Query 010051
Match_columns 519
No_of_seqs 697 out of 3963
Neff 11.8
Searched_HMMs 46136
Date Thu Mar 28 20:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8E-54 1.7E-58 356.3 30.0 316 8-402 110-475 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.4E-46 2.9E-51 313.2 25.4 284 2-358 146-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-46 3.2E-51 317.1 21.9 277 9-358 171-458 (459)
4 KOG0286 G-protein beta subunit 100.0 4.3E-41 9.3E-46 270.8 31.9 286 5-358 47-343 (343)
5 KOG0318 WD40 repeat stress pro 100.0 8.7E-40 1.9E-44 283.8 39.3 409 5-437 51-600 (603)
6 KOG0315 G-protein beta subunit 100.0 1.5E-40 3.3E-45 261.4 28.5 269 26-365 11-293 (311)
7 KOG0279 G protein beta subunit 100.0 4.8E-40 1E-44 263.1 30.6 295 8-405 10-311 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-41 8.3E-46 284.4 20.0 270 62-402 173-454 (459)
9 KOG0318 WD40 repeat stress pro 100.0 2.4E-37 5.2E-42 268.6 36.9 366 2-405 176-600 (603)
10 KOG0319 WD40-repeat-containing 100.0 2.2E-38 4.8E-43 286.0 30.4 398 11-442 103-580 (775)
11 KOG0273 Beta-transducin family 100.0 8.2E-38 1.8E-42 267.9 30.3 330 7-402 173-517 (524)
12 KOG0263 Transcription initiati 100.0 4.6E-39 9.9E-44 293.4 23.8 275 12-362 377-651 (707)
13 KOG0291 WD40-repeat-containing 100.0 3.4E-37 7.5E-42 278.9 34.5 318 12-402 264-606 (893)
14 KOG0279 G protein beta subunit 100.0 3.8E-37 8.2E-42 246.5 28.2 249 3-360 53-313 (315)
15 KOG0296 Angio-associated migra 100.0 5.8E-37 1.3E-41 254.5 29.9 330 3-402 54-392 (399)
16 KOG0295 WD40 repeat-containing 100.0 1.1E-37 2.4E-42 258.7 24.9 297 7-405 102-404 (406)
17 KOG0265 U5 snRNP-specific prot 100.0 3.7E-37 7.9E-42 249.1 25.8 285 6-403 40-333 (338)
18 KOG0284 Polyadenylation factor 100.0 2.4E-38 5.2E-43 266.3 19.1 275 13-360 96-380 (464)
19 KOG0285 Pleiotropic regulator 100.0 3.4E-37 7.4E-42 255.1 25.5 282 5-361 143-440 (460)
20 KOG0315 G-protein beta subunit 100.0 3.6E-36 7.8E-41 236.9 27.5 267 70-407 13-288 (311)
21 KOG0645 WD40 repeat protein [G 100.0 1.5E-35 3.3E-40 236.3 30.6 295 5-405 6-309 (312)
22 KOG0286 G-protein beta subunit 100.0 1.5E-35 3.2E-40 239.0 28.4 276 58-404 49-342 (343)
23 KOG0293 WD40 repeat-containing 100.0 3.6E-36 7.8E-41 253.6 23.9 288 4-361 215-514 (519)
24 KOG0291 WD40-repeat-containing 100.0 1.2E-33 2.5E-38 256.2 41.0 362 4-407 46-466 (893)
25 KOG0273 Beta-transducin family 100.0 7.2E-35 1.6E-39 249.9 29.8 271 13-360 235-523 (524)
26 KOG0306 WD40-repeat-containing 100.0 7.5E-34 1.6E-38 257.3 34.5 385 5-440 99-665 (888)
27 KOG0266 WD40 repeat-containing 100.0 2.2E-34 4.8E-39 270.8 32.0 284 10-360 156-454 (456)
28 KOG0282 mRNA splicing factor [ 100.0 6.3E-36 1.4E-40 257.4 19.0 280 6-358 207-503 (503)
29 KOG0319 WD40-repeat-containing 100.0 5.5E-34 1.2E-38 257.8 32.0 362 4-408 138-620 (775)
30 KOG0973 Histone transcription 100.0 5.8E-35 1.3E-39 276.0 25.7 333 7-373 7-368 (942)
31 cd00200 WD40 WD40 domain, foun 100.0 1.7E-33 3.6E-38 254.6 33.9 277 8-358 4-289 (289)
32 KOG0316 Conserved WD40 repeat- 100.0 4.7E-34 1E-38 223.2 24.5 289 4-406 8-298 (307)
33 PLN00181 protein SPA1-RELATED; 100.0 2.1E-33 4.5E-38 284.7 36.6 295 10-405 480-791 (793)
34 KOG1009 Chromatin assembly com 100.0 6.3E-34 1.4E-38 239.9 26.9 356 1-365 1-377 (434)
35 KOG0275 Conserved WD40 repeat- 100.0 5.9E-35 1.3E-39 239.0 19.7 287 7-358 207-507 (508)
36 KOG0276 Vesicle coat complex C 100.0 2E-34 4.3E-39 255.7 24.2 289 10-408 10-299 (794)
37 KOG0296 Angio-associated migra 100.0 2.1E-33 4.6E-38 233.4 27.4 301 3-360 96-398 (399)
38 KOG0263 Transcription initiati 100.0 4.2E-34 9.1E-39 261.1 22.7 248 96-408 371-650 (707)
39 KOG0285 Pleiotropic regulator 100.0 1.6E-33 3.4E-38 233.5 24.0 283 56-406 143-438 (460)
40 KOG0284 Polyadenylation factor 100.0 1.5E-34 3.3E-39 243.5 18.3 271 63-404 95-376 (464)
41 KOG0278 Serine/threonine kinas 100.0 2.7E-34 5.9E-39 226.5 18.2 280 6-363 7-300 (334)
42 KOG1407 WD40 repeat protein [F 100.0 9.4E-33 2E-37 219.2 25.9 279 9-401 16-295 (313)
43 KOG0292 Vesicle coat complex C 100.0 1.4E-32 3.1E-37 253.4 30.8 306 10-360 6-321 (1202)
44 KOG0283 WD40 repeat-containing 100.0 1.7E-33 3.7E-38 259.4 24.8 289 10-363 264-579 (712)
45 KOG0645 WD40 repeat protein [G 100.0 1.7E-32 3.6E-37 219.1 26.5 244 10-360 58-311 (312)
46 KOG1446 Histone H3 (Lys4) meth 100.0 8.2E-32 1.8E-36 220.5 30.6 290 8-360 9-303 (311)
47 KOG0306 WD40-repeat-containing 100.0 2.9E-32 6.3E-37 247.0 28.9 337 13-411 320-668 (888)
48 KOG0281 Beta-TrCP (transducin 100.0 6.6E-34 1.4E-38 234.9 15.8 280 12-410 196-480 (499)
49 KOG0313 Microtubule binding pr 100.0 4.1E-32 8.9E-37 226.9 24.4 279 8-360 100-418 (423)
50 KOG0295 WD40 repeat-containing 100.0 3.2E-32 6.9E-37 226.3 20.3 260 4-359 141-405 (406)
51 KOG0281 Beta-TrCP (transducin 100.0 3.9E-33 8.4E-38 230.4 14.2 234 6-362 230-479 (499)
52 KOG0266 WD40 repeat-containing 100.0 8E-31 1.7E-35 246.8 31.7 277 63-406 158-453 (456)
53 KOG0265 U5 snRNP-specific prot 100.0 1.2E-30 2.5E-35 211.6 25.9 283 94-435 38-334 (338)
54 KOG0292 Vesicle coat complex C 100.0 1.3E-31 2.8E-36 247.1 23.1 276 63-408 8-322 (1202)
55 KOG0294 WD40 repeat-containing 100.0 2.6E-30 5.7E-35 211.0 27.4 243 8-363 38-284 (362)
56 cd00200 WD40 WD40 domain, foun 100.0 4.4E-30 9.6E-35 232.1 31.9 275 59-404 4-288 (289)
57 KOG0772 Uncharacterized conser 100.0 3.4E-31 7.3E-36 230.0 23.0 302 8-360 162-487 (641)
58 KOG0282 mRNA splicing factor [ 100.0 4.8E-32 1.1E-36 233.6 17.6 280 55-404 205-502 (503)
59 KOG0643 Translation initiation 100.0 4.8E-30 1E-34 204.6 26.9 297 7-404 4-313 (327)
60 KOG0310 Conserved WD40 repeat- 100.0 3.3E-30 7.1E-35 222.7 25.8 272 14-361 27-310 (487)
61 KOG0299 U3 snoRNP-associated p 100.0 4.5E-30 9.7E-35 220.2 25.6 296 6-396 135-443 (479)
62 KOG1408 WD40 repeat protein [F 100.0 8.3E-30 1.8E-34 230.0 28.5 282 77-408 346-714 (1080)
63 KOG0640 mRNA cleavage stimulat 100.0 2.5E-30 5.4E-35 210.7 21.6 293 7-359 106-425 (430)
64 KOG0268 Sof1-like rRNA process 100.0 2.9E-31 6.3E-36 220.5 15.8 278 8-362 61-347 (433)
65 KOG0293 WD40 repeat-containing 100.0 4.5E-30 9.8E-35 217.0 22.7 282 58-408 218-514 (519)
66 KOG0277 Peroxisomal targeting 100.0 3.8E-30 8.1E-35 203.7 20.7 274 17-358 12-307 (311)
67 KOG2096 WD40 repeat protein [G 100.0 2.2E-29 4.9E-34 205.9 25.2 294 8-358 81-400 (420)
68 KOG0647 mRNA export protein (c 100.0 6.4E-29 1.4E-33 201.7 26.7 279 5-397 19-312 (347)
69 PTZ00421 coronin; Provisional 100.0 8.8E-29 1.9E-33 231.5 30.2 259 8-362 70-333 (493)
70 KOG1539 WD repeat protein [Gen 100.0 4.9E-29 1.1E-33 228.9 27.0 372 3-408 192-649 (910)
71 KOG0640 mRNA cleavage stimulat 100.0 1.1E-29 2.3E-34 207.0 19.9 287 97-439 106-426 (430)
72 KOG0288 WD40 repeat protein Ti 100.0 2E-30 4.4E-35 219.1 15.8 274 9-357 171-458 (459)
73 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-27 3.3E-32 195.6 31.2 266 63-399 13-296 (311)
74 KOG0305 Anaphase promoting com 100.0 1E-28 2.2E-33 222.1 26.3 242 7-362 211-463 (484)
75 KOG0643 Translation initiation 100.0 1.3E-28 2.9E-33 196.4 23.7 250 98-407 5-261 (327)
76 KOG0276 Vesicle coat complex C 100.0 3.1E-28 6.7E-33 216.6 28.6 167 3-183 87-265 (794)
77 PLN00181 protein SPA1-RELATED; 100.0 8.1E-28 1.7E-32 244.1 34.6 242 12-359 531-792 (793)
78 PTZ00421 coronin; Provisional 100.0 1.8E-27 4E-32 222.7 33.8 261 12-365 19-295 (493)
79 KOG0274 Cdc4 and related F-box 100.0 4.5E-28 9.8E-33 226.8 29.3 276 11-368 206-490 (537)
80 KOG0289 mRNA splicing factor [ 100.0 7.5E-28 1.6E-32 205.0 27.4 283 12-402 218-500 (506)
81 KOG1036 Mitotic spindle checkp 100.0 5E-28 1.1E-32 197.4 25.2 276 1-350 1-294 (323)
82 KOG0316 Conserved WD40 repeat- 100.0 1.9E-28 4.1E-33 191.9 21.6 251 94-410 8-260 (307)
83 KOG0639 Transducin-like enhanc 100.0 1.4E-28 3.1E-33 213.2 21.0 280 9-359 415-703 (705)
84 KOG1407 WD40 repeat protein [F 100.0 2.4E-28 5.1E-33 194.4 20.4 256 97-419 14-272 (313)
85 KOG1063 RNA polymerase II elon 100.0 4.7E-27 1E-31 211.6 30.1 361 5-409 46-650 (764)
86 KOG0310 Conserved WD40 repeat- 100.0 3.1E-28 6.8E-33 210.5 21.7 271 63-405 25-306 (487)
87 KOG0278 Serine/threonine kinas 100.0 1.8E-28 3.9E-33 193.8 17.2 246 2-322 48-302 (334)
88 PTZ00420 coronin; Provisional 100.0 2.6E-26 5.5E-31 215.8 34.4 245 77-391 54-319 (568)
89 KOG0264 Nucleosome remodeling 100.0 1E-27 2.2E-32 205.8 22.2 256 7-361 118-405 (422)
90 KOG0305 Anaphase promoting com 100.0 3.1E-27 6.8E-32 212.5 25.5 237 103-405 217-459 (484)
91 KOG0973 Histone transcription 100.0 3.2E-27 6.9E-32 224.0 26.3 281 63-403 12-350 (942)
92 KOG2106 Uncharacterized conser 100.0 6.1E-26 1.3E-30 197.1 31.7 357 5-404 96-518 (626)
93 KOG0641 WD40 repeat protein [G 100.0 9.5E-26 2.1E-30 175.8 29.6 297 10-360 29-349 (350)
94 PTZ00420 coronin; Provisional 100.0 3.7E-26 8E-31 214.7 31.4 243 5-342 66-318 (568)
95 KOG1332 Vesicle coat complex C 100.0 2.8E-27 6.2E-32 186.4 19.6 259 6-360 4-286 (299)
96 KOG0288 WD40 repeat protein Ti 100.0 5.4E-28 1.2E-32 204.6 15.7 275 58-402 169-455 (459)
97 KOG2055 WD40 repeat protein [G 100.0 2.9E-26 6.2E-31 197.0 25.3 282 13-360 213-512 (514)
98 KOG1539 WD repeat protein [Gen 100.0 7.1E-26 1.5E-30 208.3 29.2 296 4-360 234-648 (910)
99 KOG0313 Microtubule binding pr 100.0 2.6E-26 5.6E-31 192.4 24.0 255 2-317 133-418 (423)
100 KOG0283 WD40 repeat-containing 100.0 9.1E-27 2E-31 215.3 22.8 250 95-409 258-578 (712)
101 KOG2445 Nuclear pore complex c 100.0 1.1E-25 2.4E-30 183.6 26.3 274 7-361 7-319 (361)
102 KOG1274 WD40 repeat protein [G 100.0 8E-26 1.7E-30 210.3 28.8 288 1-357 1-297 (933)
103 KOG0650 WD40 repeat nucleolar 100.0 1.7E-26 3.7E-31 204.7 23.2 281 6-357 393-732 (733)
104 KOG0300 WD40 repeat-containing 100.0 3.3E-26 7.2E-31 187.4 22.2 288 7-362 142-478 (481)
105 KOG0275 Conserved WD40 repeat- 100.0 9.6E-27 2.1E-31 191.1 19.1 276 63-402 212-503 (508)
106 KOG0277 Peroxisomal targeting 100.0 1.8E-26 3.9E-31 183.0 19.6 237 11-316 58-308 (311)
107 KOG0268 Sof1-like rRNA process 100.0 1.3E-27 2.8E-32 198.9 13.5 275 95-405 58-343 (433)
108 KOG4283 Transcription-coupled 100.0 3.5E-25 7.6E-30 179.5 26.7 304 7-359 37-364 (397)
109 KOG0308 Conserved WD40 repeat- 99.9 1E-26 2.2E-31 208.0 18.9 262 12-363 20-288 (735)
110 KOG1408 WD40 repeat protein [F 99.9 1.7E-25 3.6E-30 202.4 26.1 312 16-361 327-714 (1080)
111 KOG0289 mRNA splicing factor [ 99.9 1.3E-25 2.7E-30 191.5 23.8 250 4-359 252-505 (506)
112 KOG0301 Phospholipase A2-activ 99.9 1.9E-25 4.1E-30 201.4 25.4 280 6-407 7-288 (745)
113 KOG0772 Uncharacterized conser 99.9 5.6E-26 1.2E-30 197.9 21.0 292 58-408 161-488 (641)
114 KOG0646 WD40 repeat protein [G 99.9 3.8E-25 8.2E-30 190.5 25.1 275 35-369 18-316 (476)
115 KOG0274 Cdc4 and related F-box 99.9 2.9E-25 6.4E-30 208.0 26.7 246 3-327 238-492 (537)
116 KOG1063 RNA polymerase II elon 99.9 4.6E-25 1E-29 198.9 25.8 366 8-405 262-697 (764)
117 KOG1273 WD40 repeat protein [G 99.9 2.2E-25 4.7E-30 182.4 21.5 286 106-448 26-331 (405)
118 KOG0641 WD40 repeat protein [G 99.9 3.6E-24 7.8E-29 167.1 25.9 243 7-317 83-349 (350)
119 KOG1332 Vesicle coat complex C 99.9 1.6E-25 3.5E-30 176.6 17.5 258 100-405 8-284 (299)
120 KOG2106 Uncharacterized conser 99.9 5.7E-24 1.2E-28 185.0 28.1 313 13-402 200-575 (626)
121 KOG1036 Mitotic spindle checkp 99.9 3.6E-24 7.8E-29 175.0 25.2 260 64-399 13-295 (323)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.2E-23 9.1E-28 187.7 33.8 269 25-370 1-289 (300)
123 KOG0299 U3 snoRNP-associated p 99.9 2.5E-24 5.3E-29 185.2 23.1 240 11-357 200-453 (479)
124 KOG0300 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 177.6 20.3 280 58-405 142-474 (481)
125 KOG0294 WD40 repeat-containing 99.9 7.3E-24 1.6E-28 173.6 23.0 246 94-410 34-284 (362)
126 KOG0646 WD40 repeat protein [G 99.9 2.2E-24 4.7E-29 185.9 19.6 227 12-345 80-334 (476)
127 KOG0264 Nucleosome remodeling 99.9 1.2E-23 2.6E-28 181.0 23.5 255 101-408 122-405 (422)
128 KOG1273 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 171.3 23.1 285 16-408 26-323 (405)
129 KOG2048 WD40 repeat protein [G 99.9 1.4E-22 3E-27 182.8 30.3 288 12-408 24-319 (691)
130 KOG0308 Conserved WD40 repeat- 99.9 2.8E-24 6E-29 192.6 18.5 238 108-407 29-284 (735)
131 KOG1445 Tumor-specific antigen 99.9 1.3E-23 2.9E-28 187.8 22.4 163 5-176 71-249 (1012)
132 KOG4328 WD40 protein [Function 99.9 2.5E-23 5.3E-28 178.9 23.2 289 8-359 181-494 (498)
133 KOG2096 WD40 repeat protein [G 99.9 5.3E-23 1.1E-27 168.8 23.3 280 96-407 79-402 (420)
134 KOG0269 WD40 repeat-containing 99.9 9.4E-24 2E-28 193.0 19.0 290 13-362 39-342 (839)
135 KOG0639 Transducin-like enhanc 99.9 1.6E-23 3.6E-28 182.1 19.0 271 61-400 416-696 (705)
136 KOG0267 Microtubule severing p 99.9 6.5E-25 1.4E-29 198.9 9.7 201 95-402 62-262 (825)
137 KOG0647 mRNA export protein (c 99.9 1.4E-22 3E-27 165.2 21.8 232 9-348 68-311 (347)
138 KOG2055 WD40 repeat protein [G 99.9 7.9E-23 1.7E-27 176.0 21.2 276 63-405 212-510 (514)
139 KOG2048 WD40 repeat protein [G 99.9 1.8E-21 4E-26 175.6 30.4 363 11-416 152-557 (691)
140 KOG0307 Vesicle coat complex C 99.9 2.1E-23 4.6E-28 199.3 19.0 291 17-363 10-330 (1049)
141 KOG1034 Transcriptional repres 99.9 1.9E-22 4.2E-27 166.3 21.9 313 7-360 32-383 (385)
142 KOG0321 WD40 repeat-containing 99.9 1.8E-22 3.8E-27 180.8 23.2 289 18-362 54-393 (720)
143 KOG1274 WD40 repeat protein [G 99.9 3E-21 6.6E-26 180.2 31.5 262 62-398 11-290 (933)
144 KOG0269 WD40 repeat-containing 99.9 1.1E-23 2.5E-28 192.5 14.9 238 18-319 92-342 (839)
145 KOG2919 Guanine nucleotide-bin 99.9 1.6E-21 3.4E-26 160.6 24.4 294 16-402 52-364 (406)
146 KOG4283 Transcription-coupled 99.9 4.6E-22 9.9E-27 161.6 20.4 205 102-364 42-280 (397)
147 KOG0270 WD40 repeat-containing 99.9 2.5E-22 5.3E-27 172.2 19.5 265 16-362 176-451 (463)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.9E-21 2.1E-25 172.1 31.5 275 4-340 22-300 (300)
149 KOG4378 Nuclear protein COP1 [ 99.9 6.4E-22 1.4E-26 172.0 21.8 284 35-390 12-305 (673)
150 KOG2445 Nuclear pore complex c 99.9 5.9E-21 1.3E-25 156.2 25.6 259 100-405 10-316 (361)
151 KOG0302 Ribosome Assembly prot 99.9 1.1E-21 2.3E-26 164.8 20.6 259 10-355 148-434 (440)
152 KOG0650 WD40 repeat nucleolar 99.9 8.6E-22 1.9E-26 175.1 20.2 288 95-402 392-729 (733)
153 KOG0290 Conserved WD40 repeat- 99.9 1.6E-20 3.4E-25 152.5 24.7 282 12-356 43-361 (364)
154 KOG0321 WD40 repeat-containing 99.9 3.2E-21 7E-26 172.8 22.1 314 59-408 56-392 (720)
155 KOG0301 Phospholipase A2-activ 99.9 4E-21 8.6E-26 173.9 21.7 226 9-317 53-288 (745)
156 KOG1007 WD repeat protein TSSC 99.9 1.4E-20 3E-25 152.6 21.1 211 93-360 112-361 (370)
157 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.4E-25 162.7 21.3 252 96-402 179-444 (498)
158 KOG0267 Microtubule severing p 99.9 2.7E-22 5.8E-27 182.2 10.7 196 8-352 65-260 (825)
159 KOG0642 Cell-cycle nuclear pro 99.9 1.9E-21 4.2E-26 171.9 15.7 258 9-363 290-564 (577)
160 KOG1963 WD40 repeat protein [G 99.9 4.5E-19 9.7E-24 165.4 32.0 363 2-408 46-539 (792)
161 KOG1034 Transcriptional repres 99.9 4.3E-20 9.4E-25 152.5 20.6 293 61-402 35-377 (385)
162 KOG1538 Uncharacterized conser 99.9 2.3E-20 5.1E-25 168.3 20.0 275 15-404 14-289 (1081)
163 KOG1188 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 154.3 17.8 278 26-360 41-346 (376)
164 KOG4227 WD40 repeat protein [G 99.9 3.2E-19 7E-24 150.9 22.6 298 9-407 52-387 (609)
165 KOG1538 Uncharacterized conser 99.9 1.2E-18 2.5E-23 157.5 27.2 230 2-295 42-287 (1081)
166 KOG0302 Ribosome Assembly prot 99.9 4E-20 8.6E-25 155.5 16.4 211 4-237 202-427 (440)
167 KOG0644 Uncharacterized conser 99.8 1.4E-20 3E-25 173.8 14.1 280 7-362 184-470 (1113)
168 KOG0649 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 138.2 22.1 288 14-357 11-313 (325)
169 KOG0307 Vesicle coat complex C 99.8 1.8E-20 3.8E-25 179.6 14.3 266 76-402 38-321 (1049)
170 KOG1587 Cytoplasmic dynein int 99.8 2.4E-18 5.2E-23 160.3 27.6 270 78-403 223-511 (555)
171 KOG1963 WD40 repeat protein [G 99.8 3.3E-18 7.2E-23 159.7 27.7 306 7-361 199-539 (792)
172 KOG4497 Uncharacterized conser 99.8 6.5E-18 1.4E-22 139.9 25.9 346 18-404 13-428 (447)
173 KOG0303 Actin-binding protein 99.8 2.9E-19 6.2E-24 151.3 18.4 241 7-341 75-320 (472)
174 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-18 3.2E-23 151.4 23.1 259 15-342 36-305 (673)
175 COG2319 FOG: WD40 repeat [Gene 99.8 7.7E-17 1.7E-21 155.2 37.5 329 8-408 60-401 (466)
176 KOG0771 Prolactin regulatory e 99.8 4.4E-18 9.6E-23 145.8 25.0 200 107-361 148-355 (398)
177 KOG1523 Actin-related protein 99.8 7.9E-18 1.7E-22 138.9 23.2 309 12-359 9-361 (361)
178 KOG0270 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 149.1 19.0 241 106-408 176-450 (463)
179 KOG1007 WD repeat protein TSSC 99.8 1.3E-17 2.8E-22 135.6 22.2 281 76-412 39-365 (370)
180 KOG1524 WD40 repeat-containing 99.8 8.3E-18 1.8E-22 148.2 21.1 267 10-359 11-285 (737)
181 KOG0322 G-protein beta subunit 99.8 2.2E-18 4.7E-23 138.2 15.5 289 5-359 6-322 (323)
182 KOG2919 Guanine nucleotide-bin 99.8 1.5E-17 3.2E-22 137.4 20.8 237 7-290 98-359 (406)
183 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.8E-22 142.0 20.4 289 69-402 28-366 (434)
184 PRK01742 tolB translocation pr 99.8 2.6E-17 5.7E-22 155.1 24.3 236 76-389 183-426 (429)
185 PRK11028 6-phosphogluconolacto 99.8 8.2E-16 1.8E-20 140.8 33.3 271 73-405 8-302 (330)
186 KOG1524 WD40 repeat-containing 99.8 5.8E-18 1.3E-22 149.1 17.5 205 116-402 76-280 (737)
187 KOG2110 Uncharacterized conser 99.8 5.1E-16 1.1E-20 130.9 27.9 281 16-374 49-344 (391)
188 KOG1334 WD40 repeat protein [G 99.8 3.3E-18 7.1E-23 149.0 14.6 296 8-361 137-467 (559)
189 KOG1587 Cytoplasmic dynein int 99.8 1.5E-16 3.2E-21 148.5 26.6 268 35-361 222-517 (555)
190 KOG2139 WD40 repeat protein [G 99.8 1.1E-16 2.5E-21 134.3 22.9 295 14-361 99-432 (445)
191 KOG1188 WD40 repeat protein [G 99.8 1.3E-16 2.8E-21 133.0 21.9 198 116-363 41-245 (376)
192 KOG0644 Uncharacterized conser 99.8 3.5E-18 7.6E-23 158.2 12.8 255 94-402 181-462 (1113)
193 KOG1310 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 145.3 17.9 252 7-371 44-314 (758)
194 PRK11028 6-phosphogluconolacto 99.8 2.7E-15 5.9E-20 137.4 31.9 270 29-361 6-305 (330)
195 COG2319 FOG: WD40 repeat [Gene 99.8 7.1E-15 1.5E-19 141.5 36.1 284 4-361 146-443 (466)
196 KOG1517 Guanine nucleotide bin 99.8 2E-16 4.3E-21 150.6 24.0 289 15-405 1066-1378(1387)
197 KOG0303 Actin-binding protein 99.8 1.6E-16 3.4E-21 134.9 20.7 212 94-363 72-297 (472)
198 KOG1445 Tumor-specific antigen 99.8 9.2E-18 2E-22 150.9 14.0 218 13-321 627-848 (1012)
199 PRK01742 tolB translocation pr 99.8 1.1E-16 2.5E-21 150.8 21.6 225 3-341 193-426 (429)
200 KOG2321 WD40 repeat protein [G 99.8 2.9E-16 6.2E-21 139.8 21.4 298 9-362 47-345 (703)
201 KOG1523 Actin-related protein 99.7 5.1E-16 1.1E-20 128.4 20.1 206 102-363 9-239 (361)
202 KOG0642 Cell-cycle nuclear pro 99.7 2E-16 4.3E-21 140.6 18.2 266 93-410 284-564 (577)
203 KOG0771 Prolactin regulatory e 99.7 7.1E-17 1.5E-21 138.5 14.6 187 17-288 148-341 (398)
204 KOG0649 WD40 repeat protein [G 99.7 1E-15 2.2E-20 121.6 19.4 219 105-374 12-249 (325)
205 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.6E-19 122.8 25.7 244 13-363 5-251 (391)
206 PRK03629 tolB translocation pr 99.7 5.8E-15 1.3E-19 138.8 26.5 240 77-388 179-427 (429)
207 PRK03629 tolB translocation pr 99.7 8.4E-15 1.8E-19 137.7 25.6 229 3-341 188-428 (429)
208 KOG0290 Conserved WD40 repeat- 99.7 4.1E-15 8.9E-20 121.3 19.7 229 10-283 93-347 (364)
209 PRK04922 tolB translocation pr 99.7 2.4E-14 5.2E-19 135.4 27.1 220 77-361 184-412 (433)
210 KOG4497 Uncharacterized conser 99.7 9.6E-15 2.1E-19 121.4 21.0 295 12-355 90-427 (447)
211 PRK05137 tolB translocation pr 99.7 3.3E-14 7.2E-19 134.7 27.4 220 78-362 183-414 (435)
212 PRK02889 tolB translocation pr 99.7 2.9E-14 6.3E-19 134.3 25.9 218 77-359 176-402 (427)
213 KOG2315 Predicted translation 99.7 7.8E-14 1.7E-18 124.4 26.5 311 13-399 34-375 (566)
214 KOG1240 Protein kinase contain 99.7 2.8E-14 6E-19 138.4 25.6 272 1-364 1036-1338(1431)
215 KOG3881 Uncharacterized conser 99.7 8.1E-15 1.8E-19 124.7 19.3 217 101-369 103-329 (412)
216 KOG0322 G-protein beta subunit 99.7 2.4E-15 5.3E-20 121.0 15.2 278 95-405 6-321 (323)
217 KOG2111 Uncharacterized conser 99.7 4.8E-13 1E-17 111.0 26.9 183 125-364 75-260 (346)
218 KOG1272 WD40-repeat-containing 99.7 2E-15 4.2E-20 131.1 13.4 258 16-353 132-402 (545)
219 PRK04922 tolB translocation pr 99.6 3.1E-14 6.8E-19 134.7 22.3 219 3-281 193-432 (433)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 1.1E-14 2.4E-19 128.9 17.3 165 13-228 219-384 (636)
221 KOG4227 WD40 repeat protein [G 99.6 2.8E-14 6.1E-19 121.3 19.0 256 95-407 48-322 (609)
222 KOG1517 Guanine nucleotide bin 99.6 6.4E-14 1.4E-18 133.9 22.8 258 13-363 1109-1384(1387)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 5.9E-14 1.3E-18 124.3 20.1 221 113-366 183-458 (636)
224 PF02239 Cytochrom_D1: Cytochr 99.6 8.6E-13 1.9E-17 120.3 28.5 294 16-369 39-356 (369)
225 PRK02889 tolB translocation pr 99.6 7.2E-14 1.6E-18 131.7 22.0 209 125-400 176-392 (427)
226 KOG2139 WD40 repeat protein [G 99.6 2.9E-13 6.3E-18 114.1 22.8 251 103-402 98-369 (445)
227 KOG1272 WD40-repeat-containing 99.6 2.3E-15 5.1E-20 130.7 10.7 234 103-407 129-362 (545)
228 KOG2314 Translation initiation 99.6 5.2E-13 1.1E-17 118.9 25.2 323 16-399 213-558 (698)
229 PRK05137 tolB translocation pr 99.6 4.5E-13 9.9E-18 127.0 24.8 209 125-398 182-396 (435)
230 PF02239 Cytochrom_D1: Cytochr 99.6 5E-13 1.1E-17 121.7 23.8 313 26-408 6-348 (369)
231 COG5354 Uncharacterized protei 99.6 1.1E-12 2.5E-17 115.7 22.8 310 12-399 31-380 (561)
232 PF08662 eIF2A: Eukaryotic tra 99.6 3.4E-13 7.4E-18 111.4 18.2 113 219-362 60-181 (194)
233 KOG2111 Uncharacterized conser 99.6 1.1E-12 2.5E-17 108.8 20.6 236 105-407 7-256 (346)
234 KOG3881 Uncharacterized conser 99.6 1.1E-12 2.3E-17 112.0 20.7 266 12-341 54-342 (412)
235 PF08662 eIF2A: Eukaryotic tra 99.6 1.6E-13 3.4E-18 113.4 14.7 151 223-399 10-164 (194)
236 TIGR02800 propeller_TolB tol-p 99.5 3.7E-12 8.1E-17 121.2 25.9 208 77-352 170-386 (417)
237 KOG2041 WD40 repeat protein [G 99.5 2.8E-12 6.2E-17 117.9 23.4 301 11-360 12-337 (1189)
238 PRK01029 tolB translocation pr 99.5 5.3E-12 1.2E-16 118.3 26.2 230 77-364 165-407 (428)
239 PF10282 Lactonase: Lactonase, 99.5 1.6E-10 3.4E-15 105.9 35.1 232 76-360 61-322 (345)
240 PRK00178 tolB translocation pr 99.5 2.4E-12 5.2E-17 122.5 23.9 219 3-281 188-427 (430)
241 COG2706 3-carboxymuconate cycl 99.5 1.2E-10 2.5E-15 99.3 30.5 260 10-362 36-323 (346)
242 KOG1240 Protein kinase contain 99.5 5.3E-12 1.1E-16 123.0 25.2 227 94-368 1039-1281(1431)
243 PRK00178 tolB translocation pr 99.5 8.4E-12 1.8E-16 118.7 26.8 219 78-361 180-407 (430)
244 PRK04792 tolB translocation pr 99.5 7E-12 1.5E-16 118.6 25.6 216 78-360 199-425 (448)
245 KOG1354 Serine/threonine prote 99.5 8.9E-13 1.9E-17 110.5 17.1 264 12-319 24-361 (433)
246 TIGR02800 propeller_TolB tol-p 99.5 2.2E-12 4.8E-17 122.7 22.3 157 3-177 179-356 (417)
247 KOG1334 WD40 repeat protein [G 99.5 5.5E-13 1.2E-17 116.9 16.0 295 94-442 133-469 (559)
248 PRK04792 tolB translocation pr 99.5 4.1E-12 9E-17 120.1 22.6 216 6-281 210-446 (448)
249 KOG2315 Predicted translation 99.5 2.2E-11 4.9E-16 109.0 25.5 269 15-362 75-392 (566)
250 KOG2314 Translation initiation 99.5 1.5E-11 3.4E-16 109.8 24.2 289 11-364 248-577 (698)
251 COG5354 Uncharacterized protei 99.5 4.6E-11 1E-15 105.8 26.9 297 14-399 72-420 (561)
252 KOG1310 WD40 repeat protein [G 99.5 4.9E-13 1.1E-17 118.9 13.6 178 94-317 41-231 (758)
253 COG2706 3-carboxymuconate cycl 99.5 6.2E-10 1.4E-14 95.0 31.3 286 76-410 15-324 (346)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.8E-10 4E-15 102.4 29.3 264 77-368 27-338 (352)
255 PRK01029 tolB translocation pr 99.5 2.2E-11 4.8E-16 114.2 24.4 186 105-342 232-426 (428)
256 PF10282 Lactonase: Lactonase, 99.5 4.6E-10 9.9E-15 102.9 32.2 250 103-397 36-310 (345)
257 KOG1354 Serine/threonine prote 99.5 1E-11 2.2E-16 104.3 19.1 274 102-402 24-353 (433)
258 KOG2321 WD40 repeat protein [G 99.5 3.5E-11 7.5E-16 108.0 23.5 267 102-402 50-337 (703)
259 COG4946 Uncharacterized protei 99.4 9E-11 1.9E-15 103.1 23.4 96 76-178 381-480 (668)
260 KOG0974 WD-repeat protein WDR6 99.4 4.6E-11 9.9E-16 114.8 19.9 259 74-402 23-282 (967)
261 KOG1409 Uncharacterized conser 99.4 4.3E-11 9.3E-16 100.7 17.3 238 7-317 18-270 (404)
262 KOG0974 WD-repeat protein WDR6 99.4 6.9E-11 1.5E-15 113.6 20.9 280 12-364 6-292 (967)
263 KOG4547 WD40 repeat-containing 99.4 2.6E-10 5.7E-15 103.1 21.7 179 22-239 2-210 (541)
264 KOG0280 Uncharacterized conser 99.3 1.3E-09 2.9E-14 89.9 23.3 198 105-361 123-334 (339)
265 KOG1912 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 106.1 21.2 147 15-178 17-189 (1062)
266 KOG1409 Uncharacterized conser 99.3 4.5E-11 9.8E-16 100.5 13.5 169 6-182 107-277 (404)
267 COG4946 Uncharacterized protei 99.3 3.7E-08 8E-13 87.1 31.5 147 217-398 358-508 (668)
268 KOG4547 WD40 repeat-containing 99.3 1E-09 2.2E-14 99.3 22.3 190 66-361 4-221 (541)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.4E-08 3.1E-13 90.5 27.4 260 21-326 53-339 (352)
270 PF15492 Nbas_N: Neuroblastoma 99.3 3.6E-08 7.8E-13 81.9 27.0 214 104-373 44-272 (282)
271 PRK04043 tolB translocation pr 99.3 1.6E-08 3.4E-13 94.4 28.4 203 105-361 189-401 (419)
272 PRK04043 tolB translocation pr 99.2 3.8E-09 8.3E-14 98.5 23.6 186 14-259 188-401 (419)
273 PF04762 IKI3: IKI3 family; I 99.2 2.3E-08 5.1E-13 101.7 30.1 333 13-399 75-507 (928)
274 KOG0309 Conserved WD40 repeat- 99.2 2.2E-10 4.8E-15 106.1 12.6 299 12-362 23-341 (1081)
275 PLN02919 haloacid dehalogenase 99.2 7.4E-08 1.6E-12 100.2 32.0 218 104-364 624-892 (1057)
276 KOG1064 RAVE (regulator of V-A 99.2 2.4E-10 5.2E-15 115.9 12.8 199 102-368 2207-2406(2439)
277 KOG2041 WD40 repeat protein [G 99.1 7E-09 1.5E-13 96.1 19.2 238 102-403 13-283 (1189)
278 PF08450 SGL: SMP-30/Gluconola 99.1 4E-07 8.6E-12 79.6 29.7 182 106-349 42-244 (246)
279 TIGR03300 assembly_YfgL outer 99.1 2.2E-07 4.7E-12 87.1 29.5 278 24-370 64-348 (377)
280 KOG1064 RAVE (regulator of V-A 99.1 9.6E-10 2.1E-14 111.7 13.1 205 8-329 2203-2410(2439)
281 KOG4532 WD40-like repeat conta 99.1 5.8E-08 1.3E-12 79.4 20.6 237 115-408 84-332 (344)
282 PF07433 DUF1513: Protein of u 99.1 4E-07 8.7E-12 78.3 25.6 253 59-353 9-278 (305)
283 TIGR03300 assembly_YfgL outer 99.1 1.8E-07 4E-12 87.6 25.7 254 24-357 104-376 (377)
284 PF04762 IKI3: IKI3 family; I 99.0 6.7E-07 1.4E-11 91.4 30.7 270 102-398 74-369 (928)
285 KOG4190 Uncharacterized conser 99.0 1.6E-09 3.5E-14 97.3 10.5 297 5-402 727-1030(1034)
286 KOG3914 WD repeat protein WDR4 99.0 5E-09 1.1E-13 90.5 13.1 153 15-181 64-229 (390)
287 KOG4532 WD40-like repeat conta 99.0 1.3E-07 2.8E-12 77.4 20.3 193 117-362 130-333 (344)
288 COG5170 CDC55 Serine/threonine 99.0 8.1E-09 1.8E-13 86.1 13.5 269 102-400 25-359 (460)
289 KOG0280 Uncharacterized conser 99.0 2.4E-08 5.1E-13 82.7 15.9 84 94-177 156-243 (339)
290 KOG3914 WD repeat protein WDR4 99.0 1.3E-08 2.7E-13 88.1 13.4 169 148-370 65-233 (390)
291 PF07433 DUF1513: Protein of u 99.0 1.3E-06 2.8E-11 75.3 25.0 254 105-402 6-280 (305)
292 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.3E-14 96.1 8.7 211 95-363 727-951 (1034)
293 KOG4714 Nucleoporin [Nuclear s 99.0 2.8E-08 6.1E-13 80.8 13.7 165 5-176 81-255 (319)
294 COG5170 CDC55 Serine/threonine 99.0 3.9E-08 8.5E-13 82.1 14.8 266 12-361 25-368 (460)
295 PLN02919 haloacid dehalogenase 98.9 1.3E-06 2.8E-11 91.1 28.9 260 107-408 571-889 (1057)
296 PF00400 WD40: WD domain, G-be 98.9 3.2E-09 6.9E-14 62.2 5.9 39 3-41 1-39 (39)
297 KOG1832 HIV-1 Vpr-binding prot 98.9 1.6E-09 3.6E-14 102.6 7.0 263 7-349 1095-1378(1516)
298 KOG0309 Conserved WD40 repeat- 98.9 4.7E-09 1E-13 97.6 9.5 179 103-317 158-339 (1081)
299 KOG1912 WD40 repeat protein [G 98.9 2.4E-07 5.3E-12 87.1 18.9 231 67-361 18-305 (1062)
300 KOG1832 HIV-1 Vpr-binding prot 98.9 8.8E-09 1.9E-13 97.9 9.2 212 94-347 1092-1318(1516)
301 PF08450 SGL: SMP-30/Gluconola 98.8 4.3E-06 9.4E-11 73.1 24.4 229 108-394 4-241 (246)
302 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.5E-13 59.8 5.5 38 320-358 2-39 (39)
303 PF15492 Nbas_N: Neuroblastoma 98.8 9.1E-07 2E-11 73.8 18.0 163 16-182 46-266 (282)
304 KOG4714 Nucleoporin [Nuclear s 98.8 1.9E-07 4.2E-12 76.1 12.1 97 250-362 159-256 (319)
305 KOG1275 PAB-dependent poly(A) 98.7 4.9E-07 1.1E-11 86.7 16.2 151 103-315 177-340 (1118)
306 PF08596 Lgl_C: Lethal giant l 98.7 1.4E-05 3E-10 73.6 24.7 298 15-402 3-330 (395)
307 KOG0882 Cyclophilin-related pe 98.7 7.4E-07 1.6E-11 78.5 14.9 253 9-364 5-309 (558)
308 KOG1920 IkappaB kinase complex 98.7 1E-05 2.2E-10 80.6 24.0 239 103-364 68-326 (1265)
309 PRK11138 outer membrane biogen 98.7 2.2E-05 4.7E-10 74.0 25.8 258 25-359 120-393 (394)
310 KOG3617 WD40 and TPR repeat-co 98.7 1.6E-06 3.4E-11 82.7 17.5 286 106-402 62-379 (1416)
311 KOG3621 WD40 repeat-containing 98.7 2.9E-05 6.3E-10 73.0 25.3 134 12-154 32-179 (726)
312 KOG2114 Vacuolar assembly/sort 98.7 5.4E-06 1.2E-10 79.4 20.6 182 97-333 58-259 (933)
313 KOG0882 Cyclophilin-related pe 98.7 2.3E-07 4.9E-12 81.7 10.7 208 102-366 8-237 (558)
314 PRK02888 nitrous-oxide reducta 98.7 8.4E-06 1.8E-10 77.2 21.5 185 111-361 200-405 (635)
315 KOG1645 RING-finger-containing 98.7 1.3E-05 2.8E-10 70.0 20.8 84 95-179 185-270 (463)
316 KOG2114 Vacuolar assembly/sort 98.6 1.3E-05 2.8E-10 76.9 22.4 206 110-362 30-245 (933)
317 PF00930 DPPIV_N: Dipeptidyl p 98.6 8E-06 1.7E-10 75.3 20.9 280 77-397 23-346 (353)
318 PRK11138 outer membrane biogen 98.6 0.0001 2.2E-09 69.4 28.2 278 25-370 69-363 (394)
319 KOG2695 WD40 repeat protein [G 98.6 2E-07 4.3E-12 79.2 8.0 152 20-185 218-386 (425)
320 PF06433 Me-amine-dh_H: Methyl 98.6 1.3E-05 2.9E-10 70.0 18.4 277 35-369 17-329 (342)
321 PF13360 PQQ_2: PQQ-like domai 98.5 4.3E-05 9.3E-10 66.6 20.8 220 76-364 2-234 (238)
322 PF11768 DUF3312: Protein of u 98.5 0.00014 3E-09 67.4 24.0 78 269-365 257-334 (545)
323 KOG2066 Vacuolar assembly/sort 98.5 4.3E-06 9.3E-11 79.4 14.2 185 103-361 39-234 (846)
324 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.0003 6.5E-09 65.0 25.3 278 13-349 42-346 (353)
325 PF14583 Pectate_lyase22: Olig 98.4 0.00027 5.9E-09 63.3 23.3 256 109-398 86-370 (386)
326 COG0823 TolB Periplasmic compo 98.4 2.3E-05 4.9E-10 73.0 16.6 196 97-351 186-390 (425)
327 PF06433 Me-amine-dh_H: Methyl 98.3 0.00013 2.9E-09 64.0 19.4 268 18-327 40-330 (342)
328 COG0823 TolB Periplasmic compo 98.3 3.8E-05 8.1E-10 71.6 16.9 210 125-400 173-391 (425)
329 KOG2695 WD40 repeat protein [G 98.3 2.1E-06 4.6E-11 73.1 7.3 165 109-327 217-386 (425)
330 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0014 2.9E-08 61.6 26.7 50 126-177 62-111 (410)
331 KOG1920 IkappaB kinase complex 98.3 0.00049 1.1E-08 69.2 24.2 119 149-319 199-324 (1265)
332 KOG2066 Vacuolar assembly/sort 98.3 9.3E-05 2E-09 70.8 18.3 147 13-180 39-192 (846)
333 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0015 3.3E-08 54.1 24.8 140 26-174 24-164 (354)
334 COG3490 Uncharacterized protei 98.2 0.0023 4.9E-08 54.0 22.8 120 45-172 58-186 (366)
335 cd00216 PQQ_DH Dehydrogenases 98.2 0.0029 6.2E-08 61.3 27.6 113 25-143 61-193 (488)
336 PF11768 DUF3312: Protein of u 98.2 0.0004 8.6E-09 64.6 19.9 115 104-261 206-332 (545)
337 KOG1008 Uncharacterized conser 98.2 1.4E-06 2.9E-11 80.5 3.7 161 99-317 98-275 (783)
338 KOG1275 PAB-dependent poly(A) 98.1 0.0002 4.3E-09 69.6 16.1 191 114-358 146-340 (1118)
339 PRK02888 nitrous-oxide reducta 98.0 0.002 4.4E-08 61.6 21.2 191 21-259 200-405 (635)
340 PF13360 PQQ_2: PQQ-like domai 98.0 0.0034 7.4E-08 54.6 21.8 150 22-178 33-194 (238)
341 PF02897 Peptidase_S9_N: Proly 98.0 0.0064 1.4E-07 57.9 25.2 201 106-360 126-357 (414)
342 PF08553 VID27: VID27 cytoplas 98.0 0.00038 8.2E-09 69.0 16.5 145 26-175 494-647 (794)
343 PF06977 SdiA-regulated: SdiA- 97.9 0.011 2.3E-07 50.8 22.4 213 97-357 15-247 (248)
344 PF04053 Coatomer_WDAD: Coatom 97.9 0.0011 2.4E-08 62.2 17.1 134 14-176 33-174 (443)
345 PF04053 Coatomer_WDAD: Coatom 97.9 0.0066 1.4E-07 57.1 21.7 218 102-363 31-265 (443)
346 PRK13616 lipoprotein LpqB; Pro 97.8 0.0071 1.5E-07 59.3 22.4 170 221-417 399-577 (591)
347 smart00320 WD40 WD40 repeats. 97.8 6E-05 1.3E-09 43.5 5.1 38 4-41 3-40 (40)
348 cd00216 PQQ_DH Dehydrogenases 97.8 0.041 8.9E-07 53.4 26.8 154 26-179 111-323 (488)
349 KOG1645 RING-finger-containing 97.8 0.00045 9.7E-09 60.7 11.8 114 127-281 175-291 (463)
350 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.017 3.7E-07 48.2 27.5 65 114-178 62-126 (354)
351 COG3490 Uncharacterized protei 97.7 0.014 2.9E-07 49.5 18.9 225 105-370 69-320 (366)
352 PF06977 SdiA-regulated: SdiA- 97.7 0.027 5.7E-07 48.4 22.6 118 11-176 19-148 (248)
353 PF07995 GSDH: Glucose / Sorbo 97.6 0.028 6.1E-07 51.3 21.8 56 300-355 272-330 (331)
354 smart00320 WD40 WD40 repeats. 97.6 0.00021 4.5E-09 41.0 5.5 39 135-173 2-40 (40)
355 KOG3621 WD40 repeat-containing 97.6 0.00017 3.7E-09 68.1 7.0 109 300-408 46-154 (726)
356 PF03178 CPSF_A: CPSF A subuni 97.6 0.015 3.2E-07 53.2 19.6 181 125-361 2-203 (321)
357 PRK13616 lipoprotein LpqB; Pro 97.6 0.021 4.5E-07 56.1 21.3 59 104-165 350-416 (591)
358 PF08596 Lgl_C: Lethal giant l 97.6 0.01 2.2E-07 55.0 18.2 170 8-179 81-294 (395)
359 KOG3617 WD40 and TPR repeat-co 97.6 0.00031 6.6E-09 67.8 8.3 114 223-362 20-133 (1416)
360 KOG4640 Anaphase-promoting com 97.5 0.00057 1.2E-08 63.8 9.6 93 14-155 21-115 (665)
361 PF02897 Peptidase_S9_N: Proly 97.5 0.086 1.9E-06 50.3 26.0 151 15-178 125-312 (414)
362 PF00780 CNH: CNH domain; Int 97.5 0.057 1.2E-06 48.1 25.2 201 106-372 38-267 (275)
363 KOG1008 Uncharacterized conser 97.5 4.7E-05 1E-09 70.8 2.3 204 103-361 56-276 (783)
364 KOG2395 Protein involved in va 97.5 0.006 1.3E-07 56.1 15.2 139 25-176 345-501 (644)
365 KOG2444 WD40 repeat protein [G 97.5 0.0003 6.4E-09 57.2 6.0 61 300-361 115-178 (238)
366 COG3391 Uncharacterized conser 97.5 0.095 2.1E-06 49.0 27.1 184 105-341 117-309 (381)
367 KOG4640 Anaphase-promoting com 97.4 0.00071 1.5E-08 63.2 8.8 76 103-179 20-96 (665)
368 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.022 4.7E-07 41.2 14.1 66 106-175 2-71 (111)
369 PF08553 VID27: VID27 cytoplas 97.4 0.0089 1.9E-07 59.7 16.3 58 301-360 590-647 (794)
370 PF15390 DUF4613: Domain of un 97.4 0.0056 1.2E-07 57.3 13.6 158 60-258 15-186 (671)
371 COG3386 Gluconolactonase [Carb 97.3 0.1 2.3E-06 46.6 21.2 215 109-371 30-253 (307)
372 KOG2079 Vacuolar assembly/sort 97.3 0.0068 1.5E-07 60.7 14.0 100 70-176 102-204 (1206)
373 COG3386 Gluconolactonase [Carb 97.3 0.12 2.7E-06 46.1 22.3 105 221-349 165-274 (307)
374 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.039 8.4E-07 39.9 14.9 100 16-170 2-109 (111)
375 PF14583 Pectate_lyase22: Olig 97.3 0.053 1.1E-06 49.1 18.0 242 108-400 40-304 (386)
376 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0014 3.1E-08 39.2 5.5 34 12-46 10-43 (47)
377 PF04841 Vps16_N: Vps16, N-ter 97.2 0.2 4.4E-06 47.2 28.6 58 271-344 216-273 (410)
378 COG3391 Uncharacterized conser 97.2 0.21 4.5E-06 46.8 28.7 204 105-366 75-289 (381)
379 PF05096 Glu_cyclase_2: Glutam 97.1 0.085 1.8E-06 45.2 17.2 196 16-239 47-251 (264)
380 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.31 6.6E-06 47.7 30.4 62 308-371 440-501 (527)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.23 5E-06 46.2 24.1 41 113-154 77-117 (415)
382 PF03178 CPSF_A: CPSF A subuni 97.0 0.23 4.9E-06 45.4 20.3 156 11-176 21-203 (321)
383 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0033 7.1E-08 37.6 5.4 34 103-137 11-44 (47)
384 PF10168 Nup88: Nuclear pore c 97.0 0.5 1.1E-05 47.8 24.0 76 102-177 83-181 (717)
385 PF05694 SBP56: 56kDa selenium 97.0 0.29 6.4E-06 45.0 24.4 109 75-185 96-240 (461)
386 PRK10115 protease 2; Provision 97.0 0.54 1.2E-05 47.8 28.1 69 107-175 175-255 (686)
387 PF10647 Gmad1: Lipoprotein Lp 96.9 0.12 2.5E-06 45.2 16.8 149 147-353 25-188 (253)
388 KOG2395 Protein involved in va 96.9 0.037 8E-07 51.2 13.7 59 300-360 442-500 (644)
389 COG3204 Uncharacterized protei 96.9 0.24 5.3E-06 42.6 19.0 120 99-239 81-201 (316)
390 PF14870 PSII_BNR: Photosynthe 96.8 0.33 7.1E-06 43.2 18.4 82 89-173 132-213 (302)
391 PF10647 Gmad1: Lipoprotein Lp 96.7 0.15 3.4E-06 44.4 15.9 153 220-401 25-188 (253)
392 COG3204 Uncharacterized protei 96.7 0.36 7.7E-06 41.7 18.8 119 11-176 83-211 (316)
393 PF12234 Rav1p_C: RAVE protein 96.7 0.14 3.1E-06 50.0 16.7 133 94-257 20-155 (631)
394 PF05694 SBP56: 56kDa selenium 96.5 0.2 4.4E-06 46.0 15.5 141 106-265 183-349 (461)
395 PHA02713 hypothetical protein; 96.5 0.3 6.5E-06 48.3 18.2 52 310-364 481-537 (557)
396 KOG2079 Vacuolar assembly/sort 96.5 0.018 3.8E-07 57.9 9.5 102 229-359 98-202 (1206)
397 KOG2280 Vacuolar assembly/sort 96.5 0.71 1.5E-05 45.3 19.4 53 124-178 63-115 (829)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.4 1.1 2.4E-05 43.9 29.2 155 25-180 120-338 (527)
399 TIGR03118 PEPCTERM_chp_1 conse 96.3 0.65 1.4E-05 40.5 23.3 245 104-388 23-307 (336)
400 KOG4659 Uncharacterized conser 96.3 0.52 1.1E-05 49.1 18.1 69 275-348 596-679 (1899)
401 KOG3630 Nuclear pore complex, 96.2 0.32 6.9E-06 49.9 16.3 150 7-163 94-261 (1405)
402 KOG2444 WD40 repeat protein [G 96.2 0.024 5.2E-07 46.5 7.3 143 28-177 33-179 (238)
403 PF10168 Nup88: Nuclear pore c 96.1 0.5 1.1E-05 47.7 17.6 24 216-239 82-105 (717)
404 KOG1897 Damage-specific DNA bi 96.1 1.9 4.2E-05 43.8 28.3 101 300-402 500-607 (1096)
405 KOG1897 Damage-specific DNA bi 96.1 2 4.4E-05 43.7 32.2 380 10-403 484-938 (1096)
406 KOG4441 Proteins containing BT 96.1 1.4 3E-05 43.7 20.0 96 78-181 302-410 (571)
407 KOG1916 Nuclear protein, conta 95.9 0.041 8.9E-07 54.4 8.5 114 60-174 128-264 (1283)
408 TIGR03606 non_repeat_PQQ dehyd 95.9 1.7 3.7E-05 41.2 28.6 38 9-46 25-62 (454)
409 PF10313 DUF2415: Uncharacteri 95.8 0.035 7.7E-07 32.1 4.8 31 14-44 1-34 (43)
410 KOG3630 Nuclear pore complex, 95.8 0.14 3E-06 52.3 11.8 115 62-177 109-230 (1405)
411 PF14727 PHTB1_N: PTHB1 N-term 95.7 1.9 4.1E-05 40.4 27.5 145 25-176 37-205 (418)
412 PF00780 CNH: CNH domain; Int 95.6 1.6 3.5E-05 38.8 23.4 63 113-179 5-68 (275)
413 PRK10115 protease 2; Provision 95.5 3.3 7.2E-05 42.3 24.8 72 104-177 127-209 (686)
414 KOG4441 Proteins containing BT 95.3 2.1 4.5E-05 42.5 18.1 65 114-180 284-362 (571)
415 KOG4499 Ca2+-binding protein R 95.3 0.55 1.2E-05 39.0 11.6 46 109-154 217-262 (310)
416 PF15390 DUF4613: Domain of un 95.3 0.76 1.7E-05 43.8 13.9 160 102-316 18-185 (671)
417 PHA02713 hypothetical protein; 95.0 2.9 6.2E-05 41.6 18.3 83 309-400 432-523 (557)
418 PHA03098 kelch-like protein; P 95.0 1.4 3E-05 43.7 16.3 63 114-178 294-369 (534)
419 PF12234 Rav1p_C: RAVE protein 94.8 1.1 2.4E-05 44.1 14.2 112 231-359 32-155 (631)
420 PF14870 PSII_BNR: Photosynthe 94.7 3 6.5E-05 37.3 32.3 281 8-357 11-301 (302)
421 KOG3616 Selective LIM binding 94.6 2.3 5E-05 41.9 15.5 77 329-415 336-412 (1636)
422 PF10313 DUF2415: Uncharacteri 94.6 0.18 3.8E-06 29.3 5.1 31 104-134 1-34 (43)
423 TIGR03074 PQQ_membr_DH membran 94.5 6.7 0.00015 40.4 21.5 65 115-179 194-282 (764)
424 COG5276 Uncharacterized conser 94.4 3 6.6E-05 36.2 26.5 147 15-178 88-244 (370)
425 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 0.8 1.7E-05 42.7 11.6 81 98-178 302-401 (415)
426 PRK13684 Ycf48-like protein; P 94.0 4.8 0.0001 36.9 18.5 66 103-171 172-239 (334)
427 COG4590 ABC-type uncharacteriz 93.8 1.5 3.3E-05 40.3 11.9 172 4-179 211-390 (733)
428 COG4590 ABC-type uncharacteriz 93.7 0.31 6.8E-06 44.5 7.5 174 139-363 214-389 (733)
429 PF07995 GSDH: Glucose / Sorbo 93.7 5.6 0.00012 36.5 24.9 50 105-156 3-59 (331)
430 KOG2280 Vacuolar assembly/sort 93.5 9 0.00019 38.1 19.5 83 77-170 64-150 (829)
431 TIGR02604 Piru_Ver_Nterm putat 93.4 5.3 0.00012 37.3 15.7 155 219-399 14-204 (367)
432 PF05096 Glu_cyclase_2: Glutam 93.4 4.8 0.0001 34.8 20.0 183 105-349 46-249 (264)
433 PF14761 HPS3_N: Hermansky-Pud 93.1 4.4 9.5E-05 33.7 16.3 56 116-172 29-92 (215)
434 TIGR02604 Piru_Ver_Nterm putat 93.0 7.9 0.00017 36.2 25.7 57 105-164 73-142 (367)
435 KOG2377 Uncharacterized conser 93.0 4.9 0.00011 37.3 13.7 140 107-286 26-168 (657)
436 KOG2377 Uncharacterized conser 93.0 1.4 3.1E-05 40.6 10.3 121 10-176 63-186 (657)
437 COG5167 VID27 Protein involved 92.9 2.2 4.8E-05 40.0 11.6 63 114-177 572-634 (776)
438 PF07569 Hira: TUP1-like enhan 92.8 1 2.2E-05 38.2 9.0 66 111-177 18-97 (219)
439 PF14727 PHTB1_N: PTHB1 N-term 92.6 6.8 0.00015 36.9 14.8 59 300-360 146-204 (418)
440 COG3292 Predicted periplasmic 92.5 10 0.00022 36.5 15.4 103 302-408 389-492 (671)
441 PF07569 Hira: TUP1-like enhan 92.2 1.7 3.7E-05 36.9 9.6 84 21-139 18-101 (219)
442 PF03022 MRJP: Major royal jel 92.2 8.3 0.00018 34.5 18.8 155 15-176 2-216 (287)
443 PHA02790 Kelch-like protein; P 92.1 11 0.00024 36.7 16.3 62 114-177 271-341 (480)
444 COG5167 VID27 Protein involved 92.0 6.3 0.00014 37.2 13.4 59 300-360 574-632 (776)
445 PF07676 PD40: WD40-like Beta 92.0 0.87 1.9E-05 25.9 5.5 32 9-40 4-38 (39)
446 PF09453 HIRA_B: HIRA B motif; 91.6 0.046 9.9E-07 26.8 -0.2 13 505-517 7-19 (24)
447 PF12657 TFIIIC_delta: Transcr 91.5 2.4 5.2E-05 34.5 9.5 31 104-134 86-122 (173)
448 PHA03098 kelch-like protein; P 90.9 18 0.0004 35.9 18.5 64 114-179 389-468 (534)
449 TIGR02276 beta_rpt_yvtn 40-res 90.7 1.7 3.7E-05 25.1 6.0 40 113-153 1-41 (42)
450 KOG1916 Nuclear protein, conta 90.5 0.25 5.4E-06 49.2 3.3 149 124-316 110-264 (1283)
451 PF13449 Phytase-like: Esteras 90.5 14 0.0003 33.9 15.5 121 102-239 18-167 (326)
452 PF08728 CRT10: CRT10; InterP 90.4 9.8 0.00021 38.3 13.9 171 115-316 49-245 (717)
453 KOG2247 WD40 repeat-containing 89.9 0.078 1.7E-06 48.8 -0.5 146 148-354 37-182 (615)
454 COG5290 IkappaB kinase complex 89.8 24 0.00052 35.6 20.6 116 14-132 17-141 (1243)
455 PF12657 TFIIIC_delta: Transcr 89.8 3.4 7.3E-05 33.6 9.0 31 331-361 86-122 (173)
456 PF08728 CRT10: CRT10; InterP 89.6 25 0.00055 35.5 16.6 73 272-360 164-246 (717)
457 KOG1900 Nuclear pore complex, 89.4 8.7 0.00019 40.9 13.1 37 329-365 241-277 (1311)
458 KOG2247 WD40 repeat-containing 89.1 0.11 2.3E-06 47.9 -0.2 144 16-167 37-180 (615)
459 KOG4460 Nuclear pore complex, 88.7 23 0.0005 33.9 18.0 31 332-362 167-200 (741)
460 PF07676 PD40: WD40-like Beta 88.4 2 4.4E-05 24.3 5.0 29 102-130 7-38 (39)
461 PF14761 HPS3_N: Hermansky-Pud 88.1 11 0.00024 31.4 10.6 42 250-292 38-80 (215)
462 COG5276 Uncharacterized conser 88.0 18 0.00038 31.8 24.9 197 103-362 86-287 (370)
463 PF07250 Glyoxal_oxid_N: Glyox 87.9 16 0.00034 31.6 11.9 50 127-176 48-100 (243)
464 PHA02790 Kelch-like protein; P 87.7 29 0.00063 33.9 17.2 92 77-179 331-427 (480)
465 TIGR03074 PQQ_membr_DH membran 87.5 39 0.00084 35.1 22.4 27 300-326 460-486 (764)
466 PF03022 MRJP: Major royal jel 87.3 21 0.00046 31.9 19.2 67 77-143 34-106 (287)
467 KOG0918 Selenium-binding prote 87.1 24 0.00053 32.4 13.9 157 76-238 228-408 (476)
468 PF12341 DUF3639: Protein of u 87.1 1.7 3.7E-05 22.3 3.4 26 14-41 2-27 (27)
469 PRK13684 Ycf48-like protein; P 86.8 25 0.00055 32.3 30.8 271 10-358 42-329 (334)
470 KOG1900 Nuclear pore complex, 86.3 53 0.0011 35.5 17.2 76 102-178 177-275 (1311)
471 KOG4460 Nuclear pore complex, 86.1 33 0.00071 32.9 14.0 74 104-177 104-200 (741)
472 COG3823 Glutamine cyclotransfe 85.4 20 0.00043 29.7 12.5 103 24-137 55-162 (262)
473 KOG1983 Tomosyn and related SN 84.0 67 0.0014 34.7 18.0 31 104-134 36-66 (993)
474 TIGR03118 PEPCTERM_chp_1 conse 83.5 32 0.00069 30.6 22.2 81 250-340 222-307 (336)
475 KOG4499 Ca2+-binding protein R 83.2 27 0.00059 29.6 18.6 40 300-340 224-263 (310)
476 PF13449 Phytase-like: Esteras 83.1 38 0.00081 31.1 19.1 198 146-361 20-250 (326)
477 COG5290 IkappaB kinase complex 83.0 30 0.00065 35.0 12.3 140 223-390 206-348 (1243)
478 PF11715 Nup160: Nucleoporin N 82.6 12 0.00025 37.4 10.2 67 113-179 156-252 (547)
479 KOG3616 Selective LIM binding 82.5 44 0.00095 33.6 13.2 34 146-179 15-48 (1636)
480 PF07250 Glyoxal_oxid_N: Glyox 82.4 24 0.00051 30.5 10.4 89 310-399 47-138 (243)
481 TIGR03606 non_repeat_PQQ dehyd 82.4 48 0.001 31.8 14.3 112 272-399 30-166 (454)
482 COG4257 Vgb Streptogramin lyas 82.4 33 0.00071 29.9 21.6 212 104-374 62-275 (353)
483 PF05935 Arylsulfotrans: Aryls 81.2 57 0.0012 31.9 22.0 158 123-327 126-311 (477)
484 smart00564 PQQ beta-propeller 81.1 5 0.00011 21.5 4.1 25 116-140 7-31 (33)
485 PF08801 Nucleoporin_N: Nup133 81.0 53 0.0012 31.5 13.9 31 146-176 190-220 (422)
486 PF10433 MMS1_N: Mono-function 79.7 66 0.0014 31.7 22.3 254 69-388 224-503 (504)
487 PF12768 Rax2: Cortical protei 79.6 33 0.00072 30.4 10.7 90 77-173 16-121 (281)
488 PF03088 Str_synth: Strictosid 79.3 19 0.00041 25.3 7.7 43 121-164 33-75 (89)
489 TIGR02276 beta_rpt_yvtn 40-res 79.2 9.6 0.00021 21.8 5.3 26 302-327 7-32 (42)
490 COG3823 Glutamine cyclotransfe 78.5 38 0.00081 28.2 15.3 65 114-178 55-122 (262)
491 PF03088 Str_synth: Strictosid 78.0 10 0.00022 26.6 5.7 41 307-349 35-75 (89)
492 KOG1520 Predicted alkaloid syn 77.9 58 0.0013 30.0 12.8 129 219-363 115-252 (376)
493 PF10214 Rrn6: RNA polymerase 77.7 97 0.0021 32.5 26.3 154 102-283 78-258 (765)
494 PF12768 Rax2: Cortical protei 77.3 53 0.0011 29.2 12.6 54 125-178 16-75 (281)
495 PF02333 Phytase: Phytase; In 77.2 63 0.0014 30.1 21.3 150 23-177 66-239 (381)
496 KOG1898 Splicing factor 3b, su 75.0 1.2E+02 0.0026 32.2 27.1 95 248-361 910-1005(1205)
497 PF01436 NHL: NHL repeat; Int 74.9 9.6 0.00021 19.7 3.8 25 16-40 4-28 (28)
498 KOG4659 Uncharacterized conser 74.5 1.4E+02 0.003 32.7 24.2 26 217-242 660-685 (1899)
499 PF05935 Arylsulfotrans: Aryls 74.1 91 0.002 30.5 15.7 110 69-179 226-371 (477)
500 COG1506 DAP2 Dipeptidyl aminop 74.1 68 0.0015 32.7 12.7 161 218-397 59-234 (620)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-54 Score=356.27 Aligned_cols=316 Identities=23% Similarity=0.352 Sum_probs=273.9
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCe
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGE 78 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~ 78 (519)
...||.++|.|++|+|+|..||+|+.|.++|+||+.+..+.. ++.+|.+.|.+++|+|| +|.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---------t~KgH~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---------TCKGHKNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---------eecCCccEEEEEEECCCcchhhccccCCe
Confidence 346899999999999999999999999999999999887544 47789999999999999 499
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST-----DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
|++||..+++ +....+.+|...|++++|-| ..++||+++.||.|+|||+..+.++..+.+|+.+|+|+.|
T Consensus 181 I~lwdpktg~-----~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 181 IRLWDPKTGQ-----QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred EEEecCCCCC-----cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 9999998874 45678899999999999976 5679999999999999999999999999999999999999
Q ss_pred cCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc------
Q 010051 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS------ 227 (519)
Q Consensus 154 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s------ 227 (519)
--+ .+|++++.|++|++|+...+....... .|...|+.++.+
T Consensus 256 GG~-gliySgS~DrtIkvw~a~dG~~~r~lk-------------------------------GHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 256 GGE-GLIYSGSQDRTIKVWRALDGKLCRELK-------------------------------GHAHWVNHLALSTDYVLR 303 (480)
T ss_pred cCC-ceEEecCCCceEEEEEccchhHHHhhc-------------------------------ccchheeeeeccchhhhh
Confidence 754 589999999999999988865432222 122222222222
Q ss_pred -----c-------------------------CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEE
Q 010051 228 -----P-------------------------DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAV 277 (519)
Q Consensus 228 -----p-------------------------~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~ 277 (519)
| .+..|++++.+ ..+++|+.....+++....+|..-|+.+
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd----------~tlflW~p~~~kkpi~rmtgHq~lVn~V 373 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD----------FTLFLWNPFKSKKPITRMTGHQALVNHV 373 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC----------ceEEEecccccccchhhhhchhhheeeE
Confidence 2 23457777766 6999999988888999999999999999
Q ss_pred EEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010051 278 RFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLV 357 (519)
Q Consensus 278 ~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 357 (519)
.||||+ ++|++++.|..|++|+.++|+.+..|++ |-..|+.++|+.|.++|++|+.|.++++|
T Consensus 374 ~fSPd~----------------r~IASaSFDkSVkLW~g~tGk~lasfRG-Hv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 374 SFSPDG----------------RYIASASFDKSVKLWDGRTGKFLASFRG-HVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred EECCCc----------------cEEEEeecccceeeeeCCCcchhhhhhh-ccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 999999 6789999999999999999999999999 99999999999999999999999999999
Q ss_pred EecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 358 EFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 358 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
++.+.++ ...++||. ..|.++.|+|||.++++++.|+.+
T Consensus 437 ~V~tkKl--~~DLpGh~----DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 437 DVRTKKL--KQDLPGHA----DEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred Eeeeeee--cccCCCCC----ceEEEEEecCCCceeecCCCceEE
Confidence 9998864 34566765 689999999999999999999887
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-46 Score=313.25 Aligned_cols=284 Identities=21% Similarity=0.340 Sum_probs=252.4
Q ss_pred CCCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC------
Q 010051 2 KGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------ 75 (519)
Q Consensus 2 ~~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 75 (519)
+..++....+|...|.|++|+|||+.||+|+.||.|++||..+|+.. ...+.+|...|++++|-|-
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--------g~~l~gH~K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--------GRALRGHKKWITALAWEPLHLVPPC 217 (480)
T ss_pred CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc--------cccccCcccceeEEeecccccCCCc
Confidence 34566777899999999999999999999999999999999999864 4568999999999999774
Q ss_pred --------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccC
Q 010051 76 --------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY 147 (519)
Q Consensus 76 --------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 147 (519)
||.|+|||+..+ .++..+.+|+.+|+|+.|--+| +|++|+.|++|++|+...|.+.+.+++|...
T Consensus 218 r~las~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw 290 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW 290 (480)
T ss_pred cceecccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence 799999999887 7899999999999999997554 8999999999999999999999999999999
Q ss_pred eEEEEEc-----------CCCC-------------------------eEEEeeCCCeEEEEecCCCCccccccccceeeE
Q 010051 148 VQGVAWD-----------PLSK-------------------------YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQH 191 (519)
Q Consensus 148 v~~~~~~-----------~~~~-------------------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 191 (519)
|+.++.+ |.++ .|++|+.|.++.+|+....+.
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk------------ 358 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK------------ 358 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc------------
Confidence 9999877 2233 499999999999998765431
Q ss_pred EEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCC
Q 010051 192 VITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGAS 271 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 271 (519)
.+.....|+.-|+.+.||||++++++++-+ ..|++|+.+++ +.+..+.+|-
T Consensus 359 ------------------pi~rmtgHq~lVn~V~fSPd~r~IASaSFD----------kSVkLW~g~tG-k~lasfRGHv 409 (480)
T KOG0271|consen 359 ------------------PITRMTGHQALVNHVSFSPDGRYIASASFD----------KSVKLWDGRTG-KFLASFRGHV 409 (480)
T ss_pred ------------------chhhhhchhhheeeEEECCCccEEEEeecc----------cceeeeeCCCc-chhhhhhhcc
Confidence 123344677889999999999999998877 69999999764 6678899999
Q ss_pred CCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010051 272 KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD 351 (519)
Q Consensus 272 ~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 351 (519)
..|+.++|+.|. +++++|+.|.++++|++++.+....+.+ |...|.++.|+|||..+++|+.|
T Consensus 410 ~~VYqvawsaDs----------------RLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 410 AAVYQVAWSADS----------------RLLVSGSKDSTLKVWDVRTKKLKQDLPG-HADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred ceeEEEEeccCc----------------cEEEEcCCCceEEEEEeeeeeecccCCC-CCceEEEEEecCCCceeecCCCc
Confidence 999999999988 7789999999999999999999999999 99999999999999999999999
Q ss_pred CcEEEEE
Q 010051 352 GYCTLVE 358 (519)
Q Consensus 352 g~i~vwd 358 (519)
..+++|.
T Consensus 473 kv~~lw~ 479 (480)
T KOG0271|consen 473 KVLRLWR 479 (480)
T ss_pred eEEEeec
Confidence 9999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-46 Score=317.05 Aligned_cols=277 Identities=24% Similarity=0.347 Sum_probs=253.0
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-----------CC
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-----------GG 77 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~ 77 (519)
..+.+.+|..+.||+|++.||||+.+|.++||+..+...+ ..+.+|...+.++.|+|. ||
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---------~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---------QTLRGHTSRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---------EEEeccccceeeEEEccCCCccceeeeccCC
Confidence 3577899999999999999999999999999999888643 347789999999999987 58
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCC
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLS 157 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 157 (519)
++++|++.+. ..+..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+....+|...|.+++|++||
T Consensus 242 tvklw~~~~e------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 242 TVKLWKLSQE------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred ceeeeccCCC------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 9999999887 6889999999999999999999999999999999999999999988889999999999999999
Q ss_pred CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEec
Q 010051 158 KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPA 237 (519)
Q Consensus 158 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 237 (519)
.+++||+.|..-+|||+++++. +.....|...|.+++|+|+|..|++++
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~-------------------------------im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRC-------------------------------IMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred ceeeccCccchhheeecccCcE-------------------------------EEEecccccceeeEeECCCceEEeecC
Confidence 9999999999999999999863 233345778899999999999999999
Q ss_pred CCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC
Q 010051 238 GSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~ 317 (519)
++ +.++|||++.. ..+..+++|..-|+.+.|+|... .++++++.|+++++|...
T Consensus 365 ~D----------nt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g---------------~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 365 SD----------NTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEG---------------YFLVTASYDNTVKIWSTR 418 (459)
T ss_pred CC----------CcEEEeeeccc-ccceecccccchhhheEecccCC---------------eEEEEcccCcceeeecCC
Confidence 88 79999999765 45888999999999999999432 678999999999999999
Q ss_pred CCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 318 SVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
++.++..+.+ |.+.|.++.+++|++++++++.|.++++|.
T Consensus 419 ~~~~~ksLaG-He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAG-HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcC-CccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999 999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.3e-41 Score=270.77 Aligned_cols=286 Identities=19% Similarity=0.263 Sum_probs=248.2
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC--------
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG-------- 76 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 76 (519)
..+++.+|.+.|.++.|++|.++|++++.||.+.|||.-+......++. ....|..++|+|.+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------PSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---------CceeEEEEEECCCCCeEEecCc
Confidence 3477899999999999999999999999999999999988876655442 46789999999985
Q ss_pred -CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC
Q 010051 77 -GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 77 -~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 155 (519)
+...||++.+..........+.+.+|++.+.|+.|-+| .+|+|++.|.++.+||+++|+.+..|.+|.+.|.++.++|
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred CceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 55679999876555555677889999999999999874 5799999999999999999999999999999999999999
Q ss_pred -CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEE
Q 010051 156 -LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLL 234 (519)
Q Consensus 156 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 234 (519)
+++.|++|+.|+..++||++.+.. .+. ...|.+.|+++.|.|+|.-++
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c----------~qt---------------------F~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQC----------VQT---------------------FEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred CCCCeEEecccccceeeeeccCcce----------eEe---------------------ecccccccceEEEccCCCeee
Confidence 999999999999999999998742 222 235678899999999999999
Q ss_pred EecCCcceeeeecccceEEEEeccCCCcc-cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE
Q 010051 235 VPAGSYKISSMSESINSAYIFSRKDLSRP-ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI 313 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v 313 (519)
+++.+ +..++||++..... +..-.....+|++++||..| +++++|..|..+.+
T Consensus 246 tGSDD----------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG----------------RlLfagy~d~~c~v 299 (343)
T KOG0286|consen 246 TGSDD----------ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG----------------RLLFAGYDDFTCNV 299 (343)
T ss_pred ecCCC----------ceeEEEeecCCcEEeeeccCcccCCceeEEEcccc----------------cEEEeeecCCceeE
Confidence 98887 79999999865432 22233445689999999998 77888889999999
Q ss_pred EeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 314 YDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 314 wd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
||.-.++.+..+.+ |.+.|+++..+|||..|++|+.|.+++||.
T Consensus 300 WDtlk~e~vg~L~G-HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 300 WDTLKGERVGVLAG-HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeccccceEEEeec-cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999 999999999999999999999999999994
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-40 Score=283.75 Aligned_cols=409 Identities=17% Similarity=0.198 Sum_probs=279.4
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC--------
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG-------- 76 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 76 (519)
...+..+|..+|+-..|||.|-|+|+|...|.|||||....+.+.. ..+....++|..++|++++
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-------nef~v~aG~I~Di~Wd~ds~RI~avGE 123 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-------NEFQVLAGPIKDISWDFDSKRIAAVGE 123 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-------eeeeecccccccceeCCCCcEEEEEec
Confidence 3456778999999999999999999999999999999876433221 1233344556666666653
Q ss_pred -----CeEEEEEcccC-----------------------------------CCcccceeeeccccCCCCeEEEEEcCCCC
Q 010051 77 -----GELIIWKLHTT-----------------------------------ETGQAWKVLKNLSFHRKDVLDLQWSTDGA 116 (519)
Q Consensus 77 -----~~i~vw~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 116 (519)
|.+.+||--+. -.+..++....+..|..-|.|+.|+|||.
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS 203 (603)
T ss_pred CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC
Confidence 23334443211 01234455666777999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEec---ccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccce----e
Q 010051 117 FLLSGSVDNSCIIWDVNKGSVLQILD---AHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYV----C 189 (519)
Q Consensus 117 ~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~ 189 (519)
++++++.||+|.+||=.+|+.+..+. +|.+.|.++.|+||+..|+|++.|.+++|||+.+.+......+... .
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 99999999999999999999999997 8999999999999999999999999999999998865443332221 1
Q ss_pred eEEE---------eccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCC
Q 010051 190 QHVI---------TKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDL 260 (519)
Q Consensus 190 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~ 260 (519)
..++ +..+........... .+.....|...|++++.+|++++|++++.+ +.|.-|+....
T Consensus 284 vG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD----------G~I~~W~~~~g 352 (603)
T KOG0318|consen 284 VGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYD----------GHINSWDSGSG 352 (603)
T ss_pred EEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccC----------ceEEEEecCCc
Confidence 1111 111111111111122 334456788999999999999999999988 46666666544
Q ss_pred CcccccCCCCCCCeEEEEEcCCcccccccCC------------------------------------------CCcc---
Q 010051 261 SRPALQLPGASKPVVAVRFCPLAFNLRESNS------------------------------------------AGFF--- 295 (519)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------------------------------------~g~~--- 295 (519)
......-.+|...|.+++-+..+.++.++.. .+.+
T Consensus 353 ~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~ 432 (603)
T KOG0318|consen 353 TSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ 432 (603)
T ss_pred cccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe
Confidence 3322222344444444444332222221111 1100
Q ss_pred -------------------cccceEEEEEecCCeEEEEeCCCCCce--EEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010051 296 -------------------KLPYRLIFAIATLNSLYIYDTESVPPI--AILAGLHYAAITDIAWSNNARYLALSSQDGYC 354 (519)
Q Consensus 296 -------------------~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 354 (519)
......++.|+.|+.|+||.+..+... ..+.. |.++|+++++|||+.|||++...+.+
T Consensus 433 ~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~-h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 433 DQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE-HRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred cCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec-ccCCceEEEECCCCcEEEEeccCCcE
Confidence 013367899999999999999876533 34445 99999999999999999999999999
Q ss_pred EEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCCCCcc--ccccc--------cCCCce
Q 010051 355 TLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKEPDKR--KTEAE--------TKDDET 423 (519)
Q Consensus 355 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~~~~~--~~~~~--------~~~~~~ 423 (519)
.+||+.+.+. ......- +...+.+++|+|+..++|+|+-|..| +|........ +..+. =.++..
T Consensus 512 v~yd~~s~~~-~~~~w~F----HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 512 VLYDVASREV-KTNRWAF----HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST 586 (603)
T ss_pred EEEEcccCce-ecceeee----eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCce
Confidence 9999998865 2222222 34689999999999999999988877 6665542221 11111 123334
Q ss_pred EEeccccceeeeec
Q 010051 424 AINGSIAAESRLIE 437 (519)
Q Consensus 424 ~~~~~~~~~~~~~~ 437 (519)
+++...|..+++|.
T Consensus 587 vvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 587 VVSSGQDANIKVWN 600 (603)
T ss_pred EEeccCcceeEEec
Confidence 55566666666664
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=261.44 Aligned_cols=269 Identities=19% Similarity=0.305 Sum_probs=229.1
Q ss_pred CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC--------CeEEEEEcccCCCcccceeee
Q 010051 26 GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG--------GELIIWKLHTTETGQAWKVLK 97 (519)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~i~vw~~~~~~~~~~~~~~~ 97 (519)
-+||+++.|.+||+|...+|.+.++++ .....|+.+.+.|+. ..|++||+++... ..+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq---------h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np----~Pv~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ---------HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP----NPVA 77 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe---------cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC----Ccee
Confidence 389999999999999999999887754 245679999999994 6799999998754 4678
Q ss_pred ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 98 NLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 98 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
.+.+|+..|+++.|..+|+++++|+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+...
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 889999999999999999999999999999999999966655554 6799999999999999999999999999999886
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEec
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSR 257 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~ 257 (519)
...... .......|.+++..|||.+++++... +++++|++
T Consensus 157 ~c~~~l------------------------------iPe~~~~i~sl~v~~dgsml~a~nnk----------G~cyvW~l 196 (311)
T KOG0315|consen 157 SCTHEL------------------------------IPEDDTSIQSLTVMPDGSMLAAANNK----------GNCYVWRL 196 (311)
T ss_pred cccccc------------------------------CCCCCcceeeEEEcCCCcEEEEecCC----------ccEEEEEc
Confidence 421100 01223568899999999999998776 79999998
Q ss_pred cCCC-----cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceEEEeccccc
Q 010051 258 KDLS-----RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIAILAGLHYA 331 (519)
Q Consensus 258 ~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~ 331 (519)
-... .++..+..|+..+..+.+|||+ ++|++++.|.+++||+..+. +....+.+ |..
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~----------------k~lat~ssdktv~iwn~~~~~kle~~l~g-h~r 259 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDV----------------KYLATCSSDKTVKIWNTDDFFKLELVLTG-HQR 259 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCC----------------cEEEeecCCceEEEEecCCceeeEEEeec-CCc
Confidence 5432 4566788999999999999999 56788888889999999987 56667778 999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCccc
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFENDELG 365 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~ 365 (519)
.+.+++||.||+||++|+.|+.+++|++..++..
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 9999999999999999999999999999988643
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-40 Score=263.09 Aligned_cols=295 Identities=18% Similarity=0.243 Sum_probs=244.4
Q ss_pred EecCCCCCEEEEEEecCC-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 8 INWHDTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
.+.+|++.|+.++..+.+ ..|++++.|.++.+|++..... ..
