK14189 bifunctional 5,10-met 98.3 2.8E-05 6E-10 78.0 15.9 201 259-502 55-282 (285)
50 PRK14188 bifunctional 5,10-met 98.2 9.1E-06 2E-10 82.0 11.5 159 259-467 55-233 (296)
51 PRK14176 bifunctional 5,10-met 98.2 2.2E-05 4.7E-10 78.6 13.3 183 241-467 43-239 (287)
52 PRK14191 bifunctional 5,10-met 98.2 9.2E-05 2E-09 74.2 17.5 200 258-500 53-279 (285)
53 PRK14982 acyl-ACP reductase; P 98.2 5.2E-06 1.1E-10 85.4 8.8 109 364-485 151-264 (340)
54 PRK00676 hemA glutamyl-tRNA re 98.2 5.4E-06 1.2E-10 85.0 8.5 89 365-470 171-266 (338)
55 PRK14190 bifunctional 5,10-met 98.1 0.00012 2.6E-09 73.4 16.6 203 258-504 54-284 (284)
56 PRK14178 bifunctional 5,10-met 98.1 0.00016 3.4E-09 72.3 17.2 214 241-499 31-272 (279)
57 PLN02819 lysine-ketoglutarate 98.1 5.3E-06 1.2E-10 96.1 6.9 126 367-498 568-721 (1042)
58 PF03446 NAD_binding_2: NAD bi 98.1 2.2E-06 4.7E-11 79.4 2.9 110 369-484 2-116 (163)
59 PRK14182 bifunctional 5,10-met 98.1 0.0001 2.2E-09 73.6 14.9 196 259-502 53-281 (282)
60 PF03807 F420_oxidored: NADP o 98.1 2.1E-06 4.5E-11 71.9 2.4 88 370-464 1-94 (96)
61 PRK14180 bifunctional 5,10-met 98.0 0.00017 3.7E-09 72.2 16.2 198 259-499 54-278 (282)
62 PF03435 Saccharop_dh: Sacchar 98.0 1.9E-06 4.2E-11 90.8 1.8 123 371-499 1-141 (386)
63 PLN02897 tetrahydrofolate dehy 98.0 0.00025 5.4E-09 72.5 16.9 213 241-502 91-344 (345)
64 COG2084 MmsB 3-hydroxyisobutyr 98.0 8.4E-06 1.8E-10 81.7 5.5 109 370-484 2-117 (286)
65 PRK14170 bifunctional 5,10-met 98.0 0.00027 5.9E-09 70.8 15.7 201 259-502 54-281 (284)
66 PRK14168 bifunctional 5,10-met 97.9 0.00037 7.9E-09 70.3 16.2 202 258-503 55-296 (297)
67 PRK14172 bifunctional 5,10-met 97.9 0.00019 4.1E-09 71.7 13.8 161 259-467 55-233 (278)
68 PRK14169 bifunctional 5,10-met 97.9 0.00049 1.1E-08 68.9 16.7 198 258-499 52-277 (282)
69 PF00670 AdoHcyase_NAD: S-aden 97.9 5E-05 1.1E-09 69.6 8.6 98 363-472 18-118 (162)
70 PLN02616 tetrahydrofolate dehy 97.9 0.0006 1.3E-08 70.1 17.3 197 259-503 126-362 (364)
71 PRK14171 bifunctional 5,10-met 97.9 0.00023 4.9E-09 71.4 13.5 166 258-467 54-234 (288)
72 PRK14184 bifunctional 5,10-met 97.9 0.00055 1.2E-08 68.7 16.2 209 241-499 36-281 (286)
73 PRK06046 alanine dehydrogenase 97.9 4.6E-05 9.9E-10 78.6 8.8 113 368-488 129-248 (326)
74 PLN02516 methylenetetrahydrofo 97.9 0.0006 1.3E-08 68.8 16.3 197 259-503 62-298 (299)
75 PRK14183 bifunctional 5,10-met 97.9 0.00022 4.8E-09 71.3 13.0 167 258-467 53-232 (281)
76 PRK14177 bifunctional 5,10-met 97.8 0.00022 4.7E-09 71.4 12.8 197 258-498 55-275 (284)
77 PRK06407 ornithine cyclodeamin 97.8 4.5E-05 9.7E-10 77.7 7.8 94 368-468 117-217 (301)
78 PRK14173 bifunctional 5,10-met 97.8 0.00021 4.6E-09 71.7 12.4 161 259-467 52-230 (287)
79 PRK14187 bifunctional 5,10-met 97.8 0.00036 7.8E-09 70.2 13.6 178 241-467 37-235 (294)
80 PRK14193 bifunctional 5,10-met 97.8 0.0005 1.1E-08 69.0 14.3 161 259-467 55-235 (284)
81 PRK14166 bifunctional 5,10-met 97.8 0.0002 4.4E-09 71.6 11.5 183 241-467 35-232 (282)
82 PRK14186 bifunctional 5,10-met 97.8 0.00032 7E-09 70.7 12.9 199 259-500 55-284 (297)
83 TIGR02371 ala_DH_arch alanine 97.8 0.0001 2.2E-09 76.0 9.2 94 368-468 128-227 (325)
84 PRK06823 ornithine cyclodeamin 97.8 7.8E-05 1.7E-09 76.4 8.3 94 368-468 128-227 (315)
85 PRK14185 bifunctional 5,10-met 97.8 0.00051 1.1E-08 69.1 13.9 167 258-467 53-236 (293)
86 KOG0409 Predicted dehydrogenas 97.7 6.8E-05 1.5E-09 74.5 7.3 113 367-485 34-153 (327)
87 PF02423 OCD_Mu_crystall: Orni 97.7 6.5E-05 1.4E-09 77.0 7.3 96 368-469 128-230 (313)
88 PF02826 2-Hacid_dh_C: D-isome 97.7 4.1E-05 8.9E-10 71.9 5.3 111 363-481 31-145 (178)
89 COG0190 FolD 5,10-methylene-te 97.7 0.001 2.2E-08 66.1 15.2 217 241-503 35-281 (283)
90 TIGR00872 gnd_rel 6-phosphoglu 97.7 4.4E-05 9.6E-10 77.7 5.9 112 370-484 2-115 (298)
91 COG0287 TyrA Prephenate dehydr 97.7 4.1E-05 8.9E-10 76.9 5.2 117 369-490 4-125 (279)
92 PRK14181 bifunctional 5,10-met 97.7 0.0004 8.6E-09 69.7 11.9 183 241-467 31-232 (287)
93 PF02882 THF_DHG_CYH_C: Tetrah 97.7 0.00032 7E-09 64.6 10.1 81 363-468 31-112 (160)
94 cd05291 HicDH_like L-2-hydroxy 97.7 0.00011 2.3E-09 75.2 7.4 73 369-443 1-83 (306)
95 PRK06199 ornithine cyclodeamin 97.6 9.8E-05 2.1E-09 77.5 7.2 114 330-461 132-256 (379)
96 PRK09599 6-phosphogluconate de 97.6 8.6E-05 1.9E-09 75.7 6.5 110 370-484 2-116 (301)
97 PRK07589 ornithine cyclodeamin 97.6 0.00018 3.8E-09 74.6 8.6 96 368-469 129-231 (346)
98 TIGR01505 tartro_sem_red 2-hyd 97.6 8.3E-05 1.8E-09 75.3 6.1 111 370-486 1-117 (291)
99 PRK14174 bifunctional 5,10-met 97.6 0.0014 3.1E-08 66.2 14.3 178 241-467 36-238 (295)
100 COG0300 DltE Short-chain dehyd 97.6 0.00023 5.1E-09 70.6 8.6 77 366-442 4-98 (265)
101 PRK14167 bifunctional 5,10-met 97.6 0.0007 1.5E-08 68.3 12.0 203 258-504 53-292 (297)
102 PRK15461 NADH-dependent gamma- 97.6 0.00014 3.1E-09 73.9 7.1 107 370-482 3-115 (296)
103 PF07991 IlvN: Acetohydroxy ac 97.6 8.5E-05 1.8E-09 67.9 4.8 69 366-438 2-70 (165)
104 PRK13243 glyoxylate reductase; 97.6 0.00015 3.3E-09 75.0 7.1 70 364-439 146-215 (333)
105 PRK07502 cyclohexadienyl dehyd 97.6 8.7E-05 1.9E-09 75.8 5.3 116 369-490 7-127 (307)
106 PLN02928 oxidoreductase family 97.6 0.00017 3.6E-09 75.1 7.4 74 365-439 156-237 (347)
107 PTZ00075 Adenosylhomocysteinas 97.5 0.00044 9.4E-09 73.9 10.3 92 363-466 249-343 (476)
108 PRK05476 S-adenosyl-L-homocyst 97.5 0.00024 5.2E-09 75.4 8.4 91 364-466 208-301 (425)
109 PRK00141 murD UDP-N-acetylmura 97.5 0.00047 1E-08 74.8 10.8 48 365-412 12-59 (473)
110 PLN02350 phosphogluconate dehy 97.5 0.00022 4.8E-09 77.2 8.0 110 369-482 7-127 (493)
111 TIGR00561 pntA NAD(P) transhyd 97.5 0.00039 8.5E-09 75.2 9.7 99 366-468 162-288 (511)
112 COG2423 Predicted ornithine cy 97.5 0.00039 8.4E-09 71.4 9.2 138 329-488 106-251 (330)
113 TIGR02356 adenyl_thiF thiazole 97.5 0.00015 3.3E-09 69.6 5.8 71 366-437 19-120 (202)
114 PRK11559 garR tartronate semia 97.5 0.00018 3.9E-09 73.0 6.6 111 369-485 3-119 (296)
115 PRK12490 6-phosphogluconate de 97.5 0.00014 3E-09 74.1 5.8 111 370-485 2-117 (299)
116 PRK06718 precorrin-2 dehydroge 97.5 0.00023 5E-09 68.3 6.9 74 364-438 6-80 (202)
117 cd05212 NAD_bind_m-THF_DH_Cycl 97.5 0.00084 1.8E-08 60.5 10.1 80 363-467 23-103 (140)
118 PRK13302 putative L-aspartate 97.4 0.00033 7.1E-09 70.4 6.7 108 368-484 6-120 (271)
119 PRK08655 prephenate dehydrogen 97.4 9.8E-05 2.1E-09 79.2 3.0 113 370-489 2-118 (437)
120 PRK14106 murD UDP-N-acetylmura 97.4 0.0011 2.5E-08 71.2 11.2 44 366-409 3-47 (450)
121 PRK08328 hypothetical protein; 97.3 0.00025 5.4E-09 69.5 5.1 43 366-408 25-68 (231)
122 cd01079 NAD_bind_m-THF_DH NAD 97.3 0.00048 1.1E-08 65.0 6.7 127 364-500 58-194 (197)
123 cd00401 AdoHcyase S-adenosyl-L 97.3 0.00049 1.1E-08 72.9 7.4 70 363-437 197-266 (413)
124 PRK03369 murD UDP-N-acetylmura 97.3 0.0011 2.5E-08 72.1 10.5 96 366-491 10-105 (488)
125 PRK05479 ketol-acid reductoiso 97.3 0.00041 8.8E-09 71.2 6.6 72 364-439 13-84 (330)
126 PRK01438 murD UDP-N-acetylmura 97.3 0.002 4.3E-08 70.0 12.2 38 364-401 12-49 (480)
127 PRK08762 molybdopterin biosynt 97.3 0.00029 6.3E-09 74.2 5.4 71 366-437 133-234 (376)
128 TIGR00873 gnd 6-phosphoglucona 97.3 0.00025 5.5E-09 76.4 5.0 109 371-483 2-119 (467)
129 PLN02256 arogenate dehydrogena 97.3 0.00034 7.3E-09 71.4 5.7 118 366-490 34-154 (304)
130 PRK07417 arogenate dehydrogena 97.3 0.00036 7.8E-09 70.4 5.7 114 370-490 2-115 (279)
131 PLN02494 adenosylhomocysteinas 97.3 0.00067 1.5E-08 72.4 7.5 70 363-437 249-318 (477)
132 PRK09424 pntA NAD(P) transhydr 97.2 0.0011 2.4E-08 72.0 9.2 98 366-466 163-287 (509)
133 PRK07679 pyrroline-5-carboxyla 97.2 0.00037 8.1E-09 70.2 5.3 129 369-503 4-137 (279)
134 PRK02472 murD UDP-N-acetylmura 97.2 0.0013 2.8E-08 70.7 9.7 39 366-404 3-41 (447)
135 PRK12475 thiamine/molybdopteri 97.2 0.00052 1.1E-08 71.1 6.2 72 365-437 21-125 (338)
136 PRK06476 pyrroline-5-carboxyla 97.2 0.00055 1.2E-08 68.1 5.8 101 370-478 2-106 (258)
137 KOG3007 Mu-crystallin [Amino a 97.2 0.0018 3.9E-08 63.3 8.8 116 369-492 139-266 (333)
138 cd01076 NAD_bind_1_Glu_DH NAD( 97.2 0.0064 1.4E-07 59.4 12.8 135 338-490 10-162 (227)
139 PTZ00142 6-phosphogluconate de 97.2 0.00048 1E-08 74.3 5.3 111 370-483 3-122 (470)
140 PRK06719 precorrin-2 dehydroge 97.1 0.00092 2E-08 61.5 6.4 72 364-438 9-80 (157)
141 COG4221 Short-chain alcohol de 97.1 0.0012 2.7E-08 64.2 7.3 72 366-438 4-91 (246)
142 TIGR00936 ahcY adenosylhomocys 97.1 0.00094 2E-08 70.5 7.1 69 364-437 191-259 (406)
143 PF01210 NAD_Gly3P_dh_N: NAD-d 97.1 0.00075 1.6E-08 62.0 5.7 69 370-439 1-80 (157)
144 PRK13403 ketol-acid reductoiso 97.1 0.00079 1.7E-08 68.5 6.2 70 364-438 12-81 (335)
145 PRK07634 pyrroline-5-carboxyla 97.1 0.00094 2E-08 65.7 6.5 70 368-440 4-78 (245)
146 COG2085 Predicted dinucleotide 97.1 0.00086 1.9E-08 63.9 5.7 90 369-467 2-95 (211)
147 PRK12480 D-lactate dehydrogena 97.1 0.0007 1.5E-08 69.9 5.4 116 364-490 142-261 (330)
148 PRK06545 prephenate dehydrogen 97.1 0.00055 1.2E-08 71.6 4.5 117 369-490 1-122 (359)
149 PRK15059 tartronate semialdehy 97.1 0.00086 1.9E-08 68.1 5.7 109 370-485 2-116 (292)
150 PRK08644 thiamine biosynthesis 97.0 0.001 2.2E-08 64.4 5.9 71 365-436 25-125 (212)
151 PRK06436 glycerate dehydrogena 97.0 0.0017 3.6E-08 66.3 7.7 67 364-439 118-184 (303)
152 TIGR01692 HIBADH 3-hydroxyisob 97.0 0.00075 1.6E-08 68.3 5.2 107 373-485 1-113 (288)
153 PLN02712 arogenate dehydrogena 97.0 0.00053 1.2E-08 77.2 4.4 115 364-485 365-482 (667)
154 PRK08605 D-lactate dehydrogena 97.0 0.00096 2.1E-08 69.0 5.9 117 364-490 142-263 (332)
155 PF10727 Rossmann-like: Rossma 97.0 0.0007 1.5E-08 59.9 4.1 107 368-483 10-122 (127)
156 PRK05872 short chain dehydroge 97.0 0.0019 4.1E-08 65.5 7.9 76 364-439 5-96 (296)
157 PRK13304 L-aspartate dehydroge 97.0 0.001 2.2E-08 66.6 5.7 105 370-482 3-115 (265)
158 PRK14618 NAD(P)H-dependent gly 97.0 0.0015 3.4E-08 67.3 6.9 90 369-465 5-105 (328)
159 PRK12491 pyrroline-5-carboxyla 97.0 0.0014 3E-08 65.9 6.3 119 369-495 3-130 (272)
160 PF02737 3HCDH_N: 3-hydroxyacy 97.0 0.0021 4.5E-08 60.5 7.1 39 370-408 1-39 (180)
161 KOG4230 C1-tetrahydrofolate sy 97.0 0.012 2.7E-07 63.0 13.3 185 244-470 42-242 (935)
162 PRK07688 thiamine/molybdopteri 96.9 0.0013 2.9E-08 68.1 6.1 36 366-401 22-58 (339)
163 PRK15469 ghrA bifunctional gly 96.9 0.0007 1.5E-08 69.4 3.9 69 364-438 132-200 (312)
164 PLN02712 arogenate dehydrogena 96.9 0.0011 2.4E-08 74.7 5.7 117 367-490 51-170 (667)
165 PRK05597 molybdopterin biosynt 96.9 0.0012 2.6E-08 68.9 5.6 71 366-437 26-127 (355)
166 cd01487 E1_ThiF_like E1_ThiF_l 96.9 0.0017 3.8E-08 60.7 6.0 32 370-401 1-33 (174)
167 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.019 4.2E-07 55.6 13.4 149 339-502 3-165 (217)
168 TIGR02354 thiF_fam2 thiamine b 96.9 0.0017 3.6E-08 62.3 5.9 36 365-400 18-54 (200)
169 PF13241 NAD_binding_7: Putati 96.9 0.0018 3.8E-08 55.2 5.5 67 364-437 3-69 (103)
170 COG0345 ProC Pyrroline-5-carbo 96.9 0.0019 4.2E-08 64.3 6.5 67 369-438 2-72 (266)
171 PRK07574 formate dehydrogenase 96.9 0.0012 2.6E-08 69.4 5.2 71 364-438 188-258 (385)
172 PRK09260 3-hydroxybutyryl-CoA 96.9 0.0016 3.6E-08 65.8 5.8 41 369-409 2-42 (288)
173 PRK05866 short chain dehydroge 96.8 0.0028 6E-08 64.3 7.4 49 363-411 35-84 (293)
174 PLN03139 formate dehydrogenase 96.8 0.0014 3.1E-08 68.8 5.0 140 364-507 195-370 (386)
175 PRK08507 prephenate dehydrogen 96.8 0.0018 3.8E-08 65.1 5.5 111 370-489 2-115 (275)
176 PRK05600 thiamine biosynthesis 96.8 0.002 4.3E-08 67.6 5.9 71 366-437 39-140 (370)
177 COG0686 Ald Alanine dehydrogen 96.8 0.0028 6.2E-08 63.4 6.5 98 366-466 166-270 (371)
178 PRK07060 short chain dehydroge 96.8 0.0049 1.1E-07 60.0 8.2 76 364-439 5-88 (245)
179 PRK06200 2,3-dihydroxy-2,3-dih 96.8 0.0047 1E-07 61.1 8.2 73 366-438 4-90 (263)
180 PRK08410 2-hydroxyacid dehydro 96.8 0.003 6.6E-08 64.7 6.9 67 364-439 141-207 (311)
181 TIGR01470 cysG_Nterm siroheme 96.7 0.003 6.5E-08 60.8 6.4 72 364-438 5-79 (205)
182 PRK06139 short chain dehydroge 96.7 0.0042 9E-08 64.2 7.9 75 366-440 5-96 (330)
183 PRK15438 erythronate-4-phospha 96.7 0.0037 8E-08 65.6 7.4 134 363-505 111-281 (378)
184 KOG1201 Hydroxysteroid 17-beta 96.7 0.0027 5.8E-08 63.5 5.9 74 364-438 34-124 (300)
185 TIGR00465 ilvC ketol-acid redu 96.7 0.0028 6E-08 65.0 6.2 69 366-439 1-70 (314)
186 PRK08818 prephenate dehydrogen 96.7 0.001 2.3E-08 69.5 3.1 106 367-490 3-112 (370)
187 PRK00094 gpsA NAD(P)H-dependen 96.7 0.003 6.6E-08 64.7 6.5 92 370-464 3-105 (325)
188 COG1052 LdhA Lactate dehydroge 96.7 0.0028 6.2E-08 65.1 6.2 138 364-507 142-318 (324)
189 PRK06196 oxidoreductase; Provi 96.7 0.0062 1.3E-07 62.2 8.7 76 364-439 22-110 (315)
190 PRK07231 fabG 3-ketoacyl-(acyl 96.7 0.0046 1E-07 60.3 7.4 47 366-412 3-50 (251)
191 PRK00257 erythronate-4-phospha 96.7 0.0033 7.2E-08 66.0 6.6 134 363-506 111-282 (381)
192 PRK11880 pyrroline-5-carboxyla 96.7 0.0035 7.5E-08 62.6 6.5 68 369-439 3-73 (267)
193 TIGR01915 npdG NADPH-dependent 96.7 0.0034 7.3E-08 60.9 6.2 91 370-464 2-101 (219)
194 KOG1208 Dehydrogenases with di 96.7 0.0058 1.3E-07 62.6 8.1 79 364-442 31-128 (314)
195 TIGR02355 moeB molybdopterin s 96.7 0.003 6.6E-08 62.2 5.9 35 366-400 22-57 (240)
196 PRK13581 D-3-phosphoglycerate 96.7 0.0036 7.8E-08 68.8 7.0 70 364-439 136-205 (526)
197 PRK07530 3-hydroxybutyryl-CoA 96.7 0.0035 7.5E-08 63.6 6.4 40 369-408 5-44 (292)
198 PLN03209 translocon at the inn 96.6 0.0039 8.4E-08 68.4 7.0 46 366-411 78-124 (576)
199 PF00056 Ldh_1_N: lactate/mala 96.6 0.0076 1.6E-07 54.4 7.9 72 370-443 2-84 (141)
200 PRK08293 3-hydroxybutyryl-CoA 96.6 0.0045 9.8E-08 62.6 7.1 40 369-408 4-43 (287)
201 PRK11199 tyrA bifunctional cho 96.6 0.0012 2.7E-08 69.3 3.1 88 368-477 98-186 (374)
202 TIGR03325 BphB_TodD cis-2,3-di 96.6 0.0053 1.2E-07 60.7 7.4 47 366-412 3-50 (262)
203 PRK15409 bifunctional glyoxyla 96.6 0.0042 9.2E-08 63.9 6.8 135 364-504 141-311 (323)
204 PRK15116 sulfur acceptor prote 96.6 0.005 1.1E-07 61.5 7.0 36 365-400 27-63 (268)
205 cd00757 ThiF_MoeB_HesA_family 96.6 0.003 6.5E-08 61.8 5.4 71 366-437 19-120 (228)
206 PRK06057 short chain dehydroge 96.6 0.006 1.3E-07 60.0 7.6 74 365-438 4-89 (255)
207 PRK00421 murC UDP-N-acetylmura 96.6 0.012 2.5E-07 63.7 10.4 96 366-492 5-102 (461)
208 PRK01710 murD UDP-N-acetylmura 96.6 0.0097 2.1E-07 64.3 9.7 36 366-401 12-47 (458)
209 PRK05690 molybdopterin biosynt 96.6 0.0036 7.9E-08 61.9 5.8 35 366-400 30-65 (245)
210 PRK06130 3-hydroxybutyryl-CoA 96.6 0.0049 1.1E-07 63.0 7.0 41 369-409 5-45 (311)
211 TIGR01327 PGDH D-3-phosphoglyc 96.6 0.0053 1.2E-07 67.4 7.7 71 364-439 134-204 (525)
212 COG0569 TrkA K+ transport syst 96.6 0.0056 1.2E-07 59.8 6.9 70 369-438 1-76 (225)
213 KOG1200 Mitochondrial/plastidi 96.6 0.0056 1.2E-07 57.5 6.4 73 366-439 12-101 (256)
214 COG0673 MviM Predicted dehydro 96.5 0.0092 2E-07 61.4 8.9 119 369-497 4-135 (342)
215 cd00755 YgdL_like Family of ac 96.5 0.0042 9E-08 60.9 5.8 35 366-400 9-44 (231)
216 PRK07819 3-hydroxybutyryl-CoA 96.5 0.0059 1.3E-07 61.8 7.0 38 369-406 6-43 (286)
217 PRK06505 enoyl-(acyl carrier p 96.5 0.0091 2E-07 59.7 8.2 74 366-439 5-96 (271)
218 COG0771 MurD UDP-N-acetylmuram 96.5 0.012 2.6E-07 62.9 9.3 37 366-402 5-41 (448)
219 PRK08339 short chain dehydroge 96.5 0.0068 1.5E-07 60.3 7.1 48 364-411 4-52 (263)
220 PLN02688 pyrroline-5-carboxyla 96.5 0.0052 1.1E-07 61.3 6.2 65 370-438 2-71 (266)
221 PRK07680 late competence prote 96.5 0.0044 9.6E-08 62.2 5.7 116 370-491 2-123 (273)
222 PRK06129 3-hydroxyacyl-CoA deh 96.4 0.0079 1.7E-07 61.5 7.5 39 369-407 3-41 (308)
223 TIGR03026 NDP-sugDHase nucleot 96.4 0.013 2.8E-07 62.5 9.2 100 370-470 2-126 (411)
224 PRK08223 hypothetical protein; 96.4 0.0054 1.2E-07 61.7 5.9 35 366-400 25-60 (287)
225 PRK06522 2-dehydropantoate 2-r 96.4 0.009 2E-07 60.5 7.7 66 370-438 2-76 (304)
226 PLN02858 fructose-bisphosphate 96.4 0.0045 9.7E-08 75.0 6.2 107 368-480 4-116 (1378)
227 COG0111 SerA Phosphoglycerate 96.4 0.0062 1.4E-07 62.7 6.4 71 363-438 137-207 (324)
228 KOG1205 Predicted dehydrogenas 96.4 0.0054 1.2E-07 61.5 5.8 77 364-440 8-103 (282)
229 PRK07066 3-hydroxybutyryl-CoA 96.4 0.0075 1.6E-07 62.0 7.0 39 369-407 8-46 (321)
230 PRK08862 short chain dehydroge 96.4 0.0076 1.7E-07 58.7 6.7 46 366-411 3-49 (227)
231 KOG1014 17 beta-hydroxysteroid 96.4 0.0063 1.4E-07 61.2 6.1 45 368-412 49-94 (312)
232 PRK06487 glycerate dehydrogena 96.4 0.0068 1.5E-07 62.3 6.5 63 365-438 145-207 (317)
233 PRK05854 short chain dehydroge 96.4 0.0079 1.7E-07 61.5 6.9 48 364-411 10-58 (313)
234 KOG0172 Lysine-ketoglutarate r 96.3 0.0019 4.1E-08 66.3 2.3 135 368-508 2-162 (445)
235 PRK14619 NAD(P)H-dependent gly 96.3 0.0042 9.2E-08 63.5 4.9 35 368-402 4-38 (308)
236 PRK07523 gluconate 5-dehydroge 96.3 0.0086 1.9E-07 58.9 6.9 48 365-412 7-55 (255)
237 PRK06932 glycerate dehydrogena 96.3 0.0066 1.4E-07 62.3 6.3 65 364-438 143-207 (314)
238 PRK07531 bifunctional 3-hydrox 96.3 0.0079 1.7E-07 65.7 7.1 40 369-408 5-44 (495)
239 PRK05867 short chain dehydroge 96.3 0.0086 1.9E-07 58.8 6.8 47 365-411 6-53 (253)
240 PRK06035 3-hydroxyacyl-CoA deh 96.3 0.0097 2.1E-07 60.3 7.3 39 369-407 4-42 (291)
241 PLN02858 fructose-bisphosphate 96.3 0.0089 1.9E-07 72.5 8.0 108 369-482 325-440 (1378)
242 PRK08415 enoyl-(acyl carrier p 96.3 0.015 3.2E-07 58.4 8.5 73 366-438 3-93 (274)
243 PRK07984 enoyl-(acyl carrier p 96.3 0.015 3.2E-07 57.9 8.2 74 366-439 4-95 (262)
244 PLN02306 hydroxypyruvate reduc 96.3 0.0096 2.1E-07 62.8 7.0 75 364-439 161-247 (386)
245 PRK07533 enoyl-(acyl carrier p 96.2 0.02 4.2E-07 56.7 8.8 49 364-412 6-60 (258)
246 PRK01390 murD UDP-N-acetylmura 96.2 0.029 6.2E-07 60.7 10.8 98 366-491 7-104 (460)
247 PRK04308 murD UDP-N-acetylmura 96.2 0.025 5.3E-07 60.9 10.2 37 366-402 3-39 (445)
248 PRK08159 enoyl-(acyl carrier p 96.2 0.015 3.3E-07 58.1 8.0 74 365-438 7-98 (272)
249 PRK05717 oxidoreductase; Valid 96.2 0.012 2.7E-07 57.8 7.2 77 363-439 5-95 (255)
250 cd04726 KGPDC_HPS 3-Keto-L-gul 96.2 0.1 2.2E-06 49.6 13.3 130 11-159 1-132 (202)
251 COG1064 AdhP Zn-dependent alco 96.2 0.013 2.8E-07 60.2 7.4 69 367-437 166-238 (339)
252 PRK12367 short chain dehydroge 96.2 0.008 1.7E-07 59.3 5.7 74 364-439 10-90 (245)
253 PRK08265 short chain dehydroge 96.2 0.012 2.5E-07 58.3 6.8 47 366-412 4-51 (261)
254 PRK00066 ldh L-lactate dehydro 96.2 0.015 3.2E-07 59.8 7.6 74 367-442 5-87 (315)
255 PRK12742 oxidoreductase; Provi 96.1 0.018 4E-07 55.6 8.0 74 366-439 4-86 (237)
256 PRK07063 short chain dehydroge 96.1 0.013 2.7E-07 57.8 6.9 48 365-412 4-52 (260)
257 PRK07424 bifunctional sterol d 96.1 0.011 2.3E-07 62.8 6.7 74 365-439 175-256 (406)
258 PRK08277 D-mannonate oxidoredu 96.1 0.013 2.8E-07 58.5 7.0 48 364-411 6-54 (278)
259 COG1648 CysG Siroheme synthase 96.1 0.017 3.6E-07 55.7 7.4 150 364-516 8-179 (210)
260 PF01408 GFO_IDH_MocA: Oxidore 96.1 0.0084 1.8E-07 51.9 4.8 105 370-484 2-117 (120)
261 PRK08085 gluconate 5-dehydroge 96.1 0.013 2.8E-07 57.5 6.8 47 365-411 6-53 (254)
262 PF13460 NAD_binding_10: NADH( 96.1 0.0043 9.4E-08 57.7 3.2 65 371-439 1-71 (183)
263 PRK12829 short chain dehydroge 96.1 0.019 4.1E-07 56.5 7.9 48 365-412 8-56 (264)
264 PRK06182 short chain dehydroge 96.1 0.0096 2.1E-07 59.3 5.8 71 368-439 3-85 (273)
265 PLN02780 ketoreductase/ oxidor 96.1 0.011 2.5E-07 60.7 6.4 45 367-411 52-97 (320)
266 PRK04690 murD UDP-N-acetylmura 96.1 0.036 7.8E-07 60.1 10.6 34 366-399 6-39 (468)
267 PRK06949 short chain dehydroge 96.1 0.017 3.6E-07 56.7 7.3 48 364-411 5-53 (258)
268 PRK07478 short chain dehydroge 96.1 0.015 3.2E-07 57.2 6.9 46 366-411 4-50 (254)
269 PF00208 ELFV_dehydrog: Glutam 96.1 0.073 1.6E-06 52.6 11.7 134 339-488 11-171 (244)
270 KOG0725 Reductases with broad 96.0 0.016 3.4E-07 58.2 7.1 49 364-412 4-53 (270)
271 cd08230 glucose_DH Glucose deh 96.0 0.02 4.3E-07 59.4 8.1 71 367-438 172-248 (355)
272 PRK07889 enoyl-(acyl carrier p 96.0 0.019 4.1E-07 56.8 7.5 74 366-439 5-96 (256)
273 PRK11064 wecC UDP-N-acetyl-D-m 96.0 0.029 6.3E-07 59.9 9.4 100 369-469 4-124 (415)
274 PRK08703 short chain dehydroge 96.0 0.016 3.5E-07 56.3 7.0 47 365-411 3-50 (239)
275 PRK07825 short chain dehydroge 96.0 0.016 3.5E-07 57.6 7.0 74 366-439 3-89 (273)
276 PRK09242 tropinone reductase; 96.0 0.018 3.9E-07 56.7 7.2 48 364-411 5-53 (257)
277 PLN02545 3-hydroxybutyryl-CoA 96.0 0.017 3.6E-07 58.7 6.9 38 369-406 5-42 (295)
278 PRK09186 flagellin modificatio 96.0 0.016 3.5E-07 56.7 6.7 46 366-411 2-48 (256)
279 PRK09291 short chain dehydroge 95.9 0.021 4.5E-07 56.0 7.4 72 368-439 2-84 (257)
280 PRK06180 short chain dehydroge 95.9 0.03 6.5E-07 55.9 8.6 72 368-439 4-89 (277)
281 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.9 0.017 3.7E-07 63.1 7.2 39 369-407 6-44 (503)
282 PRK06603 enoyl-(acyl carrier p 95.9 0.027 5.8E-07 55.9 8.1 73 366-438 6-96 (260)
283 cd01492 Aos1_SUMO Ubiquitin ac 95.9 0.015 3.3E-07 55.5 6.0 35 366-400 19-54 (197)
284 PRK06124 gluconate 5-dehydroge 95.9 0.02 4.3E-07 56.2 7.1 48 364-411 7-55 (256)
285 PRK12936 3-ketoacyl-(acyl-carr 95.9 0.03 6.6E-07 54.3 8.3 74 366-439 4-91 (245)
286 PF02254 TrkA_N: TrkA-N domain 95.9 0.022 4.7E-07 49.0 6.4 67 371-437 1-71 (116)
287 PRK07774 short chain dehydroge 95.9 0.019 4.2E-07 56.0 6.9 46 366-411 4-50 (250)
288 cd05292 LDH_2 A subgroup of L- 95.9 0.025 5.5E-07 57.9 8.0 72 370-443 2-82 (308)
289 PRK07062 short chain dehydroge 95.9 0.019 4.1E-07 56.7 6.8 47 365-411 5-52 (265)
290 PRK06125 short chain dehydroge 95.9 0.02 4.3E-07 56.4 6.9 47 365-411 4-51 (259)
291 KOG1207 Diacetyl reductase/L-x 95.9 0.02 4.3E-07 52.9 6.1 49 365-413 4-53 (245)
292 KOG0069 Glyoxylate/hydroxypyru 95.9 0.013 2.9E-07 60.0 5.7 120 363-490 157-280 (336)
293 PRK06172 short chain dehydroge 95.9 0.02 4.4E-07 56.0 6.9 47 365-411 4-51 (253)
294 PRK02006 murD UDP-N-acetylmura 95.8 0.046 1E-06 59.8 10.2 36 366-401 5-40 (498)
295 PRK09880 L-idonate 5-dehydroge 95.8 0.028 6.2E-07 58.0 8.0 93 367-465 169-267 (343)
296 PRK07890 short chain dehydroge 95.8 0.021 4.6E-07 55.9 6.8 47 366-412 3-50 (258)
297 COG0499 SAM1 S-adenosylhomocys 95.8 0.019 4.2E-07 58.6 6.3 70 363-437 204-273 (420)
298 PRK07370 enoyl-(acyl carrier p 95.8 0.027 6E-07 55.7 7.4 35 366-400 4-41 (258)
299 PRK09496 trkA potassium transp 95.8 0.023 5.1E-07 61.0 7.4 69 370-438 2-75 (453)
300 PRK06484 short chain dehydroge 95.8 0.028 6.1E-07 61.5 8.1 74 365-438 266-353 (520)
301 PRK07814 short chain dehydroge 95.8 0.025 5.5E-07 55.9 7.2 48 364-411 6-54 (263)
302 TIGR01832 kduD 2-deoxy-D-gluco 95.8 0.037 8.1E-07 53.9 8.3 36 366-401 3-39 (248)
303 PRK08589 short chain dehydroge 95.7 0.023 5E-07 56.7 6.8 45 366-411 4-49 (272)
304 PRK08690 enoyl-(acyl carrier p 95.7 0.025 5.5E-07 56.1 7.1 74 366-439 4-95 (261)
305 PRK07035 short chain dehydroge 95.7 0.026 5.6E-07 55.3 7.0 48 364-411 4-52 (252)
306 PRK12921 2-dehydropantoate 2-r 95.7 0.021 4.6E-07 57.9 6.5 67 370-439 2-79 (305)
307 PRK01368 murD UDP-N-acetylmura 95.7 0.053 1.2E-06 58.6 9.8 35 367-402 5-39 (454)
308 PRK08268 3-hydroxy-acyl-CoA de 95.7 0.024 5.1E-07 62.1 7.1 39 369-407 8-46 (507)
309 PLN00141 Tic62-NAD(P)-related 95.7 0.016 3.4E-07 57.2 5.3 75 364-439 13-96 (251)
310 PRK06197 short chain dehydroge 95.7 0.023 5E-07 57.7 6.7 47 365-411 13-60 (306)
311 PRK11790 D-3-phosphoglycerate 95.7 0.021 4.6E-07 60.8 6.5 38 364-401 147-184 (409)
312 PF00106 adh_short: short chai 95.6 0.029 6.3E-07 51.1 6.6 44 369-412 1-48 (167)
313 PRK06720 hypothetical protein; 95.6 0.031 6.8E-07 52.0 6.8 48 364-411 12-60 (169)
314 PRK12481 2-deoxy-D-gluconate 3 95.6 0.035 7.6E-07 54.6 7.6 37 365-401 5-42 (251)
315 PTZ00082 L-lactate dehydrogena 95.6 0.032 7E-07 57.4 7.6 75 367-443 5-89 (321)
316 PRK03803 murD UDP-N-acetylmura 95.6 0.059 1.3E-06 58.0 9.9 34 368-401 6-39 (448)
317 PRK07453 protochlorophyllide o 95.6 0.027 5.9E-07 57.6 7.0 47 366-412 4-51 (322)
318 PRK05876 short chain dehydroge 95.6 0.028 6.1E-07 56.3 6.9 46 366-411 4-50 (275)
319 PRK07109 short chain dehydroge 95.6 0.028 6.2E-07 58.1 7.0 47 365-411 5-52 (334)
320 PRK07067 sorbitol dehydrogenas 95.6 0.028 6E-07 55.3 6.7 47 366-412 4-51 (257)
321 PRK06997 enoyl-(acyl carrier p 95.6 0.036 7.9E-07 54.9 7.5 73 366-438 4-94 (260)
322 KOG0024 Sorbitol dehydrogenase 95.6 0.025 5.5E-07 57.2 6.2 73 367-440 169-254 (354)
323 PRK02705 murD UDP-N-acetylmura 95.6 0.078 1.7E-06 57.2 10.6 32 370-401 2-33 (459)
324 PRK07097 gluconate 5-dehydroge 95.6 0.032 6.9E-07 55.3 7.0 48 364-411 6-54 (265)
325 PRK06194 hypothetical protein; 95.5 0.03 6.6E-07 56.0 6.9 46 366-411 4-50 (287)
326 COG0334 GdhA Glutamate dehydro 95.5 0.12 2.5E-06 54.3 11.2 132 364-507 203-364 (411)
327 PRK06153 hypothetical protein; 95.5 0.027 5.8E-07 58.8 6.5 34 366-399 174-208 (393)
328 PRK14620 NAD(P)H-dependent gly 95.5 0.025 5.5E-07 58.2 6.4 70 370-439 2-82 (326)
329 PRK07878 molybdopterin biosynt 95.5 0.018 4E-07 60.9 5.4 35 366-400 40-75 (392)
330 PRK06484 short chain dehydroge 95.5 0.03 6.4E-07 61.3 7.2 73 366-438 3-89 (520)
331 PRK07411 hypothetical protein; 95.5 0.018 4E-07 60.8 5.4 35 366-400 36-71 (390)
332 PRK08217 fabG 3-ketoacyl-(acyl 95.5 0.033 7.1E-07 54.2 6.8 46 366-411 3-49 (253)
333 PRK06500 short chain dehydroge 95.5 0.031 6.8E-07 54.4 6.6 73 366-438 4-90 (249)
334 PRK13394 3-hydroxybutyrate deh 95.5 0.033 7.3E-07 54.6 6.8 46 366-411 5-51 (262)
335 PRK09287 6-phosphogluconate de 95.5 0.011 2.5E-07 63.6 3.7 101 379-483 1-110 (459)
336 cd00958 DhnA Class I fructose- 95.5 0.49 1.1E-05 46.3 15.0 152 19-186 20-185 (235)
337 COG0059 IlvC Ketol-acid reduct 95.5 0.023 4.9E-07 57.0 5.4 72 365-440 15-86 (338)
338 PRK07831 short chain dehydroge 95.5 0.033 7.1E-07 55.0 6.7 47 365-411 14-62 (262)
339 PLN02253 xanthoxin dehydrogena 95.5 0.034 7.3E-07 55.5 6.8 48 365-412 15-63 (280)
340 PRK14806 bifunctional cyclohex 95.5 0.031 6.8E-07 64.0 7.4 116 369-490 4-125 (735)
341 PRK06138 short chain dehydroge 95.5 0.033 7.2E-07 54.3 6.7 46 366-411 3-49 (252)
342 PLN02477 glutamate dehydrogena 95.5 0.18 3.9E-06 53.5 12.5 129 338-487 185-334 (410)
343 TIGR03589 PseB UDP-N-acetylglu 95.4 0.035 7.6E-07 57.0 7.1 72 366-438 2-84 (324)
344 PRK06079 enoyl-(acyl carrier p 95.4 0.03 6.5E-07 55.2 6.3 45 366-411 5-52 (252)
345 PRK09496 trkA potassium transp 95.4 0.046 1E-06 58.7 8.2 73 366-438 229-307 (453)
346 PRK07677 short chain dehydroge 95.4 0.033 7.2E-07 54.6 6.6 44 368-411 1-45 (252)
347 PRK08324 short chain dehydroge 95.4 0.03 6.5E-07 63.7 7.0 50 364-413 418-468 (681)
348 PRK15057 UDP-glucose 6-dehydro 95.4 0.067 1.5E-06 56.6 9.1 99 370-470 2-123 (388)
349 PRK07326 short chain dehydroge 95.4 0.037 8.1E-07 53.5 6.7 47 366-412 4-51 (237)
350 PRK12939 short chain dehydroge 95.4 0.04 8.7E-07 53.6 6.9 46 366-411 5-51 (250)
351 PRK09414 glutamate dehydrogena 95.4 0.18 3.9E-06 54.0 12.2 134 337-488 210-368 (445)
352 PRK05786 fabG 3-ketoacyl-(acyl 95.4 0.04 8.6E-07 53.3 6.8 46 366-411 3-49 (238)
353 PRK06935 2-deoxy-D-gluconate 3 95.4 0.035 7.6E-07 54.6 6.5 47 364-411 11-58 (258)
354 PRK08945 putative oxoacyl-(acy 95.4 0.037 8.1E-07 54.0 6.6 47 365-411 9-56 (247)
355 PRK05875 short chain dehydroge 95.3 0.04 8.7E-07 54.8 6.9 47 365-411 4-51 (276)
356 TIGR03128 RuMP_HxlA 3-hexulose 95.3 0.19 4.1E-06 48.1 11.3 131 12-160 1-133 (206)
357 PRK09072 short chain dehydroge 95.3 0.042 9.1E-07 54.3 7.0 46 366-411 3-49 (263)
358 PRK05693 short chain dehydroge 95.3 0.038 8.2E-07 55.0 6.7 70 369-439 2-83 (274)
359 TIGR01761 thiaz-red thiazoliny 95.3 0.08 1.7E-06 55.0 9.1 108 369-486 4-121 (343)
360 PRK06483 dihydromonapterin red 95.3 0.045 9.7E-07 53.1 6.9 38 368-405 2-40 (236)
361 PRK07576 short chain dehydroge 95.3 0.043 9.3E-07 54.4 6.9 47 365-411 6-53 (264)
362 PRK08643 acetoin reductase; Va 95.3 0.04 8.6E-07 54.1 6.6 45 368-412 2-47 (256)
363 PRK07454 short chain dehydroge 95.3 0.043 9.2E-07 53.3 6.7 45 367-411 5-50 (241)
364 PRK05993 short chain dehydroge 95.3 0.036 7.8E-07 55.4 6.3 42 368-409 4-46 (277)
365 cd00300 LDH_like L-lactate deh 95.3 0.039 8.5E-07 56.2 6.6 70 371-442 1-80 (300)
366 TIGR01108 oadA oxaloacetate de 95.2 1.9 4.1E-05 48.1 20.1 209 17-231 18-246 (582)
367 PRK07201 short chain dehydroge 95.2 0.036 7.9E-07 62.4 6.9 47 365-411 368-415 (657)
368 PRK06113 7-alpha-hydroxysteroi 95.2 0.051 1.1E-06 53.4 7.1 48 364-411 7-55 (255)
369 PRK08594 enoyl-(acyl carrier p 95.2 0.039 8.6E-07 54.6 6.4 47 365-411 4-56 (257)
370 PRK05579 bifunctional phosphop 95.2 0.078 1.7E-06 56.2 8.9 117 334-468 165-306 (399)
371 cd04740 DHOD_1B_like Dihydroor 95.2 0.51 1.1E-05 47.9 14.6 84 12-104 91-185 (296)
372 PRK05808 3-hydroxybutyryl-CoA 95.2 0.044 9.5E-07 55.2 6.7 37 369-405 4-40 (282)
373 cd05293 LDH_1 A subgroup of L- 95.2 0.051 1.1E-06 55.8 7.2 72 369-442 4-85 (312)
374 PRK07666 fabG 3-ketoacyl-(acyl 95.2 0.051 1.1E-06 52.7 6.9 46 366-411 5-51 (239)
375 TIGR03206 benzo_BadH 2-hydroxy 95.2 0.047 1E-06 53.2 6.7 45 367-411 2-47 (250)
376 PRK08416 7-alpha-hydroxysteroi 95.2 0.045 9.7E-07 54.1 6.6 47 365-411 5-53 (260)
377 PF01118 Semialdhyde_dh: Semia 95.2 0.0044 9.6E-08 54.3 -0.6 92 370-466 1-99 (121)
378 PRK12828 short chain dehydroge 95.2 0.047 1E-06 52.5 6.6 46 366-411 5-51 (239)
379 PRK09140 2-dehydro-3-deoxy-6-p 95.1 0.71 1.5E-05 44.4 14.5 120 12-159 11-130 (206)
380 COG1179 Dinucleotide-utilizing 95.1 0.036 7.7E-07 53.9 5.4 33 366-398 28-61 (263)
381 PRK08213 gluconate 5-dehydroge 95.1 0.053 1.2E-06 53.3 6.9 48 364-411 8-56 (259)
382 COG3967 DltE Short-chain dehyd 95.1 0.069 1.5E-06 50.8 7.1 73 366-438 3-88 (245)
383 PRK05884 short chain dehydroge 95.1 0.046 1E-06 52.9 6.3 69 370-438 2-79 (223)
384 PRK06101 short chain dehydroge 95.1 0.046 1E-06 53.3 6.3 42 369-410 2-44 (240)
385 PRK12429 3-hydroxybutyrate deh 95.1 0.055 1.2E-06 52.9 6.9 46 366-411 2-48 (258)
386 PRK12826 3-ketoacyl-(acyl-carr 95.1 0.052 1.1E-06 52.7 6.7 46 366-411 4-50 (251)
387 PRK08267 short chain dehydroge 95.1 0.048 1E-06 53.7 6.4 44 369-412 2-46 (260)
388 PRK08251 short chain dehydroge 95.1 0.054 1.2E-06 52.8 6.7 44 368-411 2-46 (248)
389 PRK08177 short chain dehydroge 95.1 0.071 1.5E-06 51.3 7.5 71 369-439 2-82 (225)
390 PF02558 ApbA: Ketopantoate re 95.1 0.044 9.4E-07 49.5 5.6 38 371-409 1-38 (151)
391 PRK07024 short chain dehydroge 95.1 0.049 1.1E-06 53.6 6.4 45 368-412 2-47 (257)
392 cd05313 NAD_bind_2_Glu_DH NAD( 95.0 0.32 7E-06 48.3 12.1 129 338-487 17-177 (254)
393 TIGR01082 murC UDP-N-acetylmur 95.0 0.1 2.3E-06 56.2 9.5 33 370-402 1-34 (448)
394 PRK08303 short chain dehydroge 95.0 0.049 1.1E-06 55.6 6.5 37 365-401 5-42 (305)
395 PRK05562 precorrin-2 dehydroge 95.0 0.05 1.1E-06 52.9 6.1 71 364-437 21-94 (223)
396 PRK06940 short chain dehydroge 95.0 0.051 1.1E-06 54.4 6.4 43 368-411 2-44 (275)
397 PLN02730 enoyl-[acyl-carrier-p 95.0 0.044 9.5E-07 56.0 6.0 46 364-410 5-53 (303)
398 PRK08628 short chain dehydroge 95.0 0.052 1.1E-06 53.3 6.4 47 364-411 3-50 (258)
399 PLN02989 cinnamyl-alcohol dehy 95.0 0.046 1E-06 55.8 6.2 41 367-407 4-45 (325)
400 PRK05708 2-dehydropantoate 2-r 94.9 0.068 1.5E-06 54.6 7.3 42 369-410 3-44 (305)
401 PRK06914 short chain dehydroge 94.9 0.062 1.3E-06 53.5 6.8 44 368-411 3-47 (280)
402 PRK11613 folP dihydropteroate 94.9 0.15 3.3E-06 51.4 9.4 162 1-183 18-214 (282)
403 TIGR01289 LPOR light-dependent 94.9 0.061 1.3E-06 55.0 6.8 45 368-412 3-49 (314)
404 PRK05653 fabG 3-ketoacyl-(acyl 94.9 0.066 1.4E-06 51.7 6.8 46 366-411 3-49 (246)
405 PRK07074 short chain dehydroge 94.9 0.063 1.4E-06 52.7 6.7 45 368-412 2-47 (257)
406 PRK06928 pyrroline-5-carboxyla 94.9 0.05 1.1E-06 54.7 6.0 122 370-496 3-131 (277)
407 PRK07232 bifunctional malic en 94.9 0.21 4.6E-06 56.8 11.4 182 265-487 101-308 (752)
408 PRK14031 glutamate dehydrogena 94.8 0.2 4.3E-06 53.6 10.6 53 337-398 206-259 (444)
409 PRK05225 ketol-acid reductoiso 94.8 0.021 4.5E-07 60.6 3.2 71 365-439 33-108 (487)
410 PRK07904 short chain dehydroge 94.8 0.056 1.2E-06 53.4 6.1 45 367-411 7-54 (253)
411 PTZ00079 NADP-specific glutama 94.8 0.55 1.2E-05 50.3 13.7 55 337-400 215-270 (454)
412 PTZ00117 malate dehydrogenase; 94.8 0.082 1.8E-06 54.4 7.4 74 367-442 4-87 (319)
413 cd00958 DhnA Class I fructose- 94.8 0.98 2.1E-05 44.1 14.8 138 14-157 65-211 (235)
414 PRK12384 sorbitol-6-phosphate 94.8 0.068 1.5E-06 52.5 6.6 44 368-411 2-46 (259)
415 PRK07102 short chain dehydroge 94.8 0.067 1.5E-06 52.1 6.5 43 369-411 2-45 (243)
416 PRK14030 glutamate dehydrogena 94.8 0.25 5.5E-06 52.8 11.2 50 338-396 207-256 (445)
417 COG0240 GpsA Glycerol-3-phosph 94.8 0.063 1.4E-06 54.9 6.3 70 369-439 2-82 (329)
418 PRK05565 fabG 3-ketoacyl-(acyl 94.7 0.073 1.6E-06 51.6 6.7 46 366-411 3-50 (247)
419 PRK04663 murD UDP-N-acetylmura 94.7 0.13 2.9E-06 55.2 9.2 36 366-401 4-42 (438)
420 PRK03806 murD UDP-N-acetylmura 94.7 0.16 3.5E-06 54.5 9.7 36 366-401 4-39 (438)
421 PRK08340 glucose-1-dehydrogena 94.7 0.068 1.5E-06 52.7 6.4 42 370-411 2-44 (259)
422 PRK08017 oxidoreductase; Provi 94.7 0.063 1.4E-06 52.5 6.1 40 369-408 3-43 (256)
423 cd05312 NAD_bind_1_malic_enz N 94.7 0.28 6.1E-06 49.2 10.6 95 363-468 20-143 (279)
424 cd00452 KDPG_aldolase KDPG and 94.6 1.1 2.3E-05 42.5 14.1 119 12-159 5-123 (190)
425 cd00762 NAD_bind_malic_enz NAD 94.6 0.19 4.2E-06 49.6 9.2 38 363-400 20-68 (254)
426 PRK10538 malonic semialdehyde 94.6 0.076 1.7E-06 52.0 6.5 70 370-439 2-85 (248)
427 PRK14851 hypothetical protein; 94.6 0.051 1.1E-06 61.3 5.9 34 366-399 41-75 (679)
428 PRK06114 short chain dehydroge 94.6 0.086 1.9E-06 51.8 6.9 48 364-411 4-53 (254)
429 PRK06463 fabG 3-ketoacyl-(acyl 94.6 0.1 2.2E-06 51.3 7.3 73 365-438 4-89 (255)
430 TIGR01087 murD UDP-N-acetylmur 94.6 0.16 3.6E-06 54.3 9.5 33 370-402 1-33 (433)
431 PRK12823 benD 1,6-dihydroxycyc 94.6 0.081 1.8E-06 52.0 6.6 46 365-411 5-51 (260)
432 PLN02896 cinnamyl-alcohol dehy 94.6 0.1 2.2E-06 54.2 7.6 72 366-438 8-89 (353)
433 PRK06841 short chain dehydroge 94.6 0.084 1.8E-06 51.7 6.7 40 365-404 12-52 (255)
434 cd05290 LDH_3 A subgroup of L- 94.6 0.081 1.8E-06 54.1 6.7 72 370-443 1-83 (307)
435 cd00945 Aldolase_Class_I Class 94.6 3.6 7.9E-05 38.3 17.7 151 21-186 11-178 (201)
436 PF00899 ThiF: ThiF family; I 94.5 0.041 8.8E-07 49.0 3.9 37 368-404 2-39 (135)
437 CHL00194 ycf39 Ycf39; Provisio 94.5 0.066 1.4E-06 54.7 6.0 66 370-437 2-73 (317)
438 PRK05599 hypothetical protein; 94.5 0.075 1.6E-06 52.1 6.0 42 369-411 1-43 (246)
439 PRK07806 short chain dehydroge 94.4 0.092 2E-06 51.1 6.6 46 366-411 4-51 (248)
440 PRK07791 short chain dehydroge 94.4 0.084 1.8E-06 53.1 6.5 46 366-411 4-59 (286)
441 PRK08229 2-dehydropantoate 2-r 94.4 0.089 1.9E-06 54.4 6.8 91 369-466 3-109 (341)
442 PRK07832 short chain dehydroge 94.4 0.089 1.9E-06 52.3 6.5 43 369-411 1-44 (272)
443 PRK06249 2-dehydropantoate 2-r 94.4 0.083 1.8E-06 54.1 6.4 35 368-402 5-39 (313)
444 PRK06198 short chain dehydroge 94.4 0.093 2E-06 51.5 6.5 46 366-411 4-51 (260)
445 PRK08936 glucose-1-dehydrogena 94.4 0.11 2.4E-06 51.2 7.0 47 365-411 4-52 (261)
446 COG0281 SfcA Malic enzyme [Ene 94.3 0.56 1.2E-05 49.3 12.2 127 243-400 97-234 (432)
447 PRK07455 keto-hydroxyglutarate 94.3 0.61 1.3E-05 44.1 11.6 119 12-159 13-131 (187)
448 cd00650 LDH_MDH_like NAD-depen 94.3 0.074 1.6E-06 53.0 5.7 71 371-442 1-84 (263)
449 PRK07792 fabG 3-ketoacyl-(acyl 94.3 0.11 2.4E-06 52.8 7.1 48 364-411 8-57 (306)
450 PRK14573 bifunctional D-alanyl 94.3 0.2 4.3E-06 58.2 10.0 90 369-492 5-99 (809)
451 PLN02986 cinnamyl-alcohol dehy 94.3 0.092 2E-06 53.6 6.5 41 367-407 4-45 (322)
452 PRK06223 malate dehydrogenase; 94.3 0.13 2.8E-06 52.5 7.5 72 369-442 3-84 (307)
453 PRK06181 short chain dehydroge 94.3 0.1 2.2E-06 51.4 6.6 43 369-411 2-45 (263)
454 PRK11572 copper homeostasis pr 94.2 4.2 9.2E-05 40.1 17.5 146 19-176 8-164 (248)
455 PRK12331 oxaloacetate decarbox 94.2 5.9 0.00013 42.8 20.2 211 16-230 22-250 (448)
456 PRK08261 fabG 3-ketoacyl-(acyl 94.2 0.13 2.8E-06 55.4 7.7 74 365-438 207-294 (450)
457 TIGR01963 PHB_DH 3-hydroxybuty 94.2 0.1 2.2E-06 50.9 6.4 44 368-411 1-45 (255)
458 PRK00043 thiE thiamine-phospha 94.1 1.4 3E-05 42.1 13.9 108 23-160 21-131 (212)
459 COG5322 Predicted dehydrogenas 94.1 0.21 4.6E-06 49.3 8.1 113 363-486 162-281 (351)
460 PRK06398 aldose dehydrogenase; 94.1 0.069 1.5E-06 52.7 5.0 39 365-403 3-42 (258)
461 cd03174 DRE_TIM_metallolyase D 94.1 5.4 0.00012 39.4 18.5 197 21-232 17-245 (265)
462 PRK12747 short chain dehydroge 94.1 0.12 2.7E-06 50.5 6.7 45 367-411 3-49 (252)
463 TIGR02320 PEP_mutase phosphoen 94.0 2.6 5.6E-05 42.7 16.1 121 57-184 71-215 (285)
464 PRK08063 enoyl-(acyl carrier p 94.0 0.11 2.5E-06 50.5 6.4 45 367-411 3-49 (250)
465 PRK06523 short chain dehydroge 94.0 0.096 2.1E-06 51.5 5.8 39 365-403 6-45 (260)
466 PRK07856 short chain dehydroge 94.0 0.094 2E-06 51.4 5.7 39 365-403 3-42 (252)
467 TIGR03366 HpnZ_proposed putati 94.0 0.18 3.9E-06 50.5 7.9 92 367-464 120-218 (280)
468 PRK00436 argC N-acetyl-gamma-g 94.0 0.051 1.1E-06 56.5 3.9 91 369-464 3-99 (343)
469 PTZ00345 glycerol-3-phosphate 94.0 0.091 2E-06 55.0 5.7 71 368-439 11-104 (365)
470 PLN02602 lactate dehydrogenase 94.0 0.15 3.3E-06 53.1 7.3 72 369-442 38-119 (350)
471 PRK08264 short chain dehydroge 93.9 0.095 2E-06 50.7 5.5 41 366-406 4-46 (238)
472 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.9 7.7 0.00017 39.0 19.4 210 16-230 17-245 (275)
473 PRK12439 NAD(P)H-dependent gly 93.9 0.1 2.2E-06 54.3 5.9 69 369-439 8-88 (341)
474 cd01483 E1_enzyme_family Super 93.9 0.058 1.2E-06 48.5 3.6 40 370-409 1-41 (143)
475 PRK08642 fabG 3-ketoacyl-(acyl 93.9 0.13 2.7E-06 50.2 6.4 47 366-412 3-51 (253)
476 PRK06924 short chain dehydroge 93.9 0.099 2.1E-06 51.0 5.6 43 369-411 2-46 (251)
477 PRK12746 short chain dehydroge 93.9 0.14 3.1E-06 50.0 6.7 46 366-411 4-51 (254)
478 TIGR02415 23BDH acetoin reduct 93.9 0.14 2.9E-06 50.1 6.5 43 369-411 1-44 (254)
479 TIGR02822 adh_fam_2 zinc-bindi 93.9 0.23 5E-06 51.0 8.5 69 367-439 165-234 (329)
480 PRK05650 short chain dehydroge 93.9 0.13 2.8E-06 51.0 6.4 43 369-411 1-44 (270)
481 KOG1209 1-Acyl dihydroxyaceton 93.9 0.2 4.3E-06 48.0 7.1 73 367-439 6-92 (289)
482 COG3268 Uncharacterized conser 93.8 0.11 2.4E-06 52.7 5.7 116 369-488 7-133 (382)
483 KOG1370 S-adenosylhomocysteine 93.8 0.12 2.7E-06 51.7 5.9 69 364-437 210-278 (434)
484 PRK11730 fadB multifunctional 93.8 0.14 3E-06 58.6 7.2 38 369-406 314-351 (715)
485 PLN02586 probable cinnamyl alc 93.8 0.14 3.1E-06 53.4 6.8 70 367-437 183-256 (360)
486 PRK05086 malate dehydrogenase; 93.7 0.11 2.4E-06 53.2 5.7 72 369-442 1-83 (312)
487 PRK08226 short chain dehydroge 93.7 0.15 3.2E-06 50.2 6.5 37 366-402 4-41 (263)
488 PRK08278 short chain dehydroge 93.7 0.14 3E-06 51.1 6.2 37 366-402 4-41 (273)
489 COG0039 Mdh Malate/lactate deh 93.7 0.28 6E-06 50.1 8.4 120 369-491 1-147 (313)
490 cd08242 MDR_like Medium chain 93.6 0.27 5.8E-06 49.9 8.5 68 367-437 155-223 (319)
491 PRK06482 short chain dehydroge 93.6 0.16 3.4E-06 50.6 6.5 71 369-439 3-87 (276)
492 cd00959 DeoC 2-deoxyribose-5-p 93.6 3.9 8.4E-05 39.1 15.9 143 19-177 13-172 (203)
493 PRK05855 short chain dehydroge 93.6 0.15 3.2E-06 56.2 6.9 48 364-411 311-359 (582)
494 PRK10637 cysG siroheme synthas 93.6 0.14 2.9E-06 55.5 6.4 71 364-437 8-81 (457)
495 TIGR02632 RhaD_aldol-ADH rhamn 93.6 0.16 3.5E-06 57.7 7.3 48 364-411 410-458 (676)
496 PLN02662 cinnamyl-alcohol dehy 93.6 0.14 3E-06 52.1 6.2 37 368-404 4-41 (322)
497 cd05188 MDR Medium chain reduc 93.6 0.25 5.4E-06 48.2 7.8 94 366-465 133-233 (271)
498 PF01262 AlaDh_PNT_C: Alanine 93.6 0.15 3.2E-06 47.3 5.9 96 366-466 18-141 (168)
499 PLN02214 cinnamoyl-CoA reducta 93.6 0.15 3.2E-06 52.8 6.5 38 366-403 8-46 (342)
500 PRK07775 short chain dehydroge 93.6 0.19 4.2E-06 50.0 7.1 46 366-411 8-54 (274)
No 1
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=100.00 E-value=1.2e-121 Score=992.12 Aligned_cols=513 Identities=56% Similarity=0.933 Sum_probs=463.3
Q ss_pred CccccCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcCCCcEEEEeccCCCCCCCC
Q 010050 2 GVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYE 81 (519)
Q Consensus 2 ~~~~~~~~~~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~~~pii~T~R~~~eGG~~~ 81 (519)
|.-+|.+++|+||||+++++.++++.+++++...++|+||||+|+|.+..+.+++..+++..++|+|||+|+++|||.|+
T Consensus 14 ~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~ 93 (529)
T PLN02520 14 GSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYE 93 (529)
T ss_pred cccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCC
Confidence 55678899999999999999999999998887789999999999999765555677777777899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEc
Q 010050 82 GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (519)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~ 161 (519)
+++++|+++|+.+++.+++|||||++..++..+.+...++.++|+|+|||||++||+.++|.+++++|.+.||||+|||+
T Consensus 94 ~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~ 173 (529)
T PLN02520 94 GDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIAT 173 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 99999999999999999999999999988666555556668999999999999999999999999999999999999999
Q ss_pred ccCCHhHHHHHHHHhccCCCCEEEEecCccchhhhhccCCCCCccccccCC--CCCCCCCCChHHHhhhhhcccccCCce
Q 010050 162 SVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK--GTPVLGLPTVESLRQTYKVEHINADTK 239 (519)
Q Consensus 162 ~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~--~~sApGQ~~~~~l~~~~~~~~~~~~t~ 239 (519)
||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++ .++||||+++++++++|++..++++|+
T Consensus 174 ~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~t~ 253 (529)
T PLN02520 174 TALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTK 253 (529)
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhcccCCce
Confidence 999999999999988777899999999999999999999999999999987 459999999999999999999998999
Q ss_pred EEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccCHHHhhccc
Q 010050 240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAA 319 (519)
Q Consensus 240 ~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGa 319 (519)
+|||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|+|+|||||||+++++++|++|+.|+.+||
T Consensus 254 ~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGA 333 (529)
T PLN02520 254 VYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGA 333 (529)
T ss_pred EEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeC
Q 010050 320 VNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (519)
Q Consensus 320 vNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nR 399 (519)
||||++++++|+|+||||||.||+++|++.+...+.. +..+..+++|+++|+|+||+|++++++|.+.|++|+++||
T Consensus 334 VNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~---~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR 410 (529)
T PLN02520 334 INTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSS---PASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANR 410 (529)
T ss_pred ceEEEEeCCCCEEEEEcccHHHHHHHHHhhhcccccc---cccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 9999986227999999999999999997543200000 0012457789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHc
Q 010050 400 DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA 479 (519)
Q Consensus 400 t~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~ 479 (519)
+.++++++++.++...++++++.+.....+|+||||||+||.|..+..|++.+++++..+|+|++|+|.+|+|+++|+++
T Consensus 411 ~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~ 490 (529)
T PLN02520 411 TYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEES 490 (529)
T ss_pred CHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHC
Confidence 99999999998865445555443312345799999999999987677788888899999999999999999999999999
Q ss_pred CCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010050 480 GAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 517 (519)
Q Consensus 480 G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~ 517 (519)
||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus 491 G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~l~~ 528 (529)
T PLN02520 491 GAIIVSGTEMFIRQAYEQFERFTGLPAPKELFREIMSK 528 (529)
T ss_pred CCeEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999986543
No 2
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=100.00 E-value=2.8e-106 Score=863.14 Aligned_cols=458 Identities=27% Similarity=0.436 Sum_probs=411.4
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~ll 91 (519)
||||||++++.++++.+++.+. .++|+||||+|+|.+.++. .+..+++..+.|++ |+|+++ ++++++|++++
T Consensus 1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l 72 (477)
T PRK09310 1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM 72 (477)
T ss_pred CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence 6999999999999999998876 6799999999999876543 36777764566766 999987 46899999999
Q ss_pred HHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCHhHHHH
Q 010050 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIAR 171 (519)
Q Consensus 92 ~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~~D~~~ 171 (519)
+.++++|+||||||++.+++.++++... ++++|+|+|||||+. +++.+++++|.++||||+|||+||++.+|+++
T Consensus 73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ 147 (477)
T PRK09310 73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQLYNEMLASAADYYKIAVSSSSSTDLLN 147 (477)
T ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence 9999999999999999998888777544 359999999999942 57999999999999999999999999999999
Q ss_pred HHHHhccCCCCEEEEecCccchhhhhccCCCCCccccccCCC--CCCCCCCChHHHhhhhhcccccCCceEEeeccCCCc
Q 010050 172 IFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 249 (519)
Q Consensus 172 l~~~~~~~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~--~sApGQ~~~~~l~~~~~~~~~~~~t~~~~liG~pi~ 249 (519)
+++++...+.|+|+|+||+.|++||++++.|||++||+++.. ++||||++++++. .|++..++.+|++|||||+||+
T Consensus 148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~ 226 (477)
T PRK09310 148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD 226 (477)
T ss_pred HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence 999988888899999999999999999999999999999865 4799999999998 5788889888999999999999
Q ss_pred ccCCHHHHHHHHHHcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEec
Q 010050 250 HSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP 327 (519)
Q Consensus 250 hS~SP~~hn~~f~~~gl~~~Y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~ 327 (519)
||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||++|++|||++|+.|+.+||||||+++
T Consensus 227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~- 305 (477)
T PRK09310 227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR- 305 (477)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence 999999999999999999999999984 79999999998999999999999999999999999999999999999987
Q ss_pred CCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 328 SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 328 ~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
+|+|+||||||.||+.+|++. +..+++++++|+|+||+|+++++.|.+.|++|+++||+.++++++
T Consensus 306 -~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~l 371 (477)
T PRK09310 306 -NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEAL 371 (477)
T ss_pred -CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 899999999999999998642 245778999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccH
Q 010050 408 ASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGV 487 (519)
Q Consensus 408 a~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl 487 (519)
++.++....+++++.. ..++|+||||||.|+. ++. .+. .+|+|++|+|.+|+|+++|+++||++++|+
T Consensus 372 a~~~~~~~~~~~~~~~--l~~~DiVInatP~g~~-------~~~-~l~--~~v~D~~Y~P~~T~ll~~A~~~G~~~~~G~ 439 (477)
T PRK09310 372 ASRCQGKAFPLESLPE--LHRIDIIINCLPPSVT-------IPK-AFP--PCVVDINTLPKHSPYTQYARSQGSSIIYGY 439 (477)
T ss_pred HHHhccceechhHhcc--cCCCCEEEEcCCCCCc-------chh-HHh--hhEEeccCCCCCCHHHHHHHHCcCEEECcH
Confidence 9887654445555433 3578999999999882 222 232 389999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHH
Q 010050 488 EMFLRQAIGQFNLFTGKEAPKEF 510 (519)
Q Consensus 488 ~mli~Qa~~qf~lw~g~~~~~~~ 510 (519)
+||++||+.||++|||.+.+.+.
