BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010051
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 88
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 148
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 149 GSFDESVRIW 158
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 107 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 152 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 193
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 194 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 251
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 252 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 311
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 312 HPTENIIASAALENDKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 86
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 147 GSFDESVRIW 156
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 105 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 150 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIP------TASYQN-------SLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P +A + N S SY
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 192 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 249
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 250 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 309
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 310 HPTENIIASAALENDKTIKLW 330
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLI------NSGEKQKKIPT-ASYQNSLSYHGSAIN 68
V+ + P +A GG D ++ + N K+K + +Y ++ S+ S +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 69 ILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVL--DLQWSTDGAFLLSGSVDNS 126
IL S G +W + E+GQ +L++ H DVL DL S G +SG D
Sbjct: 169 ILTASG-DGTCALWDV---ESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 127 CIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTK 178
++WD+ G +Q + H V V + P AS S D TCR+Y R +
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 16 VLTLDFHP--ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFS 73
VL LD P +GG D +W + SG+ + T H S +N +R+
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET---------HESDVNSVRYY 249
Query: 74 PCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVL-----DLQWSTDGAFLLSGSVDNSCI 128
P G T + + ++ + K+ + + +S G L +G D +
Sbjct: 250 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309
Query: 129 IWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173
+WDV KGS + IL H + V + P S S D T R++A
Sbjct: 310 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + L H VL + W D ++S S D I+WD + + +V A+
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 154 DPLSKYVASLSSDRTCRIY 172
P +A D C +Y
Sbjct: 115 APSGCAIACGGLDNKCSVY 133
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 70
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 131 GSFDESVRIW 140
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 89 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 134 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 233
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 294 HPTENIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 81
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 142 GSFDESVRIW 151
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 100 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 145 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 186
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 187 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 244
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 245 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 304
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 305 HPTENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 65
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 126 GSFDESVRIW 135
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 84 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 129 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 170
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 171 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 228
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 229 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 288
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 289 HPTENIIASAALENDKTIKLW 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 69
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 130 GSFDESVRIW 139
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 88 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 133 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 174
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 175 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 232
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 233 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 292
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 293 HPTENIIASAALENDKTIKLW 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 64
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 125 GSFDESVRIW 134
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 83 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 128 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 227
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 288 HPTENIIASAALENDKTIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 70
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 131 GSFDESVRIW 140
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 89 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 134 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 233
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 294 HPTENIIASAALENDKTIKLW 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 64
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 125 GSFDESVRIW 134
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 83 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 128 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 227
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 288 HPTENIIASAALENDKTIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 70
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 131 GSFDESVRIW 140
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 89 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 134 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 233
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 294 HPTENIIASAALENDKTIKLW 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 67
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 128 GSFDESVRIW 137
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 86 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 131 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 230
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 291 HPTENIIASAALENDKTIKLF 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 67
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 128 GSFDESVRIW 137
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 86 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 230
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T ++Y
Sbjct: 291 HPTENIIASAALENDKTIKLY 311
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 131 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG------KFEKTISGH 67
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 128 GSFDESVRIW 137
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA AD IKIW G+ +K I S S N+L
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 86 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 131 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 230
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 291 HPTENIIASAALENDKTIKLW 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 60
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 121 GSFDESVRIW 130
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 79 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 124 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 165
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 223
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 283
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 284 HPTENIIASAALENDKTIKLW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 63
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 124 GSFDESVRIW 133
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 82 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI---- 80
S LL + D +KIW ++SG+ K +L H + + F+P ++
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG 135
IW + T K LK L H V + ++ DG+ ++S S D C IWD G
Sbjct: 127 DESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 136 SVLQ-ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L+ ++D V V + P KY+ + + D T +++
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G+ K +P S S SY
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 168
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 169 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 226
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 227 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 286
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 287 HPTENIIASAALENDKTIKLW 307
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 67
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 128 GSFDESVRIW 137
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 86 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKL 84
S LL + D +KIW ++SG+ K +L H + + F+P LI+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNP-QSNLIV-SG 128