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------------------------------------~~ 52 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------------------------------------KY 52 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-------------------------------------cc
Confidence 557899999999999885 5888999999999999875421 11
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 166 (519)
+ ..++.+.||...|..+..++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|
T Consensus 53 G------~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 53 G------VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred C------ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc
Confidence 1 5678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC--CCeEEEecCCcceee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD--GSFLLVPAGSYKISS 244 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~~~~~~~ 244 (519)
.+|++|++..... .. .....+...|.++.|+|+ ..+|+.++.+
T Consensus 127 kTiklwnt~g~ck-----------~t-------------------~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D----- 171 (315)
T KOG0279|consen 127 KTIKLWNTLGVCK-----------YT-------------------IHEDSHREWVSCVRFSPNESNPIIVSASWD----- 171 (315)
T ss_pred ceeeeeeecccEE-----------EE-------------------EecCCCcCcEEEEEEcCCCCCcEEEEccCC-----
Confidence 9999999876421 11 111122678999999998 6777777766
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
..+++||+++. +....+.+|.+.++.+++|||| ..+++|+.||.+.+||++.++.++.
T Consensus 172 -----ktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDG----------------slcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 172 -----KTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDG----------------SLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred -----ceEEEEccCCc-chhhccccccccEEEEEECCCC----------------CEEecCCCCceEEEEEccCCceeEe
Confidence 79999999754 5566788999999999999999 5677788888999999999999888
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcc---cccCCCCcccccCCccEEEeecCCce
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKV---SKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
+. |...|.+++|+|+..+|+.+. +..|+|||++++.....+.+..... ........++||+||..|.++-.++.
T Consensus 230 l~--a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 230 LE--AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred cc--CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 87 688999999999987776654 5669999999987766665554432 22344567899999999999998877
Q ss_pred e-eec
Q 010051 402 V-TAE 405 (519)
Q Consensus 402 i-~~~ 405 (519)
| +|.
T Consensus 307 irv~q 311 (315)
T KOG0279|consen 307 IRVWQ 311 (315)
T ss_pred EEEEE
Confidence 7 443
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-41 Score=284.41 Aligned_cols=270 Identities=20% Similarity=0.275 Sum_probs=239.7
Q ss_pred ccCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEE
Q 010051 62 YHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD--GAFLLSGSVDNSCIIW 130 (519)
Q Consensus 62 ~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw 130 (519)
+...++..+.|+.+ +|.++||+..+. ..+..+.+|...|.++.|+|. +..||+|+.||++++|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 45667888888887 489999999877 678899999999999999996 6689999999999999
Q ss_pred EcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccce
Q 010051 131 DVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNH 210 (519)
Q Consensus 131 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (519)
++.+..+++.+.+|...|..++|+|+|++|+|++.|.+-++||+.++..
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E------------------------------- 295 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE------------------------------- 295 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-------------------------------
Confidence 9999999999999999999999999999999999999999999998753
Q ss_pred eeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccC
Q 010051 211 LFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESN 290 (519)
Q Consensus 211 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 290 (519)
++....|...|.+++|.|||..+++|+-+ ..-+|||++++ .++..+.+|..+|..|.|+|+|
T Consensus 296 lL~QEGHs~~v~~iaf~~DGSL~~tGGlD----------~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNG------- 357 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGSLAATGGLD----------SLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNG------- 357 (459)
T ss_pred hHhhcccccccceeEecCCCceeeccCcc----------chhheeecccC-cEEEEecccccceeeEeECCCc-------
Confidence 34455788889999999999999998877 57899999865 6788899999999999999999
Q ss_pred CCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEecCCcccceee
Q 010051 291 SAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSN-NARYLALSSQDGYCTLVEFENDELGIPIS 369 (519)
Q Consensus 291 ~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~ 369 (519)
..+++|+.|++++|||++....+.++.+ |..-|+.+.|+| .|.+|+|++.|++++||.-.+.... ..
T Consensus 358 ---------y~lATgs~Dnt~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~--ks 425 (459)
T KOG0272|consen 358 ---------YHLATGSSDNTCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL--KS 425 (459)
T ss_pred ---------eEEeecCCCCcEEEeeecccccceeccc-ccchhhheEecccCCeEEEEcccCcceeeecCCCcccc--hh
Confidence 4577788888999999999999999999 999999999999 7899999999999999998776433 34
Q ss_pred ecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 370 LSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
+.||. +.|.++..++|+.++++++.|.++
T Consensus 426 LaGHe----~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 426 LAGHE----GKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred hcCCc----cceEEEEeccCCceEEEeccCcee
Confidence 44554 689999999999999999999887
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-37 Score=268.65 Aligned_cols=366 Identities=20% Similarity=0.234 Sum_probs=270.0
Q ss_pred CCCeeEEe---cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---
Q 010051 2 KGGTLQIN---WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--- 75 (519)
Q Consensus 2 ~~~~~~~~---~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 75 (519)
+|-++++. ..|+.-|.|+.|||||.++|+++.||.|.|||=.+|+.+..+.. -.+|.+.|++++|+||
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~------~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED------SDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC------CCCccccEEEEEECCCCce
Confidence 34445443 46889999999999999999999999999999999998775432 3479999999999999
Q ss_pred ------CCeEEEEEcccCCCcc-------------------------------------cceeeeccccCCCCeEEEEEc
Q 010051 76 ------GGELIIWKLHTTETGQ-------------------------------------AWKVLKNLSFHRKDVLDLQWS 112 (519)
Q Consensus 76 ------~~~i~vw~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~s 112 (519)
|.+++|||+.+....+ ....+..+.||...|++++.+
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS 329 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence 5788999987653211 112345577899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCceEEEe-cccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccc--ccccee
Q 010051 113 TDGAFLLSGSVDNSCIIWDVNKGSVLQIL-DAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVE--KMNYVC 189 (519)
Q Consensus 113 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~ 189 (519)
+|+++|++|+.||.|.-|+..+|..-+.. ..|...|.+++-+.. ..+++++.|.++++.++......... .+..++
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP 408 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES-GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP 408 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC-CcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence 99999999999999999999988765443 779999999998753 46888999999999988665443332 333333
Q ss_pred eEEEeccCcccccCCccccceeee------cCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC-c
Q 010051 190 QHVITKAGQHSTDDSKSAKNHLFH------DETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS-R 262 (519)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~ 262 (519)
...-...+.............++. .....-...+++++|++..+++++.+ +.+++|.+.... .
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D----------gkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD----------GKVHVYSLSGDELK 478 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc----------ceEEEEEecCCccc
Confidence 322222221111111111111111 11233456689999999999999888 689999997654 4
Q ss_pred ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCC
Q 010051 263 PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNA 342 (519)
Q Consensus 263 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g 342 (519)
....+..|.++|++++||||+. +|+++...+.+.+||+.+.+........|...|.+++|+|+.
T Consensus 479 ee~~~~~h~a~iT~vaySpd~~----------------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSPDGA----------------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ceeeeecccCCceEEEECCCCc----------------EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 4446778999999999999994 456666667999999999887665555699999999999999
Q ss_pred CEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeec
Q 010051 343 RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAE 405 (519)
Q Consensus 343 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~ 405 (519)
.++|+|+.|-+|.||+++..... +.+.+.. ...++.+.|-.+..++.+|.+-.+-+|.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~--i~iknAH---~~gVn~v~wlde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKH--IIIKNAH---LGGVNSVAWLDESTVVSSGQDANIKVWN 600 (603)
T ss_pred eEEEeccccceEEEEEccChhhh--eEecccc---ccCceeEEEecCceEEeccCcceeEEec
Confidence 99999999999999999876433 3333322 3458999998766655555444444664
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=286.01 Aligned_cols=398 Identities=20% Similarity=0.263 Sum_probs=303.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-----------CCeE
Q 010051 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-----------GGEL 79 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~i 79 (519)
.|.++|.-++|+|.+.+||+|+.|+.++|||+..+.+.. .+.+|++.|.++.|.|+ |+.+
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---------~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---------SFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---------EecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 399999999999999999999999999999999887554 47889999999999886 7999
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC---
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL--- 156 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~--- 156 (519)
++||+.... .++..+..|.+.|++++|++|+..++++++|..+.+||+.+.+....+... ..+-++.+-++
T Consensus 174 ~vwnl~~~~-----tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 174 RVWNLNDKR-----TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELG 247 (775)
T ss_pred EEEEcccCc-----hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcC
Confidence 999998653 267788889999999999999999999999999999999777766665433 45666777666
Q ss_pred --CCeEEEeeCCCeEEEEecCCCCccccccccce--eeEEEec-cCcccccCCcccccee---------eecCCCcceee
Q 010051 157 --SKYVASLSSDRTCRIYANRPTKSKGVEKMNYV--CQHVITK-AGQHSTDDSKSAKNHL---------FHDETLPSFFR 222 (519)
Q Consensus 157 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~i~ 222 (519)
+.+++|+|.+|.+++||..+++.......+.. ..+.... ...............+ .........|.
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence 67999999999999999988764332222210 0000000 0001111111111111 12233456677
Q ss_pred EEEE-ccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccc--
Q 010051 223 RLAW-SPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPY-- 299 (519)
Q Consensus 223 ~~~~-sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~-- 299 (519)
.+.| .|+.+++++++.. +.+++|+..+... ..+.+|...|.++....+|..|++++.|..+.+|+
T Consensus 328 Dm~~lG~e~~~laVATNs----------~~lr~y~~~~~~c--~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNS----------PELRLYTLPTSYC--QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred eeeecCCccceEEEEeCC----------CceEEEecCCCce--EEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 7776 4678899998877 6899998765433 37889999999999777888999999988877662
Q ss_pred -----------------------------eEEEEEecCCeEEEEeCCCCCc-----eE----EEeccccccEEEEEEcCC
Q 010051 300 -----------------------------RLIFAIATLNSLYIYDTESVPP-----IA----ILAGLHYAAITDIAWSNN 341 (519)
Q Consensus 300 -----------------------------~~~~~~~~d~~i~vwd~~~~~~-----~~----~~~~~~~~~i~~~~~s~~ 341 (519)
.++++++.|.++++|++...+. +. +... |...|++++.+|+
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a-HdKdIN~Vaia~n 474 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA-HDKDINCVAIAPN 474 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh-hcccccceEecCC
Confidence 6799999999999999876221 11 2234 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCCCCc---------
Q 010051 342 ARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKEPDK--------- 411 (519)
Q Consensus 342 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~~~~--------- 411 (519)
.+++||||.|.+.+||+++. ....-.+.||. .+++++.|++.++.+++++.|+++ +|...+...
T Consensus 475 dkLiAT~SqDktaKiW~le~--~~l~~vLsGH~----RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQ--LRLLGVLSGHT----RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred CceEEecccccceeeecccC--ceEEEEeeCCc----cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence 99999999999999999994 44566777887 599999999999999999999999 777665221
Q ss_pred -cccccccCCCceEEeccccceeeeecccccc
Q 010051 412 -RKTEAETKDDETAINGSIAAESRLIEPERNE 442 (519)
Q Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (519)
......-..+..++++..++...+|+-..++
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 1222234566788899999999999555443
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.2e-38 Score=267.95 Aligned_cols=330 Identities=22% Similarity=0.346 Sum_probs=267.9
Q ss_pred EEecCCCCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCC--cccccccccc---ccccccccCcceeEEEEccC-----
Q 010051 7 QINWHDTKPVLTLDFHPISG-LLATGGADYDIKIWLINSG--EKQKKIPTAS---YQNSLSYHGSAINILRFSPC----- 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~--~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~----- 75 (519)
++.. |..+|++.+|+|-.. +||+|+.|-..++|++... .......... ....-......|++++|+.+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4444 999999999999877 9999999999999998751 1111000000 00011123467899999976
Q ss_pred ----CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEE
Q 010051 76 ----GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGV 151 (519)
Q Consensus 76 ----~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 151 (519)
+|.++||+.... .+..+..|.++|.++.|+.+|.+|++++.|+++.+||..+|...+.+..|..+-..+
T Consensus 252 tG~~~G~~riw~~~G~-------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGN-------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred EeecCcEEEEEecCch-------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence 599999998754 677888899999999999999999999999999999999999999999998887788
Q ss_pred EEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 152 AWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 152 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
.|-. ...|++++.||.|+++.+....+ +.....|.+.|..+.|+|.|.
T Consensus 325 dW~~-~~~F~ts~td~~i~V~kv~~~~P-------------------------------~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 325 DWQS-NDEFATSSTDGCIHVCKVGEDRP-------------------------------VKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred EEec-CceEeecCCCceEEEEEecCCCc-------------------------------ceeeecccCceEEEEECCCCc
Confidence 9974 46799999999999999876543 122234788999999999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSL 311 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i 311 (519)
.|++++.+ ++++||+... ......+..|...|..+.|+|.|...-. ...+ ..+++++.|++|
T Consensus 373 LLaS~SdD----------~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n-~~~~------~~l~sas~dstV 434 (524)
T KOG0273|consen 373 LLASCSDD----------GTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSN-PNMN------LMLASASFDSTV 434 (524)
T ss_pred eEEEecCC----------CeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCC-CcCC------ceEEEeecCCeE
Confidence 99999888 7999999864 3567788999999999999999854211 1122 568999999999
Q ss_pred EEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCcc
Q 010051 312 YIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDM 391 (519)
Q Consensus 312 ~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 391 (519)
++||+..+.++..|.. |..+|.+++|||+|+|||+|+.||.|.+|++..+++.+.+. ....|..++|+.+|.
T Consensus 435 ~lwdv~~gv~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 435 KLWDVESGVPIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------GTGGIFELCWNAAGD 506 (524)
T ss_pred EEEEccCCceeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------CCCeEEEEEEcCCCC
Confidence 9999999999999988 99999999999999999999999999999999987655543 235689999999998
Q ss_pred EEEeecCCcee
Q 010051 392 IIEASTNDKLV 402 (519)
Q Consensus 392 ~l~~~~~d~~i 402 (519)
+|..+-.|+.+
T Consensus 507 kl~~~~sd~~v 517 (524)
T KOG0273|consen 507 KLGACASDGSV 517 (524)
T ss_pred EEEEEecCCCc
Confidence 88777666655
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.6e-39 Score=293.37 Aligned_cols=275 Identities=21% Similarity=0.312 Sum_probs=227.4
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
-...|+|..|++|+.+||.|..|..|++|.+...+ ++.++. ...+.-+....+|-.+.+.|....
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~----------~~~l~~~d~~sad~~~~~~D~~~~---- 441 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKD----------ASDLSNIDTESADVDVDMLDDDSS---- 441 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccc----------hhhhccccccccchhhhhccccCC----
Confidence 34679999999999999999999999999987543 222221 111111111112222333443333
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
.....+.+|.++|..+.|+|+.++|++++.|++|++|.+.+..++..+++|..+|+.+.|+|.|-+|||++.|++.++
T Consensus 442 --~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 442 --GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred --ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 345568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
|......+..+ ...|.+.|.|+.|+|++.|+++++.+ ..
T Consensus 520 Ws~d~~~PlRi-------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD----------~t 558 (707)
T KOG0263|consen 520 WSTDHNKPLRI-------------------------------FAGHLSDVDCVSFHPNSNYVATGSSD----------RT 558 (707)
T ss_pred eecccCCchhh-------------------------------hcccccccceEEECCcccccccCCCC----------ce
Confidence 98877543221 12455778899999999999999877 79
Q ss_pred EEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc
Q 010051 252 AYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA 331 (519)
Q Consensus 252 i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 331 (519)
+++||..++ ..++.+.||.++|.+++|||+| +++++|+.||.|.+||+.++.++..+.+ |.+
T Consensus 559 VRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~G----------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht~ 620 (707)
T KOG0263|consen 559 VRLWDVSTG-NSVRIFTGHKGPVTALAFSPCG----------------RYLASGDEDGLIKIWDLANGSLVKQLKG-HTG 620 (707)
T ss_pred EEEEEcCCC-cEEEEecCCCCceEEEEEcCCC----------------ceEeecccCCcEEEEEcCCCcchhhhhc-ccC
Confidence 999999765 5578889999999999999999 5677777788999999999999999999 999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
.|+++.||.+|..||+|+.|.+|++||+...
T Consensus 621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 621 TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999998754
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-37 Score=278.89 Aligned_cols=318 Identities=19% Similarity=0.305 Sum_probs=261.1
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC----------CeEEE
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG----------GELII 81 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~i~v 81 (519)
....|+|.+|++..++||+|-..|...+|.+..-..++. +.-....|..++|+..| |++.|
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~---------LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS---------LSISDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE---------eecccceeeEEEecccCCEEEEcCCccceEEE
Confidence 347899999999999999999999999999887775543 44456778888887664 78999
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
|++.+. ..+...++|...+++++++|||+++|+|+.||.|+|||..+|-++.++..|+..|+.+.|+..++.++
T Consensus 335 weWqsE------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 335 WEWQSE------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred EEeecc------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEE
Confidence 999887 67777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
+.+-||+|+.||+...+ +.+.+.. +-+....+++..|.|..+++++.+.
T Consensus 409 ssSLDGtVRAwDlkRYr----------NfRTft~--------------------P~p~QfscvavD~sGelV~AG~~d~- 457 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYR----------NFRTFTS--------------------PEPIQFSCVAVDPSGELVCAGAQDS- 457 (893)
T ss_pred EeecCCeEEeeeecccc----------eeeeecC--------------------CCceeeeEEEEcCCCCEEEeeccce-
Confidence 99999999999998754 2222221 1233456899999999999887663
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC-
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP- 320 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~- 320 (519)
-.|++|++.+ ++.+..+.||+++|.++.|+|++ ..+++++.|.+|++||+-...
T Consensus 458 --------F~IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~----------------~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 458 --------FEIFVWSVQT-GQLLDILSGHEGPVSGLSFSPDG----------------SLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred --------EEEEEEEeec-CeeeehhcCCCCcceeeEEcccc----------------CeEEeccccceEEEEEeeccCc
Confidence 4899999975 46778899999999999999998 668999999999999987543
Q ss_pred ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCccccee----ee-cC---------CcccccCCCCcccc
Q 010051 321 PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPI----SL-SG---------NKVSKDENKSPLVT 386 (519)
Q Consensus 321 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~----~~-~~---------~~~~~~~~~~~~~~ 386 (519)
.+.++. +...+..++|+|+|+.|++++.||.|.+||+........+ .+ .+ ........++.+++
T Consensus 513 ~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 513 TVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY 590 (893)
T ss_pred eeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence 344444 5778999999999999999999999999998765322111 00 00 01123457888999
Q ss_pred cCCccEEEeecCCcee
Q 010051 387 KSEDMIIEASTNDKLV 402 (519)
Q Consensus 387 s~~~~~l~~~~~d~~i 402 (519)
|+||..|++|+....|
T Consensus 591 SaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 591 SADGKCILAGGESNSI 606 (893)
T ss_pred cCCCCEEEecCCcccE
Confidence 9999999999987777
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-37 Score=246.54 Aligned_cols=249 Identities=21% Similarity=0.261 Sum_probs=207.1
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEE
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIW 82 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw 82 (519)
|..++.+.||...|..++.++||++.++++.|+++++||+.+++
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~------------------------------------ 96 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE------------------------------------ 96 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc------------------------------------
Confidence 56788899999999999999999999999999999999999875
Q ss_pred EcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccc--ccCeEEEEEcCC--CC
Q 010051 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH--FHYVQGVAWDPL--SK 158 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~--~~ 158 (519)
..+.|.+|...|.+++|++|.+.+++|+.|.+|.+|++-.. +..++..+ ..-|.|++|+|+ ..
T Consensus 97 ------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 97 ------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred ------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 33455679999999999999999999999999999998544 44444433 789999999998 67
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
+|++++.|+++++||+++.+... ....|.+.++.+++||||..+++++.
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~-------------------------------~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRT-------------------------------TFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred EEEEccCCceEEEEccCCcchhh-------------------------------ccccccccEEEEEECCCCCEEecCCC
Confidence 89999999999999999865321 12246788999999999999999777
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
+ +.+.+||++.... ....++...|.+++|+|+ ++.++...+..|+|||+.+
T Consensus 213 d----------g~~~LwdL~~~k~--lysl~a~~~v~sl~fspn-----------------rywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 213 D----------GEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPN-----------------RYWLCAATATSIKIWDLES 263 (315)
T ss_pred C----------ceEEEEEccCCce--eEeccCCCeEeeEEecCC-----------------ceeEeeccCCceEEEeccc
Confidence 7 7999999986544 334467889999999998 4566666667799999999
Q ss_pred CCceEEEecc--------ccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 319 VPPIAILAGL--------HYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 319 ~~~~~~~~~~--------~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+.++..+... ......+++|++||+.|++|-.|+.|++|.+.
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8877665431 12335678999999999999999999999875
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.8e-37 Score=254.49 Aligned_cols=330 Identities=18% Similarity=0.249 Sum_probs=265.3
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC------
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG------ 76 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 76 (519)
...+..+..|++.|++++.+|+.+++|||+.|..-.||++.++.... .+.+|...|.++.|+.++
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---------eltgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---------ELTGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---------EecCCCCceEEEEEccCceEEEec
Confidence 34567889999999999999999999999999999999999998433 478899999999999984
Q ss_pred ---CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 77 ---GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 77 ---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
|.|+||+..++ .....+...-..+.-+.|+|-+..|+.|+.||.+++|.+.++...+.+.+|..++++=.|
T Consensus 125 dmsG~v~v~~~stg------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTG------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred CCCccEEEEEcccC------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 89999999887 334444445677889999999999999999999999999998888999999999999999
Q ss_pred cCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeE
Q 010051 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFL 233 (519)
Q Consensus 154 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 233 (519)
.|+|+.++++..||+|++|++.++++...... .......++.++..+..+
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~------------------------------~e~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ------------------------------AEGLELPCISLNLAGSTL 248 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecc------------------------------cccCcCCcccccccccee
Confidence 99999999999999999999999853211110 002234467778888888
Q ss_pred EEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE
Q 010051 234 LVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI 313 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v 313 (519)
+.+..++.....+...+.+..-+.. ........+...+.++.+.|....+ .+.++|+-||+|.|
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~---~~~~l~~~~e~~~esve~~~~ss~l-------------pL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNG---TVPELKPSQEELDESVESIPSSSKL-------------PLAACGSVDGTIAI 312 (399)
T ss_pred EeccCCccEEEEccccceEEEecCC---CCccccccchhhhhhhhhccccccc-------------chhhcccccceEEE
Confidence 8877776666555555555444332 1223344566667777777655443 56778888999999
Q ss_pred EeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEE
Q 010051 314 YDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMII 393 (519)
Q Consensus 314 wd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 393 (519)
||+...++...+. |..+|+.+.|-+ ..+|++++.+|.|+.||.+++.+. ....||. ..|..++.+|+.+++
T Consensus 313 yD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~--~~y~GH~----~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 313 YDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK--FTYTGHQ----MGILDFALSPQKRLV 383 (399)
T ss_pred Eecccchhheecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccceE--EEEecCc----hheeEEEEcCCCcEE
Confidence 9999887776666 889999999998 789999999999999999999654 4455665 589999999999999
Q ss_pred EeecCCcee
Q 010051 394 EASTNDKLV 402 (519)
Q Consensus 394 ~~~~~d~~i 402 (519)
+++++|+..
T Consensus 384 vT~s~D~~a 392 (399)
T KOG0296|consen 384 VTVSDDNTA 392 (399)
T ss_pred EEecCCCeE
Confidence 999998765
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=258.66 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=253.2
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
+-+.+|..+|+.+-|+|+-.++++++.|++|++||..+++.
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------------------------------------- 142 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------------------------------------- 142 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------------------
Confidence 34567999999999999999999999999999999998863
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK-GSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
...+++|...+..++|+..|++|++++.|-.+.+||..+ .++++.+.+|...|.++.|-|.|.++++++.
T Consensus 143 ---------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr 213 (406)
T KOG0295|consen 143 ---------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR 213 (406)
T ss_pred ---------hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc
Confidence 345567888899999999999999999999999999987 5677788899999999999999999999999
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
|.+|+.|++.++.. +.....+...|..+..+.||..+++++.+
T Consensus 214 D~tik~We~~tg~c-------------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~d------ 256 (406)
T KOG0295|consen 214 DNTIKAWECDTGYC-------------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSND------ 256 (406)
T ss_pred ccceeEEeccccee-------------------------------EEeccCchHhEEEEEecCCeeEEEecCCC------
Confidence 99999999998742 22233456688899999999999998887
Q ss_pred ecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccc----cccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNL----RESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l----~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
..+++|-..+. .+...+.+|+.+|.+++|-|...+- +++..++ ..++.+++.|++|++||+.++.+
T Consensus 257 ----qtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~-----~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 257 ----QTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNG-----GQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred ----ceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCC-----ccEEEeecccceEEEEeccCCeE
Confidence 69999998653 5567789999999999999976532 2333332 26899999999999999999999
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCce
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
+.++.+ |...|..++|+|.|+||+++..|+++++||+.+......+... ..-++++.|..+..++++|+-|..
T Consensus 327 L~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah------~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 327 LFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH------EHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred EEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC------cceeEEEecCCCCceEEeccccce
Confidence 999999 9999999999999999999999999999999988655544432 345788999999999999998877
Q ss_pred e-eec
Q 010051 402 V-TAE 405 (519)
Q Consensus 402 i-~~~ 405 (519)
+ +|+
T Consensus 400 ~KvwE 404 (406)
T KOG0295|consen 400 VKVWE 404 (406)
T ss_pred eeeee
Confidence 6 554
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-37 Score=249.15 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=238.6
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcc
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~ 85 (519)
+-.+.||.+.|+.+.|+|+|.+||+|+.|..|.+|++....
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------------------- 80 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------------------- 80 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---------------------------------------
Confidence 34568999999999999999999999999999999975432
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC-eEEEee
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK-YVASLS 164 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~ 164 (519)
+....+++|.+.|..+.|.+|++.|++++.|.+|+.||+++|+.++.+++|...|..+.-+.-|. ++.+++
T Consensus 81 --------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs 152 (338)
T KOG0265|consen 81 --------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS 152 (338)
T ss_pred --------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecC
Confidence 22334457999999999999999999999999999999999999999999999999888544444 457788
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.||++++||++........ .....++++.|...+..+.+++-+
T Consensus 153 dD~t~kl~D~R~k~~~~t~--------------------------------~~kyqltAv~f~d~s~qv~sggId----- 195 (338)
T KOG0265|consen 153 DDGTLKLWDIRKKEAIKTF--------------------------------ENKYQLTAVGFKDTSDQVISGGID----- 195 (338)
T ss_pred CCceEEEEeecccchhhcc--------------------------------ccceeEEEEEecccccceeecccc-----
Confidence 8999999999976532211 123557799999999999998777
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC----CC
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES----VP 320 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~----~~ 320 (519)
+.|++||++.. .....+.+|..+|+.+..+|+| .++++-+.|.++++||++- .+
T Consensus 196 -----n~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~g----------------s~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 196 -----NDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYG----------------SFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred -----CceeeeccccC-cceEEeecccCceeeEEeccCC----------------CccccccccceEEEEEecccCCCCc
Confidence 79999999754 5678899999999999999999 5577778888999999874 34
Q ss_pred ceEEEecccc----ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEee
Q 010051 321 PIAILAGLHY----AAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEAS 396 (519)
Q Consensus 321 ~~~~~~~~~~----~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 396 (519)
++..+.+ |. .....++|+|+++.+..|+.|..+++||.... ...+.++||. +.|.++.|+|....|.++
T Consensus 254 ~v~if~g-~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklpGh~----gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 254 CVKIFQG-HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLPGHY----GSVNEVDFHPTEPIILSC 326 (338)
T ss_pred eEEEeec-chhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcCCcc----eeEEEeeecCCCcEEEEe
Confidence 5777776 43 23457899999999999999999999998775 4677888887 699999999999999999
Q ss_pred cCCceee
Q 010051 397 TNDKLVT 403 (519)
Q Consensus 397 ~~d~~i~ 403 (519)
+.|+++.
T Consensus 327 ~sdk~i~ 333 (338)
T KOG0265|consen 327 SSDKTIY 333 (338)
T ss_pred ccCceeE
Confidence 9998874
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-38 Score=266.33 Aligned_cols=275 Identities=21% Similarity=0.320 Sum_probs=240.0
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEEEEE
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELIIWK 83 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~vw~ 83 (519)
.-.|..+.|.|+|+.|++|+..|.+.+|+..+-. ....+..|...|+++.|+++ ||.|++|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee---------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 3479999999999999999999999999874322 23447789999999999987 59999999
Q ss_pred cccCCCcccceeeeccccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEE
Q 010051 84 LHTTETGQAWKVLKNLSFHR-KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 162 (519)
.... .++.+++|. ..|++++|+|+...+++++.||+|+|||....+.-..+.+|.-.|.++.|+|...+|++
T Consensus 167 pnmn-------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 167 PNMN-------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred cchh-------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEE
Confidence 8654 455555555 89999999999999999999999999999999888889999999999999999999999
Q ss_pred eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
+|.|..|++||.+++... .....|...|..+.|+|++.+|++++.+
T Consensus 240 gskDnlVKlWDprSg~cl-------------------------------~tlh~HKntVl~~~f~~n~N~Llt~skD--- 285 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCL-------------------------------ATLHGHKNTVLAVKFNPNGNWLLTGSKD--- 285 (464)
T ss_pred ccCCceeEeecCCCcchh-------------------------------hhhhhccceEEEEEEcCCCCeeEEccCC---
Confidence 999999999999998632 2333567789999999999999998887
Q ss_pred eeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCce
Q 010051 243 SSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI 322 (519)
Q Consensus 243 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 322 (519)
..+++||++ .-+.+..+.+|...++++.|+|-.. .++.+|+.||.|..|.+...+++
T Consensus 286 -------~~~kv~DiR-~mkEl~~~r~Hkkdv~~~~WhP~~~---------------~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 286 -------QSCKVFDIR-TMKELFTYRGHKKDVTSLTWHPLNE---------------SLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred -------ceEEEEehh-HhHHHHHhhcchhhheeeccccccc---------------cceeeccCCCceEEEeccccccc
Confidence 699999998 4466788999999999999999764 45888999999999999977788
Q ss_pred EEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 323 AILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
..+...|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 77777799999999999999999999999999999754
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-37 Score=255.11 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=245.2
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------- 75 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 75 (519)
..+...+|.+.|.|+++.|-..+|++|+.|++|+|||+.+|+... ++.+|-..|..+++|+-
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---------tltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---------TLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---------eecchhheeeeeeecccCceEEEecC
Confidence 446678999999999999999999999999999999999998544 47889999999999875
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 155 (519)
|+.|+-||+... +.++.+.||-+.|.|++..|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.|
T Consensus 214 dk~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 214 DKQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred CCeeEEEechhh------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 799999999988 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEE
Q 010051 156 LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLV 235 (519)
Q Consensus 156 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 235 (519)
....+++|+.|++|++||++.++.. .....|...+++++.+|.-..+++
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~-------------------------------~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTM-------------------------------ITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred CCCceEEecCCceEEEeeeccCcee-------------------------------EeeecccceeeEEecCCchhhhhc
Confidence 8899999999999999999988632 222345677889999999998888
Q ss_pred ecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
++.+ .++-|++..... +..+.+|...|+++....|+ ++++|+.+|.+.+||
T Consensus 337 as~d-----------nik~w~~p~g~f-~~nlsgh~~iintl~~nsD~-----------------v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 337 ASPD-----------NIKQWKLPEGEF-LQNLSGHNAIINTLSVNSDG-----------------VLVSGGDNGSIMFWD 387 (460)
T ss_pred cCCc-----------cceeccCCccch-hhccccccceeeeeeeccCc-----------------eEEEcCCceEEEEEe
Confidence 8776 888999976543 44588999999999999885 678888899999999
Q ss_pred CCCCCceEEEec-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 316 TESVPPIAILAG-------LHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 316 ~~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
.+++-..+.+.. .....|++.+|...|..|++|..|.+|++|.=+.
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 998765544321 0245789999999999999999999999998554
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=236.88 Aligned_cols=267 Identities=14% Similarity=0.200 Sum_probs=224.5
Q ss_pred EEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc--eEEEecccccC
Q 010051 70 LRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS--VLQILDAHFHY 147 (519)
Q Consensus 70 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~ 147 (519)
++-..-|.+|++|...++ .+..+++...+.|+.+...||++.||+++. ..|++||+++++ ++..+.+|...
T Consensus 13 LvsA~YDhTIRfWqa~tG------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTG------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred EEeccCcceeeeeehhcC------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCc
Confidence 334445899999999999 889999988899999999999999998876 569999999875 58899999999
Q ss_pred eEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc
Q 010051 148 VQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS 227 (519)
Q Consensus 148 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (519)
|+.+.|..+|+++++|++||+++|||++..... ....+.++|+++..+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q--------------------------------R~~~~~spVn~vvlh 133 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--------------------------------RNYQHNSPVNTVVLH 133 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccc--------------------------------hhccCCCCcceEEec
Confidence 999999999999999999999999999984321 112445789999999
Q ss_pred cCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec
Q 010051 228 PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 228 p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
|+...|+++..+ +.|++||+.+........+.....|.++...|||. +++++..
T Consensus 134 pnQteLis~dqs----------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs----------------ml~a~nn 187 (311)
T KOG0315|consen 134 PNQTELISGDQS----------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS----------------MLAAANN 187 (311)
T ss_pred CCcceEEeecCC----------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCc----------------EEEEecC
Confidence 999999998777 79999999876544455666678999999999994 4566666
Q ss_pred CCeEEEEeCCCC------CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCC
Q 010051 308 LNSLYIYDTESV------PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENK 381 (519)
Q Consensus 308 d~~i~vwd~~~~------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 381 (519)
.|..++|++-+. +++..+.. |.+.+..+.+|||+++||+++.|.+++||++++. +.....+.++. ..+
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~----rWv 261 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQ----RWV 261 (311)
T ss_pred CccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCC----ceE
Confidence 679999998764 35566777 9999999999999999999999999999999887 55566666665 588
Q ss_pred CcccccCCccEEEeecCCcee-eecCC
Q 010051 382 SPLVTKSEDMIIEASTNDKLV-TAETK 407 (519)
Q Consensus 382 ~~~~~s~~~~~l~~~~~d~~i-~~~~~ 407 (519)
+.++||.||.+|++++.|..+ .|+..
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccc
Confidence 999999999999999999877 55433
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=236.34 Aligned_cols=295 Identities=21% Similarity=0.373 Sum_probs=235.5
Q ss_pred eeEEecCCCCCEEEEEEecC-CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEE
Q 010051 5 TLQINWHDTKPVLTLDFHPI-SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWK 83 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~ 83 (519)
.++.+.+|+++|..++|+|- |..||+++.|..|+||+...+.. |
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------------------------------~- 50 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------------------------------W- 50 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------------------------E-
Confidence 35667899999999999998 88999999999999999875321 1
Q ss_pred cccCCCcccceeeecc-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceEEEecccccCeEEEEEcCCCCeE
Q 010051 84 LHTTETGQAWKVLKNL-SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG--SVLQILDAHFHYVQGVAWDPLSKYV 160 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l 160 (519)
.+...+ .+|...|+.++|+|.|++|++|+.|.++.||.-..+ +++..+.+|...|.+++|+++|++|
T Consensus 51 ----------~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L 120 (312)
T KOG0645|consen 51 ----------TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL 120 (312)
T ss_pred ----------EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE
Confidence 111111 259999999999999999999999999999987654 5788999999999999999999999
Q ss_pred EEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 161 ASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
|+++.|.++-||.+..... +.|..++ ..|...|..+.|+|....|++++.+
T Consensus 121 ATCSRDKSVWiWe~deddE-------fec~aVL---------------------~~HtqDVK~V~WHPt~dlL~S~SYD- 171 (312)
T KOG0645|consen 121 ATCSRDKSVWIWEIDEDDE-------FECIAVL---------------------QEHTQDVKHVIWHPTEDLLFSCSYD- 171 (312)
T ss_pred EEeeCCCeEEEEEecCCCc-------EEEEeee---------------------ccccccccEEEEcCCcceeEEeccC-
Confidence 9999999999999885432 2232222 2456678899999999999998877
Q ss_pred ceeeeecccceEEEEeccC--CCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 241 KISSMSESINSAYIFSRKD--LSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
++|++|.... .-.+...+.+|...|.+++|+|.| ..+++++.|++++||-..
T Consensus 172 ---------nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G----------------~rl~s~sdD~tv~Iw~~~- 225 (312)
T KOG0645|consen 172 ---------NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG----------------SRLVSCSDDGTVSIWRLY- 225 (312)
T ss_pred ---------CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC----------------ceEEEecCCcceEeeeec-
Confidence 6899998753 235678899999999999999998 567888888899999865
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCC-cccccCCCCcccccCC-ccEEEee
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGN-KVSKDENKSPLVTKSE-DMIIEAS 396 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~-~~~l~~~ 396 (519)
..+...|...++.+.|. ...|++++.|+.|++|.-....-...+.+... ...++..|+++.|.|. ..+|+++
T Consensus 226 ----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 226 ----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred ----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 33334488899999998 45899999999999998775422233333222 2245679999999995 6899999
Q ss_pred cCCcee-eec
Q 010051 397 TNDKLV-TAE 405 (519)
Q Consensus 397 ~~d~~i-~~~ 405 (519)
++|+.+ +|.
T Consensus 300 ~DDG~v~~W~ 309 (312)
T KOG0645|consen 300 GDDGIVNFWE 309 (312)
T ss_pred CCCceEEEEE
Confidence 999988 444
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=238.99 Aligned_cols=276 Identities=21% Similarity=0.284 Sum_probs=235.1
Q ss_pred ccccccCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010051 58 NSLSYHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128 (519)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 128 (519)
..|.+|.+.|+++.|+++ ||.+.|||..+. ...+.++-....|..++|+|.|+++|+|+.|+...
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc------cceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 458899999999999998 699999999877 34555555778999999999999999999999999
Q ss_pred EEEcCCC------ceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCccccc
Q 010051 129 IWDVNKG------SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTD 202 (519)
Q Consensus 129 vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (519)
||++.+. +..+.+.+|.+.+.++.|-+ ...|+|++-|.++.+||+.+++..
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~---------------------- 179 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT---------------------- 179 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE----------------------
Confidence 9999865 34567899999999999987 567999999999999999998632
Q ss_pred CCccccceeeecCCCcceeeEEEEcc-CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC
Q 010051 203 DSKSAKNHLFHDETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp 281 (519)
.....|.+.|.+++++| +++.+++++.+ ...++||++.. .....+.+|+..|+++.|.|
T Consensus 180 ---------~~f~GH~gDV~slsl~p~~~ntFvSg~cD----------~~aklWD~R~~-~c~qtF~ghesDINsv~ffP 239 (343)
T KOG0286|consen 180 ---------QVFHGHTGDVMSLSLSPSDGNTFVSGGCD----------KSAKLWDVRSG-QCVQTFEGHESDINSVRFFP 239 (343)
T ss_pred ---------EEecCCcccEEEEecCCCCCCeEEecccc----------cceeeeeccCc-ceeEeecccccccceEEEcc
Confidence 22236778899999999 99999998887 68999999876 77889999999999999999
Q ss_pred CcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 282 LAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG-LHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 282 ~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+|. -+++|+.|++.++||++..+.+..+.. .-..+|++++||..|++|++|..|.++.|||.-
T Consensus 240 ~G~----------------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 240 SGD----------------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred CCC----------------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 994 467777778999999999988888764 123679999999999999999999999999987
Q ss_pred CCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-ee
Q 010051 361 NDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TA 404 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~ 404 (519)
.++. .-.+.+|. ..|+++..+|||..+++++-|..+ +|
T Consensus 304 k~e~--vg~L~GHe----NRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 304 KGER--VGVLAGHE----NRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ccce--EEEeeccC----CeeEEEEECCCCcEEEecchhHheeec
Confidence 7653 34455665 589999999999999999988776 44
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-36 Score=253.62 Aligned_cols=288 Identities=22% Similarity=0.334 Sum_probs=232.2
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC------
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG------ 77 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------ 77 (519)
+..+++..|++.|.-+.||++|+|||+++.|.+..||.+......+ ...++.+|..+|..+.|||||.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k------l~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK------LKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee------eeeeeecccCceEEEEECCCCCeEEecC
Confidence 3456778899999999999999999999999999999987665422 4556889999999999999974
Q ss_pred ---eEEEEEcccCCCcccceeeecc-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccc-ccCeEEEE
Q 010051 78 ---ELIIWKLHTTETGQAWKVLKNL-SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH-FHYVQGVA 152 (519)
Q Consensus 78 ---~i~vw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~ 152 (519)
.+.+||+.++. ....+ .++...+.+++|.|||..+++|+.|++|..||+ .|+.+..+.+- ...|.+++
T Consensus 289 ~~e~~~lwDv~tgd------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGD------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLA 361 (519)
T ss_pred chHheeeccCCcch------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEE
Confidence 46799999884 22222 235688999999999999999999999999998 45555555443 35699999
Q ss_pred EcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 153 WDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 153 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
..+||+++++.+.|..|++++......... .....+|++++.|.+|++
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--------------------------------ise~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGL--------------------------------ISEEQPITSFSISKDGKL 409 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhcc--------------------------------ccccCceeEEEEcCCCcE
Confidence 999999999999999999999876432111 122467889999999999
Q ss_pred EEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEE
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLY 312 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~ 312 (519)
+++.-.+ ..+++||+.+ ...+..+.||...-.-+.-+-.| .+. .++++|+.|+.|+
T Consensus 410 ~LvnL~~----------qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg-------~~~------~fiaSGSED~kvy 465 (519)
T KOG0293|consen 410 ALVNLQD----------QEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGG-------GND------KFIASGSEDSKVY 465 (519)
T ss_pred EEEEccc----------CeeEEeecch-hhHHHHhhcccccceEEEeccCC-------CCc------ceEEecCCCceEE
Confidence 9986555 7999999984 46667778887654444333222 111 6899999999999
Q ss_pred EEeCCCCCceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecC
Q 010051 313 IYDTESVPPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 313 vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~ 361 (519)
||+..+++++..+.+ |...|++++|+|.. .++|+++.||+|+||....
T Consensus 466 IWhr~sgkll~~LsG-Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSG-HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEccCCceeEeecC-CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999 99999999999976 5799999999999998753
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=256.16 Aligned_cols=362 Identities=15% Similarity=0.200 Sum_probs=266.7
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC-------
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG------- 76 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 76 (519)
....+...+...|++++.||+|.+|++....|...+-++.....++.+. ...+|.++.|||+|
T Consensus 46 ~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~----------fk~~v~~i~fSPng~~fav~~ 115 (893)
T KOG0291|consen 46 KSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN----------FKRGVGAIKFSPNGKFFAVGC 115 (893)
T ss_pred cceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe----------ecCccceEEECCCCcEEEEEe
Confidence 3456667788999999999999999999999999888887776655443 46789999999995
Q ss_pred -CeEEEEEcccCCC--cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--EEEecccccCeEEE
Q 010051 77 -GELIIWKLHTTET--GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV--LQILDAHFHYVQGV 151 (519)
Q Consensus 77 -~~i~vw~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~ 151 (519)
+.+.||....... -..+...+++.+|...|+++.|+.|.++|++|+.|..+++|.++..+. ...+.+|...|.+.
T Consensus 116 gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvac 195 (893)
T KOG0291|consen 116 GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVAC 195 (893)
T ss_pred cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEE
Confidence 6778898765433 445667778889999999999999999999999999999999987665 56779999999999
Q ss_pred EEcCCCCeEEEeeCCCeEEEEecCCCCccc----------------------ccccccee--eEEEe------------c
Q 010051 152 AWDPLSKYVASLSSDRTCRIYANRPTKSKG----------------------VEKMNYVC--QHVIT------------K 195 (519)
Q Consensus 152 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------~~~~~~~~--~~~~~------------~ 195 (519)
-|..+...+++.+.||.+.+|......... ..+..+.. ...+. .
T Consensus 196 fF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~ 275 (893)
T KOG0291|consen 196 FFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK 275 (893)
T ss_pred EeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence 999999999999999999999876211000 00000000 00000 0
Q ss_pred cCcccccCCccccceee--------ec-CCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccccc
Q 010051 196 AGQHSTDDSKSAKNHLF--------HD-ETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ 266 (519)
Q Consensus 196 ~~~~~~~~~~~~~~~~~--------~~-~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 266 (519)
....+..+-......++ +. .-....|..++|+..|.+|+.++..- +.+-+|+... ...+..
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl---------gQLlVweWqs-EsYVlK 345 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL---------GQLLVWEWQS-ESYVLK 345 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc---------ceEEEEEeec-cceeee
Confidence 00011111111111111 11 11236788899999999999988763 6888998864 345666
Q ss_pred CCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEE
Q 010051 267 LPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLA 346 (519)
Q Consensus 267 ~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 346 (519)
..+|...+++++++||| .++++|+.||.|+|||..++-++.+|.. |...|+.+.|+..|+.|+
T Consensus 346 QQgH~~~i~~l~YSpDg----------------q~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDG----------------QLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLL 408 (893)
T ss_pred ccccccceeeEEECCCC----------------cEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEE
Confidence 78999999999999999 5678888888999999999999999999 999999999999999999
Q ss_pred EEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee--eecCC
Q 010051 347 LSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV--TAETK 407 (519)
Q Consensus 347 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i--~~~~~ 407 (519)
+++.||+|+.||+.....-..++.+.. ....+++..|.|.++.+|+.|..- +|...
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~P~p-----~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EeecCCeEEeeeecccceeeeecCCCc-----eeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 999999999999987644333333222 244555555556655555544432 44443
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-35 Score=249.95 Aligned_cols=271 Identities=23% Similarity=0.410 Sum_probs=231.8
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEEEEE
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELIIWK 83 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~vw~ 83 (519)
...|++|+|+.+|.+||+|+.||.++||+..... ..++..|.++|.++.|+.. |+++.+||
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 4689999999999999999999999999987543 4457889999999999987 48889999
Q ss_pred cccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEe
Q 010051 84 LHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL 163 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 163 (519)
..++ ...+.+..|..+-..+.|-. ...+++++.|+.|+|+.+....++.++.+|.+.|.++.|.|.+.+|+++
T Consensus 305 ~~~g------~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 305 AHTG------TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ccCc------eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 9887 66677777888878889964 4568999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC---------eEE
Q 010051 164 SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS---------FLL 234 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~---------~l~ 234 (519)
+.|++++||....... ......|...|+.+.|+|.|. .++
T Consensus 378 SdD~TlkiWs~~~~~~-------------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNS-------------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred cCCCeeEeeecCCCcc-------------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 9999999998765431 112234567788999998764 455
Q ss_pred EecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEE
Q 010051 235 VPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIY 314 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vw 314 (519)
+++.+ +.+++||... ..++..+..|..+|++++|+|+| +++++|+.||.|.+|
T Consensus 427 sas~d----------stV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g----------------~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 427 SASFD----------STVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNG----------------RYLASGSLDGCVHIW 479 (524)
T ss_pred EeecC----------CeEEEEEccC-CceeEeeccCCCceEEEEecCCC----------------cEEEecCCCCeeEec
Confidence 55444 7999999965 47788899999999999999999 567777778899999
Q ss_pred eCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 315 DTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 315 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+.++++.++.+.+ .+.|..++|+.+|.+|..+-.||.+++.|+.
T Consensus 480 s~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 480 STKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999987 6779999999999999999999999999975
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.5e-34 Score=257.25 Aligned_cols=385 Identities=17% Similarity=0.201 Sum_probs=301.5
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc---------C
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP---------C 75 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~ 75 (519)
.+-.+.+|..+|+++.|+..|..||+|+.|+.|.|||+-....+. .+.+|...|+..-|.. .
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---------rL~GHkd~iT~~~F~~~~~~lvS~sK 169 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---------RLRGHKDSITQALFLNGDSFLVSVSK 169 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---------EeecchHHHhHHhccCCCeEEEEecc
Confidence 344567899999999999999999999999999999997665443 3677887777666655 3
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------------------
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK--------------------- 134 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------------- 134 (519)
|+.|++||+.+. .+..+.-.|...++.+++.+ +.+++++.|+.+.+|++..
T Consensus 170 Ds~iK~WdL~tq------hCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r 241 (888)
T KOG0306|consen 170 DSMIKFWDLETQ------HCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR 241 (888)
T ss_pred CceEEEEecccc------eeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence 799999999988 78888889999999999986 7899999999999998710
Q ss_pred ---CceEE------------------------------------------------------------------------
Q 010051 135 ---GSVLQ------------------------------------------------------------------------ 139 (519)
Q Consensus 135 ---~~~~~------------------------------------------------------------------------ 139 (519)
++.+.
T Consensus 242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ 321 (888)
T KOG0306|consen 242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA 321 (888)
T ss_pred ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence 00000
Q ss_pred ----------------------------------------------EecccccCeEEEEEcCCCCeEEEeeCCCeEEEEe
Q 010051 140 ----------------------------------------------ILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 140 ----------------------------------------------~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 173 (519)
.+.+|...|++++++.+...+++++ .+.|++|+
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn 400 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN 400 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence 0016777888899987766666654 67899999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeec---------CCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHD---------ETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
..+.+......-.+.....+.+.+..+..+...+...++.. ..|.+.|.+++.+||++.+++++.+
T Consensus 401 ~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD----- 475 (888)
T KOG0306|consen 401 RDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD----- 475 (888)
T ss_pred ccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC-----
Confidence 99888766665556666666666666666666665555543 3588999999999999999999988
Q ss_pred eecccceEEEEeccCCCc------ccccC-----CCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE
Q 010051 245 MSESINSAYIFSRKDLSR------PALQL-----PGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI 313 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~------~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v 313 (519)
..|++|+..-... .+..+ -.....|.|+.+|||| ++++.+--|++++|
T Consensus 476 -----ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg----------------k~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 476 -----KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG----------------KLLAVSLLDNTVKV 534 (888)
T ss_pred -----cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC----------------cEEEEEeccCeEEE
Confidence 6889998642111 11111 1234679999999999 56777778889999
Q ss_pred EeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEE
Q 010051 314 YDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMII 393 (519)
Q Consensus 314 wd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 393 (519)
|-+.+-+....+.+ |.-||.+|..|||+++++|||.|.+|+||-++-+...+.+. + +...|.++.|-|+...+
T Consensus 535 yflDtlKFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--A----HdDSvm~V~F~P~~~~F 607 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--A----HDDSVMSVQFLPKTHLF 607 (888)
T ss_pred EEecceeeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--c----ccCceeEEEEcccceeE
Confidence 99999999999999 99999999999999999999999999999999887655443 3 34688999999999999
Q ss_pred EeecCCcee-eecCCC---------CCccccc-cccCCCceEEeccccceeeeecccc
Q 010051 394 EASTNDKLV-TAETKE---------PDKRKTE-AETKDDETAINGSIAAESRLIEPER 440 (519)
Q Consensus 394 ~~~~~d~~i-~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (519)
.+++.|+.+ -|+... +...+|. +..+.+..+++++.|..+|+|+..+
T Consensus 608 Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999988 564332 2233443 3467777899999999999997776
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=270.85 Aligned_cols=284 Identities=27% Similarity=0.425 Sum_probs=236.9
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEE
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELI 80 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~ 80 (519)
.+|...|+++.|+|+|++|++++.++.+++|+....+. .....+.+|...|+.++|+|+ |.+|+
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------hhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 44589999999999999999999999999999966652 123345789999999999998 58999
Q ss_pred EEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeE
Q 010051 81 IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYV 160 (519)
Q Consensus 81 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 160 (519)
|||+.... ..++.+.+|...|++++|+|+|+++++|+.|++|++||+++++++..+.+|...|++++|++++++|
T Consensus 229 iwd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 229 IWDLKDDG-----RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred EeeccCCC-----eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence 99993321 6788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 161 ASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
++++.|+.|++||+.++... +... +....... .++++.|+|++.++++++.+
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~--------~~~~------------------~~~~~~~~-~~~~~~fsp~~~~ll~~~~d- 355 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKL--------CLKL------------------LSGAENSA-PVTSVQFSPNGKYLLSASLD- 355 (456)
T ss_pred EEcCCCccEEEEECCCCcee--------eeec------------------ccCCCCCC-ceeEEEECCCCcEEEEecCC-
Confidence 99999999999999987621 0000 01111122 68899999999999998887
Q ss_pred ceeeeecccceEEEEeccCCCcccccCCCCCCCe---EEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC
Q 010051 241 KISSMSESINSAYIFSRKDLSRPALQLPGASKPV---VAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE 317 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v---~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~ 317 (519)
+.+++|++... .....+.+|...+ ....+++.+ .++++|+.|+.|++||+.
T Consensus 356 ---------~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 356 ---------RTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLSTGG----------------KLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ---------CeEEEEEccCC-cceeeecccCCcceeEecccccCCC----------------CeEEEEeCCceEEEEeCC
Confidence 69999999754 4455566666643 222333333 779999999999999999
Q ss_pred CCCceEEEeccc-cccEEEEEEcCCCCEEEEEe--CCCcEEEEEec
Q 010051 318 SVPPIAILAGLH-YAAITDIAWSNNARYLALSS--QDGYCTLVEFE 360 (519)
Q Consensus 318 ~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~--~dg~i~vwd~~ 360 (519)
++..+..+.+ | ...+..+.|+|...++++++ .|+.+++|..+
T Consensus 410 s~~~~~~l~~-h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 410 SGGILQRLEG-HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccchhhhhcC-CCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999 8 88999999999999999998 78999999754
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.3e-36 Score=257.38 Aligned_cols=280 Identities=21% Similarity=0.291 Sum_probs=234.4
Q ss_pred eEEecCCCCCEEEEEEec-CCCEEEEEcCCCcEEEEEecC-CccccccccccccccccccCcceeEEEEccC--------
Q 010051 6 LQINWHDTKPVLTLDFHP-ISGLLATGGADYDIKIWLINS-GEKQKKIPTASYQNSLSYHGSAINILRFSPC-------- 75 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp-~~~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------- 75 (519)
+....+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.++ .++.+|..+|..++|+.+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l---------rtf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL---------RTFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee---------hhhhcchhhhhhhhccccCCeeeeee
Confidence 455679999999999999 888999999999999999876 5544 457789999999999988
Q ss_pred -CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 76 -GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 76 -~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
|+.|++||++++ +++..+. ....++|+.|.||+ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|
T Consensus 278 fD~~lKlwDtETG------~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 278 FDRFLKLWDTETG------QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred cceeeeeeccccc------eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 589999999999 6776665 45678999999998 78899999999999999999999999999999999999
Q ss_pred cCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeE
Q 010051 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFL 233 (519)
Q Consensus 154 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 233 (519)
-++++++++.+.|++++||+.+..-....... .......++..+|++.++
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~------------------------------~~~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIAD------------------------------PEMHTMPCLTLHPNGKWF 400 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcc------------------------------hhhccCcceecCCCCCee
Confidence 99999999999999999999987643221111 111234589999999999
Q ss_pred EEecCCcceeeeecccceEEEEeccCCC--cccccCCCCCC--CeEEEEEcCCcccccccCCCCcccccceEEEEEecCC
Q 010051 234 LVPAGSYKISSMSESINSAYIFSRKDLS--RPALQLPGASK--PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN 309 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~ 309 (519)
++-+-+ +.+.+|...... .....+.+|.. .-..+.||||| ++|++|..+|
T Consensus 401 ~aQs~d----------N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG----------------~~l~SGdsdG 454 (503)
T KOG0282|consen 401 AAQSMD----------NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG----------------RTLCSGDSDG 454 (503)
T ss_pred hhhccC----------ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC----------------CeEEeecCCc
Confidence 986665 677788765433 22345667754 45678999999 6688888888
Q ss_pred eEEEEeCCCCCceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 010051 310 SLYIYDTESVPPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVE 358 (519)
Q Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd 358 (519)
.+.+||.++-+.+..+.. |..++..+.|+|.. ..+|+++.||.|++|+
T Consensus 455 ~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 455 KVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cEEEeechhhhhhhcccc-CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999 99999999999975 5799999999999996
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-34 Score=257.79 Aligned_cols=362 Identities=17% Similarity=0.222 Sum_probs=273.3
Q ss_pred CeeEEecCCCCCEEEEEEecCCC--EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC-----
Q 010051 4 GTLQINWHDTKPVLTLDFHPISG--LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG----- 76 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 76 (519)
.....+.||.+.|.++.|+|+-+ +|++|..|+++++||+.+... ....+..|...|++++|++++
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--------cl~~~~~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--------CLHTMILHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--------HHHHHHhhhhheeeeeeccCCceEEE
Confidence 45567789999999999999876 588999999999999986654 234577799999999999882
Q ss_pred ----CeEEEEEc----------------------------------------------ccCCCc----------------
Q 010051 77 ----GELIIWKL----------------------------------------------HTTETG---------------- 90 (519)
Q Consensus 77 ----~~i~vw~~----------------------------------------------~~~~~~---------------- 90 (519)
..+.|||+ .++...
T Consensus 210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~ 289 (775)
T KOG0319|consen 210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA 289 (775)
T ss_pred eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence 33444443 322100
Q ss_pred ---------------------ccceeeeccccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCe
Q 010051 91 ---------------------QAWKVLKNLSFHRKDVLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYV 148 (519)
Q Consensus 91 ---------------------~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 148 (519)
...+..+.+.|..+.|..++|- |+.++||.++..+.+++|++.+..+. .+.+|...|
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~v 368 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAV 368 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhhe
Confidence 0122334455667778888874 56689999999999999998877765 789999999
Q ss_pred EEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccc------eeeEEEec-cCcccccCCccccceeee--------
Q 010051 149 QGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY------VCQHVITK-AGQHSTDDSKSAKNHLFH-------- 213 (519)
Q Consensus 149 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~-------- 213 (519)
.++....+|.+|++|+.|.++++|.+..+.......... .....+.. ........+.+....+|.
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 999966678899999999999999885443221110000 00000000 011111222222222222
Q ss_pred ----------cCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCc
Q 010051 214 ----------DETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLA 283 (519)
Q Consensus 214 ----------~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 283 (519)
...|...|++++++|+.+.+++++.+ ...+||++. .......+.+|...|.++.|+|..
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD----------ktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD----------KTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccc----------cceeeeccc-CceEEEEeeCCccceEEEEecccc
Confidence 23477889999999999999999888 699999998 446677899999999999999987
Q ss_pred ccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 284 FNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 284 ~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
..+++++.|.+|+||.+.+..++.+|.+ |...|..+.|-.+|..|++++.||-|++|++.+.+
T Consensus 518 ----------------q~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 518 ----------------QLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ----------------ceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 5688888899999999999999999999 99999999999999999999999999999999986
Q ss_pred ccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCC
Q 010051 364 LGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~ 408 (519)
.... +..| ...+++++.++....+++|+.|+.+ .|....
T Consensus 581 C~~t--lD~H----~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 581 CEMT--LDAH----NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhh--hhhc----cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 5443 4444 3689999999999999999988887 555443
No 30
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.8e-35 Score=276.01 Aligned_cols=333 Identities=33% Similarity=0.549 Sum_probs=262.2
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEc--CCCcEEEEEecCCc---cccccccccccccccccCcceeEEEEccCC-----
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGG--ADYDIKIWLINSGE---KQKKIPTASYQNSLSYHGSAINILRFSPCG----- 76 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~--~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 76 (519)
....|+...|.+++.+|||..+|||+ .|+.++||+...-- .......+....++..|.+.|+|+.|+++|
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34467788999999999999999999 89999999875321 111112344566788899999999999984
Q ss_pred ----CeEEEEEccc------------CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q 010051 77 ----GELIIWKLHT------------TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQI 140 (519)
Q Consensus 77 ----~~i~vw~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 140 (519)
+.|.||.... ......|+....+.+|...|..++|+|++.+|++++.|++|.+|+..+.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 6778999873 122346888999999999999999999999999999999999999999999999
Q ss_pred ecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcce
Q 010051 141 LDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSF 220 (519)
Q Consensus 141 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (519)
+.+|.+.|..+.|.|-|++|++-+.|++|++|++..-. ..+.+.. .+........
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~----------i~k~It~---------------pf~~~~~~T~ 221 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG----------IEKSITK---------------PFEESPLTTF 221 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcccce----------eeEeecc---------------chhhCCCcce
Confidence 99999999999999999999999999999999965532 1221111 1222234567
Q ss_pred eeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcc---cc
Q 010051 221 FRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFF---KL 297 (519)
Q Consensus 221 i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~---~~ 297 (519)
++.+.|||||.+|++...- ......+.|.+..+ ...-..+.+|..++.+++|+|.-..--- .+|.. ..
T Consensus 222 f~RlSWSPDG~~las~nA~------n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~--~ng~~~~~~~ 292 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAV------NGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNN--KNGTSTQPNC 292 (942)
T ss_pred eeecccCCCcCeecchhhc------cCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhcccc--ccCCccCCCc
Confidence 8899999999999987643 23336788888744 3556678899999999999994211000 01111 11
Q ss_pred cceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCC
Q 010051 298 PYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGN 373 (519)
Q Consensus 298 ~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 373 (519)
.+..+++|+.|++|-||.....+++..........|.+++|+|||..|+.+|.||+|.++.++..+++..+.....
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~ 368 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEI 368 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhh
Confidence 2347888999999999999988988887765678999999999999999999999999999999998887765443
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-33 Score=254.57 Aligned_cols=277 Identities=28% Similarity=0.409 Sum_probs=232.0
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCe
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGE 78 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~ 78 (519)
.+.+|.++|++++|+|++++|++++.+|.|++|++.+++.... +..|...+..+.|+++ ++.
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---------LKGHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---------EecCCcceeEEEECCCCCEEEEEcCCCe
Confidence 3458999999999999999999999999999999988764332 3446666667777665 689
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 158 (519)
|++|++... +....+..|...+.++.|++++.++++++.++.|.+||+.+++....+..|...|.++.|+|++.
T Consensus 75 i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 75 IRLWDLETG------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred EEEEEcCcc------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 999999875 45566667888999999999988888888899999999998998888888999999999999988
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
++++++.|+.|++||++..+.... ...+...+.++.|+|+++.+++++.
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~-------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVAT-------------------------------LTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEEcCCCcEEEEEcccccccee-------------------------------EecCccccceEEECCCcCEEEEecC
Confidence 888888899999999986542111 0123456889999999999988876
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
+ +.+++||.... .....+..|...+.++.|+|++ .++++++.++.|++|++.+
T Consensus 198 ~----------~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 198 D----------GTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDG----------------YLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred C----------CcEEEEECCCC-ceecchhhcCCceEEEEEcCCC----------------cEEEEEcCCCcEEEEEcCC
Confidence 5 68999999753 4455566788899999999986 4566666789999999999
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
++.+..+.. |...|.+++|++++++|++++.||.|++|+
T Consensus 251 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 GECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceeEEEccc-cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 998888887 889999999999999999999999999996
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=223.16 Aligned_cols=289 Identities=18% Similarity=0.177 Sum_probs=236.0
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEE
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWK 83 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~ 83 (519)
..+.++..|.++|.++.|+-||+|.++++.|.+|++|+...|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~------------------------------------- 50 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA------------------------------------- 50 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------------------------------------
Confidence 4667788999999999999999999999999999999987664
Q ss_pred cccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEe
Q 010051 84 LHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL 163 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 163 (519)
+++++.+|...|..++.+.|+..|++|+.|..|.+||+++|+..+.+.+|.+.|+.+.|+.+...+++|
T Consensus 51 -----------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 51 -----------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred -----------eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence 455566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCccee
Q 010051 164 SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIS 243 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 243 (519)
+.|.++++||-+.....++..+.. ....|.++.. .+..|++++.+
T Consensus 120 sfD~s~r~wDCRS~s~ePiQilde-----------------------------a~D~V~Si~v--~~heIvaGS~D---- 164 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSRSFEPIQILDE-----------------------------AKDGVSSIDV--AEHEIVAGSVD---- 164 (307)
T ss_pred cccceeEEEEcccCCCCccchhhh-----------------------------hcCceeEEEe--cccEEEeeccC----
Confidence 999999999999876544333321 1233445554 45678887777
Q ss_pred eeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE
Q 010051 244 SMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA 323 (519)
Q Consensus 244 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 323 (519)
++++.||++.+.. ... -...+|+++.|++++ ++.++++-|++|++.|-.+|+.+.
T Consensus 165 ------GtvRtydiR~G~l-~sD--y~g~pit~vs~s~d~----------------nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 165 ------GTVRTYDIRKGTL-SSD--YFGHPITSVSFSKDG----------------NCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ------CcEEEEEeeccee-ehh--hcCCcceeEEecCCC----------------CEEEEeeccceeeecccchhHHHH
Confidence 7999999986532 222 234689999999999 788999999999999999999999
Q ss_pred EEeccccccE--EEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCce
Q 010051 324 ILAGLHYAAI--TDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 324 ~~~~~~~~~i--~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
.+.+ |...- ..++++.....+++|+.||.|++||+........+.... ...+..+.+.|.-..+.++...+.
T Consensus 220 sYkG-hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-----~v~v~dl~~hp~~~~f~~A~~~~~ 293 (307)
T KOG0316|consen 220 SYKG-HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-----TVIVTDLSCHPTMDDFITATGHGD 293 (307)
T ss_pred Hhcc-cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-----ceeEEeeecccCccceeEecCCce
Confidence 9999 76543 456777778899999999999999998875443333222 234788999998888888887777
Q ss_pred eeecC
Q 010051 402 VTAET 406 (519)
Q Consensus 402 i~~~~ 406 (519)
..|..
T Consensus 294 ~~~~~ 298 (307)
T KOG0316|consen 294 LFWYQ 298 (307)
T ss_pred eceee
Confidence 66653
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-33 Score=284.74 Aligned_cols=295 Identities=18% Similarity=0.241 Sum_probs=229.2
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
.+|.+.|++++|+|+|++||+|+.|+.|+||++........ ..|
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----------~~~-------------------------- 523 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----------DIH-------------------------- 523 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----------ccc--------------------------
Confidence 35899999999999999999999999999999764211000 000
Q ss_pred cccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC-CCCeEEEeeCCC
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP-LSKYVASLSSDR 167 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg 167 (519)
.....+. +...+.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||
T Consensus 524 ----~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 524 ----YPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred ----cceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 0011111 345788999987 478999999999999999999999999999999999999996 788999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc-cCCCeEEEecCCcceeeee
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS-PDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~~~~~~~~~ 246 (519)
.|++||++++.... .+ .....+.++.|+ ++|.++++++.+
T Consensus 599 ~v~iWd~~~~~~~~----------~~----------------------~~~~~v~~v~~~~~~g~~latgs~d------- 639 (793)
T PLN00181 599 SVKLWSINQGVSIG----------TI----------------------KTKANICCVQFPSESGRSLAFGSAD------- 639 (793)
T ss_pred EEEEEECCCCcEEE----------EE----------------------ecCCCeEEEEEeCCCCCEEEEEeCC-------
Confidence 99999998754210 00 012357788885 579999998877
Q ss_pred cccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC------CC
Q 010051 247 ESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES------VP 320 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~------~~ 320 (519)
+.|++||++....+...+.+|...|.++.|. ++ .++++++.|+.|++||+.. ..
T Consensus 640 ---g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~----------------~~lvs~s~D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 640 ---HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS----------------STLVSSSTDNTLKLWDLSMSISGINET 699 (793)
T ss_pred ---CeEEEEECCCCCccceEecCCCCCEEEEEEe-CC----------------CEEEEEECCCEEEEEeCCCCccccCCc
Confidence 6999999987655666778999999999997 33 5688999999999999974 35
Q ss_pred ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCc-------ccccCCCCcccccCCccEE
Q 010051 321 PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNK-------VSKDENKSPLVTKSEDMII 393 (519)
Q Consensus 321 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l 393 (519)
++..+.+ |...++.++|+|++.+|++|+.|+.|++|+.........+...... ......|.+++|++++..|
T Consensus 700 ~l~~~~g-h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l 778 (793)
T PLN00181 700 PLHSFMG-HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL 778 (793)
T ss_pred ceEEEcC-CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence 6778888 9999999999999999999999999999997655322222111110 1123468999999999999
Q ss_pred EeecCCcee-eec
Q 010051 394 EASTNDKLV-TAE 405 (519)
Q Consensus 394 ~~~~~d~~i-~~~ 405 (519)
++++.++.| +|+
T Consensus 779 va~~~dG~I~i~~ 791 (793)
T PLN00181 779 VAANSTGNIKILE 791 (793)
T ss_pred EEecCCCcEEEEe
Confidence 999988877 554
No 34
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=100.00 E-value=6.3e-34 Score=239.89 Aligned_cols=356 Identities=49% Similarity=0.846 Sum_probs=290.8
Q ss_pred CCCCeeEEecCCCCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----
Q 010051 1 MKGGTLQINWHDTKPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---- 75 (519)
Q Consensus 1 ~~~~~~~~~~~h~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---- 75 (519)
|+...+++.+|...+|.++.|.+++. .||||+.|..|+||-++.+..-..-....+...|..|...|+.+.|+|+
T Consensus 1 m~~~~~ei~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelL 80 (434)
T KOG1009|consen 1 MEAYPIEISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELL 80 (434)
T ss_pred CCceeeEEEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCee
Confidence 67888999999999999999999887 9999999999999998876655432333466779999999999999997
Q ss_pred -----CCeEEEEEcccC----------CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q 010051 76 -----GGELIIWKLHTT----------ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQI 140 (519)
Q Consensus 76 -----~~~i~vw~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 140 (519)
+|.|.+|..... .....|.....+.+|...|..++|+|++.++++++.|..+++||+..|+....
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee
Confidence 589999987621 11344777888899999999999999999999999999999999999999999
Q ss_pred ecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcce
Q 010051 141 LDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSF 220 (519)
Q Consensus 141 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (519)
+..|...|..++|.|.++++++-+.|...+.+.+...+....... ..-. .............+++.......
T Consensus 161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~------~~m~--~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL------DIMP--AKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee------eEee--ecccCCCCcceeeeeecCchhhh
Confidence 999999999999999999999999998777776655432211111 0000 01111223334457888889999
Q ss_pred eeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCC-cccccc
Q 010051 221 FRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAG-FFKLPY 299 (519)
Q Consensus 221 i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g-~~~~~~ 299 (519)
...++|+|+|..+++.++..+...-. ..+..|+|+.....++...++....+...+.|+|--..|--..... .+.+++
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~-~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGV-FRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCce-eeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence 99999999999999877643322111 1467899999988999999999999999999999765554444433 678899
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCccc
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELG 365 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~ 365 (519)
+.+++....+.|+|||.++..++....+.|-..|++++|++||.+|+..+.||.+.+..++..+++
T Consensus 312 rlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 312 RLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 999999999999999999999999998889999999999999999999999999999999998877
No 35
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.9e-35 Score=239.01 Aligned_cols=287 Identities=22% Similarity=0.321 Sum_probs=239.6
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CC
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GG 77 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~ 77 (519)
.+.++....+-|..|||||+||++|+.||.|.|||.-+|+..+.+.-.. ...+.-+...|.|+.|+.| ||
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-qd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-QDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-hcceeecccceEEEeecccHHHhhccCcCC
Confidence 4567888899999999999999999999999999999999877664332 2335558899999999987 79
Q ss_pred eEEEEEcccCCCcccceeeeccc-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLS-FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL 156 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 156 (519)
.|++|.+.++ .+++.+. .|+..|+|+.||.|+..+++++.|.++++--+.+|+++..+++|++.|+...|.++
T Consensus 286 kIKvWri~tG------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 286 KIKVWRIETG------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred cEEEEEEecc------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 9999999999 7888887 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC-CCeEEE
Q 010051 157 SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD-GSFLLV 235 (519)
Q Consensus 157 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~ 235 (519)
|.++++++.||+|++|+..+.+....... ......|.++..-|. -..+++
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~-----------------------------~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKP-----------------------------LGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccC-----------------------------CCCcccceeEEEcCCCCceEEE
Confidence 99999999999999999988753222111 112344666766664 445666
Q ss_pred ecCCcceeeeecccceEEEEeccCCCcccccCC---CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEE
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPALQLP---GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLY 312 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~ 312 (519)
+... +.++|.++.. ..+..+. ...+...++..+|.| .++++.+.|+.++
T Consensus 411 CNrs----------ntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkG----------------ewiYcigED~vlY 462 (508)
T KOG0275|consen 411 CNRS----------NTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKG----------------EWIYCIGEDGVLY 462 (508)
T ss_pred EcCC----------CeEEEEeccc--eEEeeeccCCccCCceEEEEecCCC----------------cEEEEEccCcEEE
Confidence 5554 5788887752 3333332 233567788899988 7899999999999
Q ss_pred EEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 313 IYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 313 vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
.|...+|+...++.- |...+..++-+|..+.||+-+.||.+++|.
T Consensus 463 CF~~~sG~LE~tl~V-hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 463 CFSVLSGKLERTLPV-HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEeecCceeeeeec-ccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999988 999999999999999999999999999994
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-34 Score=255.71 Aligned_cols=289 Identities=18% Similarity=0.284 Sum_probs=247.7
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
..|+.+|.|+.|+|..++++++-.+|.|.|||.++...++.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks--------------------------------------- 50 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS--------------------------------------- 50 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---------------------------------------
Confidence 45899999999999999999999999999999987654332
Q ss_pred cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeE
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTC 169 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 169 (519)
+.-..-+|++..|-+-.+++++|+.|..|+||+.++++.+..+.+|...|++++.+|...+++++|.|-+|
T Consensus 51 ---------feV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 51 ---------FEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ---------eeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 22245678888888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc-CCCeEEEecCCcceeeeecc
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~~ 248 (519)
++||.+.. +.|.+.+ ..|...|.+++|+| |...+++++-+
T Consensus 122 KlW~we~~---------wa~~qtf---------------------eGH~HyVMqv~fnPkD~ntFaS~sLD--------- 162 (794)
T KOG0276|consen 122 KLWDWENE---------WACEQTF---------------------EGHEHYVMQVAFNPKDPNTFASASLD--------- 162 (794)
T ss_pred EEeeccCc---------eeeeeEE---------------------cCcceEEEEEEecCCCccceeeeecc---------
Confidence 99999764 2333332 35778899999999 56677777766
Q ss_pred cceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc
Q 010051 249 INSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL 328 (519)
Q Consensus 249 ~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 328 (519)
++|++|.+.. ..+..++.+|...|+++.|-+.|.. .++++|+.|..|+|||.++..++.++.+
T Consensus 163 -rTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdk--------------pylIsgaDD~tiKvWDyQtk~CV~TLeG- 225 (794)
T KOG0276|consen 163 -RTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDK--------------PYLISGADDLTIKVWDYQTKSCVQTLEG- 225 (794)
T ss_pred -ccEEEEEcCC-CCCceeeeccccCcceEEeccCCCc--------------ceEEecCCCceEEEeecchHHHHHHhhc-
Confidence 7999999964 4677889999999999999987733 6899999999999999999999999999
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCCC
Q 010051 329 HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 329 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
|...|..+.|+|.-.++++|+.||+++||+-.+-.+...+.. ..+.+++++..+.+..++.|.+++.+......
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~------gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgr 299 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY------GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGR 299 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc------CCceEEEEeecCCCCeEEEeccCCcEEEEccC
Confidence 999999999999999999999999999999876655444432 34678899999999999999999988666544
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=233.41 Aligned_cols=301 Identities=16% Similarity=0.170 Sum_probs=239.7
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccc-cccccccccccCcceeEEEEccCCCeEEE
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIP-TASYQNSLSYHGSAINILRFSPCGGELII 81 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~v 81 (519)
|..+-.+.+|++.|+|+.||.||.+||||+-+|.|+||...++.....+. ....+..+.+|+ .-..+.+..+||.|-+
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWM 174 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEE
Confidence 44566778999999999999999999999999999999999998776663 333455677787 5566777888999999
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccc-ccCeEEEEEcCCCCeE
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH-FHYVQGVAWDPLSKYV 160 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l 160 (519)
|.+.+. ...+.+.||..++++-.|.|+|++++++..||+|++|++.+++++..+.+- .....++.++..+..+
T Consensus 175 w~ip~~------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 175 WQIPSQ------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL 248 (399)
T ss_pred EECCCc------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence 999876 577888999999999999999999999999999999999999998887532 3456788899899999
Q ss_pred EEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 161 ASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
+.|+.++.+++-+..+++......... .............|.++.|+..=...|+++-+
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~--------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd- 307 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNGTV--------------------PELKPSQEELDESVESIPSSSKLPLAACGSVD- 307 (399)
T ss_pred EeccCCccEEEEccccceEEEecCCCC--------------------ccccccchhhhhhhhhcccccccchhhccccc-
Confidence 999999999998887776322211000 00000001111233344555555566665555
Q ss_pred ceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC
Q 010051 241 KISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP 320 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~ 320 (519)
++|.|||+... .++..-.|..+|..+.|-++ .++++++.+|.|+.||.++|+
T Consensus 308 ---------G~i~iyD~a~~--~~R~~c~he~~V~~l~w~~t-----------------~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 308 ---------GTIAIYDLAAS--TLRHICEHEDGVTKLKWLNT-----------------DYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred ---------ceEEEEecccc--hhheeccCCCceEEEEEcCc-----------------chheeeccCceEEeeeccccc
Confidence 79999999753 34455678889999999983 568889999999999999999
Q ss_pred ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 321 PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 321 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
++..+.+ |...|.+++++|++++++|+|.|++.+||++.
T Consensus 360 l~~~y~G-H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTG-HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEec-CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999 99999999999999999999999999999864
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-34 Score=261.11 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=211.8
Q ss_pred eeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-------------------------------ceEEEeccc
Q 010051 96 LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG-------------------------------SVLQILDAH 144 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------------------~~~~~~~~h 144 (519)
+.++..-...++|..|++|+.+||.|-.|..|++|.+... ....++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 3333334567999999999999999999999999988621 123457799
Q ss_pred ccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEE
Q 010051 145 FHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224 (519)
Q Consensus 145 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 224 (519)
.++|....|+|+.++|+++++|+++|+|.+.+.. .+.....|..+|..+
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------------------------------~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------------------------------CLVIYKGHLAPVWDV 499 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccce-------------------------------eEEEecCCCcceeeE
Confidence 9999999999999999999999999999998853 123334677889999
Q ss_pred EEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEE
Q 010051 225 AWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA 304 (519)
Q Consensus 225 ~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~ 304 (519)
.|+|.|-|+|+++.+ ...++|.... ..+.+.+.+|.+.|.|+.|+|+. +++++
T Consensus 500 ~F~P~GyYFatas~D----------~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs----------------~Y~aT 552 (707)
T KOG0263|consen 500 QFAPRGYYFATASHD----------QTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNS----------------NYVAT 552 (707)
T ss_pred EecCCceEEEecCCC----------ceeeeeeccc-CCchhhhcccccccceEEECCcc----------------ccccc
Confidence 999999999999887 6889999865 57888899999999999999998 56777
Q ss_pred EecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcc
Q 010051 305 IATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPL 384 (519)
Q Consensus 305 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (519)
|+.|.++++||+.+|..++.|.+ |.++|++++|||+|++|++|+.||.|.+||+.++.+.. .+.+| .+.+.++
T Consensus 553 GSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--~l~~H----t~ti~Sl 625 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--QLKGH----TGTIYSL 625 (707)
T ss_pred CCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--hhhcc----cCceeEE
Confidence 77788999999999999999999 99999999999999999999999999999999986443 34455 3789999
Q ss_pred cccCCccEEEeecCCcee-eecCCC
Q 010051 385 VTKSEDMIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 385 ~~s~~~~~l~~~~~d~~i-~~~~~~ 408 (519)
.||.||..|++++.|..| +|+...
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999888 775443
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=233.50 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=242.9
Q ss_pred ccccccccCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 010051 56 YQNSLSYHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNS 126 (519)
Q Consensus 56 ~~~~~~~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 126 (519)
....+.+|.+.|.++++.|. |+++.|||+.++ +...++.||-..|..+++|+-..||++++.|+.
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC------eEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 34457899999999999886 699999999998 788999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCcc
Q 010051 127 CIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKS 206 (519)
Q Consensus 127 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (519)
|+.||++..+.++.+.+|-+.|.++..+|.-..|++|+.|.++++||+++..
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~---------------------------- 268 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA---------------------------- 268 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----------------------------
Confidence 9999999999999999999999999999999999999999999999999864
Q ss_pred ccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccc
Q 010051 207 AKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNL 286 (519)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 286 (519)
.+.....|...|.++.+.|-...+++++.+ ..|++||++.+ +.+..+..|...|.+++.+|....+
T Consensus 269 ---~V~~l~GH~~~V~~V~~~~~dpqvit~S~D----------~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 269 ---SVHVLSGHTNPVASVMCQPTDPQVITGSHD----------STVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred ---eEEEecCCCCcceeEEeecCCCceEEecCC----------ceEEEeeeccC-ceeEeeecccceeeEEecCCchhhh
Confidence 233444677889999999988889998877 79999999764 5677888999999999999998666
Q ss_pred cccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccc
Q 010051 287 RESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGI 366 (519)
Q Consensus 287 ~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~ 366 (519)
|+++.| .|+-|++..+..+..+.+ |...|++++...|| ++++|+..|.+.+||..++..-+
T Consensus 335 ASas~d-----------------nik~w~~p~g~f~~nlsg-h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 335 ASASPD-----------------NIKQWKLPEGEFLQNLSG-HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred hccCCc-----------------cceeccCCccchhhcccc-ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccc
Confidence 655554 499999999999999888 99999999998887 78899999999999999874322
Q ss_pred e---eeecCCcccccCCCCcccccCCccEEEeecCCcee-eecC
Q 010051 367 P---ISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAET 406 (519)
Q Consensus 367 ~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~ 406 (519)
. ...+|.- ..+..|.+.+|...|.+|+++..|+.| +|+.
T Consensus 396 ~~~t~vqpGSl-~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 396 RGQTIVQPGSL-ESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cccccccCCcc-ccccceeEEeecccCceEEeccCCcceEEEec
Confidence 2 2333322 245688899999999999999999888 4443
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=243.53 Aligned_cols=271 Identities=20% Similarity=0.354 Sum_probs=226.0
Q ss_pred cCcceeEEEEccCC---------CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 010051 63 HGSAINILRFSPCG---------GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN 133 (519)
Q Consensus 63 ~~~~v~~~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 133 (519)
....|+.|.|.|+| |.+.+|+...- .....++.|...|+++.|+++|.++++|+.+|.|++|+.+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 45678999999996 66778987432 3344567899999999999999999999999999999985
Q ss_pred CCceEEEecc-cccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceee
Q 010051 134 KGSVLQILDA-HFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF 212 (519)
Q Consensus 134 ~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (519)
-.. ++.+.+ |...|++++|+|+...|++++.||+|+|||....+.....
T Consensus 169 mnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL----------------------------- 218 (464)
T KOG0284|consen 169 MNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL----------------------------- 218 (464)
T ss_pred hhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-----------------------------
Confidence 554 444544 4589999999999999999999999999999876532211
Q ss_pred ecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCC
Q 010051 213 HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSA 292 (519)
Q Consensus 213 ~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 292 (519)
..|.-.|.++.|+|.-..+++++.+ +.|++||.+. +.++..+.+|...|..+.|+|++
T Consensus 219 --~GHgwdVksvdWHP~kgLiasgskD----------nlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~--------- 276 (464)
T KOG0284|consen 219 --RGHGWDVKSVDWHPTKGLIASGSKD----------NLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG--------- 276 (464)
T ss_pred --ccCCCCcceeccCCccceeEEccCC----------ceeEeecCCC-cchhhhhhhccceEEEEEEcCCC---------
Confidence 2456778999999999999998877 6999999975 47788999999999999999998
Q ss_pred CcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecCCcccceeeec
Q 010051 293 GFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 293 g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
++|++++.|..+++||+++.+.+..+++ |...|+++.|+|-. .+|.+|+.||.|..|.+... .++.
T Consensus 277 -------N~Llt~skD~~~kv~DiR~mkEl~~~r~-Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~---~p~~-- 343 (464)
T KOG0284|consen 277 -------NWLLTGSKDQSCKVFDIRTMKELFTYRG-HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE---EPLG-- 343 (464)
T ss_pred -------CeeEEccCCceEEEEehhHhHHHHHhhc-chhhheeeccccccccceeeccCCCceEEEecccc---cccc--
Confidence 6788888888999999999999999999 99999999999964 68889999999999998732 2222
Q ss_pred CCcccccCCCCcccccCCccEEEeecCCceeee
Q 010051 372 GNKVSKDENKSPLVTKSEDMIIEASTNDKLVTA 404 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 404 (519)
.....+...|++++|+|=|..|++|+.|..+..