T Consensus 440 ~Ml~~Qa~~~f~lw~g~~~~~~~ 462 (477)
T PRK09310 440 EMFAEQALLQFRLWFPTLLFKHL 462 (477)
T ss_pred HHHHHHHHHHHHHHcCCcccHHH
Confidence 99999999999999999998654
No 3
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-72 Score=558.56 Aligned_cols=271 Identities=37% Similarity=0.613 Sum_probs=243.2
Q ss_pred ccCCceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccC
Q 010050 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (519)
Q Consensus 234 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 311 (519)
++..|++|||||+||+||+||.|||++|+++|+|+.|.+++++ +|+++++.++.+++.|+|||||||+++++|||++|
T Consensus 2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~ 81 (283)
T COG0169 2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS 81 (283)
T ss_pred CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999999995 89999999999999999999999999999999999
Q ss_pred HHHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCC
Q 010050 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (519)
Q Consensus 312 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G 391 (519)
+.|+.+||||||+++. +|+|+||||||.||.++|++.. ...+..+++++|+||||+|||++++|++.|
T Consensus 82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~-----------~~~~~~~~~vlilGAGGAarAv~~aL~~~g 149 (283)
T COG0169 82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFG-----------LPVDVTGKRVLILGAGGAARAVAFALAEAG 149 (283)
T ss_pred HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcC-----------CCcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 9999999999999982 4999999999999999987631 124556899999999999999999999999
Q ss_pred C-eEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEec
Q 010050 392 A-RVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY 465 (519)
Q Consensus 392 ~-~v~i~nRt~~ka~~La~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y 465 (519)
+ +|+|+|||.+||++|++.++... ..+.++.. ..++|+||||||+||.+....++++.+.+++..+|+|++|
T Consensus 150 ~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY 227 (283)
T COG0169 150 AKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY 227 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence 8 99999999999999999997432 22333322 1258999999999998864445667778999999999999
Q ss_pred CCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010050 466 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 518 (519)
Q Consensus 466 ~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~~ 518 (519)
+|.+|||+++|+++||++++|++||++||++||++|||.++|.+.|++++.+.
T Consensus 228 ~P~~TplL~~A~~~G~~~idGl~Mlv~Qaa~aF~lwtg~~p~~~~~~~a~~~~ 280 (283)
T COG0169 228 NPLETPLLREARAQGAKTIDGLGMLVHQAAEAFELWTGVEPPVDVMKEALIEA 280 (283)
T ss_pred CCCCCHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988764
No 4
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=100.00 E-value=4e-71 Score=553.76 Aligned_cols=265 Identities=31% Similarity=0.432 Sum_probs=235.2
Q ss_pred CceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEeccc-------CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhc
Q 010050 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 309 (519)
Q Consensus 237 ~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~-------~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~ 309 (519)
++++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||++++++||+
T Consensus 3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~ 82 (283)
T PRK14027 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE 82 (283)
T ss_pred CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence 578999999999999999999999999999999999996 3789999999888999999999999999999999
Q ss_pred cCHHHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHh
Q 010050 310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS 389 (519)
Q Consensus 310 ~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~ 389 (519)
+|+.|+.+||||||++++ +|+|+||||||.||+++|++. ....++|+++|+||||+|||++++|.+
T Consensus 83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~-------------~~~~~~k~vlilGaGGaarAi~~aL~~ 148 (283)
T PRK14027 83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG-------------LPNAKLDSVVQVGAGGVGNAVAYALVT 148 (283)
T ss_pred CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhc-------------CcCcCCCeEEEECCcHHHHHHHHHHHH
Confidence 999999999999999853 899999999999999998642 124568999999999999999999999
Q ss_pred CCC-eEEEEeCCHHHHHHHHHHhcCCc----c---ccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEE
Q 010050 390 RGA-RVVIFDIDFERAKSLASDVMGAA----R---PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF 461 (519)
Q Consensus 390 ~G~-~v~i~nRt~~ka~~La~~~~~~~----~---~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~ 461 (519)
+|+ +|+|+|||.+|+++|++++.... + ++.++.. ....+|+||||||+||.+. +..|++.+.+.+..+|+
T Consensus 149 ~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~~~divINaTp~Gm~~~-~~~~~~~~~l~~~~~v~ 226 (283)
T PRK14027 149 HGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVG 226 (283)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH-HHhhcCEEEEcCCCCCCCC-CCCCCCHHHcCCCcEEE
Confidence 999 99999999999999998874211 1 1111111 2346899999999999875 44567777788899999
Q ss_pred EEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010050 462 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 517 (519)
Q Consensus 462 Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~ 517 (519)
|++|+|.+|+|+++|+++||++++|++||++||++||++|||.++|.+.|++++.+
T Consensus 227 D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lw~G~~~~~~~~~~~~~~ 282 (283)
T PRK14027 227 DVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS 282 (283)
T ss_pred EcccCCCCCHHHHHHHHCCCEEEccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999987653
No 5
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-70 Score=551.68 Aligned_cols=266 Identities=31% Similarity=0.522 Sum_probs=236.1
Q ss_pred ccCCceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccC
Q 010050 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (519)
Q Consensus 234 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 311 (519)
++++|++|||||+||+||+||.|||++|+++|+|+.|.+++++ +|+++++.++..+|.|+|||||||++|++|+|++|
T Consensus 3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~ 82 (288)
T PRK12749 3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT 82 (288)
T ss_pred cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence 4567899999999999999999999999999999999999994 79999999988899999999999999999999999
Q ss_pred HHHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCC
Q 010050 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (519)
Q Consensus 312 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G 391 (519)
+.|+.+||||||+++ +|+|+||||||.||+++|++. +.++++|+++|+||||+|||++++|..+|
T Consensus 83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g 147 (288)
T PRK12749 83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEG 147 (288)
T ss_pred HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999876 899999999999999998642 24578899999999999999999999999
Q ss_pred C-eEEEEeCC---HHHHHHHHHHhcCCc---cccccc------cccCCCCccEEEECCCCCCCCCCCCCC-CCcccccCC
Q 010050 392 A-RVVIFDID---FERAKSLASDVMGAA---RPFEDI------LNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDY 457 (519)
Q Consensus 392 ~-~v~i~nRt---~~ka~~La~~~~~~~---~~~~~l------~~~~~~~~divInat~~g~~~~~~~~~-l~~~~l~~~ 457 (519)
+ +|+|+||+ .+||++|+++++... +.+..+ .+ ...++|+||||||+||.|..+..+ ++.+.++++
T Consensus 148 ~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~-~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~ 226 (288)
T PRK12749 148 LKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLVNDISLLHPG 226 (288)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh-hcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCC
Confidence 9 99999999 469999999885321 122222 11 235689999999999998655433 345668889
Q ss_pred cEEEEEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010050 458 QLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 515 (519)
Q Consensus 458 ~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~ 515 (519)
.+|+|++|+|.+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++
T Consensus 227 ~~v~D~vY~P~~T~ll~~A~~~G~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~~ 284 (288)
T PRK12749 227 LLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284 (288)
T ss_pred CEEEEecCCCccCHHHHHHHHCCCeEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999865
No 6
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=2.3e-70 Score=550.02 Aligned_cols=266 Identities=32% Similarity=0.427 Sum_probs=239.0
Q ss_pred cCCceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccC-------CHHHHHHhcCCCCCCEEEeccCchHHHHhhh
Q 010050 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD-------DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 307 (519)
Q Consensus 235 ~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~-------~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~ 307 (519)
+..+++|||||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||+++++||
T Consensus 2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~ 81 (284)
T PRK12549 2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL 81 (284)
T ss_pred CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence 345789999999999999999999999999999999999863 6899999998889999999999999999999
Q ss_pred hccCHHHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHH
Q 010050 308 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGA 387 (519)
Q Consensus 308 d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L 387 (519)
|++|+.|+.+||||||+++ +|+|+||||||.||+++|+... ..+.+++++|+|+||+||+++++|
T Consensus 82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL 146 (284)
T PRK12549 82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHAL 146 (284)
T ss_pred ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999887 8999999999999999987521 246789999999999999999999
Q ss_pred HhCCC-eEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEE
Q 010050 388 KSRGA-RVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF 461 (519)
Q Consensus 388 ~~~G~-~v~i~nRt~~ka~~La~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~ 461 (519)
...|+ +|+|+||+.+|+++++++++... ..++++.+ ...++|+||||||+||.+. +..|++.+++++..+|+
T Consensus 147 ~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~-~~~~aDiVInaTp~Gm~~~-~~~~~~~~~l~~~~~v~ 224 (284)
T PRK12549 147 LTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAA-ALAAADGLVHATPTGMAKH-PGLPLPAELLRPGLWVA 224 (284)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHh-hhCCCCEEEECCcCCCCCC-CCCCCCHHHcCCCcEEE
Confidence 99999 99999999999999999875321 12333322 3467899999999999875 44678888899999999
Q ss_pred EEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010050 462 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 517 (519)
Q Consensus 462 Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~ 517 (519)
|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus 225 DivY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~~wtg~~~~~~~~~~~~~~ 280 (284)
T PRK12549 225 DIVYFPLETELLRAARALGCRTLDGGGMAVFQAVDAFELFTGREPDAERMLAHFAS 280 (284)
T ss_pred EeeeCCCCCHHHHHHHHCCCeEecCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998765
No 7
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-69 Score=543.35 Aligned_cols=267 Identities=34% Similarity=0.557 Sum_probs=238.2
Q ss_pred ccCCceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccC
Q 010050 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (519)
Q Consensus 234 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 311 (519)
++.+|++|||||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|+|+|||||||+++++|||++|
T Consensus 5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~ 84 (289)
T PRK12548 5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS 84 (289)
T ss_pred cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence 5667889999999999999999999999999999999999994 79999999988899999999999999999999999
Q ss_pred HHHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCC
Q 010050 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (519)
Q Consensus 312 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G 391 (519)
+.|+.+||||||+++ +|+|+||||||.||+.+|++. ...+++|+++|+||||+|||++++|.+.|
T Consensus 85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlI~GAGGagrAia~~La~~G 149 (289)
T PRK12548 85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREH-------------GVDVKGKKLTVIGAGGAATAIQVQCALDG 149 (289)
T ss_pred HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 899999999999999998642 23467899999999999999999999999
Q ss_pred C-eEEEEeCCH---HHHHHHHHHhcCCc-------ccccc---ccccCCCCccEEEECCCCCCCCCCCCCCC-CcccccC
Q 010050 392 A-RVVIFDIDF---ERAKSLASDVMGAA-------RPFED---ILNFQPEKGAILANATPLGMHPNTDRVPV-SEETLRD 456 (519)
Q Consensus 392 ~-~v~i~nRt~---~ka~~La~~~~~~~-------~~~~~---l~~~~~~~~divInat~~g~~~~~~~~~l-~~~~l~~ 456 (519)
+ +|+|+||+. ++++++++++.... .++.+ +.+ ....+|+||||||+||.|..+..|+ +.+++.+
T Consensus 150 ~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~ 228 (289)
T PRK12548 150 AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVNATLVGMKPNDGETNIKDTSVFRK 228 (289)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCC
Confidence 9 699999997 89999988774211 12222 111 2346799999999999987666777 5567889
Q ss_pred CcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010050 457 YQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 516 (519)
Q Consensus 457 ~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~ 516 (519)
..+|+|++|+|.+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++.
T Consensus 229 ~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~lwtg~~~~~~~~~~~~~ 288 (289)
T PRK12548 229 DLVVADTVYNPKKTKLLEDAEAAGCKTVGGLGMLLWQGAEAYKLYTGKDMPVEEVKELYF 288 (289)
T ss_pred CCEEEEecCCCCCCHHHHHHHHCCCeeeCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998775
No 8
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-68 Score=536.09 Aligned_cols=268 Identities=32% Similarity=0.528 Sum_probs=241.6
Q ss_pred cCCceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccCH
Q 010050 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (519)
Q Consensus 235 ~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~ 312 (519)
+.+|++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus 2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~ 81 (278)
T PRK00258 2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE 81 (278)
T ss_pred CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence 46789999999999999999999999999999999999999 5899999999888999999999999999999999999
Q ss_pred HHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC
Q 010050 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA 392 (519)
Q Consensus 313 ~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~ 392 (519)
.|+++||||||+++ +|+|+||||||.||+++|++.+ +.++.+++++|+|+||+||+++++|...|+
T Consensus 82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~------------~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~ 147 (278)
T PRK00258 82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL------------GVDLKGKRILILGAGGAARAVILPLLDLGV 147 (278)
T ss_pred HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc------------CCCCCCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence 99999999999976 8999999999999999986421 245788999999999999999999999996
Q ss_pred -eEEEEeCCHHHHHHHHHHhcCCc-ccc-ccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCc
Q 010050 393 -RVVIFDIDFERAKSLASDVMGAA-RPF-EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK 469 (519)
Q Consensus 393 -~v~i~nRt~~ka~~La~~~~~~~-~~~-~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~ 469 (519)
+|+|+||+.++++++++.++... +++ .++.+ ...++|+||||||+||.|..+..|++.+.+++..+|+|++|+|.+
T Consensus 148 ~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~ 226 (278)
T PRK00258 148 AEITIVNRTVERAEELAKLFGALGKAELDLELQE-ELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP 226 (278)
T ss_pred CEEEEEeCCHHHHHHHHHHhhhccceeecccchh-ccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCC
Confidence 99999999999999999886332 222 12222 356799999999999987655567777889999999999999999
Q ss_pred CHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010050 470 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 517 (519)
Q Consensus 470 T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~ 517 (519)
|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus 227 T~ll~~A~~~G~~~~~G~~Ml~~Qa~~~f~~wtg~~~~~~~~~~~~~~ 274 (278)
T PRK00258 227 TPFLAWAKAQGARTIDGLGMLVHQAAEAFELWTGVRPPVEPMLAALRA 274 (278)
T ss_pred CHHHHHHHHCcCeecCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998865
No 9
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-68 Score=528.92 Aligned_cols=262 Identities=32% Similarity=0.469 Sum_probs=233.5
Q ss_pred cccCCceE-EeeccCCCcccCCHHHHHHHHHHcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccC
Q 010050 233 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (519)
Q Consensus 233 ~~~~~t~~-~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~ 311 (519)
+++.+|++ |||||+| ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++|||++|
T Consensus 4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~ 81 (272)
T PRK12550 4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD 81 (272)
T ss_pred cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence 35667885 9999999 77889999999999999999999998899999999988899999999999999999999999
Q ss_pred HHHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCC
Q 010050 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (519)
Q Consensus 312 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G 391 (519)
+.|+.+||||||+++ +|+|+||||||.||+++|++. +.. .+++++|+||||+|||++++|.++|
T Consensus 82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~-~~~~vlilGaGGaarAi~~aL~~~g 145 (272)
T PRK12550 82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-------------QVP-PDLVVALRGSGGMAKAVAAALRDAG 145 (272)
T ss_pred HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-------------CCC-CCCeEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 899999999999999998642 122 3578999999999999999999999
Q ss_pred C-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC--CCCCCCcccccCCcEEEEEecCCC
Q 010050 392 A-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT--DRVPVSEETLRDYQLVFDAVYTPR 468 (519)
Q Consensus 392 ~-~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~--~~~~l~~~~l~~~~~v~Di~Y~P~ 468 (519)
+ +|+|+||+.+++++|++.++.... +++ ....+|+||||||+||.|.. +..|++.+.+++..+|+|++|+|.
T Consensus 146 ~~~i~i~nR~~~~a~~la~~~~~~~~--~~~---~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~ 220 (272)
T PRK12550 146 FTDGTIVARNEKTGKALAELYGYEWR--PDL---GGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPA 220 (272)
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCcch--hhc---ccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCc
Confidence 9 899999999999999998753221 111 12458999999999998753 334677788999999999999999
Q ss_pred cCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010050 469 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 517 (519)
Q Consensus 469 ~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~ 517 (519)
+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++..
T Consensus 221 ~T~ll~~A~~~G~~~i~Gl~MLi~Qa~~~f~lwtg~~~~~~~~~~~~~~ 269 (272)
T PRK12550 221 ETPLIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELIAEAAAF 269 (272)
T ss_pred cCHHHHHHHHCcCeEeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754
No 10
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=100.00 E-value=5.9e-67 Score=525.46 Aligned_cols=263 Identities=29% Similarity=0.429 Sum_probs=225.3
Q ss_pred CceEEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccC---CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccCHH
Q 010050 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313 (519)
Q Consensus 237 ~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~---~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~ 313 (519)
.+++|||||+||+||+||.|||++|+++|+|+.|.+++++ ++.++++.++ .+|.|+|||||||++++++||++|+.
T Consensus 4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~ 82 (282)
T TIGR01809 4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR 82 (282)
T ss_pred CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence 4689999999999999999999999999999999999973 5888888774 49999999999999999999999999
Q ss_pred HhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC-
Q 010050 314 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA- 392 (519)
Q Consensus 314 A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~- 392 (519)
|+++||||||++++ +|+|+||||||.||+.+|++. + ....+++++++|||+||+||+++++|.++|+
T Consensus 83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~----~-------~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~ 150 (282)
T TIGR01809 83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANI----G-------KFEPLAGFRGLVIGAGGTSRAAVYALASLGVT 150 (282)
T ss_pred HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhh----C-------CccccCCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence 99999999999853 899999999999999998642 1 0014678999999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCc--ccc---ccccccCCCCccEEEECCCCCCCCCCCCCCCC--c-----ccccCCcEE
Q 010050 393 RVVIFDIDFERAKSLASDVMGAA--RPF---EDILNFQPEKGAILANATPLGMHPNTDRVPVS--E-----ETLRDYQLV 460 (519)
Q Consensus 393 ~v~i~nRt~~ka~~La~~~~~~~--~~~---~~l~~~~~~~~divInat~~g~~~~~~~~~l~--~-----~~l~~~~~v 460 (519)
+|+|+|||.+|+++|+++++... ..+ +++.. ...++|+||||||+||... ...+. . +.+++..+|
T Consensus 151 ~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~-~~~~~DiVInaTp~g~~~~--~~~l~~~~~~~~~~~~~~~~~v 227 (282)
T TIGR01809 151 DITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLA-IEKAAEVLVSTVPADVPAD--YVDLFATVPFLLLKRKSSEGIF 227 (282)
T ss_pred eEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhh-cccCCCEEEECCCCCCCCC--HHHhhhhhhhhccccCCCCcEE
Confidence 89999999999999999886421 112 22323 3467899999999999432 11111 0 113467899
Q ss_pred EEEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010050 461 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 515 (519)
Q Consensus 461 ~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~ 515 (519)
+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++
T Consensus 228 ~D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~ 282 (282)
T TIGR01809 228 LDAAYDPWPTPLVAIVSAAGWRVISGLQMLLHQGFAQFEQWTGMPAPREAMACAL 282 (282)
T ss_pred EEEeeCCCCCHHHHHHHHCCCEEECcHHHHHHHHHHHHHHHHCCCChHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999998864
No 11
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=100.00 E-value=3e-65 Score=511.15 Aligned_cols=264 Identities=33% Similarity=0.527 Sum_probs=234.9
Q ss_pred eEEeeccCCCcccCCHHHHHHHHHHcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccCHHHhh
Q 010050 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (519)
Q Consensus 239 ~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ 316 (519)
++|||||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||+++++++|++|+.|++
T Consensus 1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~ 80 (270)
T TIGR00507 1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL 80 (270)
T ss_pred CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence 47999999999999999999999999999999999994 7999999998889999999999999999999999999999
Q ss_pred ccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEE
Q 010050 317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396 (519)
Q Consensus 317 iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i 396 (519)
+||||||+++ +|+|+||||||.||+++|++. ....++++++|+|+||+|++++++|.+.|++|++
T Consensus 81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-------------~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-------------IPLRPNQRVLIIGAGGAARAVALPLLKADCNVII 145 (270)
T ss_pred hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-------------CCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence 9999999977 899999999999999998641 1235678999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHH
Q 010050 397 FDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD 475 (519)
Q Consensus 397 ~nRt~~ka~~La~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~ 475 (519)
+||+.+++++++++++... .....+.+....++|+||||||.||.+..+..+++.+.++++.+|+|++|+|.+|+|+++
T Consensus 146 ~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~ 225 (270)
T TIGR00507 146 ANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAE 225 (270)
T ss_pred EeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHH
Confidence 9999999999998875311 111111111234689999999999987655556777788899999999999999999999
Q ss_pred HHHcCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010050 476 AEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 517 (519)
Q Consensus 476 A~~~G~~~~~Gl~mli~Qa~~qf~lw~g~~~~~~~~~~~~~~ 517 (519)
|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus 226 A~~~G~~~vdG~~Ml~~Qa~~~f~~w~g~~~~~~~~~~~~~~ 267 (270)
T TIGR00507 226 AKSLGTKTIDGLGMLVAQAALAFELWTGVEPDIEKMFEQLIA 267 (270)
T ss_pred HHHCCCeeeCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999998865
No 12
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=2.2e-53 Score=419.99 Aligned_cols=228 Identities=24% Similarity=0.408 Sum_probs=205.9
Q ss_pred cCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcc----hHHHHHhc-CCCcEEEEeccCCCCCCC
Q 010050 6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK----DLEIILTK-KPLPVLIVYRPKWAGGLY 80 (519)
Q Consensus 6 ~~~~~~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~----~l~~l~~~-~~~pii~T~R~~~eGG~~ 80 (519)
...+.|+|||||.+++.++++++++.+...++|+||||+|+|.+.++.+ .+..+++. .++|+|||+|+++|||.+
T Consensus 11 ~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~ 90 (253)
T PRK02412 11 IGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEI 90 (253)
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCC
Confidence 3568899999999999999999999888889999999999998754322 23444443 368999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhC-CcEEEEeccccchHHHHhHh-ccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 010050 81 EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 158 (519)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~-~~~vDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~K 158 (519)
++++++|+++++.+++.| ++|||||++.+++.++++.. .++.++++|+|||||++||+.+++.+++++|+++||||+|
T Consensus 91 ~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivK 170 (253)
T PRK02412 91 ALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVK 170 (253)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999 99999999998887877763 4668999999999999999999999999999999999999
Q ss_pred EEcccCCHhHHHHHHHHhcc-----CCCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhhccc
Q 010050 159 LVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233 (519)
Q Consensus 159 ia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~~ 233 (519)
||+||++.+|++++++++.. .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++..+
T Consensus 171 ia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~l~ 250 (253)
T PRK02412 171 IAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEILH 250 (253)
T ss_pred EEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 99999999999999998743 4689999999999999999999999999999999999999999999999987653
No 13
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-53 Score=404.19 Aligned_cols=222 Identities=23% Similarity=0.384 Sum_probs=199.8
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CCcchHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 010050 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (519)
Q Consensus 10 ~~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~-~~~~~l~~l~~~-~~~pii~T~R~~~eGG~~~~~~~~~ 87 (519)
+|+||+|+.+.+..++.+++++++..++|++|||+|+|... +..+....+++. ...|+|||+|+++|||.|++++++|
T Consensus 1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~ 80 (231)
T COG0710 1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY 80 (231)
T ss_pred CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence 48999999999999999999999999999999999999921 112334455543 4679999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCH
Q 010050 88 LEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (519)
Q Consensus 88 ~~ll~~~~~~~-~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~ 166 (519)
++++..+++.+ ++|||||++++.+.++++...+ ...++|+|||||++||+++++.+++.+|...||||+|||+||++.
T Consensus 81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~ 159 (231)
T COG0710 81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK 159 (231)
T ss_pred HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence 99999999986 9999999999987777776432 233499999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcc---CCCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhhcc
Q 010050 167 TEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (519)
Q Consensus 167 ~D~~~l~~~~~~---~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (519)
+|++++++++.. .+.|+|+||||..|++||+++++|||++||+++++++||||++++++++++...
T Consensus 160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLL 228 (231)
T ss_pred HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCCHHHHHHHHHHh
Confidence 999999999876 689999999999999999999999999999999999999999999999988754
No 14
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=100.00 E-value=4.3e-52 Score=405.63 Aligned_cols=217 Identities=29% Similarity=0.506 Sum_probs=193.8
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHH----HHHh-cCCCcEEEEeccCCCCCCCCCCHHH
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILT-KKPLPVLIVYRPKWAGGLYEGDEHK 86 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~----~l~~-~~~~pii~T~R~~~eGG~~~~~~~~ 86 (519)
+|||||++++.+++..++++. ..|+|+||||+|+|.+.++.+.+. .++. ..++|+|||+|+++|||.++.++++
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~ 79 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE 79 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence 599999999999999999887 789999999999998654322222 2221 1478999999999999999999999
Q ss_pred HHHHHHHH-HHhCCcEEEEeccccchHHHHhHh-ccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccC
Q 010050 87 RLEALHLA-EDLGADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (519)
Q Consensus 87 ~~~ll~~~-~~~~~~~vDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~ 164 (519)
|+++++.+ .+.++||||||++.+++..+++.. .+++++|+|+|||||++||+.+++.+++++|.++||||+|||+||+
T Consensus 80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 99999998 567799999999999888777763 4678999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHhccC----CCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhh
Q 010050 165 DITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 229 (519)
Q Consensus 165 ~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~ 229 (519)
+.+|++++++++.+. ++|+|+|+||+.|++||+++++|||++||++++.++||||+++++|+++|
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~ 228 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhhC
Confidence 999999999997543 57999999999999999999999999999999999999999999999764
No 15
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=100.00 E-value=1.2e-51 Score=401.91 Aligned_cols=217 Identities=34% Similarity=0.560 Sum_probs=185.6
Q ss_pred EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---cchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 010050 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (519)
Q Consensus 14 cv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~---~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~l 90 (519)
||||+++|.+++..+++++...|+|+||||+|+|.+.+. .+++..+++.+++|+|||+|+++|||.+..++++|+++
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence 999999999999999999876699999999999996322 35677788778999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCHhHHH
Q 010050 91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIA 170 (519)
Q Consensus 91 l~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~~D~~ 170 (519)
|+.+++.|++|||||++..++........+++++|+|+|||||++||+++++.+++++|.++||||+|||+++++.+|++
T Consensus 81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 160 (224)
T PF01487_consen 81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL 160 (224)
T ss_dssp HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence 99999999999999999665544333334568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhh
Q 010050 171 RIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (519)
Q Consensus 171 ~l~~~~~~~----~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~ 230 (519)
++++++.+. +.|+|+|+||+.|++||+++++|||++||++.++++||||+++++++++|+
T Consensus 161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~~~ 224 (224)
T PF01487_consen 161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREILH 224 (224)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHHhC
Confidence 999997654 589999999999999999999999999999889999999999999999874
No 16
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.6e-50 Score=394.38 Aligned_cols=219 Identities=20% Similarity=0.344 Sum_probs=184.8
Q ss_pred eeEEEecccCC-HHHH-HHHHHHHHhcCCCEEEEEecCCCCCCCcchHH----HHHh-cCCCcEEEEeccCCCCCCCCCC
Q 010050 11 TMICAPLMAQS-VEQV-LSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILT-KKPLPVLIVYRPKWAGGLYEGD 83 (519)
Q Consensus 11 ~~icv~l~~~~-~~~~-~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~----~l~~-~~~~pii~T~R~~~eGG~~~~~ 83 (519)
+.||+++.... +++. ..+++.+ ..++|+||||+|+|.+.+. +++. .+++ ..+.|+|||+|+++|||.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~ 81 (238)
T PRK13575 4 VEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFT 81 (238)
T ss_pred eeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCC
Confidence 45667776653 5554 4444443 4689999999999987543 2343 3333 2578999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEeccc--cchHHHHhH-hccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 010050 84 EHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (519)
Q Consensus 84 ~~~~~~ll~~~~~~~-~~~vDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Ki 159 (519)
+++|+++++.++..+ +||||||++. +.+..+++. ..++.++++|+|||||++||+.++|.+++++|.++||||+||
T Consensus 82 ~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~Ki 161 (238)
T PRK13575 82 NDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKL 161 (238)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 999999998888776 8999999986 344455555 355689999999999999999999999999999999999999
Q ss_pred EcccCCHhHHHHHHHHhcc----CCCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhhc
Q 010050 160 VFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231 (519)
Q Consensus 160 a~~~~~~~D~~~l~~~~~~----~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~ 231 (519)
|+||++.+|+++|++++.+ .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|++++++
T Consensus 162 Av~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAPGQi~v~~l~~i~~~ 237 (238)
T PRK13575 162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAPGQIHVTDLKAQVTL 237 (238)
T ss_pred EecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCCCCCCHHHHHHHHHh
Confidence 9999999999999998754 36799999999999999999999999999999999999999999999998754
No 17
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=100.00 E-value=5.2e-50 Score=390.55 Aligned_cols=215 Identities=36% Similarity=0.561 Sum_probs=193.0
Q ss_pred eEEEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCC---CcchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 010050 12 MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQ---PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR 87 (519)
Q Consensus 12 ~icv~l~~~-~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~---~~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~ 87 (519)
+||+||.++ +.++....++... |+|+||||+|+|.+.. ..++++.+++..+.|+|||+|+++|||.+.+++++|
T Consensus 1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 78 (225)
T cd00502 1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY 78 (225)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence 599999999 9999888776542 9999999999998642 234677777767799999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeccccchHHHHhH-hccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCH
Q 010050 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (519)
Q Consensus 88 ~~ll~~~~~~~~~~vDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~ 166 (519)
+++++.++++|++|||||++. +.++++. ..+++++|+|+|||+|++||+.+++.+++++|.++||||+|+|+||++.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~ 156 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI 156 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 999999999999999999987 3344444 3456899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccC----CCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhh
Q 010050 167 TEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (519)
Q Consensus 167 ~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~ 230 (519)
+|++++++++... +.|+|+|+||+.|++||++++.|||++||+++++++||||+++++++++|.
T Consensus 157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALS 224 (225)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHHHHh
Confidence 9999999997654 469999999999999999999999999999999999999999999998875
No 18
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=2.5e-49 Score=378.82 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=174.7
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 010050 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (519)
Q Consensus 9 ~~~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~ 88 (519)
+.|+||+|+++++.++++.+.+. .|+|+||||+|+|.+.... +..+++....|+|||+|+++|||.+++++++|+
T Consensus 1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~ 75 (216)
T PRK13576 1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI 75 (216)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence 57999999999999999887543 5899999999999875432 223333445799999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCH-h
Q 010050 89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI-T 167 (519)
Q Consensus 89 ~ll~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~-~ 167 (519)
++|+.+++.+. ++|||++...+.. ..+.++|+|||||++||+.++|.+++++|.+ ||||+|||+||++. .
T Consensus 76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~ 146 (216)
T PRK13576 76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK 146 (216)
T ss_pred HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence 99999999975 7799998544311 1246799999999999999999999999987 99999999999985 7
Q ss_pred HHH-HHHHHhccCCCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhhcc
Q 010050 168 EIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (519)
Q Consensus 168 D~~-~l~~~~~~~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (519)
|+. +|+. .. .+++|+||+.| +||+++++|||++||++++++|||||+++++|+++|++.
T Consensus 147 d~l~~Ll~---~~--~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~~l~~i~~~l 206 (216)
T PRK13576 147 EVLLPLLE---YE--NVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYKKVKQILNYL 206 (216)
T ss_pred hHHHHHhc---cc--CccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHHHHHHHHHHH
Confidence 665 6654 22 45889999999 999999999999999999999999999999999999865
No 19
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.2e-44 Score=349.92 Aligned_cols=206 Identities=15% Similarity=0.250 Sum_probs=173.1
Q ss_pred ccCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc--chHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 010050 5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG--KDLEIILTKKPLPVLIVYRPKWAGGLYEG 82 (519)
Q Consensus 5 ~~~~~~~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~--~~l~~l~~~~~~pii~T~R~~~eGG~~~~ 82 (519)
..-.+.|+||+||++++.++++.+++.+...|+|+||||+|+|.+.+.. ..+...++..++|+|||+|+.
T Consensus 15 ~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~R~~-------- 86 (229)
T PRK01261 15 VIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTYRGV-------- 86 (229)
T ss_pred EeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEEcCC--------
Confidence 3456889999999999999999999888878999999999999875432 122222333489999999943
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcc
Q 010050 83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (519)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~ 162 (519)
++ .++++.+++.+++|||||++...++ ..+..++|+|+||| ||+.++|.+++++|.++||||+|||+|
T Consensus 87 ~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~~gaDI~KiAvm 154 (229)
T PRK01261 87 DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAILDIMNEKNPDYVKVACN 154 (229)
T ss_pred CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 22 4788888887799999999874432 22357999999999 688899999999999999999999999
Q ss_pred cCCHhHHHHHHHH----hccCCCCEEEEecCccchhhhhccCCCCCccccccCCCCCCCCCCChHHHhhhhhcc
Q 010050 163 VNDITEIARIFQL----LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (519)
Q Consensus 163 ~~~~~D~~~l~~~----~~~~~~p~i~~~MG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (519)
|++.+|+.+++.. ..+.+.|+|+|+||+ ++||+++++|||++||+++++++||||+++++|+++++..
T Consensus 155 p~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~v~~l~~~~~~~ 226 (229)
T PRK01261 155 YNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPKRDYYESAFIKY 226 (229)
T ss_pred CCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCCHHHHHHHHHHh
Confidence 9999998876643 344578999999999 9999999999999999999999999999999999998753
No 20
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=321.77 Aligned_cols=460 Identities=14% Similarity=0.031 Sum_probs=364.4
Q ss_pred hcCCCEEEEEecCCCCCC-CcchHHHHHhcCCCcEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEecccc
Q 010050 34 AEGADVVEIRLDCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA 109 (519)
Q Consensus 34 ~~~~D~vElR~D~l~~~~-~~~~l~~l~~~~~~pii~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~~~vDiEl~~~ 109 (519)
+.+++++|.|.|-...++ +.+..........+|.++++|.+||||. .++...++..-++..++++.+|+|.|+...
T Consensus 118 snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~l 197 (595)
T KOG0692|consen 118 SNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPL 197 (595)
T ss_pred hhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhH
Confidence 345555555555544443 2222222233467899999999999998 788877765566777889999999999988
Q ss_pred chHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCHhHHHHHHHHhccCCCCEEEEecC
Q 010050 110 SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189 (519)
Q Consensus 110 ~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG 189 (519)
.++...+.....+..+||.+.|+.+.+| +-.+...+++.||||.|++.+...+.|+. ....++..++|+++.-||
T Consensus 198 t~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vss 272 (595)
T KOG0692|consen 198 TEFAAAVTAKGGNKSYVLDGVHRMQERP----IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSS 272 (595)
T ss_pred HHHHHHhhcCCCCceEEEecCcccccCC----chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehh
Confidence 8877666544445559999999999999 66778888889999999999999999997 555667778999999999
Q ss_pred ccchhhhhccCCCCCccccccCCC-C-CCCCCCChHHHhhhh--hcccccCCceEEeeccCCCcccCCHHHHHHHHHHcC
Q 010050 190 ERGLVSQLLSPKFNGALVYGSLKG-T-PVLGLPTVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVN 265 (519)
Q Consensus 190 ~~G~~sRi~~~~~gs~~ty~~~~~-~-sApGQ~~~~~l~~~~--~~~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~g 265 (519)
+.+..+|+++|.++.++||..++. + |+|+|...-.|.+.| ++.+....++.|+++|.|++|+.+|.+||.+|.+--
T Consensus 273 qy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~y 352 (595)
T KOG0692|consen 273 QYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASY 352 (595)
T ss_pred hHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccc
Confidence 999999999999999999999984 4 999999999999999 788888899999999999999999999999999998
Q ss_pred CCceEEecccCCHHHHHHhcCCCCCCEEE-eccCchHHHHhhhhccCHHHhhccceeEEEEecCCCeEEEeeccHHHHHH
Q 010050 266 YNGIYVPMFVDDLKKFFSTYSSPDFAGFS-VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASIT 344 (519)
Q Consensus 266 l~~~Y~~~~~~~~~~~~~~l~~~~~~G~~-VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~ 344 (519)
.++.|...-++..-.++......++.||+ |+.|||.++...+|++++.+.-+||+|++.++..|+...++|||..|-+-
T Consensus 353 fla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svv 432 (595)
T KOG0692|consen 353 FLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVV 432 (595)
T ss_pred cceeeeEecceeeeccccceecccccchHhhhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHH
Confidence 88888877766555555555556899999 99999999999999999999999999999977558899999999999999
Q ss_pred HHHHHHHhcCCCCCCCC-CC--CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccc
Q 010050 345 AIEDAIKERGYKNGTAS-FG--SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 421 (519)
Q Consensus 345 ~l~~~l~~~~~~~~~~~-~~--~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l 421 (519)
++...++. .+.++. .+ ...-.+...|+|.|+.++...+.-.+.+..++|.||+ +|+-++++..+. .+++|-
T Consensus 433 A~~~~~~s---~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~ae~~g~--~TydDh 506 (595)
T KOG0692|consen 433 ALFAGLRS---SGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVITPP-EKKLKLAEIDGS--LTYDDH 506 (595)
T ss_pred HHhhcccC---CCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEeCCc-hHhccchhhccc--cccccc
Confidence 98765431 111110 00 1112345778999999999999888888899999999 888888877532 123322
Q ss_pred cccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHh
Q 010050 422 LNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLF 501 (519)
Q Consensus 422 ~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw 501 (519)
. ....+.++-++++.+ +.+.+.+.....|+....|+|-+|.|+-|.+ ++.+.|.... -+|++.|+.+||+.+
T Consensus 507 r--~am~fsvLA~~~~~~--~~i~d~~ct~kt~p~y~~Vl~~~~~~kltga--eple~~a~kn--ssm~vigmr~agktt 578 (595)
T KOG0692|consen 507 R--MAMAFSVLAACADVP--ITINDPGCTRKTFPDYFQVLERITKHKLTGA--EPLESGAIKN--SSMFVIGMREAGKTT 578 (595)
T ss_pred c--chhhhhHHHhccCCC--ccccCCCccccccchHHHHHHHHhhcccccc--Chhhcccccc--ceeeeehhhhcCcee
Confidence 1 244567777788766 4444455555556666678999999999976 7777776554 899999999999999
Q ss_pred cCCCCCHHHHH
Q 010050 502 TGKEAPKEFMR 512 (519)
Q Consensus 502 ~g~~~~~~~~~ 512 (519)
+|++++.+.-.
T Consensus 579 igk~~akeL~~ 589 (595)
T KOG0692|consen 579 IGKPAAKELYW 589 (595)
T ss_pred cCccchHHhCe
Confidence 99999987543
No 21
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=99.95 E-value=1.3e-28 Score=201.95 Aligned_cols=81 Identities=40% Similarity=0.815 Sum_probs=75.0
Q ss_pred eccCCCcccCCHHHHHHHHHHcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhccCHHHhhccce
Q 010050 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV 320 (519)
Q Consensus 243 liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGav 320 (519)
|||+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|+|+|||||||+++++|+|++|+.|+.+|||
T Consensus 1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv 80 (83)
T PF08501_consen 1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV 80 (83)
T ss_dssp EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence 6999999999999999999999999999999996 99999999988999999999999999999999999999999999
Q ss_pred eEE
Q 010050 321 NTI 323 (519)
Q Consensus 321 NTi 323 (519)
|||
T Consensus 81 Ntv 83 (83)
T PF08501_consen 81 NTV 83 (83)
T ss_dssp SEE
T ss_pred ccC
Confidence 997
No 22
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.92 E-value=1.5e-24 Score=216.93 Aligned_cols=214 Identities=20% Similarity=0.318 Sum_probs=166.2
Q ss_pred EeeccCCCcccCCHHHHHHHHHHcCCCceEEec--cc--CCHHHHHHhcC-CCCCCEEEeccCchHHHHh--hhhccCHH
Q 010050 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYS-SPDFAGFSVGFPYKEAVMK--FCDEVHPL 313 (519)
Q Consensus 241 ~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~--~~--~~~~~~~~~l~-~~~~~G~~VT~P~K~~v~~--~~d~~~~~ 313 (519)
.-++|+.-+--.--.+|+++|+++|++..|.++ ++ +++.+.++.++ ++++.|++||+|||+.+.+ ++|++ +.
T Consensus 38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~ 116 (283)
T PRK14192 38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL 116 (283)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence 445563332223346899999999999999999 55 36888888885 4489999999999999999 99999 99
Q ss_pred HhhccceeEEEEecCCCe------EEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hhHHHHHH
Q 010050 314 AQAIAAVNTIIRRPSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG 386 (519)
Q Consensus 314 A~~iGavNTi~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGg-aarai~~~ 386 (519)
++.++++||+. +|+ ++|+||| .||++.|+.. +.+++||+|+|+|+|| +||++++.
T Consensus 117 aKDVdg~n~~n----~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~ 178 (283)
T PRK14192 117 AKDVDGVTCLG----FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMM 178 (283)
T ss_pred HHhcCCCCccc----cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHH
Confidence 99999999983 567 8999999 9999998652 3678999999999999 99999999
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecC
Q 010050 387 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 466 (519)
Q Consensus 387 L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~ 466 (519)
|...|+.|++++| +++.|++.+ .++|+|||||+ .|. +++.++++++.+|+|+.|+
T Consensus 179 L~~~gatVtv~~~---~t~~L~~~~---------------~~aDIvI~AtG---~~~----~v~~~~lk~gavViDvg~n 233 (283)
T PRK14192 179 LLNANATVTICHS---RTQNLPELV---------------KQADIIVGAVG---KPE----LIKKDWIKQGAVVVDAGFH 233 (283)
T ss_pred HHhCCCEEEEEeC---CchhHHHHh---------------ccCCEEEEccC---CCC----cCCHHHcCCCCEEEEEEEe
Confidence 9999999999999 455555432 46899999994 232 5888899999999999999
Q ss_pred CC------cCHHHHHHHHc-CC-c-eecc-----HHHHHHHHHHHHH
Q 010050 467 PR------KTRLLKDAEAA-GA-I-IVSG-----VEMFLRQAIGQFN 499 (519)
Q Consensus 467 P~------~T~ll~~A~~~-G~-~-~~~G-----l~mli~Qa~~qf~ 499 (519)
|. +-.+ +.+++. .+ . +=.| .-||+.+.+.+.+
T Consensus 234 ~~~~~~~GDvd~-~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~ 279 (283)
T PRK14192 234 PRDGGGVGDIEL-QGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAE 279 (283)
T ss_pred ecCCCCcccccH-HHhhccceEeCCCCCcChHHHHHHHHHHHHHHHH
Confidence 94 2222 222222 21 2 2233 3477777776654
No 23
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.91 E-value=1.6e-23 Score=191.85 Aligned_cols=152 Identities=38% Similarity=0.616 Sum_probs=126.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCc
Q 010050 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA 415 (519)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~ 415 (519)
||+.||.++++.. +.++++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++++++++...
T Consensus 1 td~~g~~~a~~~~-------------~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~ 67 (155)
T cd01065 1 TDGLGFVRALEEA-------------GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG 67 (155)
T ss_pred CCHHHHHHHHHhh-------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc
Confidence 8999999998752 244678999999999999999999999975 99999999999999998886431
Q ss_pred --cccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHHHH
Q 010050 416 --RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ 493 (519)
Q Consensus 416 --~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Q 493 (519)
....+..+ ...++|+||+|||.+..+ ....++....++++.+++|++|.|..|++.+++++.|+.+++|++||++|
T Consensus 68 ~~~~~~~~~~-~~~~~Dvvi~~~~~~~~~-~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~~~~q 145 (155)
T cd01065 68 IAIAYLDLEE-LLAEADLIINTTPVGMKP-GDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEMLVYQ 145 (155)
T ss_pred cceeecchhh-ccccCCEEEeCcCCCCCC-CCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHHHHHH
Confidence 12233333 356799999999998752 13334555567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 010050 494 AIGQFNLFTG 503 (519)
Q Consensus 494 a~~qf~lw~g 503 (519)
++.||++|||
T Consensus 146 ~~~~~~~~~~ 155 (155)
T cd01065 146 AAEAFELWTG 155 (155)
T ss_pred HHHHHHHhcC
Confidence 9999999997
No 24
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=99.66 E-value=1.7e-16 Score=142.46 Aligned_cols=98 Identities=39% Similarity=0.579 Sum_probs=79.3
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~---~~~~~~l~~~~~~~~divInat~~g~ 440 (519)
++++++++|+||||+||+++++|...|+ +|+|+|||.+|+++|++.++.. ..+++++.+ ...++|+||||||+||
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~-~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEE-ALQEADIVINATPSGM 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCH-HHHTESEEEE-SSTTS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHH-HHhhCCeEEEecCCCC
Confidence 6889999999999999999999999999 7999999999999999999543 456666654 3567999999999998
Q ss_pred CCCCCCCCCCcccccCC----cEEEEEecCCCcC
Q 010050 441 HPNTDRVPVSEETLRDY----QLVFDAVYTPRKT 470 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~----~~v~Di~Y~P~~T 470 (519)
. ++..+.+.+. .+++|+.+ |...
T Consensus 88 ~------~i~~~~~~~~~~~~~~v~Dla~-Pr~i 114 (135)
T PF01488_consen 88 P------IITEEMLKKASKKLRLVIDLAV-PRDI 114 (135)
T ss_dssp T------SSTHHHHTTTCHHCSEEEES-S-S-SB
T ss_pred c------ccCHHHHHHHHhhhhceecccc-CCCC
Confidence 5 3566666654 59999986 6543
No 25
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.62 E-value=9.8e-16 Score=149.25 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC---eEEEEeCC----HHHH-------
Q 010050 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FERA------- 404 (519)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~---~v~i~nRt----~~ka------- 404 (519)
..||..+++.. +.++++++++|+|||++|+++++.|...|+ +|+|+||+ .+++
T Consensus 9 lAG~~~al~~~-------------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~ 75 (226)
T cd05311 9 LAGLLNALKLV-------------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDK 75 (226)
T ss_pred HHHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHH
Confidence 35777776531 246889999999999999999999999997 59999999 5655
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCc-e
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-I 483 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~ 483 (519)
+.+++.++...... ++.+ .+.++|+|||+||.||.+. ...+.+.+..++||++ +|..|+++++|++.|++ +
T Consensus 76 ~~la~~~~~~~~~~-~l~~-~l~~~dvlIgaT~~G~~~~-----~~l~~m~~~~ivf~ls-nP~~e~~~~~A~~~ga~i~ 147 (226)
T cd05311 76 NEIAKETNPEKTGG-TLKE-ALKGADVFIGVSRPGVVKK-----EMIKKMAKDPIVFALA-NPVPEIWPEEAKEAGADIV 147 (226)
T ss_pred HHHHHHhccCcccC-CHHH-HHhcCCEEEeCCCCCCCCH-----HHHHhhCCCCEEEEeC-CCCCcCCHHHHHHcCCcEE
Confidence 55676664221111 2322 3456899999999888531 1122344778999866 99999999999999997 9
Q ss_pred eccHHHHHHHHHH
Q 010050 484 VSGVEMFLRQAIG 496 (519)
Q Consensus 484 ~~Gl~mli~Qa~~ 496 (519)
.+|..|+++|+--
T Consensus 148 a~G~~~~~~Q~nn 160 (226)
T cd05311 148 ATGRSDFPNQVNN 160 (226)
T ss_pred EeCCCCCccccce
Confidence 9999999999843
No 26
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=99.57 E-value=2e-14 Score=136.97 Aligned_cols=166 Identities=23% Similarity=0.226 Sum_probs=124.5
Q ss_pred EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
|-||-....+..+++.+.+. +.++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+.
T Consensus 3 G~~~ta~aav~~~~~~l~~~---------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~ 73 (194)
T cd01078 3 GSNTTAAAAVAAAGKALELM---------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR 73 (194)
T ss_pred CcHHHHHHHHHHHHHHHHHh---------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 56777777778777766522 35688999999996 999999999999999999999999999999988764
Q ss_pred C----Cc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHc----
Q 010050 413 G----AA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA---- 479 (519)
Q Consensus 413 ~----~~-----~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~---- 479 (519)
. .. .+.+++.+ ...++|+||+|||.|+... .......+++.+++|++|.|..++...+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~-~~~~~diVi~at~~g~~~~----~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~ 148 (194)
T cd01078 74 ARFGEGVGAVETSDDAARAA-AIKGADVVFAAGAAGVELL----EKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDR 148 (194)
T ss_pred hhcCCcEEEeeCCCHHHHHH-HHhcCCEEEECCCCCceec----hhhhcccCceeEEEEccCCCCCCcccccccCCceec
Confidence 1 11 11122222 3467899999999998511 11122334567999999999989887777766
Q ss_pred ------CCceeccHHHHHHHHHHHHHHhc--CCCCCHHHHHHH
Q 010050 480 ------GAIIVSGVEMFLRQAIGQFNLFT--GKEAPKEFMREI 514 (519)
Q Consensus 480 ------G~~~~~Gl~mli~Qa~~qf~lw~--g~~~~~~~~~~~ 514 (519)
|.....|+.|.++|++.+ |.|. ++..+.+.+.+.
T Consensus 149 ~g~~~~g~~~~~g~~~~~~~~~~a-e~~~~~~~~~~~~~~~~~ 190 (194)
T cd01078 149 EGKVPYGAIGVGGLKMKTHRACIA-KLFESNPLVLDAEEIYDL 190 (194)
T ss_pred CCCeEEEeeccchhHHHHHHHHHH-HHhhcCCeeechHHHHHH
Confidence 566679999999999877 8888 666776666553
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.42 E-value=2.3e-13 Score=137.31 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=95.7
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
..+++++++|+|+|++|++++..|...|++|+++||+.++.+... ..+.....++++.+ ...++|+||||+|.++.+.
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~g~~~~~~~~l~~-~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-EMGLIPFPLNKLEE-KVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeeecHHHHHH-HhccCCEEEECCChHHhCH
Confidence 578899999999999999999999999999999999988765543 34444445555554 4568999999999865321
Q ss_pred CCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCcee--ccHHHHH
Q 010050 444 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEMFL 491 (519)
Q Consensus 444 ~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~--~Gl~mli 491 (519)
. ..+.++++.+++|+.|+|..|+| +.|+++|++++ +|+.+.+
T Consensus 225 ---~--~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~~~~glPg~~ 268 (287)
T TIGR02853 225 ---D--VLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKALLAPGLPGIV 268 (287)
T ss_pred ---H--HHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEEEeCCCCccc
Confidence 1 11346788999999999999999 99999999977 8887654
No 28
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=99.35 E-value=2.3e-12 Score=132.61 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=99.5
Q ss_pred hhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHH-hCCC-
Q 010050 315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA- 392 (519)
Q Consensus 315 ~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~-~~G~- 392 (519)
..+|++|+++.+ ++.++|+|||+.|++.+.. +. ....++++|||+|++|++.+.+|. ..++
T Consensus 93 ~~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~ 155 (326)
T TIGR02992 93 SRTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIR 155 (326)
T ss_pred CCCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCcc
Confidence 356999999766 7899999999999998853 21 123578999999999999999997 4787
Q ss_pred eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEe-cCC
Q 010050 393 RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV-YTP 467 (519)
Q Consensus 393 ~v~i~nRt~~ka~~La~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~-Y~P 467 (519)
+|+|+||+.++++++++++.. ....++++++ ...++|+||+|||... | .+..++++++..+..+- |.|
T Consensus 156 ~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~-av~~aDiVvtaT~s~~-p-----~i~~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 156 SARIWARDSAKAEALALQLSSLLGIDVTAATDPRA-AMSGADIIVTTTPSET-P-----ILHAEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-HhccCCEEEEecCCCC-c-----EecHHHcCCCcEEEeeCCCCC
Confidence 899999999999999988742 2223344444 3568999999998632 2 25667899988887774 344
Q ss_pred C
Q 010050 468 R 468 (519)
Q Consensus 468 ~ 468 (519)
.
T Consensus 229 ~ 229 (326)
T TIGR02992 229 H 229 (326)
T ss_pred C
Confidence 4
No 29
>PRK08291 ectoine utilization protein EutC; Validated
Probab=99.33 E-value=3.1e-12 Score=131.83 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=98.1
Q ss_pred hhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHh-CCC-
Q 010050 315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA- 392 (519)
Q Consensus 315 ~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~-~G~- 392 (519)
..+|++|||+.+ +++|+|+|||+.|++.+.. +. ....++++|+|+|++|++.+.++.. .++
T Consensus 96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~ 158 (330)
T PRK08291 96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR 158 (330)
T ss_pred CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence 467999999766 7899999999999999853 21 1235789999999999999999985 577
Q ss_pred eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEe-cCC
Q 010050 393 RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV-YTP 467 (519)
Q Consensus 393 ~v~i~nRt~~ka~~La~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~-Y~P 467 (519)
+|+|+||+.++++++++++.. ....++++++ ...++|+||+|||... | .+..++++++..+..+- |.|
T Consensus 159 ~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~-al~~aDiVi~aT~s~~-p-----~i~~~~l~~g~~v~~vg~d~~ 231 (330)
T PRK08291 159 EVRVWARDAAKAEAYAADLRAELGIPVTVARDVHE-AVAGADIIVTTTPSEE-P-----ILKAEWLHPGLHVTAMGSDAE 231 (330)
T ss_pred EEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHH-HHccCCEEEEeeCCCC-c-----EecHHHcCCCceEEeeCCCCC
Confidence 899999999999999997742 2222344444 3567999999998742 2 25566788887776663 334
Q ss_pred C
Q 010050 468 R 468 (519)
Q Consensus 468 ~ 468 (519)
.
T Consensus 232 ~ 232 (330)
T PRK08291 232 H 232 (330)
T ss_pred C
Confidence 3
No 30
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=99.26 E-value=1.1e-11 Score=128.96 Aligned_cols=139 Identities=20% Similarity=0.304 Sum_probs=102.4
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
+++++++||||||.||+.++.+|...|+ +|+|+|||.+||++||++++..+.+++++.+ .+.++|+||.+|+... |.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~-~l~~~DvVissTsa~~-~i 252 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLE-ALAEADVVISSTSAPH-PI 252 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHH-hhhhCCEEEEecCCCc-cc
Confidence 4789999999999999999999999998 9999999999999999999988889998877 6788999999998743 22
Q ss_pred CCCCCCCccccc-CCcEEEEEecCCCcCH-------------------HHHHHHHcCCceeccHHHHHHHHHHHHHHhcC
Q 010050 444 TDRVPVSEETLR-DYQLVFDAVYTPRKTR-------------------LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 503 (519)
Q Consensus 444 ~~~~~l~~~~l~-~~~~v~Di~Y~P~~T~-------------------ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g 503 (519)
.....+...+-. +..+++|+. .|++.+ ..++-.+.+-....-.+.++++.+..|..|..
T Consensus 253 i~~~~ve~a~~~r~~~livDia-vPRdie~~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~ae~iIeee~~~~~~~l~ 331 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIA-VPRDVEPEVGELPNVFLYTIDDLEEIVEENLEARKEEAAKAEAIIEEELAEFMEWLK 331 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEec-CCCCCCccccCcCCeEEEehhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 124788886 354321 11122223345667788899999999999986
Q ss_pred CCC
Q 010050 504 KEA 506 (519)
Q Consensus 504 ~~~ 506 (519)
..-
T Consensus 332 ~~~ 334 (414)
T COG0373 332 KLE 334 (414)
T ss_pred Hhh
Confidence 543
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.26 E-value=8e-12 Score=126.72 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=94.9
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
..+.+++++|+|+|++|++++..|+.+|++|++++|+.++. +.++.++.....++++.+ ...++|+||||+|..+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~~~G~~~~~~~~l~~-~l~~aDiVI~t~p~~~--- 222 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARITEMGLSPFHLSELAE-EVGKIDIIFNTIPALV--- 222 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeeecHHHHHH-HhCCCCEEEECCChhh---
Confidence 45778999999999999999999999999999999998764 445566655555555544 4567999999998643
Q ss_pred CCCCCCCc---ccccCCcEEEEEecCCCcCHHHHHHHHcCCcee--ccHHHHH
Q 010050 444 TDRVPVSE---ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEMFL 491 (519)
Q Consensus 444 ~~~~~l~~---~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~--~Gl~mli 491 (519)
+.. +.++++.+++|+.|+|..|.| +.+++.|++++ +|+.+.+
T Consensus 223 -----i~~~~l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 223 -----LTKEVLSKMPPEALIIDLASKPGGTDF-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred -----hhHHHHHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEEEECCCCccC
Confidence 222 246788999999999999998 89999999987 8888776
No 32
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=99.24 E-value=3.3e-11 Score=127.23 Aligned_cols=133 Identities=13% Similarity=0.187 Sum_probs=94.5
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
++.+++++|+|+||||++++.+|...|+ +|+|+|||.++|++|+++++ ....+++++.+ ...++|+|||||+.+..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~-~l~~aDiVI~aT~a~~~- 255 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQ-LIKKADIIIAAVNVLEY- 255 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHH-HhccCCEEEECcCCCCe-
Confidence 5788999999999999999999999998 89999999999999999997 55567777655 46789999999987542
Q ss_pred CCCCCCCCccccc-CCcEEEEEecCCCc-------------------CHHHHHHHHcCCceeccHHHHHHHHHHHHHHhc
Q 010050 443 NTDRVPVSEETLR-DYQLVFDAVYTPRK-------------------TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFT 502 (519)
Q Consensus 443 ~~~~~~l~~~~l~-~~~~v~Di~Y~P~~-------------------T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~ 502 (519)
. +..+.+. ...+++|+. .|.+ ........+.....+.-.+.++.+.+..|.-|.
T Consensus 256 v-----i~~~~~~~~~~~~iDLa-vPRdidp~v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~ 329 (414)
T PRK13940 256 I-----VTCKYVGDKPRVFIDIS-IPQALDPKLGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKE 329 (414)
T ss_pred e-----ECHHHhCCCCeEEEEeC-CCCCCCccccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 113444443 1221 112222223333456678889999999999998
Q ss_pred CCC
Q 010050 503 GKE 505 (519)
Q Consensus 503 g~~ 505 (519)
...
T Consensus 330 ~~~ 332 (414)
T PRK13940 330 KAI 332 (414)
T ss_pred Hhc
Confidence 553
No 33
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=99.20 E-value=1.5e-11 Score=130.85 Aligned_cols=189 Identities=21% Similarity=0.292 Sum_probs=131.4
Q ss_pred chHHHHhhhhccCHHHhhccceeEEEEec-----CCCeEEEeeccHHHHHHH-----HHHHHHhcCCCCCCCCCCCCCCC
Q 010050 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRP-----SDGKLIGYNTDCEASITA-----IEDAIKERGYKNGTASFGSPLAG 368 (519)
Q Consensus 299 ~K~~v~~~~d~~~~~A~~iGavNTi~~~~-----~~g~l~G~NTD~~G~~~~-----l~~~l~~~~~~~~~~~~~~~~~~ 368 (519)
=+.+|+..|++....|+..|++|+++..- .-++..+++|+..+.-.+ ++.... . ..++.+
T Consensus 113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~--~--------~~~~~~ 182 (423)
T PRK00045 113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQ--I--------FGDLSG 182 (423)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHH--h--------hCCccC
Confidence 46788999999999999999999987310 135677777776553222 221100 0 014678
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 447 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~ 447 (519)
++++|+|+|++|+.++..|...|+ +|+++||+.++++++++.++....+++++.+ ...++|+||+||+... |
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVI~aT~s~~-~----- 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPE-ALAEADIVISSTGAPH-P----- 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHH-HhccCCEEEECCCCCC-c-----
Confidence 999999999999999999999998 8999999999999999998765555555544 4567999999998643 1
Q ss_pred CCCccccc--------CCcEEEEEecCCCcC-------------------HHHHHHHHcCCceeccHHHHHHHHHHHHHH
Q 010050 448 PVSEETLR--------DYQLVFDAVYTPRKT-------------------RLLKDAEAAGAIIVSGVEMFLRQAIGQFNL 500 (519)
Q Consensus 448 ~l~~~~l~--------~~~~v~Di~Y~P~~T-------------------~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~l 500 (519)
.+..++++ ...+++|+. .|.+. ...++..+.....+.-.+-++.+.+..|.-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~f~~ 334 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA-VPRDIEPEVGELPGVYLYDVDDLQEIVEENLAQRQEAAEKAEAIVEEEVAEFME 334 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC-CCCCCcccccccCCeEEEEHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13333332 235788887 44421 111222222334566778889999999999
Q ss_pred hcCCC
Q 010050 501 FTGKE 505 (519)
Q Consensus 501 w~g~~ 505 (519)
|....