Query: 85 HTTETGQAWKV-----LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQ 139
E+ + W V LK L H V + ++ DG+ ++S S D C IWD G L+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 140 -ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
++D V V + P KY+ + + D +++
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 64/210 (30%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G K +P S S SY
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 63 HGSA---------------------INILRFSPCG---------GELIIW--------KL 84
G ++ ++FSP G +L +W K
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Query: 85 HTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH 144
+T + + + N S T G +++SGS DN IW++ ++Q L H
Sbjct: 233 YTGHKNEKYCIFANFSV-----------TGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 145 FHYVQGVAWDPLSKYVAS--LSSDRTCRIY 172
V A P +AS L +D+T +++
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFH 102
P + +L+ H A++ ++FSP G L IW + K K +S H
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------KFEKTISGH 67
Query: 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162
+ + D+ WS+D L+S S D + IWDV+ G L+ L H +YV ++P S + S
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 163 LSSDRTCRIY 172
S D + RI+
Sbjct: 128 GSFDESVRIW 137
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK V ++ F P LA+ AD IKIW G+ +K I S S N+L
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
+ L IW + + K LK L H V ++ ++SGS D S IWDV
Sbjct: 86 ASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G L+ L AH V V ++ + S S D CRI+
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKL 84
S LL + D +KIW ++SG+ K +L H + + F+P LI+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK---------TLKGHSNYVFCCNFNP-QSNLIV-SG 128
Query: 85 HTTETGQAWKV-----LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQ 139
E+ + W V LK L H V + ++ DG+ ++S S D C IWD G L+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 140 -ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
++D V V + P KY+ + + D T +++
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 46/201 (22%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-------------ASYQNSLSY 62
V +F+P S L+ +G D ++IW + +G K +P S S SY
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 63 HGSA---------------------INILRFSPCGGELIIWKLHTTETGQAW-----KVL 96
G ++ ++FSP G ++ L T + W K L
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL 230
Query: 97 KNLSFHR--KDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
K + H+ K + +S T G +++SGS DN IW++ ++Q L H V A
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 154 DPLSKYVAS--LSSDRTCRIY 172
P +AS L +D+T +++
Sbjct: 291 HPTENIIASAALENDKTIKLW 311
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINIL 70
H L ++P LLA+ G D I+IW E I + H + +
Sbjct: 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIW---GTEGDSWICKSVLSEG---HQRTVRKV 67
Query: 71 RFSPCGGEL---------IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSG 121
+SPCG L IWK + + + + L H +V + W+ G L +
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDF----ECVTTLEGHENEVKSVAWAPSGNLLATC 123
Query: 122 SVDNSCIIWDVNKG---SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTK 178
S D S +W+V++ + +L++H V+ V W P + +AS S D T ++Y
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE---- 179
Query: 179 SKGVEKMNYVCQHVITKAGQHST 201
E+ ++VC T G ST
Sbjct: 180 ----EEDDWVC--CATLEGHEST 196
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 311 LYIYDTESVPPIA--ILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPI 368
+ I+ TE I +L+ H + +AWS YLA +S D + + D+
Sbjct: 40 IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT 99
Query: 369 SLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKEPDK 411
+L G+ ++E KS S +++ S + + E E D+
Sbjct: 100 TLEGH---ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC 75
V + F P +A+ D +K+W N Q +L+ H S++ + FSP
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ----------TLTGHSSSVRGVAFSPD 478
Query: 76 GGELIIWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWD 131
G + +T + W ++L+ L+ H V + +S DG + S S D + +W+
Sbjct: 479 GQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Query: 132 VNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
N G +LQ L H V GVA+ P + +AS SSD+T +++
Sbjct: 537 RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 21 FHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI 80
F P +A+ D +K+W N Q +L+ H S++ + FSP G +
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQLLQ----------TLTGHSSSVWGVAFSPDGQTIA 155
Query: 81 IWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS 136
+T + W ++L+ L+ H V + +S DG + S S D + +W+ N G
Sbjct: 156 --SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 212
Query: 137 VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR 175
+LQ L H V+GVA+ P + +AS S D+T +++ NR
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NR 250
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC 75
V + F P +A+ D +K+W N Q +L+ H S++ + FSP
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ----------TLTGHSSSVWGVAFSPD 355
Query: 76 GGELIIWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWD 131
G + +T + W ++L+ L+ H V + +S DG + S S D + +W+
Sbjct: 356 GQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 132 VNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR 175
N G +LQ L H V GVA+ P + +AS S D+T +++ NR
Sbjct: 414 RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW-NR 455
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 57 QNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWS 112
+N L H S++ + FSP G + +T + W ++L+ L+ H V + +S
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 66
Query: 113 TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
DG + S S D + +W+ N G +LQ L H V+GVA+ P + +AS S D+T +++
Sbjct: 67 PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 173 ANR 175
NR
Sbjct: 126 -NR 127
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC 75
V + F P +A+ D +K+W N Q +L+ H S++ + FSP
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----------TLTGHSSSVWGVAFSPD 191
Query: 76 GGELIIWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWD 131
G + +T + W ++L+ L+ H V + +S DG + S S D + +W+
Sbjct: 192 GQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 132 VNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR 175
N G +LQ L H V GVA+ P + +AS S D+T +++ NR
Sbjct: 250 RN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW-NR 291
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 21 FHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI 80
F P +A+ D +K+W N Q +L+ H S++ + FSP G +
Sbjct: 270 FRPDGQTIASASDDKTVKLWNRNGQLLQ----------TLTGHSSSVWGVAFSPDGQTIA 319
Query: 81 IWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS 136
+T + W + L+ L+ H V + +S DG + S S D + +W+ N G
Sbjct: 320 --SASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 376
Query: 137 VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR 175
+LQ L H V+GVA+ P + +AS S D+T +++ NR
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NR 414
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 21 FHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI 80
F P +A+ D +K+W N Q +L+ H S++ + FSP G +
Sbjct: 475 FSPDGQTIASASDDKTVKLWNRNGQLLQ----------TLTGHSSSVRGVAFSPDGQTIA 524
Query: 81 IWKLHTTETGQAW----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWD 131
+T + W ++L+ L+ H V + +S DG + S S D + +W+
Sbjct: 525 --SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF-- 72
PV + FHP+ ++ + D IK+W +G+ ++ +L H ++ + F
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDISFDH 160
Query: 73 -----SPCGGELII--WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDN 125
+ C ++ I W Q ++ ++ + H +V + +G ++S S D
Sbjct: 161 SGKLLASCSADMTIKLWDF------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 126 SCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173
+ +W+V G ++ H +V+ V + +AS S+D+T R++
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYAN 174
G FLLSGS D + +WDV+ G L L H ++V+GV + K++ S + D+T R++
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW-- 365
Query: 175 RPTKSKGVEKMNYVCQHVITKAGQHST 201
K+K K +H +T H T
Sbjct: 366 -DYKNKRCMKTLNAHEHFVTSLDFHKT 391
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 51 IPTASYQNSLSYHGSAINILRFSPCGGELI------IWKLHTTETGQAWKVLKNLSFHRK 104
IP + +LS H S + + F P ++ K+ ETG + LK H
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG---HTD 151
Query: 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS 164
V D+ + G L S S D + +WD ++ + H H V V+ P ++ S S
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 165 SDRTCRIY 172
D+T +++
Sbjct: 212 RDKTIKMW 219
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIW 40
V +LDFH + + TG D +K+W
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 25/152 (16%)
Query: 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPT-ASYQNSLSYHGSAINI 69
H + VL L F+ +G++ T D I +W + S PT + + L H +A+N+
Sbjct: 211 HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS-------PTDITLRRVLVGHRAAVNV 261
Query: 70 LRF------SPCGGELI-IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGS 122
+ F S G I +W T E ++ L+ H++ + LQ+ ++SGS
Sbjct: 262 VDFDDKYIVSASGDRTIKVWNTSTCE------FVRTLNGHKRGIACLQYR--DRLVVSGS 313
Query: 123 VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154
DN+ +WD+ G+ L++L+ H V+ + +D
Sbjct: 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD 345
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 81 IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQI 140
IW +T E + L+ H VL LQ+ D +++GS D++ +WDVN G +L
Sbjct: 157 IWDKNTLECKRI------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 208
Query: 141 LDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L H V + ++ + + + S DR+ ++