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred CCCcccccceeeeeccccceeEeecCCCcceee
Confidence 222235689999999999999999999988833
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=226.48 Aligned_cols=280 Identities=20% Similarity=0.271 Sum_probs=234.1
Q ss_pred eEEecCCCCCEEEEEEec---CCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------
Q 010051 6 LQINWHDTKPVLTLDFHP---ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp---~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 75 (519)
.....+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.- +.++.+|.+.|....+..+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw---------igtfeghkgavw~~~l~~na~~aasa 77 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW---------IGTFEGHKGAVWSATLNKNATRAASA 77 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc---------EEeeeccCcceeeeecCchhhhhhhh
Confidence 456679999999999985 777999999999888887777774 4457889999988887665
Q ss_pred --CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eEEEecccccCeEEEE
Q 010051 76 --GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS-VLQILDAHFHYVQGVA 152 (519)
Q Consensus 76 --~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~ 152 (519)
|-+-+|||.-++ ..+..+. |..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.
T Consensus 78 aadftakvw~a~tg------delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~ 150 (334)
T KOG0278|consen 78 AADFTAKVWDAVTG------DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL 150 (334)
T ss_pred cccchhhhhhhhhh------hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence 566789999887 4555555 88889999999999999999999999999998754 4667899999999999
Q ss_pred EcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 153 WDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 153 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
|....+.|++.+.|++||+||.+++.... .......|+++.++++|++
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~--------------------------------sL~~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTGTEVQ--------------------------------SLEFNSPVTSLEVSQDGRI 198 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccCcEEE--------------------------------EEecCCCCcceeeccCCCE
Confidence 99988999999999999999999986322 1234577889999999999
Q ss_pred EEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEE
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLY 312 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~ 312 (519)
|.++.+. .|.+||...... +..+ .-...|.+..++|+. ..+++|+.|..++
T Consensus 199 lTia~gs-----------sV~Fwdaksf~~-lKs~-k~P~nV~SASL~P~k----------------~~fVaGged~~~~ 249 (334)
T KOG0278|consen 199 LTIAYGS-----------SVKFWDAKSFGL-LKSY-KMPCNVESASLHPKK----------------EFFVAGGEDFKVY 249 (334)
T ss_pred EEEecCc-----------eeEEeccccccc-eeec-cCccccccccccCCC----------------ceEEecCcceEEE
Confidence 9988774 899999876542 2222 223468888999986 5688899999999
Q ss_pred EEeCCCCCceEEE-eccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 313 IYDTESVPPIAIL-AGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 313 vwd~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
.||..+++.+..+ .+ |.++|.|+.|+|+|...++|+.||+|++|....++
T Consensus 250 kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCCceeeecccC-CCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999998886 66 99999999999999999999999999999987653
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.4e-33 Score=219.24 Aligned_cols=279 Identities=16% Similarity=0.261 Sum_probs=232.3
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE 88 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~ 88 (519)
+.+|.+.|.+++|+.+|..||+|+.|+++.||++.......
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~--------------------------------------- 56 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK--------------------------------------- 56 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh---------------------------------------
Confidence 46788999999999999999999999999999998664221
Q ss_pred CcccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
-....+|.+.|-.++|+| ....|++++.|.+|++||++++++...+...... ..+.|+|+|++++.++.|.
T Consensus 57 -------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD 128 (313)
T KOG1407|consen 57 -------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDD 128 (313)
T ss_pred -------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcc
Confidence 122345888888999988 4578999999999999999999999888765444 4688999999999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeec
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~ 247 (519)
.|.+.|.++.+.. ...+....+..++|+-++..++...+.
T Consensus 129 ~it~id~r~~~~~--------------------------------~~~~~~~e~ne~~w~~~nd~Fflt~Gl-------- 168 (313)
T KOG1407|consen 129 RITFIDARTYKIV--------------------------------NEEQFKFEVNEISWNNSNDLFFLTNGL-------- 168 (313)
T ss_pred cEEEEEeccccee--------------------------------ehhcccceeeeeeecCCCCEEEEecCC--------
Confidence 9999999886532 222334557789999888888887776
Q ss_pred ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 248 SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
|.|.|..... -+++..+..|.....||.|+|+|+ ++++|+.|-.+.+||+...-+++.+..
T Consensus 169 --G~v~ILsyps-Lkpv~si~AH~snCicI~f~p~Gr----------------yfA~GsADAlvSLWD~~ELiC~R~isR 229 (313)
T KOG1407|consen 169 --GCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGR----------------YFATGSADALVSLWDVDELICERCISR 229 (313)
T ss_pred --ceEEEEeccc-cccccccccCCcceEEEEECCCCc----------------eEeeccccceeeccChhHhhhheeecc
Confidence 5788887763 477888999999999999999994 566666667999999999999999998
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCce
Q 010051 328 LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
+.-+|..+.||.||++||+|+.|..|-|=+++++.....+.. .+....++|+|...+||.+.+|+.
T Consensus 230 -ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~-------~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 230 -LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC-------EGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred -ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec-------cCCceeEEecCCCceeeEEecCCC
Confidence 999999999999999999999999999999998865444432 456789999999999999988754
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=253.39 Aligned_cols=306 Identities=18% Similarity=0.219 Sum_probs=248.8
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEE
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELI 80 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~ 80 (519)
...+.+|..++|+|..++++++--.|.|++||..-+.++.+ +..|.++|+.+.|.|. |-.|+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---------FdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---------FDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---------hhccCCccceeeecCCCCeEEecCCccEEE
Confidence 34578899999999999999999999999999998876554 5669999999999986 57899
Q ss_pred EEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeE
Q 010051 81 IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYV 160 (519)
Q Consensus 81 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 160 (519)
||+..+. +++.++.||-+-|+.+.|++.-.+++++|.|.+|+||+..+++++..+.+|...|.|..|+|....+
T Consensus 77 VWnYk~r------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 77 VWNYKTR------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred EEecccc------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 9999887 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 161 ASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
+++|-|.+||+||+...+.....................++. ......-.-...|...|+-++|+|.-..+++++.+
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg--~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD- 227 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFG--QTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD- 227 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcC--CcCeeeeeeecccccccceEEecCCcceEEecCCc-
Confidence 999999999999998765443322211000000000000000 00111112345678889999999999999998877
Q ss_pred ceeeeecccceEEEEeccCCC-cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 241 KISSMSESINSAYIFSRKDLS-RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
..|++|.+.... -.+.+..+|...|.++.|+|.. +.+++.+.|++|+|||+...
T Consensus 228 ---------RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q----------------~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 228 ---------RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ----------------DLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ---------ceeeEEEeccccceeehhhhcccCCcceEEecCcc----------------ceeEecCCCccEEEEecccc
Confidence 689999887543 2456678999999999999976 67899999999999999999
Q ss_pred CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 320 PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+.+.+++. .....+.++-+|..++++.| .|+-+.||.++
T Consensus 283 t~v~tfrr-endRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 283 TSVQTFRR-ENDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred cceeeeec-cCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 99999987 66788999999999888766 46667777776
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=259.38 Aligned_cols=289 Identities=19% Similarity=0.305 Sum_probs=210.1
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCcccccccccccc---ccccccCcceeEEEEc-------------
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQ---NSLSYHGSAINILRFS------------- 73 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~------------- 73 (519)
..|.++|.++.||+||+|||+|+.|+.|+||.+...+... ....... ..+.. ...+..+..+
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~~~~~~~~~~~-~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGDSSCMYFEYNA-NSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccccchhhhhhhh-ccccCcccccccccccccccccc
Confidence 3799999999999999999999999999999987633211 1000000 00000 0000000000
Q ss_pred -cCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEE
Q 010051 74 -PCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVA 152 (519)
Q Consensus 74 -~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 152 (519)
.....+ +.+.... .-.-+++..+.||.+.|..|.||.+ ++|++++.|.+|++|++....++..|. |...|+|++
T Consensus 342 ~~~s~~~-~~p~~~f--~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 342 GSQSPCV-LLPLKAF--VFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccCCccc-cCCCccc--cccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 001111 1111111 1111567888999999999999975 589999999999999999999998875 899999999
Q ss_pred EcC-CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 153 WDP-LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 153 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
|+| |.+||++|+-||.||||++...+ +.........|++++|.|||+
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~--------------------------------Vv~W~Dl~~lITAvcy~PdGk 464 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK--------------------------------VVDWNDLRDLITAVCYSPDGK 464 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe--------------------------------eEeehhhhhhheeEEeccCCc
Confidence 999 78899999999999999997654 222334457799999999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCccccc--------CCCCCCCeEEEEEcCCcccccccCCCCcccccceEEE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ--------LPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIF 303 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~ 303 (519)
+.++|+-. |.+++|+.......... -..| ..|+.+.|.|... ..++
T Consensus 465 ~avIGt~~----------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~-~rITG~Q~~p~~~---------------~~vL 518 (712)
T KOG0283|consen 465 GAVIGTFN----------GYCRFYDTEGLKLVSDFHIRLHNKKKKQG-KRITGLQFFPGDP---------------DEVL 518 (712)
T ss_pred eEEEEEec----------cEEEEEEccCCeEEEeeeEeeccCccccC-ceeeeeEecCCCC---------------CeEE
Confidence 99998877 68888887654321110 1112 2799999998642 3588
Q ss_pred EEecCCeEEEEeCCCCCceEEEeccccc-cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 304 AIATLNSLYIYDTESVPPIAILAGLHYA-AITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 304 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
..+.|..|+|||.+...++..|++.+.. .-....|+.||++|++++.|..|+||++....
T Consensus 519 VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 519 VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 8899999999999988999999884443 34667899999999999999999999986543
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=219.06 Aligned_cols=244 Identities=21% Similarity=0.375 Sum_probs=199.7
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
.+|+..|++++|+|.|++||+|+.|.++.||.-..++
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e------------------------------------------- 94 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE------------------------------------------- 94 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc-------------------------------------------
Confidence 5799999999999999999999999999999654333
Q ss_pred cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---ceEEEecccccCeEEEEEcCCCCeEEEeeCC
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG---SVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 166 (519)
++++..+.||...|.|++|+++|++||++++|..|.||.+..+ .+...++.|...|..+.|+|...+|++++.|
T Consensus 95 ---fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 95 ---FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred ---eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC
Confidence 2678888999999999999999999999999999999999754 4677889999999999999999999999999
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~ 246 (519)
.+|++|+-.... .+.|...+ ..+...|.+++|++.|..|++++.+
T Consensus 172 nTIk~~~~~~dd-------dW~c~~tl---------------------~g~~~TVW~~~F~~~G~rl~s~sdD------- 216 (312)
T KOG0645|consen 172 NTIKVYRDEDDD-------DWECVQTL---------------------DGHENTVWSLAFDNIGSRLVSCSDD------- 216 (312)
T ss_pred CeEEEEeecCCC-------CeeEEEEe---------------------cCccceEEEEEecCCCceEEEecCC-------
Confidence 999999866321 12232222 3455678999999999999998887
Q ss_pred cccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC------C
Q 010051 247 ESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV------P 320 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~------~ 320 (519)
+.++||..... ....|...++.+.|. + ..|++++.|+.|++|.-... +
T Consensus 217 ---~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~-----------------~~IaS~ggD~~i~lf~~s~~~d~p~~~ 270 (312)
T KOG0645|consen 217 ---GTVSIWRLYTD-----LSGMHSRALYDVPWD-N-----------------GVIASGGGDDAIRLFKESDSPDEPSWN 270 (312)
T ss_pred ---cceEeeeeccC-----cchhcccceEeeeec-c-----------------cceEeccCCCEEEEEEecCCCCCchHH
Confidence 68899975421 123466789999998 3 36899999999999976542 2
Q ss_pred ceEEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEec
Q 010051 321 PIAILAGLHYAAITDIAWSNN-ARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 321 ~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vwd~~ 360 (519)
.+....+.|...|+++.|+|. ..+|++++.||.|++|.+.
T Consensus 271 l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 271 LLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 233333448899999999995 6789999999999999874
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-32 Score=220.49 Aligned_cols=290 Identities=18% Similarity=0.257 Sum_probs=228.8
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--CCeEEEEEcc
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--GGELIIWKLH 85 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~i~vw~~~ 85 (519)
.+..-.+.|+++.|+++|.+|++++.|.+|+|||..+++..+.+....+...+.......+++..++. |.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 33445788999999999999999999999999999999999988776665555544555556666665 7899999999
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
+. +.++.+.||...|+.|+.+|-+..+++++.|++|++||++..++...+.....+ .++|.|.|-++|++..
T Consensus 89 dN------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 89 DN------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred cC------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 88 899999999999999999999999999999999999999988887766544343 4789999999999988
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
...|++||++............. .......+.+.|||||++|+.++..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~--------------------------~~~~~ew~~l~FS~dGK~iLlsT~~------ 208 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSIT--------------------------DNDEAEWTDLEFSPDGKSILLSTNA------ 208 (311)
T ss_pred CCeEEEEEecccCCCCceeEccC--------------------------CCCccceeeeEEcCCCCEEEEEeCC------
Confidence 88999999998643222111110 0223557789999999999998877
Q ss_pred ecccceEEEEeccCCCcccccCCCCCC---CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCce
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGASK---PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI 322 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 322 (519)
+.+++.|.-++. ....+..+.. --....|+||+ +++++|+.||+|++|+++++..+
T Consensus 209 ----s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ftPds----------------~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 209 ----SFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFTPDS----------------KFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ----CcEEEEEccCCc-EeeeEeeccCCCCcceeEEECCCC----------------cEEEEecCCCcEEEEEcCCCcEe
Confidence 567777765443 2333333322 22578899998 77899999999999999999999
Q ss_pred EEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 323 AILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
..+.+.+.+++.++.|+|.-.+++++ +..+.+|=..
T Consensus 268 ~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 268 AVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred eEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 99998778999999999987777765 4678888554
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-32 Score=247.04 Aligned_cols=337 Identities=17% Similarity=0.224 Sum_probs=266.8
Q ss_pred CCCEEEEEEecCCC---EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------CCeEEE
Q 010051 13 TKPVLTLDFHPISG---LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------GGELII 81 (519)
Q Consensus 13 ~~~V~~~~~sp~~~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~i~v 81 (519)
+..+.+++|-|.++ .|+. -.+.++.+|.++.......-+.......+.+|...|..++++.+ ++.|+|
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Siki 398 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKI 398 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEE
Confidence 45688889888764 3333 55778999988762211111111112346789999999999987 589999
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
|+..+. ++++++.. ..+.+..|.|.++++++|...|.+.+||+.+...+..+++|.+.|+.++.+||+..++
T Consensus 399 Wn~~t~------kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 399 WNRDTL------KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred EEccCc------ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 999887 78887764 3789999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
++|.|.+|++||..--....-. ....+ ....-....+...|.++.+||||++|+++--+
T Consensus 471 T~saDktVkfWdf~l~~~~~gt-----~~k~l--------------sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd-- 529 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGT-----QKKVL--------------SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD-- 529 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcc-----cceee--------------eeccceEEeccccEEEEEEcCCCcEEEEEecc--
Confidence 9999999999997532210000 00000 00011122456778999999999999997766
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
+++++|-+.+. +....+.||.-||.++..+||+ ..+++|+.|..|++|-++-|.+
T Consensus 530 --------nTVkVyflDtl-KFflsLYGHkLPV~smDIS~DS----------------klivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 530 --------NTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDS----------------KLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred --------CeEEEEEecce-eeeeeecccccceeEEeccCCc----------------CeEEeccCCCceEEeccccchh
Confidence 68899988654 5567788999999999999998 6788999999999999999999
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCce
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
-..+.+ |...|.++.|-|...++++++.|+.|+-||-..-+ ....+.+|. ..+++++.+|+|.++++++.|..
T Consensus 585 HKS~fA-HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe--~iq~L~~H~----~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 585 HKSFFA-HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE--EIQKLDGHH----SEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred hhhhhc-ccCceeEEEEcccceeEEEecCcceEEeechhhhh--hheeeccch----heeeeeEEcCCCCeEEeccCCce
Confidence 999999 99999999999999999999999999999976543 445555665 68999999999999999999887
Q ss_pred e-eecCCCCCc
Q 010051 402 V-TAETKEPDK 411 (519)
Q Consensus 402 i-~~~~~~~~~ 411 (519)
+ .|+..++..
T Consensus 658 IRlwE~tde~~ 668 (888)
T KOG0306|consen 658 IRLWERTDEIL 668 (888)
T ss_pred eEeeeccCcce
Confidence 7 666555443
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.6e-34 Score=234.93 Aligned_cols=280 Identities=20% Similarity=0.311 Sum_probs=218.3
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
..+.|+|+.+. ...+++|..|.+|+|||..+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~---------------------------------------------- 227 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL---------------------------------------------- 227 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH----------------------------------------------
Confidence 35678888875 557888888888888887654
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
.++..+.||++.|.|+.|. .+.|++|+.|.+|++||+++|+++.++-+|...|..+.|+ ..++++++.|.++.+
T Consensus 228 --~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 228 --ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAV 301 (499)
T ss_pred --HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEE
Confidence 3566777899999999986 6699999999999999999999999999999999999998 579999999999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
||+......... .-...|...|+.+.|+ .+++++++++ .+
T Consensus 302 Wdm~sps~it~r----------------------------rVLvGHrAaVNvVdfd--~kyIVsASgD----------RT 341 (499)
T KOG0281|consen 302 WDMASPTDITLR----------------------------RVLVGHRAAVNVVDFD--DKYIVSASGD----------RT 341 (499)
T ss_pred EeccCchHHHHH----------------------------HHHhhhhhheeeeccc--cceEEEecCC----------ce
Confidence 999875411110 0112455667788885 4699998888 79
Q ss_pred EEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc
Q 010051 252 AYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA 331 (519)
Q Consensus 252 i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 331 (519)
+++|++.+ ...+.++.+|...|.|+.+.- +++++|+.|++|++||+..|.+++.+.+ |..
T Consensus 342 ikvW~~st-~efvRtl~gHkRGIAClQYr~------------------rlvVSGSSDntIRlwdi~~G~cLRvLeG-HEe 401 (499)
T KOG0281|consen 342 IKVWSTST-CEFVRTLNGHKRGIACLQYRD------------------RLVVSGSSDNTIRLWDIECGACLRVLEG-HEE 401 (499)
T ss_pred EEEEeccc-eeeehhhhcccccceehhccC------------------eEEEecCCCceEEEEeccccHHHHHHhc-hHH
Confidence 99999965 467888999999999988754 7899999999999999999999999999 999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccce----eeecCCcccccCCCCcccccCCccEEEeec-CCceeeecC
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFENDELGIP----ISLSGNKVSKDENKSPLVTKSEDMIIEAST-NDKLVTAET 406 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~i~~~~ 406 (519)
-|.++.| |.+.+++|+.||+|+|||+..+.-... +.+. +...+.+.|..+.|. ...+++++ ++..++|+.
T Consensus 402 LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~-~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR-TLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHH-hhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 9999999 667999999999999999987632210 0000 111233566666663 34444444 555568887
Q ss_pred CCCC
Q 010051 407 KEPD 410 (519)
Q Consensus 407 ~~~~ 410 (519)
.+..
T Consensus 477 l~~~ 480 (499)
T KOG0281|consen 477 LNGP 480 (499)
T ss_pred CCCC
Confidence 6654
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.1e-32 Score=226.91 Aligned_cols=279 Identities=20% Similarity=0.279 Sum_probs=229.6
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc------------C
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP------------C 75 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~ 75 (519)
..+-|.+.|.++... ++++++|++||.++|||... +.. ..+.+|.+.+.+++|.. .
T Consensus 100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~---------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI---------KTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred ccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE---------EEEecCCcceeeeEEEecCCccceEEEecC
Confidence 345688889988888 78999999999999999874 432 33678999988777643 2
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------------------
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK--------------------- 134 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------------- 134 (519)
|.++++|.++.+... .+.+....||...|-++...++|..+++|+.|.+|.+|+..+
T Consensus 168 Dqtl~Lw~~~~~~~~--~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENK--VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred CceEEEEEecCchhh--hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 689999998876432 234455569999999999999999999999999999999321
Q ss_pred ----CceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccce
Q 010051 135 ----GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNH 210 (519)
Q Consensus 135 ----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (519)
+.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++......
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--------------------------- 297 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--------------------------- 297 (423)
T ss_pred cccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---------------------------
Confidence 234567889999999999997 678999999999999999987632211
Q ss_pred eeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc--ccccCCCCCCCeEEEEEcCCcccccc
Q 010051 211 LFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR--PALQLPGASKPVVAVRFCPLAFNLRE 288 (519)
Q Consensus 211 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~ 288 (519)
.....+.++.++|..++|++++.+ ..+++||.+.... ....+.+|...|.++.|+|...+
T Consensus 298 -----~~~ksl~~i~~~~~~~Ll~~gssd----------r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~--- 359 (423)
T KOG0313|consen 298 -----TTNKSLNCISYSPLSKLLASGSSD----------RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF--- 359 (423)
T ss_pred -----ecCcceeEeecccccceeeecCCC----------CceeecCCCCCCCceeEEeeecchhhhhheecCCCCce---
Confidence 223557799999999999998887 6999999987654 34568899999999999998754
Q ss_pred cCCCCcccccceEEEEEecCCeEEEEeCCCCC-ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 289 SNSAGFFKLPYRLIFAIATLNSLYIYDTESVP-PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 289 ~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.+++++.|+++++||+++.+ +++.+.+ |...|.++.|+ ++.+|++|+.|.+|+|+.-.
T Consensus 360 ------------~~~S~S~D~t~klWDvRS~k~plydI~~-h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 360 ------------QLVSGSYDNTVKLWDVRSTKAPLYDIAG-HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------------EEEEEecCCeEEEEEeccCCCcceeecc-CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 48999999999999999887 9999999 99999999996 56699999999999998643
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=226.33 Aligned_cols=260 Identities=21% Similarity=0.281 Sum_probs=215.3
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEE
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWK 83 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~ 83 (519)
...+-+.||++.|..++|+..|++||+++.|=.+++||.++..
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------- 183 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF------------------------------------- 183 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-------------------------------------
Confidence 3445567899999999999999999999999889999876431
Q ss_pred cccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEe
Q 010051 84 LHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL 163 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 163 (519)
++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..++.+.||..++++
T Consensus 184 ----------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 184 ----------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred ----------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 4566677799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEE----EecC-
Q 010051 164 SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLL----VPAG- 238 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~----~~~~- 238 (519)
+.|.+|++|-+.+.+..... ..|..+|.+++|-|...+-- .++.
T Consensus 254 s~dqtl~vW~~~t~~~k~~l-------------------------------R~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAEL-------------------------------REHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred CCCceEEEEEeccchhhhhh-------------------------------hccccceEEEEecccccCcchhhccCCCC
Confidence 99999999998887432211 13345566666665432111 1100
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
.+.+......++.|++||+... .++.++.+|...|..++|+|.| ++|+++..|+++++||+++
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~G----------------kyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGG----------------KYILSCADDKTLRVWDLKN 365 (406)
T ss_pred CccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCC----------------eEEEEEecCCcEEEEEecc
Confidence 1112222334489999999754 7888999999999999999999 6789999999999999999
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
+++..++.. |..-|+++.|+.+-.++++|+-|.++++|..
T Consensus 366 ~~cmk~~~a-h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQCMKTLEA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeccCC-CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999998 9999999999999999999999999999974
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.9e-33 Score=230.39 Aligned_cols=234 Identities=22% Similarity=0.346 Sum_probs=201.8
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------CCe
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-------GGE 78 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~ 78 (519)
+.++.||++.|.|+.|. .+.|++|++|.+|+|||+++|+++.+ +..|...|..+.|+.. |.+
T Consensus 230 ~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t---------lihHceaVLhlrf~ng~mvtcSkDrs 298 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT---------LIHHCEAVLHLRFSNGYMVTCSKDRS 298 (499)
T ss_pred HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH---------HhhhcceeEEEEEeCCEEEEecCCce
Confidence 45779999999999997 56999999999999999999996654 6679999999888764 899
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 158 (519)
+.+||+..... ..+...+.||...|+.+.|+ .+++++++.|.+|++|++.+++.++++.+|...|.|+.+. ++
T Consensus 299 iaVWdm~sps~---it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r 371 (499)
T KOG0281|consen 299 IAVWDMASPTD---ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR 371 (499)
T ss_pred eEEEeccCchH---HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce
Confidence 99999987642 25667788999999999997 6699999999999999999999999999999999999875 88
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
++++|+.|.+|++||+..+
T Consensus 372 lvVSGSSDntIRlwdi~~G------------------------------------------------------------- 390 (499)
T KOG0281|consen 372 LVVSGSSDNTIRLWDIECG------------------------------------------------------------- 390 (499)
T ss_pred EEEecCCCceEEEEecccc-------------------------------------------------------------
Confidence 9999999999999998654
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
.++..+.+|+.-|.++.|.. ..+++|+.||+|++||+..
T Consensus 391 -----------------------~cLRvLeGHEeLvRciRFd~------------------krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 391 -----------------------ACLRVLEGHEELVRCIRFDN------------------KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred -----------------------HHHHHHhchHHhhhheeecC------------------ceeeeccccceEEEEeccc
Confidence 23455778999999999976 5699999999999999987
Q ss_pred CC---------ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 319 VP---------PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 319 ~~---------~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
+. ++..+.. |.+.|..+.| |...+++++.|.+|.|||+.++
T Consensus 430 aldpra~~~~~Cl~~lv~-hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 430 ALDPRAPASTLCLRTLVE-HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccCCcccccchHHHhhhh-ccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 64 3344555 8899999999 6678999999999999999876
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8e-31 Score=246.81 Aligned_cols=277 Identities=28% Similarity=0.434 Sum_probs=227.0
Q ss_pred cCcceeEEEEccCC---------CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-
Q 010051 63 HGSAINILRFSPCG---------GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV- 132 (519)
Q Consensus 63 ~~~~v~~~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~- 132 (519)
+...|.++.|++++ +.+++|++..... .....+.+|...|.+++|+|+++++++++.|++|++||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 36788889999884 7888999855521 255666889999999999999999999999999999999
Q ss_pred CCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceee
Q 010051 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF 212 (519)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (519)
..+..++.+.+|...|++++|+|+++++++|+.|++|++||+++++.. .
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-------------------------------~ 282 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-------------------------------R 282 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-------------------------------E
Confidence 556889999999999999999999999999999999999999986421 2
Q ss_pred ecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc-ccccCCCCCC--CeEEEEEcCCccccccc
Q 010051 213 HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR-PALQLPGASK--PVVAVRFCPLAFNLRES 289 (519)
Q Consensus 213 ~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~--~v~~~~~sp~~~~l~~~ 289 (519)
....|...|..++|+++|.+|++++.+ +.+++||...... +...+.++.. +++.+.|+|++
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~s~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~------ 346 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSASYD----------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG------ 346 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEcCCC----------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC------
Confidence 223567789999999999999998766 7999999987653 2445555544 49999999999
Q ss_pred CCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecccccc---EEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccc
Q 010051 290 NSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAA---ITDIAWSNNARYLALSSQDGYCTLVEFENDELGI 366 (519)
Q Consensus 290 ~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~ 366 (519)
.+++++..|+.+++||+..+..+..+.+ |... +.+...++.+.++++|+.|+.|++|++.++....
T Consensus 347 ----------~~ll~~~~d~~~~~w~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 347 ----------KYLLSASLDRTLKLWDLRSGKSVGTYTG-HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred ----------cEEEEecCCCeEEEEEccCCcceeeecc-cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 6688888888999999999999999998 6653 4455668899999999999999999999864433
Q ss_pred eeeecCCcccccCCCCcccccCCccEEEeec--CCcee-eecC
Q 010051 367 PISLSGNKVSKDENKSPLVTKSEDMIIEAST--NDKLV-TAET 406 (519)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~i-~~~~ 406 (519)
.+.+|. ...+..+.+++...++++++ .|+.+ +|..
T Consensus 416 --~l~~h~---~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 416 --RLEGHS---KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred --hhcCCC---CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 334442 35778899999999999988 45444 5543
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-30 Score=211.61 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=226.3
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEE
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN-KGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 172 (519)
..+..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.++|..+.|.++++.|++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3455678899999999999999999999999999999954 345567788999999999999999999999999999999
Q ss_pred ecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceE
Q 010051 173 ANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSA 252 (519)
Q Consensus 173 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i 252 (519)
|.++++.. .....|...++.+.-+.-|..++++..+. +++
T Consensus 118 D~~tG~~~-------------------------------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD---------~t~ 157 (338)
T KOG0265|consen 118 DAETGKRI-------------------------------RKHKGHTSFVNSLDPSRRGPQLVCSGSDD---------GTL 157 (338)
T ss_pred ecccceee-------------------------------ehhccccceeeecCccccCCeEEEecCCC---------ceE
Confidence 99998743 22334556677777666677777765553 799
Q ss_pred EEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecccccc
Q 010051 253 YIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAA 332 (519)
Q Consensus 253 ~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 332 (519)
++||++... .........+++++.|...+ ..+++|+-|+.|++||++.+..+.++.+ |...
T Consensus 158 kl~D~R~k~--~~~t~~~kyqltAv~f~d~s----------------~qv~sggIdn~ikvWd~r~~d~~~~lsG-h~Dt 218 (338)
T KOG0265|consen 158 KLWDIRKKE--AIKTFENKYQLTAVGFKDTS----------------DQVISGGIDNDIKVWDLRKNDGLYTLSG-HADT 218 (338)
T ss_pred EEEeecccc--hhhccccceeEEEEEecccc----------------cceeeccccCceeeeccccCcceEEeec-ccCc
Confidence 999998532 22333446789999999877 5689999999999999999999999999 9999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccce--eeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCCC
Q 010051 333 ITDIAWSNNARYLALSSQDGYCTLVEFENDELGIP--ISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKEP 409 (519)
Q Consensus 333 i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~~ 409 (519)
|+.+..+++|.++.+-+.|.++++||++....... ....++....+.....++|||++..+.+++.|+.+ +|+...+
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 99999999999999999999999999986543322 23334433345667788999999999999988877 8887763
Q ss_pred Cc----------cccccccCCCceEEeccccceeee
Q 010051 410 DK----------RKTEAETKDDETAINGSIAAESRL 435 (519)
Q Consensus 410 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (519)
.+ .......+.++.+.+.+.|+++.+
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 33 233445667777777777777664
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=247.08 Aligned_cols=276 Identities=16% Similarity=0.266 Sum_probs=234.0
Q ss_pred cCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 010051 63 HGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN 133 (519)
Q Consensus 63 ~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 133 (519)
.+..|..++|.|. .|.|++||.+-+ .++..+..|.++|+.++|+|++.++++|+.|..|+||+..
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhh------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 3445566666665 699999999887 6888999999999999999999999999999999999999
Q ss_pred CCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeee
Q 010051 134 KGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFH 213 (519)
Q Consensus 134 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (519)
+.+++.++.+|-..|+.+.|++.-.+++++|.|.+|+||+..+.+. ..+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~----------iav--------------------- 130 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC----------IAV--------------------- 130 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce----------EEE---------------------
Confidence 9999999999999999999999999999999999999999988752 222
Q ss_pred cCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc----------------------------ccc
Q 010051 214 DETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR----------------------------PAL 265 (519)
Q Consensus 214 ~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~----------------------------~~~ 265 (519)
...|..+|.|..|+|....+++++-+ .+|++||+....+ ...
T Consensus 131 ltGHnHYVMcAqFhptEDlIVSaSLD----------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDLIVSASLD----------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EecCceEEEeeccCCccceEEEeccc----------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 23567889999999999999998877 6999999863221 013
Q ss_pred cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC--ceEEEeccccccEEEEEEcCCCC
Q 010051 266 QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP--PIAILAGLHYAAITDIAWSNNAR 343 (519)
Q Consensus 266 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~i~~~~~s~~g~ 343 (519)
.+.||...|+-++|+|.- ..+++|+.|..|++|.+...+ .+.+..+ |.+.|.++-|+|...
T Consensus 201 VLEGHDRGVNwaAfhpTl----------------pliVSG~DDRqVKlWrmnetKaWEvDtcrg-H~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTL----------------PLIVSGADDRQVKLWRMNETKAWEVDTCRG-HYNNVSSVLFHPHQD 263 (1202)
T ss_pred eecccccccceEEecCCc----------------ceEEecCCcceeeEEEeccccceeehhhhc-ccCCcceEEecCccc
Confidence 456899999999999976 568888999999999987543 3556778 999999999999999
Q ss_pred EEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCCC
Q 010051 344 YLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 344 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
++++.|.|++|+|||+.......++.- ..+..+.++.+|...++++|.+.|.+|..-..
T Consensus 264 lIlSnsEDksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred eeEecCCCccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 999999999999999988755444431 24678999999999999999999999887663
No 55
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-30 Score=210.99 Aligned_cols=243 Identities=21% Similarity=0.299 Sum_probs=197.3
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
.+..|.++|++++.+ +.++|+|+.|.+|+|||+.....+
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql--------------------------------------- 76 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL--------------------------------------- 76 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh---------------------------------------
Confidence 345699999999998 999999999999999999866532
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGA--FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
..+-.|.+.|+++.|.++-. +|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.+++-++.+.
T Consensus 77 ---------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 77 ---------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred ---------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence 23334788889999988664 8999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
|+.++.||+-.++......+ ......+.|+|.|.+++++..+
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L--------------------------------~~~at~v~w~~~Gd~F~v~~~~------ 189 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNL--------------------------------KNKATLVSWSPQGDHFVVSGRN------ 189 (362)
T ss_pred CceeeeehhhcCccceeecc--------------------------------CCcceeeEEcCCCCEEEEEecc------
Confidence 99999999988874332222 2223359999999998887764
Q ss_pred ecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEE
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAIL 325 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 325 (519)
.|-+|.+.+.. .+..+ .....+.++.|-.. ..+++|+.++.|.+||..+..+...+
T Consensus 190 -----~i~i~q~d~A~-v~~~i-~~~~r~l~~~~l~~-----------------~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 190 -----KIDIYQLDNAS-VFREI-ENPKRILCATFLDG-----------------SELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred -----EEEEEecccHh-Hhhhh-hccccceeeeecCC-----------------ceEEEecCCceEEEeccCCCccceee
Confidence 78888875432 12222 12245666666544 57889999999999999999999999
Q ss_pred eccccccEEEEEE--cCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 326 AGLHYAAITDIAW--SNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 326 ~~~~~~~i~~~~~--s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
.+ |...|-++.+ .|++.||++++.||.|+|||++...
T Consensus 246 ~A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 246 LA-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ec-chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 99 9999999984 5668899999999999999998663
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.4e-30 Score=232.10 Aligned_cols=275 Identities=24% Similarity=0.414 Sum_probs=227.1
Q ss_pred cccccCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 010051 59 SLSYHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCII 129 (519)
Q Consensus 59 ~~~~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 129 (519)
.+.+|...|.++.|+|+ ++.|.+|++... .....+..|...+..+.|++++++|++++.+|.|++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 35678999999999987 588999999866 355666778899999999999999999999999999
Q ss_pred EEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccc
Q 010051 130 WDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKN 209 (519)
Q Consensus 130 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (519)
|++.+++.+..+..|...+.++.|+++++++++++.+|.|.+||+...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------------- 128 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL----------------------------- 128 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------------------------
Confidence 999998888888899889999999999888888888999999999854311
Q ss_pred eeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCccccccc
Q 010051 210 HLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRES 289 (519)
Q Consensus 210 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 289 (519)
.....+...+.++.|+|++.++++++.+ +.+++||+... .....+..|...+.++.|+|++
T Consensus 129 --~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~------ 189 (289)
T cd00200 129 --TTLRGHTDWVNSVAFSPDGTFVASSSQD----------GTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDG------ 189 (289)
T ss_pred --EEeccCCCcEEEEEEcCcCCEEEEEcCC----------CcEEEEEcccc-ccceeEecCccccceEEECCCc------
Confidence 1111345678899999999888887645 68999998643 4455566788899999999988
Q ss_pred CCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceee
Q 010051 290 NSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPIS 369 (519)
Q Consensus 290 ~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~ 369 (519)
+.+++++.++.|++||+..++.+..+.. |...+.++.|+|++.++++++.||.|++|++..+.....+.
T Consensus 190 ----------~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 190 ----------EKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ----------CEEEEecCCCcEEEEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 4567777789999999999888888877 88899999999999999988889999999998764333332
Q ss_pred ecCCcccccCCCCcccccCCccEEEeecCCcee-ee
Q 010051 370 LSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TA 404 (519)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~ 404 (519)
.+ ...+.++.|++++.+|++++.++.+ +|
T Consensus 259 --~~----~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 259 --GH----TNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred --cc----CCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 22 3578999999999999999988776 44
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=230.04 Aligned_cols=302 Identities=19% Similarity=0.252 Sum_probs=222.7
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEE-----
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIW----- 82 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw----- 82 (519)
.+.||+..|.++++.|.|-.|++|+.|.+|++||++........ ...+. ......|+++.|++.++.|.+.
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--fr~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--FRQLQ--PCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh--hhccC--cccccccceeeecCCCCeEEEEecCcc
Confidence 45789999999999999999999999999999999865432211 11111 2244568999999998776543
Q ss_pred ----EcccCC------CcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce-EEEe-----cccc
Q 010051 83 ----KLHTTE------TGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSV-LQIL-----DAHF 145 (519)
Q Consensus 83 ----~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~-----~~h~ 145 (519)
|-..-. .-+-..-+...+||...++|.+|+|+. ..+++++.||++++||++..+. ++.+ .+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 322110 000011233456899999999999965 5789999999999999987542 2223 2334
Q ss_pred cCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEE
Q 010051 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLA 225 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (519)
-.++.++|++++++||+|..||+|.+|+........ ...+.........|+++.
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--------------------------~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--------------------------VMKVKDAHLPGQDITSIS 371 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCccccc--------------------------ceEeeeccCCCCceeEEE
Confidence 578999999999999999999999999985532111 011111112234799999
Q ss_pred EccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCC--CCeEEEEEcCCcccccccCCCCcccccceEEE
Q 010051 226 WSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGAS--KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIF 303 (519)
Q Consensus 226 ~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~ 303 (519)
||+||++|++-+.+ +.+++||+++..+++....+.. .+-+.++|||+.+.+++|.. +.
T Consensus 372 FS~dg~~LlSRg~D----------~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS----------~~ 431 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFD----------DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS----------AP 431 (641)
T ss_pred eccccchhhhccCC----------CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc----------cc
Confidence 99999999998877 6999999999988887766544 35678999999966655543 12
Q ss_pred EEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 304 AIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 304 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
-+...|.+++||..+...++.+.- ....|..+.|+|.-+.|++++.||.++||-=.
T Consensus 432 ~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 432 NGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 233457899999999999988877 67889999999998889999999999987533
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.8e-32 Score=233.57 Aligned_cols=280 Identities=17% Similarity=0.232 Sum_probs=226.3
Q ss_pred cccccccccCcceeEEEEccC----------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC
Q 010051 55 SYQNSLSYHGSAINILRFSPC----------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD 124 (519)
Q Consensus 55 ~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 124 (519)
.....+.+|+..|.++.|.|. |+.|+||++.... .+++++.+|..+|..++|+++|..+++++.|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 355678899999999999984 7999999998732 7899999999999999999999999999999
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcCCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccC
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDD 203 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
+.|++||+++|+++..+... ..++|+.|+|++ +.|++|+.|+.|+.||+++++..
T Consensus 280 ~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----------------------- 335 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----------------------- 335 (503)
T ss_pred eeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH-----------------------
Confidence 99999999999999988643 678999999998 78999999999999999998621
Q ss_pred CccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCc
Q 010051 204 SKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLA 283 (519)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 283 (519)
.....+-+.|..+.|-++|+++++++.+ ..++||+.+...........+.....++..+|.+
T Consensus 336 --------qeYd~hLg~i~~i~F~~~g~rFissSDd----------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 336 --------QEYDRHLGAILDITFVDEGRRFISSSDD----------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG 397 (503)
T ss_pred --------HHHHhhhhheeeeEEccCCceEeeeccC----------ccEEEEEcCCCccchhhcchhhccCcceecCCCC
Confidence 1122445778899999999999998877 6999999876544444444555567789999998
Q ss_pred ccccccCCCCcccccceEEEEEecCCeEEEEeCCCC---CceEEEecccc--ccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 284 FNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV---PPIAILAGLHY--AAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 284 ~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
.++++-+.|+.|.+|.+... .....+.+ |. +.-..+.|||||++|++|+.||.+.+||
T Consensus 398 ----------------~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 398 ----------------KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ----------------CeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 55677777788999986543 23345566 64 4566789999999999999999999999
Q ss_pred ecCCcccceeeecCCcccccCCCCcccccCCc-cEEEeecCCcee-ee
Q 010051 359 FENDELGIPISLSGNKVSKDENKSPLVTKSED-MIIEASTNDKLV-TA 404 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d~~i-~~ 404 (519)
..+.++...+.. | ...+..+.|+|.. ..+++++-+|.| +|
T Consensus 461 wkt~kl~~~lka--h----~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 461 WKTTKLVSKLKA--H----DQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred chhhhhhhcccc--C----CcceEEEEecCCCcceeEecccCceeEec
Confidence 988765544432 2 3577888999965 778888888877 55
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-30 Score=204.62 Aligned_cols=297 Identities=13% Similarity=0.148 Sum_probs=236.0
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
.++.||..+++.+.|+.+|.+|.+++.|.++.||-..+|+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------------------------- 43 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------------------------- 43 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc----------------------------------------
Confidence 4567899999999999999999999999999999765554
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC-
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS- 165 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~- 165 (519)
.+.++.||++.|+|+..+-+.++|++|+.|.++++||+.+|+++..+... .+|..+.|+++|++++.+..
T Consensus 44 --------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 44 --------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred --------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehh
Confidence 56677789999999999999999999999999999999999999988754 78999999999998887764
Q ss_pred ----CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 166 ----DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 166 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
.+.|.++|++...... ......+......+.++.+.|+|-+++|+++..+
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~------------------------~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~-- 168 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDI------------------------DSEEPYLKIPTPDSKITSALWGPLGETIIAGHED-- 168 (327)
T ss_pred hcCcceEEEEEEccCChhhh------------------------cccCceEEecCCccceeeeeecccCCEEEEecCC--
Confidence 4679999998653211 1111223333445788999999999999998877
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
+.|.+||.++....+.....|...|+.++++||. .++++++.|.+-++||+.+.++
T Consensus 169 --------G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~----------------T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 169 --------GSISIYDARTGKELVDSDEEHSSKINDLQFSRDR----------------TYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred --------CcEEEEEcccCceeeechhhhccccccccccCCc----------------ceEEecccCccceeeeccceee
Confidence 7999999998877777778899999999999998 6688888899999999999999
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE--EecCCccccee----ee--cCCcccccCCCCcccccCCccEE
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLV--EFENDELGIPI----SL--SGNKVSKDENKSPLVTKSEDMII 393 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw--d~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~s~~~~~l 393 (519)
+.++.. ..+|++.+++|....++.|+.....-|= ..+.+++...+ .. -+....+.+.+++++|+|+|+..
T Consensus 225 ~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY 302 (327)
T KOG0643|consen 225 LKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY 302 (327)
T ss_pred EEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc
Confidence 999986 7899999999988777776533222221 11122211110 00 01112456899999999999999
Q ss_pred EeecCCceeee
Q 010051 394 EASTNDKLVTA 404 (519)
Q Consensus 394 ~~~~~d~~i~~ 404 (519)
++|+.|+.|..
T Consensus 303 sSGGEDG~VR~ 313 (327)
T KOG0643|consen 303 SSGGEDGYVRL 313 (327)
T ss_pred ccCCCCceEEE
Confidence 99999999843
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.3e-30 Score=222.70 Aligned_cols=272 Identities=18% Similarity=0.252 Sum_probs=226.7
Q ss_pred CCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------CeEEEEE
Q 010051 14 KPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------GELIIWK 83 (519)
Q Consensus 14 ~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~i~vw~ 83 (519)
+.|.+++|||..+ -+|+.++ -.+.||+..+....+.+ ......++++.|-.|| |.|+|+|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~---------srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF---------SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH---------HhhccceeEEEeecCCeEEEccCCcCcEEEec
Confidence 7899999999766 3555543 45999998887765543 3356777888887764 8999999
Q ss_pred cccCCCcccceeeeccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC-CCeEE
Q 010051 84 LHTTETGQAWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL-SKYVA 161 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~ 161 (519)
+.+. ..+..+.+|..++..+.|+|+ +..|++|+.|+.+++||+.+......+.+|...|+|.+|+|- +..++
T Consensus 97 ~k~r------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 97 MKSR------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred cccH------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 7654 577888999999999999995 567888999999999999998876688999999999999985 45789
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
|||.||.|++||++.... ......|..+|..+.+-|.|..++++++.
T Consensus 171 tGsYDg~vrl~DtR~~~~-------------------------------~v~elnhg~pVe~vl~lpsgs~iasAgGn-- 217 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTS-------------------------------RVVELNHGCPVESVLALPSGSLIASAGGN-- 217 (487)
T ss_pred ecCCCceEEEEEeccCCc-------------------------------eeEEecCCCceeeEEEcCCCCEEEEcCCC--
Confidence 999999999999987531 11222466789999999999999998885
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
.+++||+..+.+.+.....|...|+|+.+..++ ..+++++-|+.+++||+.+.+.
T Consensus 218 ---------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~----------------~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 218 ---------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS----------------TRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred ---------eEEEEEecCCceehhhhhcccceEEEEEeecCC----------------ceEeecccccceEEEEccceEE
Confidence 999999987777777777799999999999987 6688999999999999998998
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
+..+.- .++|.+++.+|+++.++.|-.||.+.+-+...
T Consensus 273 v~s~~~--~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 273 VHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEeeec--ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 888874 88999999999999999999999988764443
No 61
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4.5e-30 Score=220.17 Aligned_cols=296 Identities=19% Similarity=0.184 Sum_probs=234.1
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcc
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~ 85 (519)
++....|.-+|+|++++||..++++++.+++|.=|++.+++....+-..... +..|..+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev--~k~~~~~------------------- 193 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV--LKSHGNP------------------- 193 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh--hhhccCC-------------------
Confidence 4566789999999999999999999999999999999999865322100000 1111110
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
.+.. . .+|...+.+++.|+||++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.
T Consensus 194 -------~k~~-r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 194 -------LKES-R-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred -------CCcc-c-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec
Confidence 0111 1 379999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
|+++++|++..... +-....|++.|..+....-++.+.+++.+
T Consensus 265 Drsvkvw~~~~~s~-------------------------------vetlyGHqd~v~~IdaL~reR~vtVGgrD------ 307 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSY-------------------------------VETLYGHQDGVLGIDALSRERCVTVGGRD------ 307 (479)
T ss_pred CCceEEEehhHhHH-------------------------------HHHHhCCccceeeechhcccceEEecccc------
Confidence 99999999876432 12233567778888887777777776666
Q ss_pred ecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEE
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAIL 325 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 325 (519)
.++++|.+.. .....+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++...+++.+.
T Consensus 308 ----rT~rlwKi~e--esqlifrg~~~sidcv~~In~-----------------~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 308 ----RTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-----------------EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred ----ceeEEEeccc--cceeeeeCCCCCeeeEEEecc-----------------cceeeccCCceEEEeeecccCceeEe
Confidence 7999999954 445567788889999999876 56899999999999999999998877
Q ss_pred ecccc-----------ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc--cceeeecCCcccccCCCCcccccCCccE
Q 010051 326 AGLHY-----------AAITDIAWSNNARYLALSSQDGYCTLVEFENDEL--GIPISLSGNKVSKDENKSPLVTKSEDMI 392 (519)
Q Consensus 326 ~~~~~-----------~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 392 (519)
...|. ..|++++..|...++++|+.+|+|++|.+..+-. .....++ ..+-|+.++|+++|++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-----~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-----LVGFVNSLAFSNSGKR 439 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-----cccEEEEEEEccCCCE
Confidence 65442 2799999999999999999999999999998732 2112221 2467889999999996
Q ss_pred EEee
Q 010051 393 IEAS 396 (519)
Q Consensus 393 l~~~ 396 (519)
|+++
T Consensus 440 ivag 443 (479)
T KOG0299|consen 440 IVAG 443 (479)
T ss_pred EEEe
Confidence 6665
No 62
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=8.3e-30 Score=229.99 Aligned_cols=282 Identities=16% Similarity=0.187 Sum_probs=211.3
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC-----------CCEEEEEeCCCeEEEEEcCCCceEEEe----
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD-----------GAFLLSGSVDNSCIIWDVNKGSVLQIL---- 141 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~vwd~~~~~~~~~~---- 141 (519)
..|+|||++...... ++ ..+--|...|+.+.--|. ...+.+++.|++|++|++..+..-..+
T Consensus 346 hSlYvWDvrD~~kvg--k~-~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi 422 (1080)
T KOG1408|consen 346 HSLYVWDVRDVNKVG--KC-SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI 422 (1080)
T ss_pred ceEEEEecccccccc--ce-eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeeccc
Confidence 566677776543221 11 122236677776665441 124889999999999999753110000
Q ss_pred ---------------------------------cccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccce
Q 010051 142 ---------------------------------DAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYV 188 (519)
Q Consensus 142 ---------------------------------~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 188 (519)
-...-.+++++.+|++++|++|..-|+|++|++...+.
T Consensus 423 ls~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--------- 493 (1080)
T KOG1408|consen 423 LSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--------- 493 (1080)
T ss_pred chhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------
Confidence 01224689999999999999999999999999987543
Q ss_pred eeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC---CCeEEEecCCcceeeeecccceEEEEeccCCCcccc
Q 010051 189 CQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD---GSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL 265 (519)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~---g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 265 (519)
+.....|...|.++.||-- .++|++++.+ .-|++||......++.
T Consensus 494 ----------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrd----------RlIHV~Dv~rny~l~q 541 (1080)
T KOG1408|consen 494 ----------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRD----------RLIHVYDVKRNYDLVQ 541 (1080)
T ss_pred ----------------------hhheecccceeEEEeecCchhhhHhhhhccCC----------ceEEEEecccccchhh
Confidence 2333467788999999852 4566666555 6899999998888899
Q ss_pred cCCCCCCCeEEEEEcCCc--ccccccCCCCcc--c-----------------------------ccceEEEEEecCCeEE
Q 010051 266 QLPGASKPVVAVRFCPLA--FNLRESNSAGFF--K-----------------------------LPYRLIFAIATLNSLY 312 (519)
Q Consensus 266 ~~~~~~~~v~~~~~sp~~--~~l~~~~~~g~~--~-----------------------------~~~~~~~~~~~d~~i~ 312 (519)
++.+|...|+++.|.-.| ..+++++.|..+ + ....++++++.|..|+
T Consensus 542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 999999999999998877 445554443322 0 1237899999999999
Q ss_pred EEeCCCCCceEEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCc
Q 010051 313 IYDTESVPPIAILAGL--HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSED 390 (519)
Q Consensus 313 vwd~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (519)
||++.+++..+.|++. |.+....+...|.|-|||+.+.|.++.++|+-+++... .+.||. +.|+.+.|++|-
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA--~m~GHs----E~VTG~kF~nDC 695 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA--QMTGHS----EAVTGVKFLNDC 695 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh--hhcCcc----hheeeeeecccc
Confidence 9999999999999874 55678889999999999999999999999999997543 444554 689999999999
Q ss_pred cEEEeecCCcee-eecCCC
Q 010051 391 MIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 391 ~~l~~~~~d~~i-~~~~~~ 408 (519)
+.|.+.+.|++| +|....
T Consensus 696 kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhheeecCCceEEEEECch
Confidence 999999888888 776554
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=210.65 Aligned_cols=293 Identities=19% Similarity=0.228 Sum_probs=224.5
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCC----cccccc-----ccccccccccccCcceeEEEEccC--
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSG----EKQKKI-----PTASYQNSLSYHGSAINILRFSPC-- 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~----~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~-- 75 (519)
.....|..++.+.+|||||.++|+|+.|-.|+|.|++.. +....+ .....+.++-.|.+.|+++.|.|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 345679999999999999999999999999999998721 111111 112245667789999999999986
Q ss_pred -------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe---cccc
Q 010051 76 -------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL---DAHF 145 (519)
Q Consensus 76 -------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~ 145 (519)
|++|+++|.......+. .+.++ ...+|.++.|+|.|.+|+.|....++++||+++-++.... ..|.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA---~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRA---FKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHH---HHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 79999999976533322 22222 4678999999999999999999999999999998876544 5689
Q ss_pred cCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEE
Q 010051 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLA 225 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (519)
+.|+++.+++.+++.++++.||.|++||--.++.... +........|.+..
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t-----------------------------~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT-----------------------------IGNAHGGSEVCSAV 312 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH-----------------------------HHhhcCCceeeeEE
Confidence 9999999999999999999999999999766542211 11223356789999
Q ss_pred EccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCC-----CCCeEEEEEcCCcccccccCCCCcccccce
Q 010051 226 WSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGA-----SKPVVAVRFCPLAFNLRESNSAGFFKLPYR 300 (519)
Q Consensus 226 ~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~ 300 (519)
|..+|+++++.+-+ ..+++|.+.+. +++..+.+- ...-+...|+....+
T Consensus 313 Ftkn~kyiLsSG~D----------S~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdy--------------- 366 (430)
T KOG0640|consen 313 FTKNGKYILSSGKD----------STVKLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDY--------------- 366 (430)
T ss_pred EccCCeEEeecCCc----------ceeeeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccce---------------
Confidence 99999999997766 68999999754 444443332 122334455554433
Q ss_pred EEEEEe-cCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 301 LIFAIA-TLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 301 ~~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
++.-. ..+.+.-||.+++..+..+..+|.+.+..+.-||.+.-+++|+.|-.+++|--
T Consensus 367 -Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 367 -VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred -EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 22222 23689999999998888777669999999999999999999999999999974
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.9e-31 Score=220.51 Aligned_cols=278 Identities=17% Similarity=0.272 Sum_probs=225.2
Q ss_pred EecCCCCCEEEEEEecCC-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc-------CCCeE
Q 010051 8 INWHDTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP-------CGGEL 79 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~i 79 (519)
.+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+... +..|.+.|..|++.. +|.+|
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---------f~AH~G~V~Gi~v~~~~~~tvgdDKtv 131 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---------FKAHEGLVRGICVTQTSFFTVGDDKTV 131 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---------eecccCceeeEEecccceEEecCCcce
Confidence 458999999999999988 7899999999999999998886654 566888888887754 47899
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC-
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK- 158 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~- 158 (519)
+.|.+... ...++. ....+..+.-+..+..++|++. .|.|||.....++..+.-....|.++.|+|...
T Consensus 132 K~wk~~~~-------p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs 201 (433)
T KOG0268|consen 132 KQWKIDGP-------PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS 201 (433)
T ss_pred eeeeccCC-------cceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch
Confidence 99988653 333333 3455677777777778888875 599999998889999988888999999999654
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
.|++|+.|+.|.+||++...+.....+ ...-+.++|+|.+-.++++..
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~--------------------------------~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVIL--------------------------------TMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred heeeeccCCceEEEecccCCccceeee--------------------------------eccccceecCccccceeeccc
Confidence 567888999999999999864332221 223457999997666666665
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
+ ..++.||++....++....+|.+.|.++.|||.| .-+++|+.|.+|+||.+..
T Consensus 250 D----------~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG----------------~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 250 D----------HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG----------------QEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred c----------ccceehhhhhhcccchhhcccceeEEEeccCCCc----------------chhccccccceEEEeecCC
Confidence 5 6999999999999999999999999999999999 4577788888999999988
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
+.....+.......|.++.||-|.+|+++||.|+.|++|.-...
T Consensus 304 ~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 304 GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 76555554434678999999999999999999999999987544
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=217.01 Aligned_cols=282 Identities=20% Similarity=0.288 Sum_probs=225.5
Q ss_pred ccccccCcceeEEEEccCC---------CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010051 58 NSLSYHGSAINILRFSPCG---------GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128 (519)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 128 (519)
..+..|.+.|..+.||++| .+..+|.+..... ++..+++.+|..+|..+.||||.++|++++.|..+.
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 4577899999999999985 5667898865533 577889999999999999999999999999999999
Q ss_pred EEEcCCCceEEEec-ccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccc
Q 010051 129 IWDVNKGSVLQILD-AHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSA 207 (519)
Q Consensus 129 vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (519)
+||+.+|.+...+. +|...+.+++|.|||..|++|+.|++|..||++......-.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~------------------------ 350 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE------------------------ 350 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc------------------------
Confidence 99999999887764 34678999999999999999999999999999876421100
Q ss_pred cceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCccccc
Q 010051 208 KNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLR 287 (519)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 287 (519)
.. -...|..++.++||+++++.+.+ ..+++|+...... ..+.....+|+++..|.++
T Consensus 351 ------gv-r~~~v~dlait~Dgk~vl~v~~d----------~~i~l~~~e~~~d--r~lise~~~its~~iS~d~---- 407 (519)
T KOG0293|consen 351 ------GV-RDPKVHDLAITYDGKYVLLVTVD----------KKIRLYNREARVD--RGLISEEQPITSFSISKDG---- 407 (519)
T ss_pred ------cc-ccceeEEEEEcCCCcEEEEEecc----------cceeeechhhhhh--hccccccCceeEEEEcCCC----
Confidence 00 01347799999999999998766 6889998864322 1134456789999999998
Q ss_pred ccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecccccc--EEEEEEcC-CCCEEEEEeCCCcEEEEEecCCcc
Q 010051 288 ESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAA--ITDIAWSN-NARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 288 ~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--i~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
++++..-.+..|++||++..+.+..+.+ |... |..-+|.- +..++++|+.|+.|+||+..++++
T Consensus 408 ------------k~~LvnL~~qei~LWDl~e~~lv~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 408 ------------KLALVNLQDQEIHLWDLEENKLVRKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred ------------cEEEEEcccCeeEEeecchhhHHHHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 5677777788999999998888888888 6543 44445544 458999999999999999998854
Q ss_pred cceeeecCCcccccCCCCcccccCCc-cEEEeecCCcee-eecCCC
Q 010051 365 GIPISLSGNKVSKDENKSPLVTKSED-MIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d~~i-~~~~~~ 408 (519)
...++||. ..+++++|+|.. .++|++++|++| +|...+
T Consensus 475 --l~~LsGHs----~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 475 --LAVLSGHS----KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred --eEeecCCc----ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 34566776 589999999976 677899999998 666543
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=203.72 Aligned_cols=274 Identities=20% Similarity=0.306 Sum_probs=216.0
Q ss_pred EEEEEecCC-CEEEEEc-------CCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCe
Q 010051 17 LTLDFHPIS-GLLATGG-------ADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGE 78 (519)
Q Consensus 17 ~~~~~sp~~-~~la~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~ 78 (519)
.++.|||-- ++||++. ..|.+.|.++...+.+..... + .-.+.+..++|++. ||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s------~-d~~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS------Y-DTEDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe------e-ecccceeEeeecCCCcceEEEEecCce
Confidence 578999943 3454432 368899999875554433211 1 13456777888776 799
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC-
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL- 156 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~- 156 (519)
++|||+.... ..+..++.|...|.++.|++ ++..+++++-|++|++|+...++.++++.+|...|....|+|.
T Consensus 85 Lrl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 85 LRLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred EEEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence 9999964332 47788889999999999999 5567888899999999999999999999999999999999984
Q ss_pred CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEe
Q 010051 157 SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVP 236 (519)
Q Consensus 157 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 236 (519)
.+.|++++.||++++||++..... .....|...|.++.|+.-...++++
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~-------------------------------~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKF-------------------------------MSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCce-------------------------------eEEEeccceeEeecccccCCcEEEe
Confidence 778999999999999998875311 1122445678899999876666655
Q ss_pred cCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 237 AGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 237 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
++.. +.|+.||++....++..+.+|.-.|..++|||.... .+++++.|-+++|||.
T Consensus 209 g~vd---------~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~---------------lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 209 GGVD---------NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS---------------LLASASYDMTVRIWDP 264 (311)
T ss_pred cCCC---------ceEEEEehhhccccceeecCCceEEEEEecCcchhh---------------HhhhccccceEEeccc
Confidence 4432 799999999999999999999999999999997653 4778888889999999
Q ss_pred CCCC-ceEEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 010051 317 ESVP-PIAILAGLHYAAITDIAWSNN-ARYLALSSQDGYCTLVE 358 (519)
Q Consensus 317 ~~~~-~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vwd 358 (519)
..+. .+.+... |..-+..+.||+- +.++|+++.|+.++||+
T Consensus 265 ~~~ds~~e~~~~-HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 265 ERQDSAIETVDH-HTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccchhhhhhhhc-cceEEeccccccccCceeeecccccceeeec
Confidence 8554 3444444 8899999999984 57899999999999998
No 67
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=205.86 Aligned_cols=294 Identities=19% Similarity=0.280 Sum_probs=214.1
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CC
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GG 77 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~ 77 (519)
.+.+|.+.|++++||.||++||+++.|+.|+||++..-..... ..+. ..---+..+.++|+|| +.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH----r~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH----RCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh----hHhh-ccccCCCceEEEECCCcceEEEEEccCC
Confidence 4578999999999999999999999999999999876432110 0000 0011124566777777 56
Q ss_pred eEEEEEcccCCCccc------ceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEE
Q 010051 78 ELIIWKLHTTETGQA------WKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGV 151 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 151 (519)
+|++|.+.....+.- +..+.--.-|.-.+..+-...++.+|++++.|..|.+|++. |+.+..+......-+..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 677776654332210 01111112355666677777788999999999999999997 99999888777777888
Q ss_pred EEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 152 AWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 152 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
+.+|+|+++++++..-.+++|.+--.+- +.......++....|.+.|..++|+++..
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kd-----------------------G~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKD-----------------------GTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccC-----------------------cchhhhhhhheeccchhheeeeeeCCCcc
Confidence 9999999999999999999998754331 11223344566778899999999999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCC----cc--cccC----CCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLS----RP--ALQL----PGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~--~~~~----~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
.+++.+.+ +.+++||..-.. .+ +... ....+.-..+..||.|+.||
T Consensus 292 r~vtvSkD----------G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-------------- 347 (420)
T KOG2096|consen 292 RAVTVSKD----------GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA-------------- 347 (420)
T ss_pred eeEEEecC----------CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE--------------
Confidence 99998888 699999975221 11 1111 11122334789999986543
Q ss_pred EEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 302 IFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
.+....|.+|..++++....+...|...|++++|+++|+++++++ |..++++.
T Consensus 348 ---~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 348 ---VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ---eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 444457999999999988888878999999999999999999987 78888876
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=201.74 Aligned_cols=279 Identities=17% Similarity=0.207 Sum_probs=205.5
Q ss_pred eeEEecCCCCCEEEEEEec-CCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEE
Q 010051 5 TLQINWHDTKPVLTLDFHP-ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWK 83 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp-~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~ 83 (519)
.+.+.....+.|.+|+||| ...+|++++.|++||+|+++.....
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~----------------------------------- 63 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL----------------------------------- 63 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcc-----------------------------------
Confidence 3445556778999999999 4557779999999999999763210
Q ss_pred cccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC--eEE
Q 010051 84 LHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK--YVA 161 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~ 161 (519)
..+....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+... .|+
T Consensus 64 -----------~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 64 -----------VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred -----------cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeE
Confidence 112233488999999999999999999999999999999995 456788999999999987655 799
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
|||.|.+|+.||++...+.....+ +..++++.. --..++++..+
T Consensus 132 TGSWDKTlKfWD~R~~~pv~t~~L--------------------------------PeRvYa~Dv--~~pm~vVata~-- 175 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPVATLQL--------------------------------PERVYAADV--LYPMAVVATAE-- 175 (347)
T ss_pred ecccccceeecccCCCCeeeeeec--------------------------------cceeeehhc--cCceeEEEecC--
Confidence 999999999999997654332222 333444433 23455555555
Q ss_pred eeeeecccceEEEEeccCCCcccccCC-CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLP-GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV- 319 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~- 319 (519)
+.|.+|++++......... ...-.+.+++..++... .+.|+.+|.+.+..+..+
T Consensus 176 --------r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~----------------~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 176 --------RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG----------------FALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred --------CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc----------------eEeeeecceEEEEecCCCC
Confidence 6899999976554443332 23346788888887733 466777778888888776
Q ss_pred -CceEEEecccc---------ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCC
Q 010051 320 -PPIAILAGLHY---------AAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSE 389 (519)
Q Consensus 320 -~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (519)
+.-..|+. |. -.|++++|+|.-..|+|++.||++.+||-+........ + .+...+++..|+.+
T Consensus 232 ~~~nFtFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s--~----~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 232 PKDNFTFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS--E----THPQPITCCSFNRN 304 (347)
T ss_pred ccCceeEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc--C----cCCCccceeEecCC
Confidence 44456666 54 25788999999999999999999999998765322221 1 13468999999999
Q ss_pred ccEEEeec
Q 010051 390 DMIIEAST 397 (519)
Q Consensus 390 ~~~l~~~~ 397 (519)
|.+++-+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 99887653
No 69
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.8e-29 Score=231.53 Aligned_cols=259 Identities=14% Similarity=0.187 Sum_probs=191.8
Q ss_pred EecCCCCCEEEEEEec-CCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 8 INWHDTKPVLTLDFHP-ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp-~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
++.+|.+.|++++|+| ++++||+|+.|++|+|||+.++......
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~----------------------------------- 114 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI----------------------------------- 114 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-----------------------------------
Confidence 4678999999999999 8899999999999999999765321100
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
...+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.
T Consensus 115 ------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 115 ------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred ------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC
Confidence 02345567799999999999985 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCc-ceeeEEEEccCCCeEEEecCCcceee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLP-SFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
|+.|++||+++++... ....+. ..+..+.|.+++..+++++.+
T Consensus 189 Dg~IrIwD~rsg~~v~-------------------------------tl~~H~~~~~~~~~w~~~~~~ivt~G~s----- 232 (493)
T PTZ00421 189 DKKLNIIDPRDGTIVS-------------------------------SVEAHASAKSQRCLWAKRKDLIITLGCS----- 232 (493)
T ss_pred CCEEEEEECCCCcEEE-------------------------------EEecCCCCcceEEEEcCCCCeEEEEecC-----
Confidence 9999999998764211 001111 123467888988887765532
Q ss_pred eecccceEEEEeccCCCcccccCCCC-CCCeEEEEEcCCcccccccCCCCcccccceEEEEEe-cCCeEEEEeCCCCCce
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGA-SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA-TLNSLYIYDTESVPPI 322 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~-~d~~i~vwd~~~~~~~ 322 (519)
...++.+++||++....+......+ ...+....|++++ +++++++ .|+.|++||+.+++.+
T Consensus 233 -~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~----------------~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 233 -KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT----------------NLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred -CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC----------------CEEEEEEeCCCeEEEEEeeCCceE
Confidence 1223789999998766555443323 3456667788887 4566655 5999999999999877
Q ss_pred EEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 323 AILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
......+..++..++|.|.-..=+ ..--..++|.+...
T Consensus 296 ~~~~~~s~~~~~g~~~~pk~~~dv--~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 296 FCSSYSSVEPHKGLCMMPKWSLDT--RKCEIARFYALTYH 333 (493)
T ss_pred EEeeccCCCCCcceEecccccccc--cceeeeEEEEecCC
Confidence 766553556788999988632111 11123466666543
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=4.9e-29 Score=228.92 Aligned_cols=372 Identities=16% Similarity=0.171 Sum_probs=278.9
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC------
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG------ 76 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 76 (519)
++.+..+.++...|+++.=+|--..+|.|..+|+|.|+++..++.+.++.. ..+.|+.++|..||
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~---------d~g~VtslSFrtDG~p~las 262 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ---------DWGRVTSLSFRTDGNPLLAS 262 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc---------cccceeEEEeccCCCeeEEe
Confidence 445566678889999999999999999999999999999999998877652 13667777776654
Q ss_pred ----CeEEEEEcccCCCcccceeeecc-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceEEEecccccC
Q 010051 77 ----GELIIWKLHTTETGQAWKVLKNL-SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG----SVLQILDAHFHY 147 (519)
Q Consensus 77 ----~~i~vw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~ 147 (519)
|.+.+||++.. +.+..+ ..|.+.|..+.|.|....|++++.|+.+++|=.+++ +.++.-.+|..+
T Consensus 263 ~~~~G~m~~wDLe~k------kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKK------KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred ccCCceEEEEEcCCC------eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence 88999999876 333333 368899999999999999999999998888866654 445666899999
Q ss_pred eEEEEEc-CCCCeEEEeeCCCeEEEEecCCCCcccc------------------ccccceeeEEEeccCcc-------cc
Q 010051 148 VQGVAWD-PLSKYVASLSSDRTCRIYANRPTKSKGV------------------EKMNYVCQHVITKAGQH-------ST 201 (519)
Q Consensus 148 v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~~-------~~ 201 (519)
..++.|. .++..+.+++.|++++.+++........ ......+...+...... ..
T Consensus 337 p~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~ 416 (910)
T KOG1539|consen 337 PSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVIT 416 (910)
T ss_pred chheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeE
Confidence 9999998 6788999999999999887654221100 00001111111111100 00
Q ss_pred cCCcccc------------ceeeec---CCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccccc
Q 010051 202 DDSKSAK------------NHLFHD---ETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ 266 (519)
Q Consensus 202 ~~~~~~~------------~~~~~~---~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 266 (519)
....... .+.+.. ......+++++.++.|++.+.|.+. +.|-+|++..+- ....
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~----------G~Id~fNmQSGi-~r~s 485 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK----------GTIDRFNMQSGI-HRKS 485 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC----------CeEEEEEcccCe-eecc
Confidence 0000000 111111 1134668899999999999998877 689999987543 2233
Q ss_pred C---CCCCCCeEEEEEcCCcccccccCCCCcccccc-------------------------eEEEEEecCCeEEEEeCCC
Q 010051 267 L---PGASKPVVAVRFCPLAFNLRESNSAGFFKLPY-------------------------RLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 267 ~---~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~-------------------------~~~~~~~~d~~i~vwd~~~ 318 (519)
+ +.|..+|+.++....++.+++++.+|.+..|. ..++.+..|-.|+++|+.+
T Consensus 486 f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 3 58999999999999999999999988876543 3456677788999999999
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecC
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTN 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 398 (519)
.+.++.+.+ |...|++++|||||++|++++.|++|++||+.++.+...+.+ ......+.|||+|.+||+...
T Consensus 566 ~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-------d~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 566 RKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-------DSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred hhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-------CCcceeeEECCCCCEEEEEEe
Confidence 999999999 999999999999999999999999999999999977666654 345688999999999999886
Q ss_pred C--ceeeecCCC
Q 010051 399 D--KLVTAETKE 408 (519)
Q Consensus 399 d--~~i~~~~~~ 408 (519)
| +...|.+..
T Consensus 638 d~~gIylWsNks 649 (910)
T KOG1539|consen 638 DQNGIYLWSNKS 649 (910)
T ss_pred cCceEEEEEchh
Confidence 5 556887764
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=207.00 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=222.2
Q ss_pred eccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC------------C------ceEEEecccccCeEEEEEcCCCC
Q 010051 97 KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK------------G------SVLQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 97 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------------~------~~~~~~~~h~~~v~~~~~~~~~~ 158 (519)
..+..|..++.+.+|++||.++++|+.|..|++.|++. | -.++++-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34567999999999999999999999999999999872 1 24677888999999999999999
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
.|++++.|++|++||+.....+... .......+|.+++|+|.|.+|++++.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~-----------------------------K~~qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAF-----------------------------KVFQDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHH-----------------------------HHhhccceeeeEeecCCCceEEEecC
Confidence 9999999999999999764322111 11122356889999999999999887
Q ss_pred CcceeeeecccceEEEEeccCCCcccc--cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPAL--QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
. ..+++||+.+.+.-+. .-.+|.+.|+++.+++.| ++.++++.||.|++||-
T Consensus 237 H----------p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~----------------~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 237 H----------PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG----------------SLYVTASKDGAIKLWDG 290 (430)
T ss_pred C----------CceeEEeccceeEeeecCcccccccceeEEEecCCc----------------cEEEEeccCCcEEeecc
Confidence 7 6899999976543222 234788999999999998 67888899999999999
Q ss_pred CCCCceEEEecccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEe
Q 010051 317 ESVPPIAILAGLHY-AAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEA 395 (519)
Q Consensus 317 ~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 395 (519)
-+++++.++...|. ..|.+..|..+|+|+++.+.|..+++|.+.++.....+.-.|... ....-+...|+....+++.
T Consensus 291 VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg-rq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 291 VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG-RQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc-chhhhhhhhhcCccceEEc
Confidence 99999999887676 469999999999999999999999999999997766665543321 1112233344444444433
Q ss_pred ec-------------CCceeeecCCCCCccccccccCCCceEEeccccceeeeeccc
Q 010051 396 ST-------------NDKLVTAETKEPDKRKTEAETKDDETAINGSIAAESRLIEPE 439 (519)
Q Consensus 396 ~~-------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (519)
-. .++.-.|..++.....|...++..+..++.+.|.+.|+|-..
T Consensus 370 pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 22 223335555566667788888899999999999999999543
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2e-30 Score=219.12 Aligned_cols=274 Identities=20% Similarity=0.247 Sum_probs=222.8
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeE
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGEL 79 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i 79 (519)
+..|.+.|..+.|-++...|++|+.|..|++|++..++.. ...+|.+..+.++.+.|.++ |+.+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-------hhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 4568899999999999999999999999999999877622 23457777788888888776 6889
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCe
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKY 159 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 159 (519)
++|++... +...++.+|.+.|+++.|......+++|+.|.+|++||+....+..++..- ..+..|+.+ ...
T Consensus 244 r~Wnvd~~------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~ 314 (459)
T KOG0288|consen 244 RLWNVDSL------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--ISD 314 (459)
T ss_pred eeeeccch------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--cee
Confidence 99999887 788999999999999999988777999999999999999998887766432 445666665 567
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
++++..|+.|++||.+..... ...+..+.|+++..+++|..+++++.+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~--------------------------------~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKT--------------------------------RSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeecccccceEEEeccCCcee--------------------------------eEeecCcceeeEeeccCCeEEeeecCC
Confidence 889999999999999886532 122335689999999999999998777
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCC----CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPG----ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
..+.++|+++.... ..+.. .....+.+.|||++ .|+++|+.||.|+||+
T Consensus 363 ----------dtl~viDlRt~eI~-~~~sA~g~k~asDwtrvvfSpd~----------------~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 363 ----------DTLKVIDLRTKEIR-QTFSAEGFKCASDWTRVVFSPDG----------------SYVAAGSADGSVYIWS 415 (459)
T ss_pred ----------CceeeeecccccEE-EEeeccccccccccceeEECCCC----------------ceeeeccCCCcEEEEE
Confidence 57888888754321 11111 12238899999999 5678888888999999
Q ss_pred CCCCCceEEEeccccc-cEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010051 316 TESVPPIAILAGLHYA-AITDIAWSNNARYLALSSQDGYCTLV 357 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~i~vw 357 (519)
+.++++...+...+.. .|++++|+|.|.+|++++.++.+.+|
T Consensus 416 v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 416 VFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999988874444 69999999999999999999999999
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-27 Score=195.56 Aligned_cols=266 Identities=16% Similarity=0.230 Sum_probs=213.4
Q ss_pred cCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEE
Q 010051 63 HGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV--DNSCIIWD 131 (519)
Q Consensus 63 ~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd 131 (519)
..+.|+++.|+++ |..|+|||..++ +.+..+..+...+..++|......++.++. |.+|+..+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 4556666666665 578999999988 677888878889999999887777777776 88999999
Q ss_pred cCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCcccccee
Q 010051 132 VNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHL 211 (519)
Q Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (519)
+.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..+......+..
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~------------------------ 142 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG------------------------ 142 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC------------------------
Confidence 99999999999999999999999999999999999999999999766433322211
Q ss_pred eecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC-cccccCC---CCCCCeEEEEEcCCccccc
Q 010051 212 FHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS-RPALQLP---GASKPVVAVRFCPLAFNLR 287 (519)
Q Consensus 212 ~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~ 287 (519)
-..++|.|.|-.+|++.+. ..|++||++... .|...+. +.....+.+.|||+|
T Consensus 143 ---------~pi~AfDp~GLifA~~~~~----------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG---- 199 (311)
T KOG1446|consen 143 ---------RPIAAFDPEGLIFALANGS----------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG---- 199 (311)
T ss_pred ---------CcceeECCCCcEEEEecCC----------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC----
Confidence 1258999999999998876 589999998763 4544443 346678999999999
Q ss_pred ccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccE---EEEEEcCCCCEEEEEeCCCcEEEEEecCCcc
Q 010051 288 ESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAI---TDIAWSNNARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 288 ~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i---~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
++++.+...+.+++.|.-+|..+..+.. +...- ...+|+||++++++|+.||+|.+|+++++..
T Consensus 200 ------------K~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 200 ------------KSILLSTNASFIYLLDAFDGTVKSTFSG-YPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ------------CEEEEEeCCCcEEEEEccCCcEeeeEee-ccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 4567777777999999999998888877 54332 5789999999999999999999999988854
Q ss_pred cceeeecCCcccccCCCCcccccCCccEEEeecCC
Q 010051 365 GIPISLSGNKVSKDENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 399 (519)
...+. +. ....+.++.|+|.-..+++++..
T Consensus 267 v~~~~--~~---~~~~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 267 VAVLR--GP---NGGPVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred eeEec--CC---CCCCccccccCCceeeeeecCce
Confidence 43333 32 24678888999988777776654
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-28 Score=222.14 Aligned_cols=242 Identities=24% Similarity=0.368 Sum_probs=200.3
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccc-cCcceeEEEEccC-------CCe
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSY-HGSAINILRFSPC-------GGE 78 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-------~~~ 78 (519)
.+..-+.+.|+++.|+++|.+||+|..+|.|.|||....+.+.. +.+ |...|.+++|... ++.
T Consensus 211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---------~~~~h~~rvg~laW~~~~lssGsr~~~ 281 (484)
T KOG0305|consen 211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---------LRGSHASRVGSLAWNSSVLSSGSRDGK 281 (484)
T ss_pred EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---------ccCCcCceeEEEeccCceEEEecCCCc
Confidence 34434489999999999999999999999999999988876554 444 8999999999865 689
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC-C
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL-S 157 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~ 157 (519)
|..+|++.... ....+.+|...|..++|++|+.+||+|+.|+.+.|||......+..+..|.++|.+++|+|- .
T Consensus 282 I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 282 ILNHDVRISQH-----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS 356 (484)
T ss_pred EEEEEEecchh-----hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc
Confidence 99999987742 22348889999999999999999999999999999999888889999999999999999994 5
Q ss_pred CeEEEee--CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEE
Q 010051 158 KYVASLS--SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLV 235 (519)
Q Consensus 158 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 235 (519)
..||+|+ .|+.|++||..++.... .....+.|.++.|++..+-|++
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~--------------------------------~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARID--------------------------------SVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEec--------------------------------ccccCCceeeEEEcCCCCEEEE
Confidence 6777764 59999999998765211 1122355667777777666665
Q ss_pred ecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
+.+. .++.|.||+
T Consensus 405 thG~-------------------------------------------------------------------s~n~i~lw~ 417 (484)
T KOG0305|consen 405 THGY-------------------------------------------------------------------SENQITLWK 417 (484)
T ss_pred ecCC-------------------------------------------------------------------CCCcEEEEe
Confidence 4332 123688999
Q ss_pred CCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 316 TESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
..+.+.+..+.+ |...|..+++||||..+++|+.|.++++|++-..
T Consensus 418 ~ps~~~~~~l~g-H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 418 YPSMKLVAELLG-HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ccccceeeeecC-CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999899999999 9999999999999999999999999999998764
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=196.43 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=208.1
Q ss_pred ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 98 NLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 98 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
.+++|..+++.+.|+.+|.+|++++.|.++.||--.+|+.+.++.+|.+.|+++..+-+.+++++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 35789999999999999999999999999999998899999999999999999999999999999999999999999998
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEec
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSR 257 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~ 257 (519)
+.... ...+..|..+.|+++|.+++++.... ....+.|.++++
T Consensus 85 k~la~--------------------------------~k~~~~Vk~~~F~~~gn~~l~~tD~~-----mg~~~~v~~fdi 127 (327)
T KOG0643|consen 85 KQLAT--------------------------------WKTNSPVKRVDFSFGGNLILASTDKQ-----MGYTCFVSVFDI 127 (327)
T ss_pred cEEEE--------------------------------eecCCeeEEEeeccCCcEEEEEehhh-----cCcceEEEEEEc
Confidence 74322 23357788999999999999877542 233367889998
Q ss_pred cCCC------cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc
Q 010051 258 KDLS------RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA 331 (519)
Q Consensus 258 ~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 331 (519)
+... .|...+..+...++.+.|.|-+ .+|++|..+|.|.+||+++|+.+......|..
T Consensus 128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~----------------~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~ 191 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLG----------------ETIIAGHEDGSISIYDARTGKELVDSDEEHSS 191 (327)
T ss_pred cCChhhhcccCceEEecCCccceeeeeecccC----------------CEEEEecCCCcEEEEEcccCceeeechhhhcc
Confidence 7432 4567777888999999999988 67888999999999999998666555444999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEe-ecCCceeeecCC
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEA-STNDKLVTAETK 407 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~d~~i~~~~~ 407 (519)
.|++|++++|..++++++.|.+-++||+.+-+..+.+.. ..++++.+++|-...++. |+.+..-|....
T Consensus 192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-------e~PvN~aaisP~~d~VilgGGqeA~dVTTT~ 261 (327)
T KOG0643|consen 192 KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-------ERPVNTAAISPLLDHVILGGGQEAMDVTTTS 261 (327)
T ss_pred ccccccccCCcceEEecccCccceeeeccceeeEEEeee-------cccccceecccccceEEecCCceeeeeeeec
Confidence 999999999999999999999999999998877666653 568899999997655554 445544444443
No 76
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-28 Score=216.63 Aligned_cols=167 Identities=23% Similarity=0.342 Sum_probs=150.3
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 75 (519)
+..++.+..|.+-|+|++.+|..+++++++.|-+|++||.+.+-. ....+.+|..-|.+++|+|.
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa--------~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA--------CEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee--------eeeEEcCcceEEEEEEecCCCccceee
Confidence 456778889999999999999999999999999999999986532 34558899999999999998
Q ss_pred ---CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEE
Q 010051 76 ---GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG--AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQG 150 (519)
Q Consensus 76 ---~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 150 (519)
|++|+||.+.+. .+..++.+|...|+|+.|-+-| .+|++|+.|.+|+|||.++..+++++.+|...|..
T Consensus 159 ~sLDrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF 232 (794)
T ss_pred eeccccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence 589999999877 6788899999999999998844 69999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEeeCCCeEEEEecCCCCccccc
Q 010051 151 VAWDPLSKYVASLSSDRTCRIYANRPTKSKGVE 183 (519)
Q Consensus 151 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 183 (519)
+.|+|.-..+++|++||+++||...+.+.....
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 999999999999999999999998887654433
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.1e-28 Score=244.14 Aligned_cols=242 Identities=17% Similarity=0.260 Sum_probs=194.1
Q ss_pred CCCCEEEEEEecC-CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCc
Q 010051 12 DTKPVLTLDFHPI-SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETG 90 (519)
Q Consensus 12 h~~~V~~~~~sp~-~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~ 90 (519)
+...|.+++|+|. +.+||+++.||+|+|||+.+++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-------------------------------------------- 566 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-------------------------------------------- 566 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--------------------------------------------
Confidence 4467888999874 6788899899999999887553
Q ss_pred ccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEc-CCCCeEEEeeCCCe
Q 010051 91 QAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD-PLSKYVASLSSDRT 168 (519)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~ 168 (519)
.+..+.+|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.||.