T Consensus 335 ~~~~~ 339 (423)
T PRK00045 335 WLRSL 339 (423)
T ss_pred HHHhc
Confidence 98654
No 34
>PLN00203 glutamyl-tRNA reductase
Probab=98.81 E-value=1.6e-08 Score=109.53 Aligned_cols=133 Identities=17% Similarity=0.296 Sum_probs=92.9
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~---~~~~~~l~~~~~~~~divInat~~g~ 440 (519)
++.+++++|||+|++|++++.+|...|+ +|+|+||+.++++++++.++.. ..+++++.+ ...++|+||+||+.+.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~-al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA-CAAEADVVFTSTSSET 341 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH-HHhcCCEEEEccCCCC
Confidence 3778999999999999999999999998 8999999999999999988522 234444444 4577999999998754
Q ss_pred CCCCCCCCCCccccc----------CCcEEEEEecCCCc-------------------CHHHHHHHHcCCceeccHHHHH
Q 010050 441 HPNTDRVPVSEETLR----------DYQLVFDAVYTPRK-------------------TRLLKDAEAAGAIIVSGVEMFL 491 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~----------~~~~v~Di~Y~P~~-------------------T~ll~~A~~~G~~~~~Gl~mli 491 (519)
|. +..++++ ...+++|+.- |.+ ........+.+.....-.+.++
T Consensus 342 -pv-----I~~e~l~~~~~~~~~~~~~~~~IDLAv-PRdIdp~v~~l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II 414 (519)
T PLN00203 342 -PL-----FLKEHVEALPPASDTVGGKRLFVDISV-PRNVGACVSELESARVYNVDDLKEVVAANKEDRLRKAMEAQTII 414 (519)
T ss_pred -Ce-----eCHHHHHHhhhcccccCCCeEEEEeCC-CCCCccccccCCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 2222211 1135666642 321 1222333333344567788899
Q ss_pred HHHHHHHHHhcCCC
Q 010050 492 RQAIGQFNLFTGKE 505 (519)
Q Consensus 492 ~Qa~~qf~lw~g~~ 505 (519)
.+.+..|.-|....
T Consensus 415 ~ee~~~F~~w~~~~ 428 (519)
T PLN00203 415 REESKNFEAWRDSL 428 (519)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
No 35
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.76 E-value=2.8e-08 Score=105.67 Aligned_cols=133 Identities=24% Similarity=0.344 Sum_probs=95.5
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
.+.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++...++++++.+ ...++|+||+||+... |
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~-~l~~aDvVi~aT~s~~-~- 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEE-YLAEADIVISSTGAPH-P- 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHH-HHhhCCEEEECCCCCC-c-
Confidence 3678999999999999999999999996 9999999999999999998765555555554 4567999999997543 1
Q ss_pred CCCCCCCccccc-------CCcEEEEEecCCCcC-H--------------HHHHHHH----cCCceeccHHHHHHHHHHH
Q 010050 444 TDRVPVSEETLR-------DYQLVFDAVYTPRKT-R--------------LLKDAEA----AGAIIVSGVEMFLRQAIGQ 497 (519)
Q Consensus 444 ~~~~~l~~~~l~-------~~~~v~Di~Y~P~~T-~--------------ll~~A~~----~G~~~~~Gl~mli~Qa~~q 497 (519)
.+..++++ ...+++|+. .|.+. | -+++..+ .....+.-.+-++.+.+..
T Consensus 254 ----ii~~e~l~~~~~~~~~~~~viDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~ 328 (417)
T TIGR01035 254 ----IVSKEDVERALRERTRPLFIIDIA-VPRDVDPAVARLEGVFLYDVDDLQPVVEENLAERREEAEKAEEIVEEETAE 328 (417)
T ss_pred ----eEcHHHHHHHHhcCCCCeEEEEeC-CCCCCChhhcCcCCeEEEEHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 13434332 124888887 55421 1 1112222 2223456677889999999
Q ss_pred HHHhcCCC
Q 010050 498 FNLFTGKE 505 (519)
Q Consensus 498 f~lw~g~~ 505 (519)
|.-|....
T Consensus 329 f~~w~~~~ 336 (417)
T TIGR01035 329 FKQWLRSL 336 (417)
T ss_pred HHHHHHhc
Confidence 99998754
No 36
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.69 E-value=6.4e-07 Score=89.74 Aligned_cols=213 Identities=16% Similarity=0.223 Sum_probs=130.6
Q ss_pred eecc-CCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHH
Q 010050 242 GLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPL 313 (519)
Q Consensus 242 ~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~ 313 (519)
-++| +|-+++---.. -+..+++|++.....++-+ ++...++.+ .+++..|+-|-.|.-..+ ...++.++|.
T Consensus 38 i~vg~~~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~ 116 (286)
T PRK14175 38 ILVGNDGASQSYVRSK-KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE 116 (286)
T ss_pred EEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc
Confidence 3455 44444333222 3577999999877777642 566666666 577899999999965322 1122222221
Q ss_pred HhhccceeEEEEecCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hhHHHHHHH
Q 010050 314 AQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA 387 (519)
Q Consensus 314 A~~iGavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGg-aarai~~~L 387 (519)
+.+-..+..- -|++. | .-.--.|++..|+.. +.+++||+++|+|.|+ +|+.++..|
T Consensus 117 -KDVDGl~~~n----~g~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~l~Gk~vvVIGrs~~VG~pla~lL 178 (286)
T PRK14175 117 -KDVDGFHPIN----IGKLYIDEQTFVPCTPLGIMEILKHA-------------DIDLEGKNAVVIGRSHIVGQPVSKLL 178 (286)
T ss_pred -cCcccCCccc----hHhHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCchhHHHHHHHH
Confidence 1111111110 01111 1 112345666655431 3679999999999999 999999999
Q ss_pred HhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 388 KSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 388 ~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
...|+.|++++|... .|. + ...++|+||+|++. |+ .+..++++++.+|+|+-.+|
T Consensus 179 ~~~gatVtv~~s~t~---~l~--------------~-~~~~ADIVIsAvg~---p~----~i~~~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 179 LQKNASVTILHSRSK---DMA--------------S-YLKDADVIVSAVGK---PG----LVTKDVVKEGAVIIDVGNTP 233 (286)
T ss_pred HHCCCeEEEEeCCch---hHH--------------H-HHhhCCEEEECCCC---Cc----ccCHHHcCCCcEEEEcCCCc
Confidence 999999999998532 121 1 24568999999975 32 36778899999999999887
Q ss_pred C-------cCHHHHHHHHc-CC-c-eecc-----HHHHHHHHHHHHH
Q 010050 468 R-------KTRLLKDAEAA-GA-I-IVSG-----VEMFLRQAIGQFN 499 (519)
Q Consensus 468 ~-------~T~ll~~A~~~-G~-~-~~~G-----l~mli~Qa~~qf~ 499 (519)
. +..| ..+++. ++ . +=.| .-||+.+.+.+.+
T Consensus 234 ~~~gkl~GDvd~-~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~ 279 (286)
T PRK14175 234 DENGKLKGDVDY-DAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEK 279 (286)
T ss_pred CCCCCeecCccH-HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 2333 333333 22 2 2234 3488887777654
No 37
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.69 E-value=8e-08 Score=98.49 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=91.9
Q ss_pred CeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHh-CCC-eEEEEeCCHHHHHHH
Q 010050 330 GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSL 407 (519)
Q Consensus 330 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~-~G~-~v~i~nRt~~ka~~L 407 (519)
+.+++.-|=..+.+.+ +.|. ....++++|||+|++|++++.++.. .+. +|+|+||++++++++
T Consensus 102 ~~lT~~RTaa~sala~--~~La-------------~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 102 TELTARRTAAASALAA--SYLA-------------RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred cchhcchhHHHHHHHH--HHhC-------------CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 3567777766665443 1132 2346899999999999999987775 566 899999999999999
Q ss_pred HHHhcC---CccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecC--CCcCHHHHHHHHcCCc
Q 010050 408 ASDVMG---AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT--PRKTRLLKDAEAAGAI 482 (519)
Q Consensus 408 a~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~--P~~T~ll~~A~~~G~~ 482 (519)
++++.. .....++..+ ...++|+||+||+.. .| .+..++++++. ++|+++. |....+-.+..+++..
T Consensus 167 a~~~~~~g~~~~~~~~~~~-av~~aDIVi~aT~s~-~p-----vl~~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~ 238 (314)
T PRK06141 167 AAELRAQGFDAEVVTDLEA-AVRQADIISCATLST-EP-----LVRGEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASV 238 (314)
T ss_pred HHHHHhcCCceEEeCCHHH-HHhcCCEEEEeeCCC-CC-----EecHHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcE
Confidence 998742 1222333333 356799999999964 22 25667888877 7898875 2222232344445555
Q ss_pred eeccHH
Q 010050 483 IVSGVE 488 (519)
Q Consensus 483 ~~~Gl~ 488 (519)
+++=.+
T Consensus 239 ~vD~~~ 244 (314)
T PRK06141 239 YVDTRA 244 (314)
T ss_pred EEcCHH
Confidence 666654
No 38
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.59 E-value=5.3e-08 Score=99.70 Aligned_cols=98 Identities=26% Similarity=0.446 Sum_probs=75.2
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 444 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~ 444 (519)
+.+++++|+|+|.+|+.++..|...|+ +|+++||+.+++++++++++....+++++.+ ...++|+||.||+......
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVi~at~~~~~~~- 253 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLE-LLNEADVVISATGAPHYAK- 253 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHH-HHhcCCEEEECCCCCchHH-
Confidence 678999999999999999999999887 8999999999999999999875555555544 3567899999998643200
Q ss_pred CCCCCCcccc----cCCcEEEEEecCCCcC
Q 010050 445 DRVPVSEETL----RDYQLVFDAVYTPRKT 470 (519)
Q Consensus 445 ~~~~l~~~~l----~~~~~v~Di~Y~P~~T 470 (519)
+....+ .++.+++|+. .|...
T Consensus 254 ----~~~~~~~~~~~~~~~viDla-vPrdi 278 (311)
T cd05213 254 ----IVERAMKKRSGKPRLIVDLA-VPRDI 278 (311)
T ss_pred ----HHHHHHhhCCCCCeEEEEeC-CCCCC
Confidence 111111 2457999998 66653
No 39
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.57 E-value=2.2e-06 Score=86.29 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=127.4
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCC---
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD--- 329 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~--- 329 (519)
.+..+++|++..-..++- +++.+.++.+ .+++..|+-|-+|+-. ++|+ . +.+.+++--.-- |
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~ 124 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDE---A-RVLQAINPLKDV--DGFH 124 (301)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH---H-HHHhccCchhcc--CccC
Confidence 357889999987766653 2566666666 5778999999999742 1221 1 111222211100 1
Q ss_pred ----CeE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeC
Q 010050 330 ----GKL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 399 (519)
Q Consensus 330 ----g~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nR 399 (519)
|++ .|. -.--.|++.-|+.. +.+++||+++|||.| -+|+.++..|.+.|+.|+++||
T Consensus 125 ~~N~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 125 SENVGGLSQGRDVLTPCTPSGCLRLLEDT-------------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred hhhhhHHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence 111 111 12255666665542 368999999999997 7999999999999999999988
Q ss_pred CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC----------c
Q 010050 400 DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR----------K 469 (519)
Q Consensus 400 t~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~----------~ 469 (519)
+....++ ...++|+||.+++-. . .+..++++++.+|+|+..++. +
T Consensus 192 ~t~~l~e------------------~~~~ADIVIsavg~~---~----~v~~~~ik~GaiVIDvgin~~~~~g~~kl~GD 246 (301)
T PRK14194 192 RSTDAKA------------------LCRQADIVVAAVGRP---R----LIDADWLKPGAVVIDVGINRIDDDGRSRLVGD 246 (301)
T ss_pred CCCCHHH------------------HHhcCCEEEEecCCh---h----cccHhhccCCcEEEEecccccCCCCCcceecc
Confidence 6432111 235689999888642 1 356678999999999987752 1
Q ss_pred CHHHHHHHHcCC-ceec-cH-----HHHHHHHHHHHHHhcCC
Q 010050 470 TRLLKDAEAAGA-IIVS-GV-----EMFLRQAIGQFNLFTGK 504 (519)
Q Consensus 470 T~ll~~A~~~G~-~~~~-Gl-----~mli~Qa~~qf~lw~g~ 504 (519)
-.|-...+..++ .-++ |. -||++..+.+.+.|...
T Consensus 247 vdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~~ 288 (301)
T PRK14194 247 VDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHA 288 (301)
T ss_pred cchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 233222233333 2244 54 48999988888888643
No 40
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.55 E-value=1.4e-07 Score=97.97 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=90.9
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCC--c--ccccc---ccccCCCCccEEEECCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA--A--RPFED---ILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~--~--~~~~~---l~~~~~~~~divInat~~g~ 440 (519)
++++|||+|+.|+++++.|++.|. +|+|.+||.+++.++++..+.. . ++..+ +.+ .+++.|+|||+.|.-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~-li~~~d~VIn~~p~~~ 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVA-LIKDFDLVINAAPPFV 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHH-HHhcCCEEEEeCCchh
Confidence 579999999999999999999995 9999999999999998775322 2 22222 222 3567799999998532
Q ss_pred CCCCCCCCCCcccccCCcEEEEEecCCCc-CHHHHHHHHcCCceeccHH-------HHHHHHHHHHH
Q 010050 441 HPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVSGVE-------MFLRQAIGQFN 499 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~-T~ll~~A~~~G~~~~~Gl~-------mli~Qa~~qf~ 499 (519)
. ..+-+..++.+.-++|++|.+.. =.+-.+|+++|..++.|.+ .+..+++++|.
T Consensus 81 ~-----~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~ 142 (389)
T COG1748 81 D-----LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF 142 (389)
T ss_pred h-----HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh
Confidence 1 11334456778889999998655 4456688888877665543 56777777765
No 41
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.46 E-value=2.5e-06 Score=81.73 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcccc
Q 010050 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 418 (519)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~ 418 (519)
+.|...+++..+...- .+.+++|++++|+|.|.+|+.++..|.+.|++|++++++.++.+.+++.++...++.
T Consensus 6 g~Gv~~~~~~~~~~~~-------~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~ 78 (200)
T cd01075 6 AYGVFLGMKAAAEHLL-------GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP 78 (200)
T ss_pred HHHHHHHHHHHHHHhc-------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc
Confidence 5677777776655210 135789999999999999999999999999999999999999999988876544444
Q ss_pred ccccccCCCCccEEEECCCCCCCCCCCCCCCCccccc--CCcEEEEEecCCCcC-HHHHHHHHcCCceeccHHHHHHHHH
Q 010050 419 EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKT-RLLKDAEAAGAIIVSGVEMFLRQAI 495 (519)
Q Consensus 419 ~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~--~~~~v~Di~Y~P~~T-~ll~~A~~~G~~~~~Gl~mli~Qa~ 495 (519)
+++- ..++|++++|..-+. +..+.++ +..++++-.-+|... .--+.-+++|+.++|..-..-...+
T Consensus 79 ~~l~---~~~~Dv~vp~A~~~~--------I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~ 147 (200)
T cd01075 79 EEIY---SVDADVFAPCALGGV--------INDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLI 147 (200)
T ss_pred hhhc---cccCCEEEecccccc--------cCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCcCce
Confidence 4332 236899998776432 2222221 346788887777542 3333445688887773333222333
Q ss_pred HHHHHhcC
Q 010050 496 GQFNLFTG 503 (519)
Q Consensus 496 ~qf~lw~g 503 (519)
.++..|.|
T Consensus 148 ~~~~e~~~ 155 (200)
T cd01075 148 NVADELYG 155 (200)
T ss_pred eehhHHhC
Confidence 34555555
No 42
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.45 E-value=1.4e-06 Score=80.96 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=63.2
Q ss_pred CCCCCceEEEEccchh-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 364 ~~~~~k~vlvlGaGga-arai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
.++.+++++|+|+|++ |+.++..|.+.|++|+++||+.+.. .+ ...++|+||+||+...
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l-----------------~~-~l~~aDiVIsat~~~~-- 99 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNL-----------------KE-HTKQADIVIVAVGKPG-- 99 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhH-----------------HH-HHhhCCEEEEcCCCCc--
Confidence 4689999999999996 8889999999999999999985322 12 3456899999998632
Q ss_pred CCCCCCCCcccccCCcEEEEEecC
Q 010050 443 NTDRVPVSEETLRDYQLVFDAVYT 466 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di~Y~ 466 (519)
.+..+.++++.+++|+.-.
T Consensus 100 -----ii~~~~~~~~~viIDla~p 118 (168)
T cd01080 100 -----LVKGDMVKPGAVVIDVGIN 118 (168)
T ss_pred -----eecHHHccCCeEEEEccCC
Confidence 3667788888999999854
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.43 E-value=6.8e-06 Score=82.23 Aligned_cols=202 Identities=16% Similarity=0.239 Sum_probs=127.4
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+.++++|++.....++- +++.+.++.+ .+++..|+-|-.|+...+ ...++.++|. +.+-..+-.- -|
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~n----~g 129 (285)
T PRK10792 55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD-KDVDGFHPYN----VG 129 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCccChhh----Hh
Confidence 367899999987777753 3576777767 577899999999975321 1111111111 0000010000 01
Q ss_pred eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGg-aarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
++ .| .----.|++..|+.. +.+++||+++|+|-|. .|+.++.-|...|+.|+++++.-.
T Consensus 130 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~-- 194 (285)
T PRK10792 130 RLAQRIPLLRPCTPRGIMTLLERY-------------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK-- 194 (285)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--
Confidence 11 01 122345666665431 3689999999999998 999999999999999999987522
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHHH
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE 477 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~ 477 (519)
++.+ ...++|+||+|++. |. .+..++++++.+|+|+-.++. +..| +.++
T Consensus 195 ---------------~l~~-~~~~ADIvi~avG~---p~----~v~~~~vk~gavVIDvGin~~~~gk~~GDvd~-~~~~ 250 (285)
T PRK10792 195 ---------------NLRH-HVRNADLLVVAVGK---PG----FIPGEWIKPGAIVIDVGINRLEDGKLVGDVEF-ETAA 250 (285)
T ss_pred ---------------CHHH-HHhhCCEEEEcCCC---cc----cccHHHcCCCcEEEEcccccccCCCcCCCcCH-HHHH
Confidence 1222 24678999999864 22 367799999999999987652 2443 3333
Q ss_pred Hc-C-Cceec-c-----HHHHHHHHHHHHHHhcC
Q 010050 478 AA-G-AIIVS-G-----VEMFLRQAIGQFNLFTG 503 (519)
Q Consensus 478 ~~-G-~~~~~-G-----l~mli~Qa~~qf~lw~g 503 (519)
+. . +.-++ | ..||+...+.+.+.|..
T Consensus 251 ~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~ 284 (285)
T PRK10792 251 ERASWITPVPGGVGPMTVATLLENTLQACEEYHD 284 (285)
T ss_pred hhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 32 2 22223 3 45899999988888763
No 44
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.43 E-value=5.5e-07 Score=92.76 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCceEEEEccchhhHHHHHHHH-hCCC-eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~-~~G~-~v~i~nRt~~ka~~La~~~~~----~~~~~~~l~~~~~~~~divInat~~g~ 440 (519)
..++++|+|+|++|++.+.++. ..++ +|.|+||++++++++++++.. ....++++++ ...++|+||+|||.+.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADE-AIEEADIIVTVTNAKT 204 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEccCCCC
Confidence 4678999999999999998876 4588 999999999999999987642 2223444444 3567999999999763
Q ss_pred CCCCCCCCCCcccccCCcEEEEE-ecCCC
Q 010050 441 HPNTDRVPVSEETLRDYQLVFDA-VYTPR 468 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~~~v~Di-~Y~P~ 468 (519)
| .+. ++++++..|.-+ .|.|.
T Consensus 205 -p-----~i~-~~l~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 205 -P-----VFS-EKLKKGVHINAVGSFMPD 226 (325)
T ss_pred -c-----chH-HhcCCCcEEEecCCCCcc
Confidence 3 256 888888877655 24443
No 45
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.42 E-value=2.6e-06 Score=86.91 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=70.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~-~G~-~v~i~nRt~~ka~~La~~~~~~~~~--~~~l~~~~~~~~divInat~~g~~ 441 (519)
...++++|+|+|++|++.+.++.. .++ +|+|+||++++++++++++...... .+++++ ...++|+||+|||...
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~-av~~aDiVitaT~s~~- 200 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEA-IPEAVDLVVTATTSRT- 200 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHH-HhhcCCEEEEccCCCC-
Confidence 356899999999999999999975 677 8999999999999999998532111 233443 4578999999999643
Q ss_pred CCCCCCCCCcccccCCcEEEEE-ecCCCcC
Q 010050 442 PNTDRVPVSEETLRDYQLVFDA-VYTPRKT 470 (519)
Q Consensus 442 ~~~~~~~l~~~~l~~~~~v~Di-~Y~P~~T 470 (519)
|. +. .+++++..+.=+ .|.|...
T Consensus 201 Pl-----~~-~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 201 PV-----YP-EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred ce-----eC-ccCCCCCEEEecCCCCCCcc
Confidence 22 33 367777665555 3456543
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.37 E-value=1.6e-06 Score=90.91 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCC-CC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPL-GM 440 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~l~~~~~~~~divInat~~-g~ 440 (519)
+.+++++|+|+|.+|+.++..|..+|++|++++|+.++++.++..++... ...+++.+ ...++|+||||++. |.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~-~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIED-AVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHH-HHccCCEEEEccccCCC
Confidence 45678999999999999999999999999999999999998888776421 12233433 35679999999965 32
Q ss_pred CCCCCCCCCCcc---cccCCcEEEEEecCCCc
Q 010050 441 HPNTDRVPVSEE---TLRDYQLVFDAVYTPRK 469 (519)
Q Consensus 441 ~~~~~~~~l~~~---~l~~~~~v~Di~Y~P~~ 469 (519)
+. +..+..+ .++++.+++|+.+.|..
T Consensus 244 -~~--p~lit~~~l~~mk~g~vIvDva~d~GG 272 (370)
T TIGR00518 244 -KA--PKLVSNSLVAQMKPGAVIVDVAIDQGG 272 (370)
T ss_pred -CC--CcCcCHHHHhcCCCCCEEEEEecCCCC
Confidence 11 1123333 35788999999987663
No 47
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.34 E-value=1.4e-05 Score=80.11 Aligned_cols=202 Identities=17% Similarity=0.229 Sum_probs=123.7
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCCe
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g~ 331 (519)
+..+++|++.....++- +++.+.++.+ .+++..|+-|-.|+-..+ ...++.++|. +.+-..+- . +-|+
T Consensus 55 k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~-KDVDGl~~---~-N~g~ 129 (284)
T PRK14179 55 RSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK-KDVDGFHP---M-NTGH 129 (284)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-ccccccCH---h-hHHH
Confidence 67899999988777763 3566666666 577899999999975322 1111111111 00000000 0 0011
Q ss_pred EE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHH
Q 010050 332 LI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAK 405 (519)
Q Consensus 332 l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~ 405 (519)
+. | .----.|++.-|+.. +.+++||+++|+|. |-+|+.++..|.+.|+.|+++... .+
T Consensus 130 l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---t~ 193 (284)
T PRK14179 130 LWSGRPVMIPCTPAGIMEMFREY-------------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---TR 193 (284)
T ss_pred HhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---CC
Confidence 11 0 112245666655432 46899999999999 789999999999999999998321 11
Q ss_pred HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHHHH
Q 010050 406 SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAEA 478 (519)
Q Consensus 406 ~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~~ 478 (519)
. +.+ ...++|+||.+++. |. .+..++++++.+|+|+-.++. +-.|-...+.
T Consensus 194 ~--------------l~~-~~~~ADIVI~avg~---~~----~v~~~~ik~GavVIDvgin~~~~gkl~GDVdf~~v~~~ 251 (284)
T PRK14179 194 N--------------LAE-VARKADILVVAIGR---GH----FVTKEFVKEGAVVIDVGMNRDENGKLIGDVDFDEVAEV 251 (284)
T ss_pred C--------------HHH-HHhhCCEEEEecCc---cc----cCCHHHccCCcEEEEecceecCCCCeecCccHHHHHhh
Confidence 1 111 23568999988764 22 366788999999999987752 2233222222
Q ss_pred cCC-c-eeccH-----HHHHHHHHHHHHHhcC
Q 010050 479 AGA-I-IVSGV-----EMFLRQAIGQFNLFTG 503 (519)
Q Consensus 479 ~G~-~-~~~Gl-----~mli~Qa~~qf~lw~g 503 (519)
.++ . +=.|. -||+...+.+.+.|..
T Consensus 252 a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 283 (284)
T PRK14179 252 ASYITPVPGGVGPMTITMLMEQTYQAALRSLH 283 (284)
T ss_pred ccEecCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 332 2 33444 4889988888887753
No 48
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.32 E-value=5e-06 Score=68.47 Aligned_cols=80 Identities=30% Similarity=0.451 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCcc
Q 010050 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAAR 416 (519)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~ 416 (519)
.+.|.+..|+..... .+.++++++++|+|+|++|+.++..|.+.|. +|+++||
T Consensus 2 t~~~~~~~l~~~~~~---------~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r----------------- 55 (86)
T cd05191 2 TAAGAVALLKAAGKV---------TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----------------- 55 (86)
T ss_pred hhHHHHHHHHHHHHH---------hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------
Confidence 356777777765431 2356889999999999999999999999965 9999999
Q ss_pred ccccccccCCCCccEEEECCCCCCCCCCCCCCCCc---ccccCCcEEEEE
Q 010050 417 PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDA 463 (519)
Q Consensus 417 ~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~---~~l~~~~~v~Di 463 (519)
|++|++|+.+.. +.+ ..+.++.+++|+
T Consensus 56 -------------di~i~~~~~~~~-------~~~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 56 -------------DILVTATPAGVP-------VLEEATAKINEGAVVIDL 85 (86)
T ss_pred -------------CEEEEcCCCCCC-------chHHHHHhcCCCCEEEec
Confidence 899999987532 223 456778899986
No 49
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.27 E-value=2.8e-05 Score=77.95 Aligned_cols=201 Identities=18% Similarity=0.264 Sum_probs=124.1
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCCe
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g~ 331 (519)
+.++++|++.....++- +++.+.++.+ .+++..|+-|-.|+-..+ ...++.++|. +.+-..+..- -|+
T Consensus 55 k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g~ 129 (285)
T PRK14189 55 KACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE-KDVDGFHVAN----AGA 129 (285)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----hhH
Confidence 67899999987777664 3577777766 567899999999975211 1111111111 1111111000 011
Q ss_pred EE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-hHHHHHHHHhCCCeEEEEeCCHHHHH
Q 010050 332 LI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFERAK 405 (519)
Q Consensus 332 l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGga-arai~~~L~~~G~~v~i~nRt~~ka~ 405 (519)
+. |. -.--.|++.-|+.. +.++.||+|+|+|.|+. |+.++.-|...|+.|+++.+...
T Consensus 130 l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--- 193 (285)
T PRK14189 130 LMTGQPLFRPCTPYGVMKMLESI-------------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--- 193 (285)
T ss_pred hhCCCCCCcCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC---
Confidence 11 11 11245666665431 46899999999999987 99999999999999999865311
Q ss_pred HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHHHH
Q 010050 406 SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAEA 478 (519)
Q Consensus 406 ~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~~ 478 (519)
++.+ ...++|+||.|++. |+ .+..++++++.+|+|+-.++. +..|-...+.
T Consensus 194 --------------~l~~-~~~~ADIVV~avG~---~~----~i~~~~ik~gavVIDVGin~~~~gkl~GDVd~~~v~~~ 251 (285)
T PRK14189 194 --------------DLAA-HTRQADIVVAAVGK---RN----VLTADMVKPGATVIDVGMNRDDAGKLCGDVDFAGVKEV 251 (285)
T ss_pred --------------CHHH-HhhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEccccccCCCCeeCCccHHHHHhh
Confidence 1222 34679999998873 33 377899999999999987752 1222222222
Q ss_pred cCC-c-eeccH-----HHHHHHHHHHHHHhc
Q 010050 479 AGA-I-IVSGV-----EMFLRQAIGQFNLFT 502 (519)
Q Consensus 479 ~G~-~-~~~Gl-----~mli~Qa~~qf~lw~ 502 (519)
.++ . +=.|. -||+.+.+.+.+.+.
T Consensus 252 a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~ 282 (285)
T PRK14189 252 AGYITPVPGGVGPMTITMLLVNTIEAAERAA 282 (285)
T ss_pred ceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 333 2 33454 488888777766554
No 50
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=9.1e-06 Score=82.02 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=104.6
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEec-CCC--
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP-SDG-- 330 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~-~~g-- 330 (519)
+..+++|++..-..++- +++.+.++.+ .++++.|+-|-.|+-.. +| +. +. .|.|-... -||
T Consensus 55 k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~----~~---~~-~i---~~~I~p~KDVDGl~ 123 (296)
T PRK14188 55 KQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKH----LD---SE-AV---IQAIDPEKDVDGLH 123 (296)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC----CC---HH-HH---HhccCcccccccCC
Confidence 57899999976555543 3577777766 57789999999997522 11 11 11 12221110 011
Q ss_pred -----eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEc-cchhhHHHHHHHHhCCCeEEEE-e
Q 010050 331 -----KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIF-D 398 (519)
Q Consensus 331 -----~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlG-aGgaarai~~~L~~~G~~v~i~-n 398 (519)
++. | .----.|++.-|+.. +.+++||+|+|+| .|-+|+.++..|.+.|+.|+++ +
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~ 190 (296)
T PRK14188 124 VVNAGRLATGETALVPCTPLGCMMLLRRV-------------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHS 190 (296)
T ss_pred hhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence 110 1 011155666655432 3679999999999 7899999999999999999999 5
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 399 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 399 Rt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
||.+- .+ ...++|+||.+++.. . .+...+++++.+|+|+-.+.
T Consensus 191 rT~~l------------------~e-~~~~ADIVIsavg~~---~----~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 191 RTRDL------------------PA-VCRRADILVAAVGRP---E----MVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred CCCCH------------------HH-HHhcCCEEEEecCCh---h----hcchheecCCCEEEEcCCcc
Confidence 88531 11 234589999888742 1 35667799999999998765
No 51
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=2.2e-05 Score=78.62 Aligned_cols=183 Identities=19% Similarity=0.278 Sum_probs=114.5
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP 312 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~ 312 (519)
.-++| +|-+.+-- ..-.+.++++|++.....++-+ ++...++.+ .++++.|+-|-.|+...+ ...++.++|
T Consensus 43 ii~vg~d~aS~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p 121 (287)
T PRK14176 43 TILVGDDPASKMYV-RLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP 121 (287)
T ss_pred EEEECCCcchHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence 44556 44333322 2223678999999887777642 566777766 577899999999975322 111211111
Q ss_pred HHhhccceeEEEEecCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hhHHHHHH
Q 010050 313 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG 386 (519)
Q Consensus 313 ~A~~iGavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGg-aarai~~~ 386 (519)
. +.+-..+- . +-|++. | .----.|++..|+.. +.+++||+++|+|.|. .|+.++..
T Consensus 122 ~-KDVDGl~~---~-N~g~l~~g~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVGkPla~l 183 (287)
T PRK14176 122 A-KDADGFHP---Y-NMGKLMIGDEGLVPCTPHGVIRALEEY-------------GVDIEGKNAVIVGHSNVVGKPMAAM 183 (287)
T ss_pred c-ccccccCh---h-hhhhHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHH
Confidence 1 00000000 0 001111 1 112345666665431 4689999999999998 99999999
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecC
Q 010050 387 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 466 (519)
Q Consensus 387 L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~ 466 (519)
|...|+.|++++..-. ++.+ ...++|+||+|+.. |. .+..++++++.+|+|+-.+
T Consensus 184 L~~~~atVtv~hs~T~-----------------~l~~-~~~~ADIvv~AvG~---p~----~i~~~~vk~gavVIDvGin 238 (287)
T PRK14176 184 LLNRNATVSVCHVFTD-----------------DLKK-YTLDADILVVATGV---KH----LIKADMVKEGAVIFDVGIT 238 (287)
T ss_pred HHHCCCEEEEEeccCC-----------------CHHH-HHhhCCEEEEccCC---cc----ccCHHHcCCCcEEEEeccc
Confidence 9999999999984321 1122 24568999998865 32 3678899999999999876
Q ss_pred C
Q 010050 467 P 467 (519)
Q Consensus 467 P 467 (519)
.
T Consensus 239 ~ 239 (287)
T PRK14176 239 K 239 (287)
T ss_pred c
Confidence 4
No 52
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=9.2e-05 Score=74.19 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=121.1
Q ss_pred HHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+..+++|++.....++-+ ++.+.++.+ .++.+.|+-|-+|+...+ ...++.++|. +.+-..+..- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN-KDVDGFHPLN----IG 127 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChhh----HH
Confidence 3678999999877766642 576777777 577899999999975211 1112112211 1111111000 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 331 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
++ .|. ----.|++.-|+.. +.+++||+|+|+|.| -.|+.++..|.+.|+.|+++....
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--- 191 (285)
T PRK14191 128 KLCSQLDGFVPATPMGVMRLLKHY-------------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--- 191 (285)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---
Confidence 11 111 12345566655431 468999999999999 899999999999999999986422
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHHH
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE 477 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~ 477 (519)
+.|.+ ...++|+||.|++. |. .+..++++++.+|+|+-.++. +-.|-....
T Consensus 192 ~~l~~---------------~~~~ADIvV~AvG~---p~----~i~~~~vk~GavVIDvGi~~~~~gklvGDvd~e~v~~ 249 (285)
T PRK14191 192 KDLSF---------------YTQNADIVCVGVGK---PD----LIKASMVKKGAVVVDIGINRLNDGRLVGDVDFENVAP 249 (285)
T ss_pred HHHHH---------------HHHhCCEEEEecCC---CC----cCCHHHcCCCcEEEEeecccccCCceeccccHHHHhh
Confidence 12221 23568999998853 22 377889999999999987652 233312222
Q ss_pred HcCC-c-eeccH-----HHHHHHHHHHHHH
Q 010050 478 AAGA-I-IVSGV-----EMFLRQAIGQFNL 500 (519)
Q Consensus 478 ~~G~-~-~~~Gl-----~mli~Qa~~qf~l 500 (519)
..++ . +-.|. -||+++.+.+++.
T Consensus 250 ~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~ 279 (285)
T PRK14191 250 KASFITPVPGGVGPMTIVSLLENTLIAAEK 279 (285)
T ss_pred hccEEecCCCCChHHHHHHHHHHHHHHHHH
Confidence 2332 2 33343 4777777766543
No 53
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.18 E-value=5.2e-06 Score=85.35 Aligned_cols=109 Identities=20% Similarity=0.305 Sum_probs=79.0
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhcC-CccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMG-AARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~-~G~-~v~i~nRt~~ka~~La~~~~~-~~~~~~~l~~~~~~~~divInat~~g 439 (519)
.++++++++|+|| |.+|+.++..|.. .|+ +++++||+.++++.++.+++. ... ++.+ ...++|+||++|+..
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~---~l~~-~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL---SLEE-ALPEADIVVWVASMP 226 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH---hHHH-HHccCCEEEECCcCC
Confidence 4688999999999 7899999999985 477 999999999999999988752 222 2333 356789999999764
Q ss_pred CCCCCCCCCCCcccccCCcEEEEEecCCCc-CHHHHHHHHcCCceec
Q 010050 440 MHPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVS 485 (519)
Q Consensus 440 ~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~-T~ll~~A~~~G~~~~~ 485 (519)
.. ..+..+.+++..+++|+.+ |++ -| ...+ -|..+++
T Consensus 227 ~~-----~~I~~~~l~~~~~viDiAv-PRDVd~--~v~~-~~V~v~~ 264 (340)
T PRK14982 227 KG-----VEIDPETLKKPCLMIDGGY-PKNLDT--KVQG-PGIHVLK 264 (340)
T ss_pred cC-----CcCCHHHhCCCeEEEEecC-CCCCCc--ccCC-CCEEEEe
Confidence 31 1245566778889999986 443 22 1122 5666644
No 54
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.17 E-value=5.4e-06 Score=84.97 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=58.7
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCcccccccc----ccCCCCccEEEECCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDIL----NFQPEKGAILANATPLG 439 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~~~~l~----~~~~~~~divInat~~g 439 (519)
++.++++||||+|.||+.++.+|.+.|+ +|+|+|||.++ . +++++. + ...++|+||.||+..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~-----------~~~~~~~~~~~-~~~~~DvVIs~t~~T 237 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-L-----------PYRTVVREELS-FQDPYDVIFFGSSES 237 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-c-----------chhhhhhhhhh-cccCCCEEEEcCCcC
Confidence 5789999999999999999999999998 89999999853 1 122111 1 135689999986432
Q ss_pred CCCCCCCCCCCccccc--CCcEEEEEecCCCcC
Q 010050 440 MHPNTDRVPVSEETLR--DYQLVFDAVYTPRKT 470 (519)
Q Consensus 440 ~~~~~~~~~l~~~~l~--~~~~v~Di~Y~P~~T 470 (519)
..|.. .+..+.+. +..+++|+. .|.+.
T Consensus 238 as~~p---~i~~~~~~~~~~r~~iDLA-vPRdI 266 (338)
T PRK00676 238 AYAFP---HLSWESLADIPDRIVFDFN-VPRTF 266 (338)
T ss_pred CCCCc---eeeHHHHhhccCcEEEEec-CCCCC
Confidence 22320 02222221 124788886 45543
No 55
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=0.00012 Score=73.44 Aligned_cols=203 Identities=14% Similarity=0.266 Sum_probs=126.1
Q ss_pred HHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+.++++|++.....++-+ ++.+.++.+ .+++..|+-|-+|+...+ -..++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE-KDVDGFHPIN----VG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccCHhh----HH
Confidence 3678999999877777642 577777766 577899999999975321 1112111111 1111111100 01
Q ss_pred eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
++ .| .----.|++.-|+. .+.+++||+++|+|.+ -.|+.++.-|...|+.|+++.....
T Consensus 129 ~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~-- 193 (284)
T PRK14190 129 RMMLGQDTFLPCTPHGILELLKE-------------YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK-- 193 (284)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch--
Confidence 11 11 01234556555443 1468999999999997 5999999999999999999864321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHHH
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE 477 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~ 477 (519)
.| .+ ...++|+||.|++. |+ .+..++++++.+|+|+-.+.. +-.| +.++
T Consensus 194 -~l--------------~~-~~~~ADIvI~AvG~---p~----~i~~~~ik~gavVIDvGi~~~~~gkl~GDvd~-e~v~ 249 (284)
T PRK14190 194 -NL--------------AE-LTKQADILIVAVGK---PK----LITADMVKEGAVVIDVGVNRLENGKLCGDVDF-DNVK 249 (284)
T ss_pred -hH--------------HH-HHHhCCEEEEecCC---CC----cCCHHHcCCCCEEEEeeccccCCCCeeccCcH-HHHh
Confidence 11 11 23568999988854 32 478899999999999987652 1233 3333
Q ss_pred H-cCC--ceeccH-----HHHHHHHHHHHHHhcCC
Q 010050 478 A-AGA--IIVSGV-----EMFLRQAIGQFNLFTGK 504 (519)
Q Consensus 478 ~-~G~--~~~~Gl-----~mli~Qa~~qf~lw~g~ 504 (519)
+ .++ ++-.|. -||+..-+.+.+.|.|+
T Consensus 250 ~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 284 (284)
T PRK14190 250 EKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR 284 (284)
T ss_pred hhceEecCCCCCChHHHHHHHHHHHHHHHHHhhcC
Confidence 3 332 233454 48899888888887663
No 56
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=0.00016 Score=72.31 Aligned_cols=214 Identities=16% Similarity=0.254 Sum_probs=129.0
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhccCH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 312 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 312 (519)
.-++| +|-+++---. -.+..+++|++.....++-+ ++.+.++.+ .+++..|+-|-.|.-..+- ..++.++|
T Consensus 31 ii~vg~d~as~~Yv~~-k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p 109 (279)
T PRK14178 31 TVIVGDDPASQMYVRM-KHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILP 109 (279)
T ss_pred EEEeCCChhHHHHHHH-HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence 34455 4444433322 23678999999887777643 577777766 5788999999999753221 11111111
Q ss_pred HHhhccceeEEEEecCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHH
Q 010050 313 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFG 386 (519)
Q Consensus 313 ~A~~iGavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~ 386 (519)
. +.+-..+..- -|++. | .----.|++.-|+.. +.+++|++|+|+|.+ -.||.++..
T Consensus 110 ~-KDVDGl~~~n----~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~V~ViGrs~~vGrpla~l 171 (279)
T PRK14178 110 E-KDVDGFHPLN----LGRLVSGLPGFAPCTPNGIMTLLHEY-------------KISIAGKRAVVVGRSIDVGRPMAAL 171 (279)
T ss_pred c-cCcccCChhh----HHHHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCccccHHHHHH
Confidence 1 0000000000 01111 1 112345666655431 468999999999999 799999999
Q ss_pred HHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecC
Q 010050 387 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 466 (519)
Q Consensus 387 L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~ 466 (519)
|...|+.|+++.++... |.+ ...++|+||+|++. |. .+..++++++.+|+|+..+
T Consensus 172 L~~~~atVtv~hs~t~~---L~~---------------~~~~ADIvI~Avgk---~~----lv~~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 172 LLNADATVTICHSKTEN---LKA---------------ELRQADILVSAAGK---AG----FITPDMVKPGATVIDVGIN 226 (279)
T ss_pred HHhCCCeeEEEecChhH---HHH---------------HHhhCCEEEECCCc---cc----ccCHHHcCCCcEEEEeecc
Confidence 99999999999876432 221 23568999999953 22 3778899999999999887
Q ss_pred C------CcCHHHHHHHHc-CC-c-eecc-----HHHHHHHHHHHHH
Q 010050 467 P------RKTRLLKDAEAA-GA-I-IVSG-----VEMFLRQAIGQFN 499 (519)
Q Consensus 467 P------~~T~ll~~A~~~-G~-~-~~~G-----l~mli~Qa~~qf~ 499 (519)
. .+..| +.+++. ++ . +=.| .-||+...+.+.+
T Consensus 227 ~~~gkl~GDvdf-~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 272 (279)
T PRK14178 227 QVNGKLCGDVDF-DAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272 (279)
T ss_pred ccCCCCcCCccH-HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 23444 333333 22 2 2233 3477777666544
No 57
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.07 E-value=5.3e-06 Score=96.12 Aligned_cols=126 Identities=19% Similarity=0.223 Sum_probs=92.9
Q ss_pred CCceEEEEccchhhHHHHHHHHhCC-Ce-------------EEEEeCCHHHHHHHHHHh-cCCcc-----ccccccccCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRG-AR-------------VVIFDIDFERAKSLASDV-MGAAR-----PFEDILNFQP 426 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G-~~-------------v~i~nRt~~ka~~La~~~-~~~~~-----~~~~l~~~~~ 426 (519)
..|+|+|||||.+|+.++..|.+.. ++ |+|++++.++++++++.+ +...+ +.+++.+ ..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~-~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK-YV 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH-hh
Confidence 3679999999999999999998753 34 999999999999999987 43222 2233333 23
Q ss_pred CCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCc-CHHHHHHHHcCCceeccHH-------HHHHHHHHHH
Q 010050 427 EKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVSGVE-------MFLRQAIGQF 498 (519)
Q Consensus 427 ~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~-T~ll~~A~~~G~~~~~Gl~-------mli~Qa~~qf 498 (519)
.++|+||+|+|...+. ++-...++.+.-++|..|...+ ..+.++|+++|..+++|.. |+..+.+.++
T Consensus 647 ~~~DaVIsalP~~~H~-----~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~~ 721 (1042)
T PLN02819 647 SQVDVVISLLPASCHA-----VVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDDA 721 (1042)
T ss_pred cCCCEEEECCCchhhH-----HHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHhh
Confidence 5699999999986543 2445567777778899888444 5778899999988776554 6666666665
No 58
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.06 E-value=2.2e-06 Score=79.40 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=69.7
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
+++.+||.|-||++++..|.+.|++|+++||++++++++.+.-....-+..++ ..++|+|+.+.|.+.. .....
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~----~~~~dvvi~~v~~~~~--v~~v~ 75 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEA----AEQADVVILCVPDDDA--VEAVL 75 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHH----HHHBSEEEE-SSSHHH--HHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhH----hhcccceEeecccchh--hhhhh
Confidence 47899999999999999999999999999999999999987631111122222 3457999988875321 00000
Q ss_pred CC---cccccCCcEEEEEecC-CCcC-HHHHHHHHcCCcee
Q 010050 449 VS---EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV 484 (519)
Q Consensus 449 l~---~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~~ 484 (519)
.. ...+.++.+++|+... |..+ .+.+.++++|+.++
T Consensus 76 ~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 11 2345688999999876 4433 34445556777543
No 59
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=0.0001 Score=73.65 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=125.5
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCCC---
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--- 330 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--- 330 (519)
+..+++|++.....++- +++.+.++.+ .++++.|+-|-.|....+ | + -+.+.+++--.-- ||
T Consensus 53 k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i----~---~-~~i~~~I~p~KDV--DGl~~ 122 (282)
T PRK14182 53 KDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHV----D---E-RAVLDAISPAKDA--DGFHP 122 (282)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC----C---H-HHHHhccCcccCc--CCCCH
Confidence 67899999988777754 2566777666 577899999999975322 1 1 1122222221100 11
Q ss_pred ----eEE-E-----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeC
Q 010050 331 ----KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 399 (519)
Q Consensus 331 ----~l~-G-----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nR 399 (519)
++. | .-.--.|++.-|+.. +.+++||+++|+|-+ -.|+.++..|.+.|+.|++++.
T Consensus 123 ~n~g~l~~g~~~~~~PcTp~avi~ll~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs 189 (282)
T PRK14182 123 FNVGALSIGIAGVPRPCTPAGVMRMLDEA-------------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHS 189 (282)
T ss_pred hHHHHHhCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 111 1 112256777766542 367999999999998 5999999999999999999875
Q ss_pred CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHH
Q 010050 400 DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRL 472 (519)
Q Consensus 400 t~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~l 472 (519)
.-. .| .+ ...++|+||.|++. |. .+..++++++.+|+|+-.+.. +..|
T Consensus 190 ~T~---nl--------------~~-~~~~ADIvI~AvGk---~~----~i~~~~ik~gaiVIDvGin~~~~gkl~GDVd~ 244 (282)
T PRK14182 190 RTA---DL--------------AG-EVGRADILVAAIGK---AE----LVKGAWVKEGAVVIDVGMNRLADGKLVGDVEF 244 (282)
T ss_pred CCC---CH--------------HH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEeeceecCCCCeeCCCCH
Confidence 421 11 11 23568999988853 33 478899999999999976652 2233
Q ss_pred HHHHHHcCC-c-eeccH-----HHHHHHHHHHHHHhc
Q 010050 473 LKDAEAAGA-I-IVSGV-----EMFLRQAIGQFNLFT 502 (519)
Q Consensus 473 l~~A~~~G~-~-~~~Gl-----~mli~Qa~~qf~lw~ 502 (519)
-...+..++ . +-.|. -||+.+.+.+.+.|.
T Consensus 245 ~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~ 281 (282)
T PRK14182 245 AAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTA 281 (282)
T ss_pred HHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 222233333 2 33454 488888888877663
No 60
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.06 E-value=2.1e-06 Score=71.88 Aligned_cols=88 Identities=26% Similarity=0.260 Sum_probs=62.5
Q ss_pred eEEEEccchhhHHHHHHHHhCC---CeEEEE-eCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G---~~v~i~-nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
++.|||+|.+|.+++..|.+.| .+|+++ +|+++++++++++++......+ ..+ ...++|+||.|++....+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~advvilav~p~~~~~-- 76 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADD-NEE-AAQEADVVILAVKPQQLPE-- 76 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEE-HHH-HHHHTSEEEE-S-GGGHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCC-hHH-hhccCCEEEEEECHHHHHH--
Confidence 5789999999999999999999 689955 9999999999999875432211 112 2346899999998644322
Q ss_pred CCCCCcc--cccCCcEEEEEe
Q 010050 446 RVPVSEE--TLRDYQLVFDAV 464 (519)
Q Consensus 446 ~~~l~~~--~l~~~~~v~Di~ 464 (519)
+..+ .+.++.+++|+.
T Consensus 77 ---v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 77 ---VLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp ---HHHHHHHHHTTSEEEEES
T ss_pred ---HHHHHhhccCCCEEEEeC
Confidence 1112 245778888875
No 61
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=0.00017 Score=72.15 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=121.5
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCCe
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g~ 331 (519)
+.++++|++.....++- +++.+.++.+ .+++..|+-|-+|+...+ ...++.++|. +.+-..+-.- -|+
T Consensus 54 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g~ 128 (282)
T PRK14180 54 KACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE-KDVDGFHPTN----VGR 128 (282)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc-ccccccChhh----HHH
Confidence 57899999987776664 3566777766 577899999999975322 1122222221 1111111000 011
Q ss_pred E-EEe-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 332 L-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 332 l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
+ .|. -.--.|++.-|+.. +.+++||+++|+|-+ -.|+.++..|.+.|+.|+++.+.-.
T Consensus 129 l~~g~~~~~~PcTp~aii~lL~~y-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~-- 193 (282)
T PRK14180 129 LQLRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT-- 193 (282)
T ss_pred HhcCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC--
Confidence 1 221 12345666665542 368999999999998 5999999999999999999876321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC------cCHHHHHHHH
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR------KTRLLKDAEA 478 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~ 478 (519)
.| .+ ...++|+||.|++. |. .+..++++++.+|+|+-.+.. +-.|-...+.
T Consensus 194 -dl--------------~~-~~k~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~~~gkl~GDvd~~~v~~~ 250 (282)
T PRK14180 194 -DL--------------KS-HTTKADILIVAVGK---PN----FITADMVKEGAVVIDVGINHVDGKIVGDVDFAAVKDK 250 (282)
T ss_pred -CH--------------HH-HhhhcCEEEEccCC---cC----cCCHHHcCCCcEEEEecccccCCceeCCcCHHHHHhh
Confidence 11 11 23568999988864 32 377899999999999977652 2333222222
Q ss_pred cC-Cceec-cHH-----HHHHHHHHHHH
Q 010050 479 AG-AIIVS-GVE-----MFLRQAIGQFN 499 (519)
Q Consensus 479 ~G-~~~~~-Gl~-----mli~Qa~~qf~ 499 (519)
.+ +.-++ |.+ ||+...+.+.+
T Consensus 251 a~~iTPVPGGVGp~T~a~L~~Nl~~a~~ 278 (282)
T PRK14180 251 VAAITPVPGGVGPMTITELLYNTFQCAQ 278 (282)
T ss_pred ccEeccCCCChhHHHHHHHHHHHHHHHH
Confidence 23 23344 544 77777666654
No 62
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.02 E-value=1.9e-06 Score=90.80 Aligned_cols=123 Identities=24% Similarity=0.321 Sum_probs=82.7
Q ss_pred EEEEccchhhHHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHhcCC---c--ccc---ccccccCCCCccEEEECCCCCC
Q 010050 371 FVLAGAGGAGRALAFGAKSRG-A-RVVIFDIDFERAKSLASDVMGA---A--RPF---EDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 371 vlvlGaGgaarai~~~L~~~G-~-~v~i~nRt~~ka~~La~~~~~~---~--~~~---~~l~~~~~~~~divInat~~g~ 440 (519)
|+|+|+|.+|++++..|.+.+ . +|+|.+|+.++++++++.+... . ++. +++.+ ...++|+||||.+.-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAE-LLRGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHH-HHTTSSEEEE-SSGGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHH-HHhcCCEEEECCccch
Confidence 689999999999999999887 4 8999999999999999764221 1 122 22333 3567899999997431
Q ss_pred CCCCCCCCCCcccccCCcEEEEEec-CCCcCHHHHHHHHcCCceeccHH-------HHHHHHHHHHH
Q 010050 441 HPNTDRVPVSEETLRDYQLVFDAVY-TPRKTRLLKDAEAAGAIIVSGVE-------MFLRQAIGQFN 499 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~~~v~Di~Y-~P~~T~ll~~A~~~G~~~~~Gl~-------mli~Qa~~qf~ 499 (519)
..++-...++.+.-.+|..| .+....+-+.|+++|..++.|.+ +++.+++++|.
T Consensus 80 -----~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 80 -----GEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp -----HHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence 11233345666777889766 44456667888888888776643 88999999988
No 63
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.01 E-value=0.00025 Score=72.52 Aligned_cols=213 Identities=17% Similarity=0.187 Sum_probs=130.6
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 314 (519)
.-++| +|-+++--- .-.+..+++|++..-..++-+ ++.+.++.+ .+++..|+-|-.|+.. ++|+ .
T Consensus 91 iIlvGddpaS~~Yv~-~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~---~- 161 (345)
T PLN02897 91 VVLVGQQRDSQTYVR-NKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE---S- 161 (345)
T ss_pred EEEeCCChHHHHHHH-HHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-
Confidence 34556 444442221 223578899998776666542 566667666 5778999999999752 2221 1
Q ss_pred hhccceeEEEEecCCC-------eE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hh
Q 010050 315 QAIAAVNTIIRRPSDG-------KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GA 379 (519)
Q Consensus 315 ~~iGavNTi~~~~~~g-------~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-ga 379 (519)
+.+.+++--. + -|| ++ .|. ----.|++.-|+.. +.+++||+++|+|-+ -.
T Consensus 162 ~i~~~I~p~K-D-VDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-------------~i~l~GK~vvVIGRS~iV 226 (345)
T PLN02897 162 KILNMVRLEK-D-VDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRS-------------GVEIAGKNAVVIGRSNIV 226 (345)
T ss_pred HHHhccCccc-C-ccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccc
Confidence 1222222211 0 022 22 111 12245666665432 468999999999997 58
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcE
Q 010050 380 GRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQL 459 (519)
Q Consensus 380 arai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~ 459 (519)
|+.++.-|.+.|+.|+++...-.. +.+ ...++||||.|++. |+ .+..++++++.+
T Consensus 227 GkPla~LL~~~~ATVTicHs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~v~~d~vk~Gav 281 (345)
T PLN02897 227 GLPMSLLLQRHDATVSTVHAFTKD-----------------PEQ-ITRKADIVIAAAGI---PN----LVRGSWLKPGAV 281 (345)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCE
Confidence 999999999999999998753211 111 23568999988864 32 378899999999
Q ss_pred EEEEecCCCcC-------------HHHHHHHHcCC-c-eeccHH-----HHHHHHHHHHHHhc
Q 010050 460 VFDAVYTPRKT-------------RLLKDAEAAGA-I-IVSGVE-----MFLRQAIGQFNLFT 502 (519)
Q Consensus 460 v~Di~Y~P~~T-------------~ll~~A~~~G~-~-~~~Gl~-----mli~Qa~~qf~lw~ 502 (519)
|+|+-.++.+. .|-...+..++ . +=.|.+ ||+...+.+.+.|.
T Consensus 282 VIDVGin~~~~~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~ 344 (345)
T PLN02897 282 VIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF 344 (345)
T ss_pred EEEccccccccccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 99998775321 23222223333 2 334544 88888888877774
No 64
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.98 E-value=8.4e-06 Score=81.70 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=76.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc-ccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-PFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~-~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
+|.+||.|-||..++..|.+.|++++++||+++++.+++...|.... +..+ ...++|+||.+.+-+ +.+....
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~e----aa~~aDvVitmv~~~--~~V~~V~ 75 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAE----AAAEADVVITMLPDD--AAVRAVL 75 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHH----HHHhCCEEEEecCCH--HHHHHHH
Confidence 68899999999999999999999999999999998888777665432 2212 345689999777643 1111111
Q ss_pred CCc----ccccCCcEEEEEecC-CCcC-HHHHHHHHcCCcee
Q 010050 449 VSE----ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV 484 (519)
Q Consensus 449 l~~----~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~~ 484 (519)
+.+ +.++++.+++|++.. |..+ .+.+.++++|+..+
T Consensus 76 ~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred hCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 221 234689999999876 5443 45556666776543
No 65
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=0.00027 Score=70.77 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=122.1
Q ss_pred HHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCCe
Q 010050 259 PTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g~ 331 (519)
+..+++|++.....++-+ ++.+.++.+ .++...|+-|-.|.-..+ ...++.++|. +.+-..+..- -|+
T Consensus 54 k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~N----~g~ 128 (284)
T PRK14170 54 KRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD-KDVDGFHPVN----VGN 128 (284)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcccCChhh----hhH
Confidence 578899999877666642 566666666 577899999999975321 1111111111 1111111000 011
Q ss_pred E-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHH
Q 010050 332 L-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAK 405 (519)
Q Consensus 332 l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~ 405 (519)
+ .|. ----.|++.-|+.. +.++.||+|+|+|-+ -.|+.++.-|.+.|+.|+++...-.
T Consensus 129 l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~--- 192 (284)
T PRK14170 129 LFIGKDSFVPCTPAGIIELIKST-------------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTK--- 192 (284)
T ss_pred HhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC---
Confidence 1 110 11256666665532 468999999999998 5899999999999999999865321
Q ss_pred HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHHHH
Q 010050 406 SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAEA 478 (519)
Q Consensus 406 ~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~~ 478 (519)
++.+ ...++||||.|++. |. .+..++++++.+|+|+-.+.. +-.|-...+.
T Consensus 193 --------------~l~~-~~~~ADIvI~AvG~---~~----~i~~~~vk~GavVIDvGin~~~~gkl~GDvdfe~~~~~ 250 (284)
T PRK14170 193 --------------DLPQ-VAKEADILVVATGL---AK----FVKKDYIKPGAIVIDVGMDRDENNKLCGDVDFDDVVEE 250 (284)
T ss_pred --------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccCcccCCCCeecccchHHHHhh
Confidence 1112 24568999988864 22 377899999999999987752 1233222222
Q ss_pred cCC-c-eeccHH-----HHHHHHHHHHHHhc
Q 010050 479 AGA-I-IVSGVE-----MFLRQAIGQFNLFT 502 (519)
Q Consensus 479 ~G~-~-~~~Gl~-----mli~Qa~~qf~lw~ 502 (519)
.++ . +=.|.+ ||+...+.+.+.+.
T Consensus 251 a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~ 281 (284)
T PRK14170 251 AGFITPVPGGVGPMTITMLLANTLKAAKRIW 281 (284)
T ss_pred ccEecCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 332 2 334544 77777777766543
No 66
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=0.00037 Score=70.33 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=124.4
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+..+++|++.....++- +++.+.++.+ .+++..|+-|-+|+-..+ -..++.++|. +.+-..+..- -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 129 (297)
T PRK14168 55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD-KDVDGFHPVN----VG 129 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-ccccccChhh----HH
Confidence 367889999976655543 3577777777 577899999999964211 1111111111 1111111100 01
Q ss_pred eE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhC----CCeEEEEe
Q 010050 331 KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFD 398 (519)
Q Consensus 331 ~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~----G~~v~i~n 398 (519)
++ .|. -.--.|++.-|+.. +.+++||+|+|+|.+ -.|+.++.-|.+. ++.|+++.
T Consensus 130 ~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 130 RLMIGGDEVKFLPCTPAGIQEMLVRS-------------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred HHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 11 111 12256666665432 468999999999997 5999999999988 67999986
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC----------
Q 010050 399 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR---------- 468 (519)
Q Consensus 399 Rt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~---------- 468 (519)
+.-. ++.+ ...++||||.|++. |. .+..++++++.+|+|+-.+..
T Consensus 197 s~T~-----------------~l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~g~~~ 251 (297)
T PRK14168 197 TRSK-----------------NLAR-HCQRADILIVAAGV---PN----LVKPEWIKPGATVIDVGVNRVGTNESTGKAI 251 (297)
T ss_pred CCCc-----------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEecCCCccCccccCCCcc
Confidence 4311 1111 23568999988854 32 478899999999999965531
Q ss_pred ---cCHHHHHHHH-cCC--ceeccH-----HHHHHHHHHHHHHhcC
Q 010050 469 ---KTRLLKDAEA-AGA--IIVSGV-----EMFLRQAIGQFNLFTG 503 (519)
Q Consensus 469 ---~T~ll~~A~~-~G~--~~~~Gl-----~mli~Qa~~qf~lw~g 503 (519)
+-.| +.+++ .++ ++=.|. -||++..+.+.+.|.|
T Consensus 252 ~~GDVdf-e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 296 (297)
T PRK14168 252 LSGDVDF-DAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLS 296 (297)
T ss_pred eeccccH-HHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 1222 23333 232 233444 4999999999999986
No 67
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=0.00019 Score=71.68 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=105.8
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCCC---
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--- 330 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--- 330 (519)
+.++++|++.....++- +++.+.++.+ .+++..|.-|-+|+... +| + -+.+.+++--.-- ||
T Consensus 55 k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~---~-~~i~~~I~p~KDV--DGl~~ 124 (278)
T PRK14172 55 KVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKH----LD---E-KKITNKIDANKDI--DCLTF 124 (278)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CC---H-HHHHhccCccccc--CccCH
Confidence 67899999988777764 3566666666 47789999999997532 21 1 1122222221100 11
Q ss_pred ----eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCC
Q 010050 331 ----KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDID 400 (519)
Q Consensus 331 ----~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt 400 (519)
++ .| .----.|+++-|+.. +.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++...
T Consensus 125 ~n~g~l~~g~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~ 191 (278)
T PRK14172 125 ISVGKFYKGEKCFLPCTPNSVITLIKSL-------------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK 191 (278)
T ss_pred hhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC
Confidence 11 11 112345566655431 368999999999997 58999999999999999999753
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 401 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 401 ~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
-. ++.+ ...++||||.|++. |+ .+..++++++.+|+|+-.++
T Consensus 192 T~-----------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 192 TK-----------------NLKE-VCKKADILVVAIGR---PK----FIDEEYVKEGAIVIDVGTSS 233 (278)
T ss_pred CC-----------------CHHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCcEEEEeeccc
Confidence 11 1111 23568999988864 32 37889999999999996554
No 68
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=0.00049 Score=68.90 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=122.3
Q ss_pred HHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+.++++|++.....++-+ ++...++.+ .++++.|+-|-.|+...+ ...++.++|. +.+-..+..- -|
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 126 (282)
T PRK14169 52 QRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD-KDVDGFSPVS----VG 126 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----hH
Confidence 4678999999877777642 566666666 577899999999976322 1122222221 1111111100 01
Q ss_pred eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEe-CCHHH
Q 010050 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD-IDFER 403 (519)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~n-Rt~~k 403 (519)
++. | .-.--.|++.-|+.. +.+++||+++|+|-+ -.|+.++.-|...|+.|+++. ||.+
T Consensus 127 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~- 192 (282)
T PRK14169 127 RLWANEPTVVASTPYGIMALLDAY-------------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRN- 192 (282)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCC-
Confidence 111 1 122345666655432 468999999999998 589999999999999999996 4422
Q ss_pred HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-------cCHHHHHH
Q 010050 404 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDA 476 (519)
Q Consensus 404 a~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A 476 (519)
| .+ ...++||||.|++. |+ .+..++++++.+|+|+-.++. +-.|-...
T Consensus 193 ---l--------------~~-~~~~ADIvI~AvG~---p~----~i~~~~vk~GavVIDvGin~~~~gkl~GDVd~~~v~ 247 (282)
T PRK14169 193 ---L--------------KQ-LTKEADILVVAVGV---PH----FIGADAVKPGAVVIDVGISRGADGKLLGDVDEAAVA 247 (282)
T ss_pred ---H--------------HH-HHhhCCEEEEccCC---cC----ccCHHHcCCCcEEEEeeccccCCCCeeecCcHHHHH
Confidence 1 11 23568999988864 32 377899999999999987762 22232222
Q ss_pred HHcCC--ceecc-----HHHHHHHHHHHHH
Q 010050 477 EAAGA--IIVSG-----VEMFLRQAIGQFN 499 (519)
Q Consensus 477 ~~~G~--~~~~G-----l~mli~Qa~~qf~ 499 (519)
+..++ ++=.| .-||+...+.+.+
T Consensus 248 ~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 277 (282)
T PRK14169 248 PIASAITPVPGGVGPMTIASLMAQTVTLAK 277 (282)
T ss_pred hhccEecCCCCCcHHHHHHHHHHHHHHHHH
Confidence 33333 23345 3477777766543
No 69
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.90 E-value=5e-05 Score=69.62 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
+..+.||+++|+|.|..|+.+|..|+.+|++|+|+.+++-++-+-+. -|.+..+++ + ....+|++|.||... .