Sbjct: 209 LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVW 238
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 104 KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL 163
K V LQ+ D ++SG DN+ IWD N +IL H V + +D + + +
Sbjct: 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITG 189
Query: 164 SSDRTCRIY 172
SSD T R++
Sbjct: 190 SSDSTVRVW 198
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 37/145 (25%)
Query: 118 LLSGSVDNSCIIWDVNKGS---VLQ-ILDAHFHYVQGVAWDP---LSKYVASLSSDRTCR 170
++G DN IW N + VL+ L+ H +V+ VAW P L Y+AS+S DRTC
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSA--KNHLFHDETLPSFFRRLAWSP 228
I+ T D++ K L +E P R +WS
Sbjct: 235 IW----------------------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 266
Query: 229 DGSFLLVPAGSYKISSMSESINSAY 253
G+ L + G K++ E++ +
Sbjct: 267 SGNVLALSGGDNKVTLWKENLEGKW 291
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 37/145 (25%)
Query: 118 LLSGSVDNSCIIWDVNKGS---VLQ-ILDAHFHYVQGVAWDP---LSKYVASLSSDRTCR 170
++G DN IW N + VL+ L+ H +V+ VAW P L Y+AS+S DRTC
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSA--KNHLFHDETLPSFFRRLAWSP 228
I+ T D++ K L +E P R +WS
Sbjct: 233 IW----------------------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Query: 229 DGSFLLVPAGSYKISSMSESINSAY 253
G+ L + G K++ E++ +
Sbjct: 265 SGNVLALSGGDNKVTLWKENLEGKW 289
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 37/145 (25%)
Query: 118 LLSGSVDNSCIIWDVNKGS---VLQ-ILDAHFHYVQGVAWDP---LSKYVASLSSDRTCR 170
++G DN IW N + VL+ L+ H +V+ VAW P L Y+AS+S DRTC
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSA--KNHLFHDETLPSFFRRLAWSP 228
I+ T D++ K L +E P R +WS
Sbjct: 233 IW----------------------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Query: 229 DGSFLLVPAGSYKISSMSESINSAY 253
G+ L + G K++ E++ +
Sbjct: 265 SGNVLALSGGDNKVTLWKENLEGKW 289
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 37/145 (25%)
Query: 118 LLSGSVDNSCIIWDVNKGS---VLQ-ILDAHFHYVQGVAWDP---LSKYVASLSSDRTCR 170
++G DN IW N + VL+ L+ H +V+ VAW P L Y AS+S DRTC
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSA--KNHLFHDETLPSFFRRLAWSP 228
I+ T D++ K L +E P R +WS
Sbjct: 233 IW----------------------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Query: 229 DGSFLLVPAGSYKISSMSESINSAY 253
G+ L + G K++ E++ +
Sbjct: 265 SGNVLALSGGDNKVTLWKENLEGKW 289
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 37/145 (25%)
Query: 118 LLSGSVDNSCIIWDVNKGS---VLQ-ILDAHFHYVQGVAWDP---LSKYVASLSSDRTCR 170
++G DN IW N + VL+ L+ H +V+ VAW P L Y+AS+S DRTC
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSA--KNHLFHDETLPSFFRRLAWSP 228
I+ T D++ K L +E P R +WS
Sbjct: 233 IW----------------------------TQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Query: 229 DGSFLLVPAGSYKISSMSESINSAY 253
G+ L + G K++ E++ +
Sbjct: 265 SGNVLALSGGDNKVTLWKENLEGKW 289
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF--- 72
V+T + P +A GG D I+ + + E ++ L+ H ++ RF
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-----RELAGHTGYLSCCRFLDD 154
Query: 73 -----SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
S +W + T + + H DV+ L + D +SG+ D S
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187
+WDV +G Q H + + + P A+ S D TCR++ R + E M Y
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ----ELMTY 264
Query: 188 VCQHVITKAGQHSTDDSKSAK 208
++I G S SKS +
Sbjct: 265 SHDNII--CGITSVSFSKSGR 283
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
+ + L H + + W TD LLS S D IIWD + + + +V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVE 183
P YVA D C IY N T+ V
Sbjct: 106 APSGNYVACGGLDNICSIY-NLKTREGNVR 134
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V++L P + L +G D K+W + G ++ + + H S IN + F
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---------TFTGHESDINAICF 234
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKD-----VLDLQWSTDGAFLLSGSVDNSC 127
P G T + + L + D + + +S G LL+G D +C
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+WD K +L H + V + VA+ S D +I+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF--- 72
V+T + P +A GG D I+ + + E ++ L+ H ++ RF
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-----RELAGHTGYLSCCRFLDD 154
Query: 73 -----SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
S +W + T + + H DV+ L + D +SG+ D S
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187
+WDV +G Q H + + + P A+ S D TCR++ R + E M Y
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ----ELMTY 264
Query: 188 VCQHVITKAGQHSTDDSKSAK 208
++I G S SKS +
Sbjct: 265 SHDNII--CGITSVSFSKSGR 283
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
+ + L H + + W TD L+S S D IIWD + + + +V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVE 183
P YVA D C IY N T+ V
Sbjct: 106 APSGNYVACGGLDNICSIY-NLKTREGNVR 134
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V++L P + L +G D K+W + G ++ + + H S IN + F
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---------TFTGHESDINAICF 234
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKD-----VLDLQWSTDGAFLLSGSVDNSC 127
P G T + + L + D + + +S G LL+G D +C
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+WD K +L H + V + VA+ S D +I+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF--- 72
V+T + P +A GG D I+ + + E ++ L+ H ++ RF
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-----RELAGHTGYLSCCRFLDD 154
Query: 73 -----SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
S +W + T + + H DV+ L + D +SG+ D S
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187
+WDV +G Q H + + + P A+ S D TCR++ R + E M Y
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ----ELMTY 264
Query: 188 VCQHVITKAGQHSTDDSKSAK 208
++I G S SKS +
Sbjct: 265 SHDNII--CGITSVSFSKSGR 283
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
+ + L H + + W TD L+S S D IIWD + + + +V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVE 183
P YVA D C IY N T+ V
Sbjct: 106 APSGNYVACGGLDNICSIY-NLKTREGNVR 134
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V++L P + L +G D K+W + G ++ + + H S IN + F
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---------TFTGHESDINAICF 234
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKD-----VLDLQWSTDGAFLLSGSVDNSC 127
P G T + + L + D + + +S G LL+G D +C
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+WD K +L H + V + VA+ S D +I+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF--- 72
V+T + P +A GG D I+ + + E ++ L+ H ++ RF
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-----RELAGHTGYLSCCRFLDD 154
Query: 73 -----SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
S +W + T + + H DV+ L + D +SG+ D S
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187
+WDV +G Q H + + + P A+ S D TCR++ R + E M Y
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ----ELMTY 264
Query: 188 VCQHVITKAGQHSTDDSKSAK 208
++I G S SKS +
Sbjct: 265 SHDNII--CGITSVSFSKSGR 283
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
+ + L H + + W TD LLS S D IIWD + + + +V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVE 183
P YVA D C IY N T+ V
Sbjct: 106 APSGNYVACGGLDNICSIY-NLKTREGNVR 134
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V++L P + L +G D K+W + G ++ + + H S IN + F
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---------TFTGHESDINAICF 234
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKD-----VLDLQWSTDGAFLLSGSVDNSC 127
P G T + + L + D + + +S G LL+G D +C
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+WD K +L H + V + VA+ S D +I+
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF--- 72
V+T + P +A GG D I+ + + E ++ L+ H ++ RF
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-----RELAGHTGYLSCCRFLDD 165
Query: 73 -----SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
S +W + T + + H DV+ L + D +SG+ D S
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187
+WDV +G Q H + + + P A+ S D TCR++ R + E M Y
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ----ELMTY 275
Query: 188 VCQHVITKAGQHSTDDSKSAK 208
++I G S SKS +
Sbjct: 276 SHDNII--CGITSVSFSKSGR 294
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 97 KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL 156
+ L H + + W TD L+S S D IIWD + + + +V A+ P
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 157 SKYVASLSSDRTCRIYANRPTKSKGVE 183
YVA D C IY N T+ V
Sbjct: 120 GNYVACGGLDNICSIY-NLKTREGNVR 145
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V++L P + L +G D K+W + G ++ + + H S IN + F
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---------TFTGHESDINAICF 245
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKD-----VLDLQWSTDGAFLLSGSVDNSC 127
P G T + + L + D + + +S G LL+G D +C
Sbjct: 246 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 305
Query: 128 IIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+WD K +L H + V + VA+ S D +I+
Sbjct: 306 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 79 LIIWKLHTTETGQAWKVL-KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV 137
+I+WKL T+ +A+ V + L+ H V D+ S+DG F LSGS D +WD+ G
Sbjct: 407 IILWKL--TKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464
Query: 138 LQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAG 197
+ H V VA+ ++ + S S DRT +++ C++ I++ G
Sbjct: 465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-----------CKYTISEGG 513
Query: 198 QHSTD 202
+ D
Sbjct: 514 EGHRD 518
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINS-GEKQKKIPTASYQNSLSYHGSAINILR 71
TK VL++ F + + + D IK+W N+ GE + I H ++ +R
Sbjct: 472 TKDVLSVAFSLDNRQIVSASRDRTIKLW--NTLGECKYTISEGG-----EGHRDWVSCVR 524
Query: 72 FSPCGGELIIWKLHTTETGQAW-----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNS 126