T Consensus 567 ----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~ 641 (793)
T PLN00181 567 ----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHK 641 (793)
T ss_pred ----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCe
Confidence 3334456899999999997 7899999999999999999999888888765 678999995 57899999999999
Q ss_pred EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecc
Q 010051 169 CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~ 248 (519)
|++||++..+.. +.....|...|..+.|. ++.++++++.+
T Consensus 642 I~iwD~~~~~~~------------------------------~~~~~~h~~~V~~v~f~-~~~~lvs~s~D--------- 681 (793)
T PLN00181 642 VYYYDLRNPKLP------------------------------LCTMIGHSKTVSYVRFV-DSSTLVSSSTD--------- 681 (793)
T ss_pred EEEEECCCCCcc------------------------------ceEecCCCCCEEEEEEe-CCCEEEEEECC---------
Confidence 999999865310 01112456678899997 77888888777
Q ss_pred cceEEEEeccCC-----CcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE
Q 010051 249 INSAYIFSRKDL-----SRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA 323 (519)
Q Consensus 249 ~~~i~i~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 323 (519)
+.+++||+... ..++..+.+|...+..+.|+|++ .++++|+.|+.|++|+.....++.
T Consensus 682 -~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~----------------~~lasgs~D~~v~iw~~~~~~~~~ 744 (793)
T PLN00181 682 -NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD----------------GYIATGSETNEVFVYHKAFPMPVL 744 (793)
T ss_pred -CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC----------------CEEEEEeCCCEEEEEECCCCCceE
Confidence 69999998643 24566788999999999999988 668888999999999987655443
Q ss_pred EEe------------ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 324 ILA------------GLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 324 ~~~------------~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
.+. ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 745 s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 745 SYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 221 114567999999999999999999999999986
No 78
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.8e-27 Score=222.70 Aligned_cols=261 Identities=15% Similarity=0.161 Sum_probs=193.3
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
|-..|....+++|+..+++++.+.....|+...+.. .++.-..+...
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~--------------------------------v~~~~~~G~~~- 65 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA--------------------------------VLKHTDYGKLA- 65 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE--------------------------------EeeccccccCC-
Confidence 445677778888888888888888888887654321 11111111100
Q ss_pred cceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-------ceEEEecccccCeEEEEEcCCC-CeEEE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKG-------SVLQILDAHFHYVQGVAWDPLS-KYVAS 162 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~~ 162 (519)
.....+.+|.+.|++++|+| ++++|++|+.|++|++||+.++ ..+..+.+|...|.+++|+|++ ++|++
T Consensus 66 --~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 66 --SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred --CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 11234668999999999999 8899999999999999999765 3467789999999999999975 68999
Q ss_pred eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
++.|++|++||+.+++.. .....+...|.+++|+|+|.+|++++.+
T Consensus 144 gs~DgtVrIWDl~tg~~~-------------------------------~~l~~h~~~V~sla~spdG~lLatgs~D--- 189 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAV-------------------------------EVIKCHSDQITSLEWNLDGSLLCTTSKD--- 189 (493)
T ss_pred EeCCCEEEEEECCCCeEE-------------------------------EEEcCCCCceEEEEEECCCCEEEEecCC---
Confidence 999999999999875421 1112355679999999999999998877
Q ss_pred eeeecccceEEEEeccCCCcccccCCCCCCC-eEEEEEcCCcccccccCCCCcccccceEEEEEe----cCCeEEEEeCC
Q 010051 243 SSMSESINSAYIFSRKDLSRPALQLPGASKP-VVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA----TLNSLYIYDTE 317 (519)
Q Consensus 243 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~----~d~~i~vwd~~ 317 (519)
+.|++||.+.. ..+..+.+|... +..+.|.+++. .+++++ .|+.|++||++
T Consensus 190 -------g~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~----------------~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 190 -------KKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKD----------------LIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred -------CEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCC----------------eEEEEecCCCCCCeEEEEeCC
Confidence 69999999864 345566677654 45678888763 344433 47899999998
Q ss_pred CCC-ceEEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEecCCccc
Q 010051 318 SVP-PIAILAGLHYAAITDIAWSNNARYLALSS-QDGYCTLVEFENDELG 365 (519)
Q Consensus 318 ~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~ 365 (519)
+.. ++......+...+....|++++++|++++ .|+.|++||+.++...
T Consensus 246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 754 33333331334566778999999999887 4999999999987643
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.5e-28 Score=226.80 Aligned_cols=276 Identities=22% Similarity=0.308 Sum_probs=236.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc---------CCCeEEE
Q 010051 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP---------CGGELII 81 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~i~v 81 (519)
+|...+++..|+ +.++++++.+.+|++|+..++..+. ..+.+|.+.|.++++.. .|.++++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~--------~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL--------TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE--------eeccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 567889999999 6789999999999999999887543 23788999999999983 2789999
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
||+.++ .+...+.+|...|.++... ...+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.+++
T Consensus 276 Wd~~sg------~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 276 WDCSTG------ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred EecCCC------cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEE
Confidence 999988 8999999999999999876 5578889999999999999999999999999999999998 88999
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
+|+.|++|++||+.+++. +.....|...|+++.+.+. ..++.++-+
T Consensus 346 sgs~d~~v~VW~~~~~~c-------------------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-- 391 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKC-------------------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLD-- 391 (537)
T ss_pred EEecCceEEEEEhhhcee-------------------------------eeeecCCcceEEEEEecCc-ceEEeeeec--
Confidence 999999999999987652 1223357788999987766 788887766
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
..|++||+.+..+++..+.+|..-+..+.+.. +++++++.|+.|++||..++++
T Consensus 392 --------~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~------------------~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 392 --------TTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD------------------NFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred --------cceEeecCCchhhhhhhhcCCccccccccccc------------------ceeEeccccccEEEeecccCce
Confidence 68999999876578899999998886666644 6799999999999999999999
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCccccee
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPI 368 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~ 368 (519)
+.++.+.|...|+.+++. ...+++++.||.+++||+.++.....+
T Consensus 446 ~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999988556889888886 467888999999999999998765544
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.5e-28 Score=204.98 Aligned_cols=283 Identities=19% Similarity=0.257 Sum_probs=231.3
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
....++++...|..+.+++|+.|..+.++|...+
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---------------------------------------------- 251 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---------------------------------------------- 251 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchh----------------------------------------------
Confidence 3457888888888788899999988888887655
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
+.+..+.||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+
T Consensus 252 --q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 252 --QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred --hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 355667789999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
.|++++..... .......-.+++.+|+|||..+.+++.+ +.
T Consensus 330 sd~~~g~~lt~-----------------------------vs~~~s~v~~ts~~fHpDgLifgtgt~d----------~~ 370 (506)
T KOG0289|consen 330 SDISSGSQLTV-----------------------------VSDETSDVEYTSAAFHPDGLIFGTGTPD----------GV 370 (506)
T ss_pred EEccCCcEEEE-----------------------------EeeccccceeEEeeEcCCceEEeccCCC----------ce
Confidence 99998753211 1111223447799999999999998877 79
Q ss_pred EEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc
Q 010051 252 AYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA 331 (519)
Q Consensus 252 i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 331 (519)
+++||+.... ....+++|.++|..++|+.+| -++++++.|+.|++||++..+...++......
T Consensus 371 vkiwdlks~~-~~a~Fpght~~vk~i~FsENG----------------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 371 VKIWDLKSQT-NVAKFPGHTGPVKAISFSENG----------------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKK 433 (506)
T ss_pred EEEEEcCCcc-ccccCCCCCCceeEEEeccCc----------------eEEEEEecCCeEEEEEehhhcccceeeccccc
Confidence 9999998654 677899999999999999999 45777788889999999998888877763445
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
.+.++.|.+.|.+|+.++.|=.|++++-.+..+.+...+..| .+..+.+.|.....++++++.|..+
T Consensus 434 ~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~----sg~st~v~Fg~~aq~l~s~smd~~l 500 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH----SGLSTGVRFGEHAQYLASTSMDAIL 500 (506)
T ss_pred cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc----ccccceeeecccceEEeeccchhhe
Confidence 799999999999999998776666666555444433333333 3567888999999999999988764
No 81
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=5e-28 Score=197.38 Aligned_cols=276 Identities=18% Similarity=0.245 Sum_probs=211.6
Q ss_pred CCCCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-----
Q 010051 1 MKGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----- 75 (519)
Q Consensus 1 ~~~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 75 (519)
|.....++.......|.+|.|+|.++.|++++.||++++|++........+. |..++.+++|.++
T Consensus 1 ~~~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~----------~~~plL~c~F~d~~~~~~ 70 (323)
T KOG1036|consen 1 MSPNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK----------HGAPLLDCAFADESTIVT 70 (323)
T ss_pred CCccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee----------cCCceeeeeccCCceEEE
Confidence 4455667777778999999999999999999999999999998875544333 7778888888774
Q ss_pred ---CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEE
Q 010051 76 ---GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVA 152 (519)
Q Consensus 76 ---~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 152 (519)
+|.|+.+|+.++. ...+..|..+|.|+.+++-...+++|+.|++|++||.+.......+... ..|.++.
T Consensus 71 G~~dg~vr~~Dln~~~-------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~ 142 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGN-------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMD 142 (323)
T ss_pred eccCceEEEEEecCCc-------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEe
Confidence 7999999999873 3345569999999999998888999999999999999875555555433 4788877
Q ss_pred EcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 153 WDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 153 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
.. ++.|++|+.|..+.+||+++...... .....+...++++++-|++.-
T Consensus 143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q-----------------------------~reS~lkyqtR~v~~~pn~eG 191 (323)
T KOG1036|consen 143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQ-----------------------------RRESSLKYQTRCVALVPNGEG 191 (323)
T ss_pred cc--CCEEEEeecCceEEEEEcccccchhh-----------------------------hccccceeEEEEEEEecCCCc
Confidence 65 78899999999999999998653221 112234456889999998888
Q ss_pred EEEecCCcceeeeecccceEEEEeccC-CCcccccCCCC---------CCCeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKD-LSRPALQLPGA---------SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~---------~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
.++++-++.+. +..+|... .......+..| -.+|++++|+|-. ..+
T Consensus 192 y~~sSieGRVa--------vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~----------------~tf 247 (323)
T KOG1036|consen 192 YVVSSIEGRVA--------VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH----------------GTF 247 (323)
T ss_pred eEEEeecceEE--------EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc----------------ceE
Confidence 88888775432 12222220 01111222222 2479999999975 568
Q ss_pred EEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeC
Q 010051 303 FAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQ 350 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 350 (519)
++|+.||.|.+||+.+.+.+..+.. ....|..++|+.+|..||+++.
T Consensus 248 aTgGsDG~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 248 ATGGSDGIVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EecCCCceEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEEEec
Confidence 8888888999999999999999987 6678999999999999999874
No 82
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=191.91 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=213.9
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEe
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 173 (519)
+.+..+..+.++|..+.|+-||++.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEE
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAY 253 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~ 253 (519)
+.+++.. .....|.+.|+.+.|+.+...+++++-+ ..++
T Consensus 88 V~TGkv~-------------------------------Rr~rgH~aqVNtV~fNeesSVv~SgsfD----------~s~r 126 (307)
T KOG0316|consen 88 VNTGKVD-------------------------------RRFRGHLAQVNTVRFNEESSVVASGSFD----------SSVR 126 (307)
T ss_pred cccCeee-------------------------------eecccccceeeEEEecCcceEEEecccc----------ceeE
Confidence 9998732 2334677889999999999999998777 6999
Q ss_pred EEeccCCC-cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecccccc
Q 010051 254 IFSRKDLS-RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAA 332 (519)
Q Consensus 254 i~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 332 (519)
+||.+... .|++.+......|.++.... ..|++|+.||+++.||++.|....-..+ .+
T Consensus 127 ~wDCRS~s~ePiQildea~D~V~Si~v~~------------------heIvaGS~DGtvRtydiR~G~l~sDy~g---~p 185 (307)
T KOG0316|consen 127 LWDCRSRSFEPIQILDEAKDGVSSIDVAE------------------HEIVAGSVDGTVRTYDIRKGTLSSDYFG---HP 185 (307)
T ss_pred EEEcccCCCCccchhhhhcCceeEEEecc------------------cEEEeeccCCcEEEEEeecceeehhhcC---Cc
Confidence 99987654 67777777788899988876 4699999999999999999987766654 68
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCCCC
Q 010051 333 ITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKEPD 410 (519)
Q Consensus 333 i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~~~ 410 (519)
|++++|++|++.++.++.|+++++.|-.++++...+. ||.. .+--...+++.....+++++.|+.+ +|+..+..
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk--Ghkn--~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK--GHKN--MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc--cccc--ceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 9999999999999999999999999999998766654 4432 2333556777788889999988888 77766544
No 83
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1.4e-28 Score=213.21 Aligned_cols=280 Identities=17% Similarity=0.221 Sum_probs=226.9
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------CeE
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------GEL 79 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~i 79 (519)
...|.+-|.++..|...+++.||+. |.|+|||+.......-+. . .......+.++++.+.|++ .+|
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvs---q-Ldcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVS---Q-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccc---c-ccccCcccceeeeEecCCCceEEecccccee
Confidence 4578889999999999999999985 679999997553221111 1 1122245668888888886 466
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCe
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKY 159 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 159 (519)
.|||+..... .....+....-.+.+++.+||.+..+++..||.|.|||+.+...++.|.+|...+.||.++++|..
T Consensus 490 siWDLAapTp----rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk 565 (705)
T KOG0639|consen 490 SIWDLAAPTP----RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK 565 (705)
T ss_pred eeeeccCCCc----chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce
Confidence 7999986532 233444445556788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
|.||+-|.+||.||+++++.... ..+.+.|.++.++|.+.+++++-.+
T Consensus 566 lWTGGlDntvRcWDlregrqlqq--------------------------------hdF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQ--------------------------------HDFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred eecCCCccceeehhhhhhhhhhh--------------------------------hhhhhhheecccCCCccceeeeccc
Confidence 99999999999999998764221 2345678899999999999998776
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
+.+.+.... ......+.-|+..|.++.|.+.| +++++.+.|+-+..|.+.-|
T Consensus 614 ----------s~vevlh~s--kp~kyqlhlheScVLSlKFa~cG----------------kwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 614 ----------SNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCG----------------KWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ----------CcEEEEecC--CccceeecccccEEEEEEecccC----------------ceeeecCchhhhhhccCccc
Confidence 466666554 34456677899999999999998 67888888889999999988
Q ss_pred CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 320 PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
..+...+. ...|.++.+|.|.+|++||+.|....||.+
T Consensus 666 asiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 88777764 789999999999999999999999988876
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=194.35 Aligned_cols=256 Identities=21% Similarity=0.332 Sum_probs=201.2
Q ss_pred eccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEE--ecccccCeEEEEEcC-CCCeEEEeeCCCeEEEEe
Q 010051 97 KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQI--LDAHFHYVQGVAWDP-LSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 97 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 173 (519)
+.+++|...+.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45667999999999999999999999999999999988765543 478988999999987 467899999999999999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEE
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAY 253 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~ 253 (519)
.+.++....... ...-..+.|+|+|.+++++..+ ..|.
T Consensus 94 ~r~~k~~~~i~~--------------------------------~~eni~i~wsp~g~~~~~~~kd----------D~it 131 (313)
T KOG1407|consen 94 IRSGKCTARIET--------------------------------KGENINITWSPDGEYIAVGNKD----------DRIT 131 (313)
T ss_pred eccCcEEEEeec--------------------------------cCcceEEEEcCCCCEEEEecCc----------ccEE
Confidence 999874221111 1112268999999999998877 4677
Q ss_pred EEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccE
Q 010051 254 IFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAI 333 (519)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i 333 (519)
++|.++... ..-......++.+.|+.++ ++++...+.|+|.|......+++..+.. |....
T Consensus 132 ~id~r~~~~--~~~~~~~~e~ne~~w~~~n----------------d~Fflt~GlG~v~ILsypsLkpv~si~A-H~snC 192 (313)
T KOG1407|consen 132 FIDARTYKI--VNEEQFKFEVNEISWNNSN----------------DLFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNC 192 (313)
T ss_pred EEEecccce--eehhcccceeeeeeecCCC----------------CEEEEecCCceEEEEecccccccccccc-CCcce
Confidence 777764321 1122234467788888665 5677777789999999999999999999 99999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCCCCCccc
Q 010051 334 TDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKEPDKRK 413 (519)
Q Consensus 334 ~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~~~~~~ 413 (519)
.|+.|+|+|+|||+|+.|..+.+||++.. .+...++.+ .-+|..+.||.||++||+++.|..|-....+-..+.
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRl----dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDEL--ICERCISRL----DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHh--hhheeeccc----cCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 99999999999999999999999999754 333333332 368899999999999999999999965555555566
Q ss_pred cccccC
Q 010051 414 TEAETK 419 (519)
Q Consensus 414 ~~~~~~ 419 (519)
|+....
T Consensus 267 ~eI~~~ 272 (313)
T KOG1407|consen 267 WEIPCE 272 (313)
T ss_pred EEeecc
Confidence 665443
No 85
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=4.7e-27 Score=211.64 Aligned_cols=361 Identities=19% Similarity=0.237 Sum_probs=257.1
Q ss_pred eeEEecCCCCCEEEEEEecCCC---EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEE-------cc
Q 010051 5 TLQINWHDTKPVLTLDFHPISG---LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRF-------SP 74 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~ 74 (519)
......+|.++|+|+.|-|+.. ++++|+.|+.|.+|.+......+ ..++.+|...+.++.- ..
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~-------i~~~~g~~~~~~cv~a~~~~~~~~~ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIK-------IYTIQGHCKECVCVVARSSVMTCKA 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEE-------EEeecCcceeEEEEEeeeeEEEeec
Confidence 3456689999999999999887 89999999999999998433322 2223344444333221 13
Q ss_pred CCCeEEEEEcccCC--------------------------------------------CcccceeeeccccCCCCeEEEE
Q 010051 75 CGGELIIWKLHTTE--------------------------------------------TGQAWKVLKNLSFHRKDVLDLQ 110 (519)
Q Consensus 75 ~~~~i~vw~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~v~~~~ 110 (519)
.++.+.+|+.+..+ ....++....+.||.+.|.+++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 56777888773321 0113455667889999999999
Q ss_pred EcCCCC---EEEEEeCCCeEEEEEcCCCc---------------------eE----------EEecccccCeEEEEEcCC
Q 010051 111 WSTDGA---FLLSGSVDNSCIIWDVNKGS---------------------VL----------QILDAHFHYVQGVAWDPL 156 (519)
Q Consensus 111 ~s~~~~---~l~~~~~dg~i~vwd~~~~~---------------------~~----------~~~~~h~~~v~~~~~~~~ 156 (519)
|...+. +|++++.|..|++|.+.-+. .. ..+.+|...|.++.|+|.
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~ 278 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE 278 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc
Confidence 988544 78999999999999875321 11 112489999999999999
Q ss_pred CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEe
Q 010051 157 SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVP 236 (519)
Q Consensus 157 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 236 (519)
+..|++++.|.++.+|........ +.+...+ -.............|+|++..+++-
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGi------Wv~~vRl------------------Ge~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGI------WVDVVRL------------------GEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred hhhheecccCcceEEEecCCccce------EEEEEEe------------------ecccccccceeeEEEcCCCCEEEEe
Confidence 999999999999999987664211 1111111 1111223447789999999888886
Q ss_pred cCCcceeeeecccceEEEEeccCCC--cccccCCCCCCCeEEEEEcCCcccccccCCCCcccc-----------------
Q 010051 237 AGSYKISSMSESINSAYIFSRKDLS--RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKL----------------- 297 (519)
Q Consensus 237 ~~~~~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~----------------- 297 (519)
+.. +..++|...+.. .....+.||...|..+.|+|.|.+|++.+.|..-++
T Consensus 335 g~~----------Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 335 GRT----------GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ 404 (764)
T ss_pred ccc----------CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence 655 577788733221 334457799999999999999999888776544311
Q ss_pred --------------------------------------------------------------------------------
Q 010051 298 -------------------------------------------------------------------------------- 297 (519)
Q Consensus 298 -------------------------------------------------------------------------------- 297 (519)
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence
Q ss_pred ---------------------------------------------------cceEEEEEecC-----CeEEEEeCCCCCc
Q 010051 298 ---------------------------------------------------PYRLIFAIATL-----NSLYIYDTESVPP 321 (519)
Q Consensus 298 ---------------------------------------------------~~~~~~~~~~d-----~~i~vwd~~~~~~ 321 (519)
..+++++++.. ..|++|+..+...
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 00334444432 3588899888888
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCce
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
...+.+ |.-.|+.|+|||||+||++.+.|.++.+|......... .... ....+...|+.+.|+|++.++++++.|+.
T Consensus 565 ~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa-~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 565 VQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFA-CLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred hheecc-cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhc-cccccceEEEEcccCcccceeEEecCCce
Confidence 888888 99999999999999999999999999999986543211 1110 12234578999999999999999999998
Q ss_pred e-eecCCCC
Q 010051 402 V-TAETKEP 409 (519)
Q Consensus 402 i-~~~~~~~ 409 (519)
+ +|...+.
T Consensus 642 VkVW~~~~~ 650 (764)
T KOG1063|consen 642 VKVWEEPDL 650 (764)
T ss_pred EEEEeccCc
Confidence 8 7766554
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=210.54 Aligned_cols=271 Identities=16% Similarity=0.208 Sum_probs=218.8
Q ss_pred cCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 010051 63 HGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN 133 (519)
Q Consensus 63 ~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 133 (519)
..+.|.+++|+|. +-.+.||+..+. ...+.+......+.+++|..||++|++|...|.|+|+|+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~------~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR------SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh------hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 4577999999995 367889988766 4455555567889999999999999999999999999987
Q ss_pred CCceEEEecccccCeEEEEEcCCCC-eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceee
Q 010051 134 KGSVLQILDAHFHYVQGVAWDPLSK-YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF 212 (519)
Q Consensus 134 ~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (519)
+...++.+.+|+.+|..+.|+|.++ .|++|+.|+.+++||+.+... ..
T Consensus 99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-------------------------------~~ 147 (487)
T KOG0310|consen 99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-------------------------------QA 147 (487)
T ss_pred cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-------------------------------EE
Confidence 7778888999999999999998654 678888899999999987531 23
Q ss_pred ecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCC
Q 010051 213 HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSA 292 (519)
Q Consensus 213 ~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 292 (519)
....|..+|++.+|+|...+++++++- ++.|++||.+.....+.. ..|..+|..+.|-|.|..++++
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsY---------Dg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~iasA--- 214 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSY---------DGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLIASA--- 214 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCC---------CceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEEEEc---
Confidence 445788999999999987765554432 279999999876544444 3688999999999988544333
Q ss_pred CcccccceEEEEEecCCeEEEEeCCCCC-ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeec
Q 010051 293 GFFKLPYRLIFAIATLNSLYIYDTESVP-PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 293 g~~~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
..+.+++||+.+|. .+..+.. |...|||+++..++..|++++-|+.|++||+.+.+....+..
T Consensus 215 --------------gGn~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~- 278 (487)
T KOG0310|consen 215 --------------GGNSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY- 278 (487)
T ss_pred --------------CCCeEEEEEecCCceehhhhhc-ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-
Confidence 23579999999654 4455555 999999999999999999999999999999888776666654
Q ss_pred CCcccccCCCCcccccCCccEEEeecCCceeeec
Q 010051 372 GNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAE 405 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~ 405 (519)
.+++.+++.+||+..++.|..++.+...
T Consensus 279 ------~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 279 ------PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ------ccceeeEEecCCCceEEEecccceeeee
Confidence 4578899999999999999999988554
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=193.76 Aligned_cols=246 Identities=16% Similarity=0.246 Sum_probs=204.4
Q ss_pred CCCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC-----
Q 010051 2 KGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG----- 76 (519)
Q Consensus 2 ~~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 76 (519)
+|.-+-.+.+|.++|.+...+.+-.+.|+++.|-+-+|||.-+|..+..+. |...|..++|+.+.
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~----------hkhivk~~af~~ds~~llt 117 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE----------HKHIVKAVAFSQDSNYLLT 117 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh----------hhheeeeEEecccchhhhc
Confidence 355677889999999999999999899999999999999999999887654 88999999999883
Q ss_pred ----CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEE
Q 010051 77 ----GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVA 152 (519)
Q Consensus 77 ----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 152 (519)
.-++|+|++... .....+.+|.+.|..+.|....+.+++.+.|++|++||.+++..++++.. ..+|+++.
T Consensus 118 gg~ekllrvfdln~p~-----App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlE 191 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPK-----APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLE 191 (334)
T ss_pred cchHHHhhhhhccCCC-----CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCccee
Confidence 557899998764 45677889999999999999999999999999999999999999998875 47899999
Q ss_pred EcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 153 WDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 153 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
++++|++|.+ ...+.|.+||..+.... .....+..|.+.+++|+...
T Consensus 192 vs~dG~ilTi-a~gssV~Fwdaksf~~l--------------------------------Ks~k~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 192 VSQDGRILTI-AYGSSVKFWDAKSFGLL--------------------------------KSYKMPCNVESASLHPKKEF 238 (334)
T ss_pred eccCCCEEEE-ecCceeEEeccccccce--------------------------------eeccCccccccccccCCCce
Confidence 9999986654 45678999999876532 22234566889999999988
Q ss_pred EEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEE
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLY 312 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~ 312 (519)
+++++.+ ..++.||..+.........+|.++|.|+.|+|+| ...++|+.||+|+
T Consensus 239 fVaGged----------~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG----------------E~yAsGSEDGTir 292 (334)
T KOG0278|consen 239 FVAGGED----------FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG----------------ELYASGSEDGTIR 292 (334)
T ss_pred EEecCcc----------eEEEEEeccCCceeeecccCCCCceEEEEECCCC----------------ceeeccCCCceEE
Confidence 8887766 5888899877655444458999999999999999 5567778888999
Q ss_pred EEeCCCCCce
Q 010051 313 IYDTESVPPI 322 (519)
Q Consensus 313 vwd~~~~~~~ 322 (519)
+|.+..++..
T Consensus 293 lWQt~~~~~~ 302 (334)
T KOG0278|consen 293 LWQTTPGKTY 302 (334)
T ss_pred EEEecCCCch
Confidence 9998766543
No 88
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.6e-26 Score=215.78 Aligned_cols=245 Identities=15% Similarity=0.199 Sum_probs=178.3
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCc--------eEEEecccccC
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKGS--------VLQILDAHFHY 147 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~h~~~ 147 (519)
+.|.+|+.... ..+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.++. .+..+.+|...
T Consensus 54 gvI~L~~~~r~------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 54 GAIRLENQMRK------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred eEEEeeecCCC------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 56788887544 456778899999999999996 7899999999999999997642 33467889999
Q ss_pred eEEEEEcCCCCe-EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEE
Q 010051 148 VQGVAWDPLSKY-VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAW 226 (519)
Q Consensus 148 v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (519)
|.+++|+|++.. |++++.|++|++||+++++... .. .+...|.+++|
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-------------------------------~i-~~~~~V~Slsw 175 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-------------------------------QI-NMPKKLSSLKW 175 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-------------------------------EE-ecCCcEEEEEE
Confidence 999999998876 4789999999999998764210 00 12346889999
Q ss_pred ccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEE-----EcCCcccccccCCCCcccccceE
Q 010051 227 SPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVR-----FCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 227 sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~-----~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
+|+|.+|++++.+ +.+++||++.. ..+..+.+|.+.+.... |++++ .+
T Consensus 176 spdG~lLat~s~D----------~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~----------------~~ 228 (568)
T PTZ00420 176 NIKGNLLSGTCVG----------KHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDD----------------NY 228 (568)
T ss_pred CCCCCEEEEEecC----------CEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCC----------------CE
Confidence 9999999987766 68999999864 44566778887654433 34555 55
Q ss_pred EEEEecC----CeEEEEeCCC-CCceEEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcc
Q 010051 302 IFAIATL----NSLYIYDTES-VPPIAILAG-LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKV 375 (519)
Q Consensus 302 ~~~~~~d----~~i~vwd~~~-~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 375 (519)
+++++.+ +.|+|||+++ .+++..+.. .+.+.+......++|.++++|+.|+.|++|++..+.+ ..+....
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~---~~l~~~~- 304 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI---RKVNEYK- 304 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE---Eeecccc-
Confidence 6776665 3799999995 556655432 0223333444456689999999999999999986632 1222111
Q ss_pred cccCCCCcccccCCcc
Q 010051 376 SKDENKSPLVTKSEDM 391 (519)
Q Consensus 376 ~~~~~~~~~~~s~~~~ 391 (519)
.......++|.|+-.
T Consensus 305 -s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 305 -SCSPFRSFGFLPKQI 319 (568)
T ss_pred -cCCCccceEEccccc
Confidence 235566778888653
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1e-27 Score=205.77 Aligned_cols=256 Identities=19% Similarity=0.285 Sum_probs=201.4
Q ss_pred EEecCCCCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccc-cccccccccccCcceeEEEEccC---------
Q 010051 7 QINWHDTKPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIP-TASYQNSLSYHGSAINILRFSPC--------- 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--------- 75 (519)
.....|.+.|+.+.+-|... ++|+.+..+.|+|||...-....... ...+...|.+|...-+.++|++.
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 34577999999999999776 66778889999999997654333222 22345568889887778888775
Q ss_pred -CCeEEEEEcccCCC-cccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcC--CCceEEEecccccCeEE
Q 010051 76 -GGELIIWKLHTTET-GQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVN--KGSVLQILDAHFHYVQG 150 (519)
Q Consensus 76 -~~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~ 150 (519)
++.|++||+..... .........+.+|...|..++|++ +...|++++.|+.+.|||++ +.+......+|.+.|.|
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 79999999987654 233456677889999999999999 45678899999999999999 55666778899999999
Q ss_pred EEEcCC-CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC
Q 010051 151 VAWDPL-SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD 229 (519)
Q Consensus 151 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 229 (519)
++|+|- +..|||||.|++|.+||+|...
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------------------------------------------- 306 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLN--------------------------------------------------- 306 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcc---------------------------------------------------
Confidence 999985 5567899999999999998642
Q ss_pred CCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC
Q 010051 230 GSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN 309 (519)
Q Consensus 230 g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~ 309 (519)
.++..+.+|...|.++.|+|... ..+++++.|+
T Consensus 307 --------------------------------~~lh~~e~H~dev~~V~WSPh~e---------------tvLASSg~D~ 339 (422)
T KOG0264|consen 307 --------------------------------KPLHTFEGHEDEVFQVEWSPHNE---------------TVLASSGTDR 339 (422)
T ss_pred --------------------------------cCceeccCCCcceEEEEeCCCCC---------------ceeEecccCC
Confidence 23445677888899999999764 3477788889
Q ss_pred eEEEEeCCCC--------------CceEEEeccccccEEEEEEcCCCCE-EEEEeCCCcEEEEEecC
Q 010051 310 SLYIYDTESV--------------PPIAILAGLHYAAITDIAWSNNARY-LALSSQDGYCTLVEFEN 361 (519)
Q Consensus 310 ~i~vwd~~~~--------------~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~dg~i~vwd~~~ 361 (519)
.+.+||+..- +++.. .++|...|..+.|+|+..+ |++++.|+.+.||....
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~-HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFI-HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEE-ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999998642 12233 4449999999999999875 67789999999999864
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-27 Score=212.55 Aligned_cols=237 Identities=21% Similarity=0.305 Sum_probs=200.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-cccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-HFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKG 181 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 181 (519)
...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999988 99999999998 6789999999999999999865321
Q ss_pred cccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC
Q 010051 182 VEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS 261 (519)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 261 (519)
. ....|...|..+.|++|+.++++++.+ +.+.|||.. ..
T Consensus 295 ~------------------------------~~~~H~qeVCgLkws~d~~~lASGgnD----------N~~~Iwd~~-~~ 333 (484)
T KOG0305|consen 295 S------------------------------TLQGHRQEVCGLKWSPDGNQLASGGND----------NVVFIWDGL-SP 333 (484)
T ss_pred h------------------------------hhhcccceeeeeEECCCCCeeccCCCc----------cceEeccCC-Cc
Confidence 1 133567889999999999999998888 799999994 45
Q ss_pred cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe--cCCeEEEEeCCCCCceEEEeccccccEEEEEEc
Q 010051 262 RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA--TLNSLYIYDTESVPPIAILAGLHYAAITDIAWS 339 (519)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s 339 (519)
.+...+..|...|.+++|+|-... .|++|+ .|+.|++||..++..+..+.. ...|.+|.|+
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~---------------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Ws 396 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSG---------------LLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWS 396 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccC---------------ceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEc
Confidence 677888999999999999996543 355554 489999999999999988875 6789999999
Q ss_pred CCCCEEEEE--eCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eec
Q 010051 340 NNARYLALS--SQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAE 405 (519)
Q Consensus 340 ~~g~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~ 405 (519)
+..+-|+++ -.++.|.||++.+. .....+.+|. ..|..+++||||..+++++.|.++ +|.
T Consensus 397 k~~kEi~sthG~s~n~i~lw~~ps~--~~~~~l~gH~----~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 397 KKYKELLSTHGYSENQITLWKYPSM--KLVAELLGHT----SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCCEEEEecCCCCCcEEEEecccc--ceeeeecCCc----ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 998777764 35578999999874 3455566665 579999999999999999988777 444
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.2e-27 Score=223.99 Aligned_cols=281 Identities=19% Similarity=0.272 Sum_probs=214.3
Q ss_pred cCcceeEEEEccC-----------CCeEEEEEcccCCC------cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 010051 63 HGSAINILRFSPC-----------GGELIIWKLHTTET------GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDN 125 (519)
Q Consensus 63 ~~~~v~~~~~~~~-----------~~~i~vw~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 125 (519)
+...|.++..+|+ |+.+.||+...-.. ....+.+.....|.+.|+|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 3445777777777 34556998753210 111244556677999999999999999999999999
Q ss_pred eEEEEEcCC------------------CceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccc
Q 010051 126 SCIIWDVNK------------------GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187 (519)
Q Consensus 126 ~i~vwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (519)
.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.+|+.++.+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-------- 163 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-------- 163 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--------
Confidence 999999872 135677899999999999999999999999999999999988632
Q ss_pred eeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccC
Q 010051 188 VCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQL 267 (519)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 267 (519)
+.....|.+.|..+.|.|-|+|+++-+.| +.+++|...+++.. ..+
T Consensus 164 -----------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdD----------rtikvwrt~dw~i~-k~I 209 (942)
T KOG0973|consen 164 -----------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDD----------RTLKVWRTSDWGIE-KSI 209 (942)
T ss_pred -----------------------eeeeecccccccceEECCccCeeeeecCC----------ceEEEEEcccceee-Eee
Confidence 12233567889999999999999998877 79999997764321 111
Q ss_pred C------CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCC
Q 010051 268 P------GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNN 341 (519)
Q Consensus 268 ~------~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (519)
. .....+..+.|||||.+|++...-. +.-.++.|.+-.+.+.-..+.+ |..++.++.|+|.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n------------~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~ 276 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVN------------GGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPK 276 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhcc------------CCcceeEEEecCCceeeeeeec-CCCceEEEEeChH
Confidence 1 2234578899999999887654311 2224788999888888889999 9999999999982
Q ss_pred --------C-----C----EEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceee
Q 010051 342 --------A-----R----YLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVT 403 (519)
Q Consensus 342 --------g-----~----~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 403 (519)
| . .+|+|+.|++|.||..... .++.. ........|..+.|+|||..|.+++.|+.|.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~---RPl~v--i~~lf~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP---RPLFV--IHNLFNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCC---Cchhh--hhhhhcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 1 1 5789999999999998543 22211 1223457899999999999999999999883
No 92
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=6.1e-26 Score=197.08 Aligned_cols=357 Identities=14% Similarity=0.153 Sum_probs=237.8
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCC--------cEEEEEecCCccccccccc----------------------
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADY--------DIKIWLINSGEKQKKIPTA---------------------- 54 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg--------~i~iwd~~~~~~~~~~~~~---------------------- 54 (519)
..+...+|+..|.|++.+||.-.+|+|-..| .++|||..+-..+..+...
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4567789999999999999988888775544 5999995544433322100
Q ss_pred ---------------cccccccccCcceeEEEEccCC---------CeEEEEEcccCCCcccceeeecccc-CCCCeEEE
Q 010051 55 ---------------SYQNSLSYHGSAINILRFSPCG---------GELIIWKLHTTETGQAWKVLKNLSF-HRKDVLDL 109 (519)
Q Consensus 55 ---------------~~~~~~~~~~~~v~~~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 109 (519)
..........+.|....|.|.| +.+.+|+++.+... +....+.. ....|.|+
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~---k~~~~fek~ekk~Vl~v 252 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV---KRQGIFEKREKKFVLCV 252 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE---EEeeccccccceEEEEE
Confidence 0000111122333444455543 66777877665322 22222222 23679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccc--
Q 010051 110 QWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY-- 187 (519)
Q Consensus 110 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 187 (519)
+|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||- ..+......++.
T Consensus 253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~-~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDD-NYRKLRETELPEQF 329 (626)
T ss_pred EEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccc-cccccccccCchhc
Confidence 9999987 7899999999999998888777777999999999999888755 5999999999993 322222222222
Q ss_pred eeeEEEeccCcccccCCcc--------ccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccC
Q 010051 188 VCQHVITKAGQHSTDDSKS--------AKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKD 259 (519)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~ 259 (519)
...+.+.........+... ..........|......++.+|+...+++++.+ +.+.+|+-.
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd----------k~v~lW~~~- 398 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD----------KHVRLWNDH- 398 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc----------ceEEEccCC-
Confidence 2223332222221111111 011111223455577789999999999998887 689999822
Q ss_pred CCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEc
Q 010051 260 LSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWS 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s 339 (519)
+ ...-.....++.++.|+|.| . ++.|...|...+.|..+... .+++. ...+++.+.|+
T Consensus 399 --k-~~wt~~~~d~~~~~~fhpsg-~----------------va~Gt~~G~w~V~d~e~~~l-v~~~~-d~~~ls~v~ys 456 (626)
T KOG2106|consen 399 --K-LEWTKIIEDPAECADFHPSG-V----------------VAVGTATGRWFVLDTETQDL-VTIHT-DNEQLSVVRYS 456 (626)
T ss_pred --c-eeEEEEecCceeEeeccCcc-e----------------EEEeeccceEEEEeccccee-EEEEe-cCCceEEEEEc
Confidence 1 22222345688999999987 4 55666667889999998544 44444 37899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-ee
Q 010051 340 NNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TA 404 (519)
Q Consensus 340 ~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~ 404 (519)
|+|.+||.|+.|+.|+||.+...... +..-+.. ....++.+.||+|+++|.+-+-|--+ .|
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRK--YSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcE--EEEeeee--cCceeEEeeecCCCceEEeccCceEEEEE
Confidence 99999999999999999999876432 2222222 12688999999999999998877766 55
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.5e-26 Score=175.82 Aligned_cols=297 Identities=21% Similarity=0.287 Sum_probs=220.2
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccc------cccccccccccccccCcceeEEEEccCC-------
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQ------KKIPTASYQNSLSYHGSAINILRFSPCG------- 76 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 76 (519)
...+.+|.+++|+|.|.+.|+|+...+.+|.....-..+ ...+.......-..|.+.|+|.+|+|.+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 456789999999999999999999999998854322211 1111111223345688999999999984
Q ss_pred --CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC----CCEEEEEeC-CCeEEEEEcCCCceEEEecccccCeE
Q 010051 77 --GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD----GAFLLSGSV-DNSCIIWDVNKGSVLQILDAHFHYVQ 149 (519)
Q Consensus 77 --~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~ 149 (519)
.+|++.-.+....... -.-..+.-|.+.|..++|..+ |..|++++. |..|++-|-.+|+..+.+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEeccccccccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 6677655443211100 112234558999999999653 456777654 78899999999999999999999998
Q ss_pred EEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC
Q 010051 150 GVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD 229 (519)
Q Consensus 150 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 229 (519)
++. +-++-.|++|+.|.+|++||++-.... ..+... .....-..+.|..++..|.
T Consensus 188 aly-swn~~m~~sgsqdktirfwdlrv~~~v----------~~l~~~--------------~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 188 ALY-SWNGAMFASGSQDKTIRFWDLRVNSCV----------NTLDND--------------FHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred EEE-EecCcEEEccCCCceEEEEeeecccee----------eeccCc--------------ccCCCcccceeEEEEECCC
Confidence 764 335789999999999999999875421 111100 0001112366889999999
Q ss_pred CCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC
Q 010051 230 GSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN 309 (519)
Q Consensus 230 g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~ 309 (519)
|+.|+++..+ ....+||++. ++++..+..|...|.++.|+|.. .++++++.|.
T Consensus 243 grll~sg~~d----------ssc~lydirg-~r~iq~f~phsadir~vrfsp~a----------------~yllt~syd~ 295 (350)
T KOG0641|consen 243 GRLLASGHAD----------SSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA----------------HYLLTCSYDM 295 (350)
T ss_pred cceeeeccCC----------CceEEEEeeC-CceeeeeCCCccceeEEEeCCCc----------------eEEEEecccc
Confidence 9999998776 6889999974 57788899999999999999987 6688899999
Q ss_pred eEEEEeCCCC---C-ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 310 SLYIYDTESV---P-PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 310 ~i~vwd~~~~---~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.|++-|++.. + ++..... |...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdla~el~~~vv~e-hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAE-HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEEEEe-ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999998742 2 2334444 88999999999999889999999999999764
No 94
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.7e-26 Score=214.72 Aligned_cols=243 Identities=14% Similarity=0.213 Sum_probs=174.5
Q ss_pred eeEEecCCCCCEEEEEEecC-CCEEEEEcCCCcEEEEEecCCccc-cccccccccccccccCcceeEEEEccCCCeEEEE
Q 010051 5 TLQINWHDTKPVLTLDFHPI-SGLLATGGADYDIKIWLINSGEKQ-KKIPTASYQNSLSYHGSAINILRFSPCGGELIIW 82 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~-~~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw 82 (519)
.+..+.+|.+.|++++|+|+ +.+||+|+.|++|+|||+.++... ..+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i------------------------------- 114 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI------------------------------- 114 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc-------------------------------
Confidence 34556789999999999997 789999999999999999764311 000
Q ss_pred EcccCCCcccceeeeccccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAF-LLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
. ..+..+.+|...|.+++|+|++.. |++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|+
T Consensus 115 --~--------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLa 183 (568)
T PTZ00420 115 --K--------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLS 183 (568)
T ss_pred --c--------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEE
Confidence 0 123345678999999999999875 5789999999999999998777775 557899999999999999
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcc-----eeeEEEEccCCCeEEEe
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPS-----FFRRLAWSPDGSFLLVP 236 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~sp~g~~l~~~ 236 (519)
+++.|+.|++||+++++.... + ..|.+ .+....|++++.+|+++
T Consensus 184 t~s~D~~IrIwD~Rsg~~i~t----------l---------------------~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 184 GTCVGKHMHIIDPRKQEIASS----------F---------------------HIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred EEecCCEEEEEECCCCcEEEE----------E---------------------ecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 999999999999998653110 0 01111 12234567899999887
Q ss_pred cCCcceeeeecccceEEEEeccCCCcccccCC--CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEE
Q 010051 237 AGSYKISSMSESINSAYIFSRKDLSRPALQLP--GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIY 314 (519)
Q Consensus 237 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vw 314 (519)
+.+. ...+.+++||++....++.... .+.+.+......++| .++++|..|+.|++|
T Consensus 233 G~d~------~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg----------------~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 233 GFSK------NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG----------------LIYLIGKGDGNCRYY 290 (568)
T ss_pred EcCC------CCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC----------------CEEEEEECCCeEEEE
Confidence 7552 1224799999987655554432 222333333333444 567888999999999
Q ss_pred eCCCCCceEEEeccccccEEEEEEcCCC
Q 010051 315 DTESVPPIAILAGLHYAAITDIAWSNNA 342 (519)
Q Consensus 315 d~~~~~~~~~~~~~~~~~i~~~~~s~~g 342 (519)
++..+.....-...+..++..++|.|..
T Consensus 291 e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 291 QHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EccCCcEEeecccccCCCccceEEcccc
Confidence 9987643222222256778899999974
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-27 Score=186.41 Aligned_cols=259 Identities=23% Similarity=0.272 Sum_probs=201.3
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcc
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~ 85 (519)
.++...|.+.|..+...-.|++|||+++|++|+|+.+......
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------------------------- 46 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------------------------- 46 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-------------------------------------
Confidence 3566789999999988888999999999999999998755421
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCce--EEEecccccCeEEEEEcCC--CCe
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWST--DGAFLLSGSVDNSCIIWDVNKGSV--LQILDAHFHYVQGVAWDPL--SKY 159 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~--~~~ 159 (519)
+.+..|.+|.++|+.++|.. -|.+||+++.||.|.||.-.+|+. ......|...|++++|.|. |-.
T Consensus 47 --------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 47 --------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred --------eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceE
Confidence 46677888999999999976 799999999999999999888753 3455789999999999986 557
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC---C------
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD---G------ 230 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~---g------ 230 (519)
|++++.||.|.+.+.+....-... .....|.-.+++++|.|. |
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~----------------------------ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTS----------------------------KIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccch----------------------------hhhhccccccceeeecCcCCCccccccC
Confidence 899999999999998875211000 111234456778888886 4
Q ss_pred -----CeEEEecCCcceeeeecccceEEEEeccCCC-cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEE
Q 010051 231 -----SFLLVPAGSYKISSMSESINSAYIFSRKDLS-RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA 304 (519)
Q Consensus 231 -----~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~ 304 (519)
+.|++++.+ +.++||...+.. ..-..+.+|...|..++|+|.-. ++..++++
T Consensus 171 ~~~~~krlvSgGcD----------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g------------l~~s~iAS 228 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCD----------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG------------LPKSTIAS 228 (299)
T ss_pred cccccceeeccCCc----------cceeeeecCCcchhhhhhhhhcchhhhhhhhccccC------------CCceeeEE
Confidence 457776666 799999987643 23344889999999999999642 23367999
Q ss_pred EecCCeEEEEeCCCC--Cce-EEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 305 IATLNSLYIYDTESV--PPI-AILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 305 ~~~d~~i~vwd~~~~--~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
++.||++.||..... .-. ..+.. ....+..+.||..|++|++++.|+.|.+|.=+
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCCCcEEEEEecCccCccccccccc-CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999999999986621 111 22222 45689999999999999999999999999754
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.4e-28 Score=204.57 Aligned_cols=275 Identities=15% Similarity=0.166 Sum_probs=218.5
Q ss_pred ccccccCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010051 58 NSLSYHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128 (519)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 128 (519)
..+..|.+.+..+.|.++ |..|++|+..... ...+..+.+..++|+.+.|.+++.++++++.|+.++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch----hhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 346789999999999987 4779999987653 257788889999999999999999999999999999
Q ss_pred EEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCcccc
Q 010051 129 IWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAK 208 (519)
Q Consensus 129 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
+|++...+...++.+|...|+++.|......+++|+.|.+|++||+...........
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----------------------- 301 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----------------------- 301 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----------------------
Confidence 999999999999999999999999987766799999999999999987542211111
Q ss_pred ceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccc
Q 010051 209 NHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRE 288 (519)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 288 (519)
.+.+..+..+ ...++++.-+ ..|++||.+.. .+....+.+ +.|+++..++++
T Consensus 302 ---------~S~cnDI~~~--~~~~~SgH~D----------kkvRfwD~Rs~-~~~~sv~~g-g~vtSl~ls~~g----- 353 (459)
T KOG0288|consen 302 ---------GSQCNDIVCS--ISDVISGHFD----------KKVRFWDIRSA-DKTRSVPLG-GRVTSLDLSMDG----- 353 (459)
T ss_pred ---------cccccceEec--ceeeeecccc----------cceEEEeccCC-ceeeEeecC-cceeeEeeccCC-----
Confidence 1122233333 2333333333 68999998754 334444444 489999999998
Q ss_pred cCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc---ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCccc
Q 010051 289 SNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL---HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELG 365 (519)
Q Consensus 289 ~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~ 365 (519)
..+++++.|.++.+.|+++.+....+... .....+.+.|||++.|+++|+.||.|+||++.++++.
T Consensus 354 -----------~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 354 -----------LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred -----------eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 56777888899999999998887776541 1245889999999999999999999999999999887
Q ss_pred ceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 366 IPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
..+...... ..++++.|+|.|..|++++.++.+
T Consensus 423 ~~l~~s~s~----~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 423 KVLSLSTSN----AAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEeccCCCC----cceEEEEEcCCCchhhcccCCcce
Confidence 776655443 379999999999999999988766
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-26 Score=196.98 Aligned_cols=282 Identities=18% Similarity=0.259 Sum_probs=217.7
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC----------CeEEEE
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG----------GELIIW 82 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~i~vw 82 (519)
.+.|+++.|+|..++|++|+.|++++||.+...... .++.+.....+|.+..|.|+| ..++.|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------hheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 478999999999999999999999999998754332 223344456677777787776 456789
Q ss_pred EcccCCCcccceeeeccccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 83 KLHTTETGQAWKVLKNLSFHR-KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
|+.+.+. ..+..+.++. ..+.....++++++|+..+..|.|.+....+++.+..++- .+.|..++|+.+++.|+
T Consensus 286 Dle~ak~----~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 286 DLETAKV----TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELL 360 (514)
T ss_pred ecccccc----ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEE
Confidence 9987643 2334444443 4567788999999999999999999999999999888874 47899999999999999
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
.++.+|.|.+||++... |.+.+...+. -.-++++.+++|.++|+|+..
T Consensus 361 ~~~~~GeV~v~nl~~~~----------~~~rf~D~G~--------------------v~gts~~~S~ng~ylA~GS~~-- 408 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNS----------CLHRFVDDGS--------------------VHGTSLCISLNGSYLATGSDS-- 408 (514)
T ss_pred EEcCCceEEEEecCCcc----------eEEEEeecCc--------------------cceeeeeecCCCceEEeccCc--
Confidence 99999999999999864 3333222211 122478889999999998887
Q ss_pred eeeeecccceEEEEeccC-----CCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 242 ISSMSESINSAYIFSRKD-----LSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
|.|.|||... ..+|+..+......|+.+.|+|+.+.||.++. ...+.+++-.+
T Consensus 409 --------GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~--------------~~knalrLVHv 466 (514)
T KOG2055|consen 409 --------GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR--------------VKKNALRLVHV 466 (514)
T ss_pred --------ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh--------------ccccceEEEec
Confidence 6888998543 23566777777789999999999988764333 33467888888
Q ss_pred CCCCceEEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 317 ESVPPIAILAGL--HYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 317 ~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.+......++.. .-+.|+||+|||.|.+||.|..+|.+.+|.+.
T Consensus 467 PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 467 PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 776666555441 23579999999999999999999999999874
No 98
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=7.1e-26 Score=208.32 Aligned_cols=296 Identities=17% Similarity=0.205 Sum_probs=225.8
Q ss_pred CeeEEecCCC-CCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccc---------------------------
Q 010051 4 GTLQINWHDT-KPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTA--------------------------- 54 (519)
Q Consensus 4 ~~~~~~~~h~-~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~--------------------------- 54 (519)
+.+...+.|. ++|++++|.-||+ +||+|+..|.+.+||++..+....+...
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 3444556664 9999999999997 6778888899999999876654432211
Q ss_pred -----------cccccccccCcceeEEEEccC------------------------------------------------
Q 010051 55 -----------SYQNSLSYHGSAINILRFSPC------------------------------------------------ 75 (519)
Q Consensus 55 -----------~~~~~~~~~~~~v~~~~~~~~------------------------------------------------ 75 (519)
.....-.+|..+..++.|...
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 011122356666666666522
Q ss_pred ---------------------------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010051 76 ---------------------------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128 (519)
Q Consensus 76 ---------------------------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 128 (519)
+...+.|+.+....+...-....++.....+++++.++.|++.+.|+..|.|-
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 03344566654433221111222222346789999999999999999999999
Q ss_pred EEEcCCCceEEEe---cccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCc
Q 010051 129 IWDVNKGSVLQIL---DAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSK 205 (519)
Q Consensus 129 vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
+|++.+|-....+ ..|..+|++++....++.+++++.+|.+++||........
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~------------------------ 529 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK------------------------ 529 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee------------------------
Confidence 9999999888888 5899999999999889999999999999999998764211
Q ss_pred cccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCccc
Q 010051 206 SAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFN 285 (519)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 285 (519)
.......+..+.++.....++++..+ -.|.++|..+ .+.++.+.+|...|+++.|||||
T Consensus 530 --------~l~l~~~~~~iv~hr~s~l~a~~~dd----------f~I~vvD~~t-~kvvR~f~gh~nritd~~FS~Dg-- 588 (910)
T KOG1539|consen 530 --------SLRLGSSITGIVYHRVSDLLAIALDD----------FSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDG-- 588 (910)
T ss_pred --------eeccCCCcceeeeeehhhhhhhhcCc----------eeEEEEEchh-hhhhHHhhccccceeeeEeCCCC--
Confidence 11234556678888888888877766 4889999864 35677899999999999999999
Q ss_pred ccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC-CcEEEEEec
Q 010051 286 LRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD-GYCTLVEFE 360 (519)
Q Consensus 286 l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vwd~~ 360 (519)
+++++++.|++|++||+.++.++-.+.- ..+++++.|||+|.+|||+..| .-|++|.-.
T Consensus 589 --------------rWlisasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 589 --------------RWLISASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred --------------cEEEEeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 7789999999999999999999988875 7889999999999999999999 669999743
No 99
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.6e-26 Score=192.42 Aligned_cols=255 Identities=23% Similarity=0.378 Sum_probs=206.6
Q ss_pred CCCeeEEecCCCCCEEEEEEecCCC---EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---
Q 010051 2 KGGTLQINWHDTKPVLTLDFHPISG---LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--- 75 (519)
Q Consensus 2 ~~~~~~~~~~h~~~V~~~~~sp~~~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 75 (519)
+|+...+..||+++|.+++|.--.. .|++++.|.++++|.++.++.... ......+|...|.++...++
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-----~~~~~~GHk~~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-----ALKVCRGHKRSVDSVSVDSSGTR 207 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh-----HHhHhcccccceeEEEecCCCCe
Confidence 6788899999999999998854333 699999999999999988765433 22334589999999998887
Q ss_pred ------CCeEEEEEcccCC-------------------CcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 010051 76 ------GGELIIWKLHTTE-------------------TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIW 130 (519)
Q Consensus 76 ------~~~i~vw~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 130 (519)
|..|.||+..... .......+..+.||+.+|.++.|++ ...+++++.|.+|+.|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVW 286 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEE
Confidence 5889999932210 1112234566889999999999987 6789999999999999
Q ss_pred EcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccce
Q 010051 131 DVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNH 210 (519)
Q Consensus 131 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (519)
|+.++..+..+.+. ..+.++.++|..++|++|+.|..|++||.+++.. ...
T Consensus 287 Dletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g----------------------------s~v 337 (423)
T KOG0313|consen 287 DLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG----------------------------SVV 337 (423)
T ss_pred EeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC----------------------------cee
Confidence 99999998888764 6789999999999999999999999999998742 122
Q ss_pred eeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccC
Q 010051 211 LFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESN 290 (519)
Q Consensus 211 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 290 (519)
......|...|.++.|+|...++++.+.. ++.+++||++....++..+.+|...|.++.|...
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~---------D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-------- 400 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSY---------DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-------- 400 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEec---------CCeEEEEEeccCCCcceeeccCCceEEEEeccCC--------
Confidence 23344677899999999988776665433 2799999999988899999999999999999875
Q ss_pred CCCcccccceEEEEEecCCeEEEEeCC
Q 010051 291 SAGFFKLPYRLIFAIATLNSLYIYDTE 317 (519)
Q Consensus 291 ~~g~~~~~~~~~~~~~~d~~i~vwd~~ 317 (519)
..|++|+.|++|+++...
T Consensus 401 ---------~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 ---------GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ---------ceEEeccCcceEEEeccc
Confidence 368999999999998743
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.1e-27 Score=215.26 Aligned_cols=250 Identities=18% Similarity=0.275 Sum_probs=191.8
Q ss_pred eeeccc-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------------------------------C------
Q 010051 95 VLKNLS-FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK--------------------------------G------ 135 (519)
Q Consensus 95 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------------------------~------ 135 (519)
..+.+. .|.+.|+++.||+||+|||+|+.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344555 7999999999999999999999999999998754 0
Q ss_pred ----------------------ceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEE
Q 010051 136 ----------------------SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVI 193 (519)
Q Consensus 136 ----------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 193 (519)
++++.+.+|.+.|..+.|+. .++|++++.|.++++|++.... |..+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~----------CL~~- 405 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKE----------CLKV- 405 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcc----------eeeE-
Confidence 11234568999999999996 5789999999999999998654 3222
Q ss_pred eccCcccccCCccccceeeecCCCcceeeEEEEcc-CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCC
Q 010051 194 TKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASK 272 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 272 (519)
..|..+|+|++|+| |.+|+++|+-+ +.++||++.+ ..+.....-..
T Consensus 406 ---------------------F~HndfVTcVaFnPvDDryFiSGSLD----------~KvRiWsI~d--~~Vv~W~Dl~~ 452 (712)
T KOG0283|consen 406 ---------------------FSHNDFVTCVAFNPVDDRYFISGSLD----------GKVRLWSISD--KKVVDWNDLRD 452 (712)
T ss_pred ---------------------EecCCeeEEEEecccCCCcEeecccc----------cceEEeecCc--CeeEeehhhhh
Confidence 35788999999999 78899998888 6888888864 23334444457
Q ss_pred CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc-c------cccEEEEEEcCCCC-E
Q 010051 273 PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL-H------YAAITDIAWSNNAR-Y 344 (519)
Q Consensus 273 ~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~------~~~i~~~~~s~~g~-~ 344 (519)
-|++++|+|+| +..+.|+.+|.+++|+....+......-. | ...|+.+.|.|... .
T Consensus 453 lITAvcy~PdG----------------k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 453 LITAVCYSPDG----------------KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred hheeEEeccCC----------------ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 89999999999 56788888889999999877765544321 1 23799999997543 4
Q ss_pred EEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCCC
Q 010051 345 LALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKEP 409 (519)
Q Consensus 345 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~~ 409 (519)
+++.+.|..|||+|.....+...+ .|... ...-....|+.||++|+++++|.-| +|.....
T Consensus 517 vLVTSnDSrIRI~d~~~~~lv~Kf--KG~~n--~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRDKDLVHKF--KGFRN--TSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEEecCCCceEEEeccchhhhhhh--ccccc--CCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 667788999999999776554443 33332 2334567889999999999998888 7876443
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-25 Score=183.55 Aligned_cols=274 Identities=18% Similarity=0.278 Sum_probs=199.8
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
.+..+|.+-|.++.|.+.|+.+|+|+.|++|+|||......
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~--------------------------------------- 47 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG--------------------------------------- 47 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---------------------------------------
Confidence 35578999999999999999999999999999999754321
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCC---------CceEEEecccccCeEEEEEcC
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWST--DGAFLLSGSVDNSCIIWDVNK---------GSVLQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~ 155 (519)
.|.+......|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. .....++......|+.+.|.|
T Consensus 48 -----~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP 122 (361)
T KOG2445|consen 48 -----TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP 122 (361)
T ss_pred -----ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc
Confidence 1234444556899999999966 589999999999999998521 123455666778999999998
Q ss_pred C--CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC---C
Q 010051 156 L--SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD---G 230 (519)
Q Consensus 156 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~---g 230 (519)
. |-.|++++.||.+|||+.-..-......+.......+ .....+.....|+.|+|. .
T Consensus 123 ~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~------------------~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 123 KHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI------------------DPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred hhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc------------------CCcccccCcceEEeeccccccC
Confidence 5 6678999999999999876543222111111111000 011123344568999974 4
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCC---cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLS---RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
.+|++++.+. ....+.++||...... ..+..+.+|..+|+.++|.|.-.. ++..+++++.
T Consensus 185 p~iAvgs~e~-----a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr------------~y~~lAvA~k 247 (361)
T KOG2445|consen 185 PLIAVGSDED-----APHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR------------SYHLLAVATK 247 (361)
T ss_pred ceEEEEcccC-----CccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC------------ceeeEEEeec
Confidence 6778776542 2334678888776554 234567899999999999996321 3377899999
Q ss_pred CCeEEEEeCCCC--------------------CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 308 LNSLYIYDTESV--------------------PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 308 d~~i~vwd~~~~--------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
|| |+||++... +.+..+.+ |.+.|..+.|+-.|..|++.+.||+||+|...-
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~-H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD-HNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC-CCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 999998731 12334555 999999999999999999999999999998653
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8e-26 Score=210.35 Aligned_cols=288 Identities=21% Similarity=0.285 Sum_probs=217.5
Q ss_pred CCCCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCC-ccccccccccccccccccCcceeEEE-------E
Q 010051 1 MKGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSG-EKQKKIPTASYQNSLSYHGSAINILR-------F 72 (519)
Q Consensus 1 ~~~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-------~ 72 (519)
|....+.+.+.|+..-+.|+|.|+|.+|++++.||.|++|+.... +....+. .+...|.+++ .
T Consensus 1 M~~~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---------~~g~~v~~ia~~s~~f~~ 71 (933)
T KOG1274|consen 1 MSSTRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---------ISGELVSSIACYSNHFLT 71 (933)
T ss_pred CCcccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---------ccCceeEEEeecccceEE
Confidence 667778888999999999999999999999999999999998766 3333322 1444444444 4
Q ss_pred ccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEE
Q 010051 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVA 152 (519)
Q Consensus 73 ~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 152 (519)
+..+++|.+|....+... ..+...+-++++++|+-+|+++|.|+.|-.|++.++.+......+++|.++|.++.
T Consensus 72 ~s~~~tv~~y~fps~~~~------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEED------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred eeccceEEEeeCCCCCcc------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 455799999999877432 23333567899999999999999999999999999999998999999999999999
Q ss_pred EcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 153 WDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 153 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
|+|++++||+.+-||.|++|++..+........-..+.. ......+..++|+|+|..
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-----------------------~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-----------------------FILSRICTRLAWHPKGGT 202 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-----------------------ccccceeeeeeecCCCCe
Confidence 999999999999999999999998754322211111100 011344668999999777
Q ss_pred EEEecCCcceeeeecccceEEEEeccCCCcccccCC-CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeE
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLP-GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSL 311 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i 311 (519)
+++.+.+ +.|.+|+...+........ .+...+.+++|+|.|+ +|++++.+|.|
T Consensus 203 la~~~~d----------~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~----------------YiAAs~~~g~I 256 (933)
T KOG1274|consen 203 LAVPPVD----------NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK----------------YIAASTLDGQI 256 (933)
T ss_pred EEeeccC----------CeEEEEccCCceeheeecccccccceEEEEEcCCCc----------------EEeeeccCCcE
Confidence 7776665 6899999887765443333 3344599999999994 56677777799
Q ss_pred EEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010051 312 YIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLV 357 (519)
Q Consensus 312 ~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 357 (519)
.|||.++.+. +. ....|++++|.|+...|-.-..-|...+|
T Consensus 257 ~vWnv~t~~~----~~-~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 257 LVWNVDTHER----HE-FKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEecccchh----cc-ccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999998333 22 34679999999998876555555554444
No 103
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.7e-26 Score=204.65 Aligned_cols=281 Identities=20% Similarity=0.297 Sum_probs=215.4
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG--------- 76 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 76 (519)
..+..+|++.|.||+..|.|.+||+|+.||+|+||.+.+|.+++++.. .+.|.+|+|+|..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----------d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----------DSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----------cceeEEEEecCCCCceeEEEEe
Confidence 356679999999999999999999999999999999999999987753 4467777777762
Q ss_pred -CeE---------------------------------EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEe
Q 010051 77 -GEL---------------------------------IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGS 122 (519)
Q Consensus 77 -~~i---------------------------------~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 122 (519)
..+ ..|.-....... .-+.....|...|..+.|+..|.||++..
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~--~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELE--KGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhc--cceEEEEecCCccceeeeecCCceEEEec
Confidence 222 233322111100 01222334888999999999999999886
Q ss_pred CC---CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcc
Q 010051 123 VD---NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQH 199 (519)
Q Consensus 123 ~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (519)
.+ ..|.|.++.......-|.-..+.|.++.|+|...+|++++ ...|++||+.......
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvK------------------ 601 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVK------------------ 601 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHH------------------
Confidence 54 4799999987766656655668899999999999998887 4679999997643111
Q ss_pred cccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEE
Q 010051 200 STDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRF 279 (519)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~ 279 (519)
...+....|.+++.+|.|..|++++.+ +.+..||+.-..++...+.-|...+++++|
T Consensus 602 -------------kL~tg~kwiS~msihp~GDnli~gs~d----------~k~~WfDldlsskPyk~lr~H~~avr~Va~ 658 (733)
T KOG0650|consen 602 -------------KLLTGSKWISSMSIHPNGDNLILGSYD----------KKMCWFDLDLSSKPYKTLRLHEKAVRSVAF 658 (733)
T ss_pred -------------HHhcCCeeeeeeeecCCCCeEEEecCC----------CeeEEEEcccCcchhHHhhhhhhhhhhhhh
Confidence 111223567799999999999998877 688899998888899999999999999999
Q ss_pred cCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC------CC---CceEEEecccccc----EEEEEEcCCCCEEE
Q 010051 280 CPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE------SV---PPIAILAGLHYAA----ITDIAWSNNARYLA 346 (519)
Q Consensus 280 sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~------~~---~~~~~~~~~~~~~----i~~~~~s~~g~~l~ 346 (519)
++.- .++++|+.||++.||... .. -++..+.+ |... |.++.|+|...+|+
T Consensus 659 H~ry----------------PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g-H~~~~~~gVLd~~wHP~qpWLf 721 (733)
T KOG0650|consen 659 HKRY----------------PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG-HEKTNDLGVLDTIWHPRQPWLF 721 (733)
T ss_pred cccc----------------ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC-ceeecccceEeecccCCCceEE
Confidence 9976 556667777788877532 12 24456667 7655 88999999999999
Q ss_pred EEeCCCcEEEE
Q 010051 347 LSSQDGYCTLV 357 (519)
Q Consensus 347 ~~~~dg~i~vw 357 (519)
+++.||+|++|
T Consensus 722 sAGAd~tirlf 732 (733)
T KOG0650|consen 722 SAGADGTIRLF 732 (733)
T ss_pred ecCCCceEEee
Confidence 99999999998
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=187.38 Aligned_cols=288 Identities=17% Similarity=0.249 Sum_probs=227.4
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CC
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GG 77 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~ 77 (519)
+.+.||.+.|..++.....+.+.+++.|.+.+||.+++|.++.. ..+|.+.|+++.|++. |+
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---------Y~GH~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---------YTGHTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---------ecccccceeeEEeccccceEEEccCCc
Confidence 45679999999999998889999999999999999999997654 6789999999999987 45
Q ss_pred eEEEEE------cccCC---------------------------C-cccceeeeccccCCCCeEEEEEcCCCCEEEEEeC
Q 010051 78 ELIIWK------LHTTE---------------------------T-GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV 123 (519)
Q Consensus 78 ~i~vw~------~~~~~---------------------------~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 123 (519)
+-.||. +.... . ...-..+..+++|...|.+..|-..|+.+++++.
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 666775 21100 0 0112345678899999999999999999999999
Q ss_pred CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccC
Q 010051 124 DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDD 203 (519)
Q Consensus 124 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
|.+..+||+++|..+..+.+|....+.++-+|..+++++.+.|-+.++||++..-.
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~------------------------ 348 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ------------------------ 348 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc------------------------
Confidence 99999999999999999999999999999999999999999999999999985311
Q ss_pred CccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCc
Q 010051 204 SKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLA 283 (519)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 283 (519)
.+.-...|...|+++.|..+. .+++++.+ ..+++||+++...++.++. ...+++.++.+..+
T Consensus 349 ------sV~VFQGHtdtVTS~vF~~dd-~vVSgSDD----------rTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~ 410 (481)
T KOG0300|consen 349 ------SVAVFQGHTDTVTSVVFNTDD-RVVSGSDD----------RTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGH 410 (481)
T ss_pred ------eeeeecccccceeEEEEecCC-ceeecCCC----------ceEEEeeeccccCcceeee-cCCccceeEeecCC
Confidence 011223567788999998765 45666555 7999999998877776665 35678888888765
Q ss_pred ccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE----EEeccccccEEEEEEcCCCC--EEEEEeCCCcEEEE
Q 010051 284 FNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA----ILAGLHYAAITDIAWSNNAR--YLALSSQDGYCTLV 357 (519)
Q Consensus 284 ~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~i~~~~~s~~g~--~l~~~~~dg~i~vw 357 (519)
. .|+.-..+..|++||+......+ .-.+ |...|+|++|..+-. -|++++.|..+.=|
T Consensus 411 ~----------------iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg-HrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 411 P----------------IIAIPHDNRQVRLFDLNGNRLARLPRTSRQG-HRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred c----------------eEEeccCCceEEEEecCCCccccCCcccccc-cceeeeeeeccccCcccccccccccceeeee
Confidence 3 33444445689999998544322 2234 889999999987653 48899999999999
Q ss_pred EecCC
Q 010051 358 EFEND 362 (519)
Q Consensus 358 d~~~~ 362 (519)
++...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98754
No 105
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.6e-27 Score=191.07 Aligned_cols=276 Identities=19% Similarity=0.285 Sum_probs=224.5
Q ss_pred cCcceeEEEEccC---------CCeEEEEEcccCCCcccce--eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 010051 63 HGSAINILRFSPC---------GGELIIWKLHTTETGQAWK--VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWD 131 (519)
Q Consensus 63 ~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 131 (519)
....+.|..|+|| ||.|.+||..+++....++ ....+--+..+|.|+.||.|...||+|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4456788899998 5889999998885443322 2223445789999999999999999999999999999
Q ss_pred cCCCceEEEec-ccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccce
Q 010051 132 VNKGSVLQILD-AHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNH 210 (519)
Q Consensus 132 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (519)
+++|.+++.+. +|+..|+++.|+.|+..+++++.|.++++.-+..++..
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L------------------------------ 341 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL------------------------------ 341 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH------------------------------
Confidence 99999999996 89999999999999999999999999999999887642
Q ss_pred eeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccC--CCCCCCeEEEEEcCCcccccc
Q 010051 211 LFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQL--PGASKPVVAVRFCPLAFNLRE 288 (519)
Q Consensus 211 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~ 288 (519)
.....|.++|+...|.++|.++++++.+ +.+++|+..+.. +..++ .+...+|+.+..-|.+.
T Consensus 342 -KEfrGHsSyvn~a~ft~dG~~iisaSsD----------gtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnp---- 405 (508)
T KOG0275|consen 342 -KEFRGHSSYVNEATFTDDGHHIISASSD----------GTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNP---- 405 (508)
T ss_pred -HHhcCccccccceEEcCCCCeEEEecCC----------ccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCC----
Confidence 2223577889999999999999999888 799999987653 33333 34566888888887653
Q ss_pred cCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccc
Q 010051 289 SNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL--HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGI 366 (519)
Q Consensus 289 ~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~ 366 (519)
..++.+...++|+|.++. |+.++.+..+ ..+...+++.||.|.++.+.+.|+.++.|.+.++.+..
T Consensus 406 -----------eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 406 -----------EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred -----------ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 457777888899999987 6777777542 24567778999999999999999999999999998766
Q ss_pred eeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 367 PISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
.+.. ++..+-.++.+|...+|++-+.|+..
T Consensus 474 tl~V------hEkdvIGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 474 TLPV------HEKDVIGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred eeec------ccccccccccCcccchhhhhcccchh
Confidence 6554 23466778899999999999999876
No 106
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=182.99 Aligned_cols=237 Identities=12% Similarity=0.206 Sum_probs=193.0
Q ss_pred CCCCCEEEEEEecCC-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCeE
Q 010051 11 HDTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGEL 79 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i 79 (519)
.-.+.+..++|+++. +.+++++.||+++|||..... .++..+..|...|.++.|++. |++|
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------cchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 345778999999875 477888899999999954322 145567789999999998876 7999
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC-CC
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP-LS 157 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~ 157 (519)
++|+...+ +.+.++.+|..-|...+|+| ..+.+++++.|+++++||++.......+..|...|.++.|+. +.
T Consensus 130 KLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 130 KLWDPNRP------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred EeecCCCC------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence 99999877 67788999999999999999 578999999999999999987555555899999999999986 56
Q ss_pred CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeE-EEe
Q 010051 158 KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFL-LVP 236 (519)
Q Consensus 158 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l-~~~ 236 (519)
+.|+|++.|+.|+.||++..+. ++.....|.-.|+.+.|||...-+ +++
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~------------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRT------------------------------PLFELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred cEEEecCCCceEEEEehhhccc------------------------------cceeecCCceEEEEEecCcchhhHhhhc
Confidence 7889999999999999998652 123334667789999999976554 444
Q ss_pred cCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 237 AGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 237 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
+-+ -+++|||.......+.+...|..-+..+.|++-.. .++++++.|..++||+.
T Consensus 254 sYD----------mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~---------------~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 254 SYD----------MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDP---------------GQVASTGWDELLYVWNP 308 (311)
T ss_pred ccc----------ceEEecccccchhhhhhhhccceEEeccccccccC---------------ceeeecccccceeeecc
Confidence 444 69999999877777777888888899999988521 57899999999999984
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=198.91 Aligned_cols=275 Identities=15% Similarity=0.163 Sum_probs=198.4
Q ss_pred eeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEe
Q 010051 95 VLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 173 (519)
.+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..++..+.+|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456678999999999999976 7899999999999999999999999999999999999986 7789999999999998
Q ss_pred cCCCCccccccccc--------eeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 174 NRPTKSKGVEKMNY--------VCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 174 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
+...-. ....... .....+...|..+..-.......+.........|.++.|+|-...++++++..
T Consensus 136 ~~~~p~-~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD----- 209 (433)
T KOG0268|consen 136 IDGPPL-HTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD----- 209 (433)
T ss_pred ccCCcc-eeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC-----
Confidence 766311 0000000 00111111111111111111111112222335577889999877666655332
Q ss_pred ecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceEE
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIAI 324 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~ 324 (519)
+.|.+||++......... ....-+.++|+|.+ -.++++..|..++.||++.. .++..
T Consensus 210 ----rsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPea----------------fnF~~a~ED~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 210 ----RSIVLYDLRQASPLKKVI--LTMRTNTICWNPEA----------------FNFVAANEDHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ----CceEEEecccCCccceee--eeccccceecCccc----------------cceeeccccccceehhhhhhcccchh
Confidence 799999998654322222 23455789999965 33677778889999999875 46667
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-e
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-T 403 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~ 403 (519)
..+ |.+.|.++.|||.|+-+++||.|.+|+||.++.+.....+.... ...|.++.||.|.+++++|++|+-| +
T Consensus 268 ~~d-hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-----Mq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 268 HKD-HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-----MQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred hcc-cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-----hheeeEEEEeccccEEEecCCCcceee
Confidence 777 99999999999999999999999999999998876555543322 3478999999999999999999877 4
Q ss_pred ec
Q 010051 404 AE 405 (519)
Q Consensus 404 ~~ 405 (519)
|.
T Consensus 342 Wk 343 (433)
T KOG0268|consen 342 WK 343 (433)
T ss_pred ee
Confidence 44
No 108
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.5e-25 Score=179.50 Aligned_cols=304 Identities=16% Similarity=0.224 Sum_probs=220.7
Q ss_pred EEecCCCCCEEEEEEecC-CCEEEEEcCCCcEEEEEecCCccccc---ccccc---ccccccccCcceeEEEEccC----
Q 010051 7 QINWHDTKPVLTLDFHPI-SGLLATGGADYDIKIWLINSGEKQKK---IPTAS---YQNSLSYHGSAINILRFSPC---- 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~-~~~la~~~~dg~i~iwd~~~~~~~~~---~~~~~---~~~~~~~~~~~v~~~~~~~~---- 75 (519)
.+...|.+.|.++...+. |+|+++|+.||.|.|||++....... +.... ....-.+|...|..+.|-|-
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 455679999999999884 78999999999999999976431110 00000 11224468888999999886
Q ss_pred ------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCceEEEeccccc
Q 010051 76 ------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD---GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFH 146 (519)
Q Consensus 76 ------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 146 (519)
|.+++|||..+.+ ....++ -.+.|..-++||- ..++|+|..|-.|++-|+.+|...+.+.+|.+
T Consensus 117 FtssSFDhtlKVWDtnTlQ------~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQ------EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecccccceEEEeecccce------eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 5899999998873 333333 3566777788883 45788888999999999999999999999999
Q ss_pred CeEEEEEcCCCCe-EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceee-ecCCCcceeeEE
Q 010051 147 YVQGVAWDPLSKY-VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF-HDETLPSFFRRL 224 (519)
Q Consensus 147 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 224 (519)
.|.++.|+|...+ |++|+.||.|++||++... .|..++..... ....+. ....|.+.+..+
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras---------gcf~~lD~hn~--------k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS---------GCFRVLDQHNT--------KRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeeccc---------ceeEEeecccC--------ccCccccccccccceeeee
Confidence 9999999998776 5899999999999998642 12222221110 111122 245678899999
Q ss_pred EEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCC--CCCCCeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 225 AWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLP--GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 225 ~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
+|+.+|.++++++.+ ..+++|+...+......+. .|+. -...+++ +-++.. ..+
T Consensus 253 a~tSd~~~l~~~gtd----------~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~-----~~~~~s--------~vf 308 (397)
T KOG4283|consen 253 AWTSDARYLASCGTD----------DRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVH-----IQSMDS--------DVF 308 (397)
T ss_pred eecccchhhhhccCc----------cceEEeecccCcccccccccccccc-cccceEE-----Eeeccc--------ceE
Confidence 999999999998877 5889999876554332221 1111 1111111 000000 234
Q ss_pred EEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 303 FAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
+..-.++.+.++++-.+..+..+.. |...|.+.++-|+=+.+.++..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l~~-h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRLST-HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEeeec-ccceeeEEeecCchhhhhccccCCccccccc
Confidence 4445568999999999999999999 9999999999999999999999999999976
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=207.98 Aligned_cols=262 Identities=17% Similarity=0.253 Sum_probs=208.8
Q ss_pred CCCCEE---EEEEe-cCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 12 DTKPVL---TLDFH-PISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 12 h~~~V~---~~~~s-p~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
|...|. ++..+ |.++||.+|+.||.|++|++.........
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------------------------------------ 63 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------------------------------------ 63 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCccc------------------------------------
Confidence 444444 44444 45678999999999999998654321000
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceEEEecccccCeEEEEE-cCCCCeEEEee
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG--SVLQILDAHFHYVQGVAW-DPLSKYVASLS 164 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~ 164 (519)
..+..++.|...|+.++...+++.|++++.|-+|++|+...+ -++.++..|...|.|+++ .++...+++||
T Consensus 64 ------~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgG 137 (735)
T KOG0308|consen 64 ------PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGG 137 (735)
T ss_pred ------chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecC
Confidence 235566679999999999999999999999999999999887 467788999999999999 77888999999
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.|+.|.+||+..+........+......+ .......|++++.++.|..++.|+..
T Consensus 138 LD~~IflWDin~~~~~l~~s~n~~t~~sl--------------------~sG~k~siYSLA~N~t~t~ivsGgte----- 192 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASFNNVTVNSL--------------------GSGPKDSIYSLAMNQTGTIIVSGGTE----- 192 (735)
T ss_pred CCccEEEEEccCcchhhhhhccccccccC--------------------CCCCccceeeeecCCcceEEEecCcc-----
Confidence 99999999999874311111111100000 00345779999999999777776655
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
+.+++||.+... .+..+.+|...|..+..++|| ..+++++.||+|++||+...+++.+
T Consensus 193 -----k~lr~wDprt~~-kimkLrGHTdNVr~ll~~dDG----------------t~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 193 -----KDLRLWDPRTCK-KIMKLRGHTDNVRVLLVNDDG----------------TRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred -----cceEEecccccc-ceeeeeccccceEEEEEcCCC----------------CeEeecCCCceEEeeeccccceeee
Confidence 689999998654 456677999999999999999 6688889999999999999999999
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
+.. |...|.++..+|+-..+++|+.||.|..=|+.+..
T Consensus 251 ~~v-H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 251 YIV-HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred EEe-ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 998 99999999999999999999999999999998853
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=202.45 Aligned_cols=312 Identities=18% Similarity=0.225 Sum_probs=226.9
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc--------------------C
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP--------------------C 75 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------------~ 75 (519)
..++.|++....|.+.-.|..++|||+..-+.+.+ ...+..|...|+.+...| .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccc------eeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 45788999999999999999999999987554432 223444666666655544 3
Q ss_pred CCeEEEEEcccCCCccccee-------------------------------eeccccCCCCeEEEEEcCCCCEEEEEeCC
Q 010051 76 GGELIIWKLHTTETGQAWKV-------------------------------LKNLSFHRKDVLDLQWSTDGAFLLSGSVD 124 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~-------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 124 (519)
|++|++|++........+.. ....-+....+.+++.+|+|++||+|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 79999999986432221100 00111244579999999999999999999
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcC---CCCeEEEeeCCCeEEEEecCCCCccccc--c-ccceeeEEEeccCc
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDP---LSKYVASLSSDRTCRIYANRPTKSKGVE--K-MNYVCQHVITKAGQ 198 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~-~~~~~~~~~~~~~~ 198 (519)
|.|+||++..-+.+..+..|...|.|+.|+- ..++|++++.|..|.+||+...-..... . ........+...+.
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 9999999999888888999999999999983 3568999999999999998764321110 0 00011111111111
Q ss_pred c------------cccC-CccccceeeecC---CCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc
Q 010051 199 H------------STDD-SKSAKNHLFHDE---TLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR 262 (519)
Q Consensus 199 ~------------~~~~-~~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 262 (519)
. .+.. .......++... -....++.++..|..+++++++.+ .+|+||++....
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD----------rnirif~i~sgK- 629 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD----------RNIRIFDIESGK- 629 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc----------cceEEEeccccc-
Confidence 0 0000 000111111111 123568899999999999999888 799999997654
Q ss_pred ccccC---CCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEc
Q 010051 263 PALQL---PGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWS 339 (519)
Q Consensus 263 ~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s 339 (519)
....+ .+|++....+...|.| .++++.+.|.++.++|..+++++....+ |...|+.+.|.
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSg----------------iY~atScsdktl~~~Df~sgEcvA~m~G-HsE~VTG~kF~ 692 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSG----------------IYLATSCSDKTLCFVDFVSGECVAQMTG-HSEAVTGVKFL 692 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCc----------------cEEEEeecCCceEEEEeccchhhhhhcC-cchheeeeeec
Confidence 33333 4567788899999998 5678888888999999999999999999 99999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEecC
Q 010051 340 NNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 340 ~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
+|-+.|++.+.||+|.||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999999864
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=191.51 Aligned_cols=250 Identities=20% Similarity=0.244 Sum_probs=201.5
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEE
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWK 83 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~ 83 (519)
..+.++.||+..|+.+.|+|+...+++++.|..|+||.......
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~------------------------------------ 295 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE------------------------------------ 295 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC------------------------------------
Confidence 45677889999999999999999999999999999998754431
Q ss_pred cccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc--cccCeEEEEEcCCCCeEE
Q 010051 84 LHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA--HFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~ 161 (519)
......|..+|+.+..+|.|.||++++.|++..+.|++++..+..... ..-.+++++|+|||..|.