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~-dGf~v~~~~---~-a~~~adi~vtaTG~~--~ 90 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM-DGFEVMTLE---E-ALRDADIFVTATGNK--D 90 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH-TT-EEE-HH---H-HTTT-SEEEE-SSSS--S
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh-cCcEecCHH---H-HHhhCCEEEECCCCc--c
Confidence 46789999999999999999999999999999999999987644332 133333333 3 456799999998531 1
Q ss_pred CCCCCCCCcc---cccCCcEEEEEecCCCcCHH
Q 010050 443 NTDRVPVSEE---TLRDYQLVFDAVYTPRKTRL 472 (519)
Q Consensus 443 ~~~~~~l~~~---~l~~~~~v~Di~Y~P~~T~l 472 (519)
-+..+ .++++.++.++-..+.+..+
T Consensus 91 -----vi~~e~~~~mkdgail~n~Gh~d~Eid~ 118 (162)
T PF00670_consen 91 -----VITGEHFRQMKDGAILANAGHFDVEIDV 118 (162)
T ss_dssp -----SB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred -----ccCHHHHHHhcCCeEEeccCcCceeEee
Confidence 13333 46788899988877776654
No 70
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.90 E-value=0.0006 Score=70.11 Aligned_cols=197 Identities=21% Similarity=0.255 Sum_probs=122.8
Q ss_pred HHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCC----
Q 010050 259 PTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD---- 329 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~---- 329 (519)
+..+++|++..-..++-+ ++.+.++.+ .+++..|+-|-.|+... +|+ . +.+.+++--. + -|
T Consensus 126 K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~----id~---~-~i~~aI~P~K-D-VDGl~p 195 (364)
T PLN02616 126 KACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSH----MDE---Q-NILNAVSIEK-D-VDGFHP 195 (364)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCccc-C-cccCCh
Confidence 578999998765555432 566677666 57789999999997532 111 1 1112222111 0 01
Q ss_pred ---CeEE-E------eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEe
Q 010050 330 ---GKLI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD 398 (519)
Q Consensus 330 ---g~l~-G------~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~n 398 (519)
|++. | .----.|++.-|+.. +.+++||+|+|+|-+ -.|+.++.-|.+.|+.|+++.
T Consensus 196 ~N~G~L~~g~~~~~f~PCTp~avielL~~y-------------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicH 262 (364)
T PLN02616 196 LNIGRLAMRGREPLFVPCTPKGCIELLHRY-------------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH 262 (364)
T ss_pred hhhHHHhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeC
Confidence 1221 1 012245666665542 368999999999997 599999999999999999987
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCc---------
Q 010050 399 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK--------- 469 (519)
Q Consensus 399 Rt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~--------- 469 (519)
..-. ++.+ ...++||||.|++. |+ .+..++++++.+|+|+-.++.+
T Consensus 263 s~T~-----------------nl~~-~~r~ADIVIsAvGk---p~----~i~~d~vK~GAvVIDVGIn~~~~~~~~~g~k 317 (364)
T PLN02616 263 SRTK-----------------NPEE-ITREADIIISAVGQ---PN----MVRGSWIKPGAVVIDVGINPVEDASSPRGYR 317 (364)
T ss_pred CCCC-----------------CHHH-HHhhCCEEEEcCCC---cC----cCCHHHcCCCCEEEeccccccccccccCCCe
Confidence 5321 1112 24668999988864 32 3788999999999999766421
Q ss_pred ----CHHHHHHHHcCC--ceeccHH-----HHHHHHHHHHHHhcC
Q 010050 470 ----TRLLKDAEAAGA--IIVSGVE-----MFLRQAIGQFNLFTG 503 (519)
Q Consensus 470 ----T~ll~~A~~~G~--~~~~Gl~-----mli~Qa~~qf~lw~g 503 (519)
-.|-...+..++ ++=.|.+ ||+..-+.+.+.+.+
T Consensus 318 lvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~ 362 (364)
T PLN02616 318 LVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHN 362 (364)
T ss_pred EEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 133222223333 2445554 788877777665543
No 71
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=0.00023 Score=71.43 Aligned_cols=166 Identities=18% Similarity=0.250 Sum_probs=106.4
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
-+.++++|++.....++- +++.+.++.+ .+++..|+-|-+|+...+ -..++.++|. +.+-..+-. +-|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~-KDVDGl~~~----N~g 128 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS-KDIDGFHPL----NVG 128 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccccCCcc----chh
Confidence 367899999987777764 2566666666 577899999999976321 1111111111 000001000 012
Q ss_pred eEE-Ee-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeC-CHH
Q 010050 331 KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI-DFE 402 (519)
Q Consensus 331 ~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nR-t~~ 402 (519)
++. |. ----.|++.-|+.. +.+++||+++|+|-+ -.|+.++.-|.+.|+.|++++. |.+
T Consensus 129 ~l~~g~~~~~~PcTp~av~~lL~~y-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~ 195 (288)
T PRK14171 129 YLHSGISQGFIPCTALGCLAVIKKY-------------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHN 195 (288)
T ss_pred hhhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC
Confidence 221 11 11245666655432 368999999999998 5899999999999999999884 422
Q ss_pred HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 403 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 403 ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
| .+ ...++||||.|++. |+ .+..++++++.+|+|+-.+.
T Consensus 196 ----L--------------~~-~~~~ADIvV~AvGk---p~----~i~~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 196 ----L--------------SS-ITSKADIVVAAIGS---PL----KLTAEYFNPESIVIDVGINR 234 (288)
T ss_pred ----H--------------HH-HHhhCCEEEEccCC---CC----ccCHHHcCCCCEEEEeeccc
Confidence 1 11 23568999988763 33 47789999999999998775
No 72
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.87 E-value=0.00055 Score=68.72 Aligned_cols=209 Identities=17% Similarity=0.227 Sum_probs=128.4
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 314 (519)
.-++| +|-+++---.. .+..+++|++.....++- +++.+.++.+ .+++..|+-|-.|+-.. +| +.
T Consensus 36 ii~vg~d~as~~Yv~~k-~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id---~~- 106 (286)
T PRK14184 36 VILVGEDPASQVYVRNK-ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LD---SQ- 106 (286)
T ss_pred EEEeCCChhHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CC---HH-
Confidence 33455 44444332222 357899999988777664 3566777766 57789999999997532 22 11
Q ss_pred hhccceeEEEEecCCCeEEEee-------------ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhh
Q 010050 315 QAIAAVNTIIRRPSDGKLIGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAG 380 (519)
Q Consensus 315 ~~iGavNTi~~~~~~g~l~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaa 380 (519)
+.+.+++.-. + -|| ++-+| .--.|++.-|+.. +.+++||+++|+|-+ -.|
T Consensus 107 ~i~~~I~p~K-D-VDG-l~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG 170 (286)
T PRK14184 107 RCLELIDPAK-D-VDG-FHPENMGRLALGLPGFRPCTPAGVMTLLERY-------------GLSPAGKKAVVVGRSNIVG 170 (286)
T ss_pred HHHhccCccc-C-ccc-CCHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccch
Confidence 1222222211 0 011 11111 2345666665542 468999999999998 599
Q ss_pred HHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccC
Q 010050 381 RALAFGAKS----RGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRD 456 (519)
Q Consensus 381 rai~~~L~~----~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~ 456 (519)
+.++..|.+ .++.|+++..+... |. + ...++|+||.|++. |. .+..+++++
T Consensus 171 ~Pla~lL~~~~~~~~AtVt~~hs~t~~---l~--------------~-~~~~ADIVI~AvG~---p~----li~~~~vk~ 225 (286)
T PRK14184 171 KPLALMLGAPGKFANATVTVCHSRTPD---LA--------------E-ECREADFLFVAIGR---PR----FVTADMVKP 225 (286)
T ss_pred HHHHHHHhCCcccCCCEEEEEeCCchh---HH--------------H-HHHhCCEEEEecCC---CC----cCCHHHcCC
Confidence 999999998 78899998764321 21 1 23568999988843 33 377899999
Q ss_pred CcEEEEEecCCC------cCHHHHHHHHcCC-c-eeccH-----HHHHHHHHHHHH
Q 010050 457 YQLVFDAVYTPR------KTRLLKDAEAAGA-I-IVSGV-----EMFLRQAIGQFN 499 (519)
Q Consensus 457 ~~~v~Di~Y~P~------~T~ll~~A~~~G~-~-~~~Gl-----~mli~Qa~~qf~ 499 (519)
+.+|+|+-.++. +-.|-...+..++ . +=.|. -||+.+.+.+.+
T Consensus 226 GavVIDVGi~~~~~~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~ 281 (286)
T PRK14184 226 GAVVVDVGINRTDDGLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281 (286)
T ss_pred CCEEEEeeeeccCCCccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHH
Confidence 999999987752 3343232233333 2 33443 478887776654
No 73
>PRK06046 alanine dehydrogenase; Validated
Probab=97.87 E-value=4.6e-05 Score=78.62 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=75.3
Q ss_pred CceEEEEccchhhHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~-~G~-~v~i~nRt~~ka~~La~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~ 441 (519)
-+++.|+|+|+.|+..+.++.. .++ +|.|++|+.++++++++++... ....+++++ ... +|+|++|||...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEE-ACD-CDILVTTTPSRK- 205 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-Hhh-CCEEEEecCCCC-
Confidence 4789999999999999999984 467 8999999999999999887421 111233333 234 899999998632
Q ss_pred CCCCCCCCCcccccCCcEEEEE-ecCCCcCHHHHHHHHcCCceeccHH
Q 010050 442 PNTDRVPVSEETLRDYQLVFDA-VYTPRKTRLLKDAEAAGAIIVSGVE 488 (519)
Q Consensus 442 ~~~~~~~l~~~~l~~~~~v~Di-~Y~P~~T~ll~~A~~~G~~~~~Gl~ 488 (519)
|. +..++++++..|.-+ .|.|....+-.+.-++.-.+++-.+
T Consensus 206 P~-----~~~~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvvD~~~ 248 (326)
T PRK06046 206 PV-----VKAEWIKEGTHINAIGADAPGKQELDPEILLRAKVVVDDME 248 (326)
T ss_pred cE-----ecHHHcCCCCEEEecCCCCCccccCCHHHHhCCcEEECCHH
Confidence 21 566788888776555 3556533332232222223455443
No 74
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.86 E-value=0.0006 Score=68.82 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=122.5
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCC----
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD---- 329 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~---- 329 (519)
+..+++|++..-..++- +++.+.++.+ .+++..|+-|-.|+-.. +| +. +...+++--. + -|
T Consensus 62 k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~----id---~~-~i~~~I~p~K-D-VDGl~~ 131 (299)
T PLN02516 62 KACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKH----IN---EE-KILNEISLEK-D-VDGFHP 131 (299)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCC----cC---HH-HHHhccCccc-c-cCccCH
Confidence 56889999876665543 3566777766 57889999999996532 22 11 1112222111 0 01
Q ss_pred ---CeEE-E------eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEe
Q 010050 330 ---GKLI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD 398 (519)
Q Consensus 330 ---g~l~-G------~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~n 398 (519)
|++. | .----.|++.-|+. .+.+++||+++|+|-+ -.||.++.-|.+.|+.|++++
T Consensus 132 ~n~g~l~~~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvch 198 (299)
T PLN02516 132 LNIGKLAMKGREPLFLPCTPKGCLELLSR-------------SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVH 198 (299)
T ss_pred hhHhhHhcCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 2222 1 01223556555543 1468999999999998 589999999999999999997
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcC-------H
Q 010050 399 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKT-------R 471 (519)
Q Consensus 399 Rt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T-------~ 471 (519)
..-.. +.+ ...++|+||.|++. |. .+..++++++.+|+|+-.+..+. .
T Consensus 199 s~T~n-----------------l~~-~~~~ADIvv~AvGk---~~----~i~~~~vk~gavVIDvGin~~~~~~~~~g~k 253 (299)
T PLN02516 199 SRTPD-----------------PES-IVREADIVIAAAGQ---AM----MIKGDWIKPGAAVIDVGTNAVSDPSKKSGYR 253 (299)
T ss_pred CCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEeeccccCcccccCCCc
Confidence 53211 112 24568999988753 32 47889999999999997664211 1
Q ss_pred HH-----HHHHHc-CC--ceeccH-----HHHHHHHHHHHHHhcC
Q 010050 472 LL-----KDAEAA-GA--IIVSGV-----EMFLRQAIGQFNLFTG 503 (519)
Q Consensus 472 ll-----~~A~~~-G~--~~~~Gl-----~mli~Qa~~qf~lw~g 503 (519)
+. +.+++. ++ ++-.|. -||+.+.+.+.+.|..
T Consensus 254 l~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~ 298 (299)
T PLN02516 254 LVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298 (299)
T ss_pred eEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 10 222222 21 233343 4888888888877753
No 75
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.85 E-value=0.00022 Score=71.27 Aligned_cols=167 Identities=18% Similarity=0.262 Sum_probs=106.4
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+..+++|++..-..++- +++.+.++.+ .+++..|+-|-.|....+ -..++.++|. +.+-..+-.- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK-KDVDGFHPYN----VG 127 (281)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch-hcccccChhh----hh
Confidence 367899999876555543 2566666666 578899999999975322 1112222221 1111111100 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 331 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
++ .|. ----.|++.-|+.. +.+++||+++|+|-| -.|+.++..|.+.|+.|+++...-.
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~-- 192 (281)
T PRK14183 128 RLVTGLDGFVPCTPLGVMELLEEY-------------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTK-- 192 (281)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCc--
Confidence 11 110 11255666665432 468999999999998 7999999999999999998874321
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
.|. + ...++|+||.|++- |. .+..++++++.+|+|+-.++
T Consensus 193 -~l~--------------~-~~~~ADIvV~AvGk---p~----~i~~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 193 -DLK--------------A-HTKKADIVIVGVGK---PN----LITEDMVKEGAIVIDIGINR 232 (281)
T ss_pred -CHH--------------H-HHhhCCEEEEecCc---cc----ccCHHHcCCCcEEEEeeccc
Confidence 121 1 23568999988853 32 47889999999999998665
No 76
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.85 E-value=0.00022 Score=71.43 Aligned_cols=197 Identities=17% Similarity=0.261 Sum_probs=121.1
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+.++++|++.....++- +++.+.++.+ .+++..|+-|-+|+...+ ...++.++|. +.+-..+..- -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 129 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE-KDVDGVTTLS----FG 129 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccccCChhh----HH
Confidence 367899999988776654 2566667666 568899999999975321 1111111111 0000011000 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeC-CHHH
Q 010050 331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI-DFER 403 (519)
Q Consensus 331 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nR-t~~k 403 (519)
++ .|. -.--.|++.-|+.. +.+++||+++|+|-+ -.|+.++.-|.+.|+.|++++. |.+
T Consensus 130 ~l~~g~~~~~PcTp~avi~ll~~y-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~- 195 (284)
T PRK14177 130 KLSMGVETYLPCTPYGMVLLLKEY-------------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQN- 195 (284)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC-
Confidence 11 111 12345666665532 368999999999997 5999999999999999999884 321
Q ss_pred HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC---cCHHHHHHHHcC
Q 010050 404 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR---KTRLLKDAEAAG 480 (519)
Q Consensus 404 a~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~---~T~ll~~A~~~G 480 (519)
| .+ ...++|+||.|++. |+ .+..++++++.+|+|+-.+.. +-.|-......+
T Consensus 196 ---l--------------~~-~~~~ADIvIsAvGk---~~----~i~~~~ik~gavVIDvGin~~~~GDVd~~~v~~~a~ 250 (284)
T PRK14177 196 ---L--------------PS-IVRQADIIVGAVGK---PE----FIKADWISEGAVLLDAGYNPGNVGDIEISKAKDKSS 250 (284)
T ss_pred ---H--------------HH-HHhhCCEEEEeCCC---cC----ccCHHHcCCCCEEEEecCcccccCCcCHHHHhhhcc
Confidence 1 11 23568999987764 32 377899999999999987643 233222222223
Q ss_pred C--ceeccHH-----HHHHHHHHHH
Q 010050 481 A--IIVSGVE-----MFLRQAIGQF 498 (519)
Q Consensus 481 ~--~~~~Gl~-----mli~Qa~~qf 498 (519)
+ ++=.|.+ ||+.+.+..+
T Consensus 251 ~iTPVPGGVGp~T~a~L~~N~~~a~ 275 (284)
T PRK14177 251 FYTPVPGGVGPMTIAVLLLQTLYSF 275 (284)
T ss_pred EecCCCCCChHHHHHHHHHHHHHHH
Confidence 2 2335554 7888777665
No 77
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.83 E-value=4.5e-05 Score=77.71 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=68.9
Q ss_pred CceEEEEccchhhHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~-G~-~v~i~nRt~~ka~~La~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~ 441 (519)
.+++.|+|+|.-|+.-+.++... +. +|.|+||++++++++++++... ....++.++ ...++|||+.||+...
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~e-av~~aDIV~taT~s~~- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEA-ALRDADTITSITNSDT- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCCC-
Confidence 47899999999999999888864 56 8999999999999999887532 222233444 4678999999998642
Q ss_pred CCCCCCCCCcccccCCcEEEEE-ecCCC
Q 010050 442 PNTDRVPVSEETLRDYQLVFDA-VYTPR 468 (519)
Q Consensus 442 ~~~~~~~l~~~~l~~~~~v~Di-~Y~P~ 468 (519)
|. +..+|++++..|.-+ .|.|.
T Consensus 195 P~-----~~~~~l~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 195 PI-----FNRKYLGDEYHVNLAGSNYPN 217 (301)
T ss_pred cE-----ecHHHcCCCceEEecCCCCCC
Confidence 32 566788887554433 35554
No 78
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=0.00021 Score=71.69 Aligned_cols=161 Identities=19% Similarity=0.288 Sum_probs=105.8
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCCC---
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--- 330 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--- 330 (519)
+..+++|++.....++- +++.+.++.+ .+.+..|+-|-+|+-. ++|+ . +.+.+++--.-- ||
T Consensus 52 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~~ 121 (287)
T PRK14173 52 RQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPP----HIDF---Q-RVLEAIDPLKDV--DGFHP 121 (287)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--cccCh
Confidence 57899999988777763 3567777766 4677999999999753 1211 1 122222221100 11
Q ss_pred ----eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCC
Q 010050 331 ----KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDID 400 (519)
Q Consensus 331 ----~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt 400 (519)
+++ | .-.--.|++.-|+. .+.+++||+++|+|.+ -.|+.++..|...|+.|+++.+.
T Consensus 122 ~N~g~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~ 188 (287)
T PRK14173 122 LNVGRLWMGGEALEPCTPAGVVRLLKH-------------YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK 188 (287)
T ss_pred hhhHHHhcCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC
Confidence 111 1 11234455555443 2468999999999997 59999999999999999998754
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 401 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 401 ~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
-.. +.+ ...++||||.|++. |+ .+..++++++.+|+|+-.+.
T Consensus 189 T~~-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 189 TQD-----------------LPA-VTRRADVLVVAVGR---PH----LITPEMVRPGAVVVDVGINR 230 (287)
T ss_pred CCC-----------------HHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccCcc
Confidence 221 111 23568999988864 22 36789999999999997664
No 79
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=0.00036 Score=70.21 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=112.0
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 314 (519)
.-++| +|-+++--- .-.+..+++|++.....++- +++.+.++.+ .+++..|+-|-.|+.. ++|+ .
T Consensus 37 iI~vg~d~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~---~- 107 (294)
T PRK14187 37 VILVGDDPASQLYVR-NKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDK---N- 107 (294)
T ss_pred EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-
Confidence 34555 444433222 22367899999987777763 2466666666 5778999999999752 2221 1
Q ss_pred hhccceeEEEEecCC-------CeE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hh
Q 010050 315 QAIAAVNTIIRRPSD-------GKL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GA 379 (519)
Q Consensus 315 ~~iGavNTi~~~~~~-------g~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-ga 379 (519)
+.+.+++--. + -| |++ .|. ----.|++.-|+.. +.+++||+++|+|.+ -.
T Consensus 108 ~i~~~I~p~K-D-VDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iV 172 (294)
T PRK14187 108 LIINTIDPEK-D-VDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-------------TRNLSGSDAVVIGRSNIV 172 (294)
T ss_pred HHHhccCccc-C-cccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccc
Confidence 1111111111 0 01 121 121 11345666655432 368999999999998 59
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcE
Q 010050 380 GRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQL 459 (519)
Q Consensus 380 arai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~ 459 (519)
|+.++..|.+.|+.|+++...-.. +.+ ...++||||.|++. |+ .+..++++++.+
T Consensus 173 GkPla~lL~~~~aTVt~chs~T~~-----------------l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gai 227 (294)
T PRK14187 173 GKPMACLLLGENCTVTTVHSATRD-----------------LAD-YCSKADILVAAVGI---PN----FVKYSWIKKGAI 227 (294)
T ss_pred hHHHHHHHhhCCCEEEEeCCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCE
Confidence 999999999999999998863211 112 24568999988864 32 378899999999
Q ss_pred EEEEecCC
Q 010050 460 VFDAVYTP 467 (519)
Q Consensus 460 v~Di~Y~P 467 (519)
|+|+-.++
T Consensus 228 VIDVGin~ 235 (294)
T PRK14187 228 VIDVGINS 235 (294)
T ss_pred EEEecccc
Confidence 99996554
No 80
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.0005 Score=68.95 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=106.0
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHHhhccceeEEEEecCC----
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD---- 329 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~---- 329 (519)
+..+++|++.....++- +++.+.++.+ .+++..|+-|-+|+-. ++| +. +.+.+++--.-- |
T Consensus 55 k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id---~~-~i~~~I~p~KDV--DGl~~ 124 (284)
T PRK14193 55 RDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLD---EN-AVLERIDPAKDA--DGLHP 124 (284)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCC---HH-HHHhcCCcccCc--cCCCh
Confidence 57889999987776663 2566666666 5778999999999752 121 11 122222221100 1
Q ss_pred ---CeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHh--CCCeEEEEe
Q 010050 330 ---GKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKS--RGARVVIFD 398 (519)
Q Consensus 330 ---g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~--~G~~v~i~n 398 (519)
|++. | .-.--.|++.-|+.. +.+++||+++|+|.+ -.|+.++..|.+ .++.|+++.
T Consensus 125 ~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvch 191 (284)
T PRK14193 125 TNLGRLVLNEPAPLPCTPRGIVHLLRRY-------------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCH 191 (284)
T ss_pred hhhhHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeC
Confidence 1111 1 122345666665432 468999999999997 589999999988 688999988
Q ss_pred CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 399 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 399 Rt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
.... ++.+ ...++|+||.|++. |+ .+..++++++.+|+|+-.++
T Consensus 192 s~T~-----------------~l~~-~~k~ADIvV~AvGk---p~----~i~~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 192 TGTR-----------------DLAA-HTRRADIIVAAAGV---AH----LVTADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CCCC-----------------CHHH-HHHhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccccc
Confidence 6421 1112 24568999988864 32 47889999999999998776
No 81
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.0002 Score=71.61 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=113.8
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhccCH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 312 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 312 (519)
.-++| +|-+++---.. .+..+++|++.....++- +++.+.++.+ .+++..|+-|-+|....+- ..+..++|
T Consensus 35 ii~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p 113 (282)
T PRK14166 35 VILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS 113 (282)
T ss_pred EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence 34555 44444433233 256789999987777664 2566666666 5778999999999763221 11111111
Q ss_pred HHhhccceeEEEEecCCCeE-EEe-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHH
Q 010050 313 LAQAIAAVNTIIRRPSDGKL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAF 385 (519)
Q Consensus 313 ~A~~iGavNTi~~~~~~g~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~ 385 (519)
. +.+-..+.+- -|++ .|. ----.|++.-|+.. +.++.||+++|+|-+ -.|+.++.
T Consensus 114 ~-KDVDGl~~~N----~g~l~~g~~~~~~PcTp~avi~lL~~y-------------~i~l~Gk~vvVvGrS~iVGkPla~ 175 (282)
T PRK14166 114 S-KDVDGFHPIN----VGYLNLGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMAT 175 (282)
T ss_pred c-cCcccCChhh----hHHHhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHH
Confidence 1 1111111100 0111 121 11245666665432 367999999999998 58999999
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEec
Q 010050 386 GAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY 465 (519)
Q Consensus 386 ~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y 465 (519)
.|.+.|+.|+++.+.-.. +.+ ...++||||.|++. |+ .+..++++++.+|+|+-.
T Consensus 176 lL~~~~atVt~chs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~GavVIDvGi 230 (282)
T PRK14166 176 MLLNAGATVSVCHIKTKD-----------------LSL-YTRQADLIIVAAGC---VN----LLRSDMVKEGVIVVDVGI 230 (282)
T ss_pred HHHHCCCEEEEeCCCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEecc
Confidence 999999999998864221 111 23568999988864 32 377899999999999976
Q ss_pred CC
Q 010050 466 TP 467 (519)
Q Consensus 466 ~P 467 (519)
++
T Consensus 231 n~ 232 (282)
T PRK14166 231 NR 232 (282)
T ss_pred cc
Confidence 65
No 82
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00032 Score=70.73 Aligned_cols=199 Identities=16% Similarity=0.217 Sum_probs=121.7
Q ss_pred HHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCCe
Q 010050 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (519)
Q Consensus 259 ~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g~ 331 (519)
+..+++|++..-..++. +++.+.++.+ .+++..|+-|=.|+-..+ ...++.++|. +.+-..+..- -|+
T Consensus 55 k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g~ 129 (297)
T PRK14186 55 KACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLN----LGR 129 (297)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HHH
Confidence 67889999887665543 2577777777 577899999999975322 1122222221 1111111100 011
Q ss_pred E-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHH
Q 010050 332 L-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAK 405 (519)
Q Consensus 332 l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~ 405 (519)
+ .| .-.--.|++.-|+.. +.+++||+|+|+|-+ -.|+.++..|.+.|+.|+++...-..
T Consensus 130 l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~-- 194 (297)
T PRK14186 130 LVKGEPGLRSCTPAGVMRLLRSQ-------------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQD-- 194 (297)
T ss_pred HhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC--
Confidence 1 01 112356666665532 468999999999997 59999999999999999998643211
Q ss_pred HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCc-----------CHHHH
Q 010050 406 SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-----------TRLLK 474 (519)
Q Consensus 406 ~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~-----------T~ll~ 474 (519)
+.+ ...++||||.|++. |+ .+..++++++.+|+|+-.+... -.|-.
T Consensus 195 ---------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~ 251 (297)
T PRK14186 195 ---------------LAS-ITREADILVAAAGR---PN----LIGAEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEE 251 (297)
T ss_pred ---------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEeccccccccccCCceeCCccHHH
Confidence 111 23568999988864 33 3788999999999999776521 22212
Q ss_pred HHHHcCC--ceeccH-----HHHHHHHHHHHHH
Q 010050 475 DAEAAGA--IIVSGV-----EMFLRQAIGQFNL 500 (519)
Q Consensus 475 ~A~~~G~--~~~~Gl-----~mli~Qa~~qf~l 500 (519)
..+..++ ++=.|. -||+.+.+.+++.
T Consensus 252 v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~ 284 (297)
T PRK14186 252 VEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQK 284 (297)
T ss_pred HHhhceEecCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2222232 233444 4888888777654
No 83
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.76 E-value=0.0001 Score=76.04 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=68.3
Q ss_pred CceEEEEccchhhHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHhcC---CccccccccccCCCCccEEEECCCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMG---AARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~-G~-~v~i~nRt~~ka~~La~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
.+++.|||+|.+|++-+.+|... .. +|+|++|+.++++++++++.. .....++..+ ...++|+||.|||... |
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~e-av~~aDiVitaT~s~~-P 205 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPRE-AVEGCDILVTTTPSRK-P 205 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHH-HhccCCEEEEecCCCC-c
Confidence 47899999999999988887653 45 899999999999999887642 1112333334 4578999999998642 3
Q ss_pred CCCCCCCCcccccCCcEEEEE-ecCCC
Q 010050 443 NTDRVPVSEETLRDYQLVFDA-VYTPR 468 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di-~Y~P~ 468 (519)
. +..++++++..+.=+ .|.|.
T Consensus 206 ~-----~~~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 206 V-----VKADWVSEGTHINAIGADAPG 227 (325)
T ss_pred E-----ecHHHcCCCCEEEecCCCCcc
Confidence 2 456788888776666 34554
No 84
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=7.8e-05 Score=76.43 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=69.2
Q ss_pred CceEEEEccchhhHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~-G~-~v~i~nRt~~ka~~La~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
.+++.|+|+|..|+.-+.++... .. +|+|+||++++++++++.+... ....++.++ ...++|||+.||+... |
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIV~taT~s~~-P 205 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAE-VAHAANLIVTTTPSRE-P 205 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHH-HhcCCCEEEEecCCCC-c
Confidence 47899999999999999998764 56 8999999999999999876422 212233333 4678999999998542 3
Q ss_pred CCCCCCCCcccccCCcEEEEE-ecCCC
Q 010050 443 NTDRVPVSEETLRDYQLVFDA-VYTPR 468 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di-~Y~P~ 468 (519)
. +..+|++++..+.=+ .|.|.
T Consensus 206 ~-----~~~~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 206 L-----LQAEDIQPGTHITAVGADSPG 227 (315)
T ss_pred e-----eCHHHcCCCcEEEecCCCCcc
Confidence 2 566788888776555 34564
No 85
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.00051 Score=69.09 Aligned_cols=167 Identities=14% Similarity=0.218 Sum_probs=104.9
Q ss_pred HHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+.++++|++.....++- +++.+.++.+ .++...|+-|-.|....+ ...++.++|. +.+-..+-+ +-|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~----N~g 127 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR-KDVDGFHPI----NVG 127 (293)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcCCCCHh----hHH
Confidence 368899999987666654 2566666666 577899999999975322 1111111111 000000000 001
Q ss_pred eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCC
Q 010050 331 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFDID 400 (519)
Q Consensus 331 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~----G~~v~i~nRt 400 (519)
++. |. ----.|++.-|+.. +.+++||+|+|+|-+ -.|+.++.-|.+. ++.|++++..
T Consensus 128 ~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~ 194 (293)
T PRK14185 128 RMSIGLPCFVSATPNGILELLKRY-------------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR 194 (293)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC
Confidence 221 11 11345666665532 367999999999998 5999999999988 5789998643
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCC
Q 010050 401 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 401 ~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
-. ++.+ ...++||||.|++. |+ .+..++++++.+|+|+-.++
T Consensus 195 T~-----------------nl~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 195 SK-----------------NLKK-ECLEADIIIAALGQ---PE----FVKADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecCcc
Confidence 21 1111 23568999988864 32 37789999999999998765
No 86
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.75 E-value=6.8e-05 Score=74.49 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=76.1
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
..+++-.||-|-||.+++..|.+.|++|+|+||+.++.+.+++.-....-+..++ .+.+|+||...|-. .+...
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeV----ae~sDvvitmv~~~--~~v~~ 107 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEV----AEDSDVVITMVPNP--KDVKD 107 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHH----HhhcCEEEEEcCCh--HhhHH
Confidence 4678999999999999999999999999999999999999987632222222333 35689999666532 11111
Q ss_pred CCCCc----ccccCCcEE-EEEecC-CCc-CHHHHHHHHcCCceec
Q 010050 447 VPVSE----ETLRDYQLV-FDAVYT-PRK-TRLLKDAEAAGAIIVS 485 (519)
Q Consensus 447 ~~l~~----~~l~~~~~v-~Di~Y~-P~~-T~ll~~A~~~G~~~~~ 485 (519)
..+.. +.+.++... +|+... |.- ..+-++++.+|++.++
T Consensus 108 v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD 153 (327)
T KOG0409|consen 108 VLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD 153 (327)
T ss_pred HhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe
Confidence 11221 123455544 799876 442 4666677778887543
No 87
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.73 E-value=6.5e-05 Score=77.04 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=60.7
Q ss_pred CceEEEEccchhhHHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHhcCCc---cccccccccCCCCccEEEECCCCCCC-
Q 010050 368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAA---RPFEDILNFQPEKGAILANATPLGMH- 441 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~-~G~-~v~i~nRt~~ka~~La~~~~~~~---~~~~~l~~~~~~~~divInat~~g~~- 441 (519)
.+++.|+|+|.-|+.-+.++.. ++. +|.|+||++++++++++++.... ...++.++ ...++||||.||+....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~-av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEE-AVRGADIIVTATPSTTPA 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHH-HHTTSSEEEE----SSEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhh-hcccCCEEEEccCCCCCC
Confidence 3689999999999999999875 567 99999999999999999986521 22233444 46789999999997542
Q ss_pred CCCCCCCCCcccccCCcEEEEEe-cCCCc
Q 010050 442 PNTDRVPVSEETLRDYQLVFDAV-YTPRK 469 (519)
Q Consensus 442 ~~~~~~~l~~~~l~~~~~v~Di~-Y~P~~ 469 (519)
| .+..+|++++..+.-+- |.|..
T Consensus 207 P-----~~~~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 207 P-----VFDAEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp E-----SB-GGGS-TT-EEEE-S-SSTTB
T ss_pred c-----cccHHHcCCCcEEEEecCCCCch
Confidence 2 26678999988776664 44653
No 88
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.73 E-value=4.1e-05 Score=71.92 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
...+.|+++.|+|.|.+|++++..|+..|++|..++|+...... ....+. .+.++++ ...++|+|+++.|..-
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~~~~---~~~~l~e-ll~~aDiv~~~~plt~-- 103 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG-ADEFGV---EYVSLDE-LLAQADIVSLHLPLTP-- 103 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH-HHHTTE---EESSHHH-HHHH-SEEEE-SSSST--
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh-cccccc---eeeehhh-hcchhhhhhhhhcccc--
Confidence 46789999999999999999999999999999999999886542 222222 2333333 3456899999999642
Q ss_pred CCCCCCCCccc---ccCCcEEEEEecCCC-cCHHHHHHHHcCC
Q 010050 443 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGA 481 (519)
Q Consensus 443 ~~~~~~l~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~ 481 (519)
. ..-.++.+. ++++.+++.+.-.+. +..=+.+|-+.|.
T Consensus 104 ~-T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 104 E-TRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp T-TTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred c-cceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 2 122355543 467788887765433 2333344445454
No 89
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.73 E-value=0.001 Score=66.11 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=135.7
Q ss_pred EeeccCCCcccCCHHHHHHHHHHcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchH-----HHHhhhhcc
Q 010050 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCDEV 310 (519)
Q Consensus 241 ~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d~~ 310 (519)
.-++|+--+....=.+-.+..++.|+...+..++. +++.+.++.+ .++++.|.-|-.|.=. .++..++-
T Consensus 35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p- 113 (283)
T COG0190 35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDP- 113 (283)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCc-
Confidence 34556443333333455678999999988887763 3566666666 6889999999999532 22222110
Q ss_pred CHHHhhccceeEEEEecCCCeEE-E---e-eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hhHHHH
Q 010050 311 HPLAQAIAAVNTIIRRPSDGKLI-G---Y-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALA 384 (519)
Q Consensus 311 ~~~A~~iGavNTi~~~~~~g~l~-G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGg-aarai~ 384 (519)
+..+.-..-.| -|++. | + -.--.|++..|+.. +.++.||+++|+|.+. .||.++
T Consensus 114 ~KDVDG~hp~N-------~g~L~~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla 173 (283)
T COG0190 114 EKDVDGFHPYN-------LGKLAQGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLA 173 (283)
T ss_pred CCCccccChhH-------hcchhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHH
Confidence 00001111111 13333 2 0 12357888877652 3689999999999984 899999
Q ss_pred HHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEe
Q 010050 385 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV 464 (519)
Q Consensus 385 ~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~ 464 (519)
..|...++.|+|++..-.. + .+ ..+++|++|.|+.. |+ .+..++++++.+|+|+=
T Consensus 174 ~lL~~~naTVtvcHs~T~~---l--------------~~-~~k~ADIvv~AvG~---p~----~i~~d~vk~gavVIDVG 228 (283)
T COG0190 174 LLLLNANATVTVCHSRTKD---L--------------AS-ITKNADIVVVAVGK---PH----FIKADMVKPGAVVIDVG 228 (283)
T ss_pred HHHHhCCCEEEEEcCCCCC---H--------------HH-HhhhCCEEEEecCC---cc----ccccccccCCCEEEecC
Confidence 9999999999999864211 1 11 24568999988754 22 36678999999999985
Q ss_pred cCCC-------cCHHHHHHHHcCC-ceec-cHH-----HHHHHHHHHHHHhcC
Q 010050 465 YTPR-------KTRLLKDAEAAGA-IIVS-GVE-----MFLRQAIGQFNLFTG 503 (519)
Q Consensus 465 Y~P~-------~T~ll~~A~~~G~-~~~~-Gl~-----mli~Qa~~qf~lw~g 503 (519)
.+.. +..|-...++.++ .-++ |.+ ||+..-+.+++.-.+
T Consensus 229 inrv~~~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~ 281 (283)
T COG0190 229 INRVNDGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281 (283)
T ss_pred CccccCCceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 5432 2344333333433 3455 544 888887777765443
No 90
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.73 E-value=4.4e-05 Score=77.70 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=73.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 449 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l 449 (519)
++.|||.|-||.+++..|.+.|.+|+++||++++++++.+.-.....+.+++.+ ...++|+|+-++|.+.....- ..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~~~~~dvIi~~vp~~~~~~v~-~~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQ-RLSAPRVVWVMVPHGIVDAVL-EEL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHh-hcCCCCEEEEEcCchHHHHHH-HHH
Confidence 589999999999999999999999999999999999988642212223333322 235689999999875211100 001
Q ss_pred CcccccCCcEEEEEecC-CCcCH-HHHHHHHcCCcee
Q 010050 450 SEETLRDYQLVFDAVYT-PRKTR-LLKDAEAAGAIIV 484 (519)
Q Consensus 450 ~~~~l~~~~~v~Di~Y~-P~~T~-ll~~A~~~G~~~~ 484 (519)
...++++.+++|..-. |..|. +.+..+++|...+
T Consensus 80 -~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~v 115 (298)
T TIGR00872 80 -APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL 115 (298)
T ss_pred -HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEE
Confidence 1235678899998655 44443 2334556666533
No 91
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.71 E-value=4.1e-05 Score=76.93 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=80.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH-hcCCccccccc-cccCCCCccEEEECCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD-VMGAARPFEDI-LNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~-~~~~~~~~~~l-~~~~~~~~divInat~~g~~~~~~~ 446 (519)
++++|+|.|.+|++++..|++.|..+.|++|+..+++..+.. ++.......+. .. ...++|+||-|+|+......-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~-~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAE-AAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhh-hcccCCEEEEeccHHHHHHHHH
Confidence 689999999999999999999999999999988776555443 55422111111 11 3456899999999865322100
Q ss_pred CCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCC---ceeccHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMF 490 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~---~~~~Gl~ml 490 (519)
. +.+ .++++.++.|+... .++.++.+++.+- ++++|-.|+
T Consensus 83 ~-l~~-~l~~g~iv~Dv~S~--K~~v~~a~~~~~~~~~~~vg~HPM~ 125 (279)
T COG0287 83 E-LAP-HLKKGAIVTDVGSV--KSSVVEAMEKYLPGDVRFVGGHPMF 125 (279)
T ss_pred H-hcc-cCCCCCEEEecccc--cHHHHHHHHHhccCCCeeEecCCCC
Confidence 0 111 46789999999865 6777788887652 477776665
No 92
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.0004 Score=69.70 Aligned_cols=183 Identities=18% Similarity=0.246 Sum_probs=113.3
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhccCH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP 312 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~ 312 (519)
.-++| +|-+++-- ..-.+.++++|++.....++-+ ++.+.++.+ .+++..|+-|-.|.-..+- ..++.++|
T Consensus 31 iI~vg~d~as~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p 109 (287)
T PRK14181 31 VVLIGNDPASEVYV-GMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISP 109 (287)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCc
Confidence 34455 34333322 2233678999999877777542 577777777 5778999999999753221 11222222
Q ss_pred HHhhccceeEEEEecCCCeEE-Ee-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHH
Q 010050 313 LAQAIAAVNTIIRRPSDGKLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAF 385 (519)
Q Consensus 313 ~A~~iGavNTi~~~~~~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~ 385 (519)
. +.+-..+..- -|++. |. ----.|++.-|+.. +.+++||+++|+|-+ -.||.++.
T Consensus 110 ~-KDVDGl~p~n----~g~l~~g~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~ 171 (287)
T PRK14181 110 D-KDVDGLHPVN----MGKLLLGETDGFIPCTPAGIIELLKYY-------------EIPLHGRHVAIVGRSNIVGKPLAA 171 (287)
T ss_pred c-cCcccCChhh----HHHHhcCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHH
Confidence 1 1111111100 01221 11 12345666665532 468999999999998 58999999
Q ss_pred HHHhC----CCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEE
Q 010050 386 GAKSR----GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF 461 (519)
Q Consensus 386 ~L~~~----G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~ 461 (519)
.|.+. ++.|++++..-.. +.+ ...++|+||.|++. |. .+..++++++.+|+
T Consensus 172 lL~~~~~~~~AtVtvchs~T~~-----------------l~~-~~~~ADIvV~AvG~---p~----~i~~~~ik~GavVI 226 (287)
T PRK14181 172 LLMQKHPDTNATVTLLHSQSEN-----------------LTE-ILKTADIIIAAIGV---PL----FIKEEMIAEKAVIV 226 (287)
T ss_pred HHHhCcCCCCCEEEEeCCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEE
Confidence 99988 6799998753111 111 23568999988864 32 47889999999999
Q ss_pred EEecCC
Q 010050 462 DAVYTP 467 (519)
Q Consensus 462 Di~Y~P 467 (519)
|+-.++
T Consensus 227 DvGin~ 232 (287)
T PRK14181 227 DVGTSR 232 (287)
T ss_pred Eecccc
Confidence 997765
No 93
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.67 E-value=0.00032 Score=64.57 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=55.1
Q ss_pred CCCCCCceEEEEccch-hhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGg-aarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~ 441 (519)
+.+++||+++|+|.+. .|+.++..|.+.|+.|+++...-+..++ ...++|+||.|++.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~------------------~~~~ADIVVsa~G~--- 89 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE------------------ITRRADIVVSAVGK--- 89 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH------------------HHTTSSEEEE-SSS---
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc------------------eeeeccEEeeeecc---
Confidence 3679999999999985 9999999999999999998876322221 23568999988864
Q ss_pred CCCCCCCCCcccccCCcEEEEEecCCC
Q 010050 442 PNTDRVPVSEETLRDYQLVFDAVYTPR 468 (519)
Q Consensus 442 ~~~~~~~l~~~~l~~~~~v~Di~Y~P~ 468 (519)
|+ .++.++++++.+|+|+-.++.
T Consensus 90 ~~----~i~~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 90 PN----LIKADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp TT-----B-GGGS-TTEEEEE--CEEE
T ss_pred cc----ccccccccCCcEEEecCCccc
Confidence 32 378899999999999976644
No 94
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.65 E-value=0.00011 Score=75.22 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=55.8
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~--------~~~~~l~~~~~~~~divInat~~ 438 (519)
+++.|+|+|++|++++++|+..|+ +|++++|+.++++.++.++.... +...+.+ ...++|+||+|++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~--~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS--DCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH--HhCCCCEEEEccCC
Confidence 379999999999999999999995 89999999999999988773211 1111112 24679999999987
Q ss_pred CCCCC
Q 010050 439 GMHPN 443 (519)
Q Consensus 439 g~~~~ 443 (519)
.-.|.
T Consensus 79 ~~~~g 83 (306)
T cd05291 79 PQKPG 83 (306)
T ss_pred CCCCC
Confidence 55443
No 95
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.65 E-value=9.8e-05 Score=77.54 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=76.8
Q ss_pred CeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHh-C-CC-eEEEEeCCHHHHHH
Q 010050 330 GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-R-GA-RVVIFDIDFERAKS 406 (519)
Q Consensus 330 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~-~-G~-~v~i~nRt~~ka~~ 406 (519)
+.+++.-|=..+.+.+ + .|. .-.-+++.|+|+|..|+.-+.++.. . ++ +|+|+||+++++++
T Consensus 132 ~~lTa~RTaA~salaa-~-~LA-------------r~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~ 196 (379)
T PRK06199 132 NLLSAYRTGAVPGVGA-R-HLA-------------RKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS 196 (379)
T ss_pred cchhhhHHHHHHHHHH-H-Hhc-------------cCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 4566677766665543 2 232 1134789999999999999999887 3 37 99999999999999
Q ss_pred HHHHhcCC------ccccccccccCCCCccEEEECCCCCCC-CCCCCCC-CCcccccCCcEEE
Q 010050 407 LASDVMGA------ARPFEDILNFQPEKGAILANATPLGMH-PNTDRVP-VSEETLRDYQLVF 461 (519)
Q Consensus 407 La~~~~~~------~~~~~~l~~~~~~~~divInat~~g~~-~~~~~~~-l~~~~l~~~~~v~ 461 (519)
+++++... ....++.++ ...++|||+.||+.... |. ..| +..+|++++..+.
T Consensus 197 f~~~~~~~~~~~~~v~~~~s~~e-av~~ADIVvtaT~s~~~~~s--~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 197 FATWVAETYPQITNVEVVDSIEE-VVRGSDIVTYCNSGETGDPS--TYPYVKREWVKPGAFLL 256 (379)
T ss_pred HHHHHHHhcCCCceEEEeCCHHH-HHcCCCEEEEccCCCCCCCC--cCcEecHHHcCCCcEEe
Confidence 99888532 111233333 46789999999975331 11 123 4567787776543
No 96
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.64 E-value=8.6e-05 Score=75.69 Aligned_cols=110 Identities=20% Similarity=0.220 Sum_probs=73.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc-ccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-PFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~-~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
+|.|||.|-||.+++..|.+.|.+|+++||++++++++.+ .+.... +.+++.+ ...++|+||.+.|.+.. ... -
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~~~~e~~~-~~~~~dvvi~~v~~~~~--~~~-v 76 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-EGATGADSLEELVA-KLPAPRVVWLMVPAGEI--TDA-T 76 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCeecCCHHHHHh-hcCCCCEEEEEecCCcH--HHH-H
Confidence 5899999999999999999999999999999999988865 343221 2333222 12246899988876411 000 0
Q ss_pred CC--cccccCCcEEEEEecC-CCcC-HHHHHHHHcCCcee
Q 010050 449 VS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV 484 (519)
Q Consensus 449 l~--~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~~ 484 (519)
+. ...++++.+++|+.-. |..| .+.+.++++|+.++
T Consensus 77 ~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 77 IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 11 1235678899999654 5444 35567777887654
No 97
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00018 Score=74.62 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=68.6
Q ss_pred CceEEEEccchhhHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHhcCCcc---ccccccccCCCCccEEEECCCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGAAR---PFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~-G~-~v~i~nRt~~ka~~La~~~~~~~~---~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
-++++|+|+|.-|+.-+.++... .. +|+|+||++++++++++++....+ ..+++++ ...++|+|+.||+...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIIvtaT~S~~-- 205 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAE-AVEGADIITTVTADKT-- 205 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCCC--
Confidence 47899999999999998887754 56 899999999999999988853211 2233444 4678999999997421
Q ss_pred CCCCCC-CCcccccCCcEEEEE-ecCCCc
Q 010050 443 NTDRVP-VSEETLRDYQLVFDA-VYTPRK 469 (519)
Q Consensus 443 ~~~~~~-l~~~~l~~~~~v~Di-~Y~P~~ 469 (519)
..| +..+|++++..+.=+ .|.|..
T Consensus 206 ---~~Pvl~~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 206 ---NATILTDDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred ---CCceecHHHcCCCcEEEecCCCCCCc
Confidence 113 566788887754333 355653
No 98
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.62 E-value=8.3e-05 Score=75.33 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=74.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 449 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l 449 (519)
+|.|||.|-+|.+++..|.+.|.+|+++||++++++.+.+. +... ..+..+ ...++|+||.|.|... ......+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~aDivi~~vp~~~--~~~~v~~ 74 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAA-GAVT--AETARQ-VTEQADVIFTMVPDSP--QVEEVAF 74 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCcc--cCCHHH-HHhcCCEEEEecCCHH--HHHHHHc
Confidence 37899999999999999999999999999999998887653 3221 122222 2457899999988531 1110101
Q ss_pred Cc----ccccCCcEEEEEecCCCcC--HHHHHHHHcCCceecc
Q 010050 450 SE----ETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVSG 486 (519)
Q Consensus 450 ~~----~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~~~G 486 (519)
.. ..++++.+++|+...+..+ .+.+..+++|..+++.
T Consensus 75 ~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~ 117 (291)
T TIGR01505 75 GENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDA 117 (291)
T ss_pred CcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEec
Confidence 11 2245778999988764432 4666677778776653
No 99
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.0014 Score=66.17 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=112.3
Q ss_pred Eeecc-CCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccCHHH
Q 010050 241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314 (519)
Q Consensus 241 ~~liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 314 (519)
.-++| +|-+++--- .-.+.++++|++.....++-+ ++.+.++.+ .+++..|+-|-.|... ++| +..
T Consensus 36 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id---~~~ 107 (295)
T PRK14174 36 VIIVGEDPASQVYVR-NKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QID---EFA 107 (295)
T ss_pred EEEeCCChHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCC---HHH
Confidence 44556 343333221 223678999999887777752 577777777 5778999999999753 222 111
Q ss_pred hhccceeEEEEecCC-------CeEE-Ee--e----ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hh
Q 010050 315 QAIAAVNTIIRRPSD-------GKLI-GY--N----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GA 379 (519)
Q Consensus 315 ~~iGavNTi~~~~~~-------g~l~-G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-ga 379 (519)
...+++--. + -| |+++ |. + --..|++.-|+.. +.++.||+|+|+|.+ -.
T Consensus 108 -i~~~I~p~K-D-VDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-------------~i~l~Gk~vvViGrS~iV 171 (295)
T PRK14174 108 -VTLAIDPAK-D-VDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRY-------------NIETKGKHCVVVGRSNIV 171 (295)
T ss_pred -HHhcCCccc-c-ccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcc
Confidence 111222211 0 01 1221 21 1 2345665555432 367899999999998 58
Q ss_pred hHHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCccccc
Q 010050 380 GRALAFGAKS----RGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR 455 (519)
Q Consensus 380 arai~~~L~~----~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~ 455 (519)
||.++..|.+ .|+.|+++..+....+ + ...++|+||.|++. |. .+..++++
T Consensus 172 G~Pla~lL~~~~~~~~atVt~~hs~t~~l~-----------------~-~~~~ADIvI~Avg~---~~----li~~~~vk 226 (295)
T PRK14174 172 GKPMANLMLQKLKESNCTVTICHSATKDIP-----------------S-YTRQADILIAAIGK---AR----FITADMVK 226 (295)
T ss_pred hHHHHHHHHhccccCCCEEEEEeCCchhHH-----------------H-HHHhCCEEEEecCc---cC----ccCHHHcC
Confidence 9999999887 6789999887543211 1 23568999988843 22 37889999
Q ss_pred CCcEEEEEecCC
Q 010050 456 DYQLVFDAVYTP 467 (519)
Q Consensus 456 ~~~~v~Di~Y~P 467 (519)
++.+|+|+-.+.
T Consensus 227 ~GavVIDVgi~~ 238 (295)
T PRK14174 227 PGAVVIDVGINR 238 (295)
T ss_pred CCCEEEEeeccc
Confidence 999999997664
No 100
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.59 E-value=0.00023 Score=70.64 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=60.0
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc--------ccccccccc---------CCC
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RPFEDILNF---------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~--------~~~~~l~~~---------~~~ 427 (519)
..+++++|.|| +|.|++++..|++.|++|.++.|+.+|.++|++++.... +++.+.++. ...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 46789999999 799999999999999999999999999999999886322 122221110 113
Q ss_pred CccEEEECCCCCCCC
Q 010050 428 KGAILANATPLGMHP 442 (519)
Q Consensus 428 ~~divInat~~g~~~ 442 (519)
..|++||+-..|...
T Consensus 84 ~IdvLVNNAG~g~~g 98 (265)
T COG0300 84 PIDVLVNNAGFGTFG 98 (265)
T ss_pred cccEEEECCCcCCcc
Confidence 589999999888764
No 101
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.0007 Score=68.33 Aligned_cols=203 Identities=20% Similarity=0.257 Sum_probs=124.1
Q ss_pred HHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhccCHHHhhccceeEEEEecCCC
Q 010050 258 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (519)
Q Consensus 258 n~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g 330 (519)
.+.++++|++.....++-+ ++.+.++.+ .+++..|+-|-+|+...+ ...++.++|. +.+-..+..- -|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (297)
T PRK14167 53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG 127 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence 3678999999887777642 577777767 577899999999975322 1122222221 1111111100 01
Q ss_pred eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCC
Q 010050 331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFDID 400 (519)
Q Consensus 331 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~~----G~~v~i~nRt 400 (519)
++ .|. ----.|++.-|+.. +.+++||+|+|+|-+ -.|+.++.-|.+. ++.|+++...
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~ 194 (297)
T PRK14167 128 RLVAGDARFKPCTPHGIQKLLAAA-------------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR 194 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC
Confidence 11 111 12345666665532 367999999999998 5899999999887 6799998543
Q ss_pred HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCC-c-C--------
Q 010050 401 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-K-T-------- 470 (519)
Q Consensus 401 ~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~-~-T-------- 470 (519)
-. .| .+ ...++||||.|+.. |+ .+..++++++.+|+|+-.++. . |
T Consensus 195 T~---~l--------------~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gaiVIDvGin~~~~~~~~g~kl~G 249 (297)
T PRK14167 195 TD---DL--------------AA-KTRRADIVVAAAGV---PE----LIDGSMLSEGATVIDVGINRVDADTEKGYELVG 249 (297)
T ss_pred CC---CH--------------HH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEccccccCcccccCCceee
Confidence 21 11 11 24568999987754 32 478899999999999987652 1 1
Q ss_pred --HHHHHHHH-cCC--ceeccH-----HHHHHHHHHHHHHhcCC
Q 010050 471 --RLLKDAEA-AGA--IIVSGV-----EMFLRQAIGQFNLFTGK 504 (519)
Q Consensus 471 --~ll~~A~~-~G~--~~~~Gl-----~mli~Qa~~qf~lw~g~ 504 (519)
.| +.+++ .++ ++=.|. -||+++.+.+++.-.+.
T Consensus 250 DVd~-e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 292 (297)
T PRK14167 250 DVEF-ESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV 292 (297)
T ss_pred cCcH-HHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 11 22222 222 233444 48888888877654443
No 102
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.58 E-value=0.00014 Score=73.91 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=72.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 449 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l 449 (519)
++.|||.|-||.+++..|.+.|.+|+++||++++++++.+. +... ..+..+ ...++|+||-++|.... ......
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~-g~~~--~~s~~~-~~~~aDvVi~~vp~~~~--~~~vl~ 76 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK-GATP--AASPAQ-AAAGAEFVITMLPNGDL--VRSVLF 76 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCcc--cCCHHH-HHhcCCEEEEecCCHHH--HHHHHc
Confidence 68999999999999999999999999999999999888764 2221 112222 24568999999886421 000000
Q ss_pred -Cc---ccccCCcEEEEEecCCCc-C-HHHHHHHHcCCc
Q 010050 450 -SE---ETLRDYQLVFDAVYTPRK-T-RLLKDAEAAGAI 482 (519)
Q Consensus 450 -~~---~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~ 482 (519)
.. ..++++.+++|+...+.. + .+.+..+++|+.
T Consensus 77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 01 124678899999876443 3 445566667754
No 103
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.58 E-value=8.5e-05 Score=67.87 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
+++|++.|||.|.-|++-+..|++.|++|.|..|..++..+.|++-|.+..++++ ..+++|+|+..+|-
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~e----Av~~aDvV~~L~PD 70 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAE----AVKKADVVMLLLPD 70 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHH----HHHC-SEEEE-S-H
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHH----HHhhCCEEEEeCCh
Confidence 4689999999999999999999999999999999999888888888877666554 34568999999974
No 104
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.56 E-value=0.00015 Score=74.98 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=52.8
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
..+.||++.|+|.|.+|+.++..|...|++|.+++|+..... ...++... .++.+ ...++|+|+.++|..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~---~~l~e-ll~~aDiV~l~lP~t 215 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEY---RPLEE-LLRESDFVSLHVPLT 215 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEe---cCHHH-HHhhCCEEEEeCCCC
Confidence 457899999999999999999999999999999999865432 23333322 23333 346789999998863
No 105
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.56 E-value=8.7e-05 Score=75.82 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=74.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
+++.|||+|.+|.+++..|.+.|. +|++++|+.++.+.+. ..+.......+..+ ...++|+||.|+|.+.......
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~-~~~~aDvViiavp~~~~~~v~~ 84 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVTTSAAE-AVKGADLVILCVPVGASGAVAA 84 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceecCCHHH-HhcCCCEEEECCCHHHHHHHHH
Confidence 689999999999999999999985 8999999998776554 34421111122222 3467899999999754321000
Q ss_pred CCCCcccccCCcEEEEEecCCCcCHHHHHHHH---cCCceeccHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF 490 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~~~Gl~ml 490 (519)
.+ ...++++.+++|+... ....++...+ .+.+++++-.|.
T Consensus 85 -~l-~~~l~~~~iv~dvgs~--k~~~~~~~~~~~~~~~~~v~~hPm~ 127 (307)
T PRK07502 85 -EI-APHLKPGAIVTDVGSV--KASVIAAMAPHLPEGVHFIPGHPLA 127 (307)
T ss_pred -HH-HhhCCCCCEEEeCccc--hHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 01 1245677889998654 2344454443 355677765554
No 106
>PLN02928 oxidoreductase family protein
Probab=97.56 E-value=0.00017 Score=75.06 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHH--------HHhcCCccccccccccCCCCccEEEECC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA--------SDVMGAARPFEDILNFQPEKGAILANAT 436 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La--------~~~~~~~~~~~~l~~~~~~~~divInat 436 (519)
.+.||++.|+|.|.+|+.++..|+..|++|+.++|+..+..... ..+........++.+ ...++|+|++++
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~aDiVvl~l 234 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEADIVVLCC 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhCCEEEECC
Confidence 47899999999999999999999999999999999854322110 000001112334444 356789999999
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
|..
T Consensus 235 Plt 237 (347)
T PLN02928 235 TLT 237 (347)
T ss_pred CCC
Confidence 863
No 107
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.54 E-value=0.00044 Score=73.95 Aligned_cols=92 Identities=26% Similarity=0.259 Sum_probs=67.6
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
+..+.||+++|+|.|.+|+.++..|...|++|+++++++.++.... ..|....++++ ....+|+||.+|. ..
T Consensus 249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~~~~lee----ll~~ADIVI~atG--t~- 320 (476)
T PTZ00075 249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQVVTLED----VVETADIFVTATG--NK- 320 (476)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCceeccHHH----HHhcCCEEEECCC--cc-
Confidence 4678999999999999999999999999999999999988764332 23544444443 2457899999873 21
Q ss_pred CCCCCCCCccc---ccCCcEEEEEecC
Q 010050 443 NTDRVPVSEET---LRDYQLVFDAVYT 466 (519)
Q Consensus 443 ~~~~~~l~~~~---l~~~~~v~Di~Y~ 466 (519)
+ .+..+. ++++.+++++.-.
T Consensus 321 ~----iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 321 D----IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred c----ccCHHHHhccCCCcEEEEcCCC
Confidence 1 244333 4788888888655
No 108
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.54 E-value=0.00024 Score=75.35 Aligned_cols=91 Identities=25% Similarity=0.298 Sum_probs=64.0
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
..+.|++++|+|+|.+|+.++..|...|++|+++++++.++...+. .|....++++ ....+|++|.||... +
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-~G~~v~~l~e----al~~aDVVI~aTG~~---~ 279 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-DGFRVMTMEE----AAELGDIFVTATGNK---D 279 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-cCCEecCHHH----HHhCCCEEEECCCCH---H
Confidence 4578999999999999999999999999999999999988754433 3444333332 245789999988421 1
Q ss_pred CCCCCCCc---ccccCCcEEEEEecC
Q 010050 444 TDRVPVSE---ETLRDYQLVFDAVYT 466 (519)
Q Consensus 444 ~~~~~l~~---~~l~~~~~v~Di~Y~ 466 (519)
.+.. ..++++.+++.+-..
T Consensus 280 ----vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 280 ----VITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred ----HHHHHHHhcCCCCCEEEEcCCC
Confidence 1222 234566666666543
No 109
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.54 E-value=0.00047 Score=74.83 Aligned_cols=48 Identities=25% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
.+.+++++|+|.||+|++++..|.+.|++|++++|+..+..++.+.+|
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g 59 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTG 59 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcC
Confidence 467899999999999999999999999999999998776555444443
No 110
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.52 E-value=0.00022 Score=77.16 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=74.4
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh---cCC----ccccccccccCCCCccEEEECCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGA----ARPFEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~---~~~----~~~~~~l~~~~~~~~divInat~~g~~ 441 (519)
.++-+||-|-||++++..|.+.|++|+|+|||.++++++.+.. |.. ..+.+++.+ .++.+|+||-+.+.+..
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~-~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVL-SIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHh-cCCCCCEEEEECCCcHH
Confidence 4699999999999999999999999999999999999998742 221 112333322 24458999988776531
Q ss_pred CCCCCCCCC--cccccCCcEEEEEecC-CCcCH-HHHHHHHcCCc
Q 010050 442 PNTDRVPVS--EETLRDYQLVFDAVYT-PRKTR-LLKDAEAAGAI 482 (519)
Q Consensus 442 ~~~~~~~l~--~~~l~~~~~v~Di~Y~-P~~T~-ll~~A~~~G~~ 482 (519)
++.. +. ...+.++.+++|+... |..|. +.++++++|+.
T Consensus 86 --V~~V-i~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~ 127 (493)
T PLN02350 86 --VDQT-IKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL 127 (493)
T ss_pred --HHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 1111 11 1235688999999876 55553 33444556654
No 111
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.52 E-value=0.00039 Score=75.23 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcccccc-------------------------
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED------------------------- 420 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~------------------------- 420 (519)
..+.+++|+|+|.+|++++..++.+|++|++++++.++.+ .++.++...+.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 3467999999999999999999999999999999998754 55667765422221
Q ss_pred ccccCCCCccEEEECCCCCCCCCCCCCCCCcc---cccCCcEEEEEecCCC
Q 010050 421 ILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPR 468 (519)
Q Consensus 421 l~~~~~~~~divInat~~g~~~~~~~~~l~~~---~l~~~~~v~Di~Y~P~ 468 (519)
+.+ ..+++|++|+|.-+...|. +..+..+ .++++.+++|+...+.
T Consensus 241 ~~e-~~~~~DIVI~TalipG~~a--P~Lit~emv~~MKpGsvIVDlA~d~G 288 (511)
T TIGR00561 241 FAA-QAKEVDIIITTALIPGKPA--PKLITEEMVDSMKAGSVIVDLAAEQG 288 (511)
T ss_pred HHH-HhCCCCEEEECcccCCCCC--CeeehHHHHhhCCCCCEEEEeeeCCC
Confidence 111 2467999999984432221 1124443 4678999999987765
No 112
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00039 Score=71.35 Aligned_cols=138 Identities=19% Similarity=0.229 Sum_probs=93.0
Q ss_pred CCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhC-CC-eEEEEeCCHHHHHH
Q 010050 329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKS 406 (519)
Q Consensus 329 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~-G~-~v~i~nRt~~ka~~ 406 (519)
.+.+.+.-|=..+.+.+ +.|. .-.-+...|||+|..|+.-+.++... ++ +|.|++|+++.+++
T Consensus 106 ~~~lTa~RTaAasavAa--~~LA-------------~~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~ 170 (330)
T COG2423 106 ATRLTALRTAAASAVAA--KYLA-------------RKDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEA 170 (330)
T ss_pred CccHHHHHHHHHHHHHH--HHhc-------------cCCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHH
Confidence 34566666766666654 2232 11236899999999999999999865 67 99999999999999
Q ss_pred HHHHhcCC----ccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEe-cCCCcCHHHHHHHHcC-
Q 010050 407 LASDVMGA----ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV-YTPRKTRLLKDAEAAG- 480 (519)
Q Consensus 407 La~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~-Y~P~~T~ll~~A~~~G- 480 (519)
+++.+... ....++.++ ..+++|+|+.|||.-. | .+..+|++++..+-=+- +.|..+.+-.+..++-
T Consensus 171 ~a~~l~~~~~~~v~a~~s~~~-av~~aDiIvt~T~s~~-P-----il~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~ 243 (330)
T COG2423 171 FAARLRKRGGEAVGAADSAEE-AVEGADIVVTATPSTE-P-----VLKAEWLKPGTHINAIGADAPGKRELDPEVLARAD 243 (330)
T ss_pred HHHHHHhhcCccceeccCHHH-HhhcCCEEEEecCCCC-C-----eecHhhcCCCcEEEecCCCCcccccCCHHHHHhcC
Confidence 99776432 233444444 5678999999998632 2 25677888876554443 2466565555555544
Q ss_pred CceeccHH
Q 010050 481 AIIVSGVE 488 (519)
Q Consensus 481 ~~~~~Gl~ 488 (519)
+-+++=++
T Consensus 244 ~vvvD~~~ 251 (330)
T COG2423 244 RVVVDSLE 251 (330)
T ss_pred eEEEcCHH
Confidence 55666554
No 113
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.51 E-value=0.00015 Score=69.56 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC-------------------HHHHHHHHHHhcCC--cccc-----
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMGA--ARPF----- 418 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt-------------------~~ka~~La~~~~~~--~~~~----- 418 (519)
+.+++|+|+|+||.|..++..|...|+ ++++++++ ..|++.+++.+... .+.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 567899999999999999999999999 99999987 46788777776421 1111
Q ss_pred ----ccccccCCCCccEEEECCC
Q 010050 419 ----EDILNFQPEKGAILANATP 437 (519)
Q Consensus 419 ----~~l~~~~~~~~divInat~ 437 (519)
+++.+ ...++|+||+|+.