FSP + I +T + W K+ L+ H V + S DG+ SG D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 127 CIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
++WD+ +G L L+A+ + + + P ++Y +++ +I+
Sbjct: 585 VLLWDLAEGKKLYSLEAN-SVIHALCFSP-NRYWLCAATEHGIKIW 628
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V T+ P L A+GG D + +W + G+K + S ++L + + R+
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN-----RY 615
Query: 73 SPCGGE---LIIWKLHTTETGQAWKVLKNLSFHRKD-------------VLDLQWSTDGA 116
C + IW L + + KV + D L WS DG+
Sbjct: 616 WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS 675
Query: 117 FLLSGSVDNSCIIWDVNK 134
L SG D +W + +
Sbjct: 676 TLFSGYTDGVIRVWGIGR 693
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV---N 133
GEL +W L + + H KDVL + +S D ++S S D + +W+
Sbjct: 452 GELRLWDLAAGVS------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 134 KGSVLQILDAHFHYVQGVAWDP--LSKYVASLSSDRTCRIY 172
K ++ + + H +V V + P L + S S D+T +++
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 28 LATGGADYDIKIWLINSGEKQKKIPTASYQ-NSLSYHGSAINILRFSPCGGELIIWKLHT 86
LA G + ++++W + ++ + + + S + SLS++ IL G + H
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHI-----HH 224
Query: 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS----VLQILD 142
+ A + LS H ++V L+W+ DG L SG DN +W G LQ
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 284
Query: 143 AHFHYVQGVAWDPLSKYVASL---SSDRTCRIY 172
H V+ VAW P V + +SDR RI+
Sbjct: 285 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
++ V L + P LA+GG D + +W GE +P ++ + H A+ + +
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPLQTF----TQHQGAVKAVAW 295
Query: 73 SPCGGELIIWKLHTTETG--------QAWKVLKNLSFHRKD----VLDLQWSTDGAFLLS 120
P W+ + TG + W V D V + WS L+S
Sbjct: 296 CP-------WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 348
Query: 121 GS--VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G N +IW + + L H V + P VAS ++D T R++
Sbjct: 349 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 118 LLSGSVDNSCIIWDVNKGSVLQILDAH--FHYVQGVAWDPLSKYVASLSSDRTCRIY--- 172
+L+ ++DNS +W + G +LQ+L Y+ VAW Y+A +S +++
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 173 -----ANRPTKSKGVEKMNYVCQHVI---TKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224
N + S V +++ +++ +++G D + A++H+ L
Sbjct: 189 QQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 247
Query: 225 AWSPDGSFL 233
W+PDG L
Sbjct: 248 RWAPDGRHL 256
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS 136
GEL +W +TG +L L+FHR ++ ++W+ DG ++S V+N I+W+V G+
Sbjct: 130 GELRLWN----KTG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182
Query: 137 VLQILDAHF 145
V+Q HF
Sbjct: 183 VMQ----HF 187
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 28 LATGGADYDIKIWLINSGEKQKKIPTASYQ-NSLSYHGSAINILRFSPCGGELIIWKLHT 86
LA G + ++++W + ++ + + + S + SLS++ IL G + H
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHI-----HH 213
Query: 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS----VLQILD 142
+ A + LS H ++V L+W+ DG L SG DN +W G LQ
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273
Query: 143 AHFHYVQGVAWDPLSKYVASL---SSDRTCRIY 172
H V+ VAW P V + +SDR RI+
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
++ V L + P LA+GG D + +W GE +P ++ + H A+ + +
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPLQTF----TQHQGAVKAVAW 284
Query: 73 SPCGGELIIWKLHTTETG--------QAWKVLKNLSFHRKD----VLDLQWSTDGAFLLS 120
P W+ + TG + W V D V + WS L+S
Sbjct: 285 CP-------WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337
Query: 121 GS--VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G N +IW + + L H V + P VAS ++D T R++
Sbjct: 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 118 LLSGSVDNSCIIWDVNKGSVLQILDAH--FHYVQGVAWDPLSKYVASLSSDRTCRIY--- 172
+L+ ++DNS +W + G +LQ+L Y+ VAW Y+A +S +++
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 173 -----ANRPTKSKGVEKMNYVCQHVI---TKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224
N + S V +++ +++ +++G D + A++H+ L
Sbjct: 178 QQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 236
Query: 225 AWSPDGSFL 233
W+PDG L
Sbjct: 237 RWAPDGRHL 245
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
+I+WKL ET + L H V D+ S+DG F LSGS D + +WD+ G+
Sbjct: 63 IIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT 121
Query: 139 QILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+ H V VA+ ++ + S S D+T +++
Sbjct: 122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK VL++ F + + +G D IK+W + Y H ++ +RF
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLW--------NTLGVCKYTVQDESHSEWVSCVRF 179
Query: 73 SPCGGELIIWKLHTTETGQAW-----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
SP II + + W K+ N H + + S DG+ SG D
Sbjct: 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239
Query: 128 IIWDVNKGSVLQILDA 143
++WD+N+G L LD
Sbjct: 240 MLWDLNEGKHLYTLDG 255
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 33/246 (13%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------G 77
++ + D I +W + E IP Q +L H ++ + S G G
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIP----QRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV 137
L +W L T T + H KDVL + +S+D ++SGS D + +W+
Sbjct: 109 TLRLWDLTTGTT------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Query: 138 LQILD-AHFHYVQGVAWDPLSK--YVASLSSDRTCRIY--ANRPTKSKGVEKMNYVCQHV 192
+ D +H +V V + P S + S D+ +++ AN K+ + Y+
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 222
Query: 193 ITKAGQHSTDDSKSAKNHLF------HDETLPS--FFRRLAWSPDGSFLLVPAG-SYKIS 243
++ G K + L+ H TL L +SP+ +L G S KI
Sbjct: 223 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282
Query: 244 SMSESI 249
+ I
Sbjct: 283 DLEGKI 288
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP--- 74
T+ P L A+GG D +W +N G+ + G IN L FSP
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----------GGDIINALCFSPNRY 269
Query: 75 --C---GGELIIW----KLHTTETGQAWKVLKNLS-FHRKDVLDLQWSTDGAFLLSGSVD 124
C G + IW K+ E Q +V+ S L WS DG L +G D
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 125 NSCIIWDVNKGS 136
N +W V G+
Sbjct: 328 NLVRVWQVTIGT 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
+I+WKL ET + L H V D+ S+DG F LSGS D + +WD+ G+
Sbjct: 40 IIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT 98
Query: 139 QILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+ H V VA+ ++ + S S D+T +++
Sbjct: 99 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK VL++ F + + +G D IK+W + Y H ++ +RF
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLW--------NTLGVCKYTVQDESHSEWVSCVRF 156
Query: 73 SPCGGELIIWKLHTTETGQAW-----KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSC 127
SP II + + W K+ N H + + S DG+ SG D
Sbjct: 157 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 216
Query: 128 IIWDVNKGSVLQILDA 143
++WD+N+G L LD
Sbjct: 217 MLWDLNEGKHLYTLDG 232
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 33/246 (13%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------G 77
++ + D I +W + E IP Q +L H ++ + S G G
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIP----QRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV 137
L +W L T T + H KDVL + +S+D ++SGS D + +W+
Sbjct: 86 TLRLWDLTTGTT------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Query: 138 LQILD-AHFHYVQGVAWDPLSK--YVASLSSDRTCRIY--ANRPTKSKGVEKMNYVCQHV 192
+ D +H +V V + P S + S D+ +++ AN K+ + Y+
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 199
Query: 193 ITKAGQHSTDDSKSAKNHLF------HDETLPS--FFRRLAWSPDGSFLLVPAG-SYKIS 243
++ G K + L+ H TL L +SP+ +L G S KI
Sbjct: 200 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 259
Query: 244 SMSESI 249
+ I
Sbjct: 260 DLEGKI 265
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP--- 74
T+ P L A+GG D +W +N G+ + G IN L FSP
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----------GGDIINALCFSPNRY 246
Query: 75 --C---GGELIIW----KLHTTETGQAWKVLKNLS-FHRKDVLDLQWSTDGAFLLSGSVD 124
C G + IW K+ E Q +V+ S L WS DG L +G D
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 125 NSCIIWDVNKGS 136
N +W V G+
Sbjct: 305 NLVRVWQVTIGT 316
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 66 AINILRFSP--CGGELII----------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWST 113
+I L FSP G +I W++ ++GQ + K H VLD+ WS
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQT--IPKAQQMHTGPVLDVCWSD 96
Query: 114 DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKY--VASLSSDRTCRI 171
DG+ + + S D + +WD++ +QI H V+ + W Y V + S D+T +
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 172 YANRPTKSKGVEKM--NYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224
+ R + V ++ C VI +T + ++ E PS FRR+
Sbjct: 156 WDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLI---VYQLENQPSEFRRI 207
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 28 LATGGADYDIKIWLINSGEKQKKIPTASYQ-NSLSYHGSAINILRFSPCGGELIIWKLHT 86
LA G + ++++W + ++ + + + S + SLS++ IL G + H
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHI-----HH 133
Query: 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV----LQILD 142
+ A + LS H ++V L+W+ DG L SG DN +W G LQ
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193
Query: 143 AHFHYVQGVAWDPLSKYVASL---SSDRTCRIY 172
H V+ VAW P V + +SDR RI+
Sbjct: 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 118 LLSGSVDNSCIIWDVNKGSVLQILDAH--FHYVQGVAWDPLSKYVASLSSDRTCRIY--- 172
+L+ ++DNS +W + G +LQ+L Y+ VAW Y+A +S +++
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 173 -----ANRPTKSKGVEKMNYVCQHVI---TKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224
N + S V +++ +++ +++G D + A++H+ L
Sbjct: 98 QQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 156
Query: 225 AWSPDGSFL 233
W+PDG L
Sbjct: 157 RWAPDGRHL 165
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
++ V L + P LA+GG D + +W GE +P ++ + H A+ + +