T Consensus 296 ------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg 363 (506)
T KOG0289|consen 296 ------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG 363 (506)
T ss_pred ------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe
Confidence 222334899999999999999999999999999999999988766543 234589999999999999
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
+|..||.+++||+..... +.....|.++|..++|+.+|-||++++.+
T Consensus 364 tgt~d~~vkiwdlks~~~-------------------------------~a~Fpght~~vk~i~FsENGY~Lat~add-- 410 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTN-------------------------------VAKFPGHTGPVKAISFSENGYWLATAADD-- 410 (506)
T ss_pred ccCCCceEEEEEcCCccc-------------------------------cccCCCCCCceeEEEeccCceEEEEEecC--
Confidence 999999999999987541 22233578999999999999999998887
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC--CC
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE--SV 319 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~--~~ 319 (519)
+.|++||++...............+.++.|.+.|.+ ++.++.+=.|++++-. ++
T Consensus 411 --------~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~----------------L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 411 --------GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY----------------LGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred --------CeEEEEEehhhcccceeeccccccceeEEEcCCCCe----------------EEeecceeEEEEEecccccc
Confidence 579999998765322222233347999999999955 4455554466666532 56
Q ss_pred CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 320 PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
..+..+.. |.+..+.+.|....++|++++.|..++++.+
T Consensus 467 ~~~~~~~~-~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELAD-HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhh-cccccceeeecccceEEeeccchhheEEeec
Confidence 77777877 8889999999999999999999999988764
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-25 Score=201.44 Aligned_cols=280 Identities=11% Similarity=0.115 Sum_probs=224.5
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcc
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~ 85 (519)
-..+.+|...|..+++.+. ..+++++.||+++||+-..++.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l------------------------------------- 48 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYL------------------------------------- 48 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccc-------------------------------------
Confidence 3456789999999998754 48899999999999986544422
Q ss_pred cCCCcccceeeeccccCCCCeEE-EEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEe
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLD-LQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL 163 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 163 (519)
....+.+|.+-|.+ ++|-+ ++-.|++|+.|.+|.+|.+.+..++..+.+|...|.++....++. +++|
T Consensus 49 ---------~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg 118 (745)
T KOG0301|consen 49 ---------ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG 118 (745)
T ss_pred ---------cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec
Confidence 11223345555555 77765 555699999999999999999999999999999999999877776 9999
Q ss_pred eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCccee
Q 010051 164 SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIS 243 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 243 (519)
|.|.++++|...... .....|+..|..+..-|.+ .+++++.+
T Consensus 119 SWD~TakvW~~~~l~---------------------------------~~l~gH~asVWAv~~l~e~-~~vTgsaD---- 160 (745)
T KOG0301|consen 119 SWDSTAKVWRIGELV---------------------------------YSLQGHTASVWAVASLPEN-TYVTGSAD---- 160 (745)
T ss_pred ccccceEEecchhhh---------------------------------cccCCcchheeeeeecCCC-cEEeccCc----
Confidence 999999999765432 2244678889999999988 66777777
Q ss_pred eeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE
Q 010051 244 SMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA 323 (519)
Q Consensus 244 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 323 (519)
..|++|.- +....++.+|...|..+++-+++ .+++++.||.|++|++ +|+++.
T Consensus 161 ------KtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-----------------~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 161 ------KTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-----------------HFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred ------ceeeeccC---CchhhhhccchhheeeeEEecCC-----------------CeEeecCCceEEEEec-cCceee
Confidence 69999976 46678899999999999999873 4899999999999999 799999
Q ss_pred EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceee
Q 010051 324 ILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVT 403 (519)
Q Consensus 324 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 403 (519)
.+.+ |...|++++...++..+++++.|++++||+.. ++...+.+++. .++++.+-++|..++.++++..-+
T Consensus 214 ~~~g-htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt------siWsa~~L~NgDIvvg~SDG~VrV 284 (745)
T KOG0301|consen 214 EMHG-HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT------SIWSAKVLLNGDIVVGGSDGRVRV 284 (745)
T ss_pred eeec-cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc------ceEEEEEeeCCCEEEeccCceEEE
Confidence 9999 99999999988899999999999999999987 55666666553 467777777777666555555556
Q ss_pred ecCC
Q 010051 404 AETK 407 (519)
Q Consensus 404 ~~~~ 407 (519)
|...
T Consensus 285 fT~~ 288 (745)
T KOG0301|consen 285 FTVD 288 (745)
T ss_pred EEec
Confidence 6554
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.6e-26 Score=197.86 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=208.9
Q ss_pred ccccccCcceeEEEEccCC---------CeEEEEEcccCCCcccceeeeccc-cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 010051 58 NSLSYHGSAINILRFSPCG---------GELIIWKLHTTETGQAWKVLKNLS-FHRKDVLDLQWSTDGAFLLSGSVDNSC 127 (519)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 127 (519)
..+.+|...|.++++.|.| -+|++||+....... +..+.+. .....|+++.|++.|..|++.+...+.
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~--~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM--RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc--hhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4577888999999999984 688999998664322 1222222 345679999999999999999888999
Q ss_pred EEEEcCCCceEE------------EecccccCeEEEEEcCCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEe
Q 010051 128 IIWDVNKGSVLQ------------ILDAHFHYVQGVAWDPLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVIT 194 (519)
Q Consensus 128 ~vwd~~~~~~~~------------~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 194 (519)
+|+|......+. ..++|...++|.+|+|.. +.|+|++.||++++||+...+... .++.
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~---------qVik 309 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL---------QVIK 309 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe---------eEEe
Confidence 999965433222 236899999999999964 578999999999999998765211 1111
Q ss_pred ccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC-cc-cccCCCCCC
Q 010051 195 KAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS-RP-ALQLPGASK 272 (519)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~-~~~~~~~~~ 272 (519)
. .......-.++.++|+|||++||+++.+ +.|.+|+..... .+ +..-..|..
T Consensus 310 ~----------------k~~~g~Rv~~tsC~~nrdg~~iAagc~D----------GSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 310 T----------------KPAGGKRVPVTSCAWNRDGKLIAAGCLD----------GSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred e----------------ccCCCcccCceeeecCCCcchhhhcccC----------CceeeeecCCcccccceEeeeccCC
Confidence 0 1111233457899999999999999888 799999975443 22 223346666
Q ss_pred --CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceEEEecc-ccccEEEEEEcCCCCEEEEE
Q 010051 273 --PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIAILAGL-HYAAITDIAWSNNARYLALS 348 (519)
Q Consensus 273 --~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~ 348 (519)
.|+++.||+||++| ++=+.|+++++||++.. +++....+. ...+-+.++|||+.++|++|
T Consensus 364 g~~Itsi~FS~dg~~L----------------lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYL----------------LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred CCceeEEEeccccchh----------------hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence 89999999999554 55555669999999875 445444431 23456889999999999998
Q ss_pred eC------CCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCCC
Q 010051 349 SQ------DGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 349 ~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~ 408 (519)
.. .|.+.+||-.+-+....+.+. ...|..+.|+|.=..|..++.|+.+ +.-...
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v~ki~i~------~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTVYKIDIS------TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ccccCCCCCceEEEEeccceeeEEEecCC------CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 63 377999987766554444433 3567889999987777777766666 444443
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-25 Score=190.53 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=197.5
Q ss_pred CcEEEEEecCCccccccccccccccccccC----cceeEEEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEE
Q 010051 35 YDIKIWLINSGEKQKKIPTASYQNSLSYHG----SAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQ 110 (519)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 110 (519)
..+.+||+.+|.....+..... ...|. ...+-++-.-.-..|.+|.+..... .....--.+.|.+++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~---a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~------~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYL---AQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQ------VVQYIVLPGPVHALA 88 (476)
T ss_pred cceeEEecCCCceeEEecCccc---ccchhhhhhchhheeeecccCccccccccCchhh------hhhhcccccceeeee
Confidence 4599999999987766543211 11111 1122233333345788998865421 111222467899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceee
Q 010051 111 WSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQ 190 (519)
Q Consensus 111 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 190 (519)
-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+++.|+-|+.+|+|||.||.|.+|.+...-.....
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~------- 161 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND------- 161 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC-------
Confidence 9999999999989999999999999999999999999999999999999999999999999987542111000
Q ss_pred EEEeccCcccccCCccccceeeecCCCcceeeEEEEccC--CCeEEEecCCcceeeeecccceEEEEeccCCCcccccCC
Q 010051 191 HVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD--GSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLP 268 (519)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 268 (519)
.....+.....|.-.|+.+...+. ..++++++.| ..+++||+...... ..+
T Consensus 162 ---------------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D----------~t~k~wdlS~g~LL-lti- 214 (476)
T KOG0646|consen 162 ---------------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED----------RTIKLWDLSLGVLL-LTI- 214 (476)
T ss_pred ---------------CCccceeeeccCcceeEEEEecCCCccceEEEecCC----------ceEEEEEeccceee-EEE-
Confidence 011122333456667777777664 4567777766 79999999765322 222
Q ss_pred CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC----------------CCceEEEeccccc-
Q 010051 269 GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES----------------VPPIAILAGLHYA- 331 (519)
Q Consensus 269 ~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~- 331 (519)
.....+.+++..|.+ +.+++|+.+|.|.+.++.. +..+..+.+ |.+
T Consensus 215 ~fp~si~av~lDpae----------------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~ 277 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAE----------------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENE 277 (476)
T ss_pred ecCCcceeEEEcccc----------------cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc-ccCC
Confidence 245689999999988 5677777777887776543 234556677 877
Q ss_pred -cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceee
Q 010051 332 -AITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPIS 369 (519)
Q Consensus 332 -~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~ 369 (519)
.|+|++.+-||.+|++|+.||.|+|||+.+.+....+.
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 99999999999999999999999999999887655544
No 115
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.9e-25 Score=208.02 Aligned_cols=246 Identities=22% Similarity=0.282 Sum_probs=202.1
Q ss_pred CCeeEE-ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC------
Q 010051 3 GGTLQI-NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------ 75 (519)
Q Consensus 3 ~~~~~~-~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 75 (519)
+..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++|||+.+|++... +.+|.+.+.++...+.
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---------l~gh~stv~~~~~~~~~~~sgs 308 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---------LQGHTSSVRCLTIDPFLLVSGS 308 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---------ecCCCceEEEEEccCceEeecc
Confidence 444555 789999999999998788999999999999999999997664 5679999988887553
Q ss_pred -CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 76 -GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 76 -~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
|.+|++|++.++ ..+..+.+|...|+++..+ +.++++|+.|++|.+||+.+++++..+.+|...|.++.+.
T Consensus 309 ~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 309 RDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVD 380 (537)
T ss_pred CCceEEEEeccCc------ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEec
Confidence 799999999987 7888888899999999998 8899999999999999999999999999999999999887
Q ss_pred CCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEE
Q 010051 155 PLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLL 234 (519)
Q Consensus 155 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 234 (519)
+. ..+++|+.|++|++||+++.. .|... ...+...+ -.+...+++|+
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~~~~---------~c~~t---------------------l~~h~~~v--~~l~~~~~~Lv 427 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLRTKR---------KCIHT---------------------LQGHTSLV--SSLLLRDNFLV 427 (537)
T ss_pred Cc-ceEEeeeeccceEeecCCchh---------hhhhh---------------------hcCCcccc--cccccccceeE
Confidence 65 899999999999999999873 11111 11222333 22334678888
Q ss_pred EecCCcceeeeecccceEEEEeccCCCcccccCCC-CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE
Q 010051 235 VPAGSYKISSMSESINSAYIFSRKDLSRPALQLPG-ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI 313 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v 313 (519)
+++.+ +.|++||..+. .+...+.+ |...|..+.+.. ..+++++.++.+.+
T Consensus 428 s~~aD----------~~Ik~WD~~~~-~~~~~~~~~~~~~v~~l~~~~------------------~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 428 SSSAD----------GTIKLWDAEEG-ECLRTLEGRHVGGVSALALGK------------------EEILCSSDDGSVKL 478 (537)
T ss_pred ecccc----------ccEEEeecccC-ceeeeeccCCcccEEEeecCc------------------ceEEEEecCCeeEE
Confidence 87777 69999998764 45566666 667888888762 46899999999999
Q ss_pred EeCCCCCceEEEec
Q 010051 314 YDTESVPPIAILAG 327 (519)
Q Consensus 314 wd~~~~~~~~~~~~ 327 (519)
||+++++....+..
T Consensus 479 ~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 479 WDLRSGTLIRTLLS 492 (537)
T ss_pred EecccCchhhhhhh
Confidence 99999998877644
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=4.6e-25 Score=198.93 Aligned_cols=366 Identities=17% Similarity=0.191 Sum_probs=249.2
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------Ce
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------GE 78 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~ 78 (519)
++.||.+.|.++.|+|.+..|++++.|.++.||...+..-+-.-. -....+.+....-....|+|++ |.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~--vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV--VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE--EEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 446999999999999999999999999999999765442111100 0111233445566777788875 67
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceEEEecccccCeEEEEEc
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG----SVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~ 154 (519)
.++|.. +....|.....+.||...|+.++|.|.|.+|++++.|.+-+++-.-.. ..+..-+-|...++|++|-
T Consensus 340 ~hlWkt---~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 340 FHLWKT---KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred EEEEec---cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 788872 234456677788899999999999999999999999999999875411 2334446688899999998
Q ss_pred CCCCeEEEeeCCCeEEEEecCCCCccccc-----------c---------ccceeeEEEe---ccCcc------------
Q 010051 155 PLSKYVASLSSDRTCRIYANRPTKSKGVE-----------K---------MNYVCQHVIT---KAGQH------------ 199 (519)
Q Consensus 155 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~---------~~~~~~~~~~---~~~~~------------ 199 (519)
+....|++|.+...+|+|+....-..... . +.......+. ..+..
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 86678899999999999976532100000 0 0000000000 00000
Q ss_pred ---cccCC---cccccee----eecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCC
Q 010051 200 ---STDDS---KSAKNHL----FHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPG 269 (519)
Q Consensus 200 ---~~~~~---~~~~~~~----~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 269 (519)
..... +-....+ .....|...|++++.+|+|+.+++++.... .....|++|+..+.. ....+.+
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~-----~ehAvI~lw~t~~W~-~~~~L~~ 570 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL-----KEHAVIRLWNTANWL-QVQELEG 570 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC-----ccceEEEEEeccchh-hhheecc
Confidence 00000 0000001 112347788999999999999999875531 223579999987664 3457899
Q ss_pred CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc----eEEEeccccccEEEEEEcCCCCEE
Q 010051 270 ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP----IAILAGLHYAAITDIAWSNNARYL 345 (519)
Q Consensus 270 ~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~i~~~~~s~~g~~l 345 (519)
|.-.|+.++||||| ++|++.+.|.++.+|....... ....+. |..-|.++.|+|++.++
T Consensus 571 HsLTVT~l~FSpdg----------------~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~-HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDG----------------RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA-HTRIIWDCSWSPDEKYF 633 (764)
T ss_pred cceEEEEEEECCCC----------------cEEEEeecCceEEeeeeecccchhhhhccccc-cceEEEEcccCccccee
Confidence 99999999999999 6789999999999998764321 223455 99999999999999999
Q ss_pred EEEeCCCcEEEEEecCC--cccceeeecCCcccccCCCCcccccCCc-----cEEEeecCCcee-eec
Q 010051 346 ALSSQDGYCTLVEFEND--ELGIPISLSGNKVSKDENKSPLVTKSED-----MIIEASTNDKLV-TAE 405 (519)
Q Consensus 346 ~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~l~~~~~d~~i-~~~ 405 (519)
+|+|.|.+|+||..... +....+. .......|+++++.|-. ..++.|-..|.| +|.
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~a----~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRFA----CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhhc----hhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 99999999999999876 3222221 11234567777765522 256666666655 554
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=182.42 Aligned_cols=286 Identities=16% Similarity=0.139 Sum_probs=196.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccc
Q 010051 106 VLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKM 185 (519)
Q Consensus 106 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 185 (519)
..|+.|++.|.+||+|..||.|.+||+.+....+.+.+|..+|++++|+++|+.|+|++.|..|.+||+..+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l----- 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL----- 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce-----
Confidence 789999999999999999999999999999988899999999999999999999999999999999999987532
Q ss_pred cceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccc
Q 010051 186 NYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL 265 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 265 (519)
....+.++|..+.|+|..+..++++.-. ..-.+.++.+......
T Consensus 101 ---------------------------~rirf~spv~~~q~hp~k~n~~va~~~~---------~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 101 ---------------------------KRIRFDSPVWGAQWHPRKRNKCVATIME---------ESPVVIDFSDPKHSVL 144 (405)
T ss_pred ---------------------------eEEEccCccceeeeccccCCeEEEEEec---------CCcEEEEecCCceeec
Confidence 2223467788999999765555433211 1122333322111111
Q ss_pred cCCC---CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCC
Q 010051 266 QLPG---ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNA 342 (519)
Q Consensus 266 ~~~~---~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g 342 (519)
.... .+..-.+..|.+.| +++++|...|.+.+||..+.+++..++-.....|..+.|+..|
T Consensus 145 p~d~d~dln~sas~~~fdr~g----------------~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRG----------------KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred cCCCccccccccccccccCCC----------------CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence 1100 00111122455555 6788888889999999999999998887233789999999999
Q ss_pred CEEEEEeCCCcEEEEEecCCccc-c-eeeecCC---cccccCCCCcccccCCccEEEeec--CCceeeecCCCCCccccc
Q 010051 343 RYLALSSQDGYCTLVEFENDELG-I-PISLSGN---KVSKDENKSPLVTKSEDMIIEAST--NDKLVTAETKEPDKRKTE 415 (519)
Q Consensus 343 ~~l~~~~~dg~i~vwd~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~--~d~~i~~~~~~~~~~~~~ 415 (519)
++|+.-+.|..||.|++..-... . ....+.| .......+.+++||.+|.++++++ .....+|+..-+....-.
T Consensus 209 ~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 209 RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 99999999999999998732110 0 0111111 124567889999999999998877 344458988877665444
Q ss_pred cccCCCceE----------Eeccccceeeeecccccccccccc
Q 010051 416 AETKDDETA----------INGSIAAESRLIEPERNEAESRKA 448 (519)
Q Consensus 416 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 448 (519)
...+++..+ +..-..+...+|.....+.-...+
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~enwsafA 331 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVENWSAFA 331 (405)
T ss_pred cCCchhheeecccccceeeeeeccCCceEEEEeecccchhhcC
Confidence 433333322 112245566667554444333333
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.6e-24 Score=167.06 Aligned_cols=243 Identities=22% Similarity=0.311 Sum_probs=191.5
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-----------
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------- 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------- 75 (519)
+...+|.+.|+|.+|||+|.+||+|+.|.+|++.-++...+... .....+.-|.+.|..++|..+
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~----g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT----GHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc----CcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 44578999999999999999999999999999987765443221 122345668999999999755
Q ss_pred ---CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc--c-----c
Q 010051 76 ---GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA--H-----F 145 (519)
Q Consensus 76 ---~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h-----~ 145 (519)
|..|++-|...+ +.++.+.+|++.|.++- +-+|-++++|+.|.+|++||++-..++..+.. | .
T Consensus 159 gagdc~iy~tdc~~g------~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRG------QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred CCCcceEEEeecCCC------CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 345666676666 56778889999998763 33488999999999999999998888776632 2 3
Q ss_pred cCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEE
Q 010051 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLA 225 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (519)
+.|.+++..|.|++|++|-.|....+||++.++. +.....|...|+++.
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~-------------------------------iq~f~phsadir~vr 280 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-------------------------------IQRFHPHSADIRCVR 280 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCce-------------------------------eeeeCCCccceeEEE
Confidence 5799999999999999999999999999998763 223346678899999
Q ss_pred EccCCCeEEEecCCcceeeeecccceEEEEeccCC---CcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 226 WSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDL---SRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 226 ~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
|+|...|+++++-+ ..|++-|+... ..++.....|...+..+.|+|.... +
T Consensus 281 fsp~a~yllt~syd----------~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s----------------f 334 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYD----------MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS----------------F 334 (350)
T ss_pred eCCCceEEEEeccc----------ceEEEeecccchhhcCceEEEEeccCceEEEEecCccce----------------e
Confidence 99999999998877 68888887533 2345556688999999999998733 5
Q ss_pred EEEecCCeEEEEeCC
Q 010051 303 FAIATLNSLYIYDTE 317 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~ 317 (519)
++.+.|.++.+|-+.
T Consensus 335 isssadkt~tlwa~~ 349 (350)
T KOG0641|consen 335 ISSSADKTATLWALN 349 (350)
T ss_pred eeccCcceEEEeccC
Confidence 667777889998653
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=176.55 Aligned_cols=258 Identities=19% Similarity=0.220 Sum_probs=195.5
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---ceEEEecccccCeEEEEEcC--CCCeEEEeeCCCeEEEEec
Q 010051 100 SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG---SVLQILDAHFHYVQGVAWDP--LSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 100 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 174 (519)
+.|.+.|..+...-.|++|||++.|++|+|+.++++ +++..+.+|.++|..++|.. -|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 458888888887778999999999999999999874 46788999999999999964 6899999999999999998
Q ss_pred CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC--CCeEEEecCCcceeeeecccceE
Q 010051 175 RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD--GSFLLVPAGSYKISSMSESINSA 252 (519)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~i 252 (519)
.+++... ......|...|++++|-|. |-.|++++.+ +.|
T Consensus 88 ~~g~w~k-----------------------------~~e~~~h~~SVNsV~wapheygl~LacasSD----------G~v 128 (299)
T KOG1332|consen 88 ENGRWTK-----------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSD----------GKV 128 (299)
T ss_pred CCCchhh-----------------------------hhhhhhhcccceeecccccccceEEEEeeCC----------CcE
Confidence 8764221 1222356788999999986 5677777777 577
Q ss_pred EEEeccCCC--cccccCCCCCCCeEEEEEcCC---cccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC--ceEEE
Q 010051 253 YIFSRKDLS--RPALQLPGASKPVVAVRFCPL---AFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP--PIAIL 325 (519)
Q Consensus 253 ~i~~~~~~~--~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~ 325 (519)
.+++.+..+ ........|.-.|+++.|.|. |..+-.+.... -..+++|+.|+.|+||+..++. ....+
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~-----~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAK-----VKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccc-----cceeeccCCccceeeeecCCcchhhhhhh
Confidence 777765542 233456689999999999996 43322222222 2679999999999999988753 34557
Q ss_pred eccccccEEEEEEcCCC----CEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCce
Q 010051 326 AGLHYAAITDIAWSNNA----RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 326 ~~~~~~~i~~~~~s~~g----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
.+ |...|++++|.|.- .+||+++.||+|.||..+.. . .++...-.. .....+..+.||..|..|+.++.|..
T Consensus 204 ~~-H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~-e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 204 EG-HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-Y-EPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred hh-cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-c-Ccccccccc-cCCcceEEEEEeccccEEEEecCCcE
Confidence 77 99999999999974 57999999999999988732 2 222111111 12467889999999999998887776
Q ss_pred e-eec
Q 010051 402 V-TAE 405 (519)
Q Consensus 402 i-~~~ 405 (519)
+ +|.
T Consensus 280 vtlwk 284 (299)
T KOG1332|consen 280 VTLWK 284 (299)
T ss_pred EEEEE
Confidence 6 554
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=5.7e-24 Score=184.97 Aligned_cols=313 Identities=18% Similarity=0.275 Sum_probs=223.0
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------CCeEEEEEc
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------GGELIIWKL 84 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~i~vw~~ 84 (519)
.+.|..+.|+|.+..|+.....+.+..|+.+.+...++...... .....|.|++|.++ +|.|.||+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-----~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-----REKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc-----ccceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 35688899999887555444467899999998876665432211 12267999999998 489999998
Q ss_pred ccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----------------------------
Q 010051 85 HTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS---------------------------- 136 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------- 136 (519)
... +..+....|.+.|.+++...+|. |++|+.|..|..||-.-.+
T Consensus 275 ~~~------~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 275 GTN------RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred CCc------eEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 655 44444458999999999999997 4559999999999832000
Q ss_pred ------------eEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCC
Q 010051 137 ------------VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDS 204 (519)
Q Consensus 137 ------------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
......+|......++.+|+.+.++|++.|+.+++|+ ..+.
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~------------------------- 400 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL------------------------- 400 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce-------------------------
Confidence 0012246777889999999999999999999999998 2221
Q ss_pred ccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcc
Q 010051 205 KSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAF 284 (519)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 284 (519)
........+..++.|+|.| .+++++.. +...+.|..+ ..+..+.....++++++|+|+|
T Consensus 401 -------~wt~~~~d~~~~~~fhpsg-~va~Gt~~----------G~w~V~d~e~--~~lv~~~~d~~~ls~v~ysp~G- 459 (626)
T KOG2106|consen 401 -------EWTKIIEDPAECADFHPSG-VVAVGTAT----------GRWFVLDTET--QDLVTIHTDNEQLSVVRYSPDG- 459 (626)
T ss_pred -------eEEEEecCceeEeeccCcc-eEEEeecc----------ceEEEEeccc--ceeEEEEecCCceEEEEEcCCC-
Confidence 1111234557799999999 88888776 6788888865 2233333338899999999999
Q ss_pred cccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 285 NLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI-LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 285 ~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
.+++.|+.|+.|++|.+..+..... ....|..+|+.+.||+|+++|.+-+.|-.|..|. .+.
T Consensus 460 ---------------~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~- 522 (626)
T KOG2106|consen 460 ---------------AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSE- 522 (626)
T ss_pred ---------------CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-ccc-
Confidence 6678888888999999876544433 3333568999999999999999999999999993 221
Q ss_pred ccceeeecC-----------C---cccccCCCCcccccCCccEEEeecCCcee
Q 010051 364 LGIPISLSG-----------N---KVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 364 ~~~~~~~~~-----------~---~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
......... . .......+..++-+....+++++.+.+.+
T Consensus 523 ~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 523 CKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred CcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 111111110 0 01234456667777777777777777766
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.6e-24 Score=175.02 Aligned_cols=260 Identities=15% Similarity=0.197 Sum_probs=195.0
Q ss_pred CcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 010051 64 GSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK 134 (519)
Q Consensus 64 ~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 134 (519)
...|..+.|+|. ||.+++|+.... .....+. |..++.+++|.+ ...+++|+.||.|+++|+++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~------~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN------SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch------hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence 355777777754 789999998765 2333333 899999999986 55799999999999999988
Q ss_pred CceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeec
Q 010051 135 GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHD 214 (519)
Q Consensus 135 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (519)
+... .+..|..+|+++.+++....+++|+.|++|++||.+........
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~------------------------------- 132 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF------------------------------- 132 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------
Confidence 8764 46679999999999998899999999999999999863211100
Q ss_pred CCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccccc-CCCCCCCeEEEEEcCCcccccccCCCC
Q 010051 215 ETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ-LPGASKPVVAVRFCPLAFNLRESNSAG 293 (519)
Q Consensus 215 ~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g 293 (519)
.....|.++.. .|..|++++.+ ..+.+||+++...+... -......+.++++-|.+.-
T Consensus 133 -d~~kkVy~~~v--~g~~LvVg~~~----------r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-------- 191 (323)
T KOG1036|consen 133 -DQGKKVYCMDV--SGNRLVVGTSD----------RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-------- 191 (323)
T ss_pred -ccCceEEEEec--cCCEEEEeecC----------ceEEEEEcccccchhhhccccceeEEEEEEEecCCCc--------
Confidence 11234555554 46778886666 68999999987765533 2344567899999996633
Q ss_pred cccccceEEEEEecCCeEEEEeCCCC----CceEEEecccc---------ccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 294 FFKLPYRLIFAIATLNSLYIYDTESV----PPIAILAGLHY---------AAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 294 ~~~~~~~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+++++.||.|.+=.+... +....|+. |. -+|++|+|+|--..||||+.||.|.+||+.
T Consensus 192 --------y~~sSieGRVavE~~d~s~~~~skkyaFkC-Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 192 --------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKC-HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred --------eEEEeecceEEEEccCCchHHhhhceeEEe-eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 667777778777555544 44456665 53 479999999999999999999999999998
Q ss_pred CCcccceeeecCCcccccCCCCcccccCCccEEEeecCC
Q 010051 361 NDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 399 (519)
+.+....+. . ....|..++|+.||..||.++.-
T Consensus 263 ~rKrl~q~~--~----~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 263 NRKRLKQLA--K----YETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred chhhhhhcc--C----CCCceEEEEeccCCCeEEEEech
Confidence 875444332 1 23578999999999999998754
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.2e-23 Score=187.74 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=186.0
Q ss_pred CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCeEEEEEcccCCCcccce
Q 010051 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGELIIWKLHTTETGQAWK 94 (519)
Q Consensus 25 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~~~~~~~~~~ 94 (519)
+.++++++.|+.|++||..+++....+... ..+..++|+|+ ++.|++||+.++ +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~----------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~------~ 64 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG----------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG------E 64 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC----------CCCCceEECCCCCEEEEEECCCCeEEEEECCCC------c
Confidence 357889999999999999988766554321 12334444444 578889998766 3
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC-eEEEE
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSG-SVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR-TCRIY 172 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-~i~iw 172 (519)
....+..+. .+..++|+|+++.++++ +.++.|++||+.+++.+..+..+ ..+.+++|+|+++++++++.++ .+.+|
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 65 VIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred EEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 444444333 35678999999977655 56899999999988877766533 3468899999999999888775 46677
Q ss_pred ecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceE
Q 010051 173 ANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSA 252 (519)
Q Consensus 173 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i 252 (519)
|..+.+.... + .....+..++|+|+|+++++++... +.+
T Consensus 143 d~~~~~~~~~----------~----------------------~~~~~~~~~~~s~dg~~l~~~~~~~---------~~v 181 (300)
T TIGR03866 143 DTKTYEIVDN----------V----------------------LVDQRPRFAEFTADGKELWVSSEIG---------GTV 181 (300)
T ss_pred eCCCCeEEEE----------E----------------------EcCCCccEEEECCCCCEEEEEcCCC---------CEE
Confidence 8765432100 0 0112245789999999987654321 689
Q ss_pred EEEeccCCCcccccCCC-----C--CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEE
Q 010051 253 YIFSRKDLSRPALQLPG-----A--SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAIL 325 (519)
Q Consensus 253 ~i~~~~~~~~~~~~~~~-----~--~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 325 (519)
++||+..... ...+.. + ......+.|+|+++.+ +++.+.++.+.+||+.+++.+..+
T Consensus 182 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~---------------~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 182 SVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTA---------------FVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred EEEEcCccee-eeeeeecccccccccCCccceEECCCCCEE---------------EEEcCCCCeEEEEECCCCcEEEEE
Confidence 9999875432 221111 1 1123468899988542 333445678999999988877665
Q ss_pred eccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEecCCcccceeee
Q 010051 326 AGLHYAAITDIAWSNNARYLALS-SQDGYCTLVEFENDELGIPISL 370 (519)
Q Consensus 326 ~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~ 370 (519)
. +...+.+++|+|+|++|+++ +.+|.|++||+.+++....+..
T Consensus 246 ~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 246 L--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred E--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 4 34579999999999999886 4689999999999876655553
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.5e-24 Score=185.19 Aligned_cols=240 Identities=18% Similarity=0.254 Sum_probs=184.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc---------CCCeEEE
Q 010051 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP---------CGGELII 81 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~i~v 81 (519)
+|...|.+++.||||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-- .|+.|++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---------VFKGHRGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh---------cccccccceeeeeeecCccceeeeecCCceEE
Confidence 899999999999999999999999999999999998654 3778999999999843 3799999
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
|++... ..+.++.+|.+.|..|....-++.+-+|+.|+++++|++.. .....+.+|.+.+-|++|-. ...|+
T Consensus 271 w~~~~~------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~Hfv 342 (479)
T KOG0299|consen 271 WSIDQL------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFV 342 (479)
T ss_pred EehhHh------HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-cccee
Confidence 999876 67888999999999999887777777777999999999944 33446788888999999974 57799
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
+|+.+|.|.+|++...++...... +.| +.
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~------------------------------------------AHg--v~------- 371 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRL------------------------------------------AHG--VI------- 371 (479)
T ss_pred eccCCceEEEeeecccCceeEeec------------------------------------------ccc--cc-------
Confidence 999999999999887652110000 000 00
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC--
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-- 319 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-- 319 (519)
+......+...|++++..|.. +++++|+.+|.|++|-+..+
T Consensus 372 ---------------------~~~~~~~~~~Witsla~i~~s----------------dL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 372 ---------------------PELDPVNGNFWITSLAVIPGS----------------DLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ---------------------CCccccccccceeeeEecccC----------------ceEEecCCCCceEEEEecCCcc
Confidence 000011223578888888876 66888888899999999877
Q ss_pred --CceEEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEE
Q 010051 320 --PPIAILAGLHYAAITDIAWSNNARYLALS-SQDGYCTLV 357 (519)
Q Consensus 320 --~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vw 357 (519)
.++..+. -.+.|++++|+++|++|++| +....+--|
T Consensus 415 ~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 415 AINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccceeeecc--cccEEEEEEEccCCCEEEEeccccccccee
Confidence 3444444 36789999999999976665 344444333
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=177.58 Aligned_cols=280 Identities=15% Similarity=0.201 Sum_probs=221.5
Q ss_pred ccccccCcceeEEEEcc---------CCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 010051 58 NSLSYHGSAINILRFSP---------CGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCI 128 (519)
Q Consensus 58 ~~~~~~~~~v~~~~~~~---------~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 128 (519)
..+.+|.+.|..++... .|.+.+||.++++ .++..+.||.+.|++++|++.+.++++++.|++..
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccc------cceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 34677888888777543 3788999999998 89999999999999999999999999999999999
Q ss_pred EEEc------CC------------------------------C----ceEEEecccccCeEEEEEcCCCCeEEEeeCCCe
Q 010051 129 IWDV------NK------------------------------G----SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRT 168 (519)
Q Consensus 129 vwd~------~~------------------------------~----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~ 168 (519)
||.. .. + .++..+.+|.+.|.+..|...++.+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9962 10 0 134567889999999999999999999999999
Q ss_pred EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecc
Q 010051 169 CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~ 248 (519)
..+||+.++.... ....|....+.++-+|..+++++++.+
T Consensus 296 AnlwDVEtge~v~-------------------------------~LtGHd~ELtHcstHptQrLVvTsSrD--------- 335 (481)
T KOG0300|consen 296 ANLWDVETGEVVN-------------------------------ILTGHDSELTHCSTHPTQRLVVTSSRD--------- 335 (481)
T ss_pred ceeeeeccCceec-------------------------------cccCcchhccccccCCcceEEEEeccC---------
Confidence 9999999986321 122455667788889998888887776
Q ss_pred cceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceEEEec
Q 010051 249 INSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIAILAG 327 (519)
Q Consensus 249 ~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~ 327 (519)
...++||++..-..+..+.+|...|+++.|.-+ ..+++|+.|.+|++||+++. .++.++..
T Consensus 336 -tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-----------------d~vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 336 -TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-----------------DRVVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred -ceeEeccchhhcceeeeecccccceeEEEEecC-----------------CceeecCCCceEEEeeeccccCcceeeec
Confidence 689999999777778889999999999999987 45899999999999999985 46677775
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCcc--EEEeecCCce-eee
Q 010051 328 LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDM--IIEASTNDKL-VTA 404 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~d~~-i~~ 404 (519)
..+++.++.+..+..|+.--.+..|++||++...+...-. .....+..-|.|++|..+.. -|.+++-|.. +-|
T Consensus 398 --dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr--tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 398 --DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR--TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred --CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc--ccccccceeeeeeeccccCcccccccccccceeeee
Confidence 7899999999999999999888999999998764432110 11123346788888887652 2344444444 455
Q ss_pred c
Q 010051 405 E 405 (519)
Q Consensus 405 ~ 405 (519)
.
T Consensus 474 ~ 474 (481)
T KOG0300|consen 474 K 474 (481)
T ss_pred E
Confidence 4
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.3e-24 Score=173.60 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=188.1
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC--eEEEeeCCCeEEE
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK--YVASLSSDRTCRI 171 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~i 171 (519)
..+..+..|.+.|++++.+ +.++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.++.. .|++|+.||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 4567778899999999998 99999999999999999999999999999999999999998764 8999999999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
|+...-.. +-....|.+.|+.++.+|.|+..++.+++ ..
T Consensus 112 w~~~~W~~-------------------------------~~slK~H~~~Vt~lsiHPS~KLALsVg~D----------~~ 150 (362)
T KOG0294|consen 112 WRVGSWEL-------------------------------LKSLKAHKGQVTDLSIHPSGKLALSVGGD----------QV 150 (362)
T ss_pred EEcCCeEE-------------------------------eeeecccccccceeEecCCCceEEEEcCC----------ce
Confidence 99876421 22233566779999999999999998888 68
Q ss_pred EEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc
Q 010051 252 AYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA 331 (519)
Q Consensus 252 i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 331 (519)
++.||+-++......--.+ ..+.+.|+|.|.+++.+.. +.|-+|.+.+......+.. ..
T Consensus 151 lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~-----------------~~i~i~q~d~A~v~~~i~~--~~ 209 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGR-----------------NKIDIYQLDNASVFREIEN--PK 209 (362)
T ss_pred eeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEec-----------------cEEEEEecccHhHhhhhhc--cc
Confidence 9999987654333222222 2344999999965433333 3589999998877776664 35
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCccc--ccCCccEEEeecCCcee-eecCCC
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLV--TKSEDMIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~~~~~d~~i-~~~~~~ 408 (519)
.+.++.|- ++.+|++|+.|+.|++||.++.. ....+.+|. ..|-.+. -.|++.+|++++.||.| +|+...
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~--~~~~~~AH~----~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDT--PLTEFLAHE----NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCc--cceeeecch----hheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 57777775 56689999999999999998742 333344444 3455554 34678999999988888 777665
Q ss_pred CC
Q 010051 409 PD 410 (519)
Q Consensus 409 ~~ 410 (519)
..
T Consensus 283 ~~ 284 (362)
T KOG0294|consen 283 ET 284 (362)
T ss_pred cc
Confidence 44
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=185.88 Aligned_cols=227 Identities=19% Similarity=0.242 Sum_probs=184.6
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL------------------------------------------- 116 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL------------------------------------------- 116 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHH-------------------------------------------
Confidence 3578999999999999999989999999999998743
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CceEEEecccccCeEEEEEcCC--CCeE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK---------GSVLQILDAHFHYVQGVAWDPL--SKYV 160 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~--~~~l 160 (519)
..+.+|-..|+|+.|+-||.+|++|+.||.|.+|++.. -+.++.+..|.-+|+++...+. ..+|
T Consensus 117 -----~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 117 -----NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred -----HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 33345889999999999999999999999999998742 3567889999999999998754 4689
Q ss_pred EEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 161 ASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
+|+|.|.++++||+..+... ....++..+.+++.+|.++.+++|+.++
T Consensus 192 ~TaS~D~t~k~wdlS~g~LL--------------------------------lti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGVLL--------------------------------LTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred EEecCCceEEEEEeccceee--------------------------------EEEecCCcceeEEEcccccEEEecCCcc
Confidence 99999999999999887532 2223456788999999999999999885
Q ss_pred ceeeeecccceEEEEeccCCC---------------cccccCCCCCC--CeEEEEEcCCcccccccCCCCcccccceEEE
Q 010051 241 KISSMSESINSAYIFSRKDLS---------------RPALQLPGASK--PVVAVRFCPLAFNLRESNSAGFFKLPYRLIF 303 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~~~---------------~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~ 303 (519)
.|++.++.... ..+..+.+|.+ .|+|++++-|| ..++
T Consensus 240 ----------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg----------------tlLl 293 (476)
T KOG0646|consen 240 ----------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG----------------TLLL 293 (476)
T ss_pred ----------eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc----------------cEEE
Confidence 44444433221 22345668887 99999999998 6688
Q ss_pred EEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEE
Q 010051 304 AIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYL 345 (519)
Q Consensus 304 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 345 (519)
+|+.||.++|||+.+.++++++.. ..++|+.+.+.|-.+-.
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~-~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQT-SKGPVTNLQINPLERGI 334 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhh-hccccceeEeeccccce
Confidence 888888999999999999998885 57899999997754433
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.2e-23 Score=180.99 Aligned_cols=255 Identities=15% Similarity=0.211 Sum_probs=193.4
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc----------eEEEecccccCeEEEEEcCCC-CeEEEeeCCCe
Q 010051 101 FHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGS----------VLQILDAHFHYVQGVAWDPLS-KYVASLSSDRT 168 (519)
Q Consensus 101 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~ 168 (519)
.|.+.|+.+.+.|.. ..+++++..+.|+|||..+-. .-..+.+|...-.++.|++.. -.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 389999999999965 466677888999999986521 112678898877889999854 46899999999
Q ss_pred EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecc
Q 010051 169 CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~ 248 (519)
|++||+........ ..........|...|..++|+|-...++.+.+++
T Consensus 202 i~lwdi~~~~~~~~------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd-------- 249 (422)
T KOG0264|consen 202 ICLWDINAESKEDK------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD-------- 249 (422)
T ss_pred EEEEeccccccCCc------------------------cccceEEeecCCcceehhhccccchhhheeecCC--------
Confidence 99999987543200 0111233346778899999999766666555443
Q ss_pred cceEEEEeccC-CCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceEEEe
Q 010051 249 INSAYIFSRKD-LSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIAILA 326 (519)
Q Consensus 249 ~~~i~i~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~ 326 (519)
+.+.|||.+. ..++.....+|...|+|++|+|-+. ..|++|+.|++|++||+++. .++..+.
T Consensus 250 -~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~---------------~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 250 -GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE---------------FILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred -CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC---------------ceEEeccCCCcEEEeechhcccCceecc
Confidence 7999999986 4566677889999999999999764 34888888999999999974 5778888
Q ss_pred ccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecCCcccce------------eeecCCcccccCCCCcccccCCccEE
Q 010051 327 GLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFENDELGIP------------ISLSGNKVSKDENKSPLVTKSEDMII 393 (519)
Q Consensus 327 ~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~~~~l 393 (519)
+ |...|.++.|||.. ..||+++.|+.+.|||+..-.-... +...|| ...|..+.|+|...++
T Consensus 314 ~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH----~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 314 G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH----TAKVSDFSWNPNEPWT 388 (422)
T ss_pred C-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc----ccccccccCCCCCCeE
Confidence 8 99999999999975 6899999999999999975432221 333334 3578999999998665
Q ss_pred -EeecCCcee-eecCCC
Q 010051 394 -EASTNDKLV-TAETKE 408 (519)
Q Consensus 394 -~~~~~d~~i-~~~~~~ 408 (519)
++.++|+.+ +|...+
T Consensus 389 I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 389 IASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEecCCceEEEeeccc
Confidence 555666666 776554
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=171.26 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=200.2
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCccccee
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV 95 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~ 95 (519)
-.|+.||+.|.+||+|..||.|.|||+.+.. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------------------------i 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------------------------I 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc------------------------------------------------h
Confidence 7899999999999999999999999998654 2
Q ss_pred eeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCe-EEEeeCCCeEEEEec
Q 010051 96 LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKY-VASLSSDRTCRIYAN 174 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~ 174 (519)
.+.+.+|..+|++++||+||+.|++++.|..|.+||+..|.+++.+.- .++|+.+.|+|.... +++.-.+..-.+-++
T Consensus 58 ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 58 ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 344566999999999999999999999999999999999999888874 589999999986543 333323333444444
Q ss_pred CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEE
Q 010051 175 RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254 (519)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i 254 (519)
........... ..........+..|.+.|+++++|++. |.+.+
T Consensus 137 s~~~h~~Lp~d---------------------------~d~dln~sas~~~fdr~g~yIitGtsK----------Gkllv 179 (405)
T KOG1273|consen 137 SDPKHSVLPKD---------------------------DDGDLNSSASHGVFDRRGKYIITGTSK----------GKLLV 179 (405)
T ss_pred cCCceeeccCC---------------------------CccccccccccccccCCCCEEEEecCc----------ceEEE
Confidence 33221100000 000111112234688999999999888 68888
Q ss_pred EeccCCCcccccCCCCC-CCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-------Cce--EE
Q 010051 255 FSRKDLSRPALQLPGAS-KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-------PPI--AI 324 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-------~~~--~~ 324 (519)
|+..+. .++..+.-.. ..|..+.|+..| ++++.-+.|..|+.|+++.- ++. ..
T Consensus 180 ~~a~t~-e~vas~rits~~~IK~I~~s~~g----------------~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 180 YDAETL-ECVASFRITSVQAIKQIIVSRKG----------------RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred Eecchh-eeeeeeeechheeeeEEEEeccC----------------cEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence 888654 4444444333 577888888887 67888889999999998621 111 11
Q ss_pred Eec-cccccEEEEEEcCCCCEEEEEeCC-CcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 325 LAG-LHYAAITDIAWSNNARYLALSSQD-GYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 325 ~~~-~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
+.. .....=.+++||.+|.|++.++.- ..++||.-..+.+.+.+ .|.. +.....+.|.|--..+++-..+..-
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL--hG~k---gE~l~DV~whp~rp~i~si~sg~v~ 317 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL--HGTK---GEELLDVNWHPVRPIIASIASGVVY 317 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee--cCCc---hhheeecccccceeeeeeccCCceE
Confidence 111 012233578999999998877643 56999998888665443 3333 3566778899988888888777666
Q ss_pred eecCCC
Q 010051 403 TAETKE 408 (519)
Q Consensus 403 ~~~~~~ 408 (519)
+|....
T Consensus 318 iw~~~~ 323 (405)
T KOG1273|consen 318 IWAVVQ 323 (405)
T ss_pred EEEeec
Confidence 777554
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-22 Score=182.79 Aligned_cols=288 Identities=15% Similarity=0.153 Sum_probs=224.9
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
-..+|+|||||.+.+.||.+-.+|.|-||++..+-..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~------------------------------------------- 60 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL------------------------------------------- 60 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCcee-------------------------------------------
Confidence 4578999999999999999999999999998764211
Q ss_pred cceeeeccc-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEE
Q 010051 92 AWKVLKNLS-FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCR 170 (519)
Q Consensus 92 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~ 170 (519)
...+. +....|.+++|+ ++..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+..++.|+.||.+.
T Consensus 61 ----~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 61 ----EPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY 135 (691)
T ss_pred ----eEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEE
Confidence 11111 245679999999 456788999999999999999999999999999999999999999999999999877
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESIN 250 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 250 (519)
.++...++......+ ....+.+.+++|+|++..++.|+.+ +
T Consensus 136 ~~s~~p~~I~~~r~l-----------------------------~rq~sRvLslsw~~~~~~i~~Gs~D----------g 176 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSL-----------------------------MRQKSRVLSLSWNPTGTKIAGGSID----------G 176 (691)
T ss_pred EEecCCceEEEEeec-----------------------------ccccceEEEEEecCCccEEEecccC----------c
Confidence 777766542211111 1224778899999999999999988 6
Q ss_pred eEEEEeccCCCccc------ccCCC-CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE
Q 010051 251 SAYIFSRKDLSRPA------LQLPG-ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA 323 (519)
Q Consensus 251 ~i~i~~~~~~~~~~------~~~~~-~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 323 (519)
.|++||........ ..+.. ...-|+++.|-.+ ..+++|..-|+|.+||...+.++.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----------------~tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----------------STIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----------------CcEEEecCCceEEEEcccCcchhh
Confidence 89999987654332 11111 3335677777665 368888888999999999999999
Q ss_pred EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceee
Q 010051 324 ILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVT 403 (519)
Q Consensus 324 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 403 (519)
.+.. |...|.+++.++++.++++++.|+.|..+...+.... |........+...+.+++..++ .+.+|+.|..++
T Consensus 240 S~~~-h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 240 SHSC-HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred hhhh-hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeeccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 9999 9999999999999999999999999999988776432 4443444445567888888887 888888888885
Q ss_pred ecCCC
Q 010051 404 AETKE 408 (519)
Q Consensus 404 ~~~~~ 408 (519)
.....
T Consensus 315 i~~s~ 319 (691)
T KOG2048|consen 315 ICSSR 319 (691)
T ss_pred Ecccc
Confidence 54443
No 130
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.8e-24 Score=192.59 Aligned_cols=238 Identities=16% Similarity=0.230 Sum_probs=189.7
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEcCCCc------eEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcc
Q 010051 108 DLQWS-TDGAFLLSGSVDNSCIIWDVNKGS------VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSK 180 (519)
Q Consensus 108 ~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 180 (519)
.+..+ |.+++|++|++||.|++|++..-. .+..+..|...|..+....+++.|+++|.|-+|++|+.......
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34443 356789999999999999986532 36678899999999999999999999999999999998765310
Q ss_pred ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEE-ccCCCeEEEecCCcceeeeecccceEEEEeccC
Q 010051 181 GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAW-SPDGSFLLVPAGSYKISSMSESINSAYIFSRKD 259 (519)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~ 259 (519)
.+-....|..+|.++++ -++...+++++-+ +.|++||+..
T Consensus 109 -----------------------------c~stir~H~DYVkcla~~ak~~~lvaSgGLD----------~~IflWDin~ 149 (735)
T KOG0308|consen 109 -----------------------------CMSTIRTHKDYVKCLAYIAKNNELVASGGLD----------RKIFLWDINT 149 (735)
T ss_pred -----------------------------hHhhhhcccchheeeeecccCceeEEecCCC----------ccEEEEEccC
Confidence 01122367889999999 6666666666655 6999999985
Q ss_pred CCc---------ccccCC-CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccc
Q 010051 260 LSR---------PALQLP-GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLH 329 (519)
Q Consensus 260 ~~~---------~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 329 (519)
... ....+. ++..+|++++..+.| ..+++|+..+.|++||.++.+.+..+.+ |
T Consensus 150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~----------------t~ivsGgtek~lr~wDprt~~kimkLrG-H 212 (735)
T KOG0308|consen 150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG----------------TIIVSGGTEKDLRLWDPRTCKKIMKLRG-H 212 (735)
T ss_pred cchhhhhhccccccccCCCCCccceeeeecCCcc----------------eEEEecCcccceEEeccccccceeeeec-c
Confidence 421 122233 788889999999887 4578888888999999999999999998 9
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCC
Q 010051 330 YAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETK 407 (519)
Q Consensus 330 ~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~ 407 (519)
...|..+..++||..+++++.||+|++||+........ ...| ...++++..+|+=..+.+|+.|+.|+-...
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--~~vH----~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--YIVH----KEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--EEec----cCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 99999999999999999999999999999987654433 3333 356999999999999999999999854433
No 131
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=1.3e-23 Score=187.82 Aligned_cols=163 Identities=28% Similarity=0.377 Sum_probs=122.4
Q ss_pred eeEEecCCCCCEEEEEEecCC-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------
Q 010051 5 TLQINWHDTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-------- 75 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------- 75 (519)
.+.++.+|++.|+.+.|+|-. .+||+|+.|..|+||.+..|-... +. .....+.+..-.|.++.|.|.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LS--ape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-LS--APEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-cC--CcceeecCCceEEEEeecccCcCceEEec
Confidence 456778899999999999954 488999999999999998543221 11 112223334455677777775
Q ss_pred -CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceEEEecccccC-eEEEE
Q 010051 76 -GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK-GSVLQILDAHFHY-VQGVA 152 (519)
Q Consensus 76 -~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~-v~~~~ 152 (519)
.|.++|||+.++ +.+..+.+|...|.++.|+.||..|++.+.|.+|+|||.+. ++.++...+|.+. =..+.
T Consensus 148 a~g~v~i~D~stq------k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~ 221 (1012)
T KOG1445|consen 148 AHGSVYITDISTQ------KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVL 221 (1012)
T ss_pred cCceEEEEEcccC------ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheee
Confidence 589999999988 67888999999999999999999999999999999999875 5677777888542 23456
Q ss_pred EcCCCCeEEEeeCC----CeEEEEecCC
Q 010051 153 WDPLSKYVASLSSD----RTCRIYANRP 176 (519)
Q Consensus 153 ~~~~~~~l~~~~~d----g~i~iwd~~~ 176 (519)
|.-+-..|++.+.+ ..+++||.+.
T Consensus 222 w~Gn~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 222 WAGNWERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred eccchhhhhhcccchhhheeeeeeeccc
Confidence 66444456665544 4577777664
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=178.94 Aligned_cols=289 Identities=18% Similarity=0.258 Sum_probs=212.9
Q ss_pred EecCCCCCEEEEEEecCCC--EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------
Q 010051 8 INWHDTKPVLTLDFHPISG--LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------- 75 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------- 75 (519)
...-|.++|++++|+|..+ ++|+|..-|.|-+||+.+.+.... ...-+..|...|.++.|+|.
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-----~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-----GVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC-----ceEEeccCCccccceEecCCChhheeeecc
Confidence 3345789999999999865 889999999999999963332211 12235669999999999997
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-EEEecccccCeEEEEEc
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV-LQILDAHFHYVQGVAWD 154 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~ 154 (519)
||+|++-|++.... ..+..+......+..+.|+.+...++.+..=|...+||++++.. ...+..|...|..++++
T Consensus 256 DGtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 256 DGTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred Cceeeeeeecchhh----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 69999999986532 33444444556678889998888888888878999999998654 66677888999999999
Q ss_pred CCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeE
Q 010051 155 PLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFL 233 (519)
Q Consensus 155 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 233 (519)
|.. .+|+|++.|++.+|||++....... .++....|...|.++.|||.+-.|
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------------------p~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS---------------------------PFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC---------------------------cceecccccceeeeeEEcCCCCce
Confidence 964 5689999999999999998643221 134555778889999999998889
Q ss_pred EEecCCcceeeeecccceEEEEecc---CCCcccccCCCCC------CCeEEEEEcCCcccccccCCCCcccccceEEEE
Q 010051 234 LVPAGSYKISSMSESINSAYIFSRK---DLSRPALQLPGAS------KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA 304 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~~------~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~ 304 (519)
++.+.+ +.|+|||.. ....+...+. |. -......|.|+. ++++.
T Consensus 385 ~TT~~D----------~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~----------------~li~v 437 (498)
T KOG4328|consen 385 LTTCQD----------NEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDY----------------NLIVV 437 (498)
T ss_pred EeeccC----------CceEEeecccccccCCccceee-ccCcccccccchhheeCCCc----------------cEEEE
Confidence 988877 689999974 2222222222 21 123456899976 55666
Q ss_pred EecCCeEEEEeCCCCCceEEEeccccccEEE-EEEcCCCCEEEEE-eCCCcEEEEEe
Q 010051 305 IATLNSLYIYDTESVPPIAILAGLHYAAITD-IAWSNNARYLALS-SQDGYCTLVEF 359 (519)
Q Consensus 305 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~~~-~~dg~i~vwd~ 359 (519)
|-.-..|-|||...++.+..+.......|.+ ..|+|-+..+++| +..|.|+||--
T Consensus 438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 6667789999999888888876533335555 4799998855554 55688888754
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.3e-23 Score=168.82 Aligned_cols=280 Identities=19% Similarity=0.155 Sum_probs=171.3
Q ss_pred eeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceE--EEe--cccccCeEEEEEcCCCCeEE-EeeCCCeEE
Q 010051 96 LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL--QIL--DAHFHYVQGVAWDPLSKYVA-SLSSDRTCR 170 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~--~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~ 170 (519)
+..+.+|...|++++|+.||++|++++.|+.|++|+++.-... +.+ .-.-+..+.++|.||-+-++ ++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4567899999999999999999999999999999998752110 000 00011235556666554333 233334455
Q ss_pred EEecCCCCc---------cc---cccccceeeEEEec--cCcccccCCccccceeeec--------CCCcceeeEEEEcc
Q 010051 171 IYANRPTKS---------KG---VEKMNYVCQHVITK--AGQHSTDDSKSAKNHLFHD--------ETLPSFFRRLAWSP 228 (519)
Q Consensus 171 iwd~~~~~~---------~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~sp 228 (519)
+|.+...+- .. +..........+.. ....+...+......+|.. ......-+..+.||
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence 554332110 00 00000000000100 1111111111112222211 12233345789999
Q ss_pred CCCeEEEecCCcceeeeecccceEEEEeccCC-------CcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 229 DGSFLLVPAGSYKISSMSESINSAYIFSRKDL-------SRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 229 ~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
+|+++++++-. ..+++|..--. -..+..+.+|...|..++|+|+. ..
T Consensus 239 ~GRFia~~gFT----------pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S----------------~r 292 (420)
T KOG2096|consen 239 DGRFIAVSGFT----------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS----------------TR 292 (420)
T ss_pred CCcEEEEecCC----------CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc----------------ce
Confidence 99999998765 57777865211 13456788999999999999988 66
Q ss_pred EEEEecCCeEEEEeCCC-------CCceEEEec---cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeec
Q 010051 302 IFAIATLNSLYIYDTES-------VPPIAILAG---LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~-------~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
+++.+.||++++||..- .+.+..... .-.+.-..+.++|+|+.||.+. ...+.++..+.++....
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~---- 367 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE---- 367 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh----
Confidence 88999999999999762 122222210 0123334899999999998764 56799999887643222
Q ss_pred CCcccccCCCCcccccCCccEEEeecCCceeeecCC
Q 010051 372 GNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETK 407 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~ 407 (519)
....+...+.+++|+++|++++++++....+..+.
T Consensus 368 -~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~nt 402 (420)
T KOG2096|consen 368 -LEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNT 402 (420)
T ss_pred -HHHhhcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence 22345789999999999999999999877766543
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.4e-24 Score=192.98 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=216.3
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCcccccc--c------cccccccccccCcceeEEEEccCCCeEEEEEc
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKI--P------TASYQNSLSYHGSAINILRFSPCGGELIIWKL 84 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~--~------~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~ 84 (519)
.....+|+..++-..++.++.. .++||.+......... . .........++...-+.|+.....|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 4567788888888888888754 5888876543221111 0 00011223344555566677777899999999
Q ss_pred ccCCCcccceeeeccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC-CCCeEEE
Q 010051 85 HTTETGQAWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP-LSKYVAS 162 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~ 162 (519)
...... +.+..+..|...+++++|++. ..+|++|+.||+|++||++..+...++.+....|+.+.|+| .+.+|++
T Consensus 118 nk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 118 NKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred Cccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence 863111 566778889999999999985 56889999999999999999988888888889999999998 4778999
Q ss_pred eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
+...|.+++||++.... .......|.++|.++.|+|++.+||+|+.+
T Consensus 195 ~~dsG~lqlWDlRqp~r------------------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRD--- 241 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDR------------------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRD--- 241 (839)
T ss_pred ecCCceEEEeeccCchh------------------------------HHHHhhcccCceEEEeecCCCceeeecCCC---
Confidence 99999999999997642 123334678999999999999999999877
Q ss_pred eeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe--cCCeEEEEeCCCCC
Q 010051 243 SSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA--TLNSLYIYDTESVP 320 (519)
Q Consensus 243 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~--~d~~i~vwd~~~~~ 320 (519)
..++||++.+.............+|.+++|-|...+. |++++ .|-.|+|||++..-
T Consensus 242 -------K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h---------------LAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 242 -------KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH---------------LATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred -------ccEEEEeccCCCccceeEEeecceeeeeeeccCccch---------------hhhhhccccceEEEEeecccc
Confidence 6999999975433222223445789999999988653 33332 36689999998764
Q ss_pred -ceEEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEecCC
Q 010051 321 -PIAILAGLHYAAITDIAWSN-NARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 321 -~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
+..++.. |...++.++|.. |-..|.+++.||+|..-.+++.
T Consensus 300 IP~~t~~e-H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 300 IPYATFLE-HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccceeeec-cCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 4566667 999999999965 4457889999999877666543
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.6e-23 Score=182.05 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=209.7
Q ss_pred cccCcceeEEEEccC--------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 010051 61 SYHGSAINILRFSPC--------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132 (519)
Q Consensus 61 ~~~~~~v~~~~~~~~--------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 132 (519)
-.|..-|.++.++.. .|.|+|||+...........+-.+. ....|+++.+.|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceeeeeec
Confidence 357888888888765 3789999998664332222222222 4567899999999999999999999999999
Q ss_pred CCCceE--EEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccce
Q 010051 133 NKGSVL--QILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNH 210 (519)
Q Consensus 133 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (519)
...... ..+.........++.+||.+..+++..||.|.|||+.+.. .
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-------------------------------~ 543 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-------------------------------L 543 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-------------------------------e
Confidence 875443 3344444567788999999999999999999999998753 1
Q ss_pred eeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccC
Q 010051 211 LFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESN 290 (519)
Q Consensus 211 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 290 (519)
+.....|...+.++.+++||..|-+++-+ +.++-||+++..++.. ......|.++-++|.+
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlD----------ntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~------- 604 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLD----------NTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTG------- 604 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCc----------cceeehhhhhhhhhhh--hhhhhhheecccCCCc-------
Confidence 33445677888899999999999998877 7999999987543322 2345789999999998
Q ss_pred CCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeee
Q 010051 291 SAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISL 370 (519)
Q Consensus 291 ~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 370 (519)
.+++.|..++.+.|.... +...+.+.. |..-|.++.|.+.|+++++.+.|..+..|...-+... +..
T Consensus 605 ---------dWlavGMens~vevlh~s-kp~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi--Fqs 671 (705)
T KOG0639|consen 605 ---------DWLAVGMENSNVEVLHTS-KPEKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQS 671 (705)
T ss_pred ---------cceeeecccCcEEEEecC-Cccceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccce--eec
Confidence 567777777788888765 444556666 9999999999999999999999999999998765322 221
Q ss_pred cCCcccccCCCCcccccCCccEEEeecCCc
Q 010051 371 SGNKVSKDENKSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 400 (519)
+ ....|.++..|.|+++|++|+.|+
T Consensus 672 k-----E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 672 K-----ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred c-----ccCcceeeeeccCceEEEecCCCc
Confidence 1 246889999999999999999884
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.5e-25 Score=198.92 Aligned_cols=201 Identities=18% Similarity=0.281 Sum_probs=170.3
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEec
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 174 (519)
.+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.++.++.+.+|...+..+.|+|-+.+++.++.|+.+++||.
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 44457889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEE
Q 010051 175 RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254 (519)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i 254 (519)
+... .
T Consensus 142 Rk~G------------------------------------------------------------------------c--- 146 (825)
T KOG0267|consen 142 RKKG------------------------------------------------------------------------C--- 146 (825)
T ss_pred hccC------------------------------------------------------------------------c---
Confidence 7431 1
Q ss_pred EeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEE
Q 010051 255 FSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAIT 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 334 (519)
...+.+|...+..+.|+|+| ++++.++.|..++|||+..|+....|.. |.+.+.
T Consensus 147 ---------~~~~~s~~~vv~~l~lsP~G----------------r~v~~g~ed~tvki~d~~agk~~~ef~~-~e~~v~ 200 (825)
T KOG0267|consen 147 ---------SHTYKSHTRVVDVLRLSPDG----------------RWVASGGEDNTVKIWDLTAGKLSKEFKS-HEGKVQ 200 (825)
T ss_pred ---------eeeecCCcceeEEEeecCCC----------------ceeeccCCcceeeeeccccccccccccc-cccccc
Confidence 11223466677888899988 5567777778999999999999999999 999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 335 DIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 335 ~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
.+.|+|..-+|++|+.|+++++||+++-++... .......+.++.|+|++..+++|.....-
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s------~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS------GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeec------cCCccCCceeeeecCCceeeecCchhhhh
Confidence 999999999999999999999999976533211 11124689999999999999998766554
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.4e-22 Score=165.17 Aligned_cols=232 Identities=16% Similarity=0.216 Sum_probs=177.2
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE 88 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~ 88 (519)
...|.++|.+++|+.||..+++|+.|+.+++||+.+++..
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---------------------------------------- 107 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS---------------------------------------- 107 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----------------------------------------
Confidence 4568999999999999999999999999999999988532
Q ss_pred CcccceeeeccccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWSTDGA--FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 166 (519)
.+..|..+|.++.|-+... .|+||+.|.+|+.||.+...++.++... ..+.++..- ...++++..+
T Consensus 108 ---------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv~--~pm~vVata~ 175 (347)
T KOG0647|consen 108 ---------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADVL--YPMAVVATAE 175 (347)
T ss_pred ---------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhcc--CceeEEEecC
Confidence 1223888899998877554 7999999999999999998888877643 556666543 4578888899
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~ 246 (519)
..|.+|+++.+..... .....+.-.+++++..++....+.++-.
T Consensus 176 r~i~vynL~n~~te~k-----------------------------~~~SpLk~Q~R~va~f~d~~~~alGsiE------- 219 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFK-----------------------------RIESPLKWQTRCVACFQDKDGFALGSIE------- 219 (347)
T ss_pred CcEEEEEcCCCcchhh-----------------------------hhcCcccceeeEEEEEecCCceEeeeec-------
Confidence 9999999977542111 0111234557789999988888887766
Q ss_pred cccceEEEEeccCCC-cccccCCCC---------CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 247 ESINSAYIFSRKDLS-RPALQLPGA---------SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~-~~~~~~~~~---------~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
|.+.+..+.... ..-..+.-| -..|++|+|+|.. ..+++++.||++.+||-
T Consensus 220 ---Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h----------------gtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 220 ---GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH----------------GTLVTAGSDGTFSFWDK 280 (347)
T ss_pred ---ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc----------------ceEEEecCCceEEEecc
Confidence 455555554421 111222222 2368899999965 67899999999999999
Q ss_pred CCCCceEEEeccccccEEEEEEcCCCCEEEEE
Q 010051 317 ESVPPIAILAGLHYAAITDIAWSNNARYLALS 348 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 348 (519)
+....+..... |..+|++++|+.+|.++|-+
T Consensus 281 dar~kLk~s~~-~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 281 DARTKLKTSET-HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred hhhhhhhccCc-CCCccceeEecCCCCEEEEE
Confidence 88888888888 99999999999999998865
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.9e-23 Score=176.03 Aligned_cols=276 Identities=13% Similarity=0.183 Sum_probs=209.4
Q ss_pred cCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEc
Q 010051 63 HGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGA-FLLSGSVDNSCIIWDV 132 (519)
Q Consensus 63 ~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~ 132 (519)
..+.|+++.|.|. |+.++||.+..... ..++.+.-...+|.+++|.|+|. .+++++....++.||+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 3467888888887 79999999875433 35556666778999999999998 8999999999999999
Q ss_pred CCCceEE--Eecccc-cCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccc
Q 010051 133 NKGSVLQ--ILDAHF-HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKN 209 (519)
Q Consensus 133 ~~~~~~~--~~~~h~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (519)
.+.+... .+.++. ..+..+..++++++|+..+..|.|.+.-..+++.....
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-------------------------- 341 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-------------------------- 341 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--------------------------
Confidence 9876532 333443 45778889999999999999999999988777643222
Q ss_pred eeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCC-CCCeEEEEEcCCcccccc
Q 010051 210 HLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGA-SKPVVAVRFCPLAFNLRE 288 (519)
Q Consensus 210 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~ 288 (519)
...+.|..++|+.+|+.|+++++. +.|++||++.. .++..+... .-.-+.++.++++
T Consensus 342 ------KieG~v~~~~fsSdsk~l~~~~~~----------GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng----- 399 (514)
T KOG2055|consen 342 ------KIEGVVSDFTFSSDSKELLASGGT----------GEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNG----- 399 (514)
T ss_pred ------eeccEEeeEEEecCCcEEEEEcCC----------ceEEEEecCCc-ceEEEEeecCccceeeeeecCCC-----
Confidence 335778899999999999998887 69999999865 334433322 2233566666777
Q ss_pred cCCCCcccccceEEEEEecCCeEEEEeCCC------CCceEEEeccccccEEEEEEcCCCCEEEEEeC--CCcEEEEEec
Q 010051 289 SNSAGFFKLPYRLIFAIATLNSLYIYDTES------VPPIAILAGLHYAAITDIAWSNNARYLALSSQ--DGYCTLVEFE 360 (519)
Q Consensus 289 ~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--dg~i~vwd~~ 360 (519)
.++++|+..|.|.|||..+ .+++..+.. -...|++|.|++|+++||.+|. +..+++-.+.
T Consensus 400 -----------~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 400 -----------SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred -----------ceEEeccCcceEEEeccchhhccCCCCchhhhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 4566666777999999653 456666666 6678999999999999988874 4779998887
Q ss_pred CCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eec
Q 010051 361 NDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAE 405 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~ 405 (519)
+-..-.-++..... -+.++|++|||.+.++|.|..++.+ +|.
T Consensus 468 S~TVFsNfP~~n~~---vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTK---VGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred ceeeeccCCCCCCc---ccceEEEEecCCCceEEeecCCCceeeEe
Confidence 76444444443333 4789999999999999999998887 554
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.8e-21 Score=175.59 Aligned_cols=363 Identities=18% Similarity=0.180 Sum_probs=235.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccc-cCcceeEEEEccCC--------CeEEE
Q 010051 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSY-HGSAINILRFSPCG--------GELII 81 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~i~v 81 (519)
..+++|.+++|+|++..||+|+.||.|++||..++..+..+.. ....+.. ...-|.++.|..++ |+|++
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTF 229 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cccccccCCceEEEEEEEeecCcEEEecCCceEEE
Confidence 3568999999999999999999999999999999887662211 1112222 34456777776653 99999
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce----EEEecccccCeEEEEEcCCC
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV----LQILDAHFHYVQGVAWDPLS 157 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~ 157 (519)
||...+ ..++.+..|...|.+++..+++.++++++.|+.|..|...++.. ......|...|.+++..++
T Consensus 230 Wd~~~g------TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 230 WDSIFG------TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred EcccCc------chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence 999888 67777888999999999999999999999999999999876633 2233578889999999876
Q ss_pred CeEEEeeCCCeEEEEecCCCCccccc---cccceeeEEEecc----------Cc-------ccccCCccccceeeecCCC
Q 010051 158 KYVASLSSDRTCRIYANRPTKSKGVE---KMNYVCQHVITKA----------GQ-------HSTDDSKSAKNHLFHDETL 217 (519)
Q Consensus 158 ~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~----------~~-------~~~~~~~~~~~~~~~~~~~ 217 (519)
.+++|+.|..+.+-..+..+..... ..+..+....... +. ....+.......+......
T Consensus 303 -~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 303 -ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred -eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC
Confidence 8999999999888766653221111 1111111111100 00 0000000111111111223
Q ss_pred cceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccc----ccCCCCCCCeEEEEEcCCcccccccCCCC
Q 010051 218 PSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA----LQLPGASKPVVAVRFCPLAFNLRESNSAG 293 (519)
Q Consensus 218 ~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~g 293 (519)
...|.+.+.||+|++|+.++-. ..++|.+....... ...+...-....+.|+-++
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~-----------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~---------- 440 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS-----------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDK---------- 440 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc-----------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecC----------
Confidence 4668899999999999997754 66677665322111 1112222355667777766
Q ss_pred cccccceEEEEEe-cCCeEEEEeCCCCCc--eEEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceee
Q 010051 294 FFKLPYRLIFAIA-TLNSLYIYDTESVPP--IAILAG-LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPIS 369 (519)
Q Consensus 294 ~~~~~~~~~~~~~-~d~~i~vwd~~~~~~--~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~ 369 (519)
+.++.++ ....+.++++.+... +..+.. .....|+.+..||+|+|||+.+.+|.|.+|++.+.+......
T Consensus 441 ------~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 441 ------NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred ------ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh
Confidence 3344444 667888888776432 222221 135679999999999999999999999999999876543331
Q ss_pred ecCCcccccCCCCcccccCC-ccEEEeec-CCceeeecCCCCCcccccc
Q 010051 370 LSGNKVSKDENKSPLVTKSE-DMIIEAST-NDKLVTAETKEPDKRKTEA 416 (519)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~-~~~l~~~~-~d~~i~~~~~~~~~~~~~~ 416 (519)
. ....++.++++|. -..|+.+. +......+...+....|..
T Consensus 515 r------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~ 557 (691)
T KOG2048|consen 515 R------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSK 557 (691)
T ss_pred c------cCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhh
Confidence 1 1246788888854 34454444 4444455554444444433
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=199.30 Aligned_cols=291 Identities=22% Similarity=0.327 Sum_probs=213.0
Q ss_pred EEEEEecCCC-EEEEEc----------CCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc-----------
Q 010051 17 LTLDFHPISG-LLATGG----------ADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP----------- 74 (519)
Q Consensus 17 ~~~~~sp~~~-~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------- 74 (519)
-.++|||++. +||+|. .+.++-||.+.-......++. .. -......-+.++|++
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~---~~-s~~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKP---VG-SLQSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccc---cc-cccccccceeeeecccCCCccceeec
Confidence 3578999997 666653 244566665432221110000 00 001223345555554
Q ss_pred --CCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEe--cccccCeE
Q 010051 75 --CGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQIL--DAHFHYVQ 149 (519)
Q Consensus 75 --~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~h~~~v~ 149 (519)
+||.|.+||...-........+.+...|.+.|..+.|++.. +.||+|+.||.|.|||+.+-+.-..+ ......|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 46889999987643344446777888899999999999965 59999999999999999875544333 22456899
Q ss_pred EEEEcCC-CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 150 GVAWDPL-SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 150 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
+++|+.. .+.|++++.+|.+.|||++..+... .+... .....+..++|+|
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii--~ls~~---------------------------~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPII--KLSDT---------------------------PGRMHCSVLAWHP 216 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCccc--ccccC---------------------------CCccceeeeeeCC
Confidence 9999864 5578899999999999999875321 11110 1113356899999
Q ss_pred CCC-eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec
Q 010051 229 DGS-FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 229 ~g~-~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
+.. .+++++++. ....|.+||++....+...+.+|...|.++.|++.+. +++++++.
T Consensus 217 ~~aTql~~As~dd-------~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~---------------~lllSsgk 274 (1049)
T KOG0307|consen 217 DHATQLLVASGDD-------SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP---------------RLLLSSGK 274 (1049)
T ss_pred CCceeeeeecCCC-------CCceeEeecccccCCchhhhcccccceeeeccCCCCc---------------hhhhcccC
Confidence 864 455555442 3368999999999999999999999999999999764 45788888
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEecCCc
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNAR-YLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~~ 363 (519)
|+.|.+|+..+++.+..+.. ....+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus 275 D~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999999988 888999999999876 78889999999999998654
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.9e-22 Score=166.26 Aligned_cols=313 Identities=14% Similarity=0.216 Sum_probs=207.9
Q ss_pred EEecCCCCCEEEEEEecC-----CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC------
Q 010051 7 QINWHDTKPVLTLDFHPI-----SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------ 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~-----~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 75 (519)
++...|..+|..++|++- -..+|+++. ..+.||.....-.++.++.. .-..|...-+.++|+-+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y----~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSY----ADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeec----cCCCCCcceEEEEEEecCCCCCe
Confidence 455678999999999852 346777765 46889987654422222110 01135666666777654
Q ss_pred -------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEe---ccc
Q 010051 76 -------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQIL---DAH 144 (519)
Q Consensus 76 -------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h 144 (519)
-|.|+|.|+.++ ++...+.+|...|+.+.|.|+. ++|++++.|..|++|++++..++..+ .+|
T Consensus 107 ~la~~G~~GvIrVid~~~~------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSG------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH 180 (385)
T ss_pred eEEeecceeEEEEEecchh------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc
Confidence 278999999888 7888899999999999999965 78999999999999999999998776 679
Q ss_pred ccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceee-ecCCCcceeeE
Q 010051 145 FHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF-HDETLPSFFRR 223 (519)
Q Consensus 145 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 223 (519)
.+.|.++.|++++.+|++++.|.+|++|++...+.......... +........-.........+ ....|..+|.+
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~----~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSIT----YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcc----cCCCCccCcCCccccccccccccccccchHHH
Confidence 99999999999999999999999999999986543222211100 00000000000000000111 22345666777
Q ss_pred EEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccc-------------ccCCCCCCCeEEEEEcCCcccccccC
Q 010051 224 LAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA-------------LQLPGASKPVVAVRFCPLAFNLRESN 290 (519)
Q Consensus 224 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-------------~~~~~~~~~v~~~~~sp~~~~l~~~~ 290 (519)
+.|- |.++++-+.+ +.|..|........+ ..+.-....++-+.|.-|-
T Consensus 257 vrw~--gd~ilSksce----------naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~------- 317 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCE----------NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP------- 317 (385)
T ss_pred HHHH--hhheeecccC----------ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-------
Confidence 7775 4677776665 466666552222111 1122223344545444321
Q ss_pred CCCcccccceEEEEEecCCeEEEEeCCCCCceE--EEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 291 SAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA--ILA-GLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 291 ~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~--~~~-~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+.+.++.|...|.|++||++..++.. ++. ......|...+||.||.+|+..+.|++|.-||.-
T Consensus 318 -------~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 318 -------WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 22567777777899999999876632 111 1124679999999999999999999999999863
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=180.75 Aligned_cols=289 Identities=18% Similarity=0.229 Sum_probs=199.6
Q ss_pred EEEEecCC---CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEEEEEcc
Q 010051 18 TLDFHPIS---GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELIIWKLH 85 (519)
Q Consensus 18 ~~~~sp~~---~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~vw~~~ 85 (519)
+..|++.. ..||.+..||.|.++|....... ...........|.+.|..+.|.|. |.++++||+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcc---hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 36676543 48999999999999998754432 011122345669999999999885 5889999998
Q ss_pred cCCCcccceeeec--cccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc--------------------------
Q 010051 86 TTETGQAWKVLKN--LSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGS-------------------------- 136 (519)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-------------------------- 136 (519)
.. .+... +.+|...|.+++|.|+. ..|++|+.||.|.|||++-..
T Consensus 131 ~s------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 131 TS------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred cc------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 77 34444 77899999999999965 578899999999999986321
Q ss_pred -eEEEecccccCeEE---EEEcCCCCeEEEeeC-CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCcccccee
Q 010051 137 -VLQILDAHFHYVQG---VAWDPLSKYVASLSS-DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHL 211 (519)
Q Consensus 137 -~~~~~~~h~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (519)
.+.....+...|.+ +.+..|...|++++. |+.|+|||++............. ...
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~--------------------~~~ 264 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS--------------------DKY 264 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc--------------------cCc
Confidence 01112234445555 556678889999888 99999999998653211110000 000
Q ss_pred eecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC-cccccCCCCCCCe--EEEEEcCCcccccc
Q 010051 212 FHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS-RPALQLPGASKPV--VAVRFCPLAFNLRE 288 (519)
Q Consensus 212 ~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~v--~~~~~sp~~~~l~~ 288 (519)
.....-...+.++.....|.+|++.+.| +.|+.|++.... .+...+.++...- ..-..+|++
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD----------~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~----- 329 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTD----------NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD----- 329 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecC----------CcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-----
Confidence 0001112345678888888999987776 799999997654 3334444443221 123457777
Q ss_pred cCCCCcccccceEEEEEecCCeEEEEeCCCCCce-EEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecCC
Q 010051 289 SNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI-AILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 289 ~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~ 362 (519)
.++++|+.|...++|.+.+.+.- ..+.+ |...|++++|.|.. .-+++++.|..+++|++.++
T Consensus 330 -----------~~l~SgSsd~~ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 -----------CSLLSGSSDEQAYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------ceEeccCCCcceeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 55777788889999999986644 44555 99999999998864 34677799999999999654
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-21 Score=180.20 Aligned_cols=262 Identities=18% Similarity=0.237 Sum_probs=200.4
Q ss_pred ccCcceeEEEEccC---------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 010051 62 YHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132 (519)
Q Consensus 62 ~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 132 (519)
.|...-+.|+|.++ +|.|++|+...... ....+.-+...|.+++.. +.+|++|+.+++|.+|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----EPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----CCchhhccCceeEEEeec--ccceEEeeccceEEEeeC
Confidence 35666666666666 57788888765421 122222266677777755 669999999999999999
Q ss_pred CCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceee
Q 010051 133 NKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLF 212 (519)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (519)
.+++.-..+....-++++++|+.+|++++.||.|-.|++.++..... ..
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-------------------------------~~ 132 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-------------------------------EK 132 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-------------------------------he
Confidence 99877666666678899999999999999999999999999876532 23
Q ss_pred ecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCC--------CCCCeEEEEEcCCcc
Q 010051 213 HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPG--------ASKPVVAVRFCPLAF 284 (519)
Q Consensus 213 ~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--------~~~~v~~~~~sp~~~ 284 (519)
....|..+|.++.|+|.+.+||+.+.+ |.+++|++.+.. ....+.+ ....+..++|+|+|
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~d----------G~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~- 200 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSCD----------GKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKG- 200 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEecC----------ceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCC-
Confidence 334677899999999999999998888 799999997543 2222211 13467789999998
Q ss_pred cccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 285 NLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHY-AAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 285 ~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
..++..+.|+.|.+|+..+++....+...+. ..+..++|+|+|+|||+++.||.|.|||+++.+
T Consensus 201 ---------------g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 201 ---------------GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ---------------CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 4577778888999999999999888876443 349999999999999999999999999998732
Q ss_pred ccceeeecCCcccccCCCCcccccCCccEEEeecC
Q 010051 364 LGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTN 398 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 398 (519)
. |. ....|.+++|.|+...+..-..
T Consensus 266 ~--------~~--~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 266 R--------HE--FKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred h--------cc--ccceeEEEecCCCCCeeEEEee
Confidence 1 11 2467888999998876655443
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=192.46 Aligned_cols=238 Identities=17% Similarity=0.264 Sum_probs=182.7
Q ss_pred EEEEec-CCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCeEEEEEccc
Q 010051 18 TLDFHP-ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGELIIWKLHT 86 (519)
Q Consensus 18 ~~~~sp-~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~~ 86 (519)
.+.|+. +.++||+++..|.|.+||+.....-+ ....+..|...++++.|++. ||.|++||++.
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk------~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK------LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccch------hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 455552 45799999999999999998621111 22345668888888888764 89999999998
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-ceEEEecccccCeEEEEEcCCCCeEEEee
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKG-SVLQILDAHFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 164 (519)
. .....+.+....|+.++|+| .+..++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+|||||
T Consensus 166 ~------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 166 K------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred c------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC
Confidence 7 34555566788999999999 5788999999999999999875 45677899999999999999999999999
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.|+.|+|||+...+....... .-..++.++.|-|...+.++.+...
T Consensus 240 RDK~vkiWd~t~~~~~~~~tI------------------------------nTiapv~rVkWRP~~~~hLAtcsmv---- 285 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTI------------------------------NTIAPVGRVKWRPARSYHLATCSMV---- 285 (839)
T ss_pred CCccEEEEeccCCCccceeEE------------------------------eecceeeeeeeccCccchhhhhhcc----
Confidence 999999999987653322211 1135678999999887766554321
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
.+..|++||++....|...+..|...++.++|..... ..+.+++.|+.|..-..+++
T Consensus 286 ---~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~---------------~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 286 ---VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDR---------------INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ---ccceEEEEeeccccccceeeeccCccccceeccCCCc---------------eeeEeecCccHHHHhhhhcc
Confidence 2258999999999999999999999999999976221 45677777777765544443
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=160.61 Aligned_cols=294 Identities=17% Similarity=0.231 Sum_probs=192.4
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCccccee
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV 95 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~ 95 (519)
...+.|||||..|++-+.|..+++|++...--.....- .+... ....+. -+.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~-----~~~~~--~~~~~r-~~eg------------------- 104 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG-----PLNFS--KHLSYR-YQEG------------------- 104 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCC-----ccccc--cceeEE-eccC-------------------
Confidence 45688999999999999999999999864321110000 00000 000000 0112
Q ss_pred eeccccCCCCeEEEEEc-------CCCCEEEEEeCCCeEEEEEcCCCceEEEecc--ccc---CeEEEEEcCCCCeEEEe
Q 010051 96 LKNLSFHRKDVLDLQWS-------TDGAFLLSGSVDNSCIIWDVNKGSVLQILDA--HFH---YVQGVAWDPLSKYVASL 163 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~~~ 163 (519)
..|...+|- |+..++++.+.+.-|.+||.-+|+....+.+ |.. ...+++|+|||.+|++|
T Consensus 105 --------~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG 176 (406)
T KOG2919|consen 105 --------ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG 176 (406)
T ss_pred --------CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec
Confidence 233333442 5678899999999999999999998877654 222 45689999999999876
Q ss_pred eCCCeEEEEec-CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC-eEEEecCCcc
Q 010051 164 SSDRTCRIYAN-RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS-FLLVPAGSYK 241 (519)
Q Consensus 164 ~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~~~~ 241 (519)
....|++||+ +.++.-.....- ........+-|.+++|+|... .+++++-.
T Consensus 177 -ykrcirvFdt~RpGr~c~vy~t~------------------------~~~k~gq~giisc~a~sP~~~~~~a~gsY~-- 229 (406)
T KOG2919|consen 177 -YKRCIRVFDTSRPGRDCPVYTTV------------------------TKGKFGQKGIISCFAFSPMDSKTLAVGSYG-- 229 (406)
T ss_pred -ccceEEEeeccCCCCCCcchhhh------------------------hcccccccceeeeeeccCCCCcceeeeccc--
Confidence 4778999999 555421111000 000112346678999999655 66665544
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec-CCeEEEEeCCC-C
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT-LNSLYIYDTES-V 319 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~-d~~i~vwd~~~-~ 319 (519)
..+-||.-. ...+...+.+|.+.|+.+.|+++|.. +++|+. +..|..||++. .
T Consensus 230 --------q~~giy~~~-~~~pl~llggh~gGvThL~~~edGn~----------------lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 230 --------QRVGIYNDD-GRRPLQLLGGHGGGVTHLQWCEDGNK----------------LFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred --------ceeeeEecC-CCCceeeecccCCCeeeEEeccCcCe----------------ecccccCCCeEEEEeehhcc
Confidence 455566543 34677888899999999999999954 555553 56899999985 4
Q ss_pred CceEEEeccccc-cEE--EEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEee
Q 010051 320 PPIAILAGLHYA-AIT--DIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEAS 396 (519)
Q Consensus 320 ~~~~~~~~~~~~-~i~--~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 396 (519)
.++..+.. |.. .-. -+...|+|++|++|+.||.|++||+.... ......+ .....++.++++|--.+++++
T Consensus 285 ~pv~~L~r-hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~---~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 285 DPVYALER-HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTG---NYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred chhhhhhh-hccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccc---cccccccceecCcccceeeec
Confidence 56666666 544 222 24557889999999999999999998632 2111111 124678899999986777776
Q ss_pred cCCcee
Q 010051 397 TNDKLV 402 (519)
Q Consensus 397 ~~d~~i 402 (519)
+.....