T Consensus 99 ~i~~~~~~~-~~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLEL-LINNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHH-HHhCCCEEEECCC
Confidence 11222 2467899999873
No 114
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.50 E-value=0.00018 Score=73.03 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=74.1
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
+++.|||.|.+|.+++..|.+.|.+|+++||++++.+++.+. +... ..+..+ ...++|+||.++|.... .....
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-g~~~--~~~~~e-~~~~~d~vi~~vp~~~~--~~~v~ 76 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAA-GAET--ASTAKA-VAEQCDVIITMLPNSPH--VKEVA 76 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEeCCCHHH--HHHHH
Confidence 469999999999999999999999999999999998877643 2211 122222 23568999999985431 00000
Q ss_pred CC----cccccCCcEEEEEecCCCcC--HHHHHHHHcCCceec
Q 010050 449 VS----EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVS 485 (519)
Q Consensus 449 l~----~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~~~ 485 (519)
+. ...++++.+++|+...+..+ .+.+..+++|..+++
T Consensus 77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 00 12346788999998875433 455556666755443
No 115
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.50 E-value=0.00014 Score=74.13 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=71.9
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
++.|||.|-||.+++..|.+.|.+|+++||++++++++++ .+... .+.+++.+ ...++|+||.++|.... ... -
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~s~~~~~~-~~~~advVi~~vp~~~~--~~~-v 76 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-LGITARHSLEELVS-KLEAPRTIWVMVPAGEV--TES-V 76 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-CCCeecCCHHHHHH-hCCCCCEEEEEecCchH--HHH-H
Confidence 5889999999999999999999999999999999988854 34321 12233211 12236999999886411 000 0
Q ss_pred CC--cccccCCcEEEEEecC-CCcC-HHHHHHHHcCCceec
Q 010050 449 VS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIVS 485 (519)
Q Consensus 449 l~--~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~~~ 485 (519)
+. ...++++.+++|+... |..+ .+.+.++++|+..++
T Consensus 77 ~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 77 IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 11 1235678899999654 5443 344455566765443
No 116
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.50 E-value=0.00023 Score=68.31 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~-ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
.+++|++|+|+|+|.+|...+..|.+.|++|+|++++.. ..++++......+.. ..+....+.++|+||.||.-
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~-~~~~~~~l~~adlViaaT~d 80 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQ-KEFEPSDIVDAFLVIAATND 80 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEe-cCCChhhcCCceEEEEcCCC
Confidence 467899999999999999999999999999999999763 335555441111110 11111134668999988864
No 117
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.49 E-value=0.00084 Score=60.50 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 010050 363 GSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 363 ~~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~ 441 (519)
+.+++||+++|+|.+ -.|+.++..|.+.|+.|++++++-... .+ ...++|+||.+|+..
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l-----------------~~-~v~~ADIVvsAtg~~-- 82 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQL-----------------QS-KVHDADVVVVGSPKP-- 82 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCH-----------------HH-HHhhCCEEEEecCCC--
Confidence 468999999999997 689999999999999999998643211 11 245689999998753
Q ss_pred CCCCCCCCCcccccCCcEEEEEecCC
Q 010050 442 PNTDRVPVSEETLRDYQLVFDAVYTP 467 (519)
Q Consensus 442 ~~~~~~~l~~~~l~~~~~v~Di~Y~P 467 (519)
+ .++.+|++++.+|.|+-.+-
T Consensus 83 ~-----~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 83 E-----KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred C-----ccCHHHcCCCCEEEEcCCCc
Confidence 1 37889999999999887653
No 118
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.38 E-value=0.00033 Score=70.36 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=75.2
Q ss_pred CceEEEEccchhhHHHHHHHHhC--CCeE-EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSR--GARV-VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~--G~~v-~i~nRt~~ka~~La~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
..++.|||.|.+|+.++..|... ++++ .|++|++++++++++.++.. ..+++++ ..+.|+|+.|+|...+.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel----l~~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL----ATHADIVVEAAPASVLR 81 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH----hcCCCEEEECCCcHHHH
Confidence 46899999999999999999863 6765 48999999999999988742 2234443 34579999999865432
Q ss_pred CCCCCCCCcccccCCcEEEEEecC-C-CcCHHHHHHHHcCCcee
Q 010050 443 NTDRVPVSEETLRDYQLVFDAVYT-P-RKTRLLKDAEAAGAIIV 484 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di~Y~-P-~~T~ll~~A~~~G~~~~ 484 (519)
. +....++.+.-++...-. . ..-.+.+.|++.|.++.
T Consensus 82 e-----~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 82 A-----IVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred H-----HHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence 1 223456666555544322 1 13567788899998753
No 119
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.38 E-value=9.8e-05 Score=79.17 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=74.8
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 370 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 370 ~vlvlG-aGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
++.|+| .|.+|++++..|.+.|.+|++++|+.+++++++.+++... ..+..+ ...++|+||-|+|...... .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~--~~~~~e-~~~~aDvVIlavp~~~~~~----v 74 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY--ANDNID-AAKDADIVIISVPINVTED----V 74 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee--ccCHHH-HhccCCEEEEecCHHHHHH----H
Confidence 689998 7999999999999999999999999999888888876532 112222 3456899999998743211 0
Q ss_pred CC--cccccCCcEEEEEecC-CCcCHHHHHHHHcCCceeccHHH
Q 010050 449 VS--EETLRDYQLVFDAVYT-PRKTRLLKDAEAAGAIIVSGVEM 489 (519)
Q Consensus 449 l~--~~~l~~~~~v~Di~Y~-P~~T~ll~~A~~~G~~~~~Gl~m 489 (519)
+. ...++++.+++|+... +.....++.....|..++.+-.|
T Consensus 75 l~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPm 118 (437)
T PRK08655 75 IKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPM 118 (437)
T ss_pred HHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCC
Confidence 11 1235678899999863 21222222222235566665444
No 120
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.0011 Score=71.18 Aligned_cols=44 Identities=34% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH-HHHHHHHH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLAS 409 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~-~ka~~La~ 409 (519)
+++|+++|+|+|++|++++..|.+.|++|++++++. +..++..+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALE 47 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH
Confidence 467999999999999999999999999999999985 33433333
No 121
>PRK08328 hypothetical protein; Provisional
Probab=97.34 E-value=0.00025 Score=69.54 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=36.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLA 408 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La 408 (519)
+.+++|+|+|+||.|..++..|+..|+ +++|++.+.-....|-
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLN 68 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhc
Confidence 457899999999999999999999999 9999987755444443
No 122
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.33 E-value=0.00048 Score=64.97 Aligned_cols=127 Identities=20% Similarity=0.283 Sum_probs=75.8
Q ss_pred CCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcccccc----ccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED----ILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~----l~~~~~~~~divInat~~ 438 (519)
.+++||+++|||-+ -.|+.++..|.+.|+.|++++.+--.-..-...+.....+..+ +.+ ...++||||.|++.
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~-~~~~ADIVIsAvG~ 136 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLD-CLSQSDVVITGVPS 136 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHH-HhhhCCEEEEccCC
Confidence 47999999999998 5999999999999999999963211000000000000000011 222 35779999988864
Q ss_pred CCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceecc-----HHHHHHHHHHHHHH
Q 010050 439 GMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSG-----VEMFLRQAIGQFNL 500 (519)
Q Consensus 439 g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~G-----l~mli~Qa~~qf~l 500 (519)
|+ ..++.++++++.+|+|+-.+-. -. +.+++.--.+.+. .-||+..-+..++.
T Consensus 137 ---~~---~~i~~d~ik~GavVIDVGi~~d-vd--~~v~~~as~iTPvVGpvTva~L~~Nlv~~~~~ 194 (197)
T cd01079 137 ---PN---YKVPTELLKDGAICINFASIKN-FE--PSVKEKASIYVPSIGKVTIAMLLRNLLRLYHN 194 (197)
T ss_pred ---CC---CccCHHHcCCCcEEEEcCCCcC-cc--HhHHhhcCEeCCCcCHHHHHHHHHHHHHHHHH
Confidence 22 1268899999999999976632 11 2333321122332 33777766665543
No 123
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.32 E-value=0.00049 Score=72.86 Aligned_cols=70 Identities=27% Similarity=0.350 Sum_probs=56.0
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~ 437 (519)
+..+.|++|+|+|+|.+|+.++..++..|++|+++++++.|++ .|..+|....+.+ + ....+|++|.||.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~-~A~~~G~~~~~~~---e-~v~~aDVVI~atG 266 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL-QAAMEGYEVMTME---E-AVKEGDIFVTTTG 266 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH-HHHhcCCEEccHH---H-HHcCCCEEEECCC
Confidence 3567899999999999999999999999999999999998864 5666776443333 2 2356899999885
No 124
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.32 E-value=0.0011 Score=72.10 Aligned_cols=96 Identities=27% Similarity=0.289 Sum_probs=62.9
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
+.+++++|+|.|+.|++++..|...|++|+++++..++.+.+ +..+.....-....+ ...++|+||.+..+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~-~l~~~D~VV~SpGi------- 80 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQ-QIADYALVVTSPGF------- 80 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHh-HhhcCCEEEECCCC-------
Confidence 467899999999999999999999999999999876654432 333322111000001 12234555532221
Q ss_pred CCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHH
Q 010050 446 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 491 (519)
Q Consensus 446 ~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli 491 (519)
|...|.+++|+++|++++.-++++.
T Consensus 81 ---------------------~~~~p~~~~a~~~gi~v~~~iel~~ 105 (488)
T PRK03369 81 ---------------------RPTAPVLAAAAAAGVPIWGDVELAW 105 (488)
T ss_pred ---------------------CCCCHHHHHHHHCCCcEeeHHHHhh
Confidence 3346678889999999888888753
No 125
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.32 E-value=0.00041 Score=71.24 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
..++++++.|||.|-+|++++..|...|++|.+.+|+.++..+.+...+....+.+ + ...++|+|+.++|..
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~---e-aa~~ADVVvLaVPd~ 84 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVA---E-AAKWADVIMILLPDE 84 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHH---H-HHhcCCEEEEcCCHH
Confidence 35778999999999999999999999999999999988877777777665433332 2 345678888888753
No 126
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.31 E-value=0.002 Score=70.01 Aligned_cols=38 Identities=37% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
..+.+++|+|+|+|++|++++..|.+.|++|+++++..
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45778999999999999999999999999999998654
No 127
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.30 E-value=0.00029 Score=74.16 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--Cccccc----
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMG--AARPFE---- 419 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt-------------------~~ka~~La~~~~~--~~~~~~---- 419 (519)
+.+++|+|+|+||.|..++..|+..|+ ++++++++ ..|++.+++.+.. ..+.+.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 346789999999999999999999999 99999998 5788888877632 111111
Q ss_pred -----cccccCCCCccEEEECCC
Q 010050 420 -----DILNFQPEKGAILANATP 437 (519)
Q Consensus 420 -----~l~~~~~~~~divInat~ 437 (519)
.+.+ ...++|+||+||-
T Consensus 213 ~~~~~~~~~-~~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEA-LLQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHH-HHhCCCEEEECCC
Confidence 1111 2357999999984
No 128
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.29 E-value=0.00025 Score=76.44 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=72.7
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-C-Cc---cccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 371 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-G-AA---RPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 371 vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~-~-~~---~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
+.|||.|-||.+++..|.+.|++|+++||+.++++++++... . .. .+.+++.+ ..+++|+||-+.|.+..- +
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~-~l~~~dvIil~v~~~~~v--~ 78 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQ-SLERPRKIMLMVKAGAPV--D 78 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHh-hcCCCCEEEEECCCcHHH--H
Confidence 679999999999999999999999999999999999987632 1 11 12233322 235679888888765311 1
Q ss_pred CCCCC--cccccCCcEEEEEec-CCCcC-HHHHHHHHcCCce
Q 010050 446 RVPVS--EETLRDYQLVFDAVY-TPRKT-RLLKDAEAAGAII 483 (519)
Q Consensus 446 ~~~l~--~~~l~~~~~v~Di~Y-~P~~T-~ll~~A~~~G~~~ 483 (519)
. -+. ...+.++.+++|..- .|..| ...++.+++|+..
T Consensus 79 ~-Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~f 119 (467)
T TIGR00873 79 A-VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119 (467)
T ss_pred H-HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEE
Confidence 1 011 123567899999975 45554 3344555566543
No 129
>PLN02256 arogenate dehydrogenase
Probab=97.29 E-value=0.00034 Score=71.43 Aligned_cols=118 Identities=17% Similarity=0.081 Sum_probs=74.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
-++.++.|||+|.+|.+++..|.+.|.+|++++|+.. .+.+..++... +.+..+....++|+||-|+|.......-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~gv~~--~~~~~e~~~~~aDvVilavp~~~~~~vl 109 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELGVSF--FRDPDDFCEEHPDVVLLCTSILSTEAVL 109 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcCCee--eCCHHHHhhCCCCEEEEecCHHHHHHHH
Confidence 3567899999999999999999999999999999964 35556665432 2232221113589999999975322100
Q ss_pred CCCCCcccccCCcEEEEEecCCCcCHHHHHHHHc---CCceeccHHHH
Q 010050 446 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA---GAIIVSGVEMF 490 (519)
Q Consensus 446 ~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~---G~~~~~Gl~ml 490 (519)
..+....++++.++.|+... +...++..++. ++.++.+-.|+
T Consensus 110 -~~l~~~~l~~~~iviDv~Sv--K~~~~~~~~~~l~~~~~~V~~HPma 154 (304)
T PLN02256 110 -RSLPLQRLKRSTLFVDVLSV--KEFPKNLLLQVLPEEFDILCTHPMF 154 (304)
T ss_pred -HhhhhhccCCCCEEEecCCc--hHHHHHHHHHhCCCCCeEEecCCCC
Confidence 01111235678899999874 23344555442 34455544444
No 130
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.28 E-value=0.00036 Score=70.35 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=74.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 449 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l 449 (519)
+|.|||.|-+|.+++.+|.+.|.+|++++|+.++.+.+.+. +.......+. + ...++|+||.|+|.......- ..+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~-~~~~aDlVilavp~~~~~~~~-~~l 77 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER-GLVDEASTDL-S-LLKDCDLVILALPIGLLLPPS-EQL 77 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCcccccCCH-h-HhcCCCEEEEcCCHHHHHHHH-HHH
Confidence 58999999999999999999999999999999887776543 2211011111 1 246789999999864321100 001
Q ss_pred CcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHH
Q 010050 450 SEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 490 (519)
Q Consensus 450 ~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~ml 490 (519)
...++++.++.|+...+ ...++.+.+.+.+++.+-.|.
T Consensus 78 -~~~l~~~~ii~d~~Svk--~~~~~~~~~~~~~~v~~HPm~ 115 (279)
T PRK07417 78 -IPALPPEAIVTDVGSVK--APIVEAWEKLHPRFVGSHPMA 115 (279)
T ss_pred -HHhCCCCcEEEeCcchH--HHHHHHHHHhhCCceeeCCcC
Confidence 12356778999987653 445677766554555544443
No 131
>PLN02494 adenosylhomocysteinase
Probab=97.26 E-value=0.00067 Score=72.38 Aligned_cols=70 Identities=27% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~ 437 (519)
+..+.|++++|+|.|.+|+.++..+...|++|+++++++.++.. +...+....+++ + ....+|++|.||.
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e-A~~~G~~vv~le---E-al~~ADVVI~tTG 318 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ-ALMEGYQVLTLE---D-VVSEADIFVTTTG 318 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH-HHhcCCeeccHH---H-HHhhCCEEEECCC
Confidence 35578999999999999999999999999999999999887543 233333333333 2 2456899998775
No 132
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.25 E-value=0.0011 Score=71.99 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=68.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccc--c-----------ccc---------
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE--D-----------ILN--------- 423 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~--~-----------l~~--------- 423 (519)
..+.+|+|+|+|.+|..++..++.+|++|+++++++++.+ .++++|.....++ + +.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3578999999999999999999999999999999998865 6667876532111 0 000
Q ss_pred c--CCCCccEEEECCCCCCCCCCCCCCCCc---ccccCCcEEEEEecC
Q 010050 424 F--QPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDAVYT 466 (519)
Q Consensus 424 ~--~~~~~divInat~~g~~~~~~~~~l~~---~~l~~~~~v~Di~Y~ 466 (519)
+ ...++|++|+|+.....+. +..+.. +.++++.+++|+...
T Consensus 242 ~~~~~~gaDVVIetag~pg~~a--P~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPA--PKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHhccCCCCEEEECCCCCcccC--cchHHHHHHHhcCCCCEEEEEccC
Confidence 0 1246899999997633221 111222 246788999999864
No 133
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.24 E-value=0.00037 Score=70.21 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=81.8
Q ss_pred ceEEEEccchhhHHHHHHHHhCC----CeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G----~~v~i~nRt~-~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
.++.|||+|-||.+++..|.+.| .+|+++||+. ++++.++..++... ..+..+ ...++|+||-|++......
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~--~~~~~e-~~~~aDvVilav~p~~~~~ 80 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG--THNKKE-LLTDANILFLAMKPKDVAE 80 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE--eCCHHH-HHhcCCEEEEEeCHHHHHH
Confidence 57999999999999999999988 4899999986 47888888776432 122222 2356899999998643221
Q ss_pred CCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHHHHHHHHHHHhcC
Q 010050 444 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 503 (519)
Q Consensus 444 ~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~Qa~~qf~lw~g 503 (519)
.- ..+ ...+.++.+++|+.-.= ....++.....+.+++.+..+.-.+...++-.|.+
T Consensus 81 vl-~~l-~~~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 81 AL-IPF-KEYIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HH-HHH-HhhcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 00 001 12345678999985331 12223444445667777766555444455555543
No 134
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.0013 Score=70.68 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=34.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
+++|+++|+|.|++|++++..|++.|++|++.+++....
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~ 41 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSE 41 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccc
Confidence 467899999999999999999999999999999876443
No 135
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.22 E-value=0.00052 Score=71.08 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=53.3
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCH---------------------HHHHHHHHHhc---CCc----
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF---------------------ERAKSLASDVM---GAA---- 415 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~---------------------~ka~~La~~~~---~~~---- 415 (519)
.+.+++|+|+|+||.|..++..|+..|+ +++|++++. .|++++++.+. ...
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 3567899999999999999999999999 999999974 47777766653 211
Q ss_pred ----cccccccccCCCCccEEEECCC
Q 010050 416 ----RPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 416 ----~~~~~l~~~~~~~~divInat~ 437 (519)
.+.+.+.+ ...++|+||+||-
T Consensus 101 ~~~~~~~~~~~~-~~~~~DlVid~~D 125 (338)
T PRK12475 101 VVTDVTVEELEE-LVKEVDLIIDATD 125 (338)
T ss_pred EeccCCHHHHHH-HhcCCCEEEEcCC
Confidence 01112223 3567999999983
No 136
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.19 E-value=0.00055 Score=68.10 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=65.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA---RVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~---~v~i~nRt~~ka~~La~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
++.|||+|.+|++++..|.+.|. .+.+++|+.++++++++.++ ... ..+..+ ...++|+||-|++......
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~--~~~~~~-~~~~aDvVilav~p~~~~~-- 76 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI--AKDNQA-VVDRSDVVFLAVRPQIAEE-- 76 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE--eCCHHH-HHHhCCEEEEEeCHHHHHH--
Confidence 58999999999999999998884 47899999999999998774 222 122222 2346899999998532111
Q ss_pred CCCCCcccccCCcEEEEEecCCCcCHHHHHHHH
Q 010050 446 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA 478 (519)
Q Consensus 446 ~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~ 478 (519)
-+..-.+.++.+++++. .+.....++....
T Consensus 77 --vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~ 106 (258)
T PRK06476 77 --VLRALRFRPGQTVISVI-AATDRAALLEWIG 106 (258)
T ss_pred --HHHHhccCCCCEEEEEC-CCCCHHHHHHHhC
Confidence 01111234566777755 4444555554443
No 137
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0018 Score=63.33 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=81.3
Q ss_pred ceEEEEccchhhHHHHHHHHhCC--C-eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRG--A-RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G--~-~v~i~nRt~~ka~~La~~~~~~~-------~~~~~l~~~~~~~~divInat~~ 438 (519)
....++|+|--|-..++...+.- . +|.|+||+.+.|+++|+.+.... .....++. ....+|||+.||+.
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~-aV~~sDIIs~atls 217 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNG-AVSNSDIISGATLS 217 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhc-ccccCceEEecccc
Confidence 34567799999888888776553 4 89999999999999999764322 22334444 57789999999985
Q ss_pred CCCCCCCCCCCCcccccCCcEEEEEe--cCCCcCHHHHHHHHcCCceeccHHHHHH
Q 010050 439 GMHPNTDRVPVSEETLRDYQLVFDAV--YTPRKTRLLKDAEAAGAIIVSGVEMFLR 492 (519)
Q Consensus 439 g~~~~~~~~~l~~~~l~~~~~v~Di~--Y~P~~T~ll~~A~~~G~~~~~Gl~mli~ 492 (519)
-. |. +-.+|++|+. -+|++ |.|..-..=.++-+.+|..+|-.+--+.
T Consensus 218 te-Pi-----lfgewlkpgt-hIdlVGsf~p~mhEcDdelIq~a~vfVDsre~aL~ 266 (333)
T KOG3007|consen 218 TE-PI-----LFGEWLKPGT-HIDLVGSFKPVMHECDDELIQSACVFVDSREHALL 266 (333)
T ss_pred CC-ce-----eeeeeecCCc-eEeeeccCCchHHHHhHHHhhhheEEEecchHHhh
Confidence 32 32 4567888874 57887 5566555555666678888888554433
No 138
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.16 E-value=0.0064 Score=59.44 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEE-EEeC----------CHHHHHH
Q 010050 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS 406 (519)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~-i~nR----------t~~ka~~ 406 (519)
-+.|...+++..+... +..+.+++++|.|.|..|+.++..|.+.|++|+ |.+. +.++..+
T Consensus 10 Tg~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 10 TGRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred chHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 3578888887766522 256889999999999999999999999999766 7777 6777666
Q ss_pred HHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHc
Q 010050 407 LASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA 479 (519)
Q Consensus 407 La~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~ 479 (519)
+.+..+.. .++.+++ ...++|++|-|+..+.... .. ...+ ...+|+.-.-+|....--+.-+++
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i---~~~~~Dvlip~a~~~~i~~---~~--~~~l-~a~~I~egAN~~~t~~a~~~L~~r 151 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEEL---LELDCDILIPAALENQITA---DN--ADRI-KAKIIVEAANGPTTPEADEILHER 151 (227)
T ss_pred HHHhcCCcccCCCceecCCccc---eeecccEEEecCccCccCH---HH--Hhhc-eeeEEEeCCCCCCCHHHHHHHHHC
Confidence 66655421 1122222 1236899998886543211 00 1122 245777777677632233344567
Q ss_pred CCceeccHHHH
Q 010050 480 GAIIVSGVEMF 490 (519)
Q Consensus 480 G~~~~~Gl~ml 490 (519)
|+.+++..-..
T Consensus 152 Gi~~~PD~~aN 162 (227)
T cd01076 152 GVLVVPDILAN 162 (227)
T ss_pred CCEEEChHHhc
Confidence 88776655433
No 139
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.15 E-value=0.00048 Score=74.32 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=72.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh---cCCcccccccccc--CCCCccEEEECCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGAARPFEDILNF--QPEKGAILANATPLGMHPNT 444 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~---~~~~~~~~~l~~~--~~~~~divInat~~g~~~~~ 444 (519)
++.|||.|-||.+++..|.+.|++|+++||++++++++.+.- +.......++.++ .++++|+||-+.+.+.. +
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~--v 80 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA--V 80 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH--H
Confidence 689999999999999999999999999999999999987642 2111112233221 22357877766554421 0
Q ss_pred CCCCCC--cccccCCcEEEEEecC-CCcC-HHHHHHHHcCCce
Q 010050 445 DRVPVS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAII 483 (519)
Q Consensus 445 ~~~~l~--~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~ 483 (519)
+.. +. ...+.++.+++|..-. |..| ...++.+++|..+
T Consensus 81 ~~v-i~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 81 DET-IDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILY 122 (470)
T ss_pred HHH-HHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence 110 11 1235678999999765 4554 3445566666554
No 140
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.15 E-value=0.00092 Score=61.52 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=49.6
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
.+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+ ..+++.+ ++........+.+..+.++|+||-||.-
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-ccCcEEEecccChhcCCCceEEEECCCC
Confidence 5688999999999999999999999999999999644 3444433 2211111112222135678999988853
No 141
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.14 E-value=0.0012 Score=64.16 Aligned_cols=72 Identities=32% Similarity=0.381 Sum_probs=56.2
Q ss_pred CCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC-C--c--cccccc----------cccCCCCc
Q 010050 366 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-A--A--RPFEDI----------LNFQPEKG 429 (519)
Q Consensus 366 ~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~-~--~--~~~~~l----------~~~~~~~~ 429 (519)
+++|-++|-||. |.|.+++..|.+.|++|.+..|..++.++|+.+++. . . .++.+. .+ ...+.
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~-~~g~i 82 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPE-EFGRI 82 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHH-hhCcc
Confidence 456889999996 999999999999999999999999999999999983 2 1 122221 11 34568
Q ss_pred cEEEECCCC
Q 010050 430 AILANATPL 438 (519)
Q Consensus 430 divInat~~ 438 (519)
|++||.-.+
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999996643
No 142
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.14 E-value=0.00094 Score=70.52 Aligned_cols=69 Identities=30% Similarity=0.379 Sum_probs=53.8
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~ 437 (519)
..+.|++++|+|+|.+|+.++..++..|++|+++++++.++... ...|....+.+ + ....+|++|.+|+
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~~~G~~v~~le---e-al~~aDVVItaTG 259 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-AMDGFRVMTME---E-AAKIGDIFITATG 259 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-HhcCCEeCCHH---H-HHhcCCEEEECCC
Confidence 45789999999999999999999999999999999999886443 33344333333 2 2456899998875
No 143
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.13 E-value=0.00075 Score=62.03 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=50.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-CCcc----------ccccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAAR----------PFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~-~~~~----------~~~~l~~~~~~~~divInat~~ 438 (519)
+|.|+|+|..|.|++..|+..|.+|+++.|+.+..+.+-+.-. ..+. -..++++ ..+++|+||-++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~-a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEE-ALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHH-HHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHH-HhCcccEEEecccH
Confidence 5899999999999999999999999999999998888866432 1110 0123333 35678999999986
Q ss_pred C
Q 010050 439 G 439 (519)
Q Consensus 439 g 439 (519)
-
T Consensus 80 ~ 80 (157)
T PF01210_consen 80 Q 80 (157)
T ss_dssp G
T ss_pred H
Confidence 3
No 144
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.12 E-value=0.00079 Score=68.50 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=54.9
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
..+++|++.|||.|-+|++++..|...|++|.+++|. .++.+.+...+....+++ + ..+++|+|+.+.|.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~---E-aak~ADVV~llLPd 81 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVS---E-AVRTAQVVQMLLPD 81 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHH---H-HHhcCCEEEEeCCC
Confidence 4578999999999999999999999999999999986 555556666555433333 3 35678999998885
No 145
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.11 E-value=0.00094 Score=65.70 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=53.4
Q ss_pred CceEEEEccchhhHHHHHHHHhCC---C-eEEEEeC-CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRG---A-RVVIFDI-DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G---~-~v~i~nR-t~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~ 440 (519)
+.++.|||+|.+|++++..|.+.| . +|++++| +.++++++++.++... ..+..+ ...++|+||.|+|...
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~DiViiavp~~~ 78 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST--TTDWKQ-HVTSVDTIVLAMPPSA 78 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE--eCChHH-HHhcCCEEEEecCHHH
Confidence 468999999999999999998876 3 3888998 4789999988876432 123323 2456899999999754
No 146
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.09 E-value=0.00086 Score=63.91 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=61.9
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 447 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~k-a~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~ 447 (519)
+++.|+|+|-+|.+++..|.+.|++|.|-+|..++ .+++++.++......+ ..+ ..+.+|+||-|+|....|.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~-~~d-A~~~aDVVvLAVP~~a~~~---- 75 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGS-NED-AAALADVVVLAVPFEAIPD---- 75 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCC-hHH-HHhcCCEEEEeccHHHHHh----
Confidence 47899999999999999999999999999776655 4555666655432222 122 3466899999998654332
Q ss_pred CCCcc---cccCCcEEEEEecCC
Q 010050 448 PVSEE---TLRDYQLVFDAVYTP 467 (519)
Q Consensus 448 ~l~~~---~l~~~~~v~Di~Y~P 467 (519)
+..+ .+ .+++|+|.. +|
T Consensus 76 -v~~~l~~~~-~~KIvID~t-np 95 (211)
T COG2085 76 -VLAELRDAL-GGKIVIDAT-NP 95 (211)
T ss_pred -HHHHHHHHh-CCeEEEecC-CC
Confidence 1112 23 368888886 55
No 147
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.07 E-value=0.0007 Score=69.94 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
..+.|+++.|||.|.+|++++..|+..|++|+.++|+.+......+ . ..++.+ ...++|+|+.++|..-..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~-----~--~~~l~e-ll~~aDiVil~lP~t~~t- 212 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT-----Y--KDSVKE-AIKDADIISLHVPANKES- 212 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhh-----c--cCCHHH-HHhcCCEEEEeCCCcHHH-
Confidence 3578899999999999999999999999999999999765332111 1 112333 356789999999864210
Q ss_pred CCCCCCCcc---cccCCcEEEEEecCCC-cCHHHHHHHHcCCceeccHHHH
Q 010050 444 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF 490 (519)
Q Consensus 444 ~~~~~l~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~~~Gl~ml 490 (519)
...+..+ .++++.+++++.=.+. ++.-+..|-+.|.-.--|++.+
T Consensus 213 --~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~ 261 (330)
T PRK12480 213 --YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261 (330)
T ss_pred --HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence 0112222 3467788888876544 4666666667665544555554
No 148
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.05 E-value=0.00055 Score=71.58 Aligned_cols=117 Identities=23% Similarity=0.252 Sum_probs=73.7
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~--~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
+++.|||.|-+|.+++.+|.+.|.++.+++|+.++.+ ++...+....+ ..++.+ ...++|+||-|+|.......-
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~aDlVilavP~~~~~~vl- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQ-LARALGFGVIDELAADLQR-AAAEADLIVLAVPVDATAALL- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHHhcCCCCcccccCHHH-HhcCCCEEEEeCCHHHHHHHH-
Confidence 3689999999999999999999998889998877643 33332222111 122233 346799999999975321100
Q ss_pred CCCCcccccCCcEEEEEecCCCcCHHHHHHHH---cCCceeccHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF 490 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~~~Gl~ml 490 (519)
..+....++++.++.|+.... ...++.+++ .+.++++|-.|.
T Consensus 78 ~~l~~~~l~~~~ivtDv~SvK--~~i~~~~~~~~~~~~~~ig~HPMa 122 (359)
T PRK06545 78 AELADLELKPGVIVTDVGSVK--GAILAEAEALLGDLIRFVGGHPMA 122 (359)
T ss_pred HHHhhcCCCCCcEEEeCcccc--HHHHHHHHHhcCCCCeEEeeCCcC
Confidence 001111256778999987653 334455555 355677776664
No 149
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.05 E-value=0.00086 Score=68.10 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=70.2
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV 449 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l 449 (519)
++.|||.|-||.+++..|.+.|++|+++||++. ++.+++ .+... .....+ ...++|+||-+.|-.- ......+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~-~g~~~--~~s~~~-~~~~advVi~~v~~~~--~v~~v~~ 74 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLS-LGAVS--VETARQ-VTEASDIIFIMVPDTP--QVEEVLF 74 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHH-cCCee--cCCHHH-HHhcCCEEEEeCCChH--HHHHHHc
Confidence 588999999999999999999999999999974 566543 33321 112222 2456899999887531 1011001
Q ss_pred Cc----ccccCCcEEEEEecC-CCcCH-HHHHHHHcCCceec
Q 010050 450 SE----ETLRDYQLVFDAVYT-PRKTR-LLKDAEAAGAIIVS 485 (519)
Q Consensus 450 ~~----~~l~~~~~v~Di~Y~-P~~T~-ll~~A~~~G~~~~~ 485 (519)
.. ..+.++.+++|+... |..+. +.+.++++|..+++
T Consensus 75 ~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 75 GENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred CCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 124568899999876 44333 45666677776544
No 150
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.05 E-value=0.001 Score=64.41 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=50.9
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCH------------------HHHHHHHHHhcC--Ccccc-----
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF------------------ERAKSLASDVMG--AARPF----- 418 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~------------------~ka~~La~~~~~--~~~~~----- 418 (519)
.+++++|+|+|+||+|..++..|...|+ ++++++.+. .|++.+++.+.. ..+.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 3567899999999999999999999999 899999872 477777665531 11111
Q ss_pred ----ccccccCCCCccEEEECC
Q 010050 419 ----EDILNFQPEKGAILANAT 436 (519)
Q Consensus 419 ----~~l~~~~~~~~divInat 436 (519)
+++.+ ...++|+||+|+
T Consensus 105 ~i~~~~~~~-~~~~~DvVI~a~ 125 (212)
T PRK08644 105 KIDEDNIEE-LFKDCDIVVEAF 125 (212)
T ss_pred ecCHHHHHH-HHcCCCEEEECC
Confidence 11112 245689999985
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.04 E-value=0.0017 Score=66.31 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=48.2
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
..+.||++.|+|.|.+|++++..|+..|++|..++|+.... +... ...++++ ...++|+|+++.|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~-~~~~l~e-ll~~aDiv~~~lp~t 184 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------GISS-IYMEPED-IMKKSDFVLISLPLT 184 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------Cccc-ccCCHHH-HHhhCCEEEECCCCC
Confidence 35789999999999999999999988999999999985321 1110 0123333 345678888887753
No 152
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.04 E-value=0.00075 Score=68.33 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=71.2
Q ss_pred EEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCC-c
Q 010050 373 LAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS-E 451 (519)
Q Consensus 373 vlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~-~ 451 (519)
|||.|-||.+++..|.+.|.+|+++||+.++.+.+.+. +... ..+..+ ...++|+||-+.|.... .....+. .
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~~-~~~~advVil~vp~~~~--~~~v~~g~~ 74 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA-GAQA--AASPAE-AAEGADRVITMLPAGQH--VISVYSGDE 74 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEeCCChHH--HHHHHcCcc
Confidence 58999999999999999999999999999999888653 3221 112222 34568999999986321 0000000 1
Q ss_pred ---ccccCCcEEEEEecCCCc-CH-HHHHHHHcCCceec
Q 010050 452 ---ETLRDYQLVFDAVYTPRK-TR-LLKDAEAAGAIIVS 485 (519)
Q Consensus 452 ---~~l~~~~~v~Di~Y~P~~-T~-ll~~A~~~G~~~~~ 485 (519)
..+.++.+++|+...... +. +-+.++++|+.+++
T Consensus 75 ~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 75 GILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 134677899999976443 33 33455667877665
No 153
>PLN02712 arogenate dehydrogenase
Probab=97.03 E-value=0.00053 Score=77.15 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=72.0
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
..+.++++.|||.|.+|++++.+|.+.|.+|++++|+... +.+.++|... ..++.++...++|+||-|+|......
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~--~~a~~~Gv~~--~~~~~el~~~~aDvVILavP~~~~~~ 440 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS--DEAQKLGVSY--FSDADDLCEEHPEVILLCTSILSTEK 440 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH--HHHHHcCCeE--eCCHHHHHhcCCCEEEECCChHHHHH
Confidence 3456789999999999999999999999999999999653 2344555421 22222211124799999999643221
Q ss_pred CCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHH---cCCceec
Q 010050 444 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVS 485 (519)
Q Consensus 444 ~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~~~ 485 (519)
.- ..+....++++.+++|+.... +..++.+++ .|..++.
T Consensus 441 vi-~~l~~~~lk~g~ivvDv~SvK--~~~~~~~~~~l~~~~~~v~ 482 (667)
T PLN02712 441 VL-KSLPFQRLKRSTLFVDVLSVK--EFPRNLFLQHLPQDFDILC 482 (667)
T ss_pred HH-HHHHHhcCCCCcEEEECCCcc--HHHHHHHHHhccCCCceEe
Confidence 00 001112356788999997653 233344443 4555553
No 154
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.02 E-value=0.00096 Score=69.01 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=78.4
Q ss_pred CCCCCceEEEEccchhhHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L-~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
..+.|+++.|||.|.+|++++..| ...|++|+.++|+..+.. . .. ... ..++++ ...++|+|+.++|..-..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-~~~--~~~l~e-ll~~aDvIvl~lP~t~~t 214 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-VDY--KDTIEE-AVEGADIVTLHMPATKYN 214 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-ccc--cCCHHH-HHHhCCEEEEeCCCCcch
Confidence 357899999999999999999999 556889999999875431 1 11 111 123333 346789999999875321
Q ss_pred CCCCCCCCc---ccccCCcEEEEEecCCC-cCHHHHHHHHcCCceeccHHHH
Q 010050 443 NTDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF 490 (519)
Q Consensus 443 ~~~~~~l~~---~~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~~~Gl~ml 490 (519)
...+.. +.++++.+++++.=.+. +|.-+-.|-+.|.-.--|++.+
T Consensus 215 ---~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 263 (332)
T PRK08605 215 ---HYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTY 263 (332)
T ss_pred ---hhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence 112333 34578899999987644 5776777777776544555554
No 155
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.01 E-value=0.0007 Score=59.95 Aligned_cols=107 Identities=23% Similarity=0.227 Sum_probs=62.8
Q ss_pred CceEEEEccchhhHHHHHHHHhCCCeE-EEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGARV-VIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~~v-~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
.-++.|||+|.+|.+++.+|.+.|+.| -|++|+.+.++.++..++... ..++.+ ....+|+++-|+|-..-+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~--~~~~~~-~~~~aDlv~iavpDdaI~---- 82 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA--ILDLEE-ILRDADLVFIAVPDDAIA---- 82 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-------TTG-GGCC-SEEEE-S-CCHHH----
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc--cccccc-ccccCCEEEEEechHHHH----
Confidence 358999999999999999999999965 567999999999888776432 222223 245689999999742211
Q ss_pred CCCCcc-----cccCCcEEEEEecCCCcCHHHHHHHHcCCce
Q 010050 447 VPVSEE-----TLRDYQLVFDAVYTPRKTRLLKDAEAAGAII 483 (519)
Q Consensus 447 ~~l~~~-----~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~ 483 (519)
++..+ .+.++.+|+=.+= -.....|+-++++|+.+
T Consensus 83 -~va~~La~~~~~~~g~iVvHtSG-a~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 83 -EVAEQLAQYGAWRPGQIVVHTSG-ALGSDVLAPARERGAIV 122 (127)
T ss_dssp -HHHHHHHCC--S-TT-EEEES-S-S--GGGGHHHHHTT-EE
T ss_pred -HHHHHHHHhccCCCCcEEEECCC-CChHHhhhhHHHCCCeE
Confidence 01111 2446777765542 23456678888888865
No 156
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.0019 Score=65.45 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=56.8
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCC--c----ccccc---cccc------CCC
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--A----RPFED---ILNF------QPE 427 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~--~----~~~~~---l~~~------~~~ 427 (519)
.++++++++|.|+ ||.|++++..|.+.|++|.+++|+.+++++++++++.. . .++.+ +.++ ...
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578899999987 79999999999999999999999999999998887521 1 12211 1110 124
Q ss_pred CccEEEECCCCC
Q 010050 428 KGAILANATPLG 439 (519)
Q Consensus 428 ~~divInat~~g 439 (519)
..|++||+....
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 579999987653
No 157
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.00 E-value=0.001 Score=66.56 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=71.5
Q ss_pred eEEEEccchhhHHHHHHHHhCC--Ce-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G--~~-v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
++.|||+|.+|+.++.++.+.+ ++ +.+++|+.++++.+++.++.. .+.+++++ ..+.|+|+.|+|.....
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~--~~~~~~el-l~~~DvVvi~a~~~~~~---- 75 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAK--ACLSIDEL-VEDVDLVVECASVNAVE---- 75 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCe--eECCHHHH-hcCCCEEEEcCChHHHH----
Confidence 6899999999999999998764 54 778999999999998877643 22333332 35789999998754321
Q ss_pred CCCCcccccCCcEEEEEec----C-CCcCHHHHHHHHcCCc
Q 010050 447 VPVSEETLRDYQLVFDAVY----T-PRKTRLLKDAEAAGAI 482 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y----~-P~~T~ll~~A~~~G~~ 482 (519)
.+-...++.+.-++.+.- . +....+.+.|++.|.+
T Consensus 76 -~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 76 -EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred -HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 122334555544444432 1 1234777888888876
No 158
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.97 E-value=0.0015 Score=67.26 Aligned_cols=90 Identities=23% Similarity=0.119 Sum_probs=62.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-------cCC----ccccccccccCCCCccEEEECCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-------MGA----ARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~-------~~~----~~~~~~l~~~~~~~~divInat~ 437 (519)
.++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.- +.. .....++.+ ..+.+|+||-++|
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e-~~~~aD~Vi~~v~ 83 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEE-ALAGADFAVVAVP 83 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHH-HHcCCCEEEEECc
Confidence 5799999999999999999999999999999999988887542 110 111122222 2457899999988
Q ss_pred CCCCCCCCCCCCCcccccCCcEEEEEec
Q 010050 438 LGMHPNTDRVPVSEETLRDYQLVFDAVY 465 (519)
Q Consensus 438 ~g~~~~~~~~~l~~~~l~~~~~v~Di~Y 465 (519)
...... + .+.++++.+++++.-
T Consensus 84 ~~~~~~-----v-~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 84 SKALRE-----T-LAGLPRALGYVSCAK 105 (328)
T ss_pred hHHHHH-----H-HHhcCcCCEEEEEee
Confidence 642110 0 023456677888865
No 159
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.97 E-value=0.0014 Score=65.92 Aligned_cols=119 Identities=8% Similarity=0.157 Sum_probs=76.2
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 444 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~----~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~ 444 (519)
.++.+||+|-||.+++..|.+.|. +|++++|+.++++.++++++... ..+..+ ...++|+||-|++.......
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~--~~~~~e-~~~~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI--TTNNNE-VANSADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE--eCCcHH-HHhhCCEEEEEeChHHHHHH
Confidence 479999999999999999999873 69999999999999888776432 122222 23568999999885332110
Q ss_pred CCCCCCc--ccccCCcEEEEEecCCCcCHHHHHHHHcCC---ceeccHHHHHHHHH
Q 010050 445 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMFLRQAI 495 (519)
Q Consensus 445 ~~~~l~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~---~~~~Gl~mli~Qa~ 495 (519)
+.. ..++++.+++|+.-. ....-++..-...+ ++++-....+.++.
T Consensus 80 ----l~~l~~~~~~~~lvISi~AG-i~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~ 130 (272)
T PRK12491 80 ----INQIKDQIKNDVIVVTIAAG-KSIKSTENEFDRKLKVIRVMPNTPVLVGEGM 130 (272)
T ss_pred ----HHHHHHhhcCCcEEEEeCCC-CcHHHHHHhcCCCCcEEEECCChHHHHcCce
Confidence 110 124566788888754 12222333222222 35666666666554
No 160
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.97 E-value=0.0021 Score=60.53 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.1
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 408 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La 408 (519)
+|.|+|+|-||+.++..++..|++|.+++++.+..++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence 588999999999999999999999999999998765543
No 161
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=96.96 E-value=0.012 Score=62.97 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=120.4
Q ss_pred ccCCCcccCCHHHHHHHHHHcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhccC------H
Q 010050 244 ISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVH------P 312 (519)
Q Consensus 244 iG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~------~ 312 (519)
+|+--..+.-=.|-.++.+..|+++.|.+++-+ ++-.-+..+ .++...|+.|-.|+- .++|+-+ |
T Consensus 42 VGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell~~I~~lNeD~tvHGiiVQLPLp----~hide~~Vt~aI~p 117 (935)
T KOG4230|consen 42 VGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLP----AHIDEDTVTEAIDP 117 (935)
T ss_pred ecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHHHHHHHhccCCCccceEEEeccCc----cccchhhHhhccCc
Confidence 454444444456778899999999999998852 333334445 466799999999976 3333311 0
Q ss_pred --HHhhccceeEEEEecCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhhHHHHHHHHh
Q 010050 313 --LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKS 389 (519)
Q Consensus 313 --~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaG-gaarai~~~L~~ 389 (519)
.+.-.+..|.=...+.+|+-+=+-.--.|++..|++. +..++|++++|+|-. -.|+.+++-|..
T Consensus 118 eKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a-------------~v~v~Gk~aVVlGRS~IVG~Pia~LL~~ 184 (935)
T KOG4230|consen 118 EKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEA-------------GVFVAGKNAVVLGRSKIVGSPIAALLLW 184 (935)
T ss_pred ccccccccccchhhhhccCCCceeeccChHHHHHHHHHc-------------CCccccceeEEEecccccCChHHHHHHh
Confidence 0111223332111111444445556678888876542 367899999999986 688999999999
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEE--ecCC
Q 010050 390 RGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA--VYTP 467 (519)
Q Consensus 390 ~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di--~Y~P 467 (519)
..+.|+++-- +.+.|++ ...++||||-|+.. |+ .+-.+|++|+.+|+|+ +|.|
T Consensus 185 ~NaTVTiCHS---KT~~lae---------------~v~~ADIvIvAiG~---Pe----fVKgdWiKpGavVIDvGINyvp 239 (935)
T KOG4230|consen 185 ANATVTICHS---KTRNLAE---------------KVSRADIVIVAIGQ---PE----FVKGDWIKPGAVVIDVGINYVP 239 (935)
T ss_pred cCceEEEecC---CCccHHH---------------HhccCCEEEEEcCC---cc----eeecccccCCcEEEEccccccC
Confidence 8889998743 2223332 24568999988864 22 2556899999999997 6767
Q ss_pred CcC
Q 010050 468 RKT 470 (519)
Q Consensus 468 ~~T 470 (519)
..+
T Consensus 240 D~~ 242 (935)
T KOG4230|consen 240 DPS 242 (935)
T ss_pred CCC
Confidence 654
No 162
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.95 E-value=0.0013 Score=68.05 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=33.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~ 401 (519)
+.+++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 567899999999999999999999999 999999863
No 163
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.94 E-value=0.0007 Score=69.35 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
..++++++.|+|.|.+|+.++..|...|++|..++|+.++..... . ..+..++.+ ...++|+|+.+.|.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~-~----~~~~~~l~e-~l~~aDvvv~~lPl 200 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ-S----FAGREELSA-FLSQTRVLINLLPN 200 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce-e----ecccccHHH-HHhcCCEEEECCCC
Confidence 357789999999999999999999999999999999865432111 0 112233333 34567888888775
No 164
>PLN02712 arogenate dehydrogenase
Probab=96.93 E-value=0.0011 Score=74.68 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=74.7
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
+.+++.|||.|.+|++++.+|.+.|++|++++|+..+ ..+.+++... ..+..++...++|+||-|+|.......-.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~--~~A~~~Gv~~--~~d~~e~~~~~aDvViLavP~~~~~~vl~ 126 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS--LAARSLGVSF--FLDPHDLCERHPDVILLCTSIISTENVLK 126 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHcCCEE--eCCHHHHhhcCCCEEEEcCCHHHHHHHHH
Confidence 4478999999999999999999999999999998554 3456665432 22222212245899999999743221100
Q ss_pred CCCCcccccCCcEEEEEecCCCcCHHHHHHHH---cCCceeccHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF 490 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~~~Gl~ml 490 (519)
.+....++++.+++|+... .+..++..++ .|+.++.+-.|+
T Consensus 127 -~l~~~~l~~g~iVvDv~Sv--K~~~~~~l~~~l~~~~~~v~~HPMa 170 (667)
T PLN02712 127 -SLPLQRLKRNTLFVDVLSV--KEFAKNLLLDYLPEDFDIICSHPMF 170 (667)
T ss_pred -hhhhhcCCCCeEEEECCCC--cHHHHHHHHHhcCCCCeEEeeCCcC
Confidence 1111235678899999643 4444444443 355566666555
No 165
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.92 E-value=0.0012 Score=68.89 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=52.0
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCH-------------------HHHHHHHHHhcC--Ccccc-----
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF-------------------ERAKSLASDVMG--AARPF----- 418 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~-------------------~ka~~La~~~~~--~~~~~----- 418 (519)
+++++|+|+|+||.|..++..|+..|+ +++|++++. .|++.+++.+.. ..+.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 567899999999999999999999999 999988764 577777776632 11111
Q ss_pred ----ccccccCCCCccEEEECCC
Q 010050 419 ----EDILNFQPEKGAILANATP 437 (519)
Q Consensus 419 ----~~l~~~~~~~~divInat~ 437 (519)
++..+ ...++|+||+|+-
T Consensus 106 ~i~~~~~~~-~~~~~DvVvd~~d 127 (355)
T PRK05597 106 RLTWSNALD-ELRDADVILDGSD 127 (355)
T ss_pred ecCHHHHHH-HHhCCCEEEECCC
Confidence 11112 2467999999983
No 166
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.91 E-value=0.0017 Score=60.72 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=30.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCCH
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~ 401 (519)
+|+|+|+||+|..+++.|+..|+ ++++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 899999875
No 167
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.90 E-value=0.019 Score=55.64 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCH----------HHHHHH
Q 010050 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF----------ERAKSL 407 (519)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~----------~ka~~L 407 (519)
+.|...+++..++.. +.++++++++|.|.|..|+.++..|.+.|+ .|.|.+.+. +..+..
T Consensus 3 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~ 73 (217)
T cd05211 3 GYGVVVAMKAAMKHL---------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYA 73 (217)
T ss_pred hhHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHH
Confidence 567777777766522 256889999999999999999999999999 688888776 544433
Q ss_pred HHHhcCCcccc-ccc--cccCCCCccEEEECCCCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCcee
Q 010050 408 ASDVMGAARPF-EDI--LNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV 484 (519)
Q Consensus 408 a~~~~~~~~~~-~~l--~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~ 484 (519)
.+..+....+- +.+ +++...++|++|-|+.-+.- +..+ ...+ ...+|+.-.-+|....--+.-+++|..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i---~~~~--a~~l-~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~ 147 (217)
T cd05211 74 VALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVI---DLEN--AKKL-KAKVVAEGANNPTTDEALRILHERGIVVA 147 (217)
T ss_pred HhhCCccccCcccccCcccceeccccEEeeccccCcc---Chhh--Hhhc-CccEEEeCCCCCCCHHHHHHHHHCCcEEE
Confidence 33322211111 111 11112368999988875432 1111 1112 24567777766653333333356788887
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 010050 485 SGVEMFLRQAIGQFNLFT 502 (519)
Q Consensus 485 ~Gl~mli~Qa~~qf~lw~ 502 (519)
|..-+....-+.++-=|.
T Consensus 148 Pd~~~NaGGvi~s~~E~~ 165 (217)
T cd05211 148 PDIVANAGGVIVSYFEWV 165 (217)
T ss_pred ChHHhcCCCeEeEHHHhc
Confidence 777665443333333343
No 168
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.90 E-value=0.0017 Score=62.27 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=33.3
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
.+..++|+|+|+||+|..++..|+..|+ +|++++++
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3667899999999999999999999999 89999987
No 169
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.90 E-value=0.0018 Score=55.20 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~ 437 (519)
.++++++++|+|+|..|..-+..|.+.|++|+|+..+.+..+ +.+......+ ++ ...++++|+.||.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~---~~i~~~~~~~---~~-~l~~~~lV~~at~ 69 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE---GLIQLIRREF---EE-DLDGADLVFAATD 69 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH---TSCEEEESS----GG-GCTTESEEEE-SS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh---hHHHHHhhhH---HH-HHhhheEEEecCC
Confidence 357899999999999999999999999999999999972222 1111000112 22 3466889998885
No 170
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0019 Score=64.28 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=53.7
Q ss_pred ceEEEEccchhhHHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G----~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
.++.+||+|-||++++..|.+.| .+|+|+||+.++++.++++|+... ..+... ...++|+|+-|..+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~--~~~~~~-~~~~advv~LavKP 72 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVT--TTDNQE-AVEEADVVFLAVKP 72 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcc--cCcHHH-HHhhCCEEEEEeCh
Confidence 46899999999999999999999 389999999999999999998763 222112 34568888887754
No 171
>PRK07574 formate dehydrogenase; Provisional
Probab=96.89 E-value=0.0012 Score=69.43 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=51.7
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
..+.|+++.|+|.|.+|+.++..|+..|++|..++|+.... .....++... ..++++ ...++|+|+.+.|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~-~~~~~~g~~~--~~~l~e-ll~~aDvV~l~lPl 258 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPE-EVEQELGLTY--HVSFDS-LVSVCDVVTIHCPL 258 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCch-hhHhhcCcee--cCCHHH-HhhcCCEEEEcCCC
Confidence 35789999999999999999999999999999999986332 2333333321 123333 34668999888885
No 172
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.86 E-value=0.0016 Score=65.82 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 409 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~ 409 (519)
++|.|||+|-+|++++..|++.|++|++++|++++.+++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 47999999999999999999999999999999998887654
No 173
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.0028 Score=64.26 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=43.6
Q ss_pred CCCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 363 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 363 ~~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
...+.+++++|+|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l 84 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI 84 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35567899999987 79999999999999999999999999988887765
No 174
>PLN03139 formate dehydrogenase; Provisional
Probab=96.81 E-value=0.0014 Score=68.83 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC---
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM--- 440 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~--- 440 (519)
..+.||++.|+|.|.+|+.++..|+..|++|..++|+....+ .....+... .+++++ ...++|+|+.+.|..-
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~-~~~~~g~~~--~~~l~e-ll~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE-LEKETGAKF--EEDLDA-MLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh-hHhhcCcee--cCCHHH-HHhhCCEEEEeCCCCHHHH
Confidence 468899999999999999999999999999999999854332 223333322 123333 3456899998887521
Q ss_pred -----------CCCC-----CC-CCCCcc----cccCC---cEEEEEecC-C--CcCHHHHHHHH-----cCCceeccHH
Q 010050 441 -----------HPNT-----DR-VPVSEE----TLRDY---QLVFDAVYT-P--RKTRLLKDAEA-----AGAIIVSGVE 488 (519)
Q Consensus 441 -----------~~~~-----~~-~~l~~~----~l~~~---~~v~Di~Y~-P--~~T~ll~~A~~-----~G~~~~~Gl~ 488 (519)
.+.. .. ..++.+ .|+.+ ...+|+-+. | .+.||...-.- .+..+.+...
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQL 350 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHH
Confidence 1100 00 001111 23333 346788775 3 34566432100 1333444455
Q ss_pred HHHHHHHHHHHHhc-CCCCC
Q 010050 489 MFLRQAIGQFNLFT-GKEAP 507 (519)
Q Consensus 489 mli~Qa~~qf~lw~-g~~~~ 507 (519)
-+..+++++++.|. |++.+
T Consensus 351 r~~~~~~~nl~~~~~G~~~~ 370 (386)
T PLN03139 351 RYAAGVKDMLDRYFKGEDFP 370 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 66777888888876 55543
No 175
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.80 E-value=0.0018 Score=65.14 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=71.9
Q ss_pred eEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 447 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~ 447 (519)
++.|||.|.+|.+++..|.+.|. +|++++|+.++++.+. ..+... ...+..+ ..++|+||-|+|.......- .
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-~~g~~~-~~~~~~~--~~~aD~Vilavp~~~~~~~~-~ 76 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-ELGLVD-EIVSFEE--LKKCDVIFLAIPVDAIIEIL-P 76 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-HCCCCc-ccCCHHH--HhcCCEEEEeCcHHHHHHHH-H
Confidence 58999999999999999999986 7999999998877654 444311 1112222 23489999999875432100 0
Q ss_pred CCCcccccCCcEEEEEecCCCcCHHHHHHHHc-CCceeccHHH
Q 010050 448 PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA-GAIIVSGVEM 489 (519)
Q Consensus 448 ~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~-G~~~~~Gl~m 489 (519)
.+. . ++++.+++|+... ...+.+.+.+. +..++.+-.|
T Consensus 77 ~l~-~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPm 115 (275)
T PRK08507 77 KLL-D-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPM 115 (275)
T ss_pred HHh-c-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCc
Confidence 111 2 5677899997553 44555655543 3456666565
No 176
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.78 E-value=0.002 Score=67.57 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=51.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--Cccccc----
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMG--AARPFE---- 419 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt-------------------~~ka~~La~~~~~--~~~~~~---- 419 (519)
+.+++|+|+|+||.|..++..|+..|+ +|+|++++ ..|++.+++.+.. ..+.++
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 557899999999999999999999999 99998876 3577777766631 111111
Q ss_pred -----cccccCCCCccEEEECCC
Q 010050 420 -----DILNFQPEKGAILANATP 437 (519)
Q Consensus 420 -----~l~~~~~~~~divInat~ 437 (519)
.+.+ ..+++|+||+|+-
T Consensus 119 ~i~~~~~~~-~~~~~DlVid~~D 140 (370)
T PRK05600 119 RLTAENAVE-LLNGVDLVLDGSD 140 (370)
T ss_pred ecCHHHHHH-HHhCCCEEEECCC
Confidence 1112 2467999999884
No 177
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0028 Score=63.43 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPLGMH 441 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~l~~~~~~~~divInat~~g~~ 441 (519)
....+++|||.|-+|.-+++-...+|++|+|.+++.+|.+.|-..|+... .+...+++ ...++|++|++.=++-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee-~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEE-AVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHH-HhhhccEEEEEEEecCC
Confidence 34567999999999999999999999999999999999999999888652 23334444 56789999998844321
Q ss_pred CCCCCCCCCcc---cccCCcEEEEEecC
Q 010050 442 PNTDRVPVSEE---TLRDYQLVFDAVYT 466 (519)
Q Consensus 442 ~~~~~~~l~~~---~l~~~~~v~Di~Y~ 466 (519)
. .+..+..+ .++|+.+++|+.-.
T Consensus 245 k--aPkLvt~e~vk~MkpGsVivDVAiD 270 (371)
T COG0686 245 K--APKLVTREMVKQMKPGSVIVDVAID 270 (371)
T ss_pred C--CceehhHHHHHhcCCCcEEEEEEEc
Confidence 1 12223333 35678888887643
No 178
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.0049 Score=59.98 Aligned_cols=76 Identities=25% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--ccccc---ccc--CCCCccEEEEC
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFEDI---LNF--QPEKGAILANA 435 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~~~l---~~~--~~~~~divIna 435 (519)
.++++++++|.|+ |+.|+.++..|.+.|++|.+++|+.++++++++..+...+ ++.+. ... .....|+||++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 3567899999998 7999999999999999999999999999888877653321 22221 110 12347999998
Q ss_pred CCCC
Q 010050 436 TPLG 439 (519)
Q Consensus 436 t~~g 439 (519)
....
T Consensus 85 ag~~ 88 (245)
T PRK07060 85 AGIA 88 (245)
T ss_pred CCCC
Confidence 8654
No 179
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.77 E-value=0.0047 Score=61.12 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 431 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~di 431 (519)
+++|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++.++++... .++.+ +..+ .....|+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 83 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC 83 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 56789999987 699999999999999999999999999998887764321 11111 1110 1235799
Q ss_pred EEECCCC
Q 010050 432 LANATPL 438 (519)
Q Consensus 432 vInat~~ 438 (519)
+||+...
T Consensus 84 li~~ag~ 90 (263)
T PRK06200 84 FVGNAGI 90 (263)
T ss_pred EEECCCC
Confidence 9998765
No 180
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.76 E-value=0.003 Score=64.69 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=49.6
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
..+.||++.|+|.|.+|+.++..++..|++|..++|+.... ..+. ...++++ ...++|+|+.+.|..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~---~~~~l~e-ll~~sDvv~lh~Plt 207 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEY---ERVSLEE-LLKTSDIISIHAPLN 207 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCc---eeecHHH-HhhcCCEEEEeCCCC
Confidence 35789999999999999999999999999999999974321 1111 2223334 356789998888864
No 181
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.75 E-value=0.003 Score=60.76 Aligned_cols=72 Identities=21% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHhcCCcc--ccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAAR--PFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~-ka~~La~~~~~~~~--~~~~l~~~~~~~~divInat~~ 438 (519)
.+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+.. ..+++++.-...++ .+. .. ...++++||-||..
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~--~~-dl~~~~lVi~at~d 79 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD--AD-ILEGAFLVIAATDD 79 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC--HH-HhCCcEEEEECCCC
Confidence 457899999999999999999999999999999998764 44566554322111 111 01 23567888888764
No 182
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.0042 Score=64.21 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=55.1
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCCC
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPEK 428 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~---~~~----~~~~~---l~~~------~~~~ 428 (519)
+++|+++|.|+ ||+|++++..|.+.|++|+++.|+.++.+++++++. ... .++.+ +..+ ....
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 56899999998 699999999999999999999999999988877652 221 12211 1110 1245
Q ss_pred ccEEEECCCCCC
Q 010050 429 GAILANATPLGM 440 (519)
Q Consensus 429 ~divInat~~g~ 440 (519)
.|++||+...+.
T Consensus 85 iD~lVnnAG~~~ 96 (330)
T PRK06139 85 IDVWVNNVGVGA 96 (330)
T ss_pred CCEEEECCCcCC
Confidence 799999886543
No 183
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.73 E-value=0.0037 Score=65.55 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=80.2
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
+..+.||++.|||.|.+|+.++..|...|++|..+++..... ... ..+.++++ ...++|+|+..+|..-.+
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-----~~~---~~~~~L~e-ll~~sDiI~lh~PLt~~g 181 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-----GDE---GDFRSLDE-LVQEADILTFHTPLFKDG 181 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-----ccc---cccCCHHH-HHhhCCEEEEeCCCCCCc
Confidence 467899999999999999999999999999999999753211 000 12223333 345689988888864321
Q ss_pred CC-CCCCC-----------------------Ccc----cccC---CcEEEEEecC-CC-cCHHHHHHH----HcCCceec
Q 010050 443 NT-DRVPV-----------------------SEE----TLRD---YQLVFDAVYT-PR-KTRLLKDAE----AAGAIIVS 485 (519)
Q Consensus 443 ~~-~~~~l-----------------------~~~----~l~~---~~~v~Di~Y~-P~-~T~ll~~A~----~~G~~~~~ 485 (519)
.. ..-.+ +.+ .|+. ...++|+-.. |. ..+|+.... --+....+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e 261 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLE 261 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHH
Confidence 00 00011 111 1222 2567898765 43 344544221 01333445
Q ss_pred cHHHHHHHHHHHHHHhcCCC
Q 010050 486 GVEMFLRQAIGQFNLFTGKE 505 (519)
Q Consensus 486 Gl~mli~Qa~~qf~lw~g~~ 505 (519)
|......+..+++.-|.|.+
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~ 281 (378)
T PRK15438 262 GKARGTTQVFEAYSKFIGHE 281 (378)
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 56666677777777788855
No 184
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.0027 Score=63.51 Aligned_cols=74 Identities=26% Similarity=0.494 Sum_probs=55.9
Q ss_pred CCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC--Cc----ccc---ccc-------cccCC
Q 010050 364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPF---EDI-------LNFQP 426 (519)
Q Consensus 364 ~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~--~~----~~~---~~l-------~~~~~ 426 (519)
.+++|+.|||.|+| |.||+++..++++|+++.+++.+.+-.++..+++.. +. .++ +++ .+ +.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~-e~ 112 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK-EV 112 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH-hc
Confidence 56789999999998 999999999999999999999998887777766642 11 222 222 12 35
Q ss_pred CCccEEEECCCC
Q 010050 427 EKGAILANATPL 438 (519)
Q Consensus 427 ~~~divInat~~ 438 (519)
.+.|++||.-.+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678999996654
No 185
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.72 E-value=0.0028 Score=65.00 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~-~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
+++|++.|||+|-+|++++..|...|.+|.+.+|.. ++.+++. +.|....+ ..+ ...++|+|+.++|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-~~Gv~~~s---~~e-a~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-EDGFKVGT---VEE-AIPQADLIMNLLPDE 70 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-HCCCEECC---HHH-HHhcCCEEEEeCCcH
Confidence 357899999999999999999999999887766654 3333333 44443222 222 246789999999864
No 186
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.71 E-value=0.001 Score=69.45 Aligned_cols=106 Identities=20% Similarity=0.083 Sum_probs=74.0
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 444 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~-G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~ 444 (519)
...+++|||. |-+|++++.+|++. |++|+.++|..+. ..+..+ ...++|+||-|+|+......