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPLQTF----TQHQGAVKAVAW 204
Query: 73 SPCGGELIIWKLHTTETG--------QAWKVLKNLSFHRKD----VLDLQWSTDGAFLLS 120
P W+ + TG + W V D V + WS L+S
Sbjct: 205 CP-------WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257
Query: 121 GS--VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
G N +IW + + L H V + P VAS ++D T R++
Sbjct: 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 112 STDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171
S G ++SGS DN+ I+WDV + L IL H + +D K S S D T RI
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 172 Y 172
+
Sbjct: 337 W 337
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQG--- 150
K L LS H V L+++ G L+SGS D + +WD+ KG + + H V+
Sbjct: 153 KFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 151 VAWDPLSKYVASLSSDRTCRIY 172
V + + KY+ + S D T ++
Sbjct: 212 VEYKNI-KYIVTGSRDNTLHVW 232
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKI---PTASYQNSLS----YHGSAIN 68
V+++D + A+ D I++W + +G++ K I P ++ + S Y + +
Sbjct: 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH 142
Query: 69 ILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128
+ + + G E+G K +L K +L + +S DG +L SG++D
Sbjct: 143 VGKVNIFG----------VESG---KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 129 IWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
I+D+ G +L L+ H ++ + + P S+ + + S D +IY
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 7 QINWHDTKPV--LTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHG 64
QI D PV TL F P S LATG + I+ + SG+K+ SL G
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY---------SLDTRG 164
Query: 65 SAINILRFSPCGGELI------IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFL 118
I + +SP G L I + TG K+L L H + L +S D L
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 119 LSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155
++ S D I+DV ++ L H +V VA+ P
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 56/209 (26%)
Query: 103 RKDVLDLQWSTDGAFL--------------LSGSVDNSCIIWDVNKGSVLQILDAHFHYV 148
R + LDLQWS +G L S S+D +WD+ G ++ +DA
Sbjct: 66 RDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA 125
Query: 149 QGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAK 208
+A+ P S+Y+A+ + I+ GVE + ++S D
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIF--------GVE----------SGKKEYSLD------ 161
Query: 209 NHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLP 268
T F +A+SPDG +L A + IN I + K L L
Sbjct: 162 -------TRGKFILSIAYSPDGKYLASGA-------IDGIINIFDIATGKLLHT----LE 203
Query: 269 GASKPVVAVRFCPLAFNLRESNSAGFFKL 297
G + P+ ++ F P + L ++ G+ K+
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 47/173 (27%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
TK VL++ F P + + +GG D +++W + GE + S H ++ +RF
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTL-------SRGAHTDWVSCVRF 160
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
SP S D ++SG DN +WD+
Sbjct: 161 SP-------------------------------------SLDAPVIVSGGWDNLVKVWDL 183
Query: 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKM 185
G ++ L H +YV V P AS D R++ TK + + +M
Sbjct: 184 ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKGEALSEM 234
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 97 KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL 156
+ L H V D+ S +G F +S S D+S +W++ G H V VA+ P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 157 SKYVASLSSDRTCRIY 172
++ + S D R++
Sbjct: 121 NRQIVSGGRDNALRVW 136
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 37/140 (26%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T V ++ P L A+ D ++W + GE ++ G+ IN + F
Sbjct: 196 TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA----------GAPINQICF 245
Query: 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVL------------------DLQWSTD 114
SP W TE G ++ KD++ + WS D
Sbjct: 246 SP----NRYWMCAATEKG-----IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSAD 296
Query: 115 GAFLLSGSVDNSCIIWDVNK 134
G+ L SG DN +W V++
Sbjct: 297 GSTLYSGYTDNVIRVWGVSE 316
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 56 YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNLSFHRKDVLDLQWSTD 114
+ SL+ N+L + LI WKL T Q + V +++ H V D + D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
GA+ LS S D + +WDV G Q H V V D + + S S D+T +++
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
L +W + T ET Q H+ DV+ + + ++SGS D + +W + KG L
Sbjct: 89 LRLWDVATGETYQ------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 141
Query: 139 QILDAHFHYVQGV 151
L H +V V
Sbjct: 142 ATLLGHNDWVSQV 154
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 38/134 (28%)
Query: 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG 77
TL P L+A+ G D +I +W + + +K + T S Q+ + L FSP
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQDE-------VFSLAFSPNR- 249
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLD-------------------LQWSTDGAFL 118
W T TG +K S + ++D L WS DG L
Sbjct: 250 ---YWLAAATATG-----IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 119 LSGSVDNSCIIWDV 132
+G DN +W V
Sbjct: 302 FAGYTDNVIRVWQV 315
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 112 STDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171
S G ++SGS DN+ I+WDV + L IL H + +D K S S D T RI
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 172 Y 172
+
Sbjct: 337 W 337
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQG--- 150
K L LS H V L+++ G L+SGS D + +WD+ KG + + H V+
Sbjct: 153 KFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 151 VAWDPLSKYVASLSSDRTCRIY 172
V + + KY+ + S D T ++
Sbjct: 212 VEYKNI-KYIVTGSRDNTLHVW 232
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 56 YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNLSFHRKDVLDLQWSTD 114
+ SL+ N+L + LI WKL T Q + V +++ H V D + D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
GA+ LS S D + +WDV G Q H V V D + + S S D+T +++
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
L +W + T ET Q H+ DV+ + + ++SGS D + +W + KG L
Sbjct: 89 LRLWDVATGETYQ------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 141
Query: 139 QILDAHFHYVQGV 151
L H +V V
Sbjct: 142 ATLLGHNDWVSQV 154
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 56 YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNLSFHRKDVLDLQWSTD 114
+ SL+ N+L + LI WKL T Q + V +++ H V D + D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
GA+ LS S D + +WDV G Q H V V D + + S S D+T +++
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
L +W + T ET Q H+ DV+ + + ++SGS D + +W + KG L
Sbjct: 89 LRLWDVATGETYQ------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 141
Query: 139 QILDAHFHYVQGV 151
L H +V V
Sbjct: 142 ATLLGHNDWVSQV 154
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 38/134 (28%)
Query: 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG 77
TL P L+A+ G D +I +W + + +K + T S Q+ + L FSP
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQDE-------VFSLAFSPNR- 249
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLD-------------------LQWSTDGAFL 118
W T TG +K S + ++D L WS DG L
Sbjct: 250 ---YWLAAATATG-----IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTL 301
Query: 119 LSGSVDNSCIIWDV 132
+G DN +W V
Sbjct: 302 FAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 56 YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNLSFHRKDVLDLQWSTD 114
+ SL+ N+L + LI WKL T Q + V +++ H V D + D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
GA+ LS S D + +WDV G Q H V V D + + S S D+T +++
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
L +W + T ET Q H+ DV+ + + ++SGS D + +W + KG L
Sbjct: 89 LRLWDVATGETYQ------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 141
Query: 139 QILDAHFHYVQGV 151
L H +V V
Sbjct: 142 ATLLGHNDWVSQV 154
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 38/134 (28%)
Query: 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG 77
TL P L+A+ G D +I +W + + +K + T S Q+ + L FSP
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQDE-------VFSLAFSPNR- 249
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLD-------------------LQWSTDGAFL 118
W T TG +K S + ++D L WS DG L
Sbjct: 250 ---YWLAAATATG-----IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 119 LSGSVDNSCIIWDV 132
+G DN +W V
Sbjct: 302 FAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 56 YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNLSFHRKDVLDLQWSTD 114
+ SL+ N+L + LI WKL T Q + V +++ H V D + D
Sbjct: 13 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTAD 70
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
GA+ LS S D + +WDV G Q H V V D + + S S D+T +++
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138
L +W + T ET Q H+ DV+ + + ++SGS D + +W + KG L
Sbjct: 83 LRLWDVATGETYQ------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 135
Query: 139 QILDAHFHYVQGV 151
L H +V V
Sbjct: 136 ATLLGHNDWVSQV 148
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 38/134 (28%)
Query: 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG 77
TL P L+A+ G D +I +W + + +K + T S Q+ + L FSP
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLAA---KKAMYTLSAQDE-------VFSLAFSPNR- 243
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLD-------------------LQWSTDGAFL 118
W T TG +K S + ++D L WS DG L
Sbjct: 244 ---YWLAAATATG-----IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 295
Query: 119 LSGSVDNSCIIWDV 132
+G DN +W V
Sbjct: 296 FAGYTDNVIRVWQV 309
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 39/182 (21%)
Query: 21 FHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI 80
F P LATG D I+IW I + +KI L H I L + P G +L+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI----ENRKIVMI-----LQGHEQDIYSLDYFPSGDKLV 181