T Consensus 359 sGqr~f 364 (406)
T KOG2919|consen 359 SGQRIF 364 (406)
T ss_pred cCceee
Confidence 655444
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.6e-22 Score=161.59 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=160.5
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCc------------e---EEEecccccCeEEEEEcC-CCCeEEEee
Q 010051 102 HRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGS------------V---LQILDAHFHYVQGVAWDP-LSKYVASLS 164 (519)
Q Consensus 102 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~------------~---~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 164 (519)
|.+.|+++...+ .|+++++|+.||.|.+||+++.. + ...-.+|...|..+.|.| |...|.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 889999999988 68999999999999999997632 1 011246888999999998 455677888
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC---eEEEecCCcc
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS---FLLVPAGSYK 241 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~---~l~~~~~~~~ 241 (519)
.|.++++||..+.+... ....++.|++-++||-.. +++++..+
T Consensus 122 FDhtlKVWDtnTlQ~a~--------------------------------~F~me~~VYshamSp~a~sHcLiA~gtr~-- 167 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAV--------------------------------DFKMEGKVYSHAMSPMAMSHCLIAAGTRD-- 167 (397)
T ss_pred ccceEEEeecccceeeE--------------------------------EeecCceeehhhcChhhhcceEEEEecCC--
Confidence 99999999998865321 223456788888998543 44444444
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-C
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-P 320 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~ 320 (519)
..|++-|+.. +.....+.+|...|.++.|+|...++ +++|+.||.|++||++.. .
T Consensus 168 --------~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp~~e~v---------------LatgsaDg~irlWDiRrasg 223 (397)
T KOG4283|consen 168 --------VQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSPSSEWV---------------LATGSADGAIRLWDIRRASG 223 (397)
T ss_pred --------CcEEEEeccC-CcceeeeccccCceEEEEeccCceeE---------------EEecCCCceEEEEEeecccc
Confidence 6899999975 45678899999999999999987653 778888999999999854 2
Q ss_pred ceEEE-------------eccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc
Q 010051 321 PIAIL-------------AGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 321 ~~~~~-------------~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
++..+ ...|.+.|+.++|+.+|.+|++++.|..+++|+..++..
T Consensus 224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 22222 123778899999999999999999999999999988753
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=172.25 Aligned_cols=265 Identities=18% Similarity=0.283 Sum_probs=191.6
Q ss_pred EEEEEEecC-------CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC
Q 010051 16 VLTLDFHPI-------SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE 88 (519)
Q Consensus 16 V~~~~~sp~-------~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~ 88 (519)
-.|++|... |+|+|.|+.|..|.|||+.-...+.. ++.+... .+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P------------------~~~LGs~---------~sk~ 228 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLP------------------CVTLGSK---------ASKK 228 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccccc------------------ceeechh---------hhhh
Confidence 367777533 57999999999999999864332210 0000000 0000
Q ss_pred CcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC-CCeEEEeeCC
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL-SKYVASLSSD 166 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d 166 (519)
....-+.-..-.+|+..|..++|+.+- ..||+||.|.+|++||+.+|++..++..|.+.|.++.|+|. ..+|++|+.|
T Consensus 229 ~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D 308 (463)
T KOG0270|consen 229 KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD 308 (463)
T ss_pred hhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc
Confidence 000001112234699999999998864 57899999999999999999999999999999999999984 6789999999
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~ 246 (519)
+++.+.|.+....... .....+.|..++|.|.....+.++.+.
T Consensus 309 ~~V~l~D~R~~~~s~~-------------------------------~wk~~g~VEkv~w~~~se~~f~~~tdd------ 351 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGK-------------------------------EWKFDGEVEKVAWDPHSENSFFVSTDD------ 351 (463)
T ss_pred ceEEeeeccCccccCc-------------------------------eEEeccceEEEEecCCCceeEEEecCC------
Confidence 9999999986321100 012346688999999877666655432
Q ss_pred cccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEe
Q 010051 247 ESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILA 326 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~ 326 (519)
|.++-+|++..+.++..+..|..+|.++.+++.-. .++.+++.++.+++|++....+.....
T Consensus 352 ---G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p---------------~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 352 ---GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP---------------GLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred ---ceEEeeecCCCCCceeEEEeccCCcceEEecCCCC---------------cceeeccccceEEEEeecCCCCccccc
Confidence 79999999999999999999999999999998654 458889999999999987544322211
Q ss_pred c-cccccEEEEEEcCCCC-EEEEEeCCCcEEEEEecCC
Q 010051 327 G-LHYAAITDIAWSNNAR-YLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 327 ~-~~~~~i~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~ 362 (519)
. ...+...|+++.|+-. +|+.|+..+.++|||+.+.
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 0 0124466778888764 5777888888999999765
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.9e-21 Score=172.13 Aligned_cols=275 Identities=12% Similarity=0.064 Sum_probs=179.0
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEE-EEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEE
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLL-ATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIW 82 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw 82 (519)
..++.+.+| ..+.+++|+|+++.+ ++++.++.|++||..+++....+........+..+...-..+..+..++.|++|
T Consensus 22 ~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 22 EVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred ceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 344444444 457889999999976 567788999999999887665443221111222222221111222346789999
Q ss_pred EcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDN-SCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
|+.+. +.+..+. +...+.+++|+|+|.++++++.++ .+.+||..+++....+... ..+..+.|+|++++|+
T Consensus 101 d~~~~------~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 101 DIETR------KVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELW 172 (300)
T ss_pred ECCCC------eEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEE
Confidence 99765 3444443 234468899999999999888765 5677899888776554322 3457899999999885
Q ss_pred Ee-eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 162 SL-SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 162 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
++ ..++.|.+||+.+++......... .+ ..........++|+|++++++++....
T Consensus 173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~--------~~----------------~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 173 VSSEIGGTVSVIDVATRKVIKKITFEI--------PG----------------VHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEcCCCCEEEEEEcCcceeeeeeeecc--------cc----------------cccccCCccceEECCCCCEEEEEcCCC
Confidence 54 469999999998764321110000 00 000011234688999999877654332
Q ss_pred ceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEE-ecCCeEEEEeCCCC
Q 010051 241 KISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAI-ATLNSLYIYDTESV 319 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~-~~d~~i~vwd~~~~ 319 (519)
+.+.+||..+.. ....+ .+...+.++.|+|+|. +++++ ..++.|.+||+.++
T Consensus 229 ---------~~i~v~d~~~~~-~~~~~-~~~~~~~~~~~~~~g~----------------~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 229 ---------NRVAVVDAKTYE-VLDYL-LVGQRVWQLAFTPDEK----------------YLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ---------CeEEEEECCCCc-EEEEE-EeCCCcceEEECCCCC----------------EEEEEcCCCCeEEEEECCCC
Confidence 478999986543 22222 2345788999999984 45554 45789999999999
Q ss_pred CceEEEeccccccEEEEEEcC
Q 010051 320 PPIAILAGLHYAAITDIAWSN 340 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~ 340 (519)
+++..+.. ....+.++++|
T Consensus 282 ~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 282 KVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred cEEEEEEc--ccccceeEeCC
Confidence 99988875 45568888875
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.4e-22 Score=172.01 Aligned_cols=284 Identities=15% Similarity=0.188 Sum_probs=208.7
Q ss_pred CcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCeEEEEEcccCCCcccceeeeccccCCC
Q 010051 35 YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGELIIWKLHTTETGQAWKVLKNLSFHRK 104 (519)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 104 (519)
..++|||+........+.... ....+.++.|+.. +..+++|.-... ......+..+.+.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t-------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd-- 80 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQT-------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLTGD-- 80 (673)
T ss_pred CceEEeecccccCccccccCC-------CCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeeccccc--
Confidence 459999998765443332110 1112555555443 566777764432 1112233333332
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccccc
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEK 184 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 184 (519)
.-.|++......++++|+..+.|+|||++...+.+.+.+|...|+++.++-...+|++++..|.|.|..+.++.......
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 44556555566899999999999999999777778889999999999999999999999999999999998875332221
Q ss_pred ccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccc
Q 010051 185 MNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA 264 (519)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 264 (519)
. .....++-+.|+|..++++...++. +.|.+||........
T Consensus 161 ~------------------------------~sgqsvRll~ys~skr~lL~~asd~---------G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 161 I------------------------------DSGQSVRLLRYSPSKRFLLSIASDK---------GAVTLWDVQGMSPIF 201 (673)
T ss_pred c------------------------------CCCCeEEEeecccccceeeEeeccC---------CeEEEEeccCCCccc
Confidence 1 1123456799999999888876654 799999998766666
Q ss_pred ccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCE
Q 010051 265 LQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARY 344 (519)
Q Consensus 265 ~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 344 (519)
.....|..+...|+|+|.... ++++.+.|..|++||.........+.. ..+.+.++|+++|.+
T Consensus 202 ~~~~~HsAP~~gicfspsne~---------------l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEA---------------LLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTY 264 (673)
T ss_pred chhhhccCCcCcceecCCccc---------------eEEEecccceEEEeecccccccceeee--cCCcceeeecCCceE
Confidence 677889999999999998753 588999999999999998777777664 678999999999999
Q ss_pred EEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCc
Q 010051 345 LALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSED 390 (519)
Q Consensus 345 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (519)
|+.|...|.|..||++..+.. ...+..|. ..|++++|-+..
T Consensus 265 L~aG~s~G~~i~YD~R~~k~P-v~v~sah~----~sVt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAP-VAVRSAHD----ASVTRVAFQPSP 305 (673)
T ss_pred EEeecCCceEEEEecccCCCC-ceEeeecc----cceeEEEeeecc
Confidence 999999999999999876432 12223333 458888887765
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.9e-21 Score=156.18 Aligned_cols=259 Identities=20% Similarity=0.272 Sum_probs=181.2
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceEEEecccccCeEEEEEcC--CCCeEEEeeCCCeEEEEe
Q 010051 100 SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG----SVLQILDAHFHYVQGVAWDP--LSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 100 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 173 (519)
.+|.+-|.++.|.+.|+++|+|+.|++|.|||.+.. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 358888999999999999999999999999997543 45667889999999999964 489999999999999997
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC--CCeEEEecCCcceeeeecccce
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD--GSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
-....... ....+... .......+.|+.+.|.|. |-.|++++.+ +.
T Consensus 90 E~~~~~~~-~~~~Wv~~---------------------ttl~DsrssV~DV~FaP~hlGLklA~~~aD----------G~ 137 (361)
T KOG2445|consen 90 EQEKSEEA-HGRRWVRR---------------------TTLVDSRSSVTDVKFAPKHLGLKLAAASAD----------GI 137 (361)
T ss_pred eccccccc-ccceeEEE---------------------EEeecCCcceeEEEecchhcceEEEEeccC----------cE
Confidence 64322111 01111111 112233567889999995 7778888777 57
Q ss_pred EEEEeccCCCccc------------ccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecC-----CeEEEE
Q 010051 252 AYIFSRKDLSRPA------------LQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATL-----NSLYIY 314 (519)
Q Consensus 252 i~i~~~~~~~~~~------------~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d-----~~i~vw 314 (519)
++||+..+..... .....+..+..|+.|+|....- .+|+.|+.+ +.++||
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~-------------p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE-------------PLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC-------------ceEEEEcccCCccccceEEE
Confidence 7787765432211 1122456678899999754221 344444443 478888
Q ss_pred eCCCC----CceEEEeccccccEEEEEEcCCC----CEEEEEeCCCcEEEEEecCCc-------c-------cceeeecC
Q 010051 315 DTESV----PPIAILAGLHYAAITDIAWSNNA----RYLALSSQDGYCTLVEFENDE-------L-------GIPISLSG 372 (519)
Q Consensus 315 d~~~~----~~~~~~~~~~~~~i~~~~~s~~g----~~l~~~~~dg~i~vwd~~~~~-------~-------~~~~~~~~ 372 (519)
....+ ..+..+.+ |..+|++++|.|+- .+||+++.|| |+||.+.... . ...+..-.
T Consensus 205 e~~e~~rKw~kva~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs 282 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPD-HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVS 282 (361)
T ss_pred EecCCcceeeeehhcCC-CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEee
Confidence 76543 34556777 99999999999973 4799999999 9999997411 0 01111111
Q ss_pred CcccccCCCCcccccCCccEEEeecCCcee-eec
Q 010051 373 NKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAE 405 (519)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~ 405 (519)
....+.+.++.+.|+-.|..|++.++||++ .|.
T Consensus 283 ~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 283 ELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 111355789999999999999999999998 444
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=164.82 Aligned_cols=259 Identities=18% Similarity=0.315 Sum_probs=189.2
Q ss_pred cCCCCCEEEEEEecCCC--EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 10 WHDTKPVLTLDFHPISG--LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
..|.+.|..+.-++-++ +.|+-+..|.|+||++...- ..+ ......+. +
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l---------~~~~~~~~--------------~---- 198 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NAL---------SEPGLEVK--------------D---- 198 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhh---------cCcccccc--------------c----
Confidence 46778888888877654 66677788999999986421 111 10000000 0
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceE---EEecccccCeEEEEEcCC-CCeEEE
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKGSVL---QILDAHFHYVQGVAWDPL-SKYVAS 162 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~~~~-~~~l~~ 162 (519)
...+.+.++.+|...=..|+|||- ...|++|.--+.|++|...+|... ..+.+|...|-.++|+|. ...|++
T Consensus 199 ---s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 199 ---SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred ---cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEe
Confidence 111567888889999999999992 234888888889999999987643 346779999999999996 457899
Q ss_pred eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
||.||+|+|||++.+.... .+....|.+.|+-++|+.+-.+|++|+.+
T Consensus 276 cS~DgsIrIWDiRs~~~~~-----------------------------~~~~kAh~sDVNVISWnr~~~lLasG~Dd--- 323 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKA-----------------------------AVSTKAHNSDVNVISWNRREPLLASGGDD--- 323 (440)
T ss_pred eecCceEEEEEecCCCccc-----------------------------eeEeeccCCceeeEEccCCcceeeecCCC---
Confidence 9999999999999874321 11224677889999999988888877666
Q ss_pred eeeecccceEEEEeccCCC--cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC
Q 010051 243 SSMSESINSAYIFSRKDLS--RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP 320 (519)
Q Consensus 243 ~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~ 320 (519)
+.+.|||++... .++..+.-|..+|+++.|+|... ..+++++.|..|.+||+..-.
T Consensus 324 -------Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~---------------s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 324 -------GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED---------------SVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred -------ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC---------------ceEEeccCCCcEEEEEeeccC
Confidence 799999998654 67788899999999999999753 358888899999999986321
Q ss_pred c----------------eEEEeccc--cccEEEEEEcCCC-CEEEEEeCCCcEE
Q 010051 321 P----------------IAILAGLH--YAAITDIAWSNNA-RYLALSSQDGYCT 355 (519)
Q Consensus 321 ~----------------~~~~~~~~--~~~i~~~~~s~~g-~~l~~~~~dg~i~ 355 (519)
- ...+.- | ...+..+.|++.- .+|++.+.||.-.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred ChhhhccccccchhcCCceeEEE-ecchhHhhhheeccCCCCeEEEecccceeE
Confidence 1 011111 4 3467889999874 4788888888533
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.6e-22 Score=175.12 Aligned_cols=288 Identities=17% Similarity=0.173 Sum_probs=186.0
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCe--EEEeeCCCeEEEE
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKY--VASLSSDRTCRIY 172 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~~dg~i~iw 172 (519)
+...+.+|++.|.+|...|.|.+|++|+.||+|+||.+.+|.++..+.- .+.|.+++|+|.+.. |+++- ...+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 4455678999999999999999999999999999999999999998864 468999999997664 44443 3346666
Q ss_pred ecCCCCcccc----ccccceeeEEEecc--CcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce----
Q 010051 173 ANRPTKSKGV----EKMNYVCQHVITKA--GQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI---- 242 (519)
Q Consensus 173 d~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~---- 242 (519)
+..-+..... ..+........... -.............+.....+...|..+.|+..|.||++...+...
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 5544421100 00000000000000 0000000000111112223445666677777777777766543221
Q ss_pred ------------------------------eeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCC
Q 010051 243 ------------------------------SSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSA 292 (519)
Q Consensus 243 ------------------------------~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 292 (519)
..+......|+|||+.. ...+..+......|..++.+|.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~G--------- 619 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNG--------- 619 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeeeeeeeecCCC---------
Confidence 00111123455555533 22233333334455566666655
Q ss_pred CcccccceEEEEEecCCeEEEEeCCCC-CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe------c-CCcc
Q 010051 293 GFFKLPYRLIFAIATLNSLYIYDTESV-PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF------E-NDEL 364 (519)
Q Consensus 293 g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~------~-~~~~ 364 (519)
..++.++.|+.+..||+.-+ ++..++.. |...+++++|++.-.++++|+.||++.|+.- . +..+
T Consensus 620 -------Dnli~gs~d~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 620 -------DNLILGSYDKKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred -------CeEEEecCCCeeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 56888999999999999854 56677777 9999999999999999999999999999842 2 2223
Q ss_pred cceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 365 GIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
...-.+++|.......|..+.|+|...+|.+++.|+++
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 33447788887777889999999999999999999887
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=1.6e-20 Score=152.46 Aligned_cols=282 Identities=20% Similarity=0.338 Sum_probs=202.3
Q ss_pred CCCCEEEEEEec--CC-CEEEEEcC----CCcEEEEEec--CCccccccccccccccccccCcceeEEEEccC-------
Q 010051 12 DTKPVLTLDFHP--IS-GLLATGGA----DYDIKIWLIN--SGEKQKKIPTASYQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 12 h~~~V~~~~~sp--~~-~~la~~~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 75 (519)
-.-.++++.||. +. .+||.|+. .+.|.|-.+. +++.+.. .-..|..+++.+.|.|+
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--------a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--------ANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--------CCCCCCCCccceEecCCccccCcc
Confidence 345788999983 33 37888874 4567776554 3332221 11358889999999997
Q ss_pred -----CCeEEEEEcccCCCcccceee---eccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCc---eEEEecc
Q 010051 76 -----GGELIIWKLHTTETGQAWKVL---KNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGS---VLQILDA 143 (519)
Q Consensus 76 -----~~~i~vw~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~ 143 (519)
+..+++|.+.........+.. ..-..+..++++..|+. +-+++.+.+-|-+..|||++++. ....+-+
T Consensus 115 lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 115 LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 578999998754222111111 11223667899999988 66789999999999999999873 3566788
Q ss_pred cccCeEEEEEcCCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceee
Q 010051 144 HFHYVQGVAWDPLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFR 222 (519)
Q Consensus 144 h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (519)
|...|..++|...+ +.|++.+.||++|+||++..+...+. +.......+..
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII----------------------------YE~p~~~~pLl 246 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII----------------------------YEDPSPSTPLL 246 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE----------------------------ecCCCCCCcce
Confidence 99999999999754 46899999999999999986532221 22222245566
Q ss_pred EEEEccCC-CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 223 RLAWSPDG-SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 223 ~~~~sp~g-~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
.++|+++. +++++-..+. ..|.|.|++....++..+.+|.+.|+.++|.|... ..
T Consensus 247 RLswnkqDpnymATf~~dS---------~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~---------------~h 302 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDS---------NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS---------------SH 302 (364)
T ss_pred eeccCcCCchHHhhhhcCC---------ceEEEEEecCCCcceehhhcCcccccceEecCCCC---------------ce
Confidence 89999865 4555433332 68999999999999999999999999999999764 56
Q ss_pred EEEEecCCeEEEEeCCCCC------ceEEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEE
Q 010051 302 IFAIATLNSLYIYDTESVP------PIAILAGLHYAAITDIAWSNN-ARYLALSSQDGYCTL 356 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~v 356 (519)
+++++.|..+.+||+...- ++..+. -.+.|+.+.|++. +.+|+.+. +..+.+
T Consensus 303 ictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred eeecCCcceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 8889999999999998532 223333 3578999999964 56777765 444444
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=3.2e-21 Score=172.78 Aligned_cols=314 Identities=18% Similarity=0.202 Sum_probs=204.9
Q ss_pred cccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceE
Q 010051 59 SLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL 138 (519)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 138 (519)
.+..|.+.-..++...++|.|.++|.........-..+.....|...|..+.|-|....|++++.|.++++||+.++++.
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee
Confidence 34556666666777778999999998765433222334556679999999999996678999999999999999999887
Q ss_pred EE--ecccccCeEEEEEcCCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecC
Q 010051 139 QI--LDAHFHYVQGVAWDPLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDE 215 (519)
Q Consensus 139 ~~--~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (519)
.. +.+|.+.|.+++|.|.. ..|++|+.||.|.|||++-......... +.......... ..........+....
T Consensus 136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~---~~~~~~~~n~~-ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF---DNRIYGRHNTA-PTPSKPLKKRIRKWK 211 (720)
T ss_pred cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH---hhhhhccccCC-CCCCchhhccccccc
Confidence 76 89999999999999865 4688999999999999987652221111 11111100000 011111111222222
Q ss_pred CCcceeeE---EEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccc-------cCCCC---CCCeEEEEEcCC
Q 010051 216 TLPSFFRR---LAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL-------QLPGA---SKPVVAVRFCPL 282 (519)
Q Consensus 216 ~~~~~i~~---~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~-------~~~~~---~~~v~~~~~sp~ 282 (519)
.....|.+ +.+..|...|++++..+ +.|++||++....... .+..| ...+.++.....
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D---------~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAAD---------STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCC---------cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 22333333 55556778888876622 7999999986543221 12222 223455555555
Q ss_pred cccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC--ceEEEeccccc-c-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 283 AFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP--PIAILAGLHYA-A-ITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 283 ~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~-~-i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
| .++++.+.|+.|++|++.+.. ++..+.+ +.. . -..-..+|++.+|++|+.|...++|.
T Consensus 283 G----------------t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg-~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 283 G----------------TYLFASCTDNSIYFYNMRSLSISPVAEFSG-KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred C----------------CeEEEEecCCcEEEEeccccCcCchhhccC-cccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 5 667888889999999998643 3444443 221 1 12235789999999999999999999
Q ss_pred ecCCcccceeeecCCcccccCCCCcccccCC--ccEEEeecCCcee-eecCCC
Q 010051 359 FENDELGIPISLSGNKVSKDENKSPLVTKSE--DMIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~d~~i-~~~~~~ 408 (519)
+.+.+. .+..+.+|. ..|++++|.|. ...+.+ ++|-.+ +|....
T Consensus 346 vs~~e~-~~~~l~Ght----~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 346 VSSPEA-PPALLLGHT----REVTTVRWLPSATTPVATC-SDDFRVKIWRLSN 392 (720)
T ss_pred ecCccC-ChhhhhCcc----eEEEEEeeccccCCCceee-ccCcceEEEeccC
Confidence 988764 334445554 47777877664 455555 666555 777644
No 155
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=4e-21 Score=173.89 Aligned_cols=226 Identities=15% Similarity=0.222 Sum_probs=186.3
Q ss_pred ecCCCCCEEE-EEEec-CCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------CCe
Q 010051 9 NWHDTKPVLT-LDFHP-ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------GGE 78 (519)
Q Consensus 9 ~~~h~~~V~~-~~~sp-~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~ 78 (519)
+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|...+..+. ..|.+|...|.++....+ |.+
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~---------~~LkgH~snVC~ls~~~~~~~iSgSWD~T 123 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL---------YTLKGHKSNVCSLSIGEDGTLISGSWDST 123 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCch---------hhhhccccceeeeecCCcCceEecccccc
Confidence 4557777777 88875 4446999999999999999888754 457889999999885444 688
Q ss_pred EEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC
Q 010051 79 LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 158 (519)
+++|... ++...+.+|...|++++.-|++ .++||+.|.+|++|. .++.+++|.+|...|+.+++-++ .
T Consensus 124 akvW~~~--------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~-~ 191 (745)
T KOG0301|consen 124 AKVWRIG--------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDD-S 191 (745)
T ss_pred eEEecch--------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecC-C
Confidence 9999876 4566799999999999999988 799999999999998 48889999999999999999875 4
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
.|++|+.||.|++|++.... ++....|...+++++..+++..+++++.
T Consensus 192 ~flScsNDg~Ir~w~~~ge~--------------------------------l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDLDGEV--------------------------------LLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred CeEeecCCceEEEEeccCce--------------------------------eeeeeccceEEEEEEecCCCCeEEEecC
Confidence 58999999999999995432 4555678899999998888899999887
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE 317 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~ 317 (519)
+ +++++|+.. .+...+.-....|+++.+-++| -+++|++||.||||...
T Consensus 240 D----------rtlriW~~~---e~~q~I~lPttsiWsa~~L~Ng-----------------DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 240 D----------RTLRIWKKD---ECVQVITLPTTSIWSAKVLLNG-----------------DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred C----------ceEEEeecC---ceEEEEecCccceEEEEEeeCC-----------------CEEEeccCceEEEEEec
Confidence 7 799999986 4444454455688888888775 48999999999999876
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1.4e-20 Score=152.62 Aligned_cols=211 Identities=23% Similarity=0.352 Sum_probs=161.7
Q ss_pred ceeeeccc-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-EEEe-----cccccCeEEEEEcC--CCCeEEEe
Q 010051 93 WKVLKNLS-FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV-LQIL-----DAHFHYVQGVAWDP--LSKYVASL 163 (519)
Q Consensus 93 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~~l~~~ 163 (519)
++++..+. .+-+.|.|+.|.|++..|++.. |..|.+|++..+.. +..+ ..|....++-+|+| +++.+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 35555554 4566899999999999999876 78899999988765 3333 23556778889998 57777765
Q ss_pred eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCccee
Q 010051 164 SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIS 243 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 243 (519)
+ |+++..||+++.+..... ...|...+..+.|+|+-+++++.+++.
T Consensus 191 ~-d~tl~~~D~RT~~~~~sI------------------------------~dAHgq~vrdlDfNpnkq~~lvt~gDd--- 236 (370)
T KOG1007|consen 191 S-DSTLQFWDLRTMKKNNSI------------------------------EDAHGQRVRDLDFNPNKQHILVTCGDD--- 236 (370)
T ss_pred C-CCcEEEEEccchhhhcch------------------------------hhhhcceeeeccCCCCceEEEEEcCCC---
Confidence 4 899999999976532111 124556788999999999888877764
Q ss_pred eeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC----
Q 010051 244 SMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV---- 319 (519)
Q Consensus 244 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~---- 319 (519)
+.+++||.+....++..+.+|...|+++.|+|... .++++++.|..|.+|...+-
T Consensus 237 ------gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd---------------qLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 237 ------GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD---------------QLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ------ccEEEEeccCCCccccccCCCceEEEEEEecCccc---------------eEEEecCCCceeEEEecccccccc
Confidence 79999999999999999999999999999999764 35777788888888754310
Q ss_pred -------------------------CceEEEeccccccEEEEEEcCCCCE-EEEEeCCCcEEEEEec
Q 010051 320 -------------------------PPIAILAGLHYAAITDIAWSNNARY-LALSSQDGYCTLVEFE 360 (519)
Q Consensus 320 -------------------------~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~dg~i~vwd~~ 360 (519)
..+.++.. |...|++++||.-..+ +|+-+.||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tyde-hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDE-HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccc-cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12335555 8999999999987765 6778999999886654
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.1e-20 Score=162.73 Aligned_cols=252 Identities=13% Similarity=0.156 Sum_probs=187.1
Q ss_pred eeccccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCC----ceEEEecccccCeEEEEEcCC-CCeEEEeeCCCe
Q 010051 96 LKNLSFHRKDVLDLQWSTDG--AFLLSGSVDNSCIIWDVNKG----SVLQILDAHFHYVQGVAWDPL-SKYVASLSSDRT 168 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~ 168 (519)
.....-+...|++++|+|.. +++|+|..-|+|-+||+.+. .-+..+..|..+|.++.|+|. -..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 33444588999999999964 57888999999999999632 235667889999999999985 457899999999
Q ss_pred EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecc
Q 010051 169 CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~ 248 (519)
|++-|+..........+ ......+..+.|+.+...++++..-
T Consensus 259 iR~~D~~~~i~e~v~s~-----------------------------~~d~~~fs~~d~~~e~~~vl~~~~~--------- 300 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSL-----------------------------DTDNIWFSSLDFSAESRSVLFGDNV--------- 300 (498)
T ss_pred eeeeeecchhhHHHhhc-----------------------------CccceeeeeccccCCCccEEEeecc---------
Confidence 99999988653322222 1223446678888877777775543
Q ss_pred cceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC----ceEE
Q 010051 249 INSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP----PIAI 324 (519)
Q Consensus 249 ~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~----~~~~ 324 (519)
+...+||++..+.....+.-|...|..++++|...+ ++++++.|++.+|||++.-. ++..
T Consensus 301 -G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~---------------~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 301 -GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW---------------FLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred -cceEEEEeecCCccchhhhhhhcccceeecCCCCch---------------heeecccCcceeeeehhhhcCCCCccee
Confidence 578899999888777778888899999999998754 48889999999999998532 2233
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC-CcccceeeecCCccc--ccCCCCcccccCCccEEEeecCCce
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN-DELGIPISLSGNKVS--KDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
... |...|.+..|||++-.|+|.+.|..|+|||..- .....+...-.|... .--......|.|+..+++.+.--..
T Consensus 365 t~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 365 TLP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred ccc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence 334 999999999999988899999999999999841 111122222222221 1234455789999999999876655
Q ss_pred e
Q 010051 402 V 402 (519)
Q Consensus 402 i 402 (519)
|
T Consensus 444 I 444 (498)
T KOG4328|consen 444 I 444 (498)
T ss_pred e
Confidence 5
No 158
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.7e-22 Score=182.19 Aligned_cols=196 Identities=21% Similarity=0.343 Sum_probs=162.5
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
-+.+|..+|.|+.|+++..+|++|+.+|+|++||++.++
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk----------------------------------------- 103 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK----------------------------------------- 103 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-----------------------------------------
Confidence 356777888888888777777777777778877776543
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
.++.|.+|...+..+.|+|-+.+++.|+.|+.+.+||++...+.+.+.+|...|..+.|+|+|++++.+++|.
T Consensus 104 -------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 104 -------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred -------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 4567778999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeec
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~ 247 (519)
++++||+..++.
T Consensus 177 tvki~d~~agk~-------------------------------------------------------------------- 188 (825)
T KOG0267|consen 177 TVKIWDLTAGKL-------------------------------------------------------------------- 188 (825)
T ss_pred eeeeeccccccc--------------------------------------------------------------------
Confidence 999999866531
Q ss_pred ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 248 SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
...+..|...+..+.|+|.... +..|+.|+++++||+++.+.+.....
T Consensus 189 ----------------~~ef~~~e~~v~sle~hp~e~L----------------la~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 189 ----------------SKEFKSHEGKVQSLEFHPLEVL----------------LAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred ----------------ccccccccccccccccCchhhh----------------hccCCCCceeeeeccceeEEeeccCC
Confidence 1234567778888888887643 45566667999999998888887777
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCC
Q 010051 328 LHYAAITDIAWSNNARYLALSSQDG 352 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~~l~~~~~dg 352 (519)
....|.++.|+|++..+++|....
T Consensus 237 -~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 -ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -ccCCceeeeecCCceeeecCchhh
Confidence 678899999999999998886553
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.9e-21 Score=171.90 Aligned_cols=258 Identities=18% Similarity=0.227 Sum_probs=184.6
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE 88 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~ 88 (519)
+..|...|+.++|+|....|++++.||+|++|+++.... +
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~---------------s------------------------- 329 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK---------------S------------------------- 329 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC---------------c-------------------------
Confidence 456889999999999999999999999999999943111 0
Q ss_pred CcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----------ceEEEecccccCeEEEEEcCCCC
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG----------SVLQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~ 158 (519)
.....+.+.++.+|.++|.|+++.+++.++++|+.||+|+.|++... .....+.+|...|+.+++|+...
T Consensus 330 ~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~ 409 (577)
T KOG0642|consen 330 AEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD 409 (577)
T ss_pred cccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence 01122677788899999999999999999999999999999965421 23457789999999999999999
Q ss_pred eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
.|++++.||++++|+......... ......+...++.+-.....+.+++.
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~~~f------------------------------~~~~e~g~Plsvd~~ss~~a~~~~s~ 459 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESPCTF------------------------------GEPKEHGYPLSVDRTSSRPAHSLASF 459 (577)
T ss_pred ceeeecCCceEEeeccCCcCcccc------------------------------CCccccCCcceEeeccchhHhhhhhc
Confidence 999999999999999876543100 00001111223333222111111111
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCC-------CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeE
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLP-------GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSL 311 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i 311 (519)
.. +.-.+++..... .+..+. .....++.+.++|.+ .+.+++..|+.|
T Consensus 460 ~~---------~~~~~~~~ev~s-~~~~~~s~~~~~~~~~~~in~vVs~~~~----------------~~~~~~hed~~I 513 (577)
T KOG0642|consen 460 RF---------GYTSIDDMEVVS-DLLIFESSASPGPRRYPQINKVVSHPTA----------------DITFTAHEDRSI 513 (577)
T ss_pred cc---------ccccchhhhhhh-heeeccccCCCcccccCccceEEecCCC----------------CeeEecccCCce
Confidence 10 011111211111 111111 112346677888876 568888899999
Q ss_pred EEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 312 YIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 312 ~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
+++|..+++++..... |...++++++.|+|.+|++++.|+.+++|.+....
T Consensus 514 r~~dn~~~~~l~s~~a-~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVA-HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ecccccccccchheee-ccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 9999999999999988 99999999999999999999999999999987653
No 160
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.5e-19 Score=165.44 Aligned_cols=363 Identities=14% Similarity=0.133 Sum_probs=229.7
Q ss_pred CCCeeEEecCCCCCEEEEEEecCCC---EEEEEcCCCcEEEEEecCCccccccccccccccccc--c--Ccce-------
Q 010051 2 KGGTLQINWHDTKPVLTLDFHPISG---LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSY--H--GSAI------- 67 (519)
Q Consensus 2 ~~~~~~~~~~h~~~V~~~~~sp~~~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~--~~~v------- 67 (519)
+|.++..+.+|..+++++.+.|... ++.+++.+|.|++||...+..++.+........+.. + ...+
T Consensus 46 Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~ 125 (792)
T KOG1963|consen 46 TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE 125 (792)
T ss_pred hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc
Confidence 3556677889999999999988764 677999999999999999988776643322211110 0 0000
Q ss_pred --------------------------------------eEEEEccC--------CCeEEEEEcccCCCcccceeeecccc
Q 010051 68 --------------------------------------NILRFSPC--------GGELIIWKLHTTETGQAWKVLKNLSF 101 (519)
Q Consensus 68 --------------------------------------~~~~~~~~--------~~~i~vw~~~~~~~~~~~~~~~~~~~ 101 (519)
.++.+++. ...+.+|...... ........-..
T Consensus 126 ~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~ 203 (792)
T KOG1963|consen 126 DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVH 203 (792)
T ss_pred cceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhh
Confidence 11111111 1345566665532 11011111223
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--C--ceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK--G--SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
|...+++.++||+++++|+|..||.|.+|.--. + ...+.+.-|...|.++.|+++|.+|++|+..|.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 777799999999999999999999999997322 1 234556778899999999999999999999999999999998
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEec
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSR 257 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~ 257 (519)
+.+... ...+.|..+.+|||+.+.++...|+ .|.+...
T Consensus 284 ~kqfLP--------------------------------RLgs~I~~i~vS~ds~~~sl~~~DN----------qI~li~~ 321 (792)
T KOG1963|consen 284 KKQFLP--------------------------------RLGSPILHIVVSPDSDLYSLVLEDN----------QIHLIKA 321 (792)
T ss_pred Cccccc--------------------------------ccCCeeEEEEEcCCCCeEEEEecCc----------eEEEEec
Confidence 743332 3357788999999999999988884 5555544
Q ss_pred cCCCcc--ccc--------CCCCCCCeEEEEEcCCcccccccCCCCcccc------------------------------
Q 010051 258 KDLSRP--ALQ--------LPGASKPVVAVRFCPLAFNLRESNSAGFFKL------------------------------ 297 (519)
Q Consensus 258 ~~~~~~--~~~--------~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~------------------------------ 297 (519)
.+.... +.. .....+-.+.+.++|.-..++..+..|.+..
T Consensus 322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~i 401 (792)
T KOG1963|consen 322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGI 401 (792)
T ss_pred cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEee
Confidence 322110 000 0112233445556663333333332222211
Q ss_pred -------cceEEEEEec----------CCeEEEEeCCCC----CceEEEeccccccEEEEEEcC-CCC-EEEEEeCCCcE
Q 010051 298 -------PYRLIFAIAT----------LNSLYIYDTESV----PPIAILAGLHYAAITDIAWSN-NAR-YLALSSQDGYC 354 (519)
Q Consensus 298 -------~~~~~~~~~~----------d~~i~vwd~~~~----~~~~~~~~~~~~~i~~~~~s~-~g~-~l~~~~~dg~i 354 (519)
...+++++-. .-.+++|-.... .+...+...|...+...++.+ ... .+++++.||.+
T Consensus 402 tav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~ 481 (792)
T KOG1963|consen 402 TAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF 481 (792)
T ss_pred eeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeE
Confidence 1123333211 224666754432 233333444766655555544 333 79999999999
Q ss_pred EEEEecCCcc----cceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCCC
Q 010051 355 TLVEFENDEL----GIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 355 ~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
+||-+...+- ...|........+...+..++||.||..|+.+-++...+|+...
T Consensus 482 KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 482 KIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 9999944321 12233333222356789999999999999999999999999776
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=4.3e-20 Score=152.52 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=197.7
Q ss_pred cccCcceeEEEEccC-------------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC----CCEEEEEeC
Q 010051 61 SYHGSAINILRFSPC-------------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD----GAFLLSGSV 123 (519)
Q Consensus 61 ~~~~~~v~~~~~~~~-------------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~ 123 (519)
..|...+..++|++- +..+.+|..........++.... ..|......++|+-| ..+||.|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D-~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYAD-EDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccC-CCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 346677777777642 46788888765432221111111 136777888888764 347889999
Q ss_pred CCeEEEEEcCCCceEEEecccccCeEEEEEcCCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCccccc
Q 010051 124 DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTD 202 (519)
Q Consensus 124 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (519)
-|.|+|.|+.++++...+.+|...|..+.++|+. ++++++|.|.+|++|++++.. |..++..
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~----------Cv~VfGG------- 176 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV----------CVAVFGG------- 176 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe----------EEEEecc-------
Confidence 9999999999999999999999999999999964 688999999999999999864 3333322
Q ss_pred CCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCC
Q 010051 203 DSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPL 282 (519)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 282 (519)
...|...|.++.|+++|.+|++++-+ ..+.+|++....-... + -.++.|+|+
T Consensus 177 -----------~egHrdeVLSvD~~~~gd~i~ScGmD----------hslk~W~l~~~~f~~~-l------E~s~~~~~~ 228 (385)
T KOG1034|consen 177 -----------VEGHRDEVLSVDFSLDGDRIASCGMD----------HSLKLWRLNVKEFKNK-L------ELSITYSPN 228 (385)
T ss_pred -----------cccccCcEEEEEEcCCCCeeeccCCc----------ceEEEEecChhHHhhh-h------hhhcccCCC
Confidence 23567889999999999999998777 6899999872210000 0 000122222
Q ss_pred ccccccc----------CCC------CcccccceEEEEEecCCeEEEEeC-CCCC-------------ceEEEecccccc
Q 010051 283 AFNLRES----------NSA------GFFKLPYRLIFAIATLNSLYIYDT-ESVP-------------PIAILAGLHYAA 332 (519)
Q Consensus 283 ~~~l~~~----------~~~------g~~~~~~~~~~~~~~d~~i~vwd~-~~~~-------------~~~~~~~~~~~~ 332 (519)
+...-.- +.+ ..++...+++++-+.++.|..|.. +-.+ .+..+.- ....
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~ 307 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCD 307 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc-Cccc
Confidence 2110000 000 000111267888888999999987 2111 1122222 3344
Q ss_pred EEEE--EEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 333 ITDI--AWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 333 i~~~--~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
|.-+ +|.|-+++||.|...|.|.+||++..+.....++..+ .....|...+||.||..|+...+|+.|
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s--~~~~tVRQ~sfS~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS--KSGSTVRQTSFSRDGSILVLVCDDGTV 377 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec--cccceeeeeeecccCcEEEEEeCCCcE
Confidence 5555 5566789999999999999999998765332232222 235789999999999999999999887
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=168.29 Aligned_cols=275 Identities=18% Similarity=0.262 Sum_probs=202.3
Q ss_pred CEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccce
Q 010051 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWK 94 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~ 94 (519)
.|..++|-|||..|+.+.. ..+.|||.+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~------------------------------------------------ 44 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT------------------------------------------------ 44 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc------------------------------------------------
Confidence 7889999999987776653 458888887764
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEec
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 174 (519)
.+..+++|.+.|.|++|+.||+.+++|+.|..|.+|.-.-...+ . -.|...|.|+.|+|-.+.|++++-. ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-eccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 45667789999999999999999999999999999986433222 2 3588999999999999999998754 3567766
Q ss_pred CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEE
Q 010051 175 RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254 (519)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i 254 (519)
..... ........+.+++|..||++++.|-.+ ++|.+
T Consensus 122 ~qK~V---------------------------------~K~kss~R~~~CsWtnDGqylalG~~n----------GTIsi 158 (1081)
T KOG1538|consen 122 EQKSV---------------------------------SKHKSSSRIICCSWTNDGQYLALGMFN----------GTISI 158 (1081)
T ss_pred hhhhH---------------------------------HhhhhheeEEEeeecCCCcEEEEeccC----------ceEEe
Confidence 54321 111223567899999999999999888 56666
Q ss_pred EeccCCCc-ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccE
Q 010051 255 FSRKDLSR-PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAI 333 (519)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i 333 (519)
-+.....+ .+....+.+.+|.+++|+|... .|.. ..+.......++.+|.+. |+.+..-+. -.-..
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg-------~G~~----di~aV~DW~qTLSFy~Ls-G~~Igk~r~-L~FdP 225 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSG-------EGRN----DILAVADWGQTLSFYQLS-GKQIGKDRA-LNFDP 225 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCC-------CCcc----ceEEEEeccceeEEEEec-ceeeccccc-CCCCc
Confidence 65432222 2233446788999999999642 1111 457777788888888876 444443333 33456
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeee
Q 010051 334 TDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTA 404 (519)
Q Consensus 334 ~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 404 (519)
.|+.+-++|.|++.|+.|+.+.+|.-+.-.++.. +. ....++.++..|++..++.|..|+++..
T Consensus 226 ~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTv----g~---~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 226 CCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTV----GE---QDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred hhheeccCCcEEEEccCCCceEEEeecCeEEeec----cc---cceeEEEEEEccCCceEEEEEccCeeeh
Confidence 7889999999999999999999997554322211 11 2467899999999999999999999943
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=154.25 Aligned_cols=278 Identities=17% Similarity=0.227 Sum_probs=180.5
Q ss_pred CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-----------CCeEEEEEcccCCCcccce
Q 010051 26 GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-----------GGELIIWKLHTTETGQAWK 94 (519)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~i~vw~~~~~~~~~~~~ 94 (519)
..+|++-+.|.|+|||..+++.+.. +.+++..++.+.|... ||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~---------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE---------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe---------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----
Confidence 4688898999999999999886655 4456666666666553 799999999977432
Q ss_pred eeeccccCC-CCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCce-EEEe-cccccCeEEEEEcCC-CCeEEEeeCC
Q 010051 95 VLKNLSFHR-KDVLDLQWSTDGAFLLSGSV----DNSCIIWDVNKGSV-LQIL-DAHFHYVQGVAWDPL-SKYVASLSSD 166 (519)
Q Consensus 95 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~~~~-~~~l~~~~~d 166 (519)
.......+. .+..|++.+-.++.+++|.. +-.|.+||++..+. +..+ ..|...|++++|+|. .+.|++||.|
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 222333344 56778887767888888854 67899999998765 5444 679999999999985 5789999999
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC-CeEEEecCCcceeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG-SFLLVPAGSYKISSM 245 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~ 245 (519)
|.+.+||+...... ..+.....+.+.|.++.|..++ +.|.+-+..
T Consensus 188 GLvnlfD~~~d~Ee----------------------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~------ 233 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE----------------------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHM------ 233 (376)
T ss_pred ceEEeeecCCCcch----------------------------hhHHHhhcccceeeeeeeecCCcceEEEEEcc------
Confidence 99999999875311 1122223345668899999888 234443333
Q ss_pred ecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC-CcccccccCCCCcccccceE-EEEEecCCeEEEEeCC------
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP-LAFNLRESNSAGFFKLPYRL-IFAIATLNSLYIYDTE------ 317 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~~~~~~~~-~~~~~~d~~i~vwd~~------ 317 (519)
....+|++.... +...+....-... ..+-. ...|++-+...+ .... .+.++.-|...++-+.
T Consensus 234 ----Etf~~~ele~~~-~~~~~~~~~~~~~-d~r~~~~~dY~I~~~~~~----~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 234 ----ETFAIYELEDGS-EETWLENPDVSAD-DLRKEDNCDYVINEHSPG----DKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred ----CceeEEEccCCC-hhhcccCccchhh-hHHhhhhhhheeecccCC----CcceEEEeccccCceeEEEeeeccccc
Confidence 478889887654 2222221100000 00000 001111111000 0022 3333324444444332
Q ss_pred CCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 318 SVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
..+.+..+.++|..-|+++.|...+.+|.||+.||.+.+|..+
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 2455667777688889999999999999999999999999963
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.2e-19 Score=150.89 Aligned_cols=298 Identities=15% Similarity=0.188 Sum_probs=207.4
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE 88 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~ 88 (519)
..+|.+.|.+|.||.++++||+|+.|..++||++...-..+.-
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~------------------------------------- 94 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP------------------------------------- 94 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-------------------------------------
Confidence 4689999999999999999999999999999998754321110
Q ss_pred Ccccceeeecc-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc--cccCeEEEEEcCCCCeEEEeeC
Q 010051 89 TGQAWKVLKNL-SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA--HFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
+.+... ..|.+.|.|++|....++|++|..+++|.+-|+++.+.+..+.. ..+.|..+..+|..+.|++.+.
T Consensus 95 -----KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~ 169 (609)
T KOG4227|consen 95 -----KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR 169 (609)
T ss_pred -----CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEec
Confidence 111111 23778999999999999999999999999999999988876643 3358999999999999999999
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
++.|.+||.+....... ++-....+....++.|+|-...|++.....
T Consensus 170 ~~~V~~~D~Rd~~~~~~----------------------------~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~----- 216 (609)
T KOG4227|consen 170 AKLVSFIDNRDRQNPIS----------------------------LVLPANSGKNFYTAEFHPETPALILVNSET----- 216 (609)
T ss_pred CceEEEEeccCCCCCCc----------------------------eeeecCCCccceeeeecCCCceeEEecccc-----
Confidence 99999999987642110 111112345567899999876666544332
Q ss_pred ecccceEEEEeccCCCcccccCCCC------CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 246 SESINSAYIFSRKDLSRPALQLPGA------SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
+.+-+||.+....++....+. ...-..+.|+|.|..+.+... ...-.+||+.+.
T Consensus 217 ----~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----------------~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 217 ----GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----------------GKCPLYFDFISQ 276 (609)
T ss_pred ----CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----------------cCCCEEeeeecc
Confidence 577889998776665543322 222357899999976544322 123345666553
Q ss_pred CceEEEecccc-------ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc-------c--------------ceeeec
Q 010051 320 PPIAILAGLHY-------AAITDIAWSNNARYLALSSQDGYCTLVEFENDEL-------G--------------IPISLS 371 (519)
Q Consensus 320 ~~~~~~~~~~~-------~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-------~--------------~~~~~~ 371 (519)
.+. +++..|. ..+.+++|--|- .+++|+.+=.|.+|.+....- + ....+.
T Consensus 277 R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 277 RCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred cce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 332 2221122 246677886554 489999999999999864211 1 112333
Q ss_pred CCcccccCCCCcccccCCccEEEeecCCcee-eecCC
Q 010051 372 GNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETK 407 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~ 407 (519)
|| ...+..+.|+|...+|++.+-++.+ +|..-
T Consensus 355 GH----RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 355 GH----RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cc----cccccceeecCCcceEeccchhhheeccccc
Confidence 33 3578899999999999999988877 66544
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.2e-18 Score=157.46 Aligned_cols=230 Identities=17% Similarity=0.234 Sum_probs=171.1
Q ss_pred CCCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC----
Q 010051 2 KGGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG---- 77 (519)
Q Consensus 2 ~~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 77 (519)
.|+.++.+.+|.+.|+|++|+.||+++|+|+.|..|.||+..-...++ -.|.+.|.|+.|+|-..
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-----------YSH~D~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-----------YSHNDAIQCMSFNPITHQLAS 110 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-----------eccCCeeeEeecCchHHHhhh
Confidence 467888899999999999999999999999999999999865433222 13899999999999753
Q ss_pred ----eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe---cccccCeEE
Q 010051 78 ----ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL---DAHFHYVQG 150 (519)
Q Consensus 78 ----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~ 150 (519)
..-+|..... .+... .....+.+++|..||++|+.|-.+|+|.+-+- +|+....+ .+...+|.+
T Consensus 111 CsLsdFglWS~~qK-------~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 111 CSLSDFGLWSPEQK-------SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWS 181 (1081)
T ss_pred cchhhccccChhhh-------hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceE
Confidence 3346655432 11111 13457889999999999999999999999874 55544444 346789999
Q ss_pred EEEcCCC-----CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEE
Q 010051 151 VAWDPLS-----KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLA 225 (519)
Q Consensus 151 ~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (519)
++|+|.. ..+++.....++.+|.+......... ...-...++.
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r--------------------------------~L~FdP~Cis 229 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR--------------------------------ALNFDPCCIS 229 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEecceeecccc--------------------------------cCCCCchhhe
Confidence 9999863 36778888888888877653211111 1122244899
Q ss_pred EccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcc
Q 010051 226 WSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFF 295 (519)
Q Consensus 226 ~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~ 295 (519)
+.|+|.++++|+.+ +.+.+|-.. +...-++......|+.++..|++++++.|..||.+
T Consensus 230 Yf~NGEy~LiGGsd----------k~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 230 YFTNGEYILLGGSD----------KQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred eccCCcEEEEccCC----------CceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 99999999999887 567777653 23334455567899999999999999999999876
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4e-20 Score=155.49 Aligned_cols=211 Identities=19% Similarity=0.337 Sum_probs=155.7
Q ss_pred CeeEEecCCCCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------
Q 010051 4 GTLQINWHDTKPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 75 (519)
.++..+.+|.+.=++|+|||-.. .|++|.--+.|++|...+|.-.. -...+.+|...|-.++|||.
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v------d~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV------DQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceee------cCccccccccchhhhccCCccCceEEe
Confidence 45667788999999999999433 68888888889999998875432 23446779999999999997
Q ss_pred ---CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CceEEEecccccCeE
Q 010051 76 ---GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK---GSVLQILDAHFHYVQ 149 (519)
Q Consensus 76 ---~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~ 149 (519)
|++|+|||++.+... .++.. +.|.+.|+.|.|+..-.+||+|+.||++.|||+++ ++.+..++.|..+|+
T Consensus 276 cS~DgsIrIWDiRs~~~~---~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKK---AAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred eecCceEEEEEecCCCcc---ceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 799999999987443 22333 77999999999999888999999999999999986 567889999999999
Q ss_pred EEEEcCC-CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 150 GVAWDPL-SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 150 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
++.|+|. ...|++++.|.+|.+||+....-...... ............++.....+..+..+.|++
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~-------------~a~~~L~dlPpQLLFVHqGQke~KevhWH~ 418 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ-------------EAAEGLQDLPPQLLFVHQGQKEVKEVHWHR 418 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc-------------ccccchhcCCceeEEEecchhHhhhheecc
Confidence 9999985 45688889999999999876432100000 000001111222333334456677899999
Q ss_pred CCCeEEEec
Q 010051 229 DGSFLLVPA 237 (519)
Q Consensus 229 ~g~~l~~~~ 237 (519)
+-.-+++.+
T Consensus 419 QiPG~lvsT 427 (440)
T KOG0302|consen 419 QIPGLLVST 427 (440)
T ss_pred CCCCeEEEe
Confidence 755444443
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=173.83 Aligned_cols=280 Identities=20% Similarity=0.272 Sum_probs=198.3
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
+.+.+|..+|+|+.|...|.++++|+.|..++||.++++.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------------------- 223 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------------------- 223 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----------------------------------------
Confidence 3457899999999999999999999999999999987765
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 166 (519)
++....||.+.|+.++.+.+..++++++.|..|++|-+.++.++..+.+|++.|++++|+|-. +.+.|
T Consensus 224 --------~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d 291 (1113)
T KOG0644|consen 224 --------CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD 291 (1113)
T ss_pred --------hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC
Confidence 344556799999999999999999999999999999999999999999999999999999954 77889
Q ss_pred CeEEEEecCCCCcc------ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 167 RTCRIYANRPTKSK------GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 167 g~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
|++++||.+-.-.. ........+...+...+.....+....... ...+..++|...+-.++...++.
T Consensus 292 gt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~-------n~e~~~l~~~~~~lif~t~ssd~ 364 (1113)
T KOG0644|consen 292 GTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR-------NHEFEQLAWRSNLLIFVTRSSDL 364 (1113)
T ss_pred CceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc-------cchhhHhhhhccceEEEeccccc
Confidence 99999999821110 000011111111111111111111111111 11222344444443333333221
Q ss_pred -ceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 241 -KISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 241 -~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
.+.........+.+|++.++ .....+.+|...+..+.++|-+..+ ..+++.||.+.|||+-.|
T Consensus 365 ~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri---------------~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 365 SSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRI---------------AMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred cccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHh---------------hhhccCCCceEeeecccC
Confidence 12222333456778888654 4567788999999999999976543 567778889999999999
Q ss_pred CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 320 PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
.+++.+... ...+.+..||+||..++....-|.++|.....+
T Consensus 429 ~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 429 IPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred Ccceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 888777653 456777899999999998888899999876544
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=138.22 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=192.8
Q ss_pred CCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccc-cccccccccccccCcceeEEEEccC------CCeEEEEEccc
Q 010051 14 KPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKK-IPTASYQNSLSYHGSAINILRFSPC------GGELIIWKLHT 86 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~------~~~i~vw~~~~ 86 (519)
..|.+-+|+|.+++|++|+.+|.|.|..+.+-..-.. -+.........+|.++++.++|..+ +|.|+-|..+.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 4577788999999999999999999998864322111 1222234456889999999999754 68999887764
Q ss_pred CCCcccceeeeccc-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCe
Q 010051 87 TETGQAWKVLKNLS-------FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKY 159 (519)
Q Consensus 87 ~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 159 (519)
.......+.+..+. ..--.|+++...|..+-+++++.|+.++-||+++|+..+.+++|+..|.++.-......
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 42211111111111 12246889999998777877889999999999999999999999999999998666667
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
+++|++||++|+||.++.+........... -........+|.+++ -+..+++++.+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~---------------------~~lRp~~g~wigala--~~edWlvCGgGp 227 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNP---------------------NLLRPDWGKWIGALA--VNEDWLVCGGGP 227 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccCh---------------------hhcCcccCceeEEEe--ccCceEEecCCC
Confidence 999999999999999998743322111000 000111234454555 456788887764
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
.+.+|.++... +...++ ...++..+.|.. ..+++++..+.+.-|.+. |
T Consensus 228 -----------~lslwhLrsse-~t~vfp-ipa~v~~v~F~~------------------d~vl~~G~g~~v~~~~l~-G 275 (325)
T KOG0649|consen 228 -----------KLSLWHLRSSE-STCVFP-IPARVHLVDFVD------------------DCVLIGGEGNHVQSYTLN-G 275 (325)
T ss_pred -----------ceeEEeccCCC-ceEEEe-cccceeEeeeec------------------ceEEEeccccceeeeeec-c
Confidence 88999997643 222222 335577777766 458888888899999875 4
Q ss_pred CceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 010051 320 PPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLV 357 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw 357 (519)
........ .....++..|+..- ++|-.++....+.|+
T Consensus 276 vl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 276 VLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEeccC-CccceeeecccCCceEEEEecccceeeeee
Confidence 44444444 33446666665443 445555555555554
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-20 Score=179.57 Aligned_cols=266 Identities=18% Similarity=0.289 Sum_probs=193.7
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCE----EEEEeCCCeEEEEEcCC---C---ceEEEecccc
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAF----LLSGSVDNSCIIWDVNK---G---SVLQILDAHF 145 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~---~---~~~~~~~~h~ 145 (519)
+.++-||.+.........+.+..+. -....+.++|.+.|.. |+.|..||.|.+||... + ..+..+..|.
T Consensus 38 ~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred ccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC
Confidence 3455566555443332223444443 3456889999997765 88889999999999865 2 2355678899
Q ss_pred cCeEEEEEcCCCC-eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEE
Q 010051 146 HYVQGVAWDPLSK-YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224 (519)
Q Consensus 146 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 224 (519)
+.|..+.|++... +|++|+.||.|.|||+...+...... .......|.++
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----------------------------~~~~~~eI~~l 167 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----------------------------SQAPPSEIKCL 167 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----------------------------CCCCcccceEe
Confidence 9999999999655 99999999999999998754321110 11235678899
Q ss_pred EEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCC--CeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 225 AWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASK--PVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 225 ~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
+|+..-.++++.+... +.+.|||++.. +++..+..+.. .+..++|+|++.. +.+
T Consensus 168 sWNrkvqhILAS~s~s---------g~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aT--------------ql~ 223 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPS---------GRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHAT--------------QLL 223 (1049)
T ss_pred ccchhhhHHhhccCCC---------CCceeccccCC-CcccccccCCCccceeeeeeCCCCce--------------eee
Confidence 9998877666655442 68899999865 55555554443 5789999998753 223
Q ss_pred EEEecC--CeEEEEeCCCC-CceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecCCcccceeeecCCccccc
Q 010051 303 FAIATL--NSLYIYDTESV-PPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKD 378 (519)
Q Consensus 303 ~~~~~d--~~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 378 (519)
++...| -.|.+||++.. .+++++.+ |...|.++.|++.+ .+|++++.|+.|.+|+.++++....+.. ..
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~------~~ 296 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA------QG 296 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC------CC
Confidence 333333 47999998854 56677777 99999999999977 8999999999999999999865544432 23
Q ss_pred CCCCcccccCCcc-EEEeecCCcee
Q 010051 379 ENKSPLVTKSEDM-IIEASTNDKLV 402 (519)
Q Consensus 379 ~~~~~~~~s~~~~-~l~~~~~d~~i 402 (519)
..+..+.|.|... ++++++-++.|
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccce
Confidence 5678899999886 88888888888
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=2.4e-18 Score=160.34 Aligned_cols=270 Identities=19% Similarity=0.204 Sum_probs=185.5
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCce--EE----EecccccCeEE
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSV--LQ----ILDAHFHYVQG 150 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~--~~----~~~~h~~~v~~ 150 (519)
.+.||++...... ...+. ....|+|++|+| +..+|+.|..+|+|.+||++.+.. .. ....|..+++.
T Consensus 223 ~~~vW~~~~p~~P-----e~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP-----ELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred eEEEEecCCCCCc-----eEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 7889999876221 11222 467899999999 567788888999999999987654 22 22568889999
Q ss_pred EEEcCCC--CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 151 VAWDPLS--KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 151 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
+.|..+. .-|++++.||.|..|+++...............+ ..........+++++|.+
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~-------------------~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH-------------------KGQQSSKAVGATSLKFEP 357 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc-------------------cccccccccceeeEeecc
Confidence 9997543 4499999999999998876543211111000000 000111234567889988
Q ss_pred C-CCeEEEecCCcceeeeecccceEEEEecc---CCC----cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccce
Q 010051 229 D-GSFLLVPAGSYKISSMSESINSAYIFSRK---DLS----RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYR 300 (519)
Q Consensus 229 ~-g~~l~~~~~~~~~~~~~~~~~~i~i~~~~---~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~ 300 (519)
. -..+++|+..+ .|+.-+.. ... +....+..|.++|+++.++|-+ .
T Consensus 358 ~~p~~FiVGTe~G----------~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~----------------~ 411 (555)
T KOG1587|consen 358 TDPNHFIVGTEEG----------KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY----------------P 411 (555)
T ss_pred CCCceEEEEcCCc----------EEEEEeccCCcccccccccccccccccCcceEeeecCCCc----------------c
Confidence 5 45566666654 33332221 111 2234566788999999999977 3
Q ss_pred EEEEEecCCeEEEEeCC-CCCceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecCCcccceeeecCCccccc
Q 010051 301 LIFAIATLNSLYIYDTE-SVPPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKD 378 (519)
Q Consensus 301 ~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 378 (519)
.++..+.|.+++||... ...++..+.. +...|++++|||.. ..|+++..||.|.+||+............-. .
T Consensus 412 k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~----~ 486 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC----S 486 (555)
T ss_pred ceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc----c
Confidence 34444449999999988 6777777777 77889999999986 4677888899999999987755444433222 3
Q ss_pred CCCCcccccCCccEEEeecCCceee
Q 010051 379 ENKSPLVTKSEDMIIEASTNDKLVT 403 (519)
Q Consensus 379 ~~~~~~~~s~~~~~l~~~~~d~~i~ 403 (519)
.....+.|++.|+.|++|...|.+.
T Consensus 487 ~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 487 PALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cccceeecCCCCcEEEEecCCCcEE
Confidence 4567788889999999999988763
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.3e-18 Score=159.73 Aligned_cols=306 Identities=18% Similarity=0.191 Sum_probs=212.4
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------C
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------G 77 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~ 77 (519)
....+|+..++|.++||+++++|+|..||.|.||.--..+... ...+.+.+|...|++++|+++| +
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-----~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-----ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-----ccceEEEecccccceeEEecCCceEeecccce
Confidence 3456788899999999999999999999999999643311110 0234588999999999999996 5
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-----------ccc
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-----------HFH 146 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------h~~ 146 (519)
.+.+|.+.+++ .+-|..-.+.|..+.+|||+.+.+....|+.|.+....+......+.+ ..+
T Consensus 274 VLv~Wq~~T~~-------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 274 VLVLWQLETGK-------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred EEEEEeecCCC-------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 56789998873 223334568899999999999999999999999998876554443332 234
Q ss_pred CeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecC-CCcceeeEEE
Q 010051 147 YVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDE-TLPSFFRRLA 225 (519)
Q Consensus 147 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~ 225 (519)
-.+.++++|..+.++..+..|.|.+||+.+......... +.... .... .+.-.++.++
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v---~~~n~------------------~~~~~n~~v~itav~ 405 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV---CDENY------------------SDGDVNIQVGITAVA 405 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE---Eeecc------------------cCCcceeEEeeeeeh
Confidence 567889999778888899999999999987653211100 00000 0000 2334577888
Q ss_pred EccCCCeEEEecCCcceeeeecccceEEEEeccCCCcc----cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 226 WSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRP----ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 226 ~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
.+-.|.++++.-..............+++|-.....+. ......|...+...+|.+.-+. ..
T Consensus 406 ~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--------------~~ 471 (792)
T KOG1963|consen 406 RSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--------------VR 471 (792)
T ss_pred hhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--------------ce
Confidence 88889999886544333322333456778876543322 1234467776666666654432 25
Q ss_pred EEEEecCCeEEEEeCCCC----------CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 302 IFAIATLNSLYIYDTESV----------PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
.++++.||.++||-+... .+...-. .|..+++.++|+.||..|+ ++.|+.|.+||..+
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS-YHKTPITALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred eEEeccCCeEEEEEEecccccCcCccceEEeeeec-cccCcccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence 788999999999987432 2222222 2788999999999996555 56789999999988
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=6.5e-18 Score=139.89 Aligned_cols=346 Identities=15% Similarity=0.189 Sum_probs=213.7
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccceeee
Q 010051 18 TLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLK 97 (519)
Q Consensus 18 ~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~ 97 (519)
-++|||+|+++|+++.- .+.|-|.++-+..+.+.....+.-+.+..+....++....++.|.+|++... +-..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------ew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------EWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc------eeEE
Confidence 46899999999999754 7889998887766544332223333444445555555566899999999876 5566
Q ss_pred ccccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCe--------
Q 010051 98 NLSFHRKDVLDLQWSTDGAFLL-SGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRT-------- 168 (519)
Q Consensus 98 ~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~-------- 168 (519)
.+.....++..++|||||+.|+ +...+-.|.||.+.+.+... +..-...+..++|+|+|++.+.++.-..
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 6777788999999999997655 55668899999998876543 3333456789999999998877764211
Q ss_pred ------EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce
Q 010051 169 ------CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 169 ------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
++-+++.+.....+...+ .+.....-.......++ .....-.+..++|+|.+++|++|+.+..+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsP---------dg~~laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSP---------DGNWLAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECC---------CCcEEEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhh
Confidence 111223322222211111 11111111111111111 11223457789999999999999887443
Q ss_pred eeeec------------------------------------------ccceEEEEeccCC-------------CcccccC
Q 010051 243 SSMSE------------------------------------------SINSAYIFSRKDL-------------SRPALQL 267 (519)
Q Consensus 243 ~~~~~------------------------------------------~~~~i~i~~~~~~-------------~~~~~~~ 267 (519)
...+. .+-...+|...+. .++....
T Consensus 235 rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~ 314 (447)
T KOG4497|consen 235 RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDF 314 (447)
T ss_pred hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCC
Confidence 11100 0000000100000 0001111
Q ss_pred CCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEE
Q 010051 268 PGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLAL 347 (519)
Q Consensus 268 ~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 347 (519)
+...-.+.-++|++|..++++....- -+.+.+||++..+....+.. ..+|....|+|....|+.
T Consensus 315 pnPk~g~g~lafs~Ds~y~aTrnd~~--------------PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 315 PNPKCGAGKLAFSCDSTYAATRNDKY--------------PNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred CCcccccceeeecCCceEEeeecCCC--------------CceEEEEechhhhhhhhhhh--ccceeEEEeCCCCceEEE
Confidence 12233456678888876554433321 25799999998887776664 678999999999999998
Q ss_pred EeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeee
Q 010051 348 SSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTA 404 (519)
Q Consensus 348 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 404 (519)
+.....+++|..... ..+..++ .+..+..+.|..+|..++..+.|...+.
T Consensus 379 ctg~srLY~W~psg~---~~V~vP~----~GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 379 CTGKSRLYFWAPSGP---RVVGVPK----KGFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred EcCCceEEEEcCCCc---eEEecCC----CCceeeeEEecCCCcEEEEEcCCceEEE
Confidence 887788999987642 2222222 2357889999999999999998877644
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2.9e-19 Score=151.30 Aligned_cols=241 Identities=19% Similarity=0.285 Sum_probs=172.3
Q ss_pred EEecCCCCCEEEEEEecCC-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcc
Q 010051 7 QINWHDTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~ 85 (519)
-+..||+++|..++|+|-. ..||+|+.|.+|.||.+-.+.....+.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------------------- 121 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------------------- 121 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------------------------------
Confidence 3557899999999999954 588999999999999987665432211
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEee
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 164 (519)
+.+..|.+|...|--++|+|. .+.|++++.|.+|.+|++.+|+.+..+. |..-|.++.|+.+|.+|++.+
T Consensus 122 --------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 122 --------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred --------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeec
Confidence 356677889999999999995 4678999999999999999999888887 999999999999999999999
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.|..|+|||.++++...... .........+.|-.+|..+.++.+.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~------------------------------~heG~k~~Raifl~~g~i~tTGfsr----- 237 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGV------------------------------AHEGAKPARAIFLASGKIFTTGFSR----- 237 (472)
T ss_pred ccceeEEEcCCCCcEeeecc------------------------------cccCCCcceeEEeccCceeeecccc-----
Confidence 99999999999886321110 0112233467777888844443322
Q ss_pred eecccceEEEEeccCCCcccccCC-CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLP-GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA 323 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~ 323 (519)
.....+-+||..+...++.... .....|.---|.||... ..++|-.|+.|+.|.+....+..
T Consensus 238 --~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~i---------------vYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 238 --MSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSI---------------VYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred --ccccceeccCcccccCcceeEEeccCCceEEeeecCCCCE---------------EEEEecCCcceEEEEecCCCcee
Confidence 2336788999887766643221 23344555556666533 25666789999999998766432
Q ss_pred E-Eec-cccccEEEEEEcCC
Q 010051 324 I-LAG-LHYAAITDIAWSNN 341 (519)
Q Consensus 324 ~-~~~-~~~~~i~~~~~s~~ 341 (519)
. +.. ....+-..+.|-|.
T Consensus 301 hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 301 HYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecccccCCcccccccccc
Confidence 2 211 01344556667665
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-18 Score=151.37 Aligned_cols=259 Identities=17% Similarity=0.238 Sum_probs=183.3
Q ss_pred CEEEEEEecCCCE-EEEEcCCCcEEEEEecCCcccccccccccccccccc-CcceeEEEE------ccCCCeEEEEEccc
Q 010051 15 PVLTLDFHPISGL-LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYH-GSAINILRF------SPCGGELIIWKLHT 86 (519)
Q Consensus 15 ~V~~~~~sp~~~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~------~~~~~~i~vw~~~~ 86 (519)
.|.+++|+....+ +|+.+.|..|++|.-... ..+++. ...+.+. ...|.+..+ ...++.|+|||++.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~---~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPR---VRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCC--CCccce---eeccccchHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence 4899999876542 234456788899964322 111211 1111111 112222222 23468999999985
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccc-ccCeEEEEEcCCCCe-EEEee
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH-FHYVQGVAWDPLSKY-VASLS 164 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~-l~~~~ 164 (519)
. .+.+.+.+|...|+++.|+-...+||+++..|.|.|..+.++.....|... ...|+-+.|+|..+. |.+++
T Consensus 111 k------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 111 K------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred H------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec
Confidence 4 577788999999999999999999999999999999999998877777544 345668999997765 56789
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.+|.|.+||+....+.. .....|..+...++|+|....|++.-+-.
T Consensus 185 d~G~VtlwDv~g~sp~~------------------------------~~~~~HsAP~~gicfspsne~l~vsVG~D---- 230 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIF------------------------------HASEAHSAPCRGICFSPSNEALLVSVGYD---- 230 (673)
T ss_pred cCCeEEEEeccCCCccc------------------------------chhhhccCCcCcceecCCccceEEEeccc----
Confidence 99999999998754321 11234567777899999877776654432
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIA 323 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~ 323 (519)
..|++||..... .... .....+...++|+++|. ++++|...|.|..||++.. .++.
T Consensus 231 -----kki~~yD~~s~~-s~~~-l~y~~Plstvaf~~~G~----------------~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 231 -----KKINIYDIRSQA-STDR-LTYSHPLSTVAFSECGT----------------YLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred -----ceEEEeeccccc-ccce-eeecCCcceeeecCCce----------------EEEeecCCceEEEEecccCCCCce
Confidence 689999987322 1222 23456889999999994 4666666779999999864 5677
Q ss_pred EEeccccccEEEEEEcCCC
Q 010051 324 ILAGLHYAAITDIAWSNNA 342 (519)
Q Consensus 324 ~~~~~~~~~i~~~~~s~~g 342 (519)
++.. |...|++++|-|.-
T Consensus 288 v~sa-h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSA-HDASVTRVAFQPSP 305 (673)
T ss_pred Eeee-cccceeEEEeeecc
Confidence 7777 99999999998864
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=7.7e-17 Score=155.21 Aligned_cols=329 Identities=25% Similarity=0.370 Sum_probs=228.9
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCc-ccccccccc--ccccccc-cCcceeEEEEccC-CCeEEEE
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGE-KQKKIPTAS--YQNSLSY-HGSAINILRFSPC-GGELIIW 82 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~--~~~~~~~-~~~~v~~~~~~~~-~~~i~vw 82 (519)
....|...|.++.|.+.+..++.++.|+.+.+|+...+. ....+.... ....+.. ....-..+..... ++.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 457899999999999999999999999999999998876 333332211 1111111 1111112333233 7899999
Q ss_pred Eccc-CCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCC-e
Q 010051 83 KLHT-TETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK-Y 159 (519)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~ 159 (519)
+... . .....+..|...|..++|+|++.++++++. |+.+++|++..+..+..+..|...|.+++|+|++. .
T Consensus 140 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 140 DLSTPG------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EecCCC------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceE
Confidence 9986 3 566777889999999999999998888885 99999999999888888999999999999999988 5
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
+++++.|+.|++||...+..... ....+.... ...|+|++.++++++.+
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRS------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEee------------------------------ecCCCCcce-eEeECCCCCEEEEecCC
Confidence 55559999999997764321110 011122222 22899999777766665
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
+.+++|+..........+.+|...+.++.|+|++ ..+++++.|+.+.+|+..+.
T Consensus 263 ----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 263 ----------GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG----------------KLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred ----------CcEEEeeecCCCcEEEEEecCCccEEEEEECCCC----------------CEEEEeeCCCcEEEEEcCCC
Confidence 6899999976654233336778899999999966 44555777788999999888
Q ss_pred CceEEEe--ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEe-
Q 010051 320 PPIAILA--GLHYAAITDIAWSNNARYLALS-SQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEA- 395 (519)
Q Consensus 320 ~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~- 395 (519)
....... . |...+..+.|.+++..++.+ ..|+.+.+|++.... ......... .+..+.+++ ...+..
T Consensus 317 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~-~~~~~~~ 387 (466)
T COG2319 317 KLLSSLTLKG-HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEGHS-----NVLSVSFSP-DGRVVSS 387 (466)
T ss_pred ceEEEeeecc-cCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEecCCc-----eEEEEEECC-CCCEEEE
Confidence 7776665 5 77789999994343556555 688999999998775 111111111 156677777 433333
Q ss_pred ecCC-ceeeecCCC
Q 010051 396 STND-KLVTAETKE 408 (519)
Q Consensus 396 ~~~d-~~i~~~~~~ 408 (519)
+..+ ...+|+...
T Consensus 388 ~~~~~~~~~~~~~~ 401 (466)
T COG2319 388 GSTDGTVRLWDLST 401 (466)
T ss_pred ecCCCceEEEeccc
Confidence 3433 333555444
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.4e-18 Score=145.81 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=151.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccccccc
Q 010051 107 LDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMN 186 (519)
Q Consensus 107 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 186 (519)
.+++|+.+|..|++|+.||++++|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 789999999999999999999999988887777778888999999999999999999999 999999998732111000
Q ss_pred ceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC---CeEE-EecCCcceeeeecccceEEEEeccCCCc
Q 010051 187 YVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG---SFLL-VPAGSYKISSMSESINSAYIFSRKDLSR 262 (519)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g---~~l~-~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 262 (519)
......+..+.|+.|+ .+.+ +..... +.+..|++..+..
T Consensus 226 ----------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~---------~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 226 ----------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPG---------GGVRLCDISLWSG 268 (398)
T ss_pred ----------------------------cccchhhhhceecccCCCceEEEEEecCCC---------CceeEEEeeeecc
Confidence 0111223456666655 2222 222221 2333443332222
Q ss_pred ----ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEE
Q 010051 263 ----PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAW 338 (519)
Q Consensus 263 ----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 338 (519)
+..........|++++.+++| ++++.|+.+|.|.|++..+.+.++..+..|...|+.+.|
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dG----------------kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF 332 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDG----------------KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF 332 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCC----------------cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence 233333344679999999999 667778888899999999999999888889999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEecC
Q 010051 339 SNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 339 s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
+||.+++++.+.|....|..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988865
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=7.9e-18 Score=138.91 Aligned_cols=309 Identities=14% Similarity=0.191 Sum_probs=209.7
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------CeEEEE
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------GELIIW 82 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~i~vw 82 (519)
-.++|+|.+|++|+..+|++-....|.||.......-. ...++..|...|+.|.|+|.. ..-+||
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~------~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWE------PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCce------eceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 35789999999999999999999999999988766332 345688899999999999984 445688
Q ss_pred EcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce----EEEecccccCeEEEEEcCCCC
Q 010051 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV----LQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~ 158 (519)
... .+..|+....+..++...+++.|+|.++.||+|+.-..|.||-++..+- .+.-+.+.+.|+++.|+|++-
T Consensus 83 ~~~---~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 83 TQP---SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ccC---CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 764 2345666667777999999999999999999999999999998865432 122245678899999999999
Q ss_pred eEEEeeCCCeEEEEecCCCCccccc-cccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEec
Q 010051 159 YVASLSSDRTCRIYANRPTKSKGVE-KMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPA 237 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 237 (519)
+|++|+.|+.+++|..--....... ..++... ......+.......+.+..+.|+|+|..|+-.+
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk--------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSK--------------MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccC--------------CcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 9999999999999964321110000 0000000 000000111114567899999999999999988
Q ss_pred CCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE-EeC
Q 010051 238 GSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI-YDT 316 (519)
Q Consensus 238 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v-wd~ 316 (519)
.+ ..+.+-|.......+..+....-+..++.|-.+...++.+...+ ..+++...+|.+.+ -++
T Consensus 226 Hd----------s~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~------P~lf~~~~~~~l~~~~~l 289 (361)
T KOG1523|consen 226 HD----------STVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG------PVLFVTDEEGGLSFARRL 289 (361)
T ss_pred CC----------CceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC------ceEEEeccccceeeehhc
Confidence 77 57777776554433444433447888888888877777777766 55777777652221 111
Q ss_pred C--CC-----------------------CceEEEeccccccEEEEEEcCCC----CEEEEEeCCCcEEEEEe
Q 010051 317 E--SV-----------------------PPIAILAGLHYAAITDIAWSNNA----RYLALSSQDGYCTLVEF 359 (519)
Q Consensus 317 ~--~~-----------------------~~~~~~~~~~~~~i~~~~~s~~g----~~l~~~~~dg~i~vwd~ 359 (519)
. .+ .......+.|...|+.+..-..+ ..+-+.+.||.+.+|++
T Consensus 290 d~p~~s~s~~lt~a~~kF~~~d~k~~~~~~~~~~~~~h~N~i~~l~~~~~~~~~i~~f~t~g~Dg~~viw~l 361 (361)
T KOG1523|consen 290 DAPKASSSSPLTSAWRKFLGMDRKGRTENDRSARWGAHQNCITSLRPFAGGKGKITKFSTSGLDGKLVIWDL 361 (361)
T ss_pred CCccccCCchhHHHHHHHhcccccccccccccccchHhHhhhhhhhecccCCcceEEEEecCccceEEEecC
Confidence 1 00 00111123366667766543322 23567889999999985
No 178
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=149.10 Aligned_cols=241 Identities=18% Similarity=0.232 Sum_probs=172.5
Q ss_pred eEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCce---------------------EEEecccccCeEEEEEcCC-
Q 010051 106 VLDLQWST-------DGAFLLSGSVDNSCIIWDVNKGSV---------------------LQILDAHFHYVQGVAWDPL- 156 (519)
Q Consensus 106 v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~h~~~v~~~~~~~~- 156 (519)
..|++|.. -|+++|.|+.|..|.|||+.-... -....+|+..|..+.|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999852110 0112368888889999864
Q ss_pred CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC-CCeEEE
Q 010051 157 SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD-GSFLLV 235 (519)
Q Consensus 157 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~ 235 (519)
.+.|++||.|.+|++||+.++++.... ..+...|.++.|+|. ...|++
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~-------------------------------~~~~k~Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSI-------------------------------THHGKKVQTLEWHPYEPSVLLS 304 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceeh-------------------------------hhcCCceeEEEecCCCceEEEe
Confidence 567899999999999999998753322 235678999999996 566666
Q ss_pred ecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
|+.+ +.+.++|.+.....-. .-...+.|..++|.|... ..++++..||.|+-+|
T Consensus 305 Gs~D----------~~V~l~D~R~~~~s~~-~wk~~g~VEkv~w~~~se---------------~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 305 GSYD----------GTVALKDCRDPSNSGK-EWKFDGEVEKVAWDPHSE---------------NSFFVSTDDGTVYYFD 358 (463)
T ss_pred cccc----------ceEEeeeccCccccCc-eEEeccceEEEEecCCCc---------------eeEEEecCCceEEeee
Confidence 6666 7999999985322111 122356789999998763 4578888899999999
Q ss_pred CCCC-CceEEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCc-cE
Q 010051 316 TESV-PPIAILAGLHYAAITDIAWSNNA-RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSED-MI 392 (519)
Q Consensus 316 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 392 (519)
++.. +++.++.. |..+|.++++++.- .+|++++.|+.|++|++......... .+.. .-+...|.++.|+- ..
T Consensus 359 ~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~---~~~~-~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 359 IRNPGKPVWTLKA-HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK---EHSF-KLGRLHCFALDPDVAFT 433 (463)
T ss_pred cCCCCCceeEEEe-ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc---cccc-cccceeecccCCCcceE
Confidence 9975 89999999 99999999998865 47889999999999999865332211 1111 12335667777765 44
Q ss_pred EEeecCCc-eeeecCCC
Q 010051 393 IEASTNDK-LVTAETKE 408 (519)
Q Consensus 393 l~~~~~d~-~i~~~~~~ 408 (519)
+++|+..+ ..+|+...
T Consensus 434 la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEecCccceEEEeeccc
Confidence 55666555 33776554
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.3e-17 Score=135.60 Aligned_cols=281 Identities=16% Similarity=0.210 Sum_probs=196.1
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC-CCEEEEEeCC-------CeEEEEEcCCC---------ceE
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVD-------NSCIIWDVNKG---------SVL 138 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d-------g~i~vwd~~~~---------~~~ 138 (519)
++.|.+.++...... -....+..|.+.|+.++-+|- .+.|+++..+ ..+.||.+... +++
T Consensus 39 dNqVhll~~d~e~s~---l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSE---LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred cceeEEEEecCccch---hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 466777666554322 233455568899999999994 4556666442 25789988642 233
Q ss_pred EEec-ccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCC
Q 010051 139 QILD-AHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETL 217 (519)
Q Consensus 139 ~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (519)
..+. .+-+.|.|+.|.|++..+++-. |..|.+|++........ .+.. -....+
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va-ev~s------------------------s~s~e~ 169 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA-EVLS------------------------SESAEM 169 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe-eecc------------------------cccccc
Confidence 3443 4456899999999999998776 88999999988653210 0000 000113
Q ss_pred cceeeEEEEcc--CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcc
Q 010051 218 PSFFRRLAWSP--DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFF 295 (519)
Q Consensus 218 ~~~i~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~ 295 (519)
....++-+|+| +|..+++.+. ++++.||+++.......-..|...|..+.|.|+-+.
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt~d-----------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~---------- 228 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATTSD-----------STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH---------- 228 (370)
T ss_pred cceecccccCCCCccceEEEeCC-----------CcEEEEEccchhhhcchhhhhcceeeeccCCCCceE----------
Confidence 34566889998 7888887665 489999999766655556678889999999998754
Q ss_pred cccceEEEEEecCCeEEEEeCCC-CCceEEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEEecCCcccce------
Q 010051 296 KLPYRLIFAIATLNSLYIYDTES-VPPIAILAGLHYAAITDIAWSNN-ARYLALSSQDGYCTLVEFENDELGIP------ 367 (519)
Q Consensus 296 ~~~~~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~~~~~~------ 367 (519)
++++++.||.|+|||.+. ..++..+.+ |...|.++.|+|. .++|++++.|..|.+|...+-.....