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------------~~~~~~-~v~~aDlVilavPv~~~~~~ 67 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------------SLDPAT-LLQRADVLIFSAPIRHTAAL 67 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------------cCCHHH-HhcCCCEEEEeCCHHHHHHH
Confidence 3578999999 99999999999975 6699999885211 111122 34678999999998653211
Q ss_pred CCCCCCc--ccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHH
Q 010050 445 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 490 (519)
Q Consensus 445 ~~~~l~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~ml 490 (519)
-.. +.. ..++++.+|.|+... ++..++.+.+.++.++.|-.|+
T Consensus 68 l~~-l~~~~~~l~~~~iVtDVgSv--K~~i~~~~~~~~~~fVG~HPMa 112 (370)
T PRK08818 68 IEE-YVALAGGRAAGQLWLDVTSI--KQAPVAAMLASQAEVVGLHPMT 112 (370)
T ss_pred HHH-HhhhhcCCCCCeEEEECCCC--cHHHHHHHHhcCCCEEeeCCCC
Confidence 000 111 126789999999875 5667788888777788887776
No 187
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.71 E-value=0.003 Score=64.69 Aligned_cols=92 Identities=21% Similarity=0.202 Sum_probs=60.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC-C----------ccccccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-A----------ARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~-~----------~~~~~~l~~~~~~~~divInat~~ 438 (519)
++.|+|+|.+|.+++..|.+.|.+|++++|++++++++.+.... . .....+..+ ...++|+||-|+|.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~~ 81 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE-ALADADLILVAVPS 81 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH-HHhCCCEEEEeCCH
Confidence 68999999999999999999999999999999999888765210 0 001112222 23568999999985
Q ss_pred CCCCCCCCCCCCcccccCCcEEEEEe
Q 010050 439 GMHPNTDRVPVSEETLRDYQLVFDAV 464 (519)
Q Consensus 439 g~~~~~~~~~l~~~~l~~~~~v~Di~ 464 (519)
......- ..+ ...+.++.+++++.
T Consensus 82 ~~~~~v~-~~l-~~~~~~~~~vi~~~ 105 (325)
T PRK00094 82 QALREVL-KQL-KPLLPPDAPIVWAT 105 (325)
T ss_pred HHHHHHH-HHH-HhhcCCCCEEEEEe
Confidence 3211000 001 11345677888885
No 188
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.71 E-value=0.0028 Score=65.12 Aligned_cols=138 Identities=18% Similarity=0.237 Sum_probs=85.6
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
.+++||++.|+|.|..|+++++.++..|++|..++|++. .+..++++..+.++++ .++++|+|+...|..-...
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~~l~e----ll~~sDii~l~~Plt~~T~ 215 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYVDLDE----LLAESDIISLHCPLTPETR 215 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceeccHHH----HHHhCCEEEEeCCCChHHh
Confidence 568899999999999999999999988889999999874 2222333333334333 2455777777776532111
Q ss_pred C--CC------------------CCCCcc----cccCC---cEEEEEecC-CC--cCHHHHHHHH--------cCCceec
Q 010050 444 T--DR------------------VPVSEE----TLRDY---QLVFDAVYT-PR--KTRLLKDAEA--------AGAIIVS 485 (519)
Q Consensus 444 ~--~~------------------~~l~~~----~l~~~---~~v~Di~Y~-P~--~T~ll~~A~~--------~G~~~~~ 485 (519)
. +. ..++.+ .|+.+ ...+|+-.+ |. +.+|++.... .++.+..
T Consensus 216 hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~e 295 (324)
T COG1052 216 HLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE 295 (324)
T ss_pred hhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHH
Confidence 0 00 001111 12332 456787765 44 4677665542 2455666
Q ss_pred cHHHHHHHHHHHHHHhc-CCCCC
Q 010050 486 GVEMFLRQAIGQFNLFT-GKEAP 507 (519)
Q Consensus 486 Gl~mli~Qa~~qf~lw~-g~~~~ 507 (519)
.+.-+..+++...+-|. |..++
T Consensus 296 a~~~m~~~~~~nl~~~~~g~~~~ 318 (324)
T COG1052 296 ARKAMAELALENLEAFFDGGVPP 318 (324)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Confidence 77777888888888776 44433
No 189
>PRK06196 oxidoreductase; Provisional
Probab=96.70 E-value=0.0062 Score=62.24 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccccc---cc------CCCCcc
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFEDIL---NF------QPEKGA 430 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~-~~--~~~~~l~---~~------~~~~~d 430 (519)
.++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++.. .. .++.+.+ .+ .....|
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 3567899999988 7999999999999999999999999998887766531 11 1222211 10 124579
Q ss_pred EEEECCCCC
Q 010050 431 ILANATPLG 439 (519)
Q Consensus 431 ivInat~~g 439 (519)
+|||+....
T Consensus 102 ~li~nAg~~ 110 (315)
T PRK06196 102 ILINNAGVM 110 (315)
T ss_pred EEEECCCCC
Confidence 999987653
No 190
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.68 E-value=0.0046 Score=60.29 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=41.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+++++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++...+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 56789999987 789999999999999999999999998888776654
No 191
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.68 E-value=0.0033 Score=66.04 Aligned_cols=134 Identities=23% Similarity=0.228 Sum_probs=78.5
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
+..+.||++.|||.|.+|+.++..|...|++|.++++.....+ .+. .+.++++ ...++|+|+.++|..-.+
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~~~---~~~~l~e-ll~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----GDG---DFVSLER-ILEECDVISLHTPLTKEG 181 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----cCc---cccCHHH-HHhhCCEEEEeCcCCCCc
Confidence 3568899999999999999999999999999999998543211 001 1222222 234577777777753210
Q ss_pred -CCCCCC-----------------------CCcc----cccCC---cEEEEEecC-CC-cCHHHHHHHH-----cCCcee
Q 010050 443 -NTDRVP-----------------------VSEE----TLRDY---QLVFDAVYT-PR-KTRLLKDAEA-----AGAIIV 484 (519)
Q Consensus 443 -~~~~~~-----------------------l~~~----~l~~~---~~v~Di~Y~-P~-~T~ll~~A~~-----~G~~~~ 484 (519)
+...-. ++.+ .+..+ ..++|+-.. |. ..+|+.. .- .+....
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~ 260 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSL 260 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCH
Confidence 000001 1111 12222 467898776 43 2344432 10 123344
Q ss_pred ccHHHHHHHHHHHHHHhcCCCC
Q 010050 485 SGVEMFLRQAIGQFNLFTGKEA 506 (519)
Q Consensus 485 ~Gl~mli~Qa~~qf~lw~g~~~ 506 (519)
.+..-...+..+++.-|.+.+.
T Consensus 261 e~~~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 261 DGKARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 5555667777888888887664
No 192
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.67 E-value=0.0035 Score=62.57 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceEEEEccchhhHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G---~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
.++.|||+|.+|.+++..|.+.| .+|++++|+.++++.+.+.++.... .+..+ ...++|+||-|++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~--~~~~~-~~~~advVil~v~~~ 73 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA--TDNQE-AAQEADVVVLAVKPQ 73 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec--CChHH-HHhcCCEEEEEcCHH
Confidence 46899999999999999999988 5899999999999998887654321 11112 234678888888653
No 193
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.67 E-value=0.0034 Score=60.93 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=59.9
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc----CCc----cccccccccCCCCccEEEECCCCCC
Q 010050 370 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM----GAA----RPFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 370 ~vlvlG-aGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~----~~~----~~~~~l~~~~~~~~divInat~~g~ 440 (519)
++.||| +|.+|.+++..|.+.|.+|++++|+.++++.+++.+. ... ....+..+ ...++|+||-|+|...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e-a~~~aDvVilavp~~~ 80 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE-AAKRADVVILAVPWDH 80 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH-HHhcCCEEEEECCHHH
Confidence 589997 8999999999999999999999999999998876531 100 01111112 3457899999998654
Q ss_pred CCCCCCCCCCcccccCCcEEEEEe
Q 010050 441 HPNTDRVPVSEETLRDYQLVFDAV 464 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~~~v~Di~ 464 (519)
.+..- ..+. ..+. +.+|+|+.
T Consensus 81 ~~~~l-~~l~-~~l~-~~vvI~~~ 101 (219)
T TIGR01915 81 VLKTL-ESLR-DELS-GKLVISPV 101 (219)
T ss_pred HHHHH-HHHH-Hhcc-CCEEEEec
Confidence 32110 0011 1233 36788875
No 194
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.66 E-value=0.0058 Score=62.60 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=59.0
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCC---------ccccccccc-------c--
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA---------ARPFEDILN-------F-- 424 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~---------~~~~~~l~~-------~-- 424 (519)
.++.++.++|.|+ .|+|++++..|+.+|++|++.+|+.+++++.++++... ..++.++.+ +
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 5677899999988 69999999999999999999999999999999888631 112222211 1
Q ss_pred CCCCccEEEECCCCCCCC
Q 010050 425 QPEKGAILANATPLGMHP 442 (519)
Q Consensus 425 ~~~~~divInat~~g~~~ 442 (519)
....-|++||...+...|
T Consensus 111 ~~~~ldvLInNAGV~~~~ 128 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPP 128 (314)
T ss_pred cCCCccEEEeCcccccCC
Confidence 234579999976654433
No 195
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.66 E-value=0.003 Score=62.25 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.6
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456899999999999999999999999 99997764
No 196
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.66 E-value=0.0036 Score=68.81 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=51.2
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
..+.||++.|+|.|.+|+.++..|+..|++|..++|+..... +..++.... ++.+ ...++|+|+.+.|..
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~--~~~~g~~~~---~l~e-ll~~aDiV~l~lP~t 205 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER--AAQLGVELV---SLDE-LLARADFITLHTPLT 205 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCCEEE---cHHH-HHhhCCEEEEccCCC
Confidence 347899999999999999999999999999999999643221 223333322 3333 345689998888864
No 197
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.65 E-value=0.0035 Score=63.55 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=36.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 408 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La 408 (519)
++|.|||+|.+|.+++..|+..|.+|++++|+.++.+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 6799999999999999999999999999999998877644
No 198
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.64 E-value=0.0039 Score=68.40 Aligned_cols=46 Identities=28% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+|+.++|+|+ |++|++++..|.+.|++|+++.|+.++++.+.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l 124 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSV 124 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Confidence 35788999988 89999999999999999999999999988876543
No 199
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.64 E-value=0.0076 Score=54.39 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=54.1
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCC---c-----cccccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA---A-----RPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGa-Ggaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~---~-----~~~~~l~~~~~~~~divInat~~ 438 (519)
+|.|+|+ |..|.++++.|...+. ++.+++++.++++..+.++..- . +...+. + ...++|+||.+...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~-~-~~~~aDivvitag~ 79 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDY-E-ALKDADIVVITAGV 79 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSG-G-GGTTESEEEETTST
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccc-c-ccccccEEEEeccc
Confidence 6899999 9999999999999886 7999999999999888776421 0 111111 2 35779999988876
Q ss_pred CCCCC
Q 010050 439 GMHPN 443 (519)
Q Consensus 439 g~~~~ 443 (519)
...|.
T Consensus 80 ~~~~g 84 (141)
T PF00056_consen 80 PRKPG 84 (141)
T ss_dssp SSSTT
T ss_pred ccccc
Confidence 54443
No 200
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.64 E-value=0.0045 Score=62.61 Aligned_cols=40 Identities=33% Similarity=0.451 Sum_probs=35.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 408 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La 408 (519)
++|.|||+|-+|.+++..|+..|.+|++++|+.++.++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 5799999999999999999999999999999987665543
No 201
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.63 E-value=0.0012 Score=69.34 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=60.0
Q ss_pred CceEEEEc-cchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 368 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 368 ~k~vlvlG-aGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
.+++.|+| .|.+|.+++.+|.+.|.+|++++|+... +..+ ...++|+||-|+|.......-.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~----------------~~~~-~~~~aDlVilavP~~~~~~~~~ 160 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD----------------RAED-ILADAGMVIVSVPIHLTEEVIA 160 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch----------------hHHH-HHhcCCEEEEeCcHHHHHHHHH
Confidence 47899998 8999999999999999999999996320 1111 2346899999999764321100
Q ss_pred CCCCcccccCCcEEEEEecCCCcCHHHHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 477 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~ 477 (519)
.+. . ++++.++.|+... .+..++.+.
T Consensus 161 -~l~-~-l~~~~iv~Dv~Sv--K~~~~~~~~ 186 (374)
T PRK11199 161 -RLP-P-LPEDCILVDLTSV--KNAPLQAML 186 (374)
T ss_pred -HHh-C-CCCCcEEEECCCc--cHHHHHHHH
Confidence 011 1 5678999999654 333344444
No 202
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.62 E-value=0.0053 Score=60.74 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=41.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++.+..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~ 50 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHG 50 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC
Confidence 46789999987 689999999999999999999999999888876544
No 203
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.61 E-value=0.0042 Score=63.95 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=79.3
Q ss_pred CCCCCceEEEEccchhhHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~-~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
..+.||++.|+|.|.+|++++..|+ ..|++|..++|...... ...++....++++ ..+++|+|+.+.|..-..
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~--~~~~~~~~~~l~e----ll~~sDvv~lh~plt~~T 214 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA--EERFNARYCDLDT----LLQESDFVCIILPLTDET 214 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh--HHhcCcEecCHHH----HHHhCCEEEEeCCCChHH
Confidence 3578999999999999999999997 78999999998743211 1233333333333 245678888887753210
Q ss_pred C--CCC------------------CCCCcc----cccCC---cEEEEEecC-CC--cCHHHHHHH-----HcCCceeccH
Q 010050 443 N--TDR------------------VPVSEE----TLRDY---QLVFDAVYT-PR--KTRLLKDAE-----AAGAIIVSGV 487 (519)
Q Consensus 443 ~--~~~------------------~~l~~~----~l~~~---~~v~Di~Y~-P~--~T~ll~~A~-----~~G~~~~~Gl 487 (519)
. .+. ..++.+ .|..+ ...+|+.+. |. +.||++.-. -.|..+....
T Consensus 215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR 294 (323)
T ss_pred hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH
Confidence 0 000 001111 23333 355788765 32 455643211 0144455555
Q ss_pred HHHHHHHHHHHHHhcCC
Q 010050 488 EMFLRQAIGQFNLFTGK 504 (519)
Q Consensus 488 ~mli~Qa~~qf~lw~g~ 504 (519)
.-+..++++++.-|...
T Consensus 295 ~~~~~~~~~ni~~~~~g 311 (323)
T PRK15409 295 YNMAACAVDNLIDALQG 311 (323)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66677778888777643
No 204
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.60 E-value=0.005 Score=61.54 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=32.3
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
.+++++|+|+|+||.|..++.+|+..|+ +|+|++.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3678899999999999999999999998 99987754
No 205
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.60 E-value=0.003 Score=61.75 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=49.8
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC-------------------HHHHHHHHHHhcCC--cccc-----
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMGA--ARPF----- 418 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt-------------------~~ka~~La~~~~~~--~~~~----- 418 (519)
+.+++|+|+|+||.|..++..|+..|+ +++|++.+ ..|++.+++.+... .+.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 557899999999999999999999999 99988432 24677776665321 1111
Q ss_pred ----ccccccCCCCccEEEECCC
Q 010050 419 ----EDILNFQPEKGAILANATP 437 (519)
Q Consensus 419 ----~~l~~~~~~~~divInat~ 437 (519)
+++.+ ...++|+||+|+.
T Consensus 99 ~i~~~~~~~-~~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEE-LIAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHH-HHhCCCEEEEcCC
Confidence 11122 2456899999874
No 206
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.006 Score=60.04 Aligned_cols=74 Identities=34% Similarity=0.363 Sum_probs=54.2
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc------CCCCccEE
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF------QPEKGAIL 432 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~~~---l~~~------~~~~~div 432 (519)
.+++++++|+|+ ||.|++++..|.+.|++|.++.|+.++.+++.++++.... ++.+ +..+ .....|++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 83 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIA 83 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 367899999999 7999999999999999999999999888887776643221 2111 1110 12357999
Q ss_pred EECCCC
Q 010050 433 ANATPL 438 (519)
Q Consensus 433 Inat~~ 438 (519)
|++...
T Consensus 84 i~~ag~ 89 (255)
T PRK06057 84 FNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998754
No 207
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.59 E-value=0.012 Score=63.72 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCceEEEEccchhhHH-HHHHHHhCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN 443 (519)
Q Consensus 366 ~~~k~vlvlGaGgaara-i~~~L~~~G~~v~i~nRt~~k-a~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~ 443 (519)
.++++++|+|.|++|++ ++..|.++|++|++.++.... .++|. +.+..... ..-.+ ...++|+||- |+|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~-~~gi~~~~-~~~~~-~~~~~d~vv~--spgi--- 76 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLL-ELGAIIFI-GHDAE-NIKDADVVVY--SSAI--- 76 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHH-HCCCEEeC-CCCHH-HCCCCCEEEE--CCCC---
Confidence 45789999999999999 699999999999999975432 22232 11211100 00000 1123444442 1111
Q ss_pred CCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHHH
Q 010050 444 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLR 492 (519)
Q Consensus 444 ~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli~ 492 (519)
|...|.+++|+++|+++++..+++-.
T Consensus 77 -----------------------~~~~~~~~~a~~~~i~i~~~~e~~~~ 102 (461)
T PRK00421 77 -----------------------PDDNPELVAARELGIPVVRRAEMLAE 102 (461)
T ss_pred -----------------------CCCCHHHHHHHHCCCcEEeHHHHHHH
Confidence 23467788888888888888888643
No 208
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.0097 Score=64.33 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
+.+++++|+|.|+.|++++..|.+.|++|+++++..
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 557899999999999999999999999999999864
No 209
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.58 E-value=0.0036 Score=61.88 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567899999999999999999999999 99998653
No 210
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.57 E-value=0.0049 Score=62.99 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=37.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 409 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~ 409 (519)
++|.|||+|-+|.+++..|+..|++|++++|+.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 57999999999999999999999999999999988877655
No 211
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.57 E-value=0.0053 Score=67.45 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=51.3
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
..+.||++.|+|.|.+|++++..|+..|++|..++|..... .+.+++.... +++.+ ...++|+|+.+.|..
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvV~l~lPlt 204 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPE--RAEQLGVELV--DDLDE-LLARADFITVHTPLT 204 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEEc--CCHHH-HHhhCCEEEEccCCC
Confidence 35789999999999999999999999999999999963321 1233443221 23333 345689999888864
No 212
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0056 Score=59.78 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=55.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHH-HHHHhcCCc-----cccccccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS-LASDVMGAA-----RPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~-La~~~~~~~-----~~~~~l~~~~~~~~divInat~~ 438 (519)
++++|+|+|-.|+.+|..|.+.|.+|.++.++.+++++ +++++.... .+.+-|.+....++|++|-+|.-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 46899999999999999999999999999999999888 554555432 23334445457889999988864
No 213
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=96.55 E-value=0.0056 Score=57.46 Aligned_cols=73 Identities=29% Similarity=0.453 Sum_probs=56.4
Q ss_pred CCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC--Ccccc--------------ccccccCCCC
Q 010050 366 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AARPF--------------EDILNFQPEK 428 (519)
Q Consensus 366 ~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~--~~~~~--------------~~l~~~~~~~ 428 (519)
+..|.++|.|+| |.|||++..|++.|++|.+.+++.+.|++.|..++. .+..| ++..+ ....
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k-~~g~ 90 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK-SLGT 90 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH-hcCC
Confidence 445778899887 999999999999999999999999999999999875 22222 11111 3456
Q ss_pred ccEEEECCCCC
Q 010050 429 GAILANATPLG 439 (519)
Q Consensus 429 ~divInat~~g 439 (519)
.+++|||..+.
T Consensus 91 psvlVncAGIt 101 (256)
T KOG1200|consen 91 PSVLVNCAGIT 101 (256)
T ss_pred CcEEEEcCccc
Confidence 79999988653
No 214
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.54 E-value=0.0092 Score=61.41 Aligned_cols=119 Identities=24% Similarity=0.282 Sum_probs=77.5
Q ss_pred ceEEEEccchhh-HHHHHHHHhCC--C-eEEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCC
Q 010050 369 RMFVLAGAGGAG-RALAFGAKSRG--A-RVVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 369 k~vlvlGaGgaa-rai~~~L~~~G--~-~v~i~nRt~~ka~~La~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
.++.|||+|+.+ +..+.++...+ + -+.+++|+.+++++++++++.. +.+++++-+ ..+.|+|+.|||...+.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLA--DPDIDAVYIATPNALHA 81 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEcCCChhhH
Confidence 579999999655 56777888775 4 6889999999999999999875 234444322 24479999999976653
Q ss_pred CCCCCCCCcccccCCc-EEEEEecCCCc------CHHHHHHHHcCCceeccHHHHHHHHHHH
Q 010050 443 NTDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFLRQAIGQ 497 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~-~v~Di~Y~P~~------T~ll~~A~~~G~~~~~Gl~mli~Qa~~q 497 (519)
. +....|..+. ++++ +|.- ..+++.|+++|....-|...--..+...
T Consensus 82 e-----~~~~AL~aGkhVl~E---KPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~ 135 (342)
T COG0673 82 E-----LALAALEAGKHVLCE---KPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQA 135 (342)
T ss_pred H-----HHHHHHhcCCEEEEc---CCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHH
Confidence 2 2233444433 3322 4431 2466667777777766666554444433
No 215
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.53 E-value=0.0042 Score=60.85 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+++++|+|+|.||.|..++.+|+..|+ ++++++.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999999 99998754
No 216
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.51 E-value=0.0059 Score=61.80 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=35.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 406 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~ 406 (519)
++|.|||+|-||+.++..|+..|++|++++++++..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 47999999999999999999999999999999998766
No 217
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.49 E-value=0.0091 Score=59.72 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCCceEEEEccc---hhhHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHhcCC-c--ccccc---cccc------CCC
Q 010050 366 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFER---AKSLASDVMGA-A--RPFED---ILNF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGaG---gaarai~~~L~~~G~~v~i~nRt~~k---a~~La~~~~~~-~--~~~~~---l~~~------~~~ 427 (519)
+++|.++|.|++ |+|++++.+|++.|++|+++.|+.+. .++++++++.. . .++.+ +..+ ...
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 568999999997 89999999999999999999998643 34444444321 1 12211 1110 124
Q ss_pred CccEEEECCCCC
Q 010050 428 KGAILANATPLG 439 (519)
Q Consensus 428 ~~divInat~~g 439 (519)
..|++||+....
T Consensus 85 ~iD~lVnnAG~~ 96 (271)
T PRK06505 85 KLDFVVHAIGFS 96 (271)
T ss_pred CCCEEEECCccC
Confidence 579999987543
No 218
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.48 E-value=0.012 Score=62.85 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
+.+++|+|+|-|..|++++..|.++|++|++++..+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 4489999999999999999999999999999996543
No 219
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.0068 Score=60.25 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=42.7
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.++++|.++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI 52 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3477899999988 59999999999999999999999999988887665
No 220
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.46 E-value=0.0052 Score=61.28 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=48.9
Q ss_pred eEEEEccchhhHHHHHHHHhCCC----eEEEE-eCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA----RVVIF-DIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~----~v~i~-nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
++.+||.|.||.+++..|.+.|+ +|+++ ||+.++++.+.+ ++... ..+..+ ...++|+||-|++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~--~~~~~e-~~~~aDvVil~v~~ 71 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKT--AASNTE-VVKSSDVIILAVKP 71 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEE--eCChHH-HHhcCCEEEEEECc
Confidence 58899999999999999999986 89999 999999887754 44322 112222 23568999988864
No 221
>PRK07680 late competence protein ComER; Validated
Probab=96.46 E-value=0.0044 Score=62.17 Aligned_cols=116 Identities=13% Similarity=0.029 Sum_probs=70.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHh-cCCccccccccccCCCCccEEEECCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDV-MGAARPFEDILNFQPEKGAILANATPLGMHPNT 444 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~----~v~i~nRt~~ka~~La~~~-~~~~~~~~~l~~~~~~~~divInat~~g~~~~~ 444 (519)
++.|||+|.+|.+++..|.+.|. +|++++|+.++++.+++.+ +... ..+..+ ...++|+||-|++.......
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~--~~~~~~-~~~~aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHV--AKTIEE-VISQSDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEE--ECCHHH-HHHhCCEEEEecCHHHHHHH
Confidence 58999999999999999999883 7999999999999988765 3221 112222 23568999999874321110
Q ss_pred CCCCCCcccccCCcEEEEEecCCCcCHHHHHHHH-cCCceeccHHHHH
Q 010050 445 DRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA-AGAIIVSGVEMFL 491 (519)
Q Consensus 445 ~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~-~G~~~~~Gl~mli 491 (519)
- ..+ ...+.++.+++++. ++....-++.... ...+++++...-.
T Consensus 79 l-~~l-~~~l~~~~~iis~~-ag~~~~~L~~~~~~~~~r~~p~~~~~~ 123 (273)
T PRK07680 79 L-QKL-APHLTDEHCLVSIT-SPISVEQLETLVPCQVARIIPSITNRA 123 (273)
T ss_pred H-HHH-HhhcCCCCEEEEEC-CCCCHHHHHHHcCCCEEEECCChHHHH
Confidence 0 001 01345667888887 3333322332211 2335666644333
No 222
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.44 E-value=0.0079 Score=61.49 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=35.3
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
++|.|||+|-+|.+++..|++.|++|++++|++++.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~ 41 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAA 41 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence 469999999999999999999999999999998876653
No 223
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.43 E-value=0.013 Score=62.50 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=65.4
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC----------------Ccccc-ccccccCCCCccEE
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----------------AARPF-EDILNFQPEKGAIL 432 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~----------------~~~~~-~~l~~~~~~~~div 432 (519)
+|.|||.|-+|.+++..|++.|++|++++|+.++.+.+.+.... ..... .+..+ ...++|+|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~-~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYED-AIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHH-HHhhCCEE
Confidence 58999999999999999999999999999999999887642100 00011 11122 24578999
Q ss_pred EECCCCCCCCCCC--CCCCC---c---ccccCCcEEEEEecCCCcC
Q 010050 433 ANATPLGMHPNTD--RVPVS---E---ETLRDYQLVFDAVYTPRKT 470 (519)
Q Consensus 433 Inat~~g~~~~~~--~~~l~---~---~~l~~~~~v~Di~Y~P~~T 470 (519)
|-|+|.....+.. ...+. . ..++++.+++|....|..|
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt 126 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGT 126 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCc
Confidence 9998865432100 00011 1 1246778899988665554
No 224
>PRK08223 hypothetical protein; Validated
Probab=96.42 E-value=0.0054 Score=61.74 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 567899999999999999999999999 99987754
No 225
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.41 E-value=0.009 Score=60.52 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=49.3
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc---------cccccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA---------RPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~---------~~~~~l~~~~~~~~divInat~~ 438 (519)
++.|+|+|.+|..++..|.+.|.+|+++.|+.++.+.+.+. +... ....+..+ ...+|+||-||+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH--cCCCCEEEEeccc
Confidence 58999999999999999999999999999988887777653 2211 01112222 2568999999875
No 226
>PLN02858 fructose-bisphosphate aldolase
Probab=96.40 E-value=0.0045 Score=75.03 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=72.5
Q ss_pred CceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 447 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~ 447 (519)
.+++-+||.|-||..++..|.+.|++|++|||++++++++++. |... .+...+ ...++|+||.+.|-+-. ....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~-Ga~~--~~s~~e-~a~~advVi~~l~~~~~--v~~V 77 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCEL-GGHR--CDSPAE-AAKDAAALVVVLSHPDQ--VDDV 77 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEEcCChHH--HHHH
Confidence 4679999999999999999999999999999999999999865 3321 112222 23568999987764321 1111
Q ss_pred CCCc----ccccCCcEEEEEecC-CCcC-HHHHHHHHcC
Q 010050 448 PVSE----ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAG 480 (519)
Q Consensus 448 ~l~~----~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G 480 (519)
.+.. ..+.++.+++|+... |..+ .+.+.++++|
T Consensus 78 ~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 78 FFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred HhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 1111 124578899999876 4444 3445556667
No 227
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0062 Score=62.65 Aligned_cols=71 Identities=27% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
+..+.||++.|||.|..|+.++..|+..|++|..++|...+...-. .+ ....+++++ .+.++|+|+..+|.
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--~~--~~~~~~Ld~-lL~~sDiv~lh~Pl 207 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--DG--VVGVDSLDE-LLAEADILTLHLPL 207 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--cc--ceecccHHH-HHhhCCEEEEcCCC
Confidence 3467799999999999999999999999999999999444321111 11 112233333 34567777777765
No 228
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.0054 Score=61.52 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=55.7
Q ss_pred CCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc----CC-c----cccccccc---c------
Q 010050 364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM----GA-A----RPFEDILN---F------ 424 (519)
Q Consensus 364 ~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~----~~-~----~~~~~l~~---~------ 424 (519)
..+.||.|+|-||- |.|+++|+.|++.|++++++.|..++.+.+++++. .+ . .++.+.++ +
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 35779999999995 99999999999999998888888888777766552 12 1 12222111 0
Q ss_pred CCCCccEEEECCCCCC
Q 010050 425 QPEKGAILANATPLGM 440 (519)
Q Consensus 425 ~~~~~divInat~~g~ 440 (519)
.....|++||.-..+.
T Consensus 88 ~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL 103 (282)
T ss_pred hcCCCCEEEecCcccc
Confidence 3467899999776554
No 229
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.40 E-value=0.0075 Score=61.98 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.4
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
++|.|||+|-||+.++..++..|++|++++++++..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 689999999999999999999999999999998866554
No 230
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.0076 Score=58.69 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=41.5
Q ss_pred CCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|.++|.|++ |.|++++..|.+.|++|.+++|+.++.+++.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 568999999986 8999999999999999999999999988887655
No 231
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=96.38 E-value=0.0063 Score=61.15 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=41.1
Q ss_pred CceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 368 GRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 368 ~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
|+=++|.||+ |.||+.+..|+++|.+|++++||++|.+++++++.
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~ 94 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIE 94 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4568899996 99999999999999999999999999999988874
No 232
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.36 E-value=0.0068 Score=62.28 Aligned_cols=63 Identities=27% Similarity=0.251 Sum_probs=46.3
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
.+.||++.|+|.|.+|++++..|+..|++|..++|.... . .....+ +++ ..+++|+|+.+.|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~------~~~~~~---l~e-ll~~sDiv~l~lPl 207 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A------RPDRLP---LDE-LLPQVDALTLHCPL 207 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c------cccccC---HHH-HHHhCCEEEECCCC
Confidence 578999999999999999999999999999999986321 0 011122 333 24567888877775
No 233
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.0079 Score=61.51 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=42.6
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.++++|+++|.|+ ||+|++++..|.+.|++|++++|+.+++++..+++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4578999999987 59999999999999999999999999888876655
No 234
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0019 Score=66.33 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=86.4
Q ss_pred CceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCcccccc------ccccCCCCccEEEECCCCCC
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFED------ILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~~~~------l~~~~~~~~divInat~~g~ 440 (519)
+++||++|+|-.++.++-.|++.+- +|+|..|+...||++++..+.++++++- |.. ....-|+++.-+|...
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~-~v~~~D~viSLlP~t~ 80 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRK-EVKPLDLVISLLPYTF 80 (445)
T ss_pred CcceEEecCccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHh-hhcccceeeeeccchh
Confidence 4789999999999999999998876 9999999999999999988766654431 222 3566799999888766
Q ss_pred CCCCCCCCCCcccccCCcEEEEEecC-CCcCHHHHHHHHcCCc------eeccHHHHH-----------HHHHHHHHHhc
Q 010050 441 HPNTDRVPVSEETLRDYQLVFDAVYT-PRKTRLLKDAEAAGAI------IVSGVEMFL-----------RQAIGQFNLFT 502 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~~~v~Di~Y~-P~~T~ll~~A~~~G~~------~~~Gl~mli-----------~Qa~~qf~lw~ 502 (519)
+|. +.+..+....-+.--.|. |.--.|-+.+...|.. ..+|++-+. .|=+.+|.-++
T Consensus 81 h~l-----VaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~vh~hgg~i~sf~syc 155 (445)
T KOG0172|consen 81 HPL-----VAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLVHEHGGKIKSFKSYC 155 (445)
T ss_pred hHH-----HHHHHHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhhhhccchHHHhhcceeeehhhhc
Confidence 553 222222222222333454 2222333334445544 456666442 24466777777
Q ss_pred CC-CCCH
Q 010050 503 GK-EAPK 508 (519)
Q Consensus 503 g~-~~~~ 508 (519)
|- ++|.
T Consensus 156 Gglpape 162 (445)
T KOG0172|consen 156 GGLPAPE 162 (445)
T ss_pred CCccChh
Confidence 54 4443
No 235
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.34 E-value=0.0042 Score=63.49 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=32.3
Q ss_pred CceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
++++.|||+|-+|++++..|...|.+|+++||+..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56899999999999999999999999999999853
No 236
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.34 E-value=0.0086 Score=58.86 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=42.4
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
++++|+++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++.+.+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 477899999987 799999999999999999999999988887766653
No 237
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.34 E-value=0.0066 Score=62.28 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~ 438 (519)
..+.||++.|+|.|..|+.++..|+..|++|..++|+... ..... +.++++ ...++|+|+.+.|.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~------~~~~~---~~~l~e-ll~~sDiv~l~~Pl 207 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS------VCREG---YTPFEE-VLKQADIVTLHCPL 207 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc------ccccc---cCCHHH-HHHhCCEEEEcCCC
Confidence 3578999999999999999999999999999999886421 11111 222333 24567888877775
No 238
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.33 E-value=0.0079 Score=65.66 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=36.8
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 408 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La 408 (519)
++|.|||+|-||.+++..|...|++|++++|++++.+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~ 44 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIG 44 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence 4799999999999999999999999999999999887654
No 239
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.0086 Score=58.85 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=42.8
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++++++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI 53 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 467899999998 69999999999999999999999999998888776
No 240
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.0097 Score=60.29 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=35.7
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
++|.|||+|-||.+++..|+..|++|++++|++++.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 579999999999999999999999999999999887653
No 241
>PLN02858 fructose-bisphosphate aldolase
Probab=96.31 E-value=0.0089 Score=72.54 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=72.4
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP 448 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~ 448 (519)
+++.+||.|-||.+++..|...|++|+++||+.++++.+++.......+.. + ...++|+||-+.|-... .....
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~---e-~~~~aDvVi~~V~~~~~--v~~Vl 398 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPA---E-VAKDVDVLVIMVANEVQ--AENVL 398 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHH---H-HHhcCCEEEEecCChHH--HHHHH
Confidence 789999999999999999999999999999999999988765221111222 2 24568999988874210 00000
Q ss_pred CC-c---ccccCCcEEEEEecC-CCcC-HHHHHHHH--cCCc
Q 010050 449 VS-E---ETLRDYQLVFDAVYT-PRKT-RLLKDAEA--AGAI 482 (519)
Q Consensus 449 l~-~---~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~--~G~~ 482 (519)
+. . ..+.++.+++|+... |..+ .+.+.+++ +|+.
T Consensus 399 ~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~ 440 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK 440 (1378)
T ss_pred hchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE
Confidence 11 1 224678899999876 5444 34455555 5654
No 242
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.31 E-value=0.015 Score=58.37 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHhcCC-c--ccccccc---cc------CCC
Q 010050 366 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFEDIL---NF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt~---~ka~~La~~~~~~-~--~~~~~l~---~~------~~~ 427 (519)
+++|.++|.|+ +|.|++++..|.+.|++|+++.|+. +++++++++++.. . .++.+.+ .+ ...
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999998 4999999999999999999999985 4556666655432 1 1221111 10 124
Q ss_pred CccEEEECCCC
Q 010050 428 KGAILANATPL 438 (519)
Q Consensus 428 ~~divInat~~ 438 (519)
..|++||+...
T Consensus 83 ~iDilVnnAG~ 93 (274)
T PRK08415 83 KIDFIVHSVAF 93 (274)
T ss_pred CCCEEEECCcc
Confidence 57999998754
No 243
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.26 E-value=0.015 Score=57.92 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=48.5
Q ss_pred CCCceEEEEccc---hhhHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 010050 366 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFED---ILNF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGaG---gaarai~~~L~~~G~~v~i~nRt~---~ka~~La~~~~~~-~--~~~~~---l~~~------~~~ 427 (519)
+++|.++|.|++ |.|++++..|.+.|++|.+..|+. +.++++..+.+.. . .++.+ +..+ ...
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 568999999986 899999999999999999998873 3344444333211 1 12211 1110 124
Q ss_pred CccEEEECCCCC
Q 010050 428 KGAILANATPLG 439 (519)
Q Consensus 428 ~~divInat~~g 439 (519)
..|++||+...+
T Consensus 84 ~iD~linnAg~~ 95 (262)
T PRK07984 84 KFDGFVHSIGFA 95 (262)
T ss_pred CCCEEEECCccC
Confidence 579999987643
No 244
>PLN02306 hydroxypyruvate reductase
Probab=96.25 E-value=0.0096 Score=62.76 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=50.7
Q ss_pred CCCCCceEEEEccchhhHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHHHhcC----------CccccccccccCCCCccE
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERA-KSLASDVMG----------AARPFEDILNFQPEKGAI 431 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~-~~G~~v~i~nRt~~ka-~~La~~~~~----------~~~~~~~l~~~~~~~~di 431 (519)
..+.||++.|+|.|.+|++++..|. ..|++|..++|+.... +.....++. ......++++ ...++|+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~e-ll~~sDi 239 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEE-VLREADV 239 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHH-HHhhCCE
Confidence 3578999999999999999999985 7899999999986421 211122221 0001123444 3567899
Q ss_pred EEECCCCC
Q 010050 432 LANATPLG 439 (519)
Q Consensus 432 vInat~~g 439 (519)
|+.++|..
T Consensus 240 V~lh~Plt 247 (386)
T PLN02306 240 ISLHPVLD 247 (386)
T ss_pred EEEeCCCC
Confidence 99988863
No 245
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.23 E-value=0.02 Score=56.73 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=40.0
Q ss_pred CCCCCceEEEEccc---hhhHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHhc
Q 010050 364 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVM 412 (519)
Q Consensus 364 ~~~~~k~vlvlGaG---gaarai~~~L~~~G~~v~i~nRt~~---ka~~La~~~~ 412 (519)
..+++|.++|.|++ |.|++++..|++.|++|.++.|+.+ +.++++++++
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~ 60 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD 60 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc
Confidence 45788999999975 8999999999999999999999854 3456666554
No 246
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.23 E-value=0.029 Score=60.66 Aligned_cols=98 Identities=22% Similarity=0.269 Sum_probs=60.9
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
+++++++|+|.||.|++++..|.++|++|+++++.......|. ..|........ + ...++|+||-+..+ .|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~-~~g~~~~~~~~--~-~~~~~d~vv~sp~i--~~~-- 78 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAA-AAGITTADLRT--A-DWSGFAALVLSPGV--PLT-- 78 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHH-hcCccccCCCh--h-HHcCCCEEEECCCC--Ccc--
Confidence 5688999999999999999999999999999998755433332 22332111110 0 12346777643222 111
Q ss_pred CCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHHHHH
Q 010050 446 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 491 (519)
Q Consensus 446 ~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~mli 491 (519)
+|..-+.+..|+++|++++..++.+.
T Consensus 79 --------------------~~~~~~~v~~a~~~gi~i~~~~~~~~ 104 (460)
T PRK01390 79 --------------------HPKPHWVVDLARAAGVEVIGDIELFC 104 (460)
T ss_pred --------------------CCcccHHHHHHHHcCCcEEeHHHHHH
Confidence 01111467777888888877776543
No 247
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.23 E-value=0.025 Score=60.89 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=33.1
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
+.+++++|+|.|++|++++..|.+.|++|++++++..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4578999999999999999999999999999987654
No 248
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.21 E-value=0.015 Score=58.11 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CC
Q 010050 365 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QP 426 (519)
Q Consensus 365 ~~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt~---~ka~~La~~~~~~~---~~~~~---l~~~------~~ 426 (519)
-+++|.++|.|+ +|.|++++..|.+.|++|++..|+. +++++++++++... .++.+ +..+ ..
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence 356899999998 5999999999999999999988873 56667776655211 12111 1110 12
Q ss_pred CCccEEEECCCC
Q 010050 427 EKGAILANATPL 438 (519)
Q Consensus 427 ~~~divInat~~ 438 (519)
...|++||+...
T Consensus 87 g~iD~lv~nAG~ 98 (272)
T PRK08159 87 GKLDFVVHAIGF 98 (272)
T ss_pred CCCcEEEECCcc
Confidence 457999998754
No 249
>PRK05717 oxidoreductase; Validated
Probab=96.20 E-value=0.012 Score=57.79 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cc----cc--CCCC
Q 010050 363 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---IL----NF--QPEK 428 (519)
Q Consensus 363 ~~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~----~~--~~~~ 428 (519)
+..+++|+++|.|+ |+.|++++..|.+.|++|.+++|+.++++++++.++... .++.+ +. +. ....
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35678999999987 799999999999999999999999988888877664321 12211 11 10 1234
Q ss_pred ccEEEECCCCC
Q 010050 429 GAILANATPLG 439 (519)
Q Consensus 429 ~divInat~~g 439 (519)
.|++||+....
T Consensus 85 id~li~~ag~~ 95 (255)
T PRK05717 85 LDALVCNAAIA 95 (255)
T ss_pred CCEEEECCCcc
Confidence 79999987653
No 250
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.20 E-value=0.1 Score=49.62 Aligned_cols=130 Identities=17% Similarity=0.162 Sum_probs=83.5
Q ss_pred eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 010050 11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (519)
Q Consensus 11 ~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~-~~~pii~T~R~~~eGG~~~~~~~~~~~ 89 (519)
+.||+.|-..+.++...-++..... ++.+|+-..+..... .+.++.+++. .+.|++...-.. +.+ . .
T Consensus 1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~-~~~-------~--~ 68 (202)
T cd04726 1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTA-DAG-------A--L 68 (202)
T ss_pred CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEec-ccc-------H--H
Confidence 4799999999999998877776555 999999666654332 2467777765 578988764432 111 1 2
Q ss_pred HHHHHHHhCCcEEEEeccccchHHHHhH-hccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 010050 90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (519)
Q Consensus 90 ll~~~~~~~~~~vDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Ki 159 (519)
.++.+.+.|++++=+-.....+...++. ..++.+.++++.-+.. .|| ++.. + +...|+|++|+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence 3467788999998776554332233333 2344678888765542 122 2332 2 55679999998
No 251
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.20 E-value=0.013 Score=60.23 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=53.0
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---cccccCCCCccEEEECCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DILNFQPEKGAILANATP 437 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~-~~~~---~l~~~~~~~~divInat~ 437 (519)
.|++++|+|+||.|..++..++.+|++|+.+.|+.+|. ++|+++|... +... ..+. ..+.+|++|++.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd~~i~~~~~~~~~~-~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGADHVINSSDSDALEA-VKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCcEEEEcCCchhhHH-hHhhCcEEEECCC
Confidence 48999999999999999998888999999999999985 6777887643 2221 1111 1123899999987
No 252
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.008 Score=59.32 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=48.7
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHhcCCcc--ccc---cccccCCCCccEEEECC
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAAR--PFE---DILNFQPEKGAILANAT 436 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~-ka~~La~~~~~~~~--~~~---~l~~~~~~~~divInat 436 (519)
..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.. +.+... .-....+ ++. ++.+ .....|++||+.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~-~~~~iDilVnnA 87 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND-ESPNEWIKWECGKEESLDK-QLASLDVLILNH 87 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc-cCCCeEEEeeCCCHHHHHH-hcCCCCEEEECC
Confidence 4567899999988 69999999999999999999999863 222111 1111111 111 2222 245689999987
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
..+
T Consensus 88 G~~ 90 (245)
T PRK12367 88 GIN 90 (245)
T ss_pred ccC
Confidence 653
No 253
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.17 E-value=0.012 Score=58.35 Aligned_cols=47 Identities=34% Similarity=0.494 Sum_probs=42.8
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.++++++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 51 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG 51 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence 56889999987 799999999999999999999999998888888765
No 254
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.16 E-value=0.015 Score=59.81 Aligned_cols=74 Identities=24% Similarity=0.316 Sum_probs=55.8
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~-------~~~~~l~~~~~~~~divInat~ 437 (519)
.++++.|+|+|.+|.++++.|...|. ++.+++++.++++..+.++.... +...+.+ ..+++|+||.+..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~--~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS--DCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH--HhCCCCEEEEecC
Confidence 45799999999999999999999987 79999999999888887764211 1111222 3578999998776
Q ss_pred CCCCC
Q 010050 438 LGMHP 442 (519)
Q Consensus 438 ~g~~~ 442 (519)
..-.|
T Consensus 83 ~~~k~ 87 (315)
T PRK00066 83 APQKP 87 (315)
T ss_pred CCCCC
Confidence 64444
No 255
>PRK12742 oxidoreductase; Provisional
Probab=96.15 E-value=0.018 Score=55.64 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHhcCCcc--cccc---cccc--CCCCccEEEECC
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAAR--PFED---ILNF--QPEKGAILANAT 436 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nR-t~~ka~~La~~~~~~~~--~~~~---l~~~--~~~~~divInat 436 (519)
+++|+++|.|+ ||.|++++..|.+.|++|.+..| +.++.++++.+++.... ++.+ +.++ .....|++||+.
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a 83 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA 83 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence 56899999997 79999999999999998877654 67788888777654321 2211 1110 123479999987
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
...
T Consensus 84 g~~ 86 (237)
T PRK12742 84 GIA 86 (237)
T ss_pred CCC
Confidence 543
No 256
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.013 Score=57.84 Aligned_cols=48 Identities=33% Similarity=0.476 Sum_probs=42.7
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++++++.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 367899999987 699999999999999999999999999888887763
No 257
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.13 E-value=0.011 Score=62.82 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC--Ccc--cccc---ccccCCCCccEEEECC
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AAR--PFED---ILNFQPEKGAILANAT 436 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~--~~~--~~~~---l~~~~~~~~divInat 436 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.++....... ..+ ++.+ +.+ ...+.|++||+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~-~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAE-LLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHH-HhCCCCEEEECC
Confidence 456899999988 7999999999999999999999988765443322111 111 1111 222 235689999876
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
..+
T Consensus 254 Gi~ 256 (406)
T PRK07424 254 GIN 256 (406)
T ss_pred CcC
Confidence 543
No 258
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.13 E-value=0.013 Score=58.46 Aligned_cols=48 Identities=31% Similarity=0.524 Sum_probs=43.1
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 54 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEI 54 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4577899999987 79999999999999999999999999888887765
No 259
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.12 E-value=0.017 Score=55.74 Aligned_cols=150 Identities=14% Similarity=0.052 Sum_probs=84.9
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC-
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH- 441 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~-~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~- 441 (519)
.+++||+|||+|+|..|..=+..|.+.|++|+|++.+. +.-+.++...+..++. .....-....+++||-||+-...
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~~~~lviaAt~d~~ln 86 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLDDAFLVIAATDDEELN 86 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhcCceEEEEeCCCHHHH
Confidence 56889999999999999999999999999999999987 5556666554432222 11111012347888887753110
Q ss_pred ------------C-C-CCC---CC-CCcccccCCcEEEEEecCCCcCHHHHHHHHcCCc--eeccHHHHHHHHHHHHHHh
Q 010050 442 ------------P-N-TDR---VP-VSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI--IVSGVEMFLRQAIGQFNLF 501 (519)
Q Consensus 442 ------------~-~-~~~---~~-l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~--~~~Gl~mli~Qa~~qf~lw 501 (519)
+ + .|. +. +-++.+..+.+.+=+..+- ..|.+...-...+. .-+.+.+... ...+++-+
T Consensus 87 ~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G-~sP~la~~ir~~Ie~~l~~~~~~~~~-~~~~~R~~ 164 (210)
T COG1648 87 ERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGG-KSPVLARLLREKIEALLPPSLGEVAE-LAARLRER 164 (210)
T ss_pred HHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCC-CChHHHHHHHHHHHHHcCCchHHHHH-HHHHHHHH
Confidence 0 0 000 00 1234455667777776642 23333333332222 2344444444 44555555
Q ss_pred cCCCCCHHHHHHHHH
Q 010050 502 TGKEAPKEFMREIVL 516 (519)
Q Consensus 502 ~g~~~~~~~~~~~~~ 516 (519)
-....+....|..++
T Consensus 165 v~~~~~~~~~Rr~~~ 179 (210)
T COG1648 165 VKGSLPKGKERRRFW 179 (210)
T ss_pred HHhccccHHHHHHHH
Confidence 555666555554444
No 260
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.11 E-value=0.0084 Score=51.85 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=71.0
Q ss_pred eEEEEccchhhHHHHHHHHhCC--Ce-EEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD 445 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G--~~-v~i~nRt~~ka~~La~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~~~~~ 445 (519)
++.|||+|..|+.-..++...+ .+ +.|+++++++++++++.++... .+++++-+ ..+.|+|+.+||...+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~I~tp~~~h~~-- 77 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA--DEDVDAVIIATPPSSHAE-- 77 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH--HTTESEEEEESSGGGHHH--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH--hhcCCEEEEecCCcchHH--
Confidence 6899999999999998888773 45 4599999999999999988652 23333322 236899999998754321
Q ss_pred CCCCCcccccCC-cEEEEEecCCCc------CHHHHHHHHcCCcee
Q 010050 446 RVPVSEETLRDY-QLVFDAVYTPRK------TRLLKDAEAAGAIIV 484 (519)
Q Consensus 446 ~~~l~~~~l~~~-~~v~Di~Y~P~~------T~ll~~A~~~G~~~~ 484 (519)
+-...++.+ .+++| +|.- -.+++.+++.|..+.
T Consensus 78 ---~~~~~l~~g~~v~~E---KP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 78 ---IAKKALEAGKHVLVE---KPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp ---HHHHHHHTTSEEEEE---SSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred ---HHHHHHHcCCEEEEE---cCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 222344443 34444 4442 356677777787654
No 261
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.11 E-value=0.013 Score=57.53 Aligned_cols=47 Identities=36% Similarity=0.550 Sum_probs=42.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l 53 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKL 53 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHH
Confidence 467899999987 69999999999999999999999999888887765
No 262
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.10 E-value=0.0043 Score=57.71 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=48.5
Q ss_pred EEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---ccccCCCCccEEEECCCCC
Q 010050 371 FVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNFQPEKGAILANATPLG 439 (519)
Q Consensus 371 vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~--~~~~~---l~~~~~~~~divInat~~g 439 (519)
|+|+|| |.+|+.++..|.+.|++|+++.|++++++. ..+.+. .++.+ +.. .+.++|.||++.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~-al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKA-ALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHH-HHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhh-hhhhcchhhhhhhhh
Confidence 689997 999999999999999999999999998877 222221 12322 222 346789999988643
No 263
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.019 Score=56.46 Aligned_cols=48 Identities=31% Similarity=0.459 Sum_probs=42.3
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
.+++++++|+|+ |+.|+.++..|.+.|++|+++.|+.+..+++.+.++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~ 56 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP 56 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 367899999988 789999999999999999999999988888877653
No 264
>PRK06182 short chain dehydrogenase; Validated
Probab=96.09 E-value=0.0096 Score=59.27 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=50.4
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc------CCCCccEEEEC
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF------QPEKGAILANA 435 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~~~---l~~~------~~~~~divIna 435 (519)
+++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++... +...+ ++.+ +... .....|++||+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL-GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 578999997 7999999999999999999999999888776542 22211 2211 1110 12357999998
Q ss_pred CCCC
Q 010050 436 TPLG 439 (519)
Q Consensus 436 t~~g 439 (519)
...+
T Consensus 82 ag~~ 85 (273)
T PRK06182 82 AGYG 85 (273)
T ss_pred CCcC
Confidence 8654
No 265
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.08 E-value=0.011 Score=60.66 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=41.3
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.|+.++|.|| ||.|++++..|++.|++|.+++|+.++.+++++++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l 97 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI 97 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence 5789999998 69999999999999999999999999998887765
No 266
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.036 Score=60.12 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nR 399 (519)
+.+|+++|+|.|-.|++++..|.+.|++|++++-
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcC
Confidence 5689999999999999999999999999999884
No 267
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.017 Score=56.71 Aligned_cols=48 Identities=31% Similarity=0.477 Sum_probs=43.2
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.++++++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++..++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4578899999987 79999999999999999999999999988887765
No 268
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.015 Score=57.17 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=41.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++++++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 50 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEI 50 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56789999987 69999999999999999999999999988887765
No 269
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.05 E-value=0.073 Score=52.59 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEE--------eCCHHHHHHH---
Q 010050 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF--------DIDFERAKSL--- 407 (519)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~--------nRt~~ka~~L--- 407 (519)
+.|...+++..++..+ ...++++++.|-|.|.+|+.++..|.+.|++|..+ |.+.-..++|
T Consensus 11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~ 82 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRI 82 (244)
T ss_dssp HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHH
Confidence 5778888877665322 24588999999999999999999999999865443 5543344444
Q ss_pred HHHhcCCccccc--------ccc---ccCCCCccEEEECCCCCCCCCCCCCCCCcc----ccc-CCcEEEEEecCCCcCH
Q 010050 408 ASDVMGAARPFE--------DIL---NFQPEKGAILANATPLGMHPNTDRVPVSEE----TLR-DYQLVFDAVYTPRKTR 471 (519)
Q Consensus 408 a~~~~~~~~~~~--------~l~---~~~~~~~divInat~~g~~~~~~~~~l~~~----~l~-~~~~v~Di~Y~P~~T~ 471 (519)
.++.+.....+. -++ ++...++||+|-|.--+. +..+ .++ +..+++.-..+|-..+
T Consensus 83 ~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~--------I~~~~~~~~i~~~akiIvegAN~p~t~~ 154 (244)
T PF00208_consen 83 KEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNV--------INEDNAPSLIKSGAKIIVEGANGPLTPE 154 (244)
T ss_dssp HHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTS--------BSCHHHCHCHHTT-SEEEESSSSSBSHH
T ss_pred HHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCe--------eCHHHHHHHHhccCcEEEeCcchhccHH
Confidence 344444111111 011 112246899997732211 2222 232 2578999998887555
Q ss_pred HHHHHHHcCCceeccHH
Q 010050 472 LLKDAEAAGAIIVSGVE 488 (519)
Q Consensus 472 ll~~A~~~G~~~~~Gl~ 488 (519)
=.+.-+++|+.+++..-
T Consensus 155 a~~~L~~rGI~viPD~~ 171 (244)
T PF00208_consen 155 ADEILRERGILVIPDFL 171 (244)
T ss_dssp HHHHHHHTT-EEE-HHH
T ss_pred HHHHHHHCCCEEEcchh
Confidence 55566778998877554
No 270
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=96.04 E-value=0.016 Score=58.21 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=43.9
Q ss_pred CCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 364 ~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
..+.+|.++|.|+. |.|+++|..|+++|++|+|+.|+.++.++.+.++.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~ 53 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG 53 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999999886 99999999999999999999999999888877653
No 271
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.04 E-value=0.02 Score=59.45 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHhcCCcccccc--ccc-cCCCCccEEEECCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI---DFERAKSLASDVMGAARPFED--ILN-FQPEKGAILANATPL 438 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nR---t~~ka~~La~~~~~~~~~~~~--l~~-~~~~~~divInat~~ 438 (519)
.+++|+|+|+|++|..++..++..|++|++++| +++|. ++++++|...+...+ +.+ .....+|++|+++..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~ 248 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGV 248 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCC
Confidence 578999999999999999988899999999998 45554 477788765432221 100 012358999999863
No 272
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.03 E-value=0.019 Score=56.81 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=51.6
Q ss_pred CCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHhcCCc----ccccc---cccc------CCC
Q 010050 366 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF--ERAKSLASDVMGAA----RPFED---ILNF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt~--~ka~~La~~~~~~~----~~~~~---l~~~------~~~ 427 (519)
+++|.++|.|+ +|.|++++..|.+.|++|++++|+. +..++++++++... .++.+ +..+ ...
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56899999996 6999999999999999999998764 55677777664321 12211 1110 124
Q ss_pred CccEEEECCCCC
Q 010050 428 KGAILANATPLG 439 (519)
Q Consensus 428 ~~divInat~~g 439 (519)
..|++||+....
T Consensus 85 ~iD~li~nAG~~ 96 (256)
T PRK07889 85 GLDGVVHSIGFA 96 (256)
T ss_pred CCcEEEEccccc
Confidence 579999987543
No 273
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.03 E-value=0.029 Score=59.86 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=64.8
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC-Cccccccc------------cccCCCCccEEEEC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AARPFEDI------------LNFQPEKGAILANA 435 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~-~~~~~~~l------------~~~~~~~~divIna 435 (519)
+++.|||.|-+|..++..|++.|++|+.++|++++.+++....-. ....++++ .. ..+++|++|-|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEEE
Confidence 579999999999999999999999999999999998876421100 00000000 01 13468999999
Q ss_pred CCCCCCCCCCC--CCCC---c---ccccCCcEEEEEecCCCc
Q 010050 436 TPLGMHPNTDR--VPVS---E---ETLRDYQLVFDAVYTPRK 469 (519)
Q Consensus 436 t~~g~~~~~~~--~~l~---~---~~l~~~~~v~Di~Y~P~~ 469 (519)
.|....++... ..+. . ..++++.+|++....|..
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 98764322100 0110 0 124678888888886554
No 274
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.016 Score=56.29 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=42.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 367899999987 79999999999999999999999999988887665
No 275
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.016 Score=57.60 Aligned_cols=74 Identities=27% Similarity=0.272 Sum_probs=53.8
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc-CCc--cccccccc-------c--CCCCccEE
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA--RPFEDILN-------F--QPEKGAIL 432 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~-~~~--~~~~~l~~-------~--~~~~~div 432 (519)
+++++++|.|+ ||.|++++..|.+.|++|.++.|+.++++++++.++ ... .++.+.++ . .....|++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 45789999988 799999999999999999999999999988877665 211 12221110 0 12457899
Q ss_pred EECCCCC
Q 010050 433 ANATPLG 439 (519)
Q Consensus 433 Inat~~g 439 (519)
||+....
T Consensus 83 i~~ag~~ 89 (273)
T PRK07825 83 VNNAGVM 89 (273)
T ss_pred EECCCcC
Confidence 9987653
No 276
>PRK09242 tropinone reductase; Provisional
Probab=96.00 E-value=0.018 Score=56.67 Aligned_cols=48 Identities=27% Similarity=0.328 Sum_probs=43.1
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+.+++|+++|.|+ ||.|++++..|.+.|++|.++.|+.++++++++++
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l 53 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDEL 53 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 4578999999987 69999999999999999999999999988887665
No 277
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.96 E-value=0.017 Score=58.66 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=35.0
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 406 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~ 406 (519)
++|.|||+|-||.+++..|+..|++|++++|+.++.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 67999999999999999999999999999999987653
No 278
>PRK09186 flagellin modification protein A; Provisional
Probab=95.96 E-value=0.016 Score=56.71 Aligned_cols=46 Identities=33% Similarity=0.450 Sum_probs=41.1
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL 48 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence 35789999988 69999999999999999999999999988887765
No 279
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.021 Score=55.99 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=50.3
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC---C--c--ccccc---ccccCCCCccEEEECC
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---A--A--RPFED---ILNFQPEKGAILANAT 436 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~---~--~--~~~~~---l~~~~~~~~divInat 436 (519)
+++++|.|+ ||.|++++..|.+.|++|+++.|+.++++++.+.... . . .++.+ +........|+|||+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 467999987 7999999999999999999999998888777654321 1 1 12221 1111112689999987
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
...
T Consensus 82 g~~ 84 (257)
T PRK09291 82 GIG 84 (257)
T ss_pred CcC
Confidence 543
No 280
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.03 Score=55.93 Aligned_cols=72 Identities=25% Similarity=0.200 Sum_probs=51.6
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEE
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILA 433 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~divI 433 (519)
+++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+..+... .++.+ +... .....|+||
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv 83 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV 83 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 578999987 799999999999999999999999999888876543221 12211 1110 113479999
Q ss_pred ECCCCC
Q 010050 434 NATPLG 439 (519)
Q Consensus 434 nat~~g 439 (519)
|+....
T Consensus 84 ~~ag~~ 89 (277)
T PRK06180 84 NNAGYG 89 (277)
T ss_pred ECCCcc
Confidence 987654
No 281
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.93 E-value=0.017 Score=63.11 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=36.1
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
++|.|||+|-||+.|+..|+..|++|++++|++++++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA 44 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 679999999999999999999999999999999987653
No 282
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.93 E-value=0.027 Score=55.88 Aligned_cols=73 Identities=22% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCCceEEEEccc---hhhHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CCC
Q 010050 366 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGaG---gaarai~~~L~~~G~~v~i~nRt~---~ka~~La~~~~~~~---~~~~~---l~~~------~~~ 427 (519)
+++|.++|.|++ |.|++++..|++.|++|++..|+. +.+++++++++... .++.+ +..+ ...
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 568999999995 799999999999999999998884 23444544443221 12211 1110 124
Q ss_pred CccEEEECCCC
Q 010050 428 KGAILANATPL 438 (519)
Q Consensus 428 ~~divInat~~ 438 (519)
..|++||+...
T Consensus 86 ~iDilVnnag~ 96 (260)
T PRK06603 86 SFDFLLHGMAF 96 (260)
T ss_pred CccEEEEcccc
Confidence 57999996643
No 283
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.92 E-value=0.015 Score=55.54 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+++++|+|+|+||.|..++..|...|+ ++++++.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999999999999999999999 89998643
No 284
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.92 E-value=0.02 Score=56.23 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=42.6
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++++++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 4578999999988 68999999999999999999999998888777655
No 285
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.91 E-value=0.03 Score=54.28 Aligned_cols=74 Identities=27% Similarity=0.389 Sum_probs=53.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 431 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~di 431 (519)
+++++++|.|+ |+.|++++..|.+.|+.|.+..|+.++.+++...++... .++.+ +..+ .....|+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI 83 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 56789999986 799999999999999999999999999888877654321 11111 1110 1235799
Q ss_pred EEECCCCC
Q 010050 432 LANATPLG 439 (519)
Q Consensus 432 vInat~~g 439 (519)
||++....
T Consensus 84 vi~~ag~~ 91 (245)
T PRK12936 84 LVNNAGIT 91 (245)
T ss_pred EEECCCCC
Confidence 99987653
No 286
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.90 E-value=0.022 Score=49.04 Aligned_cols=67 Identities=31% Similarity=0.332 Sum_probs=49.2
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc----CCccccccccccCCCCccEEEECCC
Q 010050 371 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM----GAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 371 vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~----~~~~~~~~l~~~~~~~~divInat~ 437 (519)
++|+|.|..|+.++..|.+.+.+|+++.+++++.+.+.++.- ....+.+.+.+....+++.+|-+|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence 589999999999999999966699999999999988876641 1112222233334577898888776
No 287
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.019 Score=55.98 Aligned_cols=46 Identities=35% Similarity=0.567 Sum_probs=40.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|.|+ |++|++++..|.+.|++|++++|+.++.+.+.+++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI 50 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56789999998 89999999999999999999999988777776654
No 288
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.90 E-value=0.025 Score=57.85 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=52.9
Q ss_pred eEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCc-c------ccccccccCCCCccEEEECCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-R------PFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~-~------~~~~l~~~~~~~~divInat~~g~ 440 (519)
++.|||+|.+|.++++.|+..|. +|.+++|+.++++..+.++.... . ...+.+ ...++|++|.|.+.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l~~aDiViita~~~~ 79 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DCKGADVVVITAGANQ 79 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--HhCCCCEEEEccCCCC
Confidence 58999999999999999999994 89999999998876555543211 0 001222 3577999999998765
Q ss_pred CCC
Q 010050 441 HPN 443 (519)
Q Consensus 441 ~~~ 443 (519)
.|.
T Consensus 80 ~~~ 82 (308)
T cd05292 80 KPG 82 (308)
T ss_pred CCC
Confidence 543
No 289
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.019 Score=56.74 Aligned_cols=47 Identities=34% Similarity=0.366 Sum_probs=41.4
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARL 52 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 467899999988 58999999999999999999999998887776654
No 290
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.02 Score=56.44 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=41.7
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++.+++
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 51 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADL 51 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 357899999998 69999999999999999999999999888876655
No 291
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.87 E-value=0.02 Score=52.92 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=45.4
Q ss_pred CCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC
Q 010050 365 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 413 (519)
Q Consensus 365 ~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~ 413 (519)
.+.|+.+++.|+| |.|++++.+|++.|++|.-+.|+++..+.|.++...
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~ 53 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPS 53 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCc
Confidence 4678999999999 999999999999999999999999999999988764
No 292
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.87 E-value=0.013 Score=59.96 Aligned_cols=120 Identities=17% Similarity=0.258 Sum_probs=76.3
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
+..+.||+|.|+|.|..|+++++.|...|+.|.-.+|+..+-+... +++....++++ ...++|+||-+.|..-..