Query: 81 ---------IWKLHTTETGQAWKVLKNLSFHRKD-VLDLQWS-TDGAFLLSGSVDNSCII 129
IW L TGQ +L+ +D V + S DG ++ +GS+D + +
Sbjct: 182 SGSGDRTVRIWDL---RTGQC-----SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 130 WDVNKGSVLQILDA-------HFHYVQGVAWDPLSKYVASLSSDRTCRIY----ANRPTK 178
WD G +++ LD+ H V V + + V S S DR+ +++ AN +
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 179 SK 180
SK
Sbjct: 294 SK 295
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 39/178 (21%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC 75
+ +LD+ P L +G D ++IW + +G+ + + + SP
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAVSPG 217
Query: 76 GGELI----------IWKLHTTETGQAWKVL----KNLSFHRKDVLDLQWSTDGAFLLSG 121
G+ I +W +ETG + L ++ + H+ V + ++ DG ++SG
Sbjct: 218 DGKYIAAGSLDRAVRVWD---SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274
Query: 122 SVDNSCIIWDV------------NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167
S+D S +W++ N G+ H +V VA +Y+ S S DR
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVA 152
H+ VL + + + ++LSGS D + WD G+ L +L H + V VA
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 56 YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNLSFHRKDVLDLQWSTD 114
+ SL+ N+L + LI WKL T Q + V +++ H V D + D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
GA+ LS S D + +WDV G Q H V V D + + S S D+T +++
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 28/123 (22%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86
+A GG D + ++ + SG ++ T H + I + FS G L+
Sbjct: 462 FVAVGGQDSKVHVYKL-SGASVSEVKTI-------VHPAEITSVAFSNNGAFLV------ 507
Query: 87 TETGQAWKVL-------------KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN 133
T Q+ KV+ + +FH V + WS D L +GS+DNS I+W++N
Sbjct: 508 -ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Query: 134 KGS 136
K S
Sbjct: 567 KPS 569
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILD------- 142
G +K H K V ++++ DG+ S D + ++++ G+ + +
Sbjct: 177 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 143 AHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
AH V G+ W P +AS S+D+T +I+
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 52 PTASYQNSLSYHGSAINILRFSPCG---------GELIIWK-LHTTETGQAWK-VLKNLS 100
P ++++ H ++ +R++P G G ++++ + T+TG LKN++
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 101 FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132
H V L WS DG + S S D + IW+V
Sbjct: 238 -HSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 111/266 (41%), Gaps = 38/266 (14%)
Query: 14 KPVLTLDFHPISGLLATGGADYDIKIWLIN-SGEKQKKIPTAS----YQNSLSYHGSAIN 68
K + ++ + P + LLA G D + IW S ++ ++ + ++N + + +
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 69 ILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128
+ C + +W T E+G+ ++ + L H +DV + W A L S S D++
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 129 IWD--VNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMN 186
IW + + +L+ H +G W SSD K++GV ++
Sbjct: 179 IWKDYDDDWECVAVLNGH----EGTVW----------SSD---------FDKTEGVFRLC 215
Query: 187 YVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRR----LAWSPDGSFLLVPAGSYKI 242
+ ++ DD + + + LP +R +AW +G L+ G+ +
Sbjct: 216 SGSDDSTVRVWKYMGDDEDDQQEWVC-EAILPDVHKRQVYNVAWGFNG--LIASVGADGV 272
Query: 243 SSMSESINSAY-IFSRKDLSRPALQL 267
++ E ++ + +F+++ L ++
Sbjct: 273 LAVYEEVDGEWKVFAKRALCHGVYEI 298
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 316 TESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELG 365
T + +AI+ G H + +AWSN+ YLA S+D + +E DE G
Sbjct: 94 TFEMDLLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWI--WETDESG 140
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 13 TKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKI--PTASYQNS------LSYH 63
T PVL + + P + ++A+G D + +W I G + P + + +++H
Sbjct: 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 64 GSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV 123
+A N+L + C +++W + T G A L H + + WS DGA + +
Sbjct: 141 PTAQNVLLSAGCDNVILVWDVGT---GAAVLTL-GPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 124 DNSCIIWDVNKGSVL 138
D + + KG+V+
Sbjct: 197 DKRVRVIEPRKGTVV 211
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 98 NLSFHRKDVLDLQW-STDGAFLLSGSVDNSCIIWDVNKGSVLQIL--DAHFHYVQGVAWD 154
L H K V + W T LLS DN ++WDV G+ + L D H + V W
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 155 PLSKYVASLSSDRTCRIYANR 175
+ + D+ R+ R
Sbjct: 186 RDGALICTSCRDKRVRVIEPR 206
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 24 ISGLLATGGADYDIKIWLINSGEKQKKIPTAS---YQNSLSYHGSAINILRFSPCGG--- 77
+SG L + D+ + +W IN+G K+ KI A +S A ++L S G
Sbjct: 191 LSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 78 --ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLL-SGSVDNSCIIWDV-N 133
+L+IW + T + + + H +V L ++ F+L +GS D + +WD+ N
Sbjct: 251 DQKLMIWDTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Query: 134 KGSVLQILDAHFHYVQGVAWDPLSKYV-ASLSSDRTCRIY 172
L ++H + V W P ++ + AS +DR ++
Sbjct: 308 LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 28 LATGGADYDIKIWLINSGEK----QKKIPTASYQNSLSYHGSAINILRF--SPCGGELII 81
L TG D +W + +G++ + P+ + LS +++N F C + +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL 141
W L T + ++ H D+ +++ DG +GS D +C ++D+ G LQ+
Sbjct: 233 WDLRITS-----RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287
Query: 142 D 142
+
Sbjct: 288 N 288
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154
+ L H V L W+ + +++S S D I+W+ + H +V A+
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 155 PLSKYVASLSSDRTCRIY 172
P + VA D C I+
Sbjct: 118 PNGQSVACGGLDSACSIF 135
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 118 LLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL--------SSDRTC 169
L++GS D +C++WDV G + I + F G D LS + SL S D T
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEF--PSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 170 RIYANRPT 177
R++ R T
Sbjct: 231 RLWDLRIT 238
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 28/171 (16%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CG--G 77
LLATG +D +K+W +N E +N++ H +++N RFSP C G
Sbjct: 721 LLATGSSDCFLKLWDLNQKE---------CRNTMFGHTNSVNHCRFSPDDKLLASCSADG 771
Query: 78 ELIIWKLHTTETGQAWKV---LKNLSFHRKD----VLDLQWSTDGAFLLSGSVDNSCIIW 130
L +W + ++ V NL ++D V WS DGA ++ + N ++
Sbjct: 772 TLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA-KNKIFLF 830
Query: 131 DVNKGSVL-QILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSK 180
D++ +L +I H +Q + P ++A ++ + C N ++SK
Sbjct: 831 DIHTSGLLGEIHTGHHSTIQYCDFSP-QNHLAVVALSQYCVELWNTDSRSK 880
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 71 RFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIW 130
R + CG + + ++ ETG+ L + H +VL +STD F+ + SVD IW
Sbjct: 635 RIASCGADKTL-QVFKAETGEK---LLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 131 DVNKGSVLQILDAH 144
+ G ++ D H
Sbjct: 691 NSMTGELVHTYDEH 704
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CGG 77
S LLATG + +I+IW +++GE S + + + HG + L FSP GG
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT-HGGWVTDLCFSPDGKMLISAGG 1203
Query: 78 ELIIWKLHTTETGQAW 93
+ W + T E+ Q +
Sbjct: 1204 YIKWWNVVTGESSQTF 1219
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 20/199 (10%)
Query: 28 LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87
+A+ GAD ++++ +GEK +I + + + ++ IW T
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLL--SGSVDNSCIIWDVNKGSVLQILDAHF 145
E ++ H + V ++ LL +GS D +WD+N+ + H
Sbjct: 696 E------LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHT 749
Query: 146 HYVQGVAWDPLSKYVASLSSDRTCRIY-ANRPTKSKGVEKMNYVC--------QHVITKA 196
+ V + P K +AS S+D T +++ A + K + + VI K
Sbjct: 750 NSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKC 809
Query: 197 GQHSTDDSK---SAKNHLF 212
S D ++ +AKN +F
Sbjct: 810 CSWSADGARIMVAAKNKIF 828
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQ 149
G K +K L+ H + + ++++ +G L S S D+S +W G L LD H +
Sbjct: 20 GSHMKAIK-LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW 78
Query: 150 GVAWDPLSKYVASLSSDRTCRIY 172
+ D +KY + S+D + +++
Sbjct: 79 SIDVDCFTKYCVTGSADYSIKLW 101
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 32/176 (18%)
Query: 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
T + ++D + TG ADY IK+W +++G+ A++++ + + + F
Sbjct: 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ-----CVATWKSPV-----PVKRVEF 123
Query: 73 SPCG--------------GELIIWKLHTTETGQAWKVLKNLSFHR---KDVLDLQ----W 111
SPCG G + I+++ + H+ + LD W
Sbjct: 124 SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183
Query: 112 STDGAFLLSGSVDNSCIIWDV-NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166
ST G ++++G D +DV N + +D H + + + P Y + S D
Sbjct: 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL 141
K+ + ++ + ++ H K + D+Q+S D + ++ S D + + DV S LQ+L
Sbjct: 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV---STLQVL 253
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 24 ISGLLATGGADYDIKIWLINSGEKQKKIPTAS---YQNSLSYHGSAINILRFSPCGG--- 77
+SG L + D+ + +W IN+G K+ KI A +S A ++L S G
Sbjct: 191 LSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 78 --ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLL-SGSVDNSCIIWDV-N 133
+L IW + T + + + H +V L ++ F+L +GS D + +WD+ N
Sbjct: 251 DQKLXIWDTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Query: 134 KGSVLQILDAHFHYVQGVAWDPLSKYV-ASLSSDRTCRIY 172
L ++H + V W P ++ + AS +DR ++
Sbjct: 308 LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC 75
V ++ F P + + + GA+ +IK+W I + K +A +N H ++ +R+SP
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILG---ECKFSSAEKEN----HSDWVSCVRYSPI 173
Query: 76 -------------------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGA 116