T Consensus 229 -----~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~d 302 (370)
T KOG1007|consen 229 -----ILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDD 302 (370)
T ss_pred -----EEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccc
Confidence 588899999999999985 457888888 9999999999996 46888999999999997643211000
Q ss_pred -------------eeecC----CcccccCCCCcccccCCccEE-EeecCCceeeecCCCCCcc
Q 010051 368 -------------ISLSG----NKVSKDENKSPLVTKSEDMII-EASTNDKLVTAETKEPDKR 412 (519)
Q Consensus 368 -------------~~~~~----~~~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~~~~~~~~~~ 412 (519)
..+.. ....++..|.+++||.-..++ |+-+-||.++.....+..+
T Consensus 303 ese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~~k 365 (370)
T KOG1007|consen 303 ESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRFLK 365 (370)
T ss_pred cccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChhhh
Confidence 01111 011356789999999877665 6678888887776655443
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=8.3e-18 Score=148.17 Aligned_cols=267 Identities=15% Similarity=0.240 Sum_probs=185.3
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCcccccccccc-------ccccc-cccCcceeEEEEccCCCeEEE
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTAS-------YQNSL-SYHGSAINILRFSPCGGELII 81 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~-~~~~~~v~~~~~~~~~~~i~v 81 (519)
..|+.-|.|+.|+.+...+.+++ |..+.+|.-.+......+..+. ..... .+....--.+..+.+||.+.|
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred cccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 36788889999998776666665 5556666443332222211110 01111 112223345667778888888
Q ss_pred EEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 82 WKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 82 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
.+-.. +....+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|.+..++.....+|.|++|.|+++.++
T Consensus 90 l~k~~-------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 90 LNKSA-------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred ecccc-------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 76432 35566778999999999999999999999999999999 47766666666778999999999987766
Q ss_pred EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
.+-. +.+.|=.+.. ...++....|.+-|.++.|+|....+++++.+
T Consensus 162 ~c~g-~h~~IKpL~~-------------------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED-- 207 (737)
T KOG1524|consen 162 FCQG-GHISIKPLAA-------------------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGED-- 207 (737)
T ss_pred EecC-CeEEEeeccc-------------------------------ccceeEEeccCcEEEEeecCccccceeecCCc--
Confidence 5532 3344433322 12234455678889999999999999998887
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
-..++||.. +.++..-..|+.+|++++|.|+. .+ .+|...+.+
T Consensus 208 --------~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd~-~~-------------------------~v~S~nt~R- 250 (737)
T KOG1524|consen 208 --------FRFKIWDAQ--GANLFTSAAEEYAITSVAFNPEK-DY-------------------------LLWSYNTAR- 250 (737)
T ss_pred --------eeEEeeccc--CcccccCChhccceeeeeecccc-ce-------------------------eeeeeeeee-
Confidence 478899974 45666777899999999999983 21 122222111
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
+.....+.|..++||+||..+++|+..|.+.+=.+
T Consensus 251 ---~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 251 ---FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ---ecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 33325678999999999999999999998766543
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=2.2e-18 Score=138.22 Aligned_cols=289 Identities=15% Similarity=0.153 Sum_probs=182.7
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------C
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------G 76 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~ 76 (519)
++-.+.+|.+.|+|+.|..+++ |.+|..-|.|.+|++.+......+.. .+...|..+...|+ |
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--------~g~~~it~lq~~p~d~l~tqgRd 76 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--------FGRLFITNLQSIPNDSLDTQGRD 76 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--------hccceeeceeecCCcchhhcCCC
Confidence 4455669999999999998775 88899999999999998775543321 35556666666663 6
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcC-----CCC----EEEEEeCCC-eEEEEEcCCCceEEEe----c
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST-----DGA----FLLSGSVDN-SCIIWDVNKGSVLQIL----D 142 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~----~l~~~~~dg-~i~vwd~~~~~~~~~~----~ 142 (519)
..+.+|++..... ..+ |.-.++++-|++ .++ .++.-++.. .+.+-|......++.. .
T Consensus 77 ~~L~lw~ia~s~~----i~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 77 PLLILWTIAYSAF----ISI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred ceEEEEEccCcce----EEE-----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 8899999875411 111 333344444443 211 122111111 1222222111122211 1
Q ss_pred ccccCeEEEEEcC-CCC--eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcc
Q 010051 143 AHFHYVQGVAWDP-LSK--YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPS 219 (519)
Q Consensus 143 ~h~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (519)
+..+.+.+..|.. ++. +++.|.++|.+.+||+.++.... .++. ..........+..
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~--~~~~-------------------~~kv~~~~ash~q 206 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII--QLPQ-------------------SSKVESPNASHKQ 206 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee--cccc-------------------ccccccchhhccC
Confidence 2335667766542 333 35678889999999998863211 1100 0111223345667
Q ss_pred eeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccc--c-cCCCCCCCeEEEEEcCCcccccccCCCCccc
Q 010051 220 FFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA--L-QLPGASKPVVAVRFCPLAFNLRESNSAGFFK 296 (519)
Q Consensus 220 ~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~-~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~ 296 (519)
++.++.|.+.-..=+.++.+ ..+..|++....... . ...-.+-.|..+..-||+
T Consensus 207 pvlsldyas~~~rGisgga~----------dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~------------- 263 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGAD----------DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG------------- 263 (323)
T ss_pred cceeeeechhhcCCcCCCcc----------ccceeeeeccccCcccccceEEecCCCccceEEccCC-------------
Confidence 78888888755444554444 355556654332111 1 111223457778888888
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 297 LPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 297 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
+.+++++.|++|+||+.++..++..+.- |...|++++|+|+..++|.++.|++|.+|++
T Consensus 264 ---KIlATAGWD~RiRVyswrtl~pLAVLky-Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 ---KILATAGWDHRIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---cEEeecccCCcEEEEEeccCCchhhhhh-hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 6688889999999999999999999999 9999999999999999999999999999986
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=137.41 Aligned_cols=237 Identities=19% Similarity=0.197 Sum_probs=175.2
Q ss_pred EEecCCCCCEEEEEEe-------cCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCc---ceeEEEEccCC
Q 010051 7 QINWHDTKPVLTLDFH-------PISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGS---AINILRFSPCG 76 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~s-------p~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~ 76 (519)
.+.+.-...|...+|- |+..++|+.+.+.-|++||.-+|+....+... .|.+ ...+++|+|||
T Consensus 98 ~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-------dh~de~taAhsL~Fs~DG 170 (406)
T KOG2919|consen 98 SYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY-------DHQDEYTAAHSLQFSPDG 170 (406)
T ss_pred eEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhh-------hhHHhhhhheeEEecCCC
Confidence 3445556778888886 56779999999999999999999876654321 1222 24689999996
Q ss_pred --------CeEEEEEcc-cCCCcccceeeec-cccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccc
Q 010051 77 --------GELIIWKLH-TTETGQAWKVLKN-LSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHF 145 (519)
Q Consensus 77 --------~~i~vw~~~-~~~~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 145 (519)
..|+++|+. .+.....+..+.. -.+..+-+.|++|+| +.+.++.|+....+-||.-..+.+++.+.+|.
T Consensus 171 eqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~ 250 (406)
T KOG2919|consen 171 EQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG 250 (406)
T ss_pred CeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence 678899984 3322111111111 123466789999999 45689999999999999988899999999999
Q ss_pred cCeEEEEEcCCCCeEEEeeC-CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcc---ee
Q 010051 146 HYVQGVAWDPLSKYVASLSS-DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPS---FF 221 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i 221 (519)
+.|+.++|.++|+.|++|.. |-.|..||++..+.... ....+.. .-
T Consensus 251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~------------------------------~L~rhv~~TNQR 300 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY------------------------------ALERHVGDTNQR 300 (406)
T ss_pred CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh------------------------------hhhhhccCccce
Confidence 99999999999999999876 77899999997642211 0001100 01
Q ss_pred eEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccC
Q 010051 222 RRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESN 290 (519)
Q Consensus 222 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 290 (519)
--+...|+|++|+++..+ +.|++||+......+..+..+...++.++++|--..+++++
T Consensus 301 I~FDld~~~~~LasG~td----------G~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 301 ILFDLDPKGEILASGDTD----------GSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred EEEecCCCCceeeccCCC----------ccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 135567899999998766 79999999988888888889999999999999865544443
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.3e-17 Score=141.98 Aligned_cols=289 Identities=17% Similarity=0.265 Sum_probs=184.3
Q ss_pred EEEEccCCCeEEEEEcccCCCcc---cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--------C---
Q 010051 69 ILRFSPCGGELIIWKLHTTETGQ---AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN--------K--- 134 (519)
Q Consensus 69 ~~~~~~~~~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--------~--- 134 (519)
.++-..-|..|++|.+....... ....+..|..|...|+++.|+|+|..||+|+.+|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 34444457899999998765544 567788899999999999999999999999999999999876 2
Q ss_pred -----CceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccc
Q 010051 135 -----GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKN 209 (519)
Q Consensus 135 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (519)
......+.+|...|..++|+|+++++++++-|..+++||+..++...
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---------------------------- 159 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---------------------------- 159 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe----------------------------
Confidence 12345678899999999999999999999999999999999876321
Q ss_pred eeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeec-ccceEEEEe-------cc-C-CCcccccCCC--CCCCeEEE
Q 010051 210 HLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSE-SINSAYIFS-------RK-D-LSRPALQLPG--ASKPVVAV 277 (519)
Q Consensus 210 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~-~~~~i~i~~-------~~-~-~~~~~~~~~~--~~~~v~~~ 277 (519)
....|...+..++|.|-++++++-+.+........ ....++... .. . .......+.. -..-...+
T Consensus 160 ---~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 160 ---ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred ---eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 12345677888999999998887666531111100 000000000 00 0 0000000100 01124467
Q ss_pred EEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC-CCceEEEeccccccEEEEEEcC----------------
Q 010051 278 RFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES-VPPIAILAGLHYAAITDIAWSN---------------- 340 (519)
Q Consensus 278 ~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~s~---------------- 340 (519)
+|+|+|..+++... .+....+.. -+..++|+-.. .++...+.. ...+...+.|+|
T Consensus 237 sfTPdG~llvtPag--~~~~g~~~~-----~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr~~pVy~elrp~~~~~~~~~ 308 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAG--LFKVGGGVF-----RNTSYVFSRKDLKRPAARLPS-PKKPALAVRFSPVYYELRPLSSEKFLFV 308 (434)
T ss_pred ccCCCCcEEEcccc--eeeeCCcee-----eceeEeeccccccCceeecCC-CCcceEEEEeeeeEEEeccccccccccc
Confidence 88999977765432 110000100 24556665442 234444444 444555555554
Q ss_pred --CCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 341 --NARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 341 --~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
-+-.+|.++ -..|+|||.+.-. ++..- .+.+...++.++|++||..|+..+.|+..
T Consensus 309 lpyrlvfaiAt-~~svyvydtq~~~---P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 309 LPYRLVFAIAT-KNSVYVYDTQTLE---PLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred cccceEEEEee-cceEEEecccccc---ceEEE--eeeeeeeecceeecCCCcEEEEeccCCce
Confidence 223355555 4679999987642 22211 22345789999999999999999998876
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.6e-17 Score=155.12 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=152.2
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCce--EEEecccccCeEE
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNKGSV--LQILDAHFHYVQG 150 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~--~~~~~~h~~~v~~ 150 (519)
+..|.+||.... ....+..|...+..++|||||+.|+.++.+ ..|++||+.+++. +..+.+| ...
T Consensus 183 ~~~i~i~d~dg~-------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~ 252 (429)
T PRK01742 183 PYEVRVADYDGF-------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGA 252 (429)
T ss_pred eEEEEEECCCCC-------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCc
Confidence 368999998644 234455678889999999999999987654 4799999988754 3333333 346
Q ss_pred EEEcCCCCeEEEee-CCCeEEEE--ecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc
Q 010051 151 VAWDPLSKYVASLS-SDRTCRIY--ANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS 227 (519)
Q Consensus 151 ~~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (519)
++|+|||+.|+.++ .+|.+.|| |+.++.... ...+...+..+.|+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------------lt~~~~~~~~~~wS 300 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------------LTSGAGNNTEPSWS 300 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe--------------------------------eccCCCCcCCEEEC
Confidence 89999999888764 68876666 444432110 01122345679999
Q ss_pred cCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec
Q 010051 228 PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 228 p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
|||+.|++++... +...+|++.........+ .+.. ....|+|+|+. ++..+.
T Consensus 301 pDG~~i~f~s~~~---------g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~----------------ia~~~~ 352 (429)
T PRK01742 301 PDGQSILFTSDRS---------GSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT----------------LVMING 352 (429)
T ss_pred CCCCEEEEEECCC---------CCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE----------------EEEEcC
Confidence 9999988765432 345556554322222222 2332 45789999854 444444
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCccccc
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTK 387 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 387 (519)
+ .+.+||+.+++....... + ....+.|+|||++|+.++.+|.+.+|.+....-.....+.++. +.+..++||
T Consensus 353 ~-~i~~~Dl~~g~~~~lt~~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~----g~~~~p~ws 424 (429)
T PRK01742 353 D-NVVKQDLTSGSTEVLSST-F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD----GQVKFPAWS 424 (429)
T ss_pred C-CEEEEECCCCCeEEecCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC----CCCCCcccC
Confidence 3 466799988875533322 2 3456889999999999999999998887532222333343332 456778888
Q ss_pred CC
Q 010051 388 SE 389 (519)
Q Consensus 388 ~~ 389 (519)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 73
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=8.2e-16 Score=140.82 Aligned_cols=271 Identities=13% Similarity=0.128 Sum_probs=170.2
Q ss_pred ccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC-CCce--EEEecccccCe
Q 010051 73 SPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGS-VDNSCIIWDVN-KGSV--LQILDAHFHYV 148 (519)
Q Consensus 73 ~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~-~~~~--~~~~~~h~~~v 148 (519)
++.++.|.+|++.+.. .+..+..+. +......++++|++++|++++ .++.|.+|++. ++.. +.... .....
T Consensus 8 ~~~~~~I~~~~~~~~g---~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 8 SPESQQIHVWNLNHEG---ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred cCCCCCEEEEEECCCC---ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 4567999999996431 223444443 345677899999999988765 47889999996 3432 22222 23356
Q ss_pred EEEEEcCCCCeEEEeeC-CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc
Q 010051 149 QGVAWDPLSKYVASLSS-DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS 227 (519)
Q Consensus 149 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (519)
..++|+|++++|++++. ++.|.+|++........ .... .........++++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~------~~~~----------------------~~~~~~~~~~~~~ 134 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA------PIQI----------------------IEGLEGCHSANID 134 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC------ceee----------------------ccCCCcccEeEeC
Confidence 78999999999888765 88999999864321100 0000 0011234578899
Q ss_pred cCCCeEEEecCCcceeeeecccceEEEEeccCCCccc------ccCCCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 228 PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA------LQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 228 p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~------~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
|+|++++++.... +.|.+|++....... .... .......++|+|+|+ +
T Consensus 135 p~g~~l~v~~~~~---------~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~----------------~ 188 (330)
T PRK11028 135 PDNRTLWVPCLKE---------DRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQ----------------Y 188 (330)
T ss_pred CCCCEEEEeeCCC---------CEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCC----------------E
Confidence 9999998765432 689999997533221 0111 123456899999984 4
Q ss_pred EEEEec-CCeEEEEeCCC--CC--ceEEEecc-----ccccEEEEEEcCCCCEEEEEeC-CCcEEEEEecCCcccceeee
Q 010051 302 IFAIAT-LNSLYIYDTES--VP--PIAILAGL-----HYAAITDIAWSNNARYLALSSQ-DGYCTLVEFENDELGIPISL 370 (519)
Q Consensus 302 ~~~~~~-d~~i~vwd~~~--~~--~~~~~~~~-----~~~~i~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~~~~~~~~ 370 (519)
++++.. ++.|.+|++.. ++ .+..+... +......+.|+|+|++|+++.. ++.|.+|+++..... ..+
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~--~~~ 266 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV--LSF 266 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--EEE
Confidence 555544 78999999973 32 22232210 1122346899999999998864 689999999754311 122
Q ss_pred cCCcccccCCCCcccccCCccEEEeecC-Ccee-eec
Q 010051 371 SGNKVSKDENKSPLVTKSEDMIIEASTN-DKLV-TAE 405 (519)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~-d~~i-~~~ 405 (519)
.++... ......+.++|||++|+++.. ++.+ +|.
T Consensus 267 ~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 267 EGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred eEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 222111 134567899999999987763 4444 554
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=5.8e-18 Score=149.13 Aligned_cols=205 Identities=15% Similarity=0.157 Sum_probs=160.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEec
Q 010051 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITK 195 (519)
Q Consensus 116 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 195 (519)
..|+.++.||.+.+.+ ..++.-..+..|.+.+.+-.|+|+|.-|+++++||.|++|.-...-.
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR---------------- 138 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR---------------- 138 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----------------
Confidence 4688889999999988 47777778899999999999999999999999999999997543210
Q ss_pred cCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeE
Q 010051 196 AGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVV 275 (519)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~ 275 (519)
-...+....|+|++|.|+...++.+.++ .++|-.+... ..+.....|.+-|.
T Consensus 139 ----------------Stl~Q~~~~v~c~~W~p~S~~vl~c~g~-----------h~~IKpL~~n-~k~i~WkAHDGiiL 190 (737)
T KOG1524|consen 139 ----------------STVVQNEESIRCARWAPNSNSIVFCQGG-----------HISIKPLAAN-SKIIRWRAHDGLVL 190 (737)
T ss_pred ----------------HHHhhcCceeEEEEECCCCCceEEecCC-----------eEEEeecccc-cceeEEeccCcEEE
Confidence 0011235679999999999988887765 6666666433 33456678999999
Q ss_pred EEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010051 276 AVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCT 355 (519)
Q Consensus 276 ~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~ 355 (519)
++.|++.. +.+++|+.|-..++||.. |..+..-.. |..+|++++|.|+ ..++.++. .++|
T Consensus 191 ~~~W~~~s----------------~lI~sgGED~kfKvWD~~-G~~Lf~S~~-~ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 191 SLSWSTQS----------------NIIASGGEDFRFKIWDAQ-GANLFTSAA-EEYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred EeecCccc----------------cceeecCCceeEEeeccc-CcccccCCh-hccceeeeeeccc-cceeeeee-eeee
Confidence 99999987 678888888899999976 666666666 9999999999999 66666654 3344
Q ss_pred EEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 356 LVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 356 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
++. ..-+.+..++||+||..+++|...+.+
T Consensus 251 ---~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 251 ---FSS--------------PRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ---ecC--------------CCccceEEEEEcCCCceeeccccCceE
Confidence 111 124688899999999999999877776
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=5.1e-16 Score=130.91 Aligned_cols=281 Identities=16% Similarity=0.197 Sum_probs=180.0
Q ss_pred EEEEEEecCCCEEEEEcCC--CcEEEEEecCCccccccccccccccccccCcceeEEEEccC------CCeEEEEEcccC
Q 010051 16 VLTLDFHPISGLLATGGAD--YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------GGELIIWKLHTT 87 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~i~vw~~~~~ 87 (519)
|.-+-|| ..++|..+.+ ..++|.++..+..+..+. .+..|.+|.++.+ ...|+|||++..
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~----------fpt~IL~VrmNr~RLvV~Lee~IyIydI~~M 116 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF----------FPTSILAVRMNRKRLVVCLEESIYIYDIKDM 116 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe----------cCCceEEEEEccceEEEEEcccEEEEecccc
Confidence 3444455 4466655543 347888877766555443 4556666666665 366999999987
Q ss_pred CCcccceeeeccc---cCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEE
Q 010051 88 ETGQAWKVLKNLS---FHRKDVLDLQWSTDGAFLLSGS--VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS 162 (519)
Q Consensus 88 ~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 162 (519)
+.+.++. .+...+.++++++.+.+|+.-+ ..|.|.+||+.+-+.+..+..|.+.+.+++|+++|.+|||
T Consensus 117 ------klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llAT 190 (391)
T KOG2110|consen 117 ------KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLAT 190 (391)
T ss_pred ------eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEE
Confidence 5555543 3556677777777777888543 3689999999999999999999999999999999999999
Q ss_pred eeCCCe-EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc
Q 010051 163 LSSDRT-CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK 241 (519)
Q Consensus 163 ~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 241 (519)
+++.|+ |||+.+..++... -++.......|++++|+|++++|++++..
T Consensus 191 ASeKGTVIRVf~v~~G~kl~-----------------------------eFRRG~~~~~IySL~Fs~ds~~L~~sS~T-- 239 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLY-----------------------------EFRRGTYPVSIYSLSFSPDSQFLAASSNT-- 239 (391)
T ss_pred eccCceEEEEEEcCCccEee-----------------------------eeeCCceeeEEEEEEECCCCCeEEEecCC--
Confidence 999997 7999998775321 22333335678899999999999998877
Q ss_pred eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEE-EcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC
Q 010051 242 ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVR-FCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP 320 (519)
Q Consensus 242 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~ 320 (519)
.+|++|.+...... ..+.+-.... +.+-.+. +.+---.+.-.+||....-
T Consensus 240 --------eTVHiFKL~~~~~~-----~~~~p~~~~~~~~~~sk~----------------~~sylps~V~~~~~~~R~F 290 (391)
T KOG2110|consen 240 --------ETVHIFKLEKVSNN-----PPESPTAGTSWFGKVSKA----------------ATSYLPSQVSSVLDQSRKF 290 (391)
T ss_pred --------CeEEEEEecccccC-----CCCCCCCCCcccchhhhh----------------hhhhcchhhhhhhhhccce
Confidence 68999988643311 1110000000 0000000 0000000122335554333
Q ss_pred ceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCc
Q 010051 321 PIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNK 374 (519)
Q Consensus 321 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 374 (519)
....+.......+..+.=.+...++..++.||.++.|.+...+-+....+..|.
T Consensus 291 At~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~ 344 (391)
T KOG2110|consen 291 ATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHF 344 (391)
T ss_pred eEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeec
Confidence 333333211113333333357789999999999999999877666666665554
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.3e-18 Score=148.97 Aligned_cols=296 Identities=21% Similarity=0.243 Sum_probs=210.4
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-----------C
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-----------G 76 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~ 76 (519)
.+..|.+.|..+.|+..|..|++|+.|..|.+||+..++....+ ..+|...|....|-|. +
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--------~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--------ESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--------ccccccchhhhhccCCCCCcCceecccc
Confidence 45679999999999999999999999999999999988876554 4457666666666664 5
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEe---ccccc---CeE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQIL---DAHFH---YVQ 149 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~---~v~ 149 (519)
|.|++=.+...... .....+..|.+.|.-++.-|+. .-|++++.|+.+.-+|++.+.....+ ..+.. ...
T Consensus 209 gqvr~s~i~~t~~~---e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 209 GQVRVSEILETGYV---ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred Cceeeeeeccccce---ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 77776555433211 2245566699999999999965 46889999999999999887644333 22333 467
Q ss_pred EEEEcCCCC-eEEEeeCCCeEEEEecCCCCcccccc-ccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc
Q 010051 150 GVAWDPLSK-YVASLSSDRTCRIYANRPTKSKGVEK-MNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS 227 (519)
Q Consensus 150 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (519)
.++..|... .+++++.|..+++||.+......... +...|.+. +.. .....|++++|+
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h------------------l~~--d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH------------------LVE--DDPVNITGLVYS 345 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc------------------ccc--cCcccceeEEec
Confidence 788888554 78999999999999988754332211 11111111 111 334568999999
Q ss_pred cCCCeEEEecCCcceeeeecccceEEEEeccCCCc-----------cc-ccCCCCCC--CeEEEEE-cCCcccccccCCC
Q 010051 228 PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR-----------PA-LQLPGASK--PVVAVRF-CPLAFNLRESNSA 292 (519)
Q Consensus 228 p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-----------~~-~~~~~~~~--~v~~~~~-sp~~~~l~~~~~~ 292 (519)
.++.-|+++..+ -.||++...-... .. ..+.+|.. .|..+.| -|..
T Consensus 346 h~~sElLaSYnD----------e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs--------- 406 (559)
T KOG1334|consen 346 HDGSELLASYND----------EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS--------- 406 (559)
T ss_pred CCccceeeeecc----------cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------
Confidence 888777776666 3566664321111 11 22556654 3555554 3444
Q ss_pred CcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 293 GFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 293 g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
.++++|+.=|.|.||+-.+++.+..+.+ ...-|+||.=+|--..||+++.|..|+||--..
T Consensus 407 -------EyVvSGSDCGhIFiW~K~t~eii~~Meg-Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 407 -------EYVVSGSDCGHIFIWDKKTGEIIRFMEG-DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred -------ceEEecCccceEEEEecchhHHHHHhhc-ccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 5677777778999999999999999988 445899999999999999999999999997643
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.5e-16 Score=148.48 Aligned_cols=268 Identities=16% Similarity=0.207 Sum_probs=190.5
Q ss_pred CcEEEEEecCCc-cccccccccccccccccCcceeEEEEccC----------CCeEEEEEcccCCCcccceeeeccccCC
Q 010051 35 YDIKIWLINSGE-KQKKIPTASYQNSLSYHGSAINILRFSPC----------GGELIIWKLHTTETGQAWKVLKNLSFHR 103 (519)
Q Consensus 35 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~~~~~~~~~~~~~~~~~~~ 103 (519)
+.+.||++.... ....+ .....|.++.|+|. +|+|.+||++.+..............|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~----------~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL----------ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCCCCceEEE----------ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 468999988662 22211 24556777777776 5999999999875432222233344699
Q ss_pred CCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCce------EEEec------ccccCeEEEEEcC-CCCeEEEeeCCCe
Q 010051 104 KDVLDLQWSTDGA--FLLSGSVDNSCIIWDVNKGSV------LQILD------AHFHYVQGVAWDP-LSKYVASLSSDRT 168 (519)
Q Consensus 104 ~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~------~~~~~------~h~~~v~~~~~~~-~~~~l~~~~~dg~ 168 (519)
.+++.+.|..+-. -+++++.||.|..|+++.-.. ..... .....++++.|.+ +-..|+.|+++|.
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 9999999977544 499999999999998865322 11111 1234688999987 4567899999998
Q ss_pred EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecc
Q 010051 169 CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~ 248 (519)
|..-+-...+...... .........|.+.|+.+.++|-+..++.++++
T Consensus 372 v~~~~r~g~~~~~~~~-----------------------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gD--------- 419 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVS-----------------------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGD--------- 419 (555)
T ss_pred EEEEeccCCccccccc-----------------------ccccccccccCcceEeeecCCCccceeeeecc---------
Confidence 8774443332211000 00011233567889999999998888887777
Q ss_pred cceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC--CceEEEe
Q 010051 249 INSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV--PPIAILA 326 (519)
Q Consensus 249 ~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~--~~~~~~~ 326 (519)
-.++||...-...++..+..+...+++++|||... ..++++..+|.|.+||+... .++....
T Consensus 420 -W~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp---------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 420 -WTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP---------------AVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred -ceeEeccccCCCCcchhhhhccceeeeeEEcCcCc---------------eEEEEEcCCCceehhhhhccccCCccccc
Confidence 58999998756678888888888899999999764 34777788999999998753 4555555
Q ss_pred ccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 327 GLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 327 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
- +....+.+.|+++|+.|++|...|.+.+|++..
T Consensus 484 ~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 V-CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c-cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4 456678889999999999999999999999964
No 190
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-16 Score=134.31 Aligned_cols=295 Identities=18% Similarity=0.248 Sum_probs=187.7
Q ss_pred CCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------CeEEEEEc
Q 010051 14 KPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG---------GELIIWKL 84 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~i~vw~~ 84 (519)
-.+..++|++.-..+|++..|-.|+||+-.. .+...++ ......|.+++|-|.+ +-|.||..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk--------s~sQrnvtclawRPlsaselavgCr~gIciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK--------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec--------chhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence 4578899999777889999999999999776 3322221 1245678999999875 56889987
Q ss_pred ccCCCccc--------ceeeeccccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceEEEecccccCeEEEEEcC
Q 010051 85 HTTETGQA--------WKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 85 ~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 155 (519)
........ ...+....+| ..|++|.|++||..|++++. |..|.|||+.++..+......-+.++-+.|+|
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 64321111 0112223345 68999999999999999886 67899999999987665544557889999999
Q ss_pred CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEE
Q 010051 156 LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLV 235 (519)
Q Consensus 156 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 235 (519)
|+.+|++++-|+..++|+......... + ...++.|....|+|+|++|+.
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~er-----------------------------w--~lgsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKER-----------------------------W--ILGSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecc-----------------------------e--eccCCceeeeeecCCCCEEEE
Confidence 999999999999999996543221100 0 012357889999999999887
Q ss_pred ecCCc-ceeeeeccc------------ceEEEEeccCCCcccccCCC---CCCCeEEEEEcCCcccccccCCCCcccccc
Q 010051 236 PAGSY-KISSMSESI------------NSAYIFSRKDLSRPALQLPG---ASKPVVAVRFCPLAFNLRESNSAGFFKLPY 299 (519)
Q Consensus 236 ~~~~~-~~~~~~~~~------------~~i~i~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~ 299 (519)
+.... .++...... ....+-|+.. +....+ --+.+.+++|.|.|.+||.....+.+...
T Consensus 298 ~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e----~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~- 372 (445)
T KOG2139|consen 298 ACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE----VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL- 372 (445)
T ss_pred EEcCCceEEEEeecCCCccccCcccceeeeeeccchh----hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh-
Confidence 65432 111110000 0011111110 000111 13578899999999888766554421111
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEecc--ccccEEEEEEcC---CCCEEEEEeCCCcEEEEEecC
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGL--HYAAITDIAWSN---NARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~i~~~~~s~---~g~~l~~~~~dg~i~vwd~~~ 361 (519)
....|.+||.+....+.....+ ....-..++|+| +|++|..+=.-|.+.-|++.-
T Consensus 373 -------~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 373 -------CKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred -------hhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 1245778887765444333110 111234456665 567787787788888887753
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-16 Score=133.01 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=153.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC--CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEE
Q 010051 116 AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP--LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVI 193 (519)
Q Consensus 116 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 193 (519)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||++...........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------- 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence 4688888899999999999999999999999999999976 4667899999999999999986543222111
Q ss_pred eccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccc-cCCCCCC
Q 010051 194 TKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL-QLPGASK 272 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~ 272 (519)
...+.+..+++..-.++.+++++.- ....-.+.+||.+...+++. ....|..
T Consensus 114 ---------------------~~~~~~f~~ld~nck~~ii~~GtE~------~~s~A~v~lwDvR~~qq~l~~~~eSH~D 166 (376)
T KOG1188|consen 114 ---------------------QQSGTPFICLDLNCKKNIIACGTEL------TRSDASVVLWDVRSEQQLLRQLNESHND 166 (376)
T ss_pred ---------------------CCCCCcceEeeccCcCCeEEecccc------ccCceEEEEEEeccccchhhhhhhhccC
Confidence 1112445577777677778777543 33446899999998877544 4568999
Q ss_pred CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC---ceEEEeccccccEEEEEEcCCC-CEEEEE
Q 010051 273 PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP---PIAILAGLHYAAITDIAWSNNA-RYLALS 348 (519)
Q Consensus 273 ~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~i~~~~~s~~g-~~l~~~ 348 (519)
.|+++.|+|... +++++|+.||.|.+||+.... .+...-. |...|..+.|..++ +.|.+-
T Consensus 167 DVT~lrFHP~~p---------------nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 167 DVTQLRFHPSDP---------------NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred cceeEEecCCCC---------------CeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEE
Confidence 999999999764 569999999999999998542 2222223 67889999999988 457788
Q ss_pred eCCCcEEEEEecCCc
Q 010051 349 SQDGYCTLVEFENDE 363 (519)
Q Consensus 349 ~~dg~i~vwd~~~~~ 363 (519)
+...+..+|+++.+.
T Consensus 231 TH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 231 THMETFAIYELEDGS 245 (376)
T ss_pred EccCceeEEEccCCC
Confidence 889999999999875
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=3.5e-18 Score=158.20 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=198.4
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEe
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 173 (519)
+.+..+.+|...|.|+.|...|.++++|+.|..++||.++++.++..+.+|.+.|+.++.+.+...+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45667789999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEE
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAY 253 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~ 253 (519)
+..+.+.. -...|.+.|++++|+|-. +.+.+ +.++
T Consensus 261 l~~~~pvs-------------------------------vLrghtgavtaiafsP~~----sss~d----------gt~~ 295 (1113)
T KOG0644|consen 261 LPDGAPVS-------------------------------VLRGHTGAVTAIAFSPRA----SSSDD----------GTCR 295 (1113)
T ss_pred cCCCchHH-------------------------------HHhccccceeeeccCccc----cCCCC----------CceE
Confidence 98875322 123567889999999965 33333 7999
Q ss_pred EEeccCCCcccccC-----CCCCCCeEEEEEcCCcccccccCCCCcccccc---------------------eEEEEEec
Q 010051 254 IFSRKDLSRPALQL-----PGASKPVVAVRFCPLAFNLRESNSAGFFKLPY---------------------RLIFAIAT 307 (519)
Q Consensus 254 i~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~---------------------~~~~~~~~ 307 (519)
+||.+ . .+.... ......+..+.|...+..+++++.++....+. .+.++.-.
T Consensus 296 ~wd~r-~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 296 IWDAR-L-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred ecccc-c-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence 99987 1 111111 12234577788888888888888877654321 12223334
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccc
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNAR-YLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVT 386 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
+-.+.+|++.+|..+..+.+ |...+..+.++|-.. ...+++.||...|||+..+-..+.+. .+ ...+...+|
T Consensus 374 ~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~g-----h~kl~d~kF 446 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IG-----HGKLVDGKF 446 (1113)
T ss_pred eeEeeeeecccchhhhhhcc-cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-cc-----cceeecccc
Confidence 55788999999999999998 999999999999664 45678999999999998775444444 22 346778899
Q ss_pred cCCccEEEeecCCcee
Q 010051 387 KSEDMIIEASTNDKLV 402 (519)
Q Consensus 387 s~~~~~l~~~~~d~~i 402 (519)
|+||..++...+-+-+
T Consensus 447 Sqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 447 SQDGTSIALSDDHGQL 462 (1113)
T ss_pred CCCCceEecCCCCCce
Confidence 9999888887766655
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=145.27 Aligned_cols=252 Identities=19% Similarity=0.199 Sum_probs=163.9
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEccc
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHT 86 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~ 86 (519)
+.+.||++-|.|++|+.+|.+||+|+.|-.+.|||.-..+.+..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------------ 87 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------------------------------------ 87 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------------------------------------
Confidence 45689999999999999999999999999999999875543321
Q ss_pred CCCcccceeeeccccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCC----------ceEEEecccccCeEEEEEc
Q 010051 87 TETGQAWKVLKNLSFHRKDVLDLQWST--DGAFLLSGSVDNSCIIWDVNKG----------SVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~ 154 (519)
.-++|...|.++.|-| +.+.+++|..|..|+++|+... .....+..|...|..++-.
T Consensus 88 -----------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~ 156 (758)
T KOG1310|consen 88 -----------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA 156 (758)
T ss_pred -----------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC
Confidence 2245999999999998 4578999999999999999851 2345567899999999999
Q ss_pred CCC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe-
Q 010051 155 PLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF- 232 (519)
Q Consensus 155 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~- 232 (519)
|++ +.|.++++||+|+.+|++....-.... .+.. .+......--...++.++|...+
T Consensus 157 p~~PhtfwsasEDGtirQyDiREph~c~p~~---~~~~------------------~l~ny~~~lielk~ltisp~rp~~ 215 (758)
T KOG1310|consen 157 PNGPHTFWSASEDGTIRQYDIREPHVCNPDE---DCPS------------------ILVNYNPQLIELKCLTISPSRPYY 215 (758)
T ss_pred CCCCceEEEecCCcceeeecccCCccCCccc---cccH------------------HHHHhchhhheeeeeeecCCCCce
Confidence 988 789999999999999999743211000 0000 00000001123568999997655
Q ss_pred EEEecCCcceeeeecccceEEEEeccCCCcccccCCC----CCCCeEEE-EEcCCcccccccCCCCcccccceEEEEEec
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPG----ASKPVVAV-RFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~----~~~~v~~~-~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
|++|+.+ .-.++||.+...++...-.. ......|+ .|+|++
T Consensus 216 laVGgsd----------pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h------------------------ 261 (758)
T KOG1310|consen 216 LAVGGSD----------PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH------------------------ 261 (758)
T ss_pred EEecCCC----------chhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc------------------------
Confidence 5555444 57888996433222111110 11112222 234432
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeec
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
+ ....+..... ...++-+.|+|+|.-|++.=..-.|+++|+..++...++.++
T Consensus 262 ---l---kn~~gn~~~~-----~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 262 ---L---KNSQGNLDRY-----ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred ---c---cCcccccccc-----eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 1 0011111111 123677899999987766555567999999987655554443
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2.7e-15 Score=137.36 Aligned_cols=270 Identities=13% Similarity=0.186 Sum_probs=161.3
Q ss_pred EEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCeEEEEEcccCCCcccceeeec
Q 010051 29 ATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGELIIWKLHTTETGQAWKVLKN 98 (519)
Q Consensus 29 a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~~~~~~~~~~~~~~ 98 (519)
++...++.|++|++.+...+..+.. +. +.+....++++|+ ++.|.+|++.... .+.....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~------~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g---~l~~~~~ 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQV------VD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG---ALTFAAE 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeE------Ee-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC---ceEEeee
Confidence 3446689999999964322211111 11 1233444555555 4666778875211 1122222
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC-Cc---eEEEecccccCeEEEEEcCCCCeEEEee-CCCeEEEE
Q 010051 99 LSFHRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNK-GS---VLQILDAHFHYVQGVAWDPLSKYVASLS-SDRTCRIY 172 (519)
Q Consensus 99 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 172 (519)
.. .......++|+|++++|++++. ++.|.+|++.+ +. .+..+.+ .....+++++|+++++++++ .++.|.+|
T Consensus 76 ~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 76 SP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred ec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 22 2335678999999999988765 88999999974 32 2232322 23467788999999886555 56999999
Q ss_pred ecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceE
Q 010051 173 ANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSA 252 (519)
Q Consensus 173 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i 252 (519)
|+........... . ... .........++|+|+|++++++.... +.+
T Consensus 154 d~~~~g~l~~~~~--~----------------------~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~---------~~v 199 (330)
T PRK11028 154 TLSDDGHLVAQEP--A----------------------EVT-TVEGAGPRHMVFHPNQQYAYCVNELN---------SSV 199 (330)
T ss_pred EECCCCcccccCC--C----------------------cee-cCCCCCCceEEECCCCCEEEEEecCC---------CEE
Confidence 9976321100000 0 000 00123355799999999998876522 688
Q ss_pred EEEeccCCC---cccccCC---C---CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe-cCCeEEEEeCCCCCce
Q 010051 253 YIFSRKDLS---RPALQLP---G---ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA-TLNSLYIYDTESVPPI 322 (519)
Q Consensus 253 ~i~~~~~~~---~~~~~~~---~---~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~-~d~~i~vwd~~~~~~~ 322 (519)
.+|++.... .....+. . +......+.|+|+++ +++++. .++.|.+|++......
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~----------------~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR----------------HLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC----------------EEEEecCCCCeEEEEEEeCCCCe
Confidence 889886321 1111111 1 112234688999984 445543 4689999998654322
Q ss_pred EEEeccc---cccEEEEEEcCCCCEEEEEeC-CCcEEEEEecC
Q 010051 323 AILAGLH---YAAITDIAWSNNARYLALSSQ-DGYCTLVEFEN 361 (519)
Q Consensus 323 ~~~~~~~---~~~i~~~~~s~~g~~l~~~~~-dg~i~vwd~~~ 361 (519)
..+.+ + ......+.|+|+|++|++++. +++|.+|+++.
T Consensus 264 ~~~~~-~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 LSFEG-HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeE-EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 22222 1 124567899999999998775 89999999863
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=7.1e-15 Score=141.51 Aligned_cols=284 Identities=29% Similarity=0.433 Sum_probs=209.9
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcC-CCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGA-DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 75 (519)
........|...|.+++|+|++.++++++. |+.+++|++..+..... +..|...+.+++|+|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---------LAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---------eccCCCceEEEEEcCCcceEEEE
Confidence 455667889999999999999999988885 99999999988554433 4447888888888854
Q ss_pred ---CCeEEEEEcccCCCcccceeee-ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-EEEecccccCeEE
Q 010051 76 ---GGELIIWKLHTTETGQAWKVLK-NLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV-LQILDAHFHYVQG 150 (519)
Q Consensus 76 ---~~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~ 150 (519)
++.|.+||...+ .... .+.+|.... ...|++++.++++++.|+.+++|++..... +..+..|...|.+
T Consensus 217 ~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 217 GSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred ecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 577889977644 3444 577788776 448999998999999999999999987664 4444678899999
Q ss_pred EEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC
Q 010051 151 VAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG 230 (519)
Q Consensus 151 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 230 (519)
+.|+|++..+++++.|+.+.+|+........... ...+...+..+.|.+++
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----------------------------LKGHEGPVSSLSFSPDG 340 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----------------------------ecccCCceEEEEECCCC
Confidence 9999988888889999999999887654211111 11223356778883333
Q ss_pred CeEEEec-CCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC
Q 010051 231 SFLLVPA-GSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN 309 (519)
Q Consensus 231 ~~l~~~~-~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~ 309 (519)
..++.+. .+ +.+.+|+..... ........ ..+..+.+++ . .. .+..+..++
T Consensus 341 ~~~~~~~~~d----------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~-~~--------------~~~~~~~~~ 392 (466)
T COG2319 341 SLLVSGGSDD----------GTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSP-D-GR--------------VVSSGSTDG 392 (466)
T ss_pred CEEEEeecCC----------CcEEeeecCCCc-eeEEecCC-ceEEEEEECC-C-CC--------------EEEEecCCC
Confidence 5555552 22 567778886554 22222222 2278888888 5 32 222467778
Q ss_pred eEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 310 SLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
.+.+|+............ +...+..+.+++++.++++++.++.+++|++..
T Consensus 393 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccCeeeeeccC-CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999999998887777765 327899999999999999999999999999877
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2e-16 Score=150.59 Aligned_cols=289 Identities=17% Similarity=0.206 Sum_probs=198.1
Q ss_pred CEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccce
Q 010051 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWK 94 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~ 94 (519)
+-..+.|+|-...++++.....|+|||.+.++.+..+...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~---------------------------------------- 1105 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG---------------------------------------- 1105 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC----------------------------------------
Confidence 4556778887778887776667888888777654332110
Q ss_pred eeeccccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCC-----CceEEEeccc-------ccCeEEEEEcCCCCeE
Q 010051 95 VLKNLSFHRKDVLDLQWST--DGAFLLSGSVDNSCIIWDVNK-----GSVLQILDAH-------FHYVQGVAWDPLSKYV 160 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~h-------~~~v~~~~~~~~~~~l 160 (519)
......|+.+.+-. |..+|++|+.||.|+||+--. .+.+..+.+- .+.=.-+.|.....+|
T Consensus 1106 -----~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~L 1180 (1387)
T KOG1517|consen 1106 -----AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHL 1180 (1387)
T ss_pred -----CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeE
Confidence 01345577777754 456899999999999997422 2233222211 1111346777777778
Q ss_pred EEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc-cCCCeEEEecCC
Q 010051 161 ASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS-PDGSFLLVPAGS 239 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~~ 239 (519)
+++|.-..|+|||............. ....+++++-+ +.|..+++|..+
T Consensus 1181 l~tGd~r~IRIWDa~~E~~~~diP~~------------------------------s~t~vTaLS~~~~~gn~i~AGfaD 1230 (1387)
T KOG1517|consen 1181 LVTGDVRSIRIWDAHKEQVVADIPYG------------------------------SSTLVTALSADLVHGNIIAAGFAD 1230 (1387)
T ss_pred EecCCeeEEEEEecccceeEeecccC------------------------------CCccceeecccccCCceEEEeecC
Confidence 77777899999999875422111110 12234444433 247888888887
Q ss_pred cceeeeecccceEEEEeccCCCc--ccccCCCCCCC--eEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 240 YKISSMSESINSAYIFSRKDLSR--PALQLPGASKP--VVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
|.+++||.+-... .+.....|+.. |..+.+.+.|. ..+++|+.+|.|++||
T Consensus 1231 ----------GsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~---------------~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1231 ----------GSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL---------------GELVSGSQDGDIQLLD 1285 (1387)
T ss_pred ----------CceEEeecccCCccccceeecccCCcccceeEEeecCCC---------------cceeeeccCCeEEEEe
Confidence 7999999875443 55667778776 99999988763 3589999999999999
Q ss_pred CCCCCceEE--Eeccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCc
Q 010051 316 TESVPPIAI--LAGLH---YAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSED 390 (519)
Q Consensus 316 ~~~~~~~~~--~~~~~---~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (519)
++....... +.. | .+..+++..++....+|+|+. +.|+||++....+.....-++......+.+.+++|+|--
T Consensus 1286 lR~~~~e~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVA-HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccCcccccceeee-ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 997422222 222 2 235999999999999999998 999999998876655444444444456788999999999
Q ss_pred cEEEeecCCceeeec
Q 010051 391 MIIEASTNDKLVTAE 405 (519)
Q Consensus 391 ~~l~~~~~d~~i~~~ 405 (519)
.++|+|..|..|..-
T Consensus 1364 ~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIY 1378 (1387)
T ss_pred HhhhhccCCceEEEe
Confidence 999999999988433
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.6e-16 Score=134.90 Aligned_cols=212 Identities=17% Similarity=0.251 Sum_probs=159.3
Q ss_pred eeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-------ceEEEecccccCeEEEEEcCC-CCeEEEee
Q 010051 94 KVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKG-------SVLQILDAHFHYVQGVAWDPL-SKYVASLS 164 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~ 164 (519)
...-.+.||+++|..++|+| +...||+|+.|.+|.||++..+ +.+..+.+|...|--++|+|. .+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34455678999999999999 5678999999999999998764 346678899999999999996 56789999
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.|.+|.+|++.+++. ++.. .|+..|++++|+-||.++++++.+
T Consensus 152 ~Dn~v~iWnv~tgea-------------------------------li~l-~hpd~i~S~sfn~dGs~l~TtckD----- 194 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA-------------------------------LITL-DHPDMVYSMSFNRDGSLLCTTCKD----- 194 (472)
T ss_pred CCceEEEEeccCCce-------------------------------eeec-CCCCeEEEEEeccCCceeeeeccc-----
Confidence 999999999998762 1222 378889999999999999998887
Q ss_pred eecccceEEEEeccCCCcccccCCCCCC-CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCce-
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASK-PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI- 322 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~- 322 (519)
..|+|||.+... .+..-.+|.+ .-..+.|-.+|..+.+| ++-.++..+-+||..+-+.-
T Consensus 195 -----KkvRv~dpr~~~-~v~e~~~heG~k~~Raifl~~g~i~tTG-------------fsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 195 -----KKVRVIDPRRGT-VVSEGVAHEGAKPARAIFLASGKIFTTG-------------FSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred -----ceeEEEcCCCCc-EeeecccccCCCcceeEEeccCceeeec-------------cccccccceeccCcccccCcc
Confidence 699999997653 3333355654 34456677776432222 11234678999997764332
Q ss_pred --EEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEEecCCc
Q 010051 323 --AILAGLHYAAITDIAWSNNARYLALS-SQDGYCTLVEFENDE 363 (519)
Q Consensus 323 --~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~ 363 (519)
..+. ..+.|.---|.+|..++..+ -.|+.||.|.+.+..
T Consensus 256 ~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 256 ALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3333 35667777889998877655 468999999998764
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=9.2e-18 Score=150.90 Aligned_cols=218 Identities=19% Similarity=0.297 Sum_probs=153.3
Q ss_pred CCCEEEEEEec-CCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 13 TKPVLTLDFHP-ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 13 ~~~V~~~~~sp-~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
...|+.+.|.| |...||+++.||.|+||.+..+......
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~---------------------------------------- 666 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE---------------------------------------- 666 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc----------------------------------------
Confidence 35688999988 4568999999999999988766432211
Q ss_pred cceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCR 170 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~ 170 (519)
......++.|...|+.+.|+| -...|++++.|.+|++||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|+
T Consensus 667 -~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 667 -MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred -CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 023455677999999999999 456899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESIN 250 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 250 (519)
+|+.+........... .....-..+.|--+|+++++.+-+ .....
T Consensus 746 Vy~Prs~e~pv~Eg~g-----------------------------pvgtRgARi~wacdgr~viv~Gfd------k~SeR 790 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKG-----------------------------PVGTRGARILWACDGRIVIVVGFD------KSSER 790 (1012)
T ss_pred EeCCCCCCCccccCCC-----------------------------CccCcceeEEEEecCcEEEEeccc------ccchh
Confidence 9999886532211110 112223368888999999987755 33446
Q ss_pred eEEEEeccCCC-cccccCCCCC-CCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 251 SAYIFSRKDLS-RPALQLPGAS-KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 251 ~i~i~~~~~~~-~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
.+.+|+..... .++.+..-.. -.+.--.|.+|.. -++++|-.|..|++|.+-...+
T Consensus 791 Qv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~---------------~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 791 QVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSN---------------VLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhhhhhhhccCCcceeeeecccCccccccccCCCc---------------eEEEecCCCceEEEEEecCCCc
Confidence 77788775433 1211110000 0011111222321 3577888899999999865544
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.1e-16 Score=150.84 Aligned_cols=225 Identities=18% Similarity=0.151 Sum_probs=148.5
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCC---CcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeE
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGAD---YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGEL 79 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i 79 (519)
|...+....|...|.+.+|||||++||.++.+ ..|++||+.+++.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------------------------------- 240 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------------------------------- 240 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--------------------------------
Confidence 44455566778889999999999999877643 3577888765542
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEe-CCCeE--EEEEcCCCceEEEecccccCeEEEEEcCC
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGS-VDNSC--IIWDVNKGSVLQILDAHFHYVQGVAWDPL 156 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i--~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 156 (519)
+.+..+.+|. ..++|+|||+.|+.++ .+|.+ ++||+.++.. ..+..+...+..+.|+|+
T Consensus 241 --------------~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 241 --------------KVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred --------------EEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCC
Confidence 1122222232 3579999999888764 57755 4557666654 456667677889999999
Q ss_pred CCeEEEee-CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEE
Q 010051 157 SKYVASLS-SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLV 235 (519)
Q Consensus 157 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 235 (519)
|+.|+..+ .+|...+|++....... ... .+.. ....|+|+|+++++
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~----------------------------~~l---~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGA----------------------------SLV---GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCe----------------------------EEe---cCCC--CCccCCCCCCEEEE
Confidence 99877655 57888888875432100 000 0111 24789999999988
Q ss_pred ecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
.+.+ .+.+||+.+....... ... ....+.|+|+| ++++.++.++.+.+|.
T Consensus 350 ~~~~-----------~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG----------------~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 350 INGD-----------NVVKQDLTSGSTEVLS-STF--LDESPSISPNG----------------IMIIYSSTQGLGKVLQ 399 (429)
T ss_pred EcCC-----------CEEEEECCCCCeEEec-CCC--CCCCceECCCC----------------CEEEEEEcCCCceEEE
Confidence 7653 5666887654322111 111 23567899999 4566666666667666
Q ss_pred C--CCCCceEEEeccccccEEEEEEcCC
Q 010051 316 T--ESVPPIAILAGLHYAAITDIAWSNN 341 (519)
Q Consensus 316 ~--~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (519)
+ .++.....+.. |.+.+..++|||-
T Consensus 400 ~~~~~G~~~~~l~~-~~g~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPG-SDGQVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccC-CCCCCCCcccCCC
Confidence 4 35777888877 8888999999985
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.9e-16 Score=139.80 Aligned_cols=298 Identities=11% Similarity=0.069 Sum_probs=201.2
Q ss_pred ecCCCCCEEEEEEecCCCEE-EEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 9 NWHDTKPVLTLDFHPISGLL-ATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
.+.|...-+.|..+|||+|+ |+|..--.|++||+..-.....-........+..-...-..++|...|.+|.+......
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 46788999999999999975 57778889999999876543222111111111111111122222233444433221100
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
...+. -...-..++++.-..-|++++....|+-++++.|..+..+....+.++++..++...+|++|+.+|
T Consensus 127 --------hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 127 --------HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred --------eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence 00000 112234566655444466666677899999999999999988889999999999999999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeec
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~ 247 (519)
.|-+||.+.............. ...........|+++.|+.+|-.+++|+..
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v--------------------~s~pg~~~~~svTal~F~d~gL~~aVGts~-------- 249 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSV--------------------NSHPGGDAAPSVTALKFRDDGLHVAVGTST-------- 249 (703)
T ss_pred eEEEecchhhhhheeeeccccc--------------------CCCccccccCcceEEEecCCceeEEeeccC--------
Confidence 9999999886532221111100 000000112348899999999999999888
Q ss_pred ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 248 SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
|.++|||++.....+..-.+...+|..+.|.+.+.. -.+.......++|||-.+|+....+..
T Consensus 250 --G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q---------------~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 250 --GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ---------------NKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred --CcEEEEEcccCCceeecccCCccceeeecccccCCC---------------ceEEecchHHhhhcccccCCceeeccc
Confidence 799999999876665555666778999999876322 133344446799999999999998885
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 328 LHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
...++.+++-|++-+++++-.++.+..|-+..-
T Consensus 313 --t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 313 --TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred --cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 566999999999999999999888887776543
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=5.1e-16 Score=128.38 Aligned_cols=206 Identities=15% Similarity=0.177 Sum_probs=154.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---eEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCC-C
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS---VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRP-T 177 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 177 (519)
...+|+|.+|++|+..+|.+.....|.||.....+ ..+++..|...|++++|+|..+.|++|+.|..-.+|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35689999999999999999999999999987654 5778899999999999999999999999999999998843 3
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEec
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSR 257 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~ 257 (519)
+.... +-...+....+++.|+|.+..++++++.. .|.++-+
T Consensus 89 ~Wkpt-----------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar----------~isVcy~ 129 (361)
T KOG1523|consen 89 TWKPT-----------------------------LVLLRINRAATCVKWSPKENKFAVGSGAR----------LISVCYY 129 (361)
T ss_pred eeccc-----------------------------eeEEEeccceeeEeecCcCceEEeccCcc----------EEEEEEE
Confidence 21111 11123456788999999999999998873 4444443
Q ss_pred cCCC---cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC-----C------------
Q 010051 258 KDLS---RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT-----E------------ 317 (519)
Q Consensus 258 ~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~-----~------------ 317 (519)
.... -....-..+...|+++.|+|++-.| ++|+.|+..+||.. +
T Consensus 130 E~ENdWWVsKhikkPirStv~sldWhpnnVLl----------------aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~ 193 (361)
T KOG1523|consen 130 EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL----------------AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKM 193 (361)
T ss_pred ecccceehhhhhCCccccceeeeeccCCccee----------------cccccCcceeEEEEeeeccccCCCCCCCccCC
Confidence 3211 2223344567889999999998554 44555556666642 1
Q ss_pred -CCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 318 -SVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 318 -~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
-|+++..+.. ..+.|..+.|+|+|..|+-.+.|+++.+-|.....
T Consensus 194 PFG~lm~E~~~-~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 194 PFGQLMSEASS-SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cHHHHHHhhcc-CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1233444433 56889999999999999999999999999877653
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2e-16 Score=140.56 Aligned_cols=266 Identities=15% Similarity=0.107 Sum_probs=183.6
Q ss_pred ceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------CceEEEecccccCeEEEEEcCCCCeEEEee
Q 010051 93 WKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK--------GSVLQILDAHFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 164 (519)
|....++..|...|+.++|.+....|++++.||.|.+|++.. -+.+.+|.+|.++|.|+++.++++.+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 455557778999999999999999999999999999999932 245778999999999999999999999999
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.||+|+.|++.... ..... .......-....|...+..+++|+....|++++.+
T Consensus 364 ~Dg~I~~w~~p~n~-dp~ds--------------------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D----- 417 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQ-DPDDS--------------------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD----- 417 (577)
T ss_pred cCceeeeeccCCCC-Ccccc--------------------cCcchhccceeccccceeeeeecccccceeeecCC-----
Confidence 99999999886322 11100 00011111223567888899999999999998888
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
+++++|+......+........+.-..+.|-.....+ .++...-+.--++++.....+..
T Consensus 418 -----gTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~---------------~~~s~~~~~~~~~~~ev~s~~~~ 477 (577)
T KOG0642|consen 418 -----GTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAH---------------SLASFRFGYTSIDDMEVVSDLLI 477 (577)
T ss_pred -----ceEEeeccCCcCccccCCccccCCcceEeeccchhHh---------------hhhhcccccccchhhhhhhheee
Confidence 7999999865544222222222333444443322111 11111112233344444444443
Q ss_pred Eecc------ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecC
Q 010051 325 LAGL------HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTN 398 (519)
Q Consensus 325 ~~~~------~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 398 (519)
+... ....++.+.++|.+.+.+++..|+.|+++|..++++...... +...++++++.|+|.+|++++.
T Consensus 478 ~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a------~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 478 FESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA------HKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred ccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee------ccceecceeecCCCceEEeecC
Confidence 3320 123577889999999999999999999999988865543332 3468899999999999999999
Q ss_pred Ccee-eecCCCCC
Q 010051 399 DKLV-TAETKEPD 410 (519)
Q Consensus 399 d~~i-~~~~~~~~ 410 (519)
|+.+ .|....+.
T Consensus 552 d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 552 DGSVRLWKLDVKT 564 (577)
T ss_pred Cceeehhhccchh
Confidence 9888 44443433
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=7.1e-17 Score=138.51 Aligned_cols=187 Identities=24% Similarity=0.254 Sum_probs=137.0
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccceee
Q 010051 17 LTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVL 96 (519)
Q Consensus 17 ~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~ 96 (519)
.+++|+.+|..|++|+.||++|||++.+...+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~------------------------------------------------ 179 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI------------------------------------------------ 179 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh------------------------------------------------
Confidence 78999999999999999999999997654422
Q ss_pred eccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc--cccCeEEEEEcCCC---Ce--EEEeeCCCeE
Q 010051 97 KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA--HFHYVQGVAWDPLS---KY--VASLSSDRTC 169 (519)
Q Consensus 97 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~---~~--l~~~~~dg~i 169 (519)
.....|...|.++.|+|||++|++-+.| ..+||++++|..++.... .......+.|+.++ .+ ++....-+.|
T Consensus 180 l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v 258 (398)
T KOG0771|consen 180 LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGV 258 (398)
T ss_pred hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCce
Confidence 2223488899999999999999999999 899999999977665542 22345667787666 22 2333345667
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
+.|++........... .........|.+++.+++|++++.++.+
T Consensus 259 ~~~~~~~w~~~~~l~~--------------------------~~~~~~~~siSsl~VS~dGkf~AlGT~d---------- 302 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRL--------------------------RKKIKRFKSISSLAVSDDGKFLALGTMD---------- 302 (398)
T ss_pred eEEEeeeeccccccch--------------------------hhhhhccCcceeEEEcCCCcEEEEeccC----------
Confidence 7777654332100000 0000112358899999999999999887
Q ss_pred ceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccc
Q 010051 250 NSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRE 288 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 288 (519)
+.|-+|+....+........|...|+.+.|+|+.++++.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 689999988777666777789999999999999866554
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1e-15 Score=121.56 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=155.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------C-ceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEec
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNK---------G-SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 174 (519)
.|..-+|+|.+++|++|+.+|+|.+..+.+ + ..+...++|.++|..++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 456678999999999999999999999864 2 2344558999999999998 45677776 599999988
Q ss_pred CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEE
Q 010051 175 RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254 (519)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i 254 (519)
+........+..+.. ........-.--.|+++...|....++.++++ +.++-
T Consensus 89 ~E~~es~~~K~lwe~------------------~~P~~~~~~evPeINam~ldP~enSi~~AgGD----------~~~y~ 140 (325)
T KOG0649|consen 89 NEEEESLATKRLWEV------------------KIPMQVDAVEVPEINAMWLDPSENSILFAGGD----------GVIYQ 140 (325)
T ss_pred hhhhhhccchhhhhh------------------cCccccCcccCCccceeEeccCCCcEEEecCC----------eEEEE
Confidence 764321110000000 00000000011347789999988777777777 68999
Q ss_pred EeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc------
Q 010051 255 FSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL------ 328 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~------ 328 (519)
||+.+ ++....+.+|...+.++.--... ..+++|+.||++++||.++++.+..+...
T Consensus 141 ~dlE~-G~i~r~~rGHtDYvH~vv~R~~~----------------~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 141 VDLED-GRIQREYRGHTDYVHSVVGRNAN----------------GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred EEecC-CEEEEEEcCCcceeeeeeecccC----------------cceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 99975 46677899999999998873322 35899999999999999999988877541
Q ss_pred --c-cccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCc
Q 010051 329 --H-YAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNK 374 (519)
Q Consensus 329 --~-~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 374 (519)
| ...|-+++- +..+|++|+ ...+.+|.+...+....++++++.
T Consensus 204 Rp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v 249 (325)
T KOG0649|consen 204 RPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARV 249 (325)
T ss_pred CcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccce
Confidence 1 233555554 455888765 578999999999888888876654
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.2e-14 Score=122.77 Aligned_cols=244 Identities=16% Similarity=0.186 Sum_probs=173.9
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCccc
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQA 92 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~ 92 (519)
...+..+.|+.+...|..|+.|| .++|..+...... |
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-------------~----------------------------- 41 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-------------S----------------------------- 41 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-------------c-----------------------------
Confidence 45677788999999999999998 6777765433100 0
Q ss_pred ceeeeccccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEE
Q 010051 93 WKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD--NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCR 170 (519)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~ 170 (519)
.......|..+-|+ ..++|..+.+ +.++++++..+..+..+.- ...|.++.++. +.|+++-.+. |.
T Consensus 42 ------~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Lee~-Iy 109 (391)
T KOG2110|consen 42 ------KDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLEES-IY 109 (391)
T ss_pred ------ccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEccc-EE
Confidence 00012234555565 3455555543 4589999988877766653 46788999874 5666666554 99
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESIN 250 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 250 (519)
|||++..+........ ...+..+..+++++.+.+++.-+.. ..+
T Consensus 110 IydI~~MklLhTI~t~----------------------------~~n~~gl~AlS~n~~n~ylAyp~s~--------t~G 153 (391)
T KOG2110|consen 110 IYDIKDMKLLHTIETT----------------------------PPNPKGLCALSPNNANCYLAYPGST--------TSG 153 (391)
T ss_pred EEecccceeehhhhcc----------------------------CCCccceEeeccCCCCceEEecCCC--------CCc
Confidence 9999987643322211 1223345566666677788876533 348
Q ss_pred eEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc-c
Q 010051 251 SAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL-H 329 (519)
Q Consensus 251 ~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~ 329 (519)
.|.+||..+. .++..+..|.+++.+++|+++|..||+++..|. .||||.+.+|+.+..|+.+ .
T Consensus 154 dV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGT---------------VIRVf~v~~G~kl~eFRRG~~ 217 (391)
T KOG2110|consen 154 DVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGT---------------VIRVFSVPEGQKLYEFRRGTY 217 (391)
T ss_pred eEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCce---------------EEEEEEcCCccEeeeeeCCce
Confidence 9999999764 566777899999999999999977766666663 4899999999999998752 2
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 330 YAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 330 ~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
...|.+++|+|++++|++.+..++|.||.++...
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 3568899999999999999999999999997653
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.8e-15 Score=138.85 Aligned_cols=240 Identities=14% Similarity=0.073 Sum_probs=150.3
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV---DNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
..|.+||..... ...+..+...+...+|||||+.|+..+. +..|++|++.+++... +....+.+..+.|
T Consensus 179 ~~l~~~d~dg~~-------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~ 250 (429)
T PRK03629 179 YELRVSDYDGYN-------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF 250 (429)
T ss_pred eeEEEEcCCCCC-------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence 368888876441 2333446678999999999999887643 4579999998886433 2223334557899
Q ss_pred cCCCCeEEEe-eCCC--eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC
Q 010051 154 DPLSKYVASL-SSDR--TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG 230 (519)
Q Consensus 154 ~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 230 (519)
+|||+.|+.. +.+| .|.+||+.+++..... .....+....|+|||
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------~~~~~~~~~~wSPDG 298 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------DGRSNNTEPTWFPDS 298 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc--------------------------------CCCCCcCceEECCCC
Confidence 9999988765 4455 4888898775421110 111234578999999
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCe
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNS 310 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~ 310 (519)
+.|+.++.... ...++++++.... ...+...........|+|||+.++....++ ....
T Consensus 299 ~~I~f~s~~~g-------~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-------------g~~~ 356 (429)
T PRK03629 299 QNLAYTSDQAG-------RPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNG-------------GQQH 356 (429)
T ss_pred CEEEEEeCCCC-------CceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccC-------------CCce
Confidence 99988765421 1356666765432 223333334456789999996653222111 1246
Q ss_pred EEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCc---EEEEEecCCcccceeeecCCcccccCCCCccccc
Q 010051 311 LYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGY---CTLVEFENDELGIPISLSGNKVSKDENKSPLVTK 387 (519)
Q Consensus 311 i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 387 (519)
|++||+.++... .+.. ........|+|||++|+.++.++. +.+++++.. ....+.++ .+.+...+|+
T Consensus 357 I~~~dl~~g~~~-~Lt~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~---~~~~l~~~----~~~~~~p~Ws 426 (429)
T PRK03629 357 IAKQDLATGGVQ-VLTD--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR---FKARLPAT----DGQVKFPAWS 426 (429)
T ss_pred EEEEECCCCCeE-EeCC--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC---CeEECccC----CCCcCCcccC
Confidence 889999888644 3333 123456889999999999988865 566666443 22333332 2456667777
Q ss_pred C
Q 010051 388 S 388 (519)
Q Consensus 388 ~ 388 (519)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 6
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=8.4e-15 Score=137.75 Aligned_cols=229 Identities=16% Similarity=0.105 Sum_probs=143.3
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcC---CCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeE
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGA---DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGEL 79 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i 79 (519)
|...+....+...+.+.+|||||+.||..+. +..|++|++.+++.
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-------------------------------- 235 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-------------------------------- 235 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------------------------
Confidence 3334444556678899999999998886542 23566666655432
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCceEEEecccccCeEEEEEcCC
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSG-SVDN--SCIIWDVNKGSVLQILDAHFHYVQGVAWDPL 156 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 156 (519)
+.+..+.++ +..++|+|||+.|+.. +.+| .|++||+.+++..+ +..+...+....|+|+
T Consensus 236 --------------~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD 297 (429)
T PRK03629 236 --------------RQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD 297 (429)
T ss_pred --------------EEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC
Confidence 111222222 3457899999988765 3344 59999998887654 4444456788999999
Q ss_pred CCeEEEeeCC-CeEEEE--ecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeE
Q 010051 157 SKYVASLSSD-RTCRIY--ANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFL 233 (519)
Q Consensus 157 ~~~l~~~~~d-g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 233 (519)
|+.|+..+.+ +...+| |+.++..... . ..........|+|||+++
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~~l------------------------------t--~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQRI------------------------------T--WEGSQNQDADVSSDGKFM 345 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeEEe------------------------------e--cCCCCccCEEECCCCCEE
Confidence 9988777654 444555 5544321100 0 011223468899999999
Q ss_pred EEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC---e
Q 010051 234 LVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN---S 310 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~---~ 310 (519)
+..+.... ...+++||+..... ..+... .......|+|||+.+ +..+.++ .
T Consensus 346 a~~~~~~g-------~~~I~~~dl~~g~~--~~Lt~~-~~~~~p~~SpDG~~i----------------~~~s~~~~~~~ 399 (429)
T PRK03629 346 VMVSSNGG-------QQHIAKQDLATGGV--QVLTDT-FLDETPSIAPNGTMV----------------IYSSSQGMGSV 399 (429)
T ss_pred EEEEccCC-------CceEEEEECCCCCe--EEeCCC-CCCCCceECCCCCEE----------------EEEEcCCCceE
Confidence 88764421 24688888865432 222221 223467899999654 3333332 4
Q ss_pred EEEEeCCCCCceEEEeccccccEEEEEEcCC
Q 010051 311 LYIYDTESVPPIAILAGLHYAAITDIAWSNN 341 (519)
Q Consensus 311 i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (519)
++++++. +.....+.. |.+.+...+|+|-
T Consensus 400 l~~~~~~-G~~~~~l~~-~~~~~~~p~Wsp~ 428 (429)
T PRK03629 400 LNLVSTD-GRFKARLPA-TDGQVKFPAWSPY 428 (429)
T ss_pred EEEEECC-CCCeEECcc-CCCCcCCcccCCC
Confidence 7788874 666677777 8888999999973
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=4.1e-15 Score=121.35 Aligned_cols=229 Identities=21% Similarity=0.331 Sum_probs=155.5
Q ss_pred cCCCCCEEEEEEecCCC-----EEEEEcCCCcEEEEEecCCcccccc----------ccccccccccccCcceeEEEEcc
Q 010051 10 WHDTKPVLTLDFHPISG-----LLATGGADYDIKIWLINSGEKQKKI----------PTASYQNSLSYHGSAINILRFSP 74 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~-----~la~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~ 74 (519)
+.|.-+++.+.|.|+.. +||+++ ..+|+|.+...+..... ....++..+.+..-..+-+..++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 67889999999999873 677654 46999998743221111 01112223333333444455555
Q ss_pred CCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceEEEe---cccccCeEE
Q 010051 75 CGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSVLQIL---DAHFHYVQG 150 (519)
Q Consensus 75 ~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~ 150 (519)
-|.+..|||+.++..+ .....+-.|...|..++|...+ +.+|+.+.||.|++||++.-+.-..+ .....+...
T Consensus 171 iDTTCTiWdie~~~~~---~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG---TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR 247 (364)
T ss_pred ccCeEEEEEEeecccc---ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence 5788999999986322 3455677899999999999865 57889999999999999876543333 222467888
Q ss_pred EEEcC-CCCeEEEeeCC-CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 151 VAWDP-LSKYVASLSSD-RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 151 ~~~~~-~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
++|++ |-+++++-..| ..|.+.|++... ..+.....|.+.|+.++|.|
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~------------------------------tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPC------------------------------TPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCC------------------------------cceehhhcCcccccceEecC
Confidence 99986 45677776555 568999998753 22344557889999999999
Q ss_pred CCCeEEEecCCcceeeeecccceEEEEeccCCCc-----ccccCCCCCCCeEEEEEcCCc
Q 010051 229 DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR-----PALQLPGASKPVVAVRFCPLA 283 (519)
Q Consensus 229 ~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~ 283 (519)
....-++++++. ..+.+||+..... ++..+. ..+.|+.+.|++..
T Consensus 298 hS~~hictaGDD---------~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 298 HSSSHICTAGDD---------CQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred CCCceeeecCCc---------ceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC
Confidence 765555544443 5888999975543 222333 45789999999743
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.4e-14 Score=135.43 Aligned_cols=220 Identities=13% Similarity=0.121 Sum_probs=141.0
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
..|.+||.... ....+..+...+.+++|+|||+.|+..+.+ ..|++||+.+++... +..+.+....+.|
T Consensus 184 ~~l~i~D~~g~-------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~ 255 (433)
T PRK04922 184 YALQVADSDGY-------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSF 255 (433)
T ss_pred EEEEEECCCCC-------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceE
Confidence 36888887543 233455577789999999999999987743 479999998876543 3334445567899
Q ss_pred cCCCCeEE-EeeCCC--eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC
Q 010051 154 DPLSKYVA-SLSSDR--TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG 230 (519)
Q Consensus 154 ~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 230 (519)
+|+|+.|+ +.+.+| .|.+||+.+++..... .+......++|+|||
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt--------------------------------~~~~~~~~~~~spDG 303 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT--------------------------------NHFGIDTEPTWAPDG 303 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeEECc--------------------------------cCCCCccceEECCCC
Confidence 99999775 445555 5888998776421110 111223468999999
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCe
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNS 310 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~ 310 (519)
++|++++.... ...++++++..... ..+..+......++|+|+|+.++....++ ....
T Consensus 304 ~~l~f~sd~~g-------~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~-------------~~~~ 361 (433)
T PRK04922 304 KSIYFTSDRGG-------RPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKKIAMVHGSG-------------GQYR 361 (433)
T ss_pred CEEEEEECCCC-------CceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEEEEEECCC-------------Ccee
Confidence 99988764321 13577777654332 22222223345689999996653221110 1136
Q ss_pred EEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEecC
Q 010051 311 LYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD---GYCTLVEFEN 361 (519)
Q Consensus 311 i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vwd~~~ 361 (519)
|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++..
T Consensus 362 I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 362 IAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 999999887755 333 22345578999999988876654 3467777754
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=9.6e-15 Score=121.36 Aligned_cols=295 Identities=18% Similarity=0.298 Sum_probs=186.9
Q ss_pred CCCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC--
Q 010051 12 DTKPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE-- 88 (519)
Q Consensus 12 h~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~-- 88 (519)
....+.+++|||||+ +|.+...+-.|.||.+.+.+... +..-...+..++|.+++....|-.-+.-.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----------~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----------LPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----------ecccccCceeEEECCCCceeeeeecccHHHH
Confidence 457899999999996 55567779999999998876543 22234556889999999877775543221
Q ss_pred ----CcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEee
Q 010051 89 ----TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 89 ----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 164 (519)
.-+.|..++.+.-.+-..+.+.|+|||..|+ |||---.-.+..+. ..-.+..+.|+|.+++|+.|+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeec
Confidence 1234556666766777889999999998776 45522111111221 124688899999999999999
Q ss_pred CCCeEEEEecCCCCcccc----c------------------cccceeeEEEeccCcccccC-Cc---------cccceee
Q 010051 165 SDRTCRIYANRPTKSKGV----E------------------KMNYVCQHVITKAGQHSTDD-SK---------SAKNHLF 212 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~----~------------------~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~ 212 (519)
.|+.+|+.+--+-+.... . .+...|.. +.+.+...... .. ....+..
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs-f~p~~~~a~~~~~se~~YE~~~~pv~~~~l 308 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS-FTPTDLEAHIWEESETIYEQQMTPVKVHKL 308 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc-cCCCccccCccccchhhhhhhhcceeeecc
Confidence 999999865443221110 0 00001110 00000000000 00 0000000
Q ss_pred ----ecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccc
Q 010051 213 ----HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRE 288 (519)
Q Consensus 213 ----~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 288 (519)
........+..++|++|..++++-... ..+.+++||++... +...-....+|....|+|...
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~--------~PnalW~Wdlq~l~--l~avLiQk~piraf~WdP~~p---- 374 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRNDK--------YPNALWLWDLQNLK--LHAVLIQKHPIRAFEWDPGRP---- 374 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecCC--------CCceEEEEechhhh--hhhhhhhccceeEEEeCCCCc----
Confidence 011112346679999999999986543 44789999997543 333334567899999999873
Q ss_pred cCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010051 289 SNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCT 355 (519)
Q Consensus 289 ~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~ 355 (519)
.++.+.+..++++|.......+..-. ..-.|..+.|.-+|..++..+.|....
T Consensus 375 ------------rL~vctg~srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 375 ------------RLVVCTGKSRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred ------------eEEEEcCCceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCceEE
Confidence 45555666689999987654444433 357899999999999999999986533
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.3e-14 Score=134.70 Aligned_cols=220 Identities=14% Similarity=0.142 Sum_probs=144.3
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV---DNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
.|.++|.... ....+..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+
T Consensus 183 ~l~~~d~dg~-------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S 254 (435)
T PRK05137 183 RLAIMDQDGA-------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS 254 (435)
T ss_pred EEEEECCCCC-------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC
Confidence 6778887543 33445567889999999999999888764 468999999888653 455566677889999
Q ss_pred CCCCeEE-EeeCCCe--EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 155 PLSKYVA-SLSSDRT--CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 155 ~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
|+|+.|+ +.+.++. |.+||+.++...... ..........|+|||+
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt--------------------------------~~~~~~~~~~~spDG~ 302 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT--------------------------------DSPAIDTSPSYSPDGS 302 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceEEcc--------------------------------CCCCccCceeEcCCCC
Confidence 9999875 5555655 666787765421110 1122344689999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSL 311 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i 311 (519)
+|+..+... ....+++++..... ...+..+...+....|+|+|+.++....+ .....|
T Consensus 303 ~i~f~s~~~-------g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~-------------~~~~~i 360 (435)
T PRK05137 303 QIVFESDRS-------GSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQG-------------GGQFSI 360 (435)
T ss_pred EEEEEECCC-------CCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcC-------------CCceEE
Confidence 998876432 12468888875432 22333334456678899999665432211 112378
Q ss_pred EEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC------CcEEEEEecCC
Q 010051 312 YIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD------GYCTLVEFEND 362 (519)
Q Consensus 312 ~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d------g~i~vwd~~~~ 362 (519)
.+||+.++.. ..+.. ...+..+.|+|||++|+..+.+ ..+.++++..+
T Consensus 361 ~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 361 GVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 8899865543 33332 2356788999999998776543 24677777654
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.9e-14 Score=134.34 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=133.2
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
..|.++|.... ....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|
T Consensus 176 ~~L~~~D~dG~-------~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~ 247 (427)
T PRK02889 176 YQLQISDADGQ-------NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAW 247 (427)
T ss_pred cEEEEECCCCC-------CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 35666666322 223344577789999999999999887643 469999999887543 3333455678999
Q ss_pred cCCCCeEE-EeeCCCeEEEEecC--CCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC
Q 010051 154 DPLSKYVA-SLSSDRTCRIYANR--PTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG 230 (519)
Q Consensus 154 ~~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 230 (519)
+|||+.|+ +.+.+|...+|.+. .+.... ...+........|+|||
T Consensus 248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~--------------------------------lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 248 SPDGRTLAVALSRDGNSQIYTVNADGSGLRR--------------------------------LTQSSGIDTEPFFSPDG 295 (427)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCcEE--------------------------------CCCCCCCCcCeEEcCCC
Confidence 99999886 46778877777553 222100 00111223467899999
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCe
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNS 310 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~ 310 (519)
++|+..+... ....+++++..........+. ........|+|+|++++.....+ ....
T Consensus 296 ~~l~f~s~~~-------g~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~-------------g~~~ 353 (427)
T PRK02889 296 RSIYFTSDRG-------GAPQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVG-------------GAFK 353 (427)
T ss_pred CEEEEEecCC-------CCcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccC-------------CcEE
Confidence 9998765432 012455555443222222222 22344678999996553222111 1126
Q ss_pred EEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCC-c--EEEEEe
Q 010051 311 LYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDG-Y--CTLVEF 359 (519)
Q Consensus 311 i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~--i~vwd~ 359 (519)
|++||+.+++...... ........|+|||++|+.++.++ . +.+.++
T Consensus 354 I~v~d~~~g~~~~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 354 LYVQDLATGQVTALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEECCCCCeEEccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 9999998887543332 23346789999999988877654 3 444444
No 213
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=7.8e-14 Score=124.43 Aligned_cols=311 Identities=14% Similarity=0.163 Sum_probs=195.9
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCe--------------
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGE-------------- 78 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------- 78 (519)
..+++..++|++|+++|.+. +..++|++..++..+.+. ....++++.|+|-+..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~-----------~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~ 101 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV-----------ELKKTYDLLFSPKGNYLLTWEPWAIYGPKN 101 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe-----------ccceeeeeeecccccccccccccccccCCC
Confidence 45578899999999999876 567999999888633221 2236788888887533
Q ss_pred -----EEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 79 -----LIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 79 -----i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
+.+|++.++ .....+......-+++.|+.|..+.+ --..+.+.+|++.+.+.+. -.-|...|+.+.+
T Consensus 102 ~~~pn~~v~~vet~------~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~l 173 (566)
T KOG2315|consen 102 ASNPNVLVYNVETG------VQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSL 173 (566)
T ss_pred CCCCceeeeeeccc------eehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEe
Confidence 456665553 12222222222226889998876433 2235779999987744322 2335678999999
Q ss_pred cCCCC--eEEE-----eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEE
Q 010051 154 DPLSK--YVAS-----LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAW 226 (519)
Q Consensus 154 ~~~~~--~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (519)
+|.+. .+++ .|.-+.++||............. ..+ +...-..+.|
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~-----ksF-----------------------Fkadkvqm~W 225 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN-----KSF-----------------------FKADKVQMKW 225 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh-----ccc-----------------------cccceeEEEe
Confidence 98633 3332 34556799998763221110000 000 0011126888
Q ss_pred ccCCCeEEEecCC--cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEE
Q 010051 227 SPDGSFLLVPAGS--YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA 304 (519)
Q Consensus 227 sp~g~~l~~~~~~--~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~ 304 (519)
++-|.-|++-... ++....-.....++++++. +......+ ...++|.++.|+|++..++ ++.
T Consensus 226 N~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~EF~--------------Vvy 289 (566)
T KOG2315|consen 226 NKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGREFA--------------VVY 289 (566)
T ss_pred ccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCEEE--------------EEE
Confidence 8887765543321 1000001122567888876 22222223 3478999999999996643 444
Q ss_pred EecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEecCCcccceeeecCCcccccCCC
Q 010051 305 IATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD---GYCTLVEFENDELGIPISLSGNKVSKDENK 381 (519)
Q Consensus 305 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 381 (519)
|-.-..+.|||++ +.++..+. .++=+++-|+|.|++|+.++.+ |.+-|||+.+.+....... ...
T Consensus 290 GfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--------~~t 357 (566)
T KOG2315|consen 290 GFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--------ANT 357 (566)
T ss_pred ecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc--------CCc
Confidence 5556789999987 66666664 4778899999999999998876 8899999998654433322 344
Q ss_pred CcccccCCccEEEeecCC
Q 010051 382 SPLVTKSEDMIIEASTND 399 (519)
Q Consensus 382 ~~~~~s~~~~~l~~~~~d 399 (519)
+-+.|+|||.+++++..-
T Consensus 358 t~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTA 375 (566)
T ss_pred eEEEEcCCCcEEEEEecc
Confidence 568999999999988754
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=2.8e-14 Score=138.38 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=181.6
Q ss_pred CCCCeeEEecCCCCCEEEEEEecCC-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeE
Q 010051 1 MKGGTLQINWHDTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGEL 79 (519)
Q Consensus 1 ~~~~~~~~~~~h~~~V~~~~~sp~~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i 79 (519)
++|..+..+..|+..|..++.++.. .++++|+.||+|+||+...-.. +.+.-
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~---------------~~~s~------------ 1088 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG---------------EGGSA------------ 1088 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc---------------Cccee------------
Confidence 3567778888999999999998765 8999999999999999864321 21110
Q ss_pred EEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--c-----eEEEecccc-cCeEE-
Q 010051 80 IIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG--S-----VLQILDAHF-HYVQG- 150 (519)
Q Consensus 80 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~-----~~~~~~~h~-~~v~~- 150 (519)
+...++......+.++.+.+.+..+|.++.||.|.+.+++.. . ..+....+. +.+.+
T Consensus 1089 --------------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m 1154 (1431)
T KOG1240|consen 1089 --------------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM 1154 (1431)
T ss_pred --------------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe
Confidence 111111113567888899999999999999999999998762 1 112222222 23333
Q ss_pred EEEcC-CC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 151 VAWDP-LS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 151 ~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
-+|.. .+ ..++.+..-+.|..||++.......... ....+.|++++.+|
T Consensus 1155 ~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-----------------------------~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1155 HAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-----------------------------QLRHGLVTSIVIDP 1205 (1431)
T ss_pred ecccccccceeEEEEEeccceEEecchhhhhHHhhhc-----------------------------CccccceeEEEecC
Confidence 33332 22 3678888889999999987643222222 22346789999999
Q ss_pred CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe-c
Q 010051 229 DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA-T 307 (519)
Q Consensus 229 ~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~-~ 307 (519)
.+.+++.|+.. |.+.+||++-.......-.++..+++.+..+|-...- . -.+.++. .
T Consensus 1206 ~~~WlviGts~----------G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~------S------~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1206 WCNWLVIGTSR----------GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE------S------VSVSAGSSS 1263 (1431)
T ss_pred CceEEEEecCC----------ceEEEEEeecCceeecccCcccCCcceEEeeccCCCC------c------eEEEecccC
Confidence 99999999887 6899999974433333334556788888888754310 0 1234444 5
Q ss_pred CCeEEEEeCCCCCceEEEecccc------------------ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc
Q 010051 308 LNSLYIYDTESVPPIAILAGLHY------------------AAITDIAWSNNARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~------------------~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
.+.|.+|++.+|.+..++..... -......+..-+.++.+|+.|+.|+.||....+.
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 68899999999877776654201 1112233333456899999999999999877643
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=8.1e-15 Score=124.67 Aligned_cols=217 Identities=16% Similarity=0.188 Sum_probs=162.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eEEEecccccCeEEEEEcCCCCe-EEEeeCC--CeEEEEe
Q 010051 101 FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS----VLQILDAHFHYVQGVAWDPLSKY-VASLSSD--RTCRIYA 173 (519)
Q Consensus 101 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~d--g~i~iwd 173 (519)
.....|..++.. ...|++|-.+|.+.+|....+. .+..+..+ ..+..+.-++...+ +++|+.. ..+.+||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 345566666654 3468888889999999988443 33344444 55667777765555 4568888 8899999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC--CCeEEEecCCcceeeeecccce
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD--GSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
+...+....... .+ .... ....+-+++.+.|-+. ...+++++.. +.