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~-~~~~~~~d~~~----~~~~sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAY-EYYAEFVDIEE----LLANSDVIVVNCPLTKET 231 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHH-HhcccccCHHH----HHhhCCEEEEecCCCHHH
Confidence 3567899999999999999999999999988888999877654443 33444444443 346789999988875321
Q ss_pred CCCCCCCCcc---cccCCcEEEEEecCCC-cCHHHHHHHHcCCceeccHHHH
Q 010050 443 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF 490 (519)
Q Consensus 443 ~~~~~~l~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~~~Gl~ml 490 (519)
. -.+..+ ..+++.+++.+.=.+- +-.-+.+|-+.|-..--|++.+
T Consensus 232 ~---~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf 280 (336)
T KOG0069|consen 232 R---HLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVF 280 (336)
T ss_pred H---HHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccccccccc
Confidence 1 124433 3455666665543332 2233344445555555555543
No 293
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.02 Score=56.05 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=41.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++.+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI 51 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367899999988 69999999999999999999999998877766554
No 294
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.046 Score=59.75 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
+.+++++|+|.|+.|++++..|.++|++|++++...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 457899999999999999999999999999999654
No 295
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.81 E-value=0.028 Score=58.04 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc--ccccc--CCCCccEEEECCCCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE--DILNF--QPEKGAILANATPLGM 440 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~-~~~~--~l~~~--~~~~~divInat~~g~ 440 (519)
.+++|+|.|+|++|.+++..++.+|+ +|+++.|++++.+ +++++|... ++.. ++.+. ....+|++|+++....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS-LAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH-HHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence 57899999999999999988889999 7999999988864 667787643 2221 11110 1124799999986311
Q ss_pred CCCCCCCCCCcccccCCcEEEEEec
Q 010050 441 HPNTDRVPVSEETLRDYQLVFDAVY 465 (519)
Q Consensus 441 ~~~~~~~~l~~~~l~~~~~v~Di~Y 465 (519)
. ..-....++++..++.+-.
T Consensus 248 --~---~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 --S---INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --H---HHHHHHHhhcCCEEEEEcc
Confidence 0 0011234666666666643
No 296
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.021 Score=55.95 Aligned_cols=47 Identities=36% Similarity=0.546 Sum_probs=41.6
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID 50 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 45789999987 699999999999999999999999998888877663
No 297
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.78 E-value=0.019 Score=58.62 Aligned_cols=70 Identities=34% Similarity=0.443 Sum_probs=54.5
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~ 437 (519)
+.-+.||.++|.|.|-.||.++..|...|++|.|+.-++-+|-+-+=+ |....+.++ ....+|++|.||.
T Consensus 204 n~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md-Gf~V~~m~~----Aa~~gDifiT~TG 273 (420)
T COG0499 204 NVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD-GFRVMTMEE----AAKTGDIFVTATG 273 (420)
T ss_pred ceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc-CcEEEEhHH----hhhcCCEEEEccC
Confidence 466889999999999999999999999999999999999887543311 333444443 3456799998884
No 298
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=95.77 E-value=0.027 Score=55.71 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCC
Q 010050 366 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt 400 (519)
+++|.++|.|+ +|.|++++..|.+.|++|++..|+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 56899999997 499999999999999999888654
No 299
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.77 E-value=0.023 Score=61.01 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=53.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~-----~~~~l~~~~~~~~divInat~~ 438 (519)
+++|+|+|..|+.++..|.+.|.+|++++|++++.+.+.+..+...+ +...+.+....++|.+|.+|+-
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 68999999999999999999999999999999999988764543221 1222333235678999988864
No 300
>PRK06484 short chain dehydrogenase; Validated
Probab=95.76 E-value=0.028 Score=61.50 Aligned_cols=74 Identities=27% Similarity=0.339 Sum_probs=55.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA 430 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~d 430 (519)
...+|.++|.|+ ||.|++++..|.+.|++|++++|+.++.++++++++... .++.+ +..+ .....|
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD 345 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 346899999987 599999999999999999999999999999988775432 12211 1110 124579
Q ss_pred EEEECCCC
Q 010050 431 ILANATPL 438 (519)
Q Consensus 431 ivInat~~ 438 (519)
++||+...
T Consensus 346 ~li~nAg~ 353 (520)
T PRK06484 346 VLVNNAGI 353 (520)
T ss_pred EEEECCCC
Confidence 99998754
No 301
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.025 Score=55.93 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=42.3
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.++++++++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++.+.+
T Consensus 6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3567899999988 48999999999999999999999999888887765
No 302
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=95.75 E-value=0.037 Score=53.93 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=33.2
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~ 401 (519)
+++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 67899999998 6999999999999999999999975
No 303
>PRK08589 short chain dehydrogenase; Validated
Probab=95.75 E-value=0.023 Score=56.65 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=39.8
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|.|+ ||.|++++..|.+.|++|+++.|+ ++++++++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~ 49 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKI 49 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHH
Confidence 56899999988 699999999999999999999999 7777776665
No 304
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.74 E-value=0.025 Score=56.07 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHhcCCc---cccc---ccccc------CCC
Q 010050 366 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFE---DILNF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt~---~ka~~La~~~~~~~---~~~~---~l~~~------~~~ 427 (519)
+++|.++|.|+ +|.|++++..|.+.|++|++..|+. +++++++++.+... .++. ++..+ ...
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD 83 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence 56899999994 5999999999999999999887653 34445544433211 1211 11110 124
Q ss_pred CccEEEECCCCC
Q 010050 428 KGAILANATPLG 439 (519)
Q Consensus 428 ~~divInat~~g 439 (519)
..|++||+...+
T Consensus 84 ~iD~lVnnAG~~ 95 (261)
T PRK08690 84 GLDGLVHSIGFA 95 (261)
T ss_pred CCcEEEECCccC
Confidence 579999987654
No 305
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.026 Score=55.26 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=42.5
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++++++.+++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3577899999987 69999999999999999999999999888887765
No 306
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.72 E-value=0.021 Score=57.93 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=48.1
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc--------cc---cccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RP---FEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~--------~~---~~~l~~~~~~~~divInat~~ 438 (519)
+++|+|+|.+|.+++..|++.|.+|+++.| .++.+++.+. +... .+ ..+..+ ....+|+||-|++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vilavk~ 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-GLVIRSDHGDAVVPGPVITDPEE-LTGPFDLVILAVKA 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-CeEEEeCCCeEEecceeecCHHH-ccCCCCEEEEEecc
Confidence 689999999999999999999999999999 7887777642 2110 00 111111 23568999988875
Q ss_pred C
Q 010050 439 G 439 (519)
Q Consensus 439 g 439 (519)
.
T Consensus 79 ~ 79 (305)
T PRK12921 79 Y 79 (305)
T ss_pred c
Confidence 3
No 307
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.053 Score=58.58 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=30.8
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
.+++++|+|.|..|++++..|.+ |++|+++++..+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~ 39 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKA 39 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCC
Confidence 47899999999999999999995 999999996543
No 308
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.69 E-value=0.024 Score=62.10 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=36.4
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
++|.|||+|-||+.++..|+..|++|++++|++++++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~ 46 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAA 46 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 679999999999999999999999999999999987763
No 309
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.69 E-value=0.016 Score=57.16 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-cCCcc--cccc----ccccCC-CCccEEEE
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAAR--PFED----ILNFQP-EKGAILAN 434 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~-~~~~~--~~~~----l~~~~~-~~~divIn 434 (519)
.+.++++++|+|+ |+.|++++..|.+.|++|+.+.|+.++++++.... +...+ ++.+ +.+ .. ...|+||+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~-~~~~~~d~vi~ 91 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVE-AIGDDSDAVIC 91 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHH-HhhcCCCEEEE
Confidence 3456789999996 89999999999999999999999998876553321 11111 2222 111 23 46899999
Q ss_pred CCCCC
Q 010050 435 ATPLG 439 (519)
Q Consensus 435 at~~g 439 (519)
+++..
T Consensus 92 ~~g~~ 96 (251)
T PLN00141 92 ATGFR 96 (251)
T ss_pred CCCCC
Confidence 87653
No 310
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.023 Score=57.67 Aligned_cols=47 Identities=30% Similarity=0.468 Sum_probs=40.9
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+++++..+++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999987 79999999999999999999999998877665544
No 311
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.66 E-value=0.021 Score=60.75 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=35.1
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
..+.||++.|+|.|.+|+.++..+...|++|..++|+.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 45789999999999999999999999999999999874
No 312
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.65 E-value=0.029 Score=51.05 Aligned_cols=44 Identities=34% Similarity=0.501 Sum_probs=38.7
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCC-eEEEEeCC--HHHHHHHHHHhc
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDID--FERAKSLASDVM 412 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~-~v~i~nRt--~~ka~~La~~~~ 412 (519)
|.++|+|+ ||.|++++..|.+.|. +|.++.|+ .++++++++++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~ 48 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK 48 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc
Confidence 57899987 6999999999999988 89999999 888888877764
No 313
>PRK06720 hypothetical protein; Provisional
Probab=95.65 E-value=0.031 Score=51.98 Aligned_cols=48 Identities=33% Similarity=0.618 Sum_probs=41.3
Q ss_pred CCCCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..++++.++|.|++ |+|++++..|.+.|++|.++.|+.+.++..++++
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l 60 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI 60 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 34678999999985 7999999999999999999999988877666554
No 314
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.65 E-value=0.035 Score=54.62 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=33.1
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~ 401 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 467899999987 5999999999999999999999874
No 315
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.65 E-value=0.032 Score=57.42 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=52.3
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcC-------C-ccc-cccccccCCCCccEEEECC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------A-ARP-FEDILNFQPEKGAILANAT 436 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~-------~-~~~-~~~l~~~~~~~~divInat 436 (519)
+.+++.|||||.+|.++++.++..|. +|+++++++++++.-+-++.. . .+. ..+.+ ...++|+||+|.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~--~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE--DIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH--HhCCCCEEEECC
Confidence 34789999999999999999999996 999999998866533222211 1 011 12332 357899999988
Q ss_pred CCCCCCC
Q 010050 437 PLGMHPN 443 (519)
Q Consensus 437 ~~g~~~~ 443 (519)
..+-.|.
T Consensus 83 g~~~~~~ 89 (321)
T PTZ00082 83 GLTKRPG 89 (321)
T ss_pred CCCCCCC
Confidence 7655443
No 316
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.059 Score=58.01 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred CceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
+..++|+|.||.|++++..|.++|++|+++++..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3579999999999999999999999999999754
No 317
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.61 E-value=0.027 Score=57.61 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=42.0
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
.++|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~ 51 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG 51 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence 45789999987 799999999999999999999999999988887763
No 318
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.028 Score=56.26 Aligned_cols=46 Identities=33% Similarity=0.452 Sum_probs=41.2
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|.++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l 50 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL 50 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 67899999986 69999999999999999999999998888877665
No 319
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.028 Score=58.05 Aligned_cols=47 Identities=36% Similarity=0.595 Sum_probs=41.9
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l 52 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEI 52 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 366889999988 79999999999999999999999999888887665
No 320
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.59 E-value=0.028 Score=55.28 Aligned_cols=47 Identities=43% Similarity=0.544 Sum_probs=42.3
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+.+++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 51 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG 51 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC
Confidence 56789999987 799999999999999999999999999888887764
No 321
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.59 E-value=0.036 Score=54.94 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHhcCC-c--cccc---ccccc------CCC
Q 010050 366 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDI---DFERAKSLASDVMGA-A--RPFE---DILNF------QPE 427 (519)
Q Consensus 366 ~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nR---t~~ka~~La~~~~~~-~--~~~~---~l~~~------~~~ 427 (519)
+++|.++|.|+ +|.|++++..|.+.|++|++..| +.++.+++.++++.. . .++. ++..+ ...
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence 56899999994 59999999999999999988754 456666666655421 1 1221 11110 124
Q ss_pred CccEEEECCCC
Q 010050 428 KGAILANATPL 438 (519)
Q Consensus 428 ~~divInat~~ 438 (519)
..|++||+...
T Consensus 84 ~iD~lvnnAG~ 94 (260)
T PRK06997 84 GLDGLVHSIGF 94 (260)
T ss_pred CCcEEEEcccc
Confidence 57999998754
No 322
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.59 E-value=0.025 Score=57.18 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCccc-------cccccc-----cCCCCccEEE
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP-------FEDILN-----FQPEKGAILA 433 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~~~-------~~~l~~-----~~~~~~divI 433 (519)
.|.+|||+|||.+|......++..|+ +|.+++-.+.|. ++|++||...+. .+++.+ +....+|+.|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 47899999999999999999999999 999999998886 677779864321 121111 1124589999
Q ss_pred ECCCCCC
Q 010050 434 NATPLGM 440 (519)
Q Consensus 434 nat~~g~ 440 (519)
+||.+.+
T Consensus 248 dCsG~~~ 254 (354)
T KOG0024|consen 248 DCSGAEV 254 (354)
T ss_pred EccCchH
Confidence 9998754
No 323
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.078 Score=57.21 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=29.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
+++|+|.|++|+++++.|.+.|++|+++++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999754
No 324
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.57 E-value=0.032 Score=55.25 Aligned_cols=48 Identities=29% Similarity=0.345 Sum_probs=42.4
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.++.+|+++|.|+ ||+|++++..|.+.|++|++.+|+.++.+++.+.+
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 4678899999988 58999999999999999999999998888776665
No 325
>PRK06194 hypothetical protein; Provisional
Probab=95.54 E-value=0.03 Score=55.98 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=40.6
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++++||.|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL 50 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence 45789999987 79999999999999999999999988887777665
No 326
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.54 E-value=0.12 Score=54.27 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=85.2
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH------------------HHHHHHHHhcCCccccccccccC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE------------------RAKSLASDVMGAARPFEDILNFQ 425 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~------------------ka~~La~~~~~~~~~~~~l~~~~ 425 (519)
.+++|++|.|=|.|.+|+-++..|.+.|++|+.++-+.. +.+.+++.++.+.++-+++ .
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~---~ 279 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEEL---L 279 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcccccc---c
Confidence 458999999999999999999999999998887776655 5556666666544444433 2
Q ss_pred CCCccEEEECCCCCCCCCCCCCCCCc---ccccCCcEEEEEecCCCcCHHHHHHHHcCCceeccHH---------HHHHH
Q 010050 426 PEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVE---------MFLRQ 493 (519)
Q Consensus 426 ~~~~divInat~~g~~~~~~~~~l~~---~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~~~Gl~---------mli~Q 493 (519)
..++||++-|---+. +.. ..|+. .+|..-.-+|....-.+.-.++|+-++++.- -|-++
T Consensus 280 ~~~cDIl~PcA~~n~--------I~~~na~~l~a-k~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~ 350 (411)
T COG0334 280 EVDCDILIPCALENV--------ITEDNADQLKA-KIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWV 350 (411)
T ss_pred cccCcEEcccccccc--------cchhhHHHhhh-cEEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHH
Confidence 345899884433211 222 22333 3788888778765555555677776655432 23344
Q ss_pred HHHHHHHhcCCCCC
Q 010050 494 AIGQFNLFTGKEAP 507 (519)
Q Consensus 494 a~~qf~lw~g~~~~ 507 (519)
.-.|-..|+..++.
T Consensus 351 qn~~~~~wt~eev~ 364 (411)
T COG0334 351 QNAQGLYWTEEEVD 364 (411)
T ss_pred hhcccCccCHHHHH
Confidence 45555667765544
No 327
>PRK06153 hypothetical protein; Provisional
Probab=95.54 E-value=0.027 Score=58.82 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nR 399 (519)
+++++|+|+|+||.|..++..|++.|+ +|++++.
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 457899999999999999999999999 9998653
No 328
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.53 E-value=0.025 Score=58.16 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=49.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-cCCc---ccc-------ccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAA---RPF-------EDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~-~~~~---~~~-------~~l~~~~~~~~divInat~~ 438 (519)
++.|||+|.+|.+++..|.+.|.+|++++|+.+.++++.+.- +... ..+ .++.+.....+|+||-|+|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 589999999999999999999999999999999888886531 1110 001 11111012467999998875
Q ss_pred C
Q 010050 439 G 439 (519)
Q Consensus 439 g 439 (519)
-
T Consensus 82 ~ 82 (326)
T PRK14620 82 Q 82 (326)
T ss_pred H
Confidence 3
No 329
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.52 E-value=0.018 Score=60.89 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=31.2
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+.+++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 456789999999999999999999999 99987743
No 330
>PRK06484 short chain dehydrogenase; Validated
Probab=95.52 E-value=0.03 Score=61.32 Aligned_cols=73 Identities=27% Similarity=0.339 Sum_probs=54.0
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI 431 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~di 431 (519)
.++|.++|.|+ +|.|++++..|.+.|++|+++.|+.++.++++++++... .++.+ +..+ .....|+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV 82 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 35789999988 589999999999999999999999999998888775432 12211 1110 1245799
Q ss_pred EEECCCC
Q 010050 432 LANATPL 438 (519)
Q Consensus 432 vInat~~ 438 (519)
+||+...
T Consensus 83 li~nag~ 89 (520)
T PRK06484 83 LVNNAGV 89 (520)
T ss_pred EEECCCc
Confidence 9998654
No 331
>PRK07411 hypothetical protein; Validated
Probab=95.51 E-value=0.018 Score=60.84 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt 400 (519)
+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999999999999999999999 99987653
No 332
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.51 E-value=0.033 Score=54.25 Aligned_cols=46 Identities=26% Similarity=0.532 Sum_probs=40.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++++++|+|+ ||.|++++..|.+.|++|+++.|+.++.+++.+++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAEC 49 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56789999998 89999999999999999999999998877776654
No 333
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.031 Score=54.38 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccccc---cc------CCCCccE
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDIL---NF------QPEKGAI 431 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~l~---~~------~~~~~di 431 (519)
+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.++++... .++.+.+ .+ .....|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 56789999988 799999999999999999999999888888877765432 1111111 00 1235799
Q ss_pred EEECCCC
Q 010050 432 LANATPL 438 (519)
Q Consensus 432 vInat~~ 438 (519)
+||+...
T Consensus 84 vi~~ag~ 90 (249)
T PRK06500 84 VFINAGV 90 (249)
T ss_pred EEECCCC
Confidence 9998754
No 334
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.49 E-value=0.033 Score=54.63 Aligned_cols=46 Identities=33% Similarity=0.592 Sum_probs=41.3
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|.|+ |++|++++..|.+.|++|.++.|++++.+++.+++
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI 51 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Confidence 56899999988 89999999999999999999999998887777665
No 335
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.49 E-value=0.011 Score=63.57 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=65.9
Q ss_pred hhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC--Cc---cccccccccCCCCccEEEECCCCCCCCCCCCCCCC--c
Q 010050 379 AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA---RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--E 451 (519)
Q Consensus 379 aarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~--~~---~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~--~ 451 (519)
||+.++..|.+.|++|+++|||+++++++++..+. .. -+++++.+ .++.+|+||-+.|.|-. ++.. +. .
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~-~l~~~~~Ii~mv~~g~~--v~~V-i~~l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVA-SLEKPRKILLMVKAGAP--VDAV-IEQLL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHh-hCCCCCEEEEECCCchH--HHHH-HHHHH
Confidence 68999999999999999999999999999875331 11 13333322 23457999988876631 1111 11 1
Q ss_pred ccccCCcEEEEEec-CCCcCH-HHHHHHHcCCce
Q 010050 452 ETLRDYQLVFDAVY-TPRKTR-LLKDAEAAGAII 483 (519)
Q Consensus 452 ~~l~~~~~v~Di~Y-~P~~T~-ll~~A~~~G~~~ 483 (519)
..+.++.+++|..- .|..|. ..++++++|+..
T Consensus 77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~f 110 (459)
T PRK09287 77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHF 110 (459)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeE
Confidence 23567899999974 466553 345555666543
No 336
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.49 E-value=0.49 Score=46.25 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhc--CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 010050 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (519)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~--~~~pii~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (519)
..+++++. +++.+.|+|.+=+..- .+....+. .+.|++..++...-=|.-..+.+....-++.+++
T Consensus 20 ~~d~~~~~---~~~~~~g~~av~v~~~---------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~ 87 (235)
T cd00958 20 LEDPEETV---KLAAEGGADAVALTKG---------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR 87 (235)
T ss_pred ccCHHHHH---HHHHhcCCCEEEeChH---------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH
Confidence 44555554 4555678998855311 22221111 3557776666321111102233555566888999
Q ss_pred hCCcEEEEeccccch-------HHHHhHh-ccCCCceEEEeecCCCCC----CCHhHHHHHHHHHHHcCCCEEEEEcccC
Q 010050 97 LGADYVDFELKVASN-------ILGKQYS-SHQSGTRFIVSCNLDCET----PSEEDLGYLVSRMQATGADIIKLVFSVN 164 (519)
Q Consensus 97 ~~~~~vDiEl~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~t----p~~~~l~~~~~~~~~~gadi~Kia~~~~ 164 (519)
.|++.||+.++.... ...++.. .++.+.++|+.-|..... -+.+++....+.+.+.|||++|+-.+ .
T Consensus 88 ~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~-~ 166 (235)
T cd00958 88 LGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT-G 166 (235)
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC-C
Confidence 999999998865421 2333442 345789999965541100 12345665577788999999999532 2
Q ss_pred CHhHHHHHHHHhccCCCCEEEE
Q 010050 165 DITEIARIFQLLSHCQVPIIAY 186 (519)
Q Consensus 165 ~~~D~~~l~~~~~~~~~p~i~~ 186 (519)
|...+-++.+..+.|++++
T Consensus 167 ---~~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 167 ---DAESFKEVVEGCPVPVVIA 185 (235)
T ss_pred ---CHHHHHHHHhcCCCCEEEe
Confidence 3333444444456776554
No 337
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.47 E-value=0.023 Score=56.95 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~ 440 (519)
.+++|+|.|||.|-=|++=+..|...|.+|.|-.|....+.+.|++-|....++++ ..+++|+|++-+|-..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~e----a~k~ADvim~L~PDe~ 86 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEE----AAKRADVVMILLPDEQ 86 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHH----HhhcCCEEEEeCchhh
Confidence 57899999999999999999999999999999999888888888877766555554 4567999999998544
No 338
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.033 Score=55.00 Aligned_cols=47 Identities=43% Similarity=0.548 Sum_probs=39.9
Q ss_pred CCCCceEEEEcc-c-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-G-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-G-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++++++|.|+ | |.|++++..|.+.|++|++++|+.++.++..+++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 356899999997 6 8999999999999999999999988776665543
No 339
>PLN02253 xanthoxin dehydrogenase
Probab=95.46 E-value=0.034 Score=55.50 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=42.4
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.++++++++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 63 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG 63 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Confidence 467899999987 699999999999999999999999888888877663
No 340
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.46 E-value=0.031 Score=64.04 Aligned_cols=116 Identities=21% Similarity=0.176 Sum_probs=73.2
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
+++.|||+|.+|.+++..|.+.|. +|++++|+.++++.. .+++.......++.+ ...++|+||.|+|.......-
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-~~~g~~~~~~~~~~~-~~~~aDvVilavp~~~~~~vl- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-VSLGVIDRGEEDLAE-AVSGADVIVLAVPVLAMEKVL- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-HHCCCCCcccCCHHH-HhcCCCEEEECCCHHHHHHHH-
Confidence 579999999999999999999983 899999999887654 344432111222322 346789999999864321100
Q ss_pred CCCCcccccCCcEEEEEecCCCcCHHHHHHHH----cCCceeccHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA----AGAIIVSGVEMF 490 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~----~G~~~~~Gl~ml 490 (519)
..+ ...++++.++.|+.-.+. ..++..++ .+.+++++..|.
T Consensus 81 ~~l-~~~~~~~~ii~d~~svk~--~~~~~l~~~~~~~~~r~~~~hPm~ 125 (735)
T PRK14806 81 ADL-KPLLSEHAIVTDVGSTKG--NVVDAARAVFGELPAGFVPGHPIA 125 (735)
T ss_pred HHH-HHhcCCCcEEEEcCCCch--HHHHHHHHhccccCCeEEecCCcC
Confidence 001 123456788999986532 22333333 245566666665
No 341
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.033 Score=54.29 Aligned_cols=46 Identities=46% Similarity=0.600 Sum_probs=40.9
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAI 49 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH
Confidence 56889999988 79999999999999999999999998887777665
No 342
>PLN02477 glutamate dehydrogenase
Probab=95.46 E-value=0.18 Score=53.52 Aligned_cols=129 Identities=21% Similarity=0.340 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEE-EEeCC----------HHHHHH
Q 010050 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID----------FERAKS 406 (519)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~-i~nRt----------~~ka~~ 406 (519)
-+.|...+++..++.. +.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+ .+...+
T Consensus 185 Tg~Gv~~~~~~~~~~~---------g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~ 255 (410)
T PLN02477 185 TGRGVVFATEALLAEH---------GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRK 255 (410)
T ss_pred chHHHHHHHHHHHHHc---------CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 4577777777766522 357899999999999999999999999999776 77776 555544
Q ss_pred HHHHhcC-------CccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccc--cCCcEEEEEecCCCcCHHHHHH-
Q 010050 407 LASDVMG-------AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL--RDYQLVFDAVYTPRKTRLLKDA- 476 (519)
Q Consensus 407 La~~~~~-------~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l--~~~~~v~Di~Y~P~~T~ll~~A- 476 (519)
..++-+. ..++-+++ ...++||+|-|---+. +..+.. -+..+|+.-.-+|- |+=..+.
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~---l~~~~DvliP~Al~~~--------I~~~na~~i~ak~I~egAN~p~-t~ea~~~L 323 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDI---LVEPCDVLIPAALGGV--------INKENAADVKAKFIVEAANHPT-DPEADEIL 323 (410)
T ss_pred HHHhcCchhccccceEecCccc---eeccccEEeecccccc--------CCHhHHHHcCCcEEEeCCCCCC-CHHHHHHH
Confidence 3333221 11111221 1246899985542221 222211 13567888887786 6533333
Q ss_pred HHcCCceeccH
Q 010050 477 EAAGAIIVSGV 487 (519)
Q Consensus 477 ~~~G~~~~~Gl 487 (519)
+++|+.+++..
T Consensus 324 ~~rGI~~~PD~ 334 (410)
T PLN02477 324 RKKGVVVLPDI 334 (410)
T ss_pred HHCCcEEEChH
Confidence 45676665544
No 343
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.45 E-value=0.035 Score=57.05 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHhcCC---c--ccccc---ccccCCCCccEEEE
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGA---A--RPFED---ILNFQPEKGAILAN 434 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G--~~v~i~nRt~~ka~~La~~~~~~---~--~~~~~---l~~~~~~~~divIn 434 (519)
+++++++|.|+ |+.|++++..|.+.| .+|++++|+..+...+...+... . .++.+ +.+ ...+.|+||+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~-~~~~iD~Vih 80 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTR-ALRGVDYVVH 80 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHH-HHhcCCEEEE
Confidence 35789999987 889999999999886 58999999877766665554321 1 12222 222 2346899999
Q ss_pred CCCC
Q 010050 435 ATPL 438 (519)
Q Consensus 435 at~~ 438 (519)
+...
T Consensus 81 ~Ag~ 84 (324)
T TIGR03589 81 AAAL 84 (324)
T ss_pred Cccc
Confidence 8654
No 344
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.44 E-value=0.03 Score=55.17 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCCceEEEEccc---hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGaG---gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|.++|.|++ |+|++++..|.+.|++|+++.|+. +.++..+++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~ 52 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL 52 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh
Confidence 678999999985 999999999999999999999984 444433333
No 345
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.43 E-value=0.046 Score=58.70 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=56.2
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-cCCc-----cccccccccCCCCccEEEECCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAA-----RPFEDILNFQPEKGAILANATPL 438 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~-~~~~-----~~~~~l~~~~~~~~divInat~~ 438 (519)
...++++|+|+|..|+.++..|.+.|.+|+++.+++++.+.+.+.+ +... .+.+.+.+....++|.+|.+++-
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 4578999999999999999999999999999999999998888764 2211 12223333346788999987763
No 346
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.033 Score=54.60 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=39.0
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 478999988 58999999999999999999999998888877665
No 347
>PRK08324 short chain dehydrogenase; Validated
Probab=95.42 E-value=0.03 Score=63.65 Aligned_cols=50 Identities=42% Similarity=0.645 Sum_probs=43.9
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 413 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~ 413 (519)
..+.+++++|+|+ ||+|++++..|.+.|++|++++|+.++.+.+++.++.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~ 468 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG 468 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc
Confidence 3467899999995 8999999999999999999999999998888877653
No 348
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.40 E-value=0.067 Score=56.57 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=62.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC------------Cccccc---cccccCCCCccEEEE
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG------------AARPFE---DILNFQPEKGAILAN 434 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~------------~~~~~~---~l~~~~~~~~divIn 434 (519)
+|.|+|+|-+|..++..|+. |++|+.++|+.++.+++.+.... ....+. +..+ ...++|++|-
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~-~~~~ad~vii 79 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE-AYRDADYVII 79 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh-hhcCCCEEEE
Confidence 58899999999999977764 89999999999999888653211 000110 1111 2467899999
Q ss_pred CCCCCCCCCCCC---CCCCc-----ccccCCcEEEEEecCCCcC
Q 010050 435 ATPLGMHPNTDR---VPVSE-----ETLRDYQLVFDAVYTPRKT 470 (519)
Q Consensus 435 at~~g~~~~~~~---~~l~~-----~~l~~~~~v~Di~Y~P~~T 470 (519)
|+|......... ..+.. ..++++.+|++.+..|..|
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF 123 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence 988643211000 00100 1146788999988877654
No 349
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.037 Score=53.46 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=41.3
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+.+++++|+|+ |+.|++++..|.+.|++|.+++|++++.+.+.+.+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence 35688999987 789999999999999999999999998888877664
No 350
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.04 Score=53.59 Aligned_cols=46 Identities=35% Similarity=0.403 Sum_probs=41.1
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++++++|+|+ |+.|++++..|.+.|++|.++.|+.++.+.+.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL 51 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 56899999997 79999999999999999999999999888877665
No 351
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.38 E-value=0.18 Score=54.05 Aligned_cols=134 Identities=21% Similarity=0.183 Sum_probs=80.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEEE-e----------CCHHHHH
Q 010050 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF-D----------IDFERAK 405 (519)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~-n----------Rt~~ka~ 405 (519)
.-+.|...+++..+.+. +.+++|++|.|.|.|.+|+.++..|.+.|++|+.+ + -+.+...
T Consensus 210 aTg~Gv~~~~~~~~~~~---------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~ 280 (445)
T PRK09414 210 ATGYGLVYFAEEMLKAR---------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLK 280 (445)
T ss_pred cccHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHH
Confidence 44567777777666522 35789999999999999999999999999976655 5 3555444
Q ss_pred HHHHHh-----------cCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCccccc--CCcEEEEEecCCCcCHH
Q 010050 406 SLASDV-----------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTRL 472 (519)
Q Consensus 406 ~La~~~-----------~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l~--~~~~v~Di~Y~P~~T~l 472 (519)
+..+.- +...++-+++ ...++||+|-|+.-+.- +..+ ...+. +..+|+.-.-+|- |+-
T Consensus 281 ~~k~~~~~~l~~~~~~~~~~~i~~~~i---~~~d~DVliPaAl~n~I---t~~~--a~~i~~~~akiIvEgAN~p~-t~~ 351 (445)
T PRK09414 281 EIKEVRRGRISEYAEEFGAEYLEGGSP---WSVPCDIALPCATQNEL---DEED--AKTLIANGVKAVAEGANMPS-TPE 351 (445)
T ss_pred HHHHhcCCchhhhhhhcCCeecCCccc---cccCCcEEEecCCcCcC---CHHH--HHHHHHcCCeEEEcCCCCCC-CHH
Confidence 433321 1111111121 22468999987764321 1111 11232 4578888888887 643
Q ss_pred HH-HHHHcCCceeccHH
Q 010050 473 LK-DAEAAGAIIVSGVE 488 (519)
Q Consensus 473 l~-~A~~~G~~~~~Gl~ 488 (519)
.. .-.++|+.+++..-
T Consensus 352 A~~~L~~rGI~~vPD~l 368 (445)
T PRK09414 352 AIEVFLEAGVLFAPGKA 368 (445)
T ss_pred HHHHHHHCCcEEECchh
Confidence 33 22456776665543
No 352
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.36 E-value=0.04 Score=53.33 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=40.6
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++++++|.|+ |+.|.+++..|.+.|++|+++.|+.++++.+.+.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTL 49 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 56789999988 68999999999999999999999999888776554
No 353
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.36 E-value=0.035 Score=54.64 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+++|+++|.|+ ||.|++++..|.+.|++|.++.|+ ++.+++.+.+
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~ 58 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLI 58 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH
Confidence 3477899999988 589999999999999999999998 5555554443
No 354
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.35 E-value=0.037 Score=54.01 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=41.6
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++++++|.|+ |+.|.+++..|.+.|++|++++|+.++++++.+++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 467899999987 68999999999999999999999999888877665
No 355
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.04 Score=54.77 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=41.2
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+.+.+++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l 51 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEI 51 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 367899999998 79999999999999999999999988877776554
No 356
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.34 E-value=0.19 Score=48.06 Aligned_cols=131 Identities=17% Similarity=0.078 Sum_probs=85.9
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~-~~~pii~T~R~~~eGG~~~~~~~~~~~l 90 (519)
++||.|-..+.++...-++.+ ..|.|.+|+-.-++.... .+.++.+++. .+.++++..... + ...+ .
T Consensus 1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d-------~~~~--~ 68 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-D-------AGEY--E 68 (206)
T ss_pred CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-c-------chHH--H
Confidence 478999999999999888776 788999998544444333 2467777765 356677665433 1 1111 3
Q ss_pred HHHHHHhCCcEEEEeccccchHHHHhH-hccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 010050 91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (519)
Q Consensus 91 l~~~~~~~~~~vDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia 160 (519)
++.+.+.|+++|-+-...+.....++. ..++.+.++++..++.. | ..+..+.+.+.|+|++|+-
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEEc
Confidence 566788999998776665432223333 24456899998766632 2 2344455567799999883
No 357
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.33 E-value=0.042 Score=54.27 Aligned_cols=46 Identities=35% Similarity=0.575 Sum_probs=40.9
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++++++|+|+ ||.|++++..|.+.|++|+++.|+.++.+++..++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL 49 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45789999986 79999999999999999999999999888887664
No 358
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.038 Score=54.98 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=48.7
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--ccc---ccccc------CCCCccEEEECC
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFE---DILNF------QPEKGAILANAT 436 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~~---~l~~~------~~~~~divInat 436 (519)
|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+... +...+ ++. ++.++ .....|++||+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA-GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 57899987 7999999999999999999999998887766532 22111 111 11110 124579999988
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
..+
T Consensus 81 g~~ 83 (274)
T PRK05693 81 GYG 83 (274)
T ss_pred CCC
Confidence 653
No 359
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.32 E-value=0.08 Score=54.98 Aligned_cols=108 Identities=18% Similarity=0.097 Sum_probs=65.2
Q ss_pred ceEEEEccchhhHHHHHHHHhCC--Ce-EEEEeCCHHHHHHHHHHhcCC-ccccccccccCCCCccEEEECC--CCCCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFERAKSLASDVMGA-ARPFEDILNFQPEKGAILANAT--PLGMHP 442 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G--~~-v~i~nRt~~ka~~La~~~~~~-~~~~~~l~~~~~~~~divInat--~~g~~~ 442 (519)
.+|.|+|+ ++|+.-+.++.+.. ++ +-|++|+.++|+++|++++.. +.+++++-+ -.+.|+|...| |-+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~~H~ 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQGS 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCccHH
Confidence 58999999 78988888888754 64 779999999999999999864 234444321 12344444422 222221
Q ss_pred CCCCCCCCcccccCCcEEEEEecCCC----cCHHHHHHHHcCCceecc
Q 010050 443 NTDRVPVSEETLRDYQLVFDAVYTPR----KTRLLKDAEAAGAIIVSG 486 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di~Y~P~----~T~ll~~A~~~G~~~~~G 486 (519)
++....++.+.-| ++=+|. -..+++.|+++|+...-+
T Consensus 81 -----e~a~~aL~aGkHV--L~EKPla~~Ea~el~~~A~~~g~~l~v~ 121 (343)
T TIGR01761 81 -----ALARALLARGIHV--LQEHPLHPRDIQDLLRLAERQGRRYLVN 121 (343)
T ss_pred -----HHHHHHHhCCCeE--EEcCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 1223344443222 122333 246777788888875543
No 360
>PRK06483 dihydromonapterin reductase; Provisional
Probab=95.30 E-value=0.045 Score=53.05 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=33.2
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHH
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAK 405 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~ 405 (519)
+|+++|.|+ ||.|++++..|.+.|++|.+++|+.++..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 40 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI 40 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence 468999987 68999999999999999999999876543
No 361
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.043 Score=54.41 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|...|++|+++.|+.++.+.+.+++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 367899999988 79999999999999999999999988877776554
No 362
>PRK08643 acetoin reductase; Validated
Probab=95.29 E-value=0.04 Score=54.09 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=39.5
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+|+++|+|+ ||.|++++..|.+.|++|++++|+.++.++++.++.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 578999987 699999999999999999999999988888877653
No 363
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.043 Score=53.34 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=39.7
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++|+++|+|+ |+.|++++..|.+.|++|++++|+.++.+.+.+.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3578999987 89999999999999999999999998888877654
No 364
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.036 Score=55.38 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=38.2
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 409 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~ 409 (519)
+++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 578999998 899999999999999999999999998887765
No 365
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.26 E-value=0.039 Score=56.24 Aligned_cols=70 Identities=27% Similarity=0.412 Sum_probs=52.3
Q ss_pred EEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCcc-----cc---ccccccCCCCccEEEECCCCCC
Q 010050 371 FVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAAR-----PF---EDILNFQPEKGAILANATPLGM 440 (519)
Q Consensus 371 vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~~-----~~---~~l~~~~~~~~divInat~~g~ 440 (519)
+.|||+|.+|.++++.|+..|. ++++++++.++++.++.++..... .+ .+.+ ...++|+||.|....-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~--~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA--DAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH--HhCCCCEEEEcCCCCC
Confidence 4699999999999999999895 799999999999998887642110 11 1111 3577999999887644
Q ss_pred CC
Q 010050 441 HP 442 (519)
Q Consensus 441 ~~ 442 (519)
.|
T Consensus 79 ~~ 80 (300)
T cd00300 79 KP 80 (300)
T ss_pred CC
Confidence 33
No 366
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.24 E-value=1.9 Score=48.06 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=135.3
Q ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCcchHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHH
Q 010050 17 LMAQSVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRL 88 (519)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~~~D~vElR----~D~---l~~~~~~~~l~~l~~~-~~~pii~T~R~~~eGG~~~~~~~~~~ 88 (519)
++-.+...+...+ .+.|.+.+|.- .|. +...++.+.++.+++. .+.++..-+|..+-=|..+..++...
T Consensus 18 ~~t~dkl~ia~~L---~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 18 MRTEDMLPIAEKL---DDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred CCHHHHHHHHHHH---HHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHH
Confidence 4444444444444 45699999994 552 2233456677777763 46888888897777777666666677
Q ss_pred HHHHHHHHhCCcEEEEeccccc--hHHHHhHhccCCCceEEEe-ecCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEccc
Q 010050 89 EALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVS-CNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSV 163 (519)
Q Consensus 89 ~ll~~~~~~~~~~vDiEl~~~~--~~~~~l~~~~~~~~kiI~S-~H~f~~tp--~~~~l~~~~~~~~~~gadi~Kia~~~ 163 (519)
+.++.+++.|++.+-|=....+ .....+...+..+..+.++ .+.+ +| +.+.+.++.+++.+.|||.+=|+=|.
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~ 172 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMA 172 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 7889999999988777644432 2323333344456666654 2233 55 66789999999999999998887666
Q ss_pred C--CHhHHHHHHHHhccC-CCCEEEE---ecCccchhhhhccCCCCCccccccCCC-CCCCCCCChHHHhhhhhc
Q 010050 164 N--DITEIARIFQLLSHC-QVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (519)
Q Consensus 164 ~--~~~D~~~l~~~~~~~-~~p~i~~---~MG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~~ 231 (519)
- ++.++.++.+.++.. +.|+ .+ +.--.+..+=+.+-.-|....-+++.. +...||++++++...++.
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~ 246 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPV-HLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG 246 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCce-EEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh
Confidence 3 688888888876543 4443 22 222334444444445565555555543 457999999998877653
No 367
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.036 Score=62.44 Aligned_cols=47 Identities=32% Similarity=0.569 Sum_probs=42.6
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.++.|+.++++++++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 415 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI 415 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 567899999987 69999999999999999999999999988887765
No 368
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.22 E-value=0.051 Score=53.40 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=42.2
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+.+|+++|+|+ ||.|++++..|.+.|++|+++.|+.++.+.+++++
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l 55 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 4567899999987 58999999999999999999999999888877655
No 369
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.22 E-value=0.039 Score=54.58 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=39.4
Q ss_pred CCCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCC---HHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDID---FERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt---~~ka~~La~~~ 411 (519)
.+++|.++|.|+ +|.|+++++.|.+.|++|++.+|+ .++.+++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~ 56 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL 56 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc
Confidence 367899999998 599999999999999999998765 45667777766
No 370
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=95.22 E-value=0.078 Score=56.22 Aligned_cols=117 Identities=23% Similarity=0.275 Sum_probs=68.7
Q ss_pred EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-----------------chhhHHHHHHHHhCCCeEEE
Q 010050 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI 396 (519)
Q Consensus 334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGa-----------------Ggaarai~~~L~~~G~~v~i 396 (519)
|---|..-++..+++.+. ..++.||+++|.|+ |++|++++.+|..+|++|++
T Consensus 165 gr~~~~~~I~~~~~~~~~-----------~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~ 233 (399)
T PRK05579 165 GRMAEPEEIVAAAERALS-----------PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL 233 (399)
T ss_pred CCCCCHHHHHHHHHHHhh-----------hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence 335566666666665553 13578999999987 56999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCCcccccc---cccc---CCCCccEEEECCCCCCCCCCCCCCCCcccccCC--cEEEEEecCCC
Q 010050 397 FDIDFERAKSLASDVMGAARPFED---ILNF---QPEKGAILANATPLGMHPNTDRVPVSEETLRDY--QLVFDAVYTPR 468 (519)
Q Consensus 397 ~nRt~~ka~~La~~~~~~~~~~~~---l~~~---~~~~~divInat~~g~~~~~~~~~l~~~~l~~~--~~v~Di~Y~P~ 468 (519)
+.|+.+ .+ ...+...+++.+ +.+. .....|++|++-.++... +.......+++. ...+++.-+|.
T Consensus 234 v~~~~~-~~---~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~---~~~~~~~Kikk~~~~~~l~L~~~pd 306 (399)
T PRK05579 234 VSGPVN-LP---TPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYR---PATVAEGKIKKGEGELTLELVPNPD 306 (399)
T ss_pred eCCCcc-cc---CCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEcccccccc---cccccccCccCCCCCceEEEEeCcH
Confidence 998752 11 000111112221 1110 235689999987654221 111122334442 35677776665
No 371
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.21 E-value=0.51 Score=47.88 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=59.0
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecC----------CCCCCC-cchHHHHHhcCCCcEEEEeccCCCCCCC
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC----------INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLY 80 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~----------l~~~~~-~~~l~~l~~~~~~pii~T~R~~~eGG~~ 80 (519)
.++++|.+.+.++....++.+.+.|+|.||+=+-+ ..+... .+.++.+++..+.|+.+-++..
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------ 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------ 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence 47789999999999888888888899999994322 221110 1234555555689999887632
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEEE
Q 010050 81 EGDEHKRLEALHLAEDLGADYVDF 104 (519)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~vDi 104 (519)
.++-.++.+.+.+.|+++|++
T Consensus 165 ---~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 165 ---VTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---chhHHHHHHHHHHcCCCEEEE
Confidence 224567777888899999876
No 372
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.044 Score=55.23 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=34.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK 405 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~ 405 (519)
+++.|||+|-||.+++..|+..|++|+++++++++.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence 4799999999999999999999999999999998874
No 373
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.19 E-value=0.051 Score=55.76 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=52.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCc-------ccc-ccccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPF-EDILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~-------~~~-~~l~~~~~~~~divInat~~ 438 (519)
.+|.|+|+|.+|.++++.|...|. ++.+++++.++++..+.++.... +.. .+.+ ...++|+||.|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG~ 81 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAGA 81 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCCC
Confidence 489999999999999999998885 79999999988888777664211 111 1222 25779999987655
Q ss_pred CCCC
Q 010050 439 GMHP 442 (519)
Q Consensus 439 g~~~ 442 (519)
.-.|
T Consensus 82 ~~k~ 85 (312)
T cd05293 82 RQNE 85 (312)
T ss_pred CCCC
Confidence 4333
No 374
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.19 E-value=0.051 Score=52.72 Aligned_cols=46 Identities=33% Similarity=0.499 Sum_probs=40.2
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+.+++++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++++++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~ 51 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEV 51 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45788999987 68999999999999999999999998887776655
No 375
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.18 E-value=0.047 Score=53.17 Aligned_cols=45 Identities=31% Similarity=0.571 Sum_probs=39.8
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++.+.+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence 5789999987 78999999999999999999999999888876554
No 376
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.18 E-value=0.045 Score=54.07 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=38.8
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEe-CCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~n-Rt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ +|.|++++..|.+.|++|+++. |+.++++++++++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 53 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDL 53 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 477899999988 6999999999999999988775 5677777666554
No 377
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.17 E-value=0.0044 Score=54.26 Aligned_cols=92 Identities=17% Similarity=0.095 Sum_probs=60.6
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCC
Q 010050 370 MFVLAG-AGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 370 ~vlvlG-aGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
||.|+| +|-+|+.++..|.+.-. -+.++.|+.+..+.+...++. ....+++.......++|+++.|+|.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 589999 68899999999998543 477788887676777776651 11223321111236789999999865432
Q ss_pred CCCCCCCCcccccCCcEEEEEecC
Q 010050 443 NTDRVPVSEETLRDYQLVFDAVYT 466 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di~Y~ 466 (519)
.+....++.+..|+|+...
T Consensus 81 -----~~~~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 81 -----ELAPKLLKAGIKVIDLSGD 99 (121)
T ss_dssp -----HHHHHHHHTTSEEEESSST
T ss_pred -----HHHHHHhhCCcEEEeCCHH
Confidence 1223446778899999754
No 378
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.047 Score=52.54 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=39.3
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|+|+ |+.|++++..|.+.|++|.+++|+.++..+..+++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV 51 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH
Confidence 56899999987 79999999999999999999999988766555443
No 379
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.15 E-value=0.71 Score=44.43 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=76.3
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~ll 91 (519)
+++.-+...+.+++...++.+.+.|+.++|+|++--. ..+.++.+++..+-++++=. |... + .+ -+
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---~~~~i~~l~~~~~~~~~iGa-----GTV~--~-~~---~~ 76 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD---PFDSIAALVKALGDRALIGA-----GTVL--S-PE---QV 76 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHcCCCcEEeE-----EecC--C-HH---HH
Confidence 4556688999999999999999999999999975332 23456777655544443211 1111 1 12 23
Q ss_pred HHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 010050 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (519)
Q Consensus 92 ~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Ki 159 (519)
+.+++.|++++=.--... +..+. .+..+..++.+.|+ | +| +.++.+.|+|++|+
T Consensus 77 ~~a~~aGA~fivsp~~~~-~v~~~---~~~~~~~~~~G~~t----~--~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 77 DRLADAGGRLIVTPNTDP-EVIRR---AVALGMVVMPGVAT----P--TE----AFAALRAGAQALKL 130 (206)
T ss_pred HHHHHcCCCEEECCCCCH-HHHHH---HHHCCCcEEcccCC----H--HH----HHHHHHcCCCEEEE
Confidence 567888998865433222 22222 22467788888775 2 23 45566789999997
No 380
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.11 E-value=0.036 Score=53.93 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEe
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFD 398 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~n 398 (519)
+++.+|+|+|.||.|..++-+|++-|+ ++++++
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID 61 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLID 61 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEe
Confidence 567899999999999999999999999 888754
No 381
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.11 E-value=0.053 Score=53.33 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=41.9
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i 56 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL 56 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 3467899999986 79999999999999999999999998887776654
No 382
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=95.10 E-value=0.069 Score=50.80 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCceEEEEccc-hhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC---Ccccccccc------cc---CCCCccEE
Q 010050 366 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AARPFEDIL------NF---QPEKGAIL 432 (519)
Q Consensus 366 ~~~k~vlvlGaG-gaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~---~~~~~~~l~------~~---~~~~~div 432 (519)
+.|-.+||.|.| |.|++.+..+.++|-+|.|++|+.++.++....... ...++.+.+ ++ .-.+-+++
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl 82 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL 82 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence 346789999776 999999999999999999999999988776555432 122332221 10 23456899
Q ss_pred EECCCC
Q 010050 433 ANATPL 438 (519)
Q Consensus 433 Inat~~ 438 (519)
||+-..
T Consensus 83 iNNAGI 88 (245)
T COG3967 83 INNAGI 88 (245)
T ss_pred eecccc
Confidence 997754
No 383
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.046 Score=52.87 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=50.1
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--ccc---ccccc---CCCCccEEEECCCC
Q 010050 370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFE---DILNF---QPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~~---~l~~~---~~~~~divInat~~ 438 (519)
+++|.|+ ||.|++++..|.+.|++|++++|+.++.++++++++...+ ++. ++.++ .....|++||+...
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~ 79 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAP 79 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCc
Confidence 5899987 7999999999999999999999999999888877643322 221 11110 01247999997653
No 384
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.046 Score=53.26 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=37.8
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 410 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~ 410 (519)
++++|.|+ ||.|++++..|.+.|++|.+++|+.++.++++..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 57899986 7999999999999999999999999998888764
No 385
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.08 E-value=0.055 Score=52.91 Aligned_cols=46 Identities=35% Similarity=0.559 Sum_probs=40.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++++++|.|+ |+.|++++..|.+.|++|.++.|+.++.+++..++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 35689999986 89999999999999999999999999888876655
No 386
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.08 E-value=0.052 Score=52.74 Aligned_cols=46 Identities=39% Similarity=0.547 Sum_probs=39.6
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+.+++++|+|+ |+.|++++..|.+.|++|+++.|+.++.++++..+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV 50 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46789999996 79999999999999999999999988776665554
No 387
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.048 Score=53.70 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=39.6
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
|+++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++++.++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 46 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG 46 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Confidence 57999987 789999999999999999999999999988877654
No 388
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.054 Score=52.79 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=38.7
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+|+++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++...+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 46 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL 46 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 578999986 79999999999999999999999999888776554
No 389
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.071 Score=51.35 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=47.9
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccccc---c----cCCCCccEEEECCCC
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFEDIL---N----FQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~--~~~~~l~---~----~~~~~~divInat~~ 438 (519)
++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.-+... .++.+.+ + +.....|+||++...
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 57899986 799999999999999999999999887766543211111 1222211 1 011357999998765
Q ss_pred C
Q 010050 439 G 439 (519)
Q Consensus 439 g 439 (519)
.
T Consensus 82 ~ 82 (225)
T PRK08177 82 S 82 (225)
T ss_pred c
Confidence 3
No 390
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.05 E-value=0.044 Score=49.49 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.7
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 010050 371 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS 409 (519)
Q Consensus 371 vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~ 409 (519)
++|+|+|.+|..+++.|++.|++|+++.|.. +++++.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~ 38 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE 38 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh
Confidence 6899999999999999999999999999999 8877654
No 391
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.049 Score=53.65 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=39.5
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP 47 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc
Confidence 368999986 799999999999999999999999999888877653
No 392
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.05 E-value=0.32 Score=48.26 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEE-EEeC----------CHHHHHH
Q 010050 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS 406 (519)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~-i~nR----------t~~ka~~ 406 (519)
-+.|...+++..+... +.+++|++++|-|.|.+|+.++..|.+.|++|+ |.+. +.+..+.
T Consensus 17 Tg~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~ 87 (254)
T cd05313 17 TGYGLVYFVEEMLKDR---------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAE 87 (254)
T ss_pred hHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHH
Confidence 4677778877766522 367899999999999999999999999999766 6552 2333322
Q ss_pred HHHH---hc------------CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcc---ccc--CCcEEEEEecC
Q 010050 407 LASD---VM------------GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVYT 466 (519)
Q Consensus 407 La~~---~~------------~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~---~l~--~~~~v~Di~Y~ 466 (519)
+.+. -+ ...++-+++ ...++||+|-|---+. +..+ .+. +..+++.-.-+
T Consensus 88 l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~---~~~~~DIliPcAl~~~--------I~~~na~~i~~~~ak~I~EgAN~ 156 (254)
T cd05313 88 LKEIKEVRRGRVSEYAKKYGTAKYFEGKKP---WEVPCDIAFPCATQNE--------VDAEDAKLLVKNGCKYVAEGANM 156 (254)
T ss_pred HHHHHHhcCCcHHHHhhcCCCCEEeCCcch---hcCCCcEEEecccccc--------CCHHHHHHHHHcCCEEEEeCCCC
Confidence 2111 11 111111121 2245899985542221 3322 342 45788888877
Q ss_pred CCcCH-HHHHHHHcCCceeccH
Q 010050 467 PRKTR-LLKDAEAAGAIIVSGV 487 (519)
Q Consensus 467 P~~T~-ll~~A~~~G~~~~~Gl 487 (519)
|- |+ --+.-+++|+.+++..
T Consensus 157 p~-t~~a~~~L~~rGI~vvPD~ 177 (254)
T cd05313 157 PC-TAEAIEVFRQAGVLFAPGK 177 (254)
T ss_pred CC-CHHHHHHHHHCCcEEECch
Confidence 85 54 2222345777766554
No 393
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.05 E-value=0.1 Score=56.16 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=29.3
Q ss_pred eEEEEccchhhHH-HHHHHHhCCCeEEEEeCCHH
Q 010050 370 MFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 370 ~vlvlGaGgaara-i~~~L~~~G~~v~i~nRt~~ 402 (519)
++.++|.||+|.+ ++..|.++|++|+++++...
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~ 34 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN 34 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc
Confidence 3789999999998 89999999999999997654
No 394
>PRK08303 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.049 Score=55.60 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=33.4
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~ 401 (519)
.+++|.++|.|+ +|.|++++.+|.+.|++|++++|+.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 467899999988 4999999999999999999999973
No 395
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.00 E-value=0.05 Score=52.90 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=47.3
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHhcCCcc--ccccccccCCCCccEEEECCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAAR--PFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~-ka~~La~~~~~~~~--~~~~l~~~~~~~~divInat~ 437 (519)
..+++++|||+|+|.+|..=+..|.+.|++|+|+..+.. ..+++++.-...+. .++. . .+..+++||-||.
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~--~-dl~g~~LViaATd 94 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK--E-FIKDKHLIVIATD 94 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh--H-HhCCCcEEEECCC
Confidence 456789999999999998888899999999999998763 34455442111111 1110 1 2345677887775
No 396
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.99 E-value=0.051 Score=54.38 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=37.5
Q ss_pred CceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+|.++|.|+||.|++++..|. .|++|+++.|+.++.+++.+++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l 44 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTL 44 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 467899999999999999996 7999999999998887776655
No 397
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=94.98 E-value=0.044 Score=55.99 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCCCCceEEEEcc---chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 010050 364 SPLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 410 (519)
Q Consensus 364 ~~~~~k~vlvlGa---Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~ 410 (519)
.+++||.++|.|+ .|.|++++..|++.|++|.+ .|+.++.++++..
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~ 53 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETS 53 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHh
Confidence 4588999999999 79999999999999999988 7877776666543
No 398
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.97 E-value=0.052 Score=53.30 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=39.2
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.++++++++|+|+ ||.|++++..|.+.|++|.++.|+.++. ++.+++
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~ 50 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEEL 50 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHH
Confidence 3578899999987 6899999999999999999999998766 444443
No 399
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.97 E-value=0.046 Score=55.81 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=35.0
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
.+|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+..
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 45 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKT 45 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhH
Confidence 3689999986 8999999999999999999998987665443
No 400
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.068 Score=54.58 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=37.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD 410 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~ 410 (519)
.+++|+|+|++|.-+++.|.+.|.+|+++.|..++.+++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~ 44 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA 44 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc
Confidence 479999999999999999999999999999998888777653
No 401
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.062 Score=53.53 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=38.5
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++.++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++.+..
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 47 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQA 47 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 578999987 79999999999999999999999998887776543
No 402
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=94.89 E-value=0.15 Score=51.37 Aligned_cols=162 Identities=14% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCccccCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCC----CCCCCcchHHHH-------HhcCCCcEEE
Q 010050 1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCI----NNFQPGKDLEII-------LTKKPLPVLI 69 (519)
Q Consensus 1 ~~~~~~~~~~~~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l----~~~~~~~~l~~l-------~~~~~~pii~ 69 (519)
||+.|+|+.+--=- =...+.++++.++++..+.|||+|.+=.-.- ...++.++++++ ++..+.|+
T Consensus 18 mGIlNvTpDSFsdg--g~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~I-- 93 (282)
T PRK11613 18 MGILNVTPDSFSDG--GTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWI-- 93 (282)
T ss_pred EEEEcCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--
Confidence 67777777652100 0013678899998888899999996632211 111223343332 22234443
Q ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE-EEeccccchHHHHhHhccCCCceEEEeecCCCCCCCH---------
Q 010050 70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE--------- 139 (519)
Q Consensus 70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~~v-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~--------- 139 (519)
.+=| .+.+.++.|++.|+++| ||--...++.+..+ .+.+..+|+-|. .++|..
T Consensus 94 SIDT------------~~~~va~~AL~~GadiINDI~g~~d~~~~~~~---a~~~~~vVlmh~--~g~p~~~~~~~~y~d 156 (282)
T PRK11613 94 SVDT------------SKPEVIRESAKAGAHIINDIRSLSEPGALEAA---AETGLPVCLMHM--QGNPKTMQEAPKYDD 156 (282)
T ss_pred EEEC------------CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHH---HHcCCCEEEEcC--CCCCCccccCCCccc
Confidence 3332 34467889999999998 77432233333322 234677888753 233321
Q ss_pred ------hHHHHHHHHHHHcCCCEEEEEcc-----cCCHhHHHHHHHHhcc---CCCCE
Q 010050 140 ------EDLGYLVSRMQATGADIIKLVFS-----VNDITEIARIFQLLSH---CQVPI 183 (519)
Q Consensus 140 ------~~l~~~~~~~~~~gadi~Kia~~-----~~~~~D~~~l~~~~~~---~~~p~ 183 (519)
+.+.+.++.+.+.|-+==+|..= .++.++++.+++-+.. .+.|+
T Consensus 157 v~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi 214 (282)
T PRK11613 157 VFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL 214 (282)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 23566677788887532366543 4688888888876543 35664
No 403
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=94.89 E-value=0.061 Score=55.00 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=40.4
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHhc
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G-~~v~i~nRt~~ka~~La~~~~ 412 (519)
+|+++|.|+ +|+|++++..|.+.| ++|++++|+.+++++++++++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~ 49 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG 49 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence 578999988 599999999999999 799999999999988887764
No 404
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.89 E-value=0.066 Score=51.68 Aligned_cols=46 Identities=41% Similarity=0.694 Sum_probs=40.1
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+++++|.|+ |+.|+.++..|.+.|++|.+++|+.++.+.+...+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAEL 49 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHH
Confidence 34688999987 79999999999999999999999998877776654
No 405
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.063 Score=52.68 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=40.1
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhc
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM 412 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~ 412 (519)
+|+++|.|+ |+.|++++..|.+.|++|++++|+.++++.+++.+.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~ 47 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG 47 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence 468999998 799999999999999999999999999888887653
No 406
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.87 E-value=0.05 Score=54.75 Aligned_cols=122 Identities=8% Similarity=-0.037 Sum_probs=69.1
Q ss_pred eEEEEccchhhHHHHHHHHhCC----CeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT 444 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G----~~v~i~nRt~-~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~ 444 (519)
++.|||+|-+|.+++..|.+.| .+|++++|+. ++++.+...++.... ..+..+ ...++|+||-|+|.......
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e-~~~~aDvVilavpp~~~~~v 80 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL-ADNEAE-IFTKCDHSFICVPPLAVLPL 80 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE-eCCHHH-HHhhCCEEEEecCHHHHHHH
Confidence 5899999999999999999888 4799999864 556666655432111 122222 23568999999985432110
Q ss_pred CCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHc-CC-ceeccHHHHHHHHHH
Q 010050 445 DRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA-GA-IIVSGVEMFLRQAIG 496 (519)
Q Consensus 445 ~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~-G~-~~~~Gl~mli~Qa~~ 496 (519)
- ..+ ...+.++..++.+.-. -...-++..-.. .+ ++++-....+.++.-
T Consensus 81 l-~~l-~~~l~~~~~ivS~~aG-i~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t 131 (277)
T PRK06928 81 L-KDC-APVLTPDRHVVSIAAG-VSLDDLLEITPGLQVSRLIPSLTSAVGVGTS 131 (277)
T ss_pred H-HHH-HhhcCCCCEEEEECCC-CCHHHHHHHcCCCCEEEEeCccHHHHhhhcE
Confidence 0 000 0123445555555422 222233333211 22 467777777766643
No 407
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.85 E-value=0.21 Score=56.84 Aligned_cols=182 Identities=21% Similarity=0.262 Sum_probs=102.7
Q ss_pred CCCceEEecccCCHHHHHHhc--CCCCCCEEEe---ccCchHHHHhhhhccCHHHhhccceeEEEEecCCCeEEEeecc-
Q 010050 265 NYNGIYVPMFVDDLKKFFSTY--SSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTD- 338 (519)
Q Consensus 265 gl~~~Y~~~~~~~~~~~~~~l--~~~~~~G~~V---T~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD- 338 (519)
|+|..=+.++.+|.++|++.. ..|.|+|+|. ..|+=..+++-+. + ..|.-++.+ | .+|+-.=
T Consensus 101 gid~~~i~~~~~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~---~------~~~ip~f~D-D--~~GTa~v~ 168 (752)
T PRK07232 101 GIDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLR---E------RMDIPVFHD-D--QHGTAIIS 168 (752)
T ss_pred CCCccccccCCCCHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHH---H------hcCCCeecc-c--cchHHHHH
Confidence 366332223335777777766 3588999985 3454444433321 1 123333441 2 3443221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC---eEEEEeCC----HHH------H-
Q 010050 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FER------A- 404 (519)
Q Consensus 339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~---~v~i~nRt----~~k------a- 404 (519)
..|++++++- .+..+++.++++.|||.+|-+++..|...|. +|+++++. .+| .
T Consensus 169 lA~l~na~~~-------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k 235 (752)
T PRK07232 169 AAALLNALEL-------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWK 235 (752)
T ss_pred HHHHHHHHHH-------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHH
Confidence 2334455432 1356788899999999999999999999998 79988863 111 1
Q ss_pred HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCCcccc---cCCcEEEEEec-CCCcCHHHHHHHHc-
Q 010050 405 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVY-TPRKTRLLKDAEAA- 479 (519)
Q Consensus 405 ~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~~~l~~~~l---~~~~~v~Di~Y-~P~~T~ll~~A~~~- 479 (519)
+.+|+. .....|.+ ..+.+|++|-++..|. |.++++ .+..++|=+.- .|+-|| ++|.+.
T Consensus 236 ~~~a~~-----~~~~~l~~-~i~~~~v~iG~s~~g~--------~~~~~v~~M~~~piifalsNP~~E~~p--~~a~~~~ 299 (752)
T PRK07232 236 AAYAVD-----TDARTLAE-AIEGADVFLGLSAAGV--------LTPEMVKSMADNPIIFALANPDPEITP--EEAKAVR 299 (752)
T ss_pred HHHhcc-----CCCCCHHH-HHcCCCEEEEcCCCCC--------CCHHHHHHhccCCEEEecCCCCccCCH--HHHHHhc
Confidence 123332 12234444 4566899997765332 455554 35778888762 133365 555554
Q ss_pred -CCceeccH
Q 010050 480 -GAIIVSGV 487 (519)
Q Consensus 480 -G~~~~~Gl 487 (519)
|+-+..|.
T Consensus 300 ~~~i~atGr 308 (752)
T PRK07232 300 PDAIIATGR 308 (752)
T ss_pred CCEEEEECC
Confidence 34455553
No 408
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.82 E-value=0.2 Score=53.61 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEE-Ee
Q 010050 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI-FD 398 (519)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i-~n 398 (519)
--+.|...+++..+++. +.+++|++|+|-|.|.+|..++..|.+.|++|+. .+
T Consensus 206 aTg~Gv~~~~~~~~~~~---------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 206 ATGYGNIYFLMEMLKTK---------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred ccHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 34678888887766522 3579999999999999999999999999998775 44
No 409
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.81 E-value=0.021 Score=60.62 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH-----HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 010050 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-----ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 365 ~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~-----~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g 439 (519)
.+++|+|+|||.|-.|++-+..|...|++|+|--|.. ++..+.|..-|... .++.+ ..+++|+|++.+|-.