G L +W + +++ H +V L S +G
Sbjct: 174 MKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYTFKAHESNVNHLSISPNGK 226
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRP 176
++ +G D +IWD+ + Q + +A++P ++VA + +D+ +I+ N
Sbjct: 227 YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIF-NLM 284
Query: 177 TKSK 180
T+SK
Sbjct: 285 TQSK 288
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 114 DGAFLLSGSVDNSCIIWDVNK-------GSVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166
D L+SGS D + +IW + + G + L H H+V +A + + S S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 167 RTCRIYANR 175
+T R++ R
Sbjct: 98 KTLRLWDLR 106
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 96 LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155
L L H V LQ+ DG ++SGS+D S +WDV G+ + L H G+ +
Sbjct: 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL 327
Query: 156 LSKYVASLSSDRTCRIY 172
+ S ++D T +I+
Sbjct: 328 KDNILVSGNADSTVKIW 344
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 26/153 (16%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF-------SPCGGEL 79
++ +G D +K+W +GE ++L H S + + L
Sbjct: 171 IIISGSTDRTLKVWNAETGE---------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 221
Query: 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQ 139
+W + ETGQ VL H V +Q+ DG ++SG+ D +WD + L
Sbjct: 222 RVWDI---ETGQCLHVLMG---HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 140 ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
L H + V + +D + +V S S D + R++
Sbjct: 274 TLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVW 304
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK-YVASLSSDRTCRIY 172
L+SG+ D++ IWD+ G LQ L + V +K +V + S D T +++
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 37/163 (22%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CG--G 77
LLATG D+ +K+W +N E +N++ H +++N RFSP C G
Sbjct: 715 LLATGSNDFFLKLWDLNQKE---------CRNTMFGHTNSVNHCRFSPDDELLASCSADG 765
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKD--------VLDLQWSTDGAFLLSGSVDNSCII 129
L +W + + ++ V K +D V WS DG ++ + N ++
Sbjct: 766 TLRLWDVRSANERKSINV-KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLL 823
Query: 130 WDVNKGSVL-QILDAHFHYVQGVAWDP--------LSKYVASL 163
+D++ +L +I H +Q + P LS+Y L
Sbjct: 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 54 ASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST 113
A Y S G R + CG + + ++ ETG+ L ++ H +VL +S+
Sbjct: 617 AVYHACFSQDGQ-----RIASCGADKTL-QVFKAETGEK---LLDIKAHEDEVLCCAFSS 667
Query: 114 DGAFLLSGSVDNSCIIWDVNKGSVLQILDAH 144
D +++ + S D IWD G ++ D H
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEH 698
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CGGEL 79
LLATG + +I+IW ++ G+ S + + HG + + FSP GG L
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYL 1200
Query: 80 IIWKLHTTETGQAW 93
W + T ++ Q +
Sbjct: 1201 KWWNVATGDSSQTF 1214
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Query: 28 LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87
+A+ GAD ++++ +GEK I + S + + ++ IW +
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---S 686
Query: 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLL--SGSVDNSCIIWDVNKGSVLQILDAHF 145
TG K++ H + V ++ LL +GS D +WD+N+ + H
Sbjct: 687 ATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743
Query: 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSK 180
+ V + P + +AS S+D T R++ R +
Sbjct: 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGS 65
L I H+ + VL F +AT AD +KIW +G+ S Q + + +
Sbjct: 651 LDIKAHEDE-VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709
Query: 66 AINILRFSPCGGELI--IWKLHTTETGQAWKVLKNLSF-HRKDVLDLQWSTDGAFLLSGS 122
N L + + +W L+ E +N F H V ++S D L S S
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKEC-------RNTMFGHTNSVNHCRFSPDDELLASCS 762
Query: 123 VDNSCIIWDV 132
D + +WDV
Sbjct: 763 ADGTLRLWDV 772
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 26/182 (14%)
Query: 1 MKGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSL 60
+ G T QI++ V P +A G D IKI ++P +S
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI---------IELPNNRVFSSG 999
Query: 61 SYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFHRKDVLDLQW 111
H A+ ++F+ G LI +W T + L H++ V D +
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-------YVFLQAHQETVKDFRL 1052
Query: 112 STDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171
D LLS S D + +W+V G + + H V A + +S S+D+T +I
Sbjct: 1053 LQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 172 YA 173
++
Sbjct: 1112 WS 1113
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 37/163 (22%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CG--G 77
LLATG D+ +K+W +N E +N++ H +++N RFSP C G
Sbjct: 722 LLATGSNDFFLKLWDLNQKE---------CRNTMFGHTNSVNHCRFSPDDELLASCSADG 772
Query: 78 ELIIWKLHTTETGQAWKVLKNLSFHRKD--------VLDLQWSTDGAFLLSGSVDNSCII 129
L +W + + ++ V K +D V WS DG ++ + N ++
Sbjct: 773 TLRLWDVRSANERKSINV-KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLL 830
Query: 130 WDVNKGSVL-QILDAHFHYVQGVAWDP--------LSKYVASL 163
+D++ +L +I H +Q + P LS+Y L
Sbjct: 831 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 54 ASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST 113
A Y S G R + CG + + ++ ETG+ L ++ H +VL +S+
Sbjct: 624 AVYHACFSQDGQ-----RIASCGADKTL-QVFKAETGEK---LLDIKAHEDEVLCCAFSS 674
Query: 114 DGAFLLSGSVDNSCIIWDVNKGSVLQILDAH 144
D +++ + S D IWD G ++ D H
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEH 705
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 27 LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CGGEL 79
LLATG + +I+IW ++ G+ S + + HG + + FSP GG L
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYL 1207
Query: 80 IIWKLHTTETGQAW 93
W + T ++ Q +
Sbjct: 1208 KWWNVATGDSSQTF 1221
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Query: 28 LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87
+A+ GAD ++++ +GEK I + S + + ++ IW +
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---S 693
Query: 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLL--SGSVDNSCIIWDVNKGSVLQILDAHF 145
TG K++ H + V ++ LL +GS D +WD+N+ + H
Sbjct: 694 ATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 750
Query: 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSK 180
+ V + P + +AS S+D T R++ R +
Sbjct: 751 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGS 65
L I H+ + VL F +AT AD +KIW +G+ S Q + + +
Sbjct: 658 LDIKAHEDE-VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 716
Query: 66 AINILRFSPCGGELI--IWKLHTTETGQAWKVLKNLSF-HRKDVLDLQWSTDGAFLLSGS 122
N L + + +W L+ E +N F H V ++S D L S S
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKEC-------RNTMFGHTNSVNHCRFSPDDELLASCS 769
Query: 123 VDNSCIIWDV 132
D + +WDV
Sbjct: 770 ADGTLRLWDV 779
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 26/182 (14%)
Query: 1 MKGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSL 60
+ G T QI++ V P +A G D IKI ++P +S
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI---------IELPNNRVFSSG 1006
Query: 61 SYHGSAINILRFSPCGGELI---------IWKLHTTETGQAWKVLKNLSFHRKDVLDLQW 111
H A+ ++F+ G LI +W T + L H++ V D +
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-------YVFLQAHQETVKDFRL 1059
Query: 112 STDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171
D LLS S D + +W+V G + + H V A + +S S+D+T +I
Sbjct: 1060 LQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 172 YA 173
++
Sbjct: 1119 WS 1120
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 63 HGSAINILRFSPCGGELII-------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG 115
HG+AIN L+F P L++ +L +T + + HR +VL + G
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 209
Query: 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY 147
++S +D+S +W +N ++ + + Y
Sbjct: 210 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 241
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 13 TKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKI--PTASYQNS------LSYH 63
T PVL + + P + ++A+G D + +W I G + P + + +++H
Sbjct: 81 TAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 64 GSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV 123
+A N+L + +++W + T G A L H + + WS DGA + +
Sbjct: 141 PTAQNVLLSAGXDNVILVWDVGT---GAAVLTL-GPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 124 DNSCIIWDVNKGSVL 138
D + + KG+V+
Sbjct: 197 DKRVRVIEPRKGTVV 211
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 98 NLSFHRKDVLDLQW-STDGAFLLSGSVDNSCIIWDVNKGSVLQIL--DAHFHYVQGVAWD 154
L H K V + W T LLS DN ++WDV G+ + L D H + V W
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 155 PLSKYVASLSSDRTCRIYANR 175
+ + D+ R+ R
Sbjct: 186 RDGALICTSCRDKRVRVIEPR 206
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 96 LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155
+ L H +V L W +DG L SG DN IWD H V+ VAW P
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 106 VLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154
V ++WS DG+FL G + I+DV + L+ + H V ++W+
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 63 HGSAINILRFSPCGGELII-------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG 115
HG+AIN L+F P L++ +L +T + + HR +VL + G
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173
Query: 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY 147
++S +D+S +W +N ++ + + Y
Sbjct: 174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 63 HGSAINILRFSPCGGELII-------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG 115
HG+AIN L+F P L++ +L +T + + HR +VL + G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY 147
++S +D+S +W +N ++ + + Y
Sbjct: 173 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 204