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v---~~~~E-a~~~ADvVviLlPDt 108 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV---GTYEE-LIPQADLVINLTPDK 108 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc---CCHHH-HHHhCCEEEEcCChH
Confidence 4678999999999999999999999999999888764 23334443333332 33444 457799999999864
No 410
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.056 Score=53.36 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=37.7
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCC-CeEEEEeCCHHH-HHHHHHHh
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFER-AKSLASDV 411 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G-~~v~i~nRt~~k-a~~La~~~ 411 (519)
.+++++|.|+ ||.|++++..|.+.| ++|+++.|+.++ .+++++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l 54 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQM 54 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHH
Confidence 3578999988 699999999999986 799999999886 66666655
No 411
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.79 E-value=0.55 Score=50.30 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEE-EEeCC
Q 010050 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID 400 (519)
Q Consensus 337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~-i~nRt 400 (519)
-.+.|.+..++..+... +.+++|++|+|=|.|.+|..++..|.++|++|+ |.+.+
T Consensus 215 ATG~Gv~~~~~~~l~~~---------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL---------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred ccHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 35778888887766522 367899999999999999999999999999766 77776
No 412
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.78 E-value=0.082 Score=54.41 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCC--------ccc-cccccccCCCCccEEEECC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA--------ARP-FEDILNFQPEKGAILANAT 436 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~--------~~~-~~~l~~~~~~~~divInat 436 (519)
+.+++.|+|+|.+|.++++.+...|. +|.+++++.++++..+-++... .+. ..+.+ ...++|+||.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~--~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE--DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH--HhCCCCEEEECC
Confidence 45789999999999999999999895 9999999988766544333210 011 12222 347899999987
Q ss_pred CCCCCC
Q 010050 437 PLGMHP 442 (519)
Q Consensus 437 ~~g~~~ 442 (519)
..+-.|
T Consensus 82 g~~~~~ 87 (319)
T PTZ00117 82 GVQRKE 87 (319)
T ss_pred CCCCCC
Confidence 654433
No 413
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.77 E-value=0.98 Score=44.09 Aligned_cols=138 Identities=18% Similarity=0.212 Sum_probs=85.3
Q ss_pred EEeccc--CCHHHHHHHHHHHHhcCCCEE--EEEecCCCCCCCcchHHHHH---hcCCCcEEEEeccCCCCCCCC--CCH
Q 010050 14 CAPLMA--QSVEQVLSNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDE 84 (519)
Q Consensus 14 cv~l~~--~~~~~~~~~~~~~~~~~~D~v--ElR~D~l~~~~~~~~l~~l~---~~~~~pii~T~R~~~eGG~~~--~~~ 84 (519)
|+++.+ .+......+++++...|+|.+ .+|.-.+......+.+.+++ +..++|+|+..+.. |-... .++
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~--g~~~~~~~~~ 142 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPR--GPAVKNEKDP 142 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEecc--CCcccCccCH
Confidence 455654 666777778999999999988 77755433111112334444 34689999976542 33221 233
Q ss_pred HHHHHHHHHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 010050 85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (519)
Q Consensus 85 ~~~~~ll~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~ 157 (519)
++.....+.+.+.|+|||=+-.....+.++++... ....+++|=.. +..+.++..+.++++.+.||+-+
T Consensus 143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence 44444466788999999998644434556666532 23456666321 22356678888899999999855
No 414
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.77 E-value=0.068 Score=52.52 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=38.4
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+|+++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++++.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 46 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI 46 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 468999988 58999999999999999999999988887776654
No 415
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.067 Score=52.06 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=38.0
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDL 45 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 57999986 79999999999999999999999999887776654
No 416
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.76 E-value=0.25 Score=52.79 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCCeEEE
Q 010050 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396 (519)
Q Consensus 338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i 396 (519)
-+.|.+.+++..+... +.+++|++|+|=|.|.+|..++..|.+.|++|+.
T Consensus 207 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 207 TGFGALYFVHQMLETK---------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred cHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 4678888877766522 3578999999999999999999999999998776
No 417
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.75 E-value=0.063 Score=54.89 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=52.6
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH-hcCCccc----------cccccccCCCCccEEEECCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD-VMGAARP----------FEDILNFQPEKGAILANATP 437 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~-~~~~~~~----------~~~l~~~~~~~~divInat~ 437 (519)
++|.|||+|.-|.|++..|++.|.+|.+|.|+++-.+++-+. -+..+.+ ..|+.+ ...++|+|+-++|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~-a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAE-ALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHH-HHhcCCEEEEECC
Confidence 479999999999999999999999999999999998887654 2222211 123333 3456899988888
Q ss_pred CC
Q 010050 438 LG 439 (519)
Q Consensus 438 ~g 439 (519)
..
T Consensus 81 s~ 82 (329)
T COG0240 81 SQ 82 (329)
T ss_pred hH
Confidence 63
No 418
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.73 E-value=0.073 Score=51.57 Aligned_cols=46 Identities=43% Similarity=0.663 Sum_probs=40.0
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEE-eCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~-nRt~~ka~~La~~~ 411 (519)
+.+++++|+|+ |+.|+.++..|.+.|++|+++ .|+.++.+.+...+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 50 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI 50 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 56789999987 899999999999999998888 99988887776654
No 419
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.73 E-value=0.13 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCC-ceEEEEccchhhHHHHHHHHhC--CCeEEEEeCCH
Q 010050 366 LAG-RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF 401 (519)
Q Consensus 366 ~~~-k~vlvlGaGgaarai~~~L~~~--G~~v~i~nRt~ 401 (519)
+.+ ++++|+|.|+.|++++..|.+. |++|++++...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 345 7899999999999999999987 57899999754
No 420
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.69 E-value=0.16 Score=54.49 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=32.1
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCH
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~ 401 (519)
+.+++++|+|-|+.|++++..|.+.|++|++++...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 457899999999999999999999999999999753
No 421
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.69 E-value=0.068 Score=52.65 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=37.7
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 370 ~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6899987 59999999999999999999999999888777665
No 422
>PRK08017 oxidoreductase; Provisional
Probab=94.69 E-value=0.063 Score=52.52 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=36.1
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLA 408 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La 408 (519)
++++|+|+ |+.|++++..|.+.|++|.++.|+.++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 57999998 99999999999999999999999998876654
No 423
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.66 E-value=0.28 Score=49.23 Aligned_cols=95 Identities=24% Similarity=0.356 Sum_probs=57.3
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhC----CC-------eEEEEeCCH----------HHHHHHHHHhcCCccccccc
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDIDF----------ERAKSLASDVMGAARPFEDI 421 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~----G~-------~v~i~nRt~----------~ka~~La~~~~~~~~~~~~l 421 (519)
+.++.+.+++|+|||.+|-+++..|... |. +|++++|.- +.-+.+++..+. ....+|
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~--~~~~~L 97 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE--KEGKSL 97 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc--ccCCCH
Confidence 3568889999999998888888777665 76 799988751 111233433211 011233
Q ss_pred cccCCC--CccEEEECCCCCCCCCCCCCCCCccccc------CCcEEEEEecCCC
Q 010050 422 LNFQPE--KGAILANATPLGMHPNTDRVPVSEETLR------DYQLVFDAVYTPR 468 (519)
Q Consensus 422 ~~~~~~--~~divInat~~g~~~~~~~~~l~~~~l~------~~~~v~Di~Y~P~ 468 (519)
.+ .++ ++|++|-+|..+- .|.+++++ +..++|=++ ||-
T Consensus 98 ~e-~i~~v~ptvlIG~S~~~g-------~ft~evv~~Ma~~~~~PIIFaLS-NPt 143 (279)
T cd05312 98 LE-VVKAVKPTVLIGLSGVGG-------AFTEEVVRAMAKSNERPIIFALS-NPT 143 (279)
T ss_pred HH-HHHhcCCCEEEEeCCCCC-------CCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence 33 233 6899998775321 14444432 467888776 553
No 424
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.63 E-value=1.1 Score=42.46 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=70.0
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~ll 91 (519)
.++.-+...+.+++...++.+.+.|++++|+|..--. ..+.++.+++..+- +.+. +|..- +. + -+
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~-~~iG------ag~v~-~~-~---~~ 69 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPE-ALIG------AGTVL-TP-E---QA 69 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCC-CEEE------EEeCC-CH-H---HH
Confidence 4556688999999999999999999999999976322 23455666554431 2222 12211 11 2 23
Q ss_pred HHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 010050 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (519)
Q Consensus 92 ~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Ki 159 (519)
..++..|++++=.--. ..+..+. .+..+.++|.-.. | .+| ..++.+.|||++|+
T Consensus 70 ~~a~~~Ga~~i~~p~~-~~~~~~~---~~~~~~~~i~gv~----t--~~e----~~~A~~~Gad~i~~ 123 (190)
T cd00452 70 DAAIAAGAQFIVSPGL-DPEVVKA---ANRAGIPLLPGVA----T--PTE----IMQALELGADIVKL 123 (190)
T ss_pred HHHHHcCCCEEEcCCC-CHHHHHH---HHHcCCcEECCcC----C--HHH----HHHHHHCCCCEEEE
Confidence 5567789998832211 1222221 2234567776443 2 233 34555789999998
No 425
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.62 E-value=0.19 Score=49.63 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCCCCCceEEEEccchhhHHHHHHHHhCCC-----------eEEEEeCC
Q 010050 363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGA-----------RVVIFDID 400 (519)
Q Consensus 363 ~~~~~~k~vlvlGaGgaarai~~~L~~~G~-----------~v~i~nRt 400 (519)
+.++++.+++++|||.+|-+++..|...+. +|++++|.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 356888999999999988888888776543 68888764
No 426
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.62 E-value=0.076 Score=51.96 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=50.8
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEEC
Q 010050 370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILANA 435 (519)
Q Consensus 370 ~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~divIna 435 (519)
+++|+|+ ||.|++++..|.+.|++|.++.|+.++++.+...++... .++.+ +.++ .....|++|++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 6899987 789999999999999999999999999988877664321 12211 1110 12357999998
Q ss_pred CCCC
Q 010050 436 TPLG 439 (519)
Q Consensus 436 t~~g 439 (519)
....
T Consensus 82 ag~~ 85 (248)
T PRK10538 82 AGLA 85 (248)
T ss_pred CCcc
Confidence 7653
No 427
>PRK14851 hypothetical protein; Provisional
Probab=94.62 E-value=0.051 Score=61.32 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.7
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCC-eEEEEeC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nR 399 (519)
+++++|+|+|+||.|..++..|+..|+ +++|++.
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 457899999999999999999999999 8998664
No 428
>PRK06114 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.086 Score=51.78 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=39.0
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~-ka~~La~~~ 411 (519)
.++++|.++|.|+ ||.|++++..|.+.|++|.+..|+.+ ..+++++++
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l 53 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI 53 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 3577899999987 59999999999999999999999754 445555544
No 429
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.59 E-value=0.1 Score=51.27 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHhcCCcc--ccc---ccccc------CCCCccE
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAAR--PFE---DILNF------QPEKGAI 431 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nR-t~~ka~~La~~~~~~~~--~~~---~l~~~------~~~~~di 431 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.+..| +.+.++++... +...+ ++. ++..+ .....|+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK-GVFTIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 356899999987 79999999999999998877655 44555555432 22111 111 11110 1235799
Q ss_pred EEECCCC
Q 010050 432 LANATPL 438 (519)
Q Consensus 432 vInat~~ 438 (519)
|||+...
T Consensus 83 li~~ag~ 89 (255)
T PRK06463 83 LVNNAGI 89 (255)
T ss_pred EEECCCc
Confidence 9998765
No 430
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.57 E-value=0.16 Score=54.27 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=29.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
+++|+|.||.|++++..|.+.|++|+++++...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 478999999999999999999999999997543
No 431
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=94.57 E-value=0.081 Score=51.99 Aligned_cols=46 Identities=37% Similarity=0.615 Sum_probs=37.7
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.. .+++++++
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~ 51 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAEL 51 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHH
Confidence 367899999988 69999999999999999999999853 34454444
No 432
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.56 E-value=0.1 Score=54.19 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=51.2
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcC----Cc--ccccc---ccccCCCCccEEEEC
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AA--RPFED---ILNFQPEKGAILANA 435 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~----~~--~~~~~---l~~~~~~~~divIna 435 (519)
.+++++||.|+ |..|+.++..|.+.|++|+++.|+.++++.+...+.. .. .++.+ +.+ ...+.|.||++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih~ 86 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDE-AVKGCDGVFHV 86 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHH-HHcCCCEEEEC
Confidence 46789999986 7899999999999999999999998887776555421 11 12211 112 23457999998
Q ss_pred CCC
Q 010050 436 TPL 438 (519)
Q Consensus 436 t~~ 438 (519)
...
T Consensus 87 A~~ 89 (353)
T PLN02896 87 AAS 89 (353)
T ss_pred Ccc
Confidence 754
No 433
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.56 E-value=0.084 Score=51.66 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=36.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
++++|+++|.|+ |+.|++++..|.+.|++|.++.|+.+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~ 52 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA 52 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 467899999997 7999999999999999999999997753
No 434
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.55 E-value=0.081 Score=54.13 Aligned_cols=72 Identities=25% Similarity=0.276 Sum_probs=52.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCC-c------ccc--ccccccCCCCccEEEECCCC
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA-A------RPF--EDILNFQPEKGAILANATPL 438 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~-~------~~~--~~l~~~~~~~~divInat~~ 438 (519)
++.|||+|.+|.++|+.|...|. ++.+++++.++++..+.++... . +.+ .+.+ ..+++|+||-|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~--~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYD--DCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHH--HhCCCCEEEECCCC
Confidence 47899999999999999998886 7999999998888877766431 1 111 1212 35789999987766
Q ss_pred CCCCC
Q 010050 439 GMHPN 443 (519)
Q Consensus 439 g~~~~ 443 (519)
.-.|.
T Consensus 79 ~~kpg 83 (307)
T cd05290 79 SIDPG 83 (307)
T ss_pred CCCCC
Confidence 44443
No 435
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.55 E-value=3.6 Score=38.29 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcC---CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 010050 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK---PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL 97 (519)
Q Consensus 21 ~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~---~~pii~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (519)
|.+.+...++.+.+.|+|.+++-- +.++.+++.. +.|+++.+-... +. ..-++-.+..+.+.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence 667777777777788999998843 3444444432 478886654321 11 2246777888999999
Q ss_pred CCcEEEEecccc-------c---hHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEcccC---
Q 010050 98 GADYVDFELKVA-------S---NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--- 164 (519)
Q Consensus 98 ~~~~vDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~--- 164 (519)
|++.+.+-.... + ++++++...-+.+..+++ |+....+.+.+++.+..+.+...|+|.+|......
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~i-y~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~ 156 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKV-ILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG 156 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEE-EEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 999999864432 1 333444422112445444 44333333456677777777788999999876422
Q ss_pred -CHhHHHHHHHHhccCCCCEEEE
Q 010050 165 -DITEIARIFQLLSHCQVPIIAY 186 (519)
Q Consensus 165 -~~~D~~~l~~~~~~~~~p~i~~ 186 (519)
+.+.+..+.+.... +.|++..
T Consensus 157 ~~~~~~~~i~~~~~~-~~~v~~~ 178 (201)
T cd00945 157 ATVEDVKLMKEAVGG-RVGVKAA 178 (201)
T ss_pred CCHHHHHHHHHhccc-CCcEEEE
Confidence 55665555544321 3455444
No 436
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.53 E-value=0.041 Score=49.00 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=31.5
Q ss_pred CceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHH
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERA 404 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka 404 (519)
+++|+|+|+|+.|..++..|+..|+ +++|++.+.=..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 4789999999999999999999999 999999764433
No 437
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.49 E-value=0.066 Score=54.72 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=47.6
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--ccc---cccccCCCCccEEEECCC
Q 010050 370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFE---DILNFQPEKGAILANATP 437 (519)
Q Consensus 370 ~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~~---~l~~~~~~~~divInat~ 437 (519)
+++|+|| |..|+.++.+|.+.|++|+++.|+.+++..+.. .+.+.+ ++. .+.. ...++|.||++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~-al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPP-SFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHH-HHCCCCEEEECCC
Confidence 6899996 889999999999999999999999877655432 232221 222 2222 3467899999865
No 438
>PRK05599 hypothetical protein; Provisional
Probab=94.45 E-value=0.075 Score=52.13 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=36.9
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+.++|.|+ +|.|++++..|. .|++|+++.|+.++++++++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l 43 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDL 43 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 35889988 489999999998 4999999999999999988766
No 439
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.092 Score=51.13 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=37.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCH-HHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~-~ka~~La~~~ 411 (519)
+++++++|.|+ ||.|++++..|.+.|++|+++.|+. ++.+.++.++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l 51 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEI 51 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHH
Confidence 56789999997 8999999999999999999999975 3455555444
No 440
>PRK07791 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.084 Score=53.15 Aligned_cols=46 Identities=41% Similarity=0.734 Sum_probs=39.2
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCH---------HHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF---------ERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~---------~ka~~La~~~ 411 (519)
+++|.++|.|+ +|.|++++..|.+.|++|+++.|+. ++.+++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l 59 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEI 59 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHH
Confidence 56899999988 5999999999999999999988876 6777777665
No 441
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.42 E-value=0.089 Score=54.35 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=55.8
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccc---------------cccccccCCCCccEEE
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP---------------FEDILNFQPEKGAILA 433 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~---------------~~~l~~~~~~~~divI 433 (519)
.++.|||+|.+|.+++..|.+.|++|++++|+.. .+.+.+ .+....+ ..+. + ....+|+||
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-A-ALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccCh-h-hccCCCEEE
Confidence 4699999999999999999999999999999753 344433 2211100 0111 1 245789999
Q ss_pred ECCCCCCCCCCCCCC-CCcccccCCcEEEEEecC
Q 010050 434 NATPLGMHPNTDRVP-VSEETLRDYQLVFDAVYT 466 (519)
Q Consensus 434 nat~~g~~~~~~~~~-l~~~~l~~~~~v~Di~Y~ 466 (519)
-|++...... ... + ...+.++.+++++...
T Consensus 79 l~vk~~~~~~--~~~~l-~~~~~~~~iii~~~nG 109 (341)
T PRK08229 79 VTVKSAATAD--AAAAL-AGHARPGAVVVSFQNG 109 (341)
T ss_pred EEecCcchHH--HHHHH-HhhCCCCCEEEEeCCC
Confidence 9887532111 000 0 1124556677777543
No 442
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.089 Score=52.31 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=37.5
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++|+|+ ||.|++++..|++.|++|.+++|+.++.+++++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~ 44 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA 44 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899987 69999999999999999999999998887776654
No 443
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.38 E-value=0.083 Score=54.09 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=32.2
Q ss_pred CceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
..+++|+|+|.+|..++..|++.|++|+++.|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 35899999999999999999999999999999864
No 444
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.38 E-value=0.093 Score=51.50 Aligned_cols=46 Identities=30% Similarity=0.515 Sum_probs=39.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~-v~i~nRt~~ka~~La~~~ 411 (519)
+++|+++|.|+ |+.|+.++..|.+.|++ |++++|+.++.+.+.+++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l 51 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL 51 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH
Confidence 56789999998 69999999999999996 999999988777666554
No 445
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.37 E-value=0.11 Score=51.21 Aligned_cols=47 Identities=34% Similarity=0.487 Sum_probs=37.9
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCC-HHHHHHHHHHh
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV 411 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt-~~ka~~La~~~ 411 (519)
++++|+++|+|+ ||.|++++..|.+.|++|.+..|+ .+..+.+.+++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l 52 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEI 52 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 477899999987 589999999999999988888884 45555555544
No 446
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.33 E-value=0.56 Score=49.33 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=79.3
Q ss_pred eccCCCcccCCHHHHHHHHHH-cCCCceEEecccC---CHHHHHHhcCCCCCCEEEe---ccCchHHHHhhhhccCHHHh
Q 010050 243 LISKPVGHSKGPILHNPTFRH-VNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQ 315 (519)
Q Consensus 243 liG~pi~hS~SP~~hn~~f~~-~gl~~~Y~~~~~~---~~~~~~~~l~~~~~~G~~V---T~P~K~~v~~~~d~~~~~A~ 315 (519)
+-|-||.--+. .+|++ -|+|..=+.+++. ++.++++.+ .+.|.|+|+ -.|-+..+-..+.+.
T Consensus 97 ~ag~pVmeGKa-----~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~----- 165 (432)
T COG0281 97 LAGKPVMEGKA-----VLFKAFAGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR----- 165 (432)
T ss_pred ccCcchhhhHH-----HHHHHhcCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc-----
Confidence 44566666554 23433 4688554445553 466677666 467999996 456666665544331
Q ss_pred hccceeEEEEecCCCeEEEeecc-HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhhHHHHHHHHhCCC--
Q 010050 316 AIAAVNTIIRRPSDGKLIGYNTD-CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-- 392 (519)
Q Consensus 316 ~iGavNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlvlGaGgaarai~~~L~~~G~-- 392 (519)
.|.=++.+ | .+|+-.= ..|++++|+- .+..++..++++.|||.+|-+++..|...|+
T Consensus 166 ----~~IPvFhD-D--qqGTaiv~lA~llnalk~-------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~ 225 (432)
T COG0281 166 ----MNIPVFHD-D--QQGTAIVTLAALLNALKL-------------TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKE 225 (432)
T ss_pred ----CCCCcccc-c--ccHHHHHHHHHHHHHHHH-------------hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCc
Confidence 23323331 2 3332221 1234455432 2467888999999999999999999999997
Q ss_pred -eEEEEeCC
Q 010050 393 -RVVIFDID 400 (519)
Q Consensus 393 -~v~i~nRt 400 (519)
+|++++|.
T Consensus 226 ~~i~~~D~~ 234 (432)
T COG0281 226 ENIFVVDRK 234 (432)
T ss_pred ccEEEEecC
Confidence 69999985
No 447
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.33 E-value=0.61 Score=44.15 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=67.4
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 010050 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (519)
Q Consensus 12 ~icv~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~ll 91 (519)
+++.-+...+.+++...++.+...|+.++|+|..-... .+.++.+++.. |.+. . .+|.. ... ++ +
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~~-~----g~gtv-l~~-d~---~ 77 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PECI-I----GTGTI-LTL-ED---L 77 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCcE-E----eEEEE-EcH-HH---H
Confidence 46667899999999999999999999999999765442 23344444322 3210 0 01111 111 33 3
Q ss_pred HHHHHhCCcEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 010050 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (519)
Q Consensus 92 ~~~~~~~~~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Ki 159 (519)
+.|++.|+++|=+--...+ ..+ .... ++.-.+++ .|+ | +| +.++.+.|||++|+
T Consensus 78 ~~A~~~gAdgv~~p~~~~~-~~~-~~~~-~~~~~i~G-~~t----~--~e----~~~A~~~Gadyv~~ 131 (187)
T PRK07455 78 EEAIAAGAQFCFTPHVDPE-LIE-AAVA-QDIPIIPG-ALT----P--TE----IVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHcCCCEEECCCCCHH-HHH-HHHH-cCCCEEcC-cCC----H--HH----HHHHHHCCCCEEEE
Confidence 4677889999822221111 111 1111 22234455 553 3 22 45555789999999
No 448
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.32 E-value=0.074 Score=53.05 Aligned_cols=71 Identities=30% Similarity=0.484 Sum_probs=51.3
Q ss_pred EEEEcc-chhhHHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHhcCCc-----ccc---ccccccCCCCccEEEECCC
Q 010050 371 FVLAGA-GGAGRALAFGAKSRG----ARVVIFDIDFERAKSLASDVMGAA-----RPF---EDILNFQPEKGAILANATP 437 (519)
Q Consensus 371 vlvlGa-Ggaarai~~~L~~~G----~~v~i~nRt~~ka~~La~~~~~~~-----~~~---~~l~~~~~~~~divInat~ 437 (519)
+.|+|+ |.+|..+++.|...| .+|++++++.++++..+.++.... ..+ .++.+ ...++|+||.+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~-~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYE-AFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHH-HhCCCCEEEECCC
Confidence 469999 889999999999888 489999999988887766653211 111 12222 4578999999887
Q ss_pred CCCCC
Q 010050 438 LGMHP 442 (519)
Q Consensus 438 ~g~~~ 442 (519)
.+-.|
T Consensus 80 ~~~~~ 84 (263)
T cd00650 80 VGRKP 84 (263)
T ss_pred CCCCc
Confidence 76544
No 449
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.32 E-value=0.11 Score=52.83 Aligned_cols=48 Identities=35% Similarity=0.561 Sum_probs=39.9
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCC-HHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt-~~ka~~La~~~ 411 (519)
..+++|+++|.|+ ||.|++++..|.+.|++|.+.+|. .++++++++++
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i 57 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEI 57 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHH
Confidence 5688999999988 589999999999999999988874 45666666654
No 450
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.32 E-value=0.2 Score=58.20 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=56.9
Q ss_pred ceEEEEccchhhHHH-HHHHHhCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 010050 369 RMFVLAGAGGAGRAL-AFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR 446 (519)
Q Consensus 369 k~vlvlGaGgaarai-~~~L~~~G~~v~i~nRt~~k-a~~La~~~~~~~~~~~~l~~~~~~~~divInat~~g~~~~~~~ 446 (519)
++++|+|.||+|+++ |..|.++|++|++.+.+... .++|. ..|.... .....+ ...++|+||
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~-~~gi~~~-~g~~~~-~~~~~d~vV------------- 68 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLK-AKGARFF-LGHQEE-HVPEDAVVV------------- 68 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHH-HCCCEEe-CCCCHH-HcCCCCEEE-------------
Confidence 469999999999999 99999999999999975432 22221 1111110 000000 011233333
Q ss_pred CCCCcccccCCcEEEEEecC---CCcCHHHHHHHHcCCceeccHHHHHH
Q 010050 447 VPVSEETLRDYQLVFDAVYT---PRKTRLLKDAEAAGAIIVSGVEMFLR 492 (519)
Q Consensus 447 ~~l~~~~l~~~~~v~Di~Y~---P~~T~ll~~A~~~G~~~~~Gl~mli~ 492 (519)
++ |...|.+++|+++|+++++-.+++-.
T Consensus 69 ------------------~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~ 99 (809)
T PRK14573 69 ------------------YSSSISKDNVEYLSAKSRGNRLVHRAELLAE 99 (809)
T ss_pred ------------------ECCCcCCCCHHHHHHHHCCCcEEeHHHHHHH
Confidence 33 23568889999999999999998643
No 451
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.29 E-value=0.092 Score=53.59 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHH
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSL 407 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~L 407 (519)
.|++++|.|+ |..|+.++..|.+.|++|+++.|+.++++.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 45 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKT 45 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHH
Confidence 4789999986 8999999999999999999888987665443
No 452
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.28 E-value=0.13 Score=52.52 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=51.3
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCC------cccc---ccccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA------ARPF---EDILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~------~~~~---~~l~~~~~~~~divInat~~ 438 (519)
+++.|+|+|-+|..+++.++..|. +|++++++.++++..+.++... ...+ .+.+ ...++|+||.|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~--~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE--DIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH--HHCCCCEEEECCCC
Confidence 579999999999999999998876 9999999988877655433211 0011 1222 35679999998766
Q ss_pred CCCC
Q 010050 439 GMHP 442 (519)
Q Consensus 439 g~~~ 442 (519)
+..+
T Consensus 81 p~~~ 84 (307)
T PRK06223 81 PRKP 84 (307)
T ss_pred CCCc
Confidence 5444
No 453
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.1 Score=51.35 Aligned_cols=43 Identities=35% Similarity=0.542 Sum_probs=38.1
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++|+|+ |+.|++++..|.+.|++|.+++|+.++.+++.+.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL 45 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 57999988 79999999999999999999999998887776654
No 454
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.24 E-value=4.2 Score=40.14 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-chHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHH
Q 010050 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHL 93 (519)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~D~vElR~D~l~-~~~~~-~~l~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~l---l~~ 93 (519)
..+++++ ..|.+.|||-|||.-++-. .+.|. ..++.+++..++|+.+-+|+. ||-|-.+++|...+ ++.
T Consensus 8 v~s~~~a----~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 8 CYSMECA----LTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred ECCHHHH----HHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence 4554444 4556789999999988754 34442 245666666799999999986 45666666555433 556
Q ss_pred HHHhCCcEEEE-----eccccchHHHHhHhccCCCceEEEeecC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCHh
Q 010050 94 AEDLGADYVDF-----ELKVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT 167 (519)
Q Consensus 94 ~~~~~~~~vDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~~ 167 (519)
+.++|++.|=+ +-..+.+..++|.... ++.++ -+|- |..+++.. +-++.+.++|.|=+==..-+.+..
T Consensus 82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a-~~~~v--TFHRAfD~~~d~~---~al~~l~~lG~~rILTSGg~~~a~ 155 (248)
T PRK11572 82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA-GPLAV--TFHRAFDMCANPL---NALKQLADLGVARILTSGQQQDAE 155 (248)
T ss_pred HHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh-cCCce--EEechhhccCCHH---HHHHHHHHcCCCEEECCCCCCCHH
Confidence 66778776543 3344455566666432 34444 5676 88888654 456667777854333333345566
Q ss_pred HHHHHHHHh
Q 010050 168 EIARIFQLL 176 (519)
Q Consensus 168 D~~~l~~~~ 176 (519)
|....++-+
T Consensus 156 ~g~~~L~~l 164 (248)
T PRK11572 156 QGLSLIMEL 164 (248)
T ss_pred HHHHHHHHH
Confidence 665555543
No 455
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.22 E-value=5.9 Score=42.77 Aligned_cols=211 Identities=14% Similarity=0.133 Sum_probs=130.2
Q ss_pred ecccCCHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCcchHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 010050 16 PLMAQSVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (519)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~D~vElR----~D~---l~~~~~~~~l~~l~~~-~~~pii~T~R~~~eGG~~~~~~~~~ 87 (519)
.++-.+..++...+ .+.|.+.+|.- .|. +...++.+.++.+++. .+.++..-+|..+-=|..+..++..
T Consensus 22 ~~~t~dkl~ia~~L---d~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILEKL---DNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHHHH---HHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 34444444455444 44699999994 442 2333456677777765 4677766688877777767777777
Q ss_pred HHHHHHHHHhCCcEEEEeccccc--hHHHHhHhccCCCceEE--EeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEEccc
Q 010050 88 LEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFI--VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (519)
Q Consensus 88 ~~ll~~~~~~~~~~vDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~ 163 (519)
.+.++.+++.|++.|-|=....+ .....+...++.+..+. +||-+ ..--+.+.+.++.+++.+.|||.+-|+=|.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~ 177 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPVHTIDYFVKLAKEMQEMGADSICIKDMA 177 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 78899999999999887655432 22222222344454443 45533 211156778999999999999998888776
Q ss_pred C--CHhHHHHHHHHhccC-CCCEEEE--ecCccchhhhhccCCCCCccccccCCC-CCCCCCCChHHHhhhhh
Q 010050 164 N--DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (519)
Q Consensus 164 ~--~~~D~~~l~~~~~~~-~~p~i~~--~MG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~ 230 (519)
- ++.++.++.+.+++. +.|+-.= +.--.|..+=+.+-..|....-+++.. +.-.||++.+++...++
T Consensus 178 G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~ 250 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQ 250 (448)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHH
Confidence 4 788998888876543 4453210 112223333343444455444444432 23378888888876664
No 456
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.22 E-value=0.13 Score=55.37 Aligned_cols=74 Identities=28% Similarity=0.355 Sum_probs=51.3
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHhcCCcc--cccc---cccc------CCCCcc
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID--FERAKSLASDVMGAAR--PFED---ILNF------QPEKGA 430 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt--~~ka~~La~~~~~~~~--~~~~---l~~~------~~~~~d 430 (519)
.+++++++|.|+ ||.|++++..|.+.|++|.+++|. .++.++++++++...+ ++.+ +..+ .....|
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 456899999998 899999999999999999999884 4556666666653322 1111 1110 123579
Q ss_pred EEEECCCC
Q 010050 431 ILANATPL 438 (519)
Q Consensus 431 ivInat~~ 438 (519)
+|||+...
T Consensus 287 ~vi~~AG~ 294 (450)
T PRK08261 287 IVVHNAGI 294 (450)
T ss_pred EEEECCCc
Confidence 99998754
No 457
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.20 E-value=0.1 Score=50.86 Aligned_cols=44 Identities=32% Similarity=0.465 Sum_probs=38.9
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
+++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~ 45 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA 45 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 367999986 79999999999999999999999998888887655
No 458
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.14 E-value=1.4 Score=42.08 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHH---hcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 010050 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (519)
Q Consensus 23 ~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~---~~~~~pii~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 99 (519)
.++...++.+.+.|+|.|++|.--+......+.+..+. +..+.|++.. +.++.+.+.|+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga 82 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA 82 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence 44666777778889999999965443211112223332 2346777753 13456778899
Q ss_pred cEEEEeccccchHHHHhHhccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 010050 100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (519)
Q Consensus 100 ~~vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia 160 (519)
++|=+....... ..+...+..+.++-+|.|+ .++ ..++...|+|++++-
T Consensus 83 d~vh~~~~~~~~--~~~~~~~~~~~~~g~~~~t------~~e----~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 83 DGVHLGQDDLPV--ADARALLGPDAIIGLSTHT------LEE----AAAALAAGADYVGVG 131 (212)
T ss_pred CEEecCcccCCH--HHHHHHcCCCCEEEEeCCC------HHH----HHHHhHcCCCEEEEC
Confidence 987775543221 1222233456778888873 233 344447899999983
No 459
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.13 E-value=0.21 Score=49.31 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHH-----HHHHHHhcCCccccccccccCCCCccEEEECC
Q 010050 363 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA-----KSLASDVMGAARPFEDILNFQPEKGAILANAT 436 (519)
Q Consensus 363 ~~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka-----~~La~~~~~~~~~~~~l~~~~~~~~divInat 436 (519)
+.++++..|.|+|+ |-.|.++++-|...++.+.++.|+.++- +.|-+.++...+.-.+.+ .+.+.+++..|+
T Consensus 162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~--~~~e~i~v~vAs 239 (351)
T COG5322 162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYA--LPQEDILVWVAS 239 (351)
T ss_pred CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccc--ccccceEEEEee
Confidence 47888999999999 7799999999999888777777765433 233333333221111111 233344555444
Q ss_pred CCCCCCCCCCCCCCcccccCCcEEEEEecCCCcCHHHHHHHHcC-Cceecc
Q 010050 437 PLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAG-AIIVSG 486 (519)
Q Consensus 437 ~~g~~~~~~~~~l~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G-~~~~~G 486 (519)
.. +. -.+.++.++|+.+++|--| |.+-. ...+..| ..+++|
T Consensus 240 ~~---~g---~~I~pq~lkpg~~ivD~g~-P~dvd--~~vk~~~~V~Ii~G 281 (351)
T COG5322 240 MP---KG---VEIFPQHLKPGCLIVDGGY-PKDVD--TSVKNVGGVRIIPG 281 (351)
T ss_pred cC---CC---ceechhhccCCeEEEcCCc-Ccccc--cccccCCCeEEecC
Confidence 32 11 1366788999999999988 44321 1223333 556655
No 460
>PRK06398 aldose dehydrogenase; Validated
Probab=94.12 E-value=0.069 Score=52.74 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=34.7
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHH
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 403 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~k 403 (519)
++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 367899999987 699999999999999999999998654
No 461
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.08 E-value=5.4 Score=39.35 Aligned_cols=197 Identities=18% Similarity=0.128 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCC-------CCcchHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 010050 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF-------QPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (519)
Q Consensus 21 ~~~~~~~~~~~~~~~~~D~vElR~D~l~~~-------~~~~~l~~l~~~~-~~pii~T~R~~~eGG~~~~~~~~~~~ll~ 92 (519)
+.++.++-++...+.|+|.||+= +.... ++.+.++.+++.. +.++..-.|.. .+.++
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg--~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~ 81 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVG--SGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIE 81 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec--cCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHH
Confidence 44555555555566899999972 12111 2223455555543 46665555531 34567
Q ss_pred HHHHhCCcEEEEeccccc----------------hHHHHhHhccCCCceEEEeec-CCCCCCCHhHHHHHHHHHHHcCCC
Q 010050 93 LAEDLGADYVDFELKVAS----------------NILGKQYSSHQSGTRFIVSCN-LDCETPSEEDLGYLVSRMQATGAD 155 (519)
Q Consensus 93 ~~~~~~~~~vDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~H-~f~~tp~~~~l~~~~~~~~~~gad 155 (519)
.+.+.|++.|-|=+...+ .....+...++.+..+.++.= .|...-+.+++.++++++.+.|+|
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 161 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD 161 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 777888888877766541 122223334567888888883 343112457899999999999999
Q ss_pred EEEEEccc--CCHhHHHHHHHHhccC-C-CCEEEEecC--ccchhhhhccCCCCCccccccCCC-CCCCCCCChHHHhhh
Q 010050 156 IIKLVFSV--NDITEIARIFQLLSHC-Q-VPIIAYSVG--ERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQT 228 (519)
Q Consensus 156 i~Kia~~~--~~~~D~~~l~~~~~~~-~-~p~i~~~MG--~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~ 228 (519)
.+-++=+. -+++++.++++.+.+. + .|+-.=+=- -+|...=+.+-..|....-+++.+ +-..|+++.+++...
T Consensus 162 ~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~ 241 (265)
T cd03174 162 EISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAA 241 (265)
T ss_pred EEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHH
Confidence 98886554 4788998888876543 2 332211111 122233333333455444455543 467999999998876
Q ss_pred hhcc
Q 010050 229 YKVE 232 (519)
Q Consensus 229 ~~~~ 232 (519)
++..
T Consensus 242 l~~~ 245 (265)
T cd03174 242 LEGL 245 (265)
T ss_pred HHhc
Confidence 6543
No 462
>PRK12747 short chain dehydrogenase; Provisional
Probab=94.07 E-value=0.12 Score=50.49 Aligned_cols=45 Identities=31% Similarity=0.411 Sum_probs=36.9
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEEEe-CCHHHHHHHHHHh
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV 411 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~n-Rt~~ka~~La~~~ 411 (519)
++|+++|.|+ ||.|++++..|.+.|++|.+.. |+.++.++++.++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 49 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI 49 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence 4789999987 5999999999999999988864 6677777666554
No 463
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.05 E-value=2.6 Score=42.68 Aligned_cols=121 Identities=18% Similarity=0.156 Sum_probs=79.8
Q ss_pred HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEecc------------------ccchHHHHhHh
Q 010050 57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK------------------VASNILGKQYS 118 (519)
Q Consensus 57 ~~l~~~~~~pii~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~~vDiEl~------------------~~~~~~~~l~~ 118 (519)
+.+.+...+|+++..- +| +++..-.+.++..++.|+..|=||=. ..++...+|..
T Consensus 71 ~~I~~a~~~Pv~~D~d----~G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~A 143 (285)
T TIGR02320 71 EFMFDVTTKPIILDGD----TG---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRA 143 (285)
T ss_pred HHHHhhcCCCEEEecC----CC---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHH
Confidence 3444567899999854 45 47777788889999999999999643 22344555553
Q ss_pred ---ccCCCceEEEeecC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEcccCCHhHHHHHHHHhcc--CCCCEE
Q 010050 119 ---SHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--CQVPII 184 (519)
Q Consensus 119 ---~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~~~~D~~~l~~~~~~--~~~p~i 184 (519)
.+.+.--+|...-| +-..-..++..+..+...+.|||.+=+-....+.+++.++.+.... .+.|++
T Consensus 144 a~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 144 GKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 22222223434323 2112247888888999999999999886556888998888776543 245764
No 464
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.04 E-value=0.11 Score=50.48 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=37.9
Q ss_pred CCceEEEEcc-chhhHHHHHHHHhCCCeEEE-EeCCHHHHHHHHHHh
Q 010050 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV 411 (519)
Q Consensus 367 ~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i-~nRt~~ka~~La~~~ 411 (519)
.+++++|.|+ ||.|++++..|.+.|++|.+ ..|+.++.+++++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 49 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI 49 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4688999988 68999999999999997665 688888888777665
No 465
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.096 Score=51.48 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=35.3
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHH
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 403 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~k 403 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~ 45 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD 45 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence 578899999987 799999999999999999999998654
No 466
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.094 Score=51.39 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=35.0
Q ss_pred CCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHH
Q 010050 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 403 (519)
Q Consensus 365 ~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~k 403 (519)
.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 367899999987 689999999999999999999998765
No 467
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.03 E-value=0.18 Score=50.49 Aligned_cols=92 Identities=25% Similarity=0.132 Sum_probs=60.0
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc----cccc-CCCCccEEEECCCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED----ILNF-QPEKGAILANATPLG 439 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~~~~~~~-~~~~~----l~~~-~~~~~divInat~~g 439 (519)
.+++++|+|+|++|.+++..++.+|+ +|++++++.+|. +++++++... ++..+ +.+. ....+|++|+++...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 57899999999999999998889999 598888888775 5677777532 22211 1110 123589999988532
Q ss_pred CCCCCCCCCCCcccccCCcEEEEEe
Q 010050 440 MHPNTDRVPVSEETLRDYQLVFDAV 464 (519)
Q Consensus 440 ~~~~~~~~~l~~~~l~~~~~v~Di~ 464 (519)
.. .....+.++++..++.+-
T Consensus 199 ~~-----~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 AA-----VRACLESLDVGGTAVLAG 218 (280)
T ss_pred HH-----HHHHHHHhcCCCEEEEec
Confidence 10 011123456666666554
No 468
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.99 E-value=0.051 Score=56.50 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=54.9
Q ss_pred ceEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHhcC-C---ccccccccccCCCCccEEEECCCCCCCC
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMG-A---ARPFEDILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~-G~~v~i~nRt~~ka~~La~~~~~-~---~~~~~~l~~~~~~~~divInat~~g~~~ 442 (519)
.+++|+|| |.+|+.++..|... ++++..+.+..++.+.+++.++. . ...++++++....+.|+|+.|||-+...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 57999998 78999999999877 45765544444555556554431 1 1123333321234689999999976532
Q ss_pred CCCCCCCCcccccCCcEEEEEe
Q 010050 443 NTDRVPVSEETLRDYQLVFDAV 464 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di~ 464 (519)
. +-...++.+..|+|..
T Consensus 83 ~-----~v~~a~~aG~~VID~S 99 (343)
T PRK00436 83 D-----LAPQLLEAGVKVIDLS 99 (343)
T ss_pred H-----HHHHHHhCCCEEEECC
Confidence 1 2222334556677665
No 469
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.97 E-value=0.091 Score=55.01 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=48.7
Q ss_pred CceEEEEccchhhHHHHHHHHhCC-------CeEEEEeCCHH-HHHHHHHHhcC-----Ccc---cc-------cccccc
Q 010050 368 GRMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFE-RAKSLASDVMG-----AAR---PF-------EDILNF 424 (519)
Q Consensus 368 ~k~vlvlGaGgaarai~~~L~~~G-------~~v~i~nRt~~-ka~~La~~~~~-----~~~---~~-------~~l~~~ 424 (519)
..++.|||+|..|.|++..|.+.| .+|.+|.|+.+ .-+.+++.++. .+. .+ .++.+
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e- 89 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE- 89 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH-
Confidence 358999999999999999999887 58999999976 22333333321 111 11 22222
Q ss_pred CCCCccEEEECCCCC
Q 010050 425 QPEKGAILANATPLG 439 (519)
Q Consensus 425 ~~~~~divInat~~g 439 (519)
..+++|+||-++|.-
T Consensus 90 av~~aDiIvlAVPsq 104 (365)
T PTZ00345 90 AVEDADLLIFVIPHQ 104 (365)
T ss_pred HHhcCCEEEEEcChH
Confidence 356789999999864
No 470
>PLN02602 lactate dehydrogenase
Probab=93.97 E-value=0.15 Score=53.08 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=53.0
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCc-----cccc---cccccCCCCccEEEECCCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-----RPFE---DILNFQPEKGAILANATPL 438 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~-----~~~~---~l~~~~~~~~divInat~~ 438 (519)
++|.|+|+|.+|.++++.|...|. ++.+++++.++++..+.++.... ..+. +.+ ..+++|+||-|-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~--~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA--VTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH--HhCCCCEEEECCCC
Confidence 699999999999999999998886 79999999988888777664211 1111 111 25789999987665
Q ss_pred CCCC
Q 010050 439 GMHP 442 (519)
Q Consensus 439 g~~~ 442 (519)
.-.|
T Consensus 116 ~~k~ 119 (350)
T PLN02602 116 RQIP 119 (350)
T ss_pred CCCc
Confidence 4333
No 471
>PRK08264 short chain dehydrogenase; Validated
Probab=93.94 E-value=0.095 Score=50.72 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=36.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCC-eEEEEeCCHHHHHH
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFERAKS 406 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~-~v~i~nRt~~ka~~ 406 (519)
+.+++++|+|+ |+.|++++..|.+.|+ +|.++.|+.+++++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 45789999986 8999999999999999 99999999887654
No 472
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.93 E-value=7.7 Score=38.98 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=123.0
Q ss_pred ecccCCHHHHHHHHHHHHhcCCCEEEEEecCC-------CCCCCcchHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 010050 16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCI-------NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (519)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~D~vElR~D~l-------~~~~~~~~l~~l~~~-~~~pii~T~R~~~eGG~~~~~~~~~ 87 (519)
.++..+..++.. ...+.|+|.+|.=.-.- ...++.+.++.+++. .+.++..-.|..+.=|.-+...+-.
T Consensus 17 ~~~~~~~~~ia~---~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 17 RMRTEDMLPIAE---ALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred eccHHHHHHHHH---HHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHH
Confidence 344444444443 34457999999853210 122334556666643 4678888888664444433344556
Q ss_pred HHHHHHHHHhCCcEEEEeccccc--hHHHHhHhccCCCceEEEeecC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEcccC
Q 010050 88 LEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (519)
Q Consensus 88 ~~ll~~~~~~~~~~vDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadi~Kia~~~~ 164 (519)
.+.++.+.+.|++.|-|-....+ ...+.+...+..+.++..+... +....+.+.+.+..+++.+.|+|.+-|+=|.-
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG 173 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 67788889999999877544322 1222222344556777764432 22233567899999999999999998875553
Q ss_pred --CHhHHHHHHHHhccC-CCCEEEE----ecCccchhhhhccCCCCCccccccCCC-CCCCCCCChHHHhhhhh
Q 010050 165 --DITEIARIFQLLSHC-QVPIIAY----SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (519)
Q Consensus 165 --~~~D~~~l~~~~~~~-~~p~i~~----~MG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~ 230 (519)
+++++.++.+.+++. +.|+ .+ .+| ++...=+.+-..|....-+++.+ +--.|+.+++++...++
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l-~~H~Hnd~G-lA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPI-HLHTHDTSG-LAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALR 245 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeE-EEEecCCCC-hHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence 688898888876543 4333 22 111 12222222223355444455433 34489999998876654
No 473
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.91 E-value=0.1 Score=54.25 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=49.5
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh-cCCcc--------cc---ccccccCCCCccEEEECC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAAR--------PF---EDILNFQPEKGAILANAT 436 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~-~~~~~--------~~---~~l~~~~~~~~divInat 436 (519)
.++.|+|+|.+|.+++..|.+.| .++++.|+++..+++.+.- +.... .+ .++.+ ....+|+||-|+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a~~~aDlVilav 85 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-AANCADVVVMGV 85 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-HHhcCCEEEEEe
Confidence 57999999999999999999988 7888899999988886531 11110 01 12222 245689999999
Q ss_pred CCC
Q 010050 437 PLG 439 (519)
Q Consensus 437 ~~g 439 (519)
|..
T Consensus 86 ps~ 88 (341)
T PRK12439 86 PSH 88 (341)
T ss_pred CHH
Confidence 853
No 474
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.90 E-value=0.058 Score=48.47 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=33.2
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Q 010050 370 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLAS 409 (519)
Q Consensus 370 ~vlvlGaGgaarai~~~L~~~G~-~v~i~nRt~~ka~~La~ 409 (519)
+++|+|+||.|..++..|...|+ ++++++.+.-....|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r 41 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNR 41 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhc
Confidence 48999999999999999999999 99999877544444433
No 475
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.90 E-value=0.13 Score=50.20 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=38.7
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEE-eCCHHHHHHHHHHhc
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDVM 412 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~-nRt~~ka~~La~~~~ 412 (519)
+++|+++|.|+ ||.|++++..|.+.|++|.+. .|+.++++.+..+++
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~ 51 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG 51 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence 45789999986 699999999999999987764 567788888877664
No 476
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.099 Score=51.03 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=35.8
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCH-HHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~-~ka~~La~~~ 411 (519)
|+++|+|+ ||.|++++..|.+.|++|.++.|+. ++.+++.+..
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~ 46 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQY 46 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhcc
Confidence 57999986 7999999999999999999999987 5555555544
No 477
>PRK12746 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.14 Score=49.97 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=38.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEE-EeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i-~nRt~~ka~~La~~~ 411 (519)
+++++++|.|+ |+.|++++..|.+.|++|.+ ..|+.++.+++...+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~ 51 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI 51 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 56789999986 79999999999999998776 589888877776655
No 478
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=93.86 E-value=0.14 Score=50.08 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=37.8
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
|+++|+|+ |+.|++++..|.+.|++|+++.|+.++++++..++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l 44 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI 44 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899986 79999999999999999999999988887776655
No 479
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.86 E-value=0.23 Score=51.04 Aligned_cols=69 Identities=26% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLG 439 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~-~~~~~l~~~~~~~~divInat~~g 439 (519)
.|.+++|.|+|++|.+++..++..|++|+.+.|+.+|. ++++++|... +...+. .....|+++.+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~~Ga~~vi~~~~~---~~~~~d~~i~~~~~~ 234 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALALGAASAGGAYDT---PPEPLDAAILFAPAG 234 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHhCCceecccccc---CcccceEEEECCCcH
Confidence 47899999999999998888888899998899998884 6788888653 222111 123468888777653
No 480
>PRK05650 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.13 Score=51.00 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=37.8
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
++++|+|+ ||.|++++..|.+.|++|+++.|+.++++++.+++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 44 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLL 44 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899987 79999999999999999999999999888776654
No 481
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.85 E-value=0.2 Score=47.96 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCceEEEEcc--chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc--cc---ccc-------cccCCCCccEE
Q 010050 367 AGRMFVLAGA--GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PF---EDI-------LNFQPEKGAIL 432 (519)
Q Consensus 367 ~~k~vlvlGa--Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~--~~---~~l-------~~~~~~~~div 432 (519)
+.|.|+|.|. ||+|-+++..+.+.||.|+-+.|..++-.+|+.+++.... ++ +++ .++.-..-|++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 3578999987 8999999999999999999999999999999988875321 11 111 11112456899
Q ss_pred EECCCCC
Q 010050 433 ANATPLG 439 (519)
Q Consensus 433 Inat~~g 439 (519)
+|.....
T Consensus 86 ~NNAG~~ 92 (289)
T KOG1209|consen 86 YNNAGQS 92 (289)
T ss_pred EcCCCCC
Confidence 9866554
No 482
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.11 Score=52.74 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=82.9
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcccccc-----ccccCCCCccEEEECCCCCCCC
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED-----ILNFQPEKGAILANATPLGMHP 442 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~-----l~~~~~~~~divInat~~g~~~ 442 (519)
...+|.|| |-+|+-++.+|+..|.+-.+.+|+..|..+|...+|.+...|.- +++ .....++|+||...=.
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~-~~~~~~VVlncvGPyt-- 83 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEA-MASRTQVVLNCVGPYT-- 83 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHH-HHhcceEEEecccccc--
Confidence 45789999 77999999999999998899999999999999999876544431 222 3567899999885321
Q ss_pred CCCCCCCCcccccCCcEEEEEecCCC-----cCHHHHHHHHcCCceeccHH
Q 010050 443 NTDRVPVSEETLRDYQLVFDAVYTPR-----KTRLLKDAEAAGAIIVSGVE 488 (519)
Q Consensus 443 ~~~~~~l~~~~l~~~~~v~Di~Y~P~-----~T~ll~~A~~~G~~~~~Gl~ 488 (519)
....|+-...+..+.--+|+.=... ....-++|++.|..+++|.+
T Consensus 84 -~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cG 133 (382)
T COG3268 84 -RYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCG 133 (382)
T ss_pred -ccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCC
Confidence 1234555566667777778863221 11224577788999988764
No 483
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.81 E-value=0.12 Score=51.66 Aligned_cols=69 Identities=28% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~~~l~~~~~~~~divInat~ 437 (519)
.-+.||.++|.|.|..|+..+.+|+..|++|+|.--++-.|-+-|=+ |.+...+++ ...+.||+|.||.
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMe-G~~V~tm~e----a~~e~difVTtTG 278 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAME-GYEVTTLEE----AIREVDIFVTTTG 278 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhh-ccEeeeHHH----hhhcCCEEEEccC
Confidence 56789999999999999999999999999999999998876554422 233334443 3456788888774
No 484
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.77 E-value=0.14 Score=58.56 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=34.7
Q ss_pred ceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 406 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~ 406 (519)
++|.|||||-||+.|++.++..|++|++++++.+..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~ 351 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDL 351 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 68999999999999999999999999999999876543
No 485
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.77 E-value=0.14 Score=53.36 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---cccccCCCCccEEEECCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DILNFQPEKGAILANATP 437 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~-~~~~---~l~~~~~~~~divInat~ 437 (519)
.+++|+|.|+|+.|.+++..++.+|++|+++.++.++...+++++|... +... .+.. ....+|++|+++.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~-~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA-AIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh-hcCCCCEEEECCC
Confidence 4789999999999999999999999988888887777677777787532 1111 1222 1234799999886
No 486
>PRK05086 malate dehydrogenase; Provisional
Probab=93.71 E-value=0.11 Score=53.24 Aligned_cols=72 Identities=26% Similarity=0.294 Sum_probs=46.2
Q ss_pred ceEEEEcc-chhhHHHHHHHHh-CCC--eEEEEeCCHHHHHHHHHHhcC-C-ccc-----cccccccCCCCccEEEECCC
Q 010050 369 RMFVLAGA-GGAGRALAFGAKS-RGA--RVVIFDIDFERAKSLASDVMG-A-ARP-----FEDILNFQPEKGAILANATP 437 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~-~G~--~v~i~nRt~~ka~~La~~~~~-~-~~~-----~~~l~~~~~~~~divInat~ 437 (519)
++++|+|| |++|.++++.|.. .+. .+++++|+.. ++..+-++.. . ... -+++.+ ...++|+||+|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~-~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTP-ALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHH-HcCCCCEEEEcCC
Confidence 47899999 9999999999965 443 7999999743 4333323321 1 111 123222 3567999999887
Q ss_pred CCCCC
Q 010050 438 LGMHP 442 (519)
Q Consensus 438 ~g~~~ 442 (519)
....|
T Consensus 79 ~~~~~ 83 (312)
T PRK05086 79 VARKP 83 (312)
T ss_pred CCCCC
Confidence 65444
No 487
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.70 E-value=0.15 Score=50.20 Aligned_cols=37 Identities=32% Similarity=0.558 Sum_probs=33.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
+++++++|+|+ ||.|++++..|.+.|++|++++|+.+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~ 41 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE 41 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH
Confidence 56789999986 69999999999999999999999875
No 488
>PRK08278 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.14 Score=51.10 Aligned_cols=37 Identities=38% Similarity=0.577 Sum_probs=33.5
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHH
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE 402 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ 402 (519)
+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 56789999987 69999999999999999999999865
No 489
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.66 E-value=0.28 Score=50.08 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=74.4
Q ss_pred ceEEEEccchhhHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHhcCCc------ccc---ccccccCCCCccEEEECCC
Q 010050 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA------RPF---EDILNFQPEKGAILANATP 437 (519)
Q Consensus 369 k~vlvlGaGgaarai~~~L~~~G~--~v~i~nRt~~ka~~La~~~~~~~------~~~---~~l~~~~~~~~divInat~ 437 (519)
++|.|+|||+.|.+.++.|...+. ++.++++..++++..+-++.... ... .+.+ ...++|+|+-+-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~--~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYE--DLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChh--hhcCCCEEEEeCC
Confidence 378999999999999999987775 89999999888887776664211 001 1122 3567999987665
Q ss_pred CCCCCCCCCCCC-Cc--cc-------c---cCCcEEEEEecCCCcCHHHHHHHHcCC---ceeccHHHHH
Q 010050 438 LGMHPNTDRVPV-SE--ET-------L---RDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMFL 491 (519)
Q Consensus 438 ~g~~~~~~~~~l-~~--~~-------l---~~~~~v~Di~Y~P~~T~ll~~A~~~G~---~~~~Gl~mli 491 (519)
..-.|......+ .. .. + .++ .++=++.||.++--.-..+-.|. +++.+-.+|-
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LD 147 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLD 147 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEEEecCcHHHHHHHHHHhcCCCccceecccchHH
Confidence 555554222111 11 01 1 133 34556779998765555565554 3455544443
No 490
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=93.65 E-value=0.27 Score=49.86 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=50.4
Q ss_pred CCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcc-ccccccccCCCCccEEEECCC
Q 010050 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-PFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 367 ~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~-~~~~l~~~~~~~~divInat~ 437 (519)
.+.+++|.|+|++|.+++..++.+|++|+++.++.++.+.+. .++.... .+.+.. ....+|++++++.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~~d~vid~~g 223 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAES--EGGGFDVVVEATG 223 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCccccc--cCCCCCEEEECCC
Confidence 468899999999999999999999999999999888876554 4765431 222211 2245899999874
No 491
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.16 Score=50.57 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=50.6
Q ss_pred ceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEE
Q 010050 369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILAN 434 (519)
Q Consensus 369 k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~----~~~~~---l~~~------~~~~~divIn 434 (519)
|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+..+... .++.+ +..+ .....|+|||
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS 82 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67999986 799999999999999999999999988888766543221 12211 1110 1234699999
Q ss_pred CCCCC
Q 010050 435 ATPLG 439 (519)
Q Consensus 435 at~~g 439 (519)
+....
T Consensus 83 ~ag~~ 87 (276)
T PRK06482 83 NAGYG 87 (276)
T ss_pred CCCCC
Confidence 87654
No 492
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.62 E-value=3.9 Score=39.09 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcchHHHHHhc-CCC-cEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 010050 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPL-PVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (519)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~D~vElR~D~l~~~~~~~~l~~l~~~-~~~-pii~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (519)
..+.+++...++++.+.++|.|=+.. ..+...++. .+. ..+-|.-.-..|. ...+....-.+.|++
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p---------~~v~~~~~~l~~~~~~v~~~~~fp~g~---~~~~~k~~eve~A~~ 80 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNP---------CFVPLAREALKGSGVKVCTVIGFPLGA---TTTEVKVAEAREAIA 80 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcH---------HHHHHHHHHcCCCCcEEEEEEecCCCC---CcHHHHHHHHHHHHH
Confidence 44677777777787777888886532 123333221 122 3344443333333 233555666889999
Q ss_pred hCCcEEEEecccc-------chHHHHh---Hh-ccCCCceEEEeecCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--cc-
Q 010050 97 LGADYVDFELKVA-------SNILGKQ---YS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FS- 162 (519)
Q Consensus 97 ~~~~~vDiEl~~~-------~~~~~~l---~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi~Kia--~~- 162 (519)
.|++-||+=++.. +...+++ .. .+.--.|+|+-.-.. +.+++....+-+.+.|||++|.. ..
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~ 156 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGP 156 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 9999999977653 1123333 32 221234555443222 35678888999999999999997 43
Q ss_pred -cCCHhHHHHHHHHhc
Q 010050 163 -VNDITEIARIFQLLS 177 (519)
Q Consensus 163 -~~~~~D~~~l~~~~~ 177 (519)
..+.+|+..+.+..+
T Consensus 157 ~~at~~~v~~~~~~~~ 172 (203)
T cd00959 157 GGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 246788877766655
No 493
>PRK05855 short chain dehydrogenase; Validated
Probab=93.61 E-value=0.15 Score=56.21 Aligned_cols=48 Identities=38% Similarity=0.570 Sum_probs=42.4
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
....+++++|+|+ ||.|++++..|.+.|++|.++.|+.++++++++.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~ 359 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELI 359 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3466789999987 79999999999999999999999999988887765
No 494
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.60 E-value=0.14 Score=55.50 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCCCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHhcCCcc--ccccccccCCCCccEEEECCC
Q 010050 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAAR--PFEDILNFQPEKGAILANATP 437 (519)
Q Consensus 364 ~~~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~-ka~~La~~~~~~~~--~~~~l~~~~~~~~divInat~ 437 (519)
.+++|++|||+|+|.+|..=+..|.+.|++|+|+..... ..+++++.-...+. .+. .+ .+.++++||-||.
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~--~~-dl~~~~lv~~at~ 81 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFD--ES-LLDTCWLAIAATD 81 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC--hH-HhCCCEEEEECCC
Confidence 568899999999999988888899999999999987653 34445443211111 111 01 2345677777774
No 495
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=93.59 E-value=0.16 Score=57.66 Aligned_cols=48 Identities=35% Similarity=0.605 Sum_probs=42.6
Q ss_pred CCCCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 364 ~~~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
..+.+|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++.+.+.+
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l 458 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEI 458 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 4578899999987 79999999999999999999999999888776655
No 496
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.59 E-value=0.14 Score=52.11 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=32.7
Q ss_pred CceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHH
Q 010050 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA 404 (519)
Q Consensus 368 ~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka 404 (519)
+++++|.|+ |..|+.++..|.+.|++|.++.|+.++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDP 41 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCch
Confidence 589999995 8999999999999999999988876543
No 497
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.58 E-value=0.25 Score=48.18 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccccc------ccCCCCccEEEECCCC
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDIL------NFQPEKGAILANATPL 438 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~-~~~~~l~------~~~~~~~divInat~~ 438 (519)
..+.+++|+|+|++|++++..++..|.+|+++.++.++.+.+ ..++... ++..+.. .......|+++++++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 357899999999999999998889999999999998877665 4454321 1111100 0012458999998763
Q ss_pred CCCCCCCCCCCCcccccCCcEEEEEec
Q 010050 439 GMHPNTDRVPVSEETLRDYQLVFDAVY 465 (519)
Q Consensus 439 g~~~~~~~~~l~~~~l~~~~~v~Di~Y 465 (519)
... .....+.++++..++++.-
T Consensus 212 ~~~-----~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 PET-----LAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHH-----HHHHHHhcccCCEEEEEcc
Confidence 110 0011234556666666653
No 498
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.57 E-value=0.15 Score=47.29 Aligned_cols=96 Identities=25% Similarity=0.216 Sum_probs=60.9
Q ss_pred CCCceEEEEccchhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHhcCCcccc--------------------c----cc
Q 010050 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF--------------------E----DI 421 (519)
Q Consensus 366 ~~~k~vlvlGaGgaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~~~~~~~~--------------------~----~l 421 (519)
+...+++|+|+|-+|+.++..|..+|+++++.+..+++.+++-..... .+.+ + .+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY-FIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE-ESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc-eEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 456899999999999999999999999999999999888776543321 1111 0 01
Q ss_pred cccCCCCccEEEECCCC-CCCCCCCCCCCCcc---cccCCcEEEEEecC
Q 010050 422 LNFQPEKGAILANATPL-GMHPNTDRVPVSEE---TLRDYQLVFDAVYT 466 (519)
Q Consensus 422 ~~~~~~~~divInat~~-g~~~~~~~~~l~~~---~l~~~~~v~Di~Y~ 466 (519)
.+ ....+|+||++.-. +-. .+..+..+ .++++.++.|++-.
T Consensus 97 ~~-~i~~~d~vI~~~~~~~~~---~P~lvt~~~~~~m~~gsvIvDis~D 141 (168)
T PF01262_consen 97 AE-FIAPADIVIGNGLYWGKR---APRLVTEEMVKSMKPGSVIVDISCD 141 (168)
T ss_dssp HH-HHHH-SEEEEHHHBTTSS------SBEHHHHHTSSTTEEEEETTGG
T ss_pred HH-HHhhCcEEeeecccCCCC---CCEEEEhHHhhccCCCceEEEEEec
Confidence 11 23568999865532 211 12234443 35788999999754
No 499
>PLN02214 cinnamoyl-CoA reductase
Probab=93.57 E-value=0.15 Score=52.83 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=34.3
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHH
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER 403 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~k 403 (519)
+++++++|.|+ |..|+.++..|.+.|++|..+.|+.++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 56789999998 899999999999999999999998765
No 500
>PRK07775 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.19 Score=50.01 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCceEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHh
Q 010050 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 411 (519)
Q Consensus 366 ~~~k~vlvlGa-Ggaarai~~~L~~~G~~v~i~nRt~~ka~~La~~~ 411 (519)
.+.|.++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++...+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~ 54 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKI 54 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45678999987 79999999999999999999999988877766544
Done!