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 63 HGSAINILRFSPCGGELII-------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG 115
HG+AIN L+F P L++ +L +T + + HR +VL + G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY 147
++S +D+S +W +N ++ + + Y
Sbjct: 173 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 204
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 19 LDFHP-ISGLLATGGADYDIKIWLINSGEKQKKIPTA--------SYQNSLSYHGSAINI 69
L ++P +SG L + D+ I +W I++ K+ K+ A + +S+H ++
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 70 LRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLL-SGSVDNSCI 128
+L+IW + T K ++ H +V L ++ F+L +GS D +
Sbjct: 243 FGSVADDQKLMIWDTRSNNTS---KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 129 IWDV-NKGSVLQILDAHFHYVQGVAWDPLSKYV-ASLSSDRTCRIY 172
+WD+ N L ++H + V W P ++ + AS +DR ++
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 63 HGSAINILRFSPCGGELII-------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG 115
HG+AIN L+F P L++ +L +T + + HR +VL + G
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 168
Query: 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY 147
++S +D+S +W +N ++ + + Y
Sbjct: 169 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 200
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 99 LSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKG-------SVLQILDAHFHYVQG 150
L H+K+ L W+ + +LLS S D++ +WD+N I H V+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 151 VAWDPLSKYV-ASLSSDRTCRIYANR 175
VAW L + + S++ D+ I+ R
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTR 264
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 99 LSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKG-------SVLQILDAHFHYVQG 150
L H+K+ L W+ + +LLS S D++ +WD+N I H V+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 151 VAWDPLSKYV-ASLSSDRTCRIYANR 175
VAW L + + S++ D+ I+ R
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTR 262
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 72 FSPCG-GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIW 130
FS C G + +W LH +++ H + S DG L +G +DN+ W
Sbjct: 157 FSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 131 DVNKGSVLQILDAHFHYVQGVAWDPLSKYVA-SLSSDRTCRIYANRPTK 178
D+ +G LQ D + + + P +++A + S ++ N+P K
Sbjct: 211 DLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 99 LSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKG-------SVLQILDAHFHYVQG 150
L H+K+ L W+ + +LLS S D++ +WD+N I H V+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 151 VAWDPLSKYV-ASLSSDRTCRIYANR 175
VAW L + + S++ D+ I+ R
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTR 266
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 11 HDTKP----VLTLDFHPISGLLATGGADYDIKI 39
H KP VL+LD+HP S LLA G D+ +I
Sbjct: 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 2 KGGTLQINWHDTKP----VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQ 57
K G + H+ K V +D+ P S + T G D + +W + + +
Sbjct: 37 KSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 96
Query: 58 NSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFH-RKDVLDLQWSTDGA 116
+ A N +F+ G +I + E W V K++ R VL L W +
Sbjct: 97 RAARCVRWAPNEKKFAVGSGSRVI-SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155
Query: 117 FLLSGSVDNSCII 129
L +GS D C I
Sbjct: 156 LLAAGSCDFKCRI 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 11 HDTKP----VLTLDFHPISGLLATGGADYDIKI 39
H KP VL+LD+HP S LLA G D+ +I
Sbjct: 136 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 2 KGGTLQINWHDTKP----VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQ 57
K G + H+ K V +D+ P S + T G D + +W + + +
Sbjct: 37 KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 96
Query: 58 NSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFH-RKDVLDLQWSTDGA 116
+ A N +F+ G +I + E W V K++ R VL L W +
Sbjct: 97 RAARCVRWAPNEKKFAVGSGSRVI-SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155
Query: 117 FLLSGSVDNSCII 129
L +GS D C I
Sbjct: 156 LLAAGSCDFKCRI 168
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+++ GS D +++ N G + +AH Y++ +A P YV S S D T +++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+++ GS D +++ N G + +AH Y++ +A P YV S S D T +++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+++ GS D +++ N G + +AH Y++ +A P YV S S D T +++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172
+++ GS D +++ N G + +AH Y++ +A P YV S S D T +++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 60/177 (33%)
Query: 30 TGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP--------CG--GEL 79
+GG D+ +K+W ++ QK + S + H S +N + P CG G +
Sbjct: 156 SGGKDFSVKVWDLS----QKAV-----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 80 IIWKLH--------------TTETGQAWKVLKNLSF------------------------ 101
++W T T W K+ +F
Sbjct: 207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266
Query: 102 -HRKDVLDLQWSTDGA-FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL 156
H +++ L +S + FL S S D + + D + V + L +H +V GVAW PL
Sbjct: 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPL 322
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 91 QAWKVLKNLSF---------HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL 141
+ W++L+ S H V L +DG +SG D S +WD+++ +VL+
Sbjct: 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177
Query: 142 DAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVI 193
+AH V VA P K LS RI K K ++++ I
Sbjct: 178 NAHSSEVNCVAACP-GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI 228
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 213 HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASK 272
++E + S + L WSP+G+FL +Y + +E Y F S +LQ P +
Sbjct: 165 YEEEVFSAYSALWWSPNGTFL-----AYAQFNDTEVPLIEYSF----YSDESLQYPKTVR 215
Query: 273 PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAA 332
P E+ + FF + R + A++ S I VPP ++L G HY
Sbjct: 216 -------IPYPKAGAENPTVKFFVVDTRTLSPNASVTSYQI-----VPPASVLIGDHY-- 261
Query: 333 ITDIAWSNNAR 343
+ + W R
Sbjct: 262 LCGVTWVTEER 272
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 63 HGSAINILRFSPCGGELII------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGA 116
H S I L+F P G LI K+ + + G + L HR V D+ G
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRATVTDIAIIDRGR 191
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILD 142
+LS S+D + +W+ G+ + +
Sbjct: 192 NVLSASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 63 HGSAINILRFSPCGGELII------WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGA 116
H S I L+F P G LI K+ + + G + L HR V D+ G
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRATVTDIAIIDRGR 194
Query: 117 FLLSGSVDNSCIIWDVNKGSVLQILD 142
+LS S+D + +W+ G+ + +
Sbjct: 195 NVLSASLDGTIRLWECGTGTTIHTFN 220
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 94 KVLKNLSFHRKDV--LDLQWSTDGAFLLSGSVDNSCIIWDV----NKGSVLQILDAHFHY 147
K L NL H+K V + L D FL + SVD + IWD+ K S L L H H
Sbjct: 241 KELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHP 298
Query: 148 VQGVAWDPLSKYVASLSSDRTCRIYA 173
V + P + + R+Y+
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 94 KVLKNLSFHRKDV--LDLQWSTDGAFLLSGSVDNSCIIWDV----NKGSVLQILDAHFHY 147
K L NL H+K V + L D FL + SVD + IWD+ K S L L H H
Sbjct: 242 KELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHP 299
Query: 148 VQGVAWDPLSKYVASLSSDRTCRIYA 173
V + P + + R+Y+
Sbjct: 300 VNAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 84/282 (29%)
Query: 15 PVLTLDF-HPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF 72
PV + + HP+ G +LA+ D + IW +G +K A H S++N + +
Sbjct: 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG-------HDSSVNSVCW 111
Query: 73 SP--------CG---GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWS---TDGAFL 118
+P CG G + + L T GQ W+V K + H + W+ G+ +
Sbjct: 112 APHDYGLILACGSSDGAISL--LTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVPGSLI 168
Query: 119 --------------LSGSVDNSCIIWDVNKGSVL---QILDAHFHYVQGVAWDPL----S 157
SG DN +W + Q L+AH +V+ VAW P +
Sbjct: 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228
Query: 158 KYVASLSSD-----RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF 212
+AS S D TC ++ K + K N V HV
Sbjct: 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV-------------------- 268
Query: 213 HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254
+WS + L V G K++ ES++ ++
Sbjct: 269 ------------SWSITANILAVSGGDNKVTLWKESVDGQWV 298
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 94 KVLKNLSFHRKDV--LDLQWSTDGAFLLSGSVDNSCIIWDV----NKGSVLQILDAHFHY 147
K L NL H+K V + L D FL + SVD + IWD+ K S L L H H
Sbjct: 241 KELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHP 298
Query: 148 VQGVAWDPLSKYVASLSSDRTCRIYA 173
V + P + + R+Y+
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group I222
pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
Length = 248
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 20/93 (21%)
Query: 336 IAWSNNARYLALSSQDGYCTLVEFENDELGI-------------PISLSGNKVSKDENKS 382
++ NAR +++ + G T EN E+ + PIS G K++ ENK+
Sbjct: 66 LSLKGNARDISVLGKKGVTTF-RIENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKT 124
Query: 383 PLVTKSED------MIIEASTNDKLVTAETKEP 409
++ ++I+A NDKL+ A K P
Sbjct: 125 EAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTP 157
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153
KV+K S DV+ D +S S D + D + G VL+ + H +V +
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233
Query: 154 DPLSKYVASLSSDRTCRIYA 173
P + + S DRT RI++
Sbjct: 234 LP-NGDIVSCGEDRTVRIWS 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,477,395
Number of Sequences: 62578
Number of extensions: 644514
Number of successful extensions: 1543
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 418
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)