T Consensus 180 le~~~qiw~aKN--vp------------nD~L--------~LrVPvW~tdi~Fl~g~~~~~fat~T~~----------hq 227 (412)
T KOG3881|consen 180 LEQSKQIWSAKN--VP------------NDRL--------GLRVPVWITDIRFLEGSPNYKFATITRY----------HQ 227 (412)
T ss_pred cccceeeeeccC--CC------------Cccc--------cceeeeeeccceecCCCCCceEEEEecc----------ee
Confidence 987632111000 00 0000 0123456778899887 7888887776 69
Q ss_pred EEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE-Eecccc
Q 010051 252 AYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI-LAGLHY 330 (519)
Q Consensus 252 i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-~~~~~~ 330 (519)
+++||.+...+|+..+.-.+.+++++...|.+ ++++++...+.+..||++.++.... +.+ ..
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g----------------n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg-~t 290 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSG----------------NFIYTGNTKGQLAKFDLRGGKLLGCGLKG-IT 290 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecCCC----------------cEEEEecccchhheecccCceeeccccCC-cc
Confidence 99999998889999998889999999999998 6688888888999999999998877 666 88
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceee
Q 010051 331 AAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPIS 369 (519)
Q Consensus 331 ~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~ 369 (519)
+.|+++..+|.+++|++++-|..|||+|+.+.++.....
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 999999999999999999999999999999876554433
No 216
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=2.4e-15 Score=120.97 Aligned_cols=278 Identities=10% Similarity=0.095 Sum_probs=177.8
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEec-ccccCeEEEEEcCCCCeEEEeeCCCeEEEEe
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILD-AHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 173 (519)
....+.+|.+.++++.|-.+++ |++|..-|.|.+|++.+...+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3455668999999999987765 8999999999999999988887787 56778999988886 6788999999999999
Q ss_pred cCCCCcccccccc----ceeeEEEeccCccc----ccC------------Cccccceeeec--CCCcceeeEEEEcc-CC
Q 010051 174 NRPTKSKGVEKMN----YVCQHVITKAGQHS----TDD------------SKSAKNHLFHD--ETLPSFFRRLAWSP-DG 230 (519)
Q Consensus 174 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~------------~~~~~~~~~~~--~~~~~~i~~~~~sp-~g 230 (519)
+.......+.... ..|...+....... ... .......+... ....+.+.+..+.- ++
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 9875432221110 01111111111110 000 00000011111 11223444544322 34
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCC---------cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLS---------RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~---------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
.+++... +...+.+.+||+.... +.......|..+|.++.|.+.-..
T Consensus 164 s~~llla--------GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r---------------- 219 (323)
T KOG0322|consen 164 STFLLLA--------GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR---------------- 219 (323)
T ss_pred ceEEEEE--------eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC----------------
Confidence 4433322 2234788999987642 222334568889999999864322
Q ss_pred EEEEecCCeEEEEeCCCC--Cc--eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccc
Q 010051 302 IFAIATLNSLYIYDTESV--PP--IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSK 377 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~--~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 377 (519)
=++|+.+..+..|++... .+ ...+.. ..-.|..+..-||++.||+++.|+.||||...+......+ .. +
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL--ky----H 292 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL--KY----H 292 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh--hh----h
Confidence 244555557888877643 21 112222 2346888999999999999999999999999876433222 22 3
Q ss_pred cCCCCcccccCCccEEEeecCCcee-eec
Q 010051 378 DENKSPLVTKSEDMIIEASTNDKLV-TAE 405 (519)
Q Consensus 378 ~~~~~~~~~s~~~~~l~~~~~d~~i-~~~ 405 (519)
...+.+++|+|+..++|+++.|..| .|+
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeee
Confidence 4789999999999999999999988 553
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=4.8e-13 Score=111.02 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=127.7
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC-CccccccccceeeEEEeccCcccccC
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT-KSKGVEKMNYVCQHVITKAGQHSTDD 203 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
..|.|||=....++..+. ...+|.++.+.++ .|++. ..+.|.+|..... +...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~---------------------- 128 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLH---------------------- 128 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhhee----------------------
Confidence 579999966677777665 4578999999864 44444 3678999988743 2110
Q ss_pred CccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc-ccccCCCCCCCeEEEEEcCC
Q 010051 204 SKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR-PALQLPGASKPVVAVRFCPL 282 (519)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~v~~~~~sp~ 282 (519)
.+....-+....+++-+.+...|+..+. ..|.++|.|+..... +...+..|...|.|++.+-+
T Consensus 129 -------~~et~~NPkGlC~~~~~~~k~~LafPg~---------k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 129 -------VIETRSNPKGLCSLCPTSNKSLLAFPGF---------KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ 192 (346)
T ss_pred -------eeecccCCCceEeecCCCCceEEEcCCC---------ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC
Confidence 0111111122223332223334443332 237999999876544 45678899999999999999
Q ss_pred cccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 283 AFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL-HYAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 283 ~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
|..+|+++..|. -|||||..+|..+..++.+ ....|.+|+|||++.+||++|.-|+|.||.+..
T Consensus 193 Gt~vATaStkGT---------------LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 193 GTLVATASTKGT---------------LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEeccCcE---------------EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 966666555553 4899999999999988752 346799999999999999999999999999987
Q ss_pred Ccc
Q 010051 362 DEL 364 (519)
Q Consensus 362 ~~~ 364 (519)
...
T Consensus 258 ~~~ 260 (346)
T KOG2111|consen 258 TEN 260 (346)
T ss_pred CCC
Confidence 543
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=131.12 Aligned_cols=258 Identities=12% Similarity=0.116 Sum_probs=195.7
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------CCeEEEEEcccC
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------GGELIIWKLHTT 87 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~i~vw~~~~~ 87 (519)
-..+.|+.+|++|+.|+.-|.|-.+|+.+++....+.. ...|..+.|.-+ ...++|||-...
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----------~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----------METVRDVTFLHNEQFFAVAQKKYVYVYDNNGT 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----------hhhhhhhhhhcchHHHHhhhhceEEEecCCCc
Confidence 46788999999999999999999999999988776643 344555555443 477888886432
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
.+..+.. ...|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|...|
T Consensus 202 -------ElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 202 -------ELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -------EEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 3333332 35688999999998999999999999999999999999988889999999999989999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeec
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~ 247 (519)
+|.+|.....++ +.....|.++|.++++.++|+|+++++-+
T Consensus 274 tVSlWSP~skeP-------------------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~D-------- 314 (545)
T KOG1272|consen 274 TVSLWSPNSKEP-------------------------------LVKILCHRGPVSSIAVDRGGRYMATTGLD-------- 314 (545)
T ss_pred eEEecCCCCcch-------------------------------HHHHHhcCCCcceEEECCCCcEEeecccc--------
Confidence 999998776542 33344677899999999999999998877
Q ss_pred ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe-CCCC----Cce
Q 010051 248 SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD-TESV----PPI 322 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd-~~~~----~~~ 322 (519)
..++|||++....+..... ..+...++||..| +++.+....+.||. .-.+ ...
T Consensus 315 --r~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg------------------lLA~~~G~~v~iw~d~~~~s~~~~~p 372 (545)
T KOG1272|consen 315 --RKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG------------------LLALSYGDHVQIWKDALKGSGHGETP 372 (545)
T ss_pred --cceeEeeeccccccceeec--CCCcccccccccc------------------ceeeecCCeeeeehhhhcCCCCCCcc
Confidence 7999999987653332222 3456677777755 66677777899994 2221 111
Q ss_pred EEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010051 323 AILAGLHYAAITDIAWSNNARYLALSSQDGY 353 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 353 (519)
+.-.. ..+.|..+.|.|-...|-.|...|.
T Consensus 373 Ym~H~-~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 373 YMNHR-CGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred hhhhc-cCcccccceeccHHHeeeccccCCc
Confidence 11111 3468999999998888887766654
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=3.1e-14 Score=134.68 Aligned_cols=219 Identities=18% Similarity=0.187 Sum_probs=139.5
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcC---CCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC--
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGA---DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG-- 77 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 77 (519)
+...+....|...+.+.+|+|||+.|+..+. ...|++||+.+++.... ..+.+....+.|+|++.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l----------~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV----------ASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----------ccCCCCccCceECCCCCEE
Confidence 3444555567788999999999999987764 34699999988764321 11222333556666643
Q ss_pred ----------eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCceEEEeccc
Q 010051 78 ----------ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-DN--SCIIWDVNKGSVLQILDAH 144 (519)
Q Consensus 78 ----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~h 144 (519)
.|++||+.++. ...+..+......++|+|||++|+.++. +| .|+++|+.+++... +..+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~ 334 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ 334 (433)
T ss_pred EEEEeCCCCceEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC
Confidence 46677776541 2334445555678899999998887764 44 47777877766433 3233
Q ss_pred ccCeEEEEEcCCCCeEEEeeCCC---eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCccee
Q 010051 145 FHYVQGVAWDPLSKYVASLSSDR---TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFF 221 (519)
Q Consensus 145 ~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 221 (519)
......++|+|+|++|+..+.++ .|.+||+.+++..... .....
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt---------------------------------~~~~~ 381 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT---------------------------------PGSLD 381 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC---------------------------------CCCCC
Confidence 34455789999999998765443 5899998776421110 00112
Q ss_pred eEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC
Q 010051 222 RRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 222 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp 281 (519)
....|+|||++++..+... ....+++++... .....+..+.+.+...+|+|
T Consensus 382 ~~p~~spdG~~i~~~s~~~-------g~~~L~~~~~~g--~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREG-------GRGVLAAVSTDG--RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecC-------CceEEEEEECCC--CceEEcccCCCCCCCCccCC
Confidence 3578999999988876532 124677787743 33344444555666777776
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=128.90 Aligned_cols=165 Identities=16% Similarity=0.258 Sum_probs=117.9
Q ss_pred CCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 13 TKPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 13 ~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
+..|+|+.|-|.+. .++++-.+|.+++||..--..... .+....+++....|-........
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~-----------------p~~~~~k~~~~f~i~t~ksk~~r- 280 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA-----------------PSYQALKDGDQFAILTSKSKKTR- 280 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC-----------------CcccccCCCCeeEEeeeeccccC-
Confidence 36899999999665 566677899999998732110000 00111122222222211111110
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
..+..+.--.+.|...+|+|||++||+.+.||.++|+|..+.+++..++.--+...|++|+|||++|++|++|-.|.|
T Consensus 281 --NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 281 --NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred --CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEE
Confidence 122223334568999999999999999999999999999999888877777789999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
|.+...+ .+.....|.++|..++|.|
T Consensus 359 wSf~erR-------------------------------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERR-------------------------------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccce-------------------------------EEEeccccccceeeEeecc
Confidence 9987654 2445567899999999998
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.8e-14 Score=121.34 Aligned_cols=256 Identities=13% Similarity=0.141 Sum_probs=177.9
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC------CceEEEe-cccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK------GSVLQIL-DAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
+.+.+.+|.+.|+++.|+.++++|++|+.|..+++|++.. .++++.. ..|...|.|++|......+++|+.++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3455678999999999999999999999999999999864 3455544 34568999999999889999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeec
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~ 247 (519)
+|.+.|+.+.+.. .++......+.|+.+..+|-...+++.+.+
T Consensus 128 ~VI~HDiEt~qsi-----------------------------~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-------- 170 (609)
T KOG4227|consen 128 TVIKHDIETKQSI-----------------------------YVANENNNRGDVYHMDQHPTDNTLIVVTRA-------- 170 (609)
T ss_pred eeEeeecccceee-----------------------------eeecccCcccceeecccCCCCceEEEEecC--------
Confidence 9999999886532 122222334678999999998888887766
Q ss_pred ccceEEEEeccCCCccccc--CCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC-ceEE
Q 010051 248 SINSAYIFSRKDLSRPALQ--LPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP-PIAI 324 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~ 324 (519)
+.|.+||.+....+... +.........+.|+|... .+|++.+..+-+.+||.+... .+..
T Consensus 171 --~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P---------------~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 171 --KLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP---------------ALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred --ceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc---------------eeEEeccccCCCCceeeccccchHHh
Confidence 68999999876543322 223345677888998754 457777777889999987543 2221
Q ss_pred Eecc--cc---ccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcc---cccCCCCcccccCCccEEEee
Q 010051 325 LAGL--HY---AAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKV---SKDENKSPLVTKSEDMIIEAS 396 (519)
Q Consensus 325 ~~~~--~~---~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~ 396 (519)
..+. .. ..--.+.|+|+|..|++--....-.+||+-+..+ .+....|.. .....+.+++|-.|-. +++|
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~--~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tG 310 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC--FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATG 310 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc--eeEeccCCCCcceeeeeeeeeeeeccee-eecc
Confidence 1110 11 1124578999999998877777778888877532 221112111 1234556666665544 8888
Q ss_pred cCCcee-eecCC
Q 010051 397 TNDKLV-TAETK 407 (519)
Q Consensus 397 ~~d~~i-~~~~~ 407 (519)
+++--+ +|...
T Consensus 311 SD~~~i~~WklP 322 (609)
T KOG4227|consen 311 SDHWGIHIWKLP 322 (609)
T ss_pred CcccceEEEecC
Confidence 877666 66644
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6.4e-14 Score=133.88 Aligned_cols=258 Identities=18% Similarity=0.212 Sum_probs=168.5
Q ss_pred CCCEEEEEEecC--CCEEEEEcCCCcEEEEEec-CCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 13 TKPVLTLDFHPI--SGLLATGGADYDIKIWLIN-SGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 13 ~~~V~~~~~sp~--~~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
...|+.+.+-.+ ..+|++|+.||.|+||+-- .+....+ -|.-|.--++
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e---------------------------LVTaw~~Ls~-- 1159 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE---------------------------LVTAWSSLSD-- 1159 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCce---------------------------eEEeeccccc--
Confidence 456888888653 3488899999999999632 2211000 0111211000
Q ss_pred cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-cccCeEEEEEc-CCCCeEEEeeCCC
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-HFHYVQGVAWD-PLSKYVASLSSDR 167 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~-~~~~~l~~~~~dg 167 (519)
.+.+..+.-.-+.|.....+|++++.-..|+|||.......+.+.. ....|+++.-+ ..|+.|+.|..||
T Consensus 1160 --------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1160 --------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred --------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence 0111111125568888777788877789999999988877776643 34456666554 3579999999999
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcce--eeEEEEccCCCe-EEEecCCcceee
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSF--FRRLAWSPDGSF-LLVPAGSYKISS 244 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~sp~g~~-l~~~~~~~~~~~ 244 (519)
.|++||.+....... ...+. .|... |..+.+.+.|-. |++++.+
T Consensus 1232 svRvyD~R~a~~ds~--------------------------v~~~R--~h~~~~~Iv~~slq~~G~~elvSgs~~----- 1278 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSL--------------------------VCVYR--EHNDVEPIVHLSLQRQGLGELVSGSQD----- 1278 (1387)
T ss_pred ceEEeecccCCcccc--------------------------ceeec--ccCCcccceeEEeecCCCcceeeeccC-----
Confidence 999999987643211 11121 23333 888999887755 8887777
Q ss_pred eecccceEEEEeccCC-CcccccCCCCC--C-CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC
Q 010051 245 MSESINSAYIFSRKDL-SRPALQLPGAS--K-PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP 320 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~-~~~~~~~~~~~--~-~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~ 320 (519)
|.|++||++.. .........|- + ..+++..+++.. .+++|+. +.|.||++. |+
T Consensus 1279 -----G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap----------------iiAsGs~-q~ikIy~~~-G~ 1335 (1387)
T KOG1517|consen 1279 -----GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP----------------IIASGSA-QLIKIYSLS-GE 1335 (1387)
T ss_pred -----CeEEEEecccCcccccceeeeccccCccceeeeeccCCC----------------eeeecCc-ceEEEEecC-hh
Confidence 79999999863 22222222222 2 489999999874 3455555 789999987 33
Q ss_pred ceEEEec------cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 321 PIAILAG------LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 321 ~~~~~~~------~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
.+..+.. ...+.+.+++|+|..-+||+|+.|.+|.||......
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 3333322 134578999999999999999999999999876653
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=5.9e-14 Score=124.34 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=148.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCceEEEec----ccccCeEEEEEcCCC-CeEEEeeCCCeEEEEecCCCCccccccccc
Q 010051 113 TDGAFLLSGSVDNSCIIWDVNKGSVLQILD----AHFHYVQGVAWDPLS-KYVASLSSDRTCRIYANRPTKSKGVEKMNY 187 (519)
Q Consensus 113 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (519)
+.+--|+.|-.-|.|.+.|....+..+.+. -....|+++.|-|.+ ..|+++-.+|.+.+||............
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~-- 260 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY-- 260 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc--
Confidence 456667888888999999876633222121 123689999999854 4567777899999998743211111000
Q ss_pred eeeEEEeccCcccccC--CccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccc
Q 010051 188 VCQHVITKAGQHSTDD--SKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL 265 (519)
Q Consensus 188 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 265 (519)
..+...+...... .......+.......+.|..++|+|||++||+.+.+ +.++|||.... ...-
T Consensus 261 ---~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD----------GfLRvF~fdt~-eLlg 326 (636)
T KOG2394|consen 261 ---QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD----------GFLRIFDFDTQ-ELLG 326 (636)
T ss_pred ---cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecC----------ceEEEeeccHH-HHHH
Confidence 0000000000000 000011222222234578899999999999999988 69999998643 3333
Q ss_pred cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcC-----
Q 010051 266 QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSN----- 340 (519)
Q Consensus 266 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~----- 340 (519)
.....-+...|++||||| ++|++|+.|.-|.||.+...+.+..-.+ |..+|+.++|.|
T Consensus 327 ~mkSYFGGLLCvcWSPDG----------------KyIvtGGEDDLVtVwSf~erRVVARGqG-HkSWVs~VaFDpytt~~ 389 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDG----------------KYIVTGGEDDLVTVWSFEERRVVARGQG-HKSWVSVVAFDPYTTST 389 (636)
T ss_pred HHHhhccceEEEEEcCCc----------------cEEEecCCcceEEEEEeccceEEEeccc-cccceeeEeeccccccc
Confidence 444556789999999999 6678888888999999999999999999 999999999983
Q ss_pred ------------------------------CC-------------CEEEEEeCCCcEEEEEecCCcccc
Q 010051 341 ------------------------------NA-------------RYLALSSQDGYCTLVEFENDELGI 366 (519)
Q Consensus 341 ------------------------------~g-------------~~l~~~~~dg~i~vwd~~~~~~~~ 366 (519)
++ -.|.+.+.|-.+.+||+....+..
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 01 246788899999999998765433
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=8.6e-13 Score=120.25 Aligned_cols=294 Identities=11% Similarity=0.110 Sum_probs=161.9
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC----------CeEEEEEcc
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG----------GELIIWKLH 85 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~i~vw~~~ 85 (519)
-..+.|+|||+++++++.||.|.++|+.+++.+.++.. ......++++++| +.+.++|..
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----------CCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 34578999999999999999999999999998877652 3445678888875 667788877
Q ss_pred cCCCcccceeeecccc-------CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceEE-EecccccCeEEEEEcCC
Q 010051 86 TTETGQAWKVLKNLSF-------HRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNKGSVLQ-ILDAHFHYVQGVAWDPL 156 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~ 156 (519)
+. +.++.+.. ....+..+..+|....++..-. .+.|.+.|....+.+. .............|+|+
T Consensus 109 tl------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 109 TL------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp T--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred cc------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 66 44444332 3456788888898886655555 4899999987754332 22223356678999999
Q ss_pred CCeEEEe-eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC-CeEE
Q 010051 157 SKYVASL-SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG-SFLL 234 (519)
Q Consensus 157 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~ 234 (519)
+++++.+ ..+..|-++|..+.+......... ..++.+...+ .+|.. ...+
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~---------------------------~p~~~~~~~~-php~~g~vw~ 234 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGK---------------------------KPHPGPGANF-PHPGFGPVWA 234 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS---------------------------SBEETTEEEE-EETTTEEEEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccc---------------------------cccccccccc-cCCCcceEEe
Confidence 9988664 456789999988765321110000 0011111111 11211 1111
Q ss_pred EecCCc-ceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE
Q 010051 235 VPAGSY-KISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI 313 (519)
Q Consensus 235 ~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v 313 (519)
...... .+..++. ..+.+|+...+ +.+..+.....+ .-+..||+++++.....- +...+.|.+
T Consensus 235 ~~~~~~~~~~~ig~--~~v~v~d~~~w-kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~------------~~~~~~v~v 298 (369)
T PF02239_consen 235 TSGLGYFAIPLIGT--DPVSVHDDYAW-KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFL------------NPDADTVQV 298 (369)
T ss_dssp EEBSSSSEEEEEE----TTT-STTTBT-SEEEEEE-SSSS---EE--TT-SEEEEE-TT-------------SSHT-EEE
T ss_pred eccccceecccccC--CccccchhhcC-eEEEEEECCCCc-ceeecCCCCccEEeeccC------------CCCCceEEE
Confidence 111100 0000111 23334555443 333444444444 667789988654322000 123479999
Q ss_pred EeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC--CcEEEEEecCCcccceee
Q 010051 314 YDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD--GYCTLVEFENDELGIPIS 369 (519)
Q Consensus 314 wd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 369 (519)
+|.++.+.+..+.......+..+.|+++|+++..+..+ +.|.|||..+.+....+.
T Consensus 299 iD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 299 IDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999987777754123359999999999987766554 369999999887766655
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=7.2e-14 Score=131.67 Aligned_cols=209 Identities=16% Similarity=0.101 Sum_probs=132.3
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC---CeEEEEecCCCCccccccccceeeEEEeccCcccc
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD---RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHST 201 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (519)
..|+++|. .|.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++.....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------ 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------ 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------------------
Confidence 46888887 455445566677889999999999999877643 35999999876421110
Q ss_pred cCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC
Q 010051 202 DDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp 281 (519)
...+.+...+|+|||+.|+...... ....++++|... .....+..+........|+|
T Consensus 237 --------------~~~g~~~~~~~SPDG~~la~~~~~~-------g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSp 293 (427)
T PRK02889 237 --------------NFKGSNSAPAWSPDGRTLAVALSRD-------GNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSP 293 (427)
T ss_pred --------------cCCCCccceEECCCCCEEEEEEccC-------CCceEEEEECCC--CCcEECCCCCCCCcCeEEcC
Confidence 1122345789999999998654321 113456666543 23444555555567789999
Q ss_pred CcccccccCCCCcccccceEEEEEecCCe--EEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEE
Q 010051 282 LAFNLRESNSAGFFKLPYRLIFAIATLNS--LYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDG---YCTL 356 (519)
Q Consensus 282 ~~~~l~~~~~~g~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg---~i~v 356 (519)
||+.++. +...++. |+++++.++...... . +.......+|||||++|+..+.++ .|.+
T Consensus 294 DG~~l~f---------------~s~~~g~~~Iy~~~~~~g~~~~lt-~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 294 DGRSIYF---------------TSDRGGAPQIYRMPASGGAAQRVT-F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CCCEEEE---------------EecCCCCcEEEEEECCCCceEEEe-c-CCCCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 9965432 2222234 444555555433322 2 233345689999999998877654 5999
Q ss_pred EEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCc
Q 010051 357 VEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 357 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 400 (519)
||+.+++... +... .....+.|+|||..|+..+.++
T Consensus 357 ~d~~~g~~~~---lt~~-----~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 357 QDLATGQVTA---LTDT-----TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EECCCCCeEE---ccCC-----CCccCceECCCCCEEEEEEecC
Confidence 9998775322 1111 1235689999999998877543
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.9e-13 Score=114.15 Aligned_cols=251 Identities=15% Similarity=0.195 Sum_probs=165.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-cccCeEEEEEcCCCCe-EEEeeCCCeEEEEecCCCCcc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-HFHYVQGVAWDPLSKY-VASLSSDRTCRIYANRPTKSK 180 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 180 (519)
...+..++|++.-..++++..|-.|++|+-.. .+...++. ....|++++|-|.+.. |+.+. -+-|.+|.....-..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccc
Confidence 45678899998666788999999999999766 44444543 3468999999997654 45554 556999976543211
Q ss_pred ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCC
Q 010051 181 GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDL 260 (519)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~ 260 (519)
... ..........++....+ .+|+++.|.+||..+++++-.. ..+.|||....
T Consensus 176 ~r~-----------------~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs---------ssi~iWdpdtg 228 (445)
T KOG2139|consen 176 NRN-----------------IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS---------SSIMIWDPDTG 228 (445)
T ss_pred ccc-----------------cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc---------ceEEEEcCCCC
Confidence 100 00001112222333333 7899999999999999887543 68999999866
Q ss_pred CcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC-CCCCceEEEeccccccEEEEEEc
Q 010051 261 SRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT-ESVPPIAILAGLHYAAITDIAWS 339 (519)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~i~~~~~s 339 (519)
...... .-..+.+.-+.||||| .+++++.-|+..++|+. ++.....-..+ .+.|...+|+
T Consensus 229 ~~~pL~-~~glgg~slLkwSPdg----------------d~lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWs 289 (445)
T KOG2139|consen 229 QKIPLI-PKGLGGFSLLKWSPDG----------------DVLFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWS 289 (445)
T ss_pred Cccccc-ccCCCceeeEEEcCCC----------------CEEEEecccceeeeehhcccceecceecc--CCceeeeeec
Confidence 543222 2345678899999999 67888889999999954 44444444444 5689999999
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCc----cc------c---eeeecC-----CcccccCCCCcccccCCccEEEeecCCce
Q 010051 340 NNARYLALSSQDGYCTLVEFENDE----LG------I---PISLSG-----NKVSKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 340 ~~g~~l~~~~~dg~i~vwd~~~~~----~~------~---~~~~~~-----~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
|+|++|+.++. |.-++|.+...+ .. . ...+.. ......+...+++|.|.|.+|++.-.++.
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 99998766543 444555543211 00 0 001110 01123578899999999999998876665
Q ss_pred e
Q 010051 402 V 402 (519)
Q Consensus 402 i 402 (519)
.
T Consensus 369 ~ 369 (445)
T KOG2139|consen 369 F 369 (445)
T ss_pred h
Confidence 3
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2.3e-15 Score=130.65 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=176.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGV 182 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 182 (519)
......+.|+.+|++|+.|+.-|.|..+|..++++...+... ..|.++.|-.+.++|+++ ....+.|||-..-+.-
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElH-- 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELH-- 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEe--
Confidence 445678999999999999999999999999999988887654 678999999887777765 5678999987654321
Q ss_pred ccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc
Q 010051 183 EKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR 262 (519)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 262 (519)
...-...+..+.|-|.--+|++++.. +-+..-|+..+ .
T Consensus 205 -------------------------------Clk~~~~v~rLeFLPyHfLL~~~~~~----------G~L~Y~DVS~G-k 242 (545)
T KOG1272|consen 205 -------------------------------CLKRHIRVARLEFLPYHFLLVAASEA----------GFLKYQDVSTG-K 242 (545)
T ss_pred -------------------------------ehhhcCchhhhcccchhheeeecccC----------CceEEEeechh-h
Confidence 11223457789999987777766655 56777777543 4
Q ss_pred ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCC
Q 010051 263 PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNA 342 (519)
Q Consensus 263 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g 342 (519)
.+..+....+.+..+.-+|-+ ..+-.|...|+|.+|.....+++..+.. |.++|.++++.++|
T Consensus 243 lVa~~~t~~G~~~vm~qNP~N----------------aVih~GhsnGtVSlWSP~skePLvKiLc-H~g~V~siAv~~~G 305 (545)
T KOG1272|consen 243 LVASIRTGAGRTDVMKQNPYN----------------AVIHLGHSNGTVSLWSPNSKEPLVKILC-HRGPVSSIAVDRGG 305 (545)
T ss_pred hhHHHHccCCccchhhcCCcc----------------ceEEEcCCCceEEecCCCCcchHHHHHh-cCCCcceEEECCCC
Confidence 455555566777788888865 4456677778999999999999999988 99999999999999
Q ss_pred CEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCC
Q 010051 343 RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETK 407 (519)
Q Consensus 343 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~ 407 (519)
+|+||++.|..++|||+..-.....+.. ......+++|..|.+.+ +-.+..-+|...
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-------p~~a~~ls~SqkglLA~-~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-------PHPASNLSLSQKGLLAL-SYGDHVQIWKDA 362 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-------CCCccccccccccceee-ecCCeeeeehhh
Confidence 9999999999999999987653333222 23456677887666544 444445556544
No 228
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.2e-13 Score=118.94 Aligned_cols=323 Identities=15% Similarity=0.249 Sum_probs=191.8
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------CCeEEEEEcc
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------GGELIIWKLH 85 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~i~vw~~~ 85 (519)
=+-+.|||-|.||++-...| |.+|-=.+-...+++..+.. .-+...+..-+-+.|+|. +..+.|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~V-q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGV-QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCc-eeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 35689999999999998877 89996544444444321110 111122223333444432 4889999999
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
++.....+.++ .+....-.-..||.|++++|.... ..|.||+..+-.++..-.-.-..|....|+|.++.||.=..
T Consensus 291 tG~lkrsF~~~---~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 291 TGLLKRSFPVI---KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccchhcceecc---CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98543333332 111222234689999999998876 45999997664443322223467899999999777664221
Q ss_pred C-----CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc
Q 010051 166 D-----RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY 240 (519)
Q Consensus 166 d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 240 (519)
. ..+.+..+...+.... ..-+.-.=..+.|-.+|.+|++-....
T Consensus 367 e~~~~parvtL~evPs~~~iRt-------------------------------~nlfnVsDckLhWQk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRT-------------------------------KNLFNVSDCKLHWQKSGDYLCVKVDRH 415 (698)
T ss_pred cccCCcceEEEEecCccceeee-------------------------------ccceeeeccEEEeccCCcEEEEEEEee
Confidence 1 1222222222211100 000111122578888999998754332
Q ss_pred ceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe-cCCeEEEEeCCC-
Q 010051 241 KISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA-TLNSLYIYDTES- 318 (519)
Q Consensus 241 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~-~d~~i~vwd~~~- 318 (519)
.-.-+.....++.|+.++...-++..+. ....|...+|-|.|..++ +++|. ...++.+|.+.+
T Consensus 416 tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~--------------vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFA--------------VISGNTVKNTVSFYAVETN 480 (698)
T ss_pred ccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEE--------------EEEccccccceeEEEeecC
Confidence 2211223334677777776555554433 456788999999996543 22222 236788898773
Q ss_pred C---CceEEEeccccccEEEEEEcCCCCEEEEE---eCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccE
Q 010051 319 V---PPIAILAGLHYAAITDIAWSNNARYLALS---SQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMI 392 (519)
Q Consensus 319 ~---~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 392 (519)
. +.+..+. ....+.+.|+|.|++++.+ |..|.+.++|.....+. ....+. ....+.+-|.|.|++
T Consensus 481 ~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~~e-----h~~at~veWDPtGRY 551 (698)
T KOG2314|consen 481 IKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK-DTASPE-----HFAATEVEWDPTGRY 551 (698)
T ss_pred CCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh-hccCcc-----ccccccceECCCCCE
Confidence 2 2333333 3557889999999998876 45688999998753322 122222 235677899999999
Q ss_pred EEeecCC
Q 010051 393 IEASTND 399 (519)
Q Consensus 393 l~~~~~d 399 (519)
+++++.-
T Consensus 552 vvT~ss~ 558 (698)
T KOG2314|consen 552 VVTSSSS 558 (698)
T ss_pred EEEeeeh
Confidence 9998754
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.5e-13 Score=127.01 Aligned_cols=209 Identities=12% Similarity=0.110 Sum_probs=138.6
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC---CCeEEEEecCCCCccccccccceeeEEEeccCcccc
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS---DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHST 201 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (519)
..|+++|.. +...+.+..|...+....|+|||+.|+..+. +..|.+||+.+++.....
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------ 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------ 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence 479999984 4445566678889999999999999887764 468999999876421110
Q ss_pred cCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC
Q 010051 202 DDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp 281 (519)
.+.+.+...+|+|||+.|+...... ....|++||+... ....+..+........|+|
T Consensus 243 --------------~~~g~~~~~~~SPDG~~la~~~~~~-------g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 243 --------------NFPGMTFAPRFSPDGRKVVMSLSQG-------GNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred --------------cCCCcccCcEECCCCCEEEEEEecC-------CCceEEEEECCCC--ceEEccCCCCccCceeEcC
Confidence 1223455789999999987654321 1246888888643 2344555556677899999
Q ss_pred CcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEE
Q 010051 282 LAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD---GYCTLVE 358 (519)
Q Consensus 282 ~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vwd 358 (519)
||..++..+.. .....|++||+.++...... . +...+....|+|||++|+..+.+ ..|.+|+
T Consensus 300 DG~~i~f~s~~-------------~g~~~Iy~~d~~g~~~~~lt-~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 300 DGSQIVFESDR-------------SGSPQLYVMNADGSNPRRIS-F-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred CCCEEEEEECC-------------CCCCeEEEEECCCCCeEEee-c-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEE
Confidence 99655322211 11237889998776554433 2 34556778999999999887654 3577788
Q ss_pred ecCCcccceeeecCCcccccCCCCcccccCCccEEEeecC
Q 010051 359 FENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTN 398 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 398 (519)
+..+.. ..+. . ...+..+.|+|||+.|+..+.
T Consensus 365 ~~~~~~-~~lt--~-----~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 365 PDGSGE-RILT--S-----GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCce-Eecc--C-----CCCCCCCeECCCCCEEEEEEc
Confidence 755432 1111 1 124567899999999887654
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=5e-13 Score=121.75 Aligned_cols=313 Identities=14% Similarity=0.131 Sum_probs=177.0
Q ss_pred CEE-EEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEEEEEcccCCCccccee
Q 010051 26 GLL-ATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELIIWKLHTTETGQAWKV 95 (519)
Q Consensus 26 ~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~vw~~~~~~~~~~~~~ 95 (519)
+++ ++-..++.|.|.|..+.+.+.+++..... -..+.|+|+ ++.|.++|+.+. +.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---------h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~------~~ 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---------HAGLKFSPDGRYLYVANRDGTVSVIDLATG------KV 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---------EEEEE-TT-SSEEEEEETTSEEEEEETTSS------SE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---------eeEEEecCCCCEEEEEcCCCeEEEEECCcc------cE
Confidence 444 45556899999999999888877643211 122334443 588999999887 56
Q ss_pred eeccccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceEEEeccc-------ccCeEEEEEcCCCCeEEEeeC-C
Q 010051 96 LKNLSFHRKDVLDLQWSTDGAFLLSGS-VDNSCIIWDVNKGSVLQILDAH-------FHYVQGVAWDPLSKYVASLSS-D 166 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~~~~~-d 166 (519)
+.++.. .....++++|+||++++++. ..+.+.++|.++.+.++.+... ...+..+..+|....++..-. .
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 666653 34578899999999998775 5899999999999988877543 245778888888886665554 4
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~ 246 (519)
+.|.+.|....+..... ............|+|++++++++....
T Consensus 150 ~~I~vVdy~d~~~~~~~------------------------------~i~~g~~~~D~~~dpdgry~~va~~~s------ 193 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVT------------------------------TIKVGRFPHDGGFDPDGRYFLVAANGS------ 193 (369)
T ss_dssp TEEEEEETTTSSCEEEE------------------------------EEE--TTEEEEEE-TTSSEEEEEEGGG------
T ss_pred CeEEEEEecccccccee------------------------------eecccccccccccCcccceeeeccccc------
Confidence 88888887664321100 001123455789999999988764332
Q ss_pred cccceEEEEeccCCCccccc---CCCCCCCeEEEEEcCCc-ccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCce
Q 010051 247 ESINSAYIFSRKDLSRPALQ---LPGASKPVVAVRFCPLA-FNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI 322 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~-~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 322 (519)
+.+-++|..+....... ...|..+...+ .+|.. ...++... + ...++.-....+.+||..+.+.+
T Consensus 194 ---n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~-~------~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 194 ---NKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGL-G------YFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp ---TEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBS-S------SSEEEEEE--TTT-STTTBTSEE
T ss_pred ---ceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccc-c------ceecccccCCccccchhhcCeEE
Confidence 46666666543221111 11233334333 23322 11221111 1 12333333446678999999999
Q ss_pred EEEeccccccEEEEEEcCCCCEEEEE----eCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEee--
Q 010051 323 AILAGLHYAAITDIAWSNNARYLALS----SQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEAS-- 396 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g~~l~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-- 396 (519)
..+.. ...+ ..+..+|++++|.+. ...+.|.|+|..+.+....+... ....+..+.|++||..+..+
T Consensus 263 ~~I~~-~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~-----~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 263 KTIPT-QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG-----PGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp EEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH-----HT--EEEEEE-TTSSEEEEEEE
T ss_pred EEEEC-CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc-----CCCcEeccEECCCCCEEEEEEe
Confidence 99987 5555 788999999999988 34489999999887443332211 11237789999999866543
Q ss_pred cCC-ceeeecCCC
Q 010051 397 TND-KLVTAETKE 408 (519)
Q Consensus 397 ~~d-~~i~~~~~~ 408 (519)
..+ .+++++...
T Consensus 336 ~~~~~i~v~D~~T 348 (369)
T PF02239_consen 336 DGNGAIVVYDAKT 348 (369)
T ss_dssp --TTEEEEEETTT
T ss_pred cCCCEEEEEECCC
Confidence 344 455665544
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.58 E-value=1.1e-12 Score=115.72 Aligned_cols=310 Identities=16% Similarity=0.193 Sum_probs=197.3
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---------------
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG--------------- 76 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------- 76 (519)
-.-++..++|||.|.+|++....| |.+|.-.....+..+. ...|..+.|+|.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-----------~~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-----------HPDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-----------cCCceecccCcccceeeeeccCCccChh
Confidence 345788999999999999988766 9999877665443332 2334445555542
Q ss_pred ---------CeEEEEEcccCCCcccceeeeccccCCCC--eE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCceE-EEecc
Q 010051 77 ---------GELIIWKLHTTETGQAWKVLKNLSFHRKD--VL-DLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL-QILDA 143 (519)
Q Consensus 77 ---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~ 143 (519)
..+.+||+.++ ..+..+.....+ .+ -+.|+-+.+++|-. ....++|+++ ++... .-+..
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASG------MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred hccCCccccCceeEEeccCc------eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence 36888888877 566666554444 44 68888888877655 3456999997 44321 11111
Q ss_pred -cccCeEEEEEcCCCC--eEEE-----eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecC
Q 010051 144 -HFHYVQGVAWDPLSK--YVAS-----LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDE 215 (519)
Q Consensus 144 -h~~~v~~~~~~~~~~--~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (519)
....|....|+|.++ .|++ .+.++++++|.+..+....... ++.
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------------------------lfk-- 222 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------------------------LFK-- 222 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------------------------eEe--
Confidence 135688889998643 3332 3456788888776433211110 011
Q ss_pred CCcceeeEEEEccCCCeEEEecCCcc-eeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCc
Q 010051 216 TLPSFFRRLAWSPDGSFLLVPAGSYK-ISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGF 294 (519)
Q Consensus 216 ~~~~~i~~~~~sp~g~~l~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~ 294 (519)
..=..+.|.+.|++|++-..... ..-......+++++++.....++ .....++|...+|.|.+..++
T Consensus 223 ---~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf~W~p~S~~F~------- 290 (561)
T COG5354 223 ---VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDFTWEPLSSRFA------- 290 (561)
T ss_pred ---ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--eccccccceeeeecccCCcee-------
Confidence 11126889999999887432211 00001122578888887433322 225678999999999986543
Q ss_pred ccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEecCCcccceeeec
Q 010051 295 FKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD---GYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 295 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~ 371 (519)
+++|-..-.+.++|++.. ....+. ...=+.+.|||.+++++.++.| |.+-+|+..+.-.... ...
T Consensus 291 -------vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~-~~~ 358 (561)
T COG5354 291 -------VISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG-AFN 358 (561)
T ss_pred -------EEecccccceeecccccc-eEEecC---CcccccccccCcccEEEEecCCccccceEEeccCCceEEEE-Eee
Confidence 455567788999999866 433333 4556778999999999998877 7899999876532211 111
Q ss_pred CCcccccCCCCcccccCCccEEEeecCC
Q 010051 372 GNKVSKDENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d 399 (519)
....+.+.|+||+.++.+....
T Consensus 359 ------~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 359 ------GLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ------cCCceEeeccCCceEEEecCCC
Confidence 2345667899999998776543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.4e-13 Score=111.38 Aligned_cols=113 Identities=22% Similarity=0.409 Sum_probs=86.3
Q ss_pred ceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCccccc
Q 010051 219 SFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLP 298 (519)
Q Consensus 219 ~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~ 298 (519)
+.|..++|+|+|+.+++..+. ....+.+||.+ ...+..+ +...++.+.|+|+|++
T Consensus 60 ~~I~~~~WsP~g~~favi~g~--------~~~~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~------------- 114 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGS--------MPAKVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRF------------- 114 (194)
T ss_pred CceEEEEECcCCCEEEEEEcc--------CCcccEEEcCc--ccEeEee--cCCCceEEEECCCCCE-------------
Confidence 458999999999998876543 22589999996 3334444 3567889999999955
Q ss_pred ceEEEEEec---CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEecCC
Q 010051 299 YRLIFAIAT---LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQ------DGYCTLVEFEND 362 (519)
Q Consensus 299 ~~~~~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~------dg~i~vwd~~~~ 362 (519)
+++++. .|.|.+||+.+.+.+.... | ..++.++|||||++|+++.. |..++||++...
T Consensus 115 ---l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 115 ---LVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ---EEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 444432 3689999999888877765 3 35789999999999999864 788999999654
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.1e-12 Score=108.80 Aligned_cols=236 Identities=14% Similarity=0.162 Sum_probs=150.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccC--eEEEEEcCCCCeEE-EeeCC------CeEEEEecC
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY--VQGVAWDPLSKYVA-SLSSD------RTCRIYANR 175 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~-~~~~d------g~i~iwd~~ 175 (519)
....++|+.|..-+++|..+| .++|+.+--+.......+.+. +..+-| ..++|+ +|+.. ..+.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999888777 899998764332222222222 222222 245554 33332 469999932
Q ss_pred CCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEE
Q 010051 176 PTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIF 255 (519)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~ 255 (519)
..+. .........|..+.+.++ .|++... +.|++|
T Consensus 84 k~~~--------------------------------i~el~f~~~I~~V~l~r~--riVvvl~-----------~~I~Vy 118 (346)
T KOG2111|consen 84 KERC--------------------------------IIELSFNSEIKAVKLRRD--RIVVVLE-----------NKIYVY 118 (346)
T ss_pred cCcE--------------------------------EEEEEeccceeeEEEcCC--eEEEEec-----------CeEEEE
Confidence 2221 111133466778888765 3444333 589999
Q ss_pred eccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEE-EecCCeEEEEeCCCCCc--eEEEecccccc
Q 010051 256 SRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA-IATLNSLYIYDTESVPP--IAILAGLHYAA 332 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~-~~~d~~i~vwd~~~~~~--~~~~~~~~~~~ 332 (519)
...+.-+.+..+.....|---++.+|.... ..++. |-.-|.|.|-|+...+. ...+.. |.+.
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k--------------~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~ 183 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNK--------------SLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDSD 183 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCc--------------eEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccCc
Confidence 887544444333322222223444443211 22222 23348999999987655 466677 9999
Q ss_pred EEEEEEcCCCCEEEEEeCCCc-EEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee-eecCC
Q 010051 333 ITDIAWSNNARYLALSSQDGY-CTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV-TAETK 407 (519)
Q Consensus 333 i~~~~~s~~g~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~ 407 (519)
|.+++++-+|..+||+|..|+ |||||..+++....+.- | .....+.+++|||+..+|+++++.+++ +....
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-G---~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-G---VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-C---CchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 999999999999999999998 79999999876554431 2 224688999999999999999999999 44333
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.1e-12 Score=111.98 Aligned_cols=266 Identities=14% Similarity=0.171 Sum_probs=175.4
Q ss_pred CCCCEEEEEEecCCC--EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeE-------EEEccCCCeEEEE
Q 010051 12 DTKPVLTLDFHPISG--LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINI-------LRFSPCGGELIIW 82 (519)
Q Consensus 12 h~~~V~~~~~sp~~~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~i~vw 82 (519)
-..+|++++|.-+++ .|...+.+..+..+.+.......... ...........|.. +...-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~---~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD---DAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc---cccccccccccccchhhcCCEEEEEecCCcEEEE
Confidence 345788888887665 44444456667777776655443321 00111122222222 2222457999999
Q ss_pred EcccCCCcccceeeeccccCCCCeEEEEEcCCCC-EEEEEeCC--CeEEEEEcCCCceEEEeccc---------ccCeEE
Q 010051 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGA-FLLSGSVD--NSCIIWDVNKGSVLQILDAH---------FHYVQG 150 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~vwd~~~~~~~~~~~~h---------~~~v~~ 150 (519)
....+.... ..+..+..+ ..+..+.-++... .+++|+.. ..+.+||+++.+.+..-+.- .-.+++
T Consensus 131 ~~k~~d~hs--s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 131 HDKSGDLHS--SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred eccCCcccc--ccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 988654211 122222222 4455666666444 56668888 88999999988554432211 123577
Q ss_pred EEEcCC--CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc
Q 010051 151 VAWDPL--SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP 228 (519)
Q Consensus 151 ~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 228 (519)
+.|-+. ...|++++.-+.+++||.+.++.. +....-....+.++...|
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP------------------------------V~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRP------------------------------VAQFDFLENPISSTGLTP 257 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcc------------------------------eeEeccccCcceeeeecC
Confidence 888876 788999999999999999865421 111112246788999999
Q ss_pred CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecC
Q 010051 229 DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATL 308 (519)
Q Consensus 229 ~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d 308 (519)
+|++++++... +.+..||++........+.+..+.+.++..+|.+ .++++++-|
T Consensus 258 ~gn~Iy~gn~~----------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~----------------~~las~GLD 311 (412)
T KOG3881|consen 258 SGNFIYTGNTK----------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH----------------PVLASCGLD 311 (412)
T ss_pred CCcEEEEeccc----------chhheecccCceeeccccCCccCCcceEEEcCCC----------------ceEEeeccc
Confidence 99999997766 6889999987766666788899999999999988 567888888
Q ss_pred CeEEEEeCCCCCceEEEeccccccEEEEEEcCC
Q 010051 309 NSLYIYDTESVPPIAILAGLHYAAITDIAWSNN 341 (519)
Q Consensus 309 ~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (519)
..|+|+|+++.+++..... ...++++-+.++
T Consensus 312 RyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 312 RYVRIHDIKTRKLLHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred eeEEEeecccchhhhhhhh--hccccEEEecCC
Confidence 9999999999777655443 445666665443
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=1.6e-13 Score=113.38 Aligned_cols=151 Identities=16% Similarity=0.252 Sum_probs=102.1
Q ss_pred EEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCC-CCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 223 RLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPG-ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 223 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
.+.|+|+|.+|++-.....-..-....+...+|.++....+...+.- ..++|.+++|+|+|..++
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~fa-------------- 75 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFA-------------- 75 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEE--------------
Confidence 79999999999886652100000111134555555444444444432 345799999999996542
Q ss_pred EEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEecCCcccceeeecCCccccc
Q 010051 302 IFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD---GYCTLVEFENDELGIPISLSGNKVSKD 378 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~ 378 (519)
++.|..++.|.+||++ ++.+..+. ...++.+.|||+|++|++++.+ |.|.+||+...+.... .. .
T Consensus 76 vi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~---~~-----~ 143 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST---FE-----H 143 (194)
T ss_pred EEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec---cc-----c
Confidence 3444556799999997 66666664 4678899999999999998754 6699999986533222 11 2
Q ss_pred CCCCcccccCCccEEEeecCC
Q 010051 379 ENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 379 ~~~~~~~~s~~~~~l~~~~~d 399 (519)
..+..+.|||||++|+++...
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEec
Confidence 346889999999999998753
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=3.7e-12 Score=121.17 Aligned_cols=208 Identities=16% Similarity=0.174 Sum_probs=134.7
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
..|.++|.... ....+..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+...+.+++|
T Consensus 170 ~~l~~~d~~g~-------~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 170 YELQVADYDGA-------NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred ceEEEEcCCCC-------CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 45777776533 223344466678999999999999987654 489999998886543 3345556778999
Q ss_pred cCCCCeEEE-eeCCC--eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC
Q 010051 154 DPLSKYVAS-LSSDR--TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG 230 (519)
Q Consensus 154 ~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g 230 (519)
+|+++.|+. .+.++ .|.+||+.++...... .+........|+|+|
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~--------------------------------~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT--------------------------------NGPGIDTEPSWSPDG 289 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECC--------------------------------CCCCCCCCEEECCCC
Confidence 999997764 44444 5888888765421110 011123357899999
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC-
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN- 309 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~- 309 (519)
++|+..+... ....++++++.... ...+..+...+..+.|+|+|.. ++.+..++
T Consensus 290 ~~l~~~s~~~-------g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~----------------i~~~~~~~~ 344 (417)
T TIGR02800 290 KSIAFTSDRG-------GSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDL----------------IAFVHREGG 344 (417)
T ss_pred CEEEEEECCC-------CCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCE----------------EEEEEccCC
Confidence 9998765432 11367888876432 2233334455677899999854 44444333
Q ss_pred --eEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCC
Q 010051 310 --SLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDG 352 (519)
Q Consensus 310 --~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 352 (519)
.|.+||+.++... .+.. ........|+|+|++|+.++.++
T Consensus 345 ~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 345 GFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ceEEEEEeCCCCCeE-EccC--CCCCCCceECCCCCEEEEEEeCC
Confidence 7899998876543 3332 22345678999999988877664
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.8e-12 Score=117.87 Aligned_cols=301 Identities=17% Similarity=0.248 Sum_probs=197.9
Q ss_pred CCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCcccc------ccccccccccccccCcceeEEEEccC---------
Q 010051 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQK------KIPTASYQNSLSYHGSAINILRFSPC--------- 75 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 75 (519)
.......|++|+....++|+|+.||.++|..+.+...-. .......-.++.+|...|.-+.|+..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 344668899999999999999999999999876543221 22233345678999999999999764
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceE-EEecccccCeEEEEEc
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVL-QILDAHFHYVQGVAWD 154 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~ 154 (519)
+|-|.||-+..+.- -.--.-....+-|.+++|+.||..++....||.|.|=.++..+.- ..+++ .....+.|+
T Consensus 92 ~GlIiVWmlykgsW----~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws 165 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSW----CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWS 165 (1189)
T ss_pred CceEEEEeeecccH----HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeec
Confidence 69999999987621 111111235677899999999999999999999999887544321 12222 234578899
Q ss_pred CCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc-------
Q 010051 155 PLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS------- 227 (519)
Q Consensus 155 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s------- 227 (519)
+|.+.++.+-..|.+.+||....-. .++...|....+... ...+..|..+.|.
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~---~Kl~~~c~Vn~tg~~-----------------s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFE---RKLEKDCEVNGTGIF-----------------SNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHH---HhhhhceEEeeeeee-----------------cCCCccccceeeccCccccC
Confidence 9999998888999999999876422 112222222111110 0111223334442
Q ss_pred -cCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe
Q 010051 228 -PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA 306 (519)
Q Consensus 228 -p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~ 306 (519)
|+...++++... +.+.|....+...|+..-.+ ..+..+.|+++|..|+.++.+.. +..-
T Consensus 226 ~pdrP~lavcy~n----------Gr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~d--------a~~~ 285 (1189)
T KOG2041|consen 226 PPDRPRLAVCYAN----------GRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSD--------ADEP 285 (1189)
T ss_pred CCCCCEEEEEEcC----------ceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCccc--------ccCc
Confidence 577788887666 56666655554455444333 67889999999988776655431 1111
Q ss_pred cC-CeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 307 TL-NSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 307 ~d-~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.| +.|.+|.. -|..+.+++. ....|++++|-..|-.+|.+ .|+.|++=+++
T Consensus 286 ~d~n~v~Fysp-~G~i~gtlkv-pg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 286 TDSNKVHFYSP-YGHIVGTLKV-PGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cccceEEEecc-chhheEEEec-CCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 22 46777764 4778888887 77889999998777555554 35555554443
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.3e-12 Score=118.33 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=135.9
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEE---EEEeCC--CeEEEEEcCCCceEEEecccccCeEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFL---LSGSVD--NSCIIWDVNKGSVLQILDAHFHYVQGV 151 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l---~~~~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~ 151 (519)
..|.+.|.... ....+......+...+|||||+.+ ++...+ ..|++.++.+++..+ +....+.....
T Consensus 165 ~~l~~~d~dG~-------~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p 236 (428)
T PRK01029 165 GELWSVDYDGQ-------NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP 236 (428)
T ss_pred ceEEEEcCCCC-------CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce
Confidence 35666666543 123344455567788999999752 233333 368888998776433 33344455678
Q ss_pred EEcCCCCeEEEeeC-CC----eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEE
Q 010051 152 AWDPLSKYVASLSS-DR----TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAW 226 (519)
Q Consensus 152 ~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (519)
.|+|||+.|+..+. +| .+.+|++..+.... .. .+.. .........+|
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~-------~~-------------------~lt~--~~~~~~~~p~w 288 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK-------PR-------------------RLLN--EAFGTQGNPSF 288 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCc-------ce-------------------Eeec--CCCCCcCCeEE
Confidence 99999998876553 23 34446655421000 00 0000 00112346799
Q ss_pred ccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe
Q 010051 227 SPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA 306 (519)
Q Consensus 227 sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~ 306 (519)
+|||+.|+..+... ....++++++.........+..+...+....|+|||+.++.....+
T Consensus 289 SPDG~~Laf~s~~~-------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~------------- 348 (428)
T PRK01029 289 SPDGTRLVFVSNKD-------GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK------------- 348 (428)
T ss_pred CCCCCEEEEEECCC-------CCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC-------------
Confidence 99999988866431 1135666665432222333444445677889999997654322111
Q ss_pred cCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeC---CCcEEEEEecCCcc
Q 010051 307 TLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQ---DGYCTLVEFENDEL 364 (519)
Q Consensus 307 ~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~ 364 (519)
....|++||+.+++...... ....+....|+|||++|+.... ...|+++++..++.
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 12479999999887654333 2345778999999998875443 24688888877643
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=1.6e-10 Score=105.89 Aligned_cols=232 Identities=16% Similarity=0.233 Sum_probs=141.4
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC-CceEEE---ec--------
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNK-GSVLQI---LD-------- 142 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~---~~-------- 142 (519)
.+.|..|.+.... ..+..+............++++|++++|+++.. +|.|.++++.. |..... +.
T Consensus 61 ~g~v~~~~i~~~~--g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 61 SGGVSSYRIDPDT--GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp TTEEEEEEEETTT--TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred CCCEEEEEECCCc--ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 4556666554431 122333333334556778999999999998875 89999999987 443222 11
Q ss_pred --ccccCeEEEEEcCCCCeEEEeeC-CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcc
Q 010051 143 --AHFHYVQGVAWDPLSKYVASLSS-DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPS 219 (519)
Q Consensus 143 --~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (519)
.......++.|+|+++++++... ...|.+|++......... ... + ......
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~------~~~-------------------~-~~~~G~ 192 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP------VDS-------------------I-KVPPGS 192 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE------EEE-------------------E-ECSTTS
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE------eec-------------------c-ccccCC
Confidence 11245688999999998877643 457999998765421000 000 0 112345
Q ss_pred eeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcc------cccCC---CCCCCeEEEEEcCCcccccccC
Q 010051 220 FFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRP------ALQLP---GASKPVVAVRFCPLAFNLRESN 290 (519)
Q Consensus 220 ~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~------~~~~~---~~~~~v~~~~~sp~~~~l~~~~ 290 (519)
..+.+.|+|+++++++..... +.|.+|++...... +..+. ........++++|||++|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s---------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l---- 259 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELS---------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL---- 259 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTT---------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE----
T ss_pred CCcEEEEcCCcCEEEEecCCC---------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE----
Confidence 577899999999998865432 57777777621111 11111 112367889999999553
Q ss_pred CCCcccccceEEEEEecCCeEEEEeCC--CCCc--eEEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEEec
Q 010051 291 SAGFFKLPYRLIFAIATLNSLYIYDTE--SVPP--IAILAGLHYAAITDIAWSNNARYLALSSQ-DGYCTLVEFE 360 (519)
Q Consensus 291 ~~g~~~~~~~~~~~~~~d~~i~vwd~~--~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~vwd~~ 360 (519)
+++....+.|.+|++. ++.+ +..+.. .....+.++++|+|++|+++.. ++.|.+|+++
T Consensus 260 -----------yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 260 -----------YVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -----------EEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred -----------EEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3333456899999984 2332 223332 2345789999999999998874 5789999986
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.4e-12 Score=122.45 Aligned_cols=219 Identities=17% Similarity=0.193 Sum_probs=135.9
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCC---CcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC--
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGAD---YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG-- 77 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 77 (519)
|+..+....+...+.+.+|||||+.||..+.+ ..|++||+.+++.... ....+.+....|+|++.
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l----------~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI----------TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc----------cCCCCCcCCeEECCCCCEE
Confidence 44455566777889999999999998876543 3689999988764321 11222333566776653
Q ss_pred ----------eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCCceEEEeccc
Q 010051 78 ----------ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-D--NSCIIWDVNKGSVLQILDAH 144 (519)
Q Consensus 78 ----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~h 144 (519)
.|.+||+.++. ...+..+........|+|||+.|+..+. + ..|+++++.+++..... ..
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~ 329 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FV 329 (430)
T ss_pred EEEEccCCCceEEEEECCCCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC
Confidence 45566766541 2334445555677899999998876654 3 36888888877654322 22
Q ss_pred ccCeEEEEEcCCCCeEEEeeCC-C--eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCccee
Q 010051 145 FHYVQGVAWDPLSKYVASLSSD-R--TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFF 221 (519)
Q Consensus 145 ~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 221 (519)
........|+|++++|+..+.+ + .|.+||+.+++..... . ....
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt------------------------------~---~~~~ 376 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT------------------------------D---TSLD 376 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc------------------------------C---CCCC
Confidence 2334467899999999877653 3 4778888765421110 0 0011
Q ss_pred eEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC
Q 010051 222 RRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 222 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp 281 (519)
....|+|+|+.++..+... ....+++++... .....+..+.+.+...+|+|
T Consensus 377 ~~p~~spdg~~i~~~~~~~-------g~~~l~~~~~~g--~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQ-------GRGVLMLVSING--RVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCceECCCCCEEEEEEecC-------CceEEEEEECCC--CceEECcCCCCCcCCCccCC
Confidence 2468999999999876542 113566777643 22333444455566677776
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.2e-10 Score=99.33 Aligned_cols=260 Identities=14% Similarity=0.173 Sum_probs=168.9
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
..+.+.++-|+|+|++++|.++..+|. .+.|.+..|.+++|.+.+.+-...
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~---------------------------~ggvaay~iD~~~G~Lt~ln~~~~-- 86 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGE---------------------------EGGVAAYRIDPDDGRLTFLNRQTL-- 86 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCC---------------------------cCcEEEEEEcCCCCeEEEeecccc--
Confidence 345566778888888888877766541 345566677777787777664332
Q ss_pred cccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC-CceEE--EecccccC----------eEEEEEcC
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNK-GSVLQ--ILDAHFHY----------VQGVAWDP 155 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~-~~~~~--~~~~h~~~----------v~~~~~~~ 155 (519)
...+.+.++++++|++|+++.. .|.|.++-++. |.+.. .+..|.+. +....+.|
T Consensus 87 ------------~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 87 ------------PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred ------------CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 2233488999999999998876 57899999865 43221 12234444 78889999
Q ss_pred CCCeEEEeeC-CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEE
Q 010051 156 LSKYVASLSS-DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLL 234 (519)
Q Consensus 156 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 234 (519)
++++|++... --.|.+|++..++......... ......+.|.|+|++++..
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v----------------------------~~G~GPRHi~FHpn~k~aY 206 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV----------------------------KPGAGPRHIVFHPNGKYAY 206 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCcccccccccc----------------------------CCCCCcceEEEcCCCcEEE
Confidence 9999988754 2468999998765432221110 2234466899999999998
Q ss_pred EecCCcceeeeecccceEEEEeccCCCccccc------CC---CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEE
Q 010051 235 VPAGSYKISSMSESINSAYIFSRKDLSRPALQ------LP---GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAI 305 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~------~~---~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~ 305 (519)
+.+.- .++|.+|........+.. ++ ........|..+|||++|..+..
T Consensus 207 ~v~EL---------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-------------- 263 (346)
T COG2706 207 LVNEL---------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-------------- 263 (346)
T ss_pred EEecc---------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--------------
Confidence 86543 367888877654222221 11 12345678899999965543322
Q ss_pred ecCCeEEEEeCCCCCc-eEEEe--ccccccEEEEEEcCCCCEEEEEeCC-CcEEEEEecCC
Q 010051 306 ATLNSLYIYDTESVPP-IAILA--GLHYAAITDIAWSNNARYLALSSQD-GYCTLVEFEND 362 (519)
Q Consensus 306 ~~d~~i~vwd~~~~~~-~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vwd~~~~ 362 (519)
....|.+|.+....- +..+. ..+...-+.+.|++.|++|+++..+ ..|.+|.++..
T Consensus 264 -g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 264 -GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred -CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 234677777654321 22111 1144456889999999999998876 46999988754
No 242
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=5.3e-12 Score=123.01 Aligned_cols=227 Identities=13% Similarity=0.070 Sum_probs=153.5
Q ss_pred eeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC-------ceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKG-------SVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
..+..+..|...+..++.++.. .+|++|+.||+|++|+...- +...++..-...+.++.+.+.++.+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4667777899999999988865 89999999999999998641 122333434578899999999999999999
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC-CC-eEEEecCCccee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD-GS-FLLVPAGSYKIS 243 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~-~l~~~~~~~~~~ 243 (519)
||.|++.++......... ..+.. +......+..+..-+|... +. .++.++..
T Consensus 1119 DG~v~~~~id~~~~~~~~---~~~~r-------------------i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~---- 1172 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRV---ATQVR-------------------IPNLKKDGVVVSMHAFTAIVQSHVLVYATDL---- 1172 (1431)
T ss_pred CCeEEEEEccccccccce---eeeee-------------------cccccCCCceEEeecccccccceeEEEEEec----
Confidence 999999998764211110 00000 0011111122222233222 22 34443333
Q ss_pred eeecccceEEEEeccCCCcc-cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCce
Q 010051 244 SMSESINSAYIFSRKDLSRP-ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI 322 (519)
Q Consensus 244 ~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 322 (519)
+.+..||.+..... ........+.|++++.+|.+ ++++.|...|.+.+||++-+.++
T Consensus 1173 ------~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~----------------~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1173 ------SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC----------------NWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred ------cceEEecchhhhhHHhhhcCccccceeEEEecCCc----------------eEEEEecCCceEEEEEeecCcee
Confidence 68889998654321 12234456789999999988 67888888889999999999888
Q ss_pred EEEeccccccEEEEEEcCCC---CEEEEEeC--CCcEEEEEecCCccccee
Q 010051 323 AILAGLHYAAITDIAWSNNA---RYLALSSQ--DGYCTLVEFENDELGIPI 368 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g---~~l~~~~~--dg~i~vwd~~~~~~~~~~ 368 (519)
....-.+..+|+.+..+|-. .+.++++. .+-|.+|++.++.....+
T Consensus 1231 ~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1231 LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 88776567888888887753 45555544 578999999988544443
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=8.4e-12 Score=118.73 Aligned_cols=219 Identities=16% Similarity=0.138 Sum_probs=134.6
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
.|.++|.... ....+..+...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+
T Consensus 180 ~l~~~d~~g~-------~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGA-------RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWS 251 (430)
T ss_pred EEEEECCCCC-------CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEEC
Confidence 4666676543 223344467788999999999999876643 379999998886543 33333445678999
Q ss_pred CCCCeEEE-eeCCC--eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 155 PLSKYVAS-LSSDR--TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 155 ~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
|+|+.|+. .+.+| .|.+||+.+++..... ..........|+|||+
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt--------------------------------~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT--------------------------------NHPAIDTEPFWGKDGR 299 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeEEcc--------------------------------cCCCCcCCeEECCCCC
Confidence 99998864 44455 5778888776421110 0112234678999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSL 311 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i 311 (519)
.++..+... ....++++++...........+ .......|+|+|..++.....+ ....|
T Consensus 300 ~i~f~s~~~-------g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~-------------~~~~l 357 (430)
T PRK00178 300 TLYFTSDRG-------GKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQD-------------GNFHV 357 (430)
T ss_pred EEEEEECCC-------CCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccC-------------CceEE
Confidence 988765432 1146778887544322222222 2334578999996653222111 11268
Q ss_pred EEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC-C--cEEEEEecC
Q 010051 312 YIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD-G--YCTLVEFEN 361 (519)
Q Consensus 312 ~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g--~i~vwd~~~ 361 (519)
.+||+.+++... +.. ........|+|||++|+..+.+ | .|.++++..
T Consensus 358 ~~~dl~tg~~~~-lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 358 AAQDLQRGSVRI-LTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEECCCCCEEE-ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 899998876533 322 2223356899999998877654 3 356666643
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7e-12 Score=118.59 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=130.3
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
.|.++|.... ..+.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+......|+
T Consensus 199 ~l~i~d~dG~-------~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGY-------NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCC-------CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeEC
Confidence 5666665433 122334466788899999999998876543 369999998876533 22222334578999
Q ss_pred CCCCeEEE-eeCCCe--EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 155 PLSKYVAS-LSSDRT--CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 155 ~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
|+|+.|+. .+.+|. |.++|+.+++..... .........+|+|||+
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt--------------------------------~~~~~~~~p~wSpDG~ 318 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTRIT--------------------------------RHRAIDTEPSWHPDGK 318 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEECc--------------------------------cCCCCccceEECCCCC
Confidence 99998865 455665 667777665421110 1112344689999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC--
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN-- 309 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~-- 309 (519)
+|+..+... ....++++++...........+ .......|+|||+.++. +...++
T Consensus 319 ~I~f~s~~~-------g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~~l~~---------------~~~~~g~~ 374 (448)
T PRK04792 319 SLIFTSERG-------GKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDGRSMIM---------------VNRTNGKF 374 (448)
T ss_pred EEEEEECCC-------CCceEEEEECCCCCEEEEecCC--CCCcCeeECCCCCEEEE---------------EEecCCce
Confidence 998876432 1146777787644322222222 22345789999965432 222222
Q ss_pred eEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC-Cc--EEEEEec
Q 010051 310 SLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD-GY--CTLVEFE 360 (519)
Q Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~--i~vwd~~ 360 (519)
.|.++|+.+++... +.. . .......|+|||++|+..+.+ |. +.+++.+
T Consensus 375 ~I~~~dl~~g~~~~-lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 375 NIARQDLETGAMQV-LTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEECCCCCeEE-ccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 57778888776433 322 1 122345899999988776544 33 6666664
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=8.9e-13 Score=110.52 Aligned_cols=264 Identities=13% Similarity=0.169 Sum_probs=160.8
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCcc-ccccc--------cccccccccccCcceeEEEEccC-------
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEK-QKKIP--------TASYQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~-~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~------- 75 (519)
-.+-|.++.|..+|.+||+|..+|.|.++.-..... ...+. ...+...+ .-...|+.+.|.++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl-eieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL-EIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh-hhhhhhhhceecCCCCccEEE
Confidence 346789999999999999999999999996543321 11110 00111111 12244566666554
Q ss_pred ----CCeEEEEEcccCCCcc---------------cce--------------eeec-cccCCCCeEEEEEcCCCCEEEEE
Q 010051 76 ----GGELIIWKLHTTETGQ---------------AWK--------------VLKN-LSFHRKDVLDLQWSTDGAFLLSG 121 (519)
Q Consensus 76 ----~~~i~vw~~~~~~~~~---------------~~~--------------~~~~-~~~~~~~v~~~~~s~~~~~l~~~ 121 (519)
+.+|++|.+....... .++ +.+. -.+|+..|+++.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 6899999886442211 000 0011 12488889999999999988877
Q ss_pred eCCCeEEEEEcCCCce---EEEeccc-----ccCeEEEEEcCC-CCeEEEeeCCCeEEEEecCCCCccccccccceeeEE
Q 010051 122 SVDNSCIIWDVNKGSV---LQILDAH-----FHYVQGVAWDPL-SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHV 192 (519)
Q Consensus 122 ~~dg~i~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 192 (519)
.|=.|.+|+++--.. +.-++.+ ..-|++..|+|. .+.|+..+..|+|++.|++....-..... .
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK------l 255 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK------L 255 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh------h
Confidence 478899999874322 1122222 346888999985 56778888899999999996432100000 0
Q ss_pred EeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCC
Q 010051 193 ITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASK 272 (519)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 272 (519)
+ ........ .-.....-..|..+.|+++|+++++-.- ..+.+||+.-..+++.+.+-|..
T Consensus 256 f--------Eepedp~~-rsffseiIsSISDvKFs~sGryilsRDy-----------ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 256 F--------EEPEDPSS-RSFFSEIISSISDVKFSHSGRYILSRDY-----------LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred h--------ccccCCcc-hhhHHHHhhhhhceEEccCCcEEEEecc-----------ceeEEEeccccCCcceEEeehHh
Confidence 0 00000000 0000112245778999999999997433 58999999766677766655531
Q ss_pred ------------C---eEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 273 ------------P---VVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 273 ------------~---v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
. -..++|+-++ ..+++|+..+..++|++..|
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~----------------~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGND----------------SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCc----------------ceEecccccceEEEecCCCC
Confidence 1 2346677666 45677777777888875544
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=2.2e-12 Score=122.72 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=107.3
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCC---CcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC--
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGAD---YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG-- 77 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 77 (519)
+...+....+...+.+.+|||||++||.+... ..|++||+.+++... +..+...+..++|+|++.
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------eecCCCCccceEECCCCCEE
Confidence 34445556677789999999999999877643 479999998875432 122334445567777753
Q ss_pred ----------eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCceEEEeccc
Q 010051 78 ----------ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD-N--SCIIWDVNKGSVLQILDAH 144 (519)
Q Consensus 78 ----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~h 144 (519)
.|++|++.++. ...+..+........|+|||++|+..+.. + .|+++|+.+++.. .+..+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~ 320 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR 320 (417)
T ss_pred EEEECCCCCccEEEEECCCCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC
Confidence 35556665431 22333344445678999999988876543 2 6888898777643 44445
Q ss_pred ccCeEEEEEcCCCCeEEEeeCCC---eEEEEecCCC
Q 010051 145 FHYVQGVAWDPLSKYVASLSSDR---TCRIYANRPT 177 (519)
Q Consensus 145 ~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 177 (519)
...+..+.|+|++++|+.++.++ .|.+||+.++
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 56677889999999998888775 7888888764
No 247
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=5.5e-13 Score=116.91 Aligned_cols=295 Identities=15% Similarity=0.140 Sum_probs=201.5
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cccccCeEEEEEcCC--CCeEEEeeCCCeEE
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL-DAHFHYVQGVAWDPL--SKYVASLSSDRTCR 170 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~ 170 (519)
.....|..|.+.|..+.|+..|..|++|+.|..|.+||...++....+ .+|...|....|-|. ...+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345567789999999999999999999999999999999998876665 578888888888874 45799999999999
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESIN 250 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 250 (519)
+=.+..... .........|.+.|..++.-|+..+-+..++.. +
T Consensus 213 ~s~i~~t~~----------------------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD---------~ 255 (559)
T KOG1334|consen 213 VSEILETGY----------------------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED---------A 255 (559)
T ss_pred eeeeccccc----------------------------eecceecccccCccceeeecCCCCCcccccccc---------c
Confidence 876654321 111233346778899999999876655544432 4
Q ss_pred eEEEEeccCCCcc--cccCCCCCC---CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC-----
Q 010051 251 SAYIFSRKDLSRP--ALQLPGASK---PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP----- 320 (519)
Q Consensus 251 ~i~i~~~~~~~~~--~~~~~~~~~---~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~----- 320 (519)
.+.-+|++..... +..-..+.. ....++..|... ..+++++.|-.+++||.+.-.
T Consensus 256 ~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt---------------~~faVgG~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 256 VVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT---------------NEFAVGGSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred ceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc---------------cccccCChhhhhhhhcccchhhcccc
Confidence 6666777643211 111122222 456788888664 246677777789999976422
Q ss_pred -ceEEEec-----cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccce-----------eeecCCcccccCCCCc
Q 010051 321 -PIAILAG-----LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIP-----------ISLSGNKVSKDENKSP 383 (519)
Q Consensus 321 -~~~~~~~-----~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 383 (519)
.+..+.. ...-.|++++|+.++.-|.++-.|-.|+++.-..+....+ ....||.+ ...|-.
T Consensus 321 ~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN--~~TVKg 398 (559)
T KOG1334|consen 321 GVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN--SRTVKG 398 (559)
T ss_pred chhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc--ccccce
Confidence 1222222 1245699999998877676667788899995443332111 11345543 334555
Q ss_pred cc-ccCCccEEEeecCCcee-eecCCCCC----------ccccccccCCCceEEeccccceeeeecccccc
Q 010051 384 LV-TKSEDMIIEASTNDKLV-TAETKEPD----------KRKTEAETKDDETAINGSIAAESRLIEPERNE 442 (519)
Q Consensus 384 ~~-~s~~~~~l~~~~~d~~i-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (519)
+- |-|...++++|++-|-| +|+..... .....+..+-.+.+.+...+..+++|.|..++
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 54 56788999999987777 88776532 33344556777788888999999999885544
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.1e-12 Score=120.11 Aligned_cols=216 Identities=17% Similarity=0.175 Sum_probs=129.9
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcC-C--CcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC-----
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGA-D--YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG----- 77 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 77 (519)
.+....+...+.+..|||||+.|+..+. + ..|++||+.+++.... ..........+|+|++.
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l----------t~~~g~~~~~~wSPDG~~La~~ 279 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV----------TSFPGINGAPRFSPDGKKLALV 279 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe----------cCCCCCcCCeeECCCCCEEEEE
Confidence 3444556678889999999999887643 2 2588889887764221 11112223456777653
Q ss_pred -------eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCCceEEEecccccC
Q 010051 78 -------ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-D--NSCIIWDVNKGSVLQILDAHFHY 147 (519)
Q Consensus 78 -------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~h~~~ 147 (519)
.|.++|+.++ ....+..+.......+|+|||++|+..+. + ..|+++|+.+++... +......
T Consensus 280 ~~~~g~~~Iy~~dl~tg-------~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~ 351 (448)
T PRK04792 280 LSKDGQPEIYVVDIATK-------ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ 351 (448)
T ss_pred EeCCCCeEEEEEECCCC-------CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC
Confidence 3555566544 22334445556678899999998876654 3 357778887776543 2222223
Q ss_pred eEEEEEcCCCCeEEEeeC-CC--eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEE
Q 010051 148 VQGVAWDPLSKYVASLSS-DR--TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRL 224 (519)
Q Consensus 148 v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 224 (519)
.....|+|+|++|+..+. ++ .|.++|+.+++..... .. ......
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt------------------------------~~---~~d~~p 398 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT------------------------------ST---RLDESP 398 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc------------------------------CC---CCCCCc
Confidence 345789999999877655 34 3455666655321100 00 011235
Q ss_pred EEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcC
Q 010051 225 AWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 225 ~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp 281 (519)
.|+|+|+.|+..+.... ...+++++.. +.....+..+.+.+...+|+|
T Consensus 399 s~spdG~~I~~~~~~~g-------~~~l~~~~~~--G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQG-------KQVLAAVSID--GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred eECCCCCEEEEEEecCC-------ceEEEEEECC--CCceEECcCCCCCcCCCccCC
Confidence 79999999988665421 1356777764 333444555555667778877
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.2e-11 Score=109.04 Aligned_cols=269 Identities=17% Similarity=0.219 Sum_probs=175.1
Q ss_pred CEEEEEEecCCCEEEEEc-----CC-----CcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------C
Q 010051 15 PVLTLDFHPISGLLATGG-----AD-----YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------G 76 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~-----~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~ 76 (519)
.++++.|||-|.+|.+-- .+ -.+.+|+++++.....+.. .... -.++.|+.| +
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~--------k~Q~-~W~~qfs~dEsl~arlv~ 145 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQK--------KMQN-GWVPQFSIDESLAARLVS 145 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheeh--------hhhc-Ccccccccchhhhhhhhc
Confidence 789999999999987631 12 3477999998544333211 0111 157788887 4
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCC--EEEE-----EeCCCeEEEEEcCCCceEEEec---cccc
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGA--FLLS-----GSVDNSCIIWDVNKGSVLQILD---AHFH 146 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~-----~~~dg~i~vwd~~~~~~~~~~~---~h~~ 146 (519)
+.+++|++..-.. ....+ |...|+.+.+||.+. ++|+ .+.-+.|++|...-......+. -...
T Consensus 146 nev~f~~~~~f~~-----~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 146 NEVQFYDLGSFKT-----IQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA 218 (566)
T ss_pred ceEEEEecCCccc-----eeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence 8899999876321 12222 678899999999643 4443 3455689999876322111110 0112
Q ss_pred CeEEEEEcCCCCeEEE-ee--CC---------CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeec
Q 010051 147 YVQGVAWDPLSKYVAS-LS--SD---------RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHD 214 (519)
Q Consensus 147 ~v~~~~~~~~~~~l~~-~~--~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (519)
.-..+.|++-|.-|++ ++ -| .++.+.++.... + .-.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----------~----------------------~V~ 266 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----------V----------------------SVP 266 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----------E----------------------EEe
Confidence 2346788877764432 22 12 245555554211 0 011
Q ss_pred CCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCc
Q 010051 215 ETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGF 294 (519)
Q Consensus 215 ~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~ 294 (519)
....++|.++.|+|+|+-++++.+ .+...+.|||++. .++..+ ..++-+++.|+|.|.++
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyG--------fMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii-------- 326 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYG--------FMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNII-------- 326 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEe--------cccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEE--------
Confidence 123578999999999999988653 4557899999863 333333 46788899999999554
Q ss_pred ccccceEEEEEec---CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEecCC
Q 010051 295 FKLPYRLIFAIAT---LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQ------DGYCTLVEFEND 362 (519)
Q Consensus 295 ~~~~~~~~~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~------dg~i~vwd~~~~ 362 (519)
+.++. .|.+.|||+.+.+++..+.. ..-+-+.|+|||++|+|++. |+.++||++...
T Consensus 327 --------~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 327 --------LLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred --------EEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 33333 38999999999888888876 34566899999999999864 688999998765
No 250
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.5e-11 Score=109.78 Aligned_cols=289 Identities=19% Similarity=0.250 Sum_probs=182.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEcC-----------CCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC---
Q 010051 11 HDTKPVLTLDFHPISGLLATGGA-----------DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG--- 76 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 76 (519)
.| ..|.-+.|||+.+||+|-+. ...+.|||+.+|...+.++.... ....-..+.||-+|
T Consensus 248 ~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 248 YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------PYLKWPIFRWSHDDKYF 320 (698)
T ss_pred cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------CccccceEEeccCCcee
Confidence 35 45899999999999998653 25799999999998887754211 11111245566664
Q ss_pred -----CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceEEEeccccc
Q 010051 77 -----GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-----DNSCIIWDVNKGSVLQILDAHFH 146 (519)
Q Consensus 77 -----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~h~~ 146 (519)
..|.||+..+- ..+..-.-.-..|....|+|.++.||.-.. -..+.+-.+.+++.++.-..|.-
T Consensus 321 Arm~~~sisIyEtpsf------~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 321 ARMTGNSISIYETPSF------MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred EEeccceEEEEecCce------eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 56777776432 222221224567899999999888875432 23577777878877776665543
Q ss_pred CeEEEEEcCCCCeEEEeeC----------CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCC
Q 010051 147 YVQGVAWDPLSKYVASLSS----------DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDET 216 (519)
Q Consensus 147 ~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (519)
.=..+-|-.+|.+|+.--. -..+.|+.++.... ......
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-------------------------------pve~ve 443 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-------------------------------PVEVVE 443 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-------------------------------Cceeee
Confidence 3345667777888764321 11233444433221 111123
Q ss_pred CcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccC-CCcccccCCCCCCCeEEEEEcCCcccccccCCCCcc
Q 010051 217 LPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKD-LSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFF 295 (519)
Q Consensus 217 ~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~ 295 (519)
+...|...+|-|.|..+++-++... ..++.+|.... ...+.....-.....+.+.|+|.|+.++.+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~-------k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva------ 510 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTV-------KNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVA------ 510 (698)
T ss_pred cchheeeeeeccCCCeEEEEEcccc-------ccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEE------
Confidence 4456778999999999888766432 35788888773 333322222233667899999999765322
Q ss_pred cccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeC------CCcEEEEEecCCcc
Q 010051 296 KLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQ------DGYCTLVEFENDEL 364 (519)
Q Consensus 296 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~------dg~i~vwd~~~~~~ 364 (519)
..++..|.+.++|+....+..+-...| ...+.+.|.|.|+|+++++. |..-++|++....+
T Consensus 511 -------~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 511 -------ALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred -------EecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 223456899999988543333322213 35688999999999999875 44567888776543
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=4.6e-11 Score=105.76 Aligned_cols=297 Identities=20% Similarity=0.220 Sum_probs=189.3
Q ss_pred CCEEEEEEecCCCEEEEEcCCC---------------cEEEEEecCCccccccccccccccccccCccee-EEEEccC--
Q 010051 14 KPVLTLDFHPISGLLATGGADY---------------DIKIWLINSGEKQKKIPTASYQNSLSYHGSAIN-ILRFSPC-- 75 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~-- 75 (519)
..|.-+.|||.++||.+-+..+ .+.|||+.+|..+..+...... .-.. -+.|+.+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-------~~~Wp~~k~s~~D~ 144 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-------YLGWPVLKFSIDDK 144 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-------ccccceeeeeecch
Confidence 5699999999999999865433 4999999999987765432211 1122 4666666
Q ss_pred ------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC--CEEEE-----EeCCCeEEEEEcCCCceEEEec
Q 010051 76 ------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG--AFLLS-----GSVDNSCIIWDVNKGSVLQILD 142 (519)
Q Consensus 76 ------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~vwd~~~~~~~~~~~ 142 (519)
+..+.|+++ +..-.. .....+ ....|....|+|.+ ..|+. .+..+++++|.+..+..+..-.
T Consensus 145 y~ARvv~~sl~i~e~-t~n~~~--~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~ 219 (561)
T COG5354 145 YVARVVGSSLYIHEI-TDNIEE--HPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN 219 (561)
T ss_pred hhhhhccCeEEEEec-CCcccc--Cchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence 478889997 321110 111222 23668889999964 34443 4567899999998776654433
Q ss_pred ccccCeEEEEEcCCCCeEEEeeC-----------CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCcccccee
Q 010051 143 AHFHYVQGVAWDPLSKYVASLSS-----------DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHL 211 (519)
Q Consensus 143 ~h~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (519)
-....=..+.|.+.|++|++--. ...+.++++...... +
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~------------------------------V 269 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP------------------------------V 269 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc------------------------------e
Confidence 22233356889999988764321 234555555432110 0
Q ss_pred eecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCC
Q 010051 212 FHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNS 291 (519)
Q Consensus 212 ~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 291 (519)
. ....++|...+|.|.++.+++.++- ....+.++|++.. ..+......-+.+.|+|.+++
T Consensus 270 -~-~~~~~pVhdf~W~p~S~~F~vi~g~--------~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~------ 329 (561)
T COG5354 270 -E-KDLKDPVHDFTWEPLSSRFAVISGY--------MPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERY------ 329 (561)
T ss_pred -e-ccccccceeeeecccCCceeEEecc--------cccceeecccccc----eEEecCCcccccccccCcccE------
Confidence 0 0335778899999999999887643 2346777877643 223334456677889998844
Q ss_pred CCcccccceEEEEEecC---CeEEEEeCCCCCceE-EEeccccccEEEEEEcCCCCEEEEEe------CCCcEEEEEecC
Q 010051 292 AGFFKLPYRLIFAIATL---NSLYIYDTESVPPIA-ILAGLHYAAITDIAWSNNARYLALSS------QDGYCTLVEFEN 361 (519)
Q Consensus 292 ~g~~~~~~~~~~~~~~d---~~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~~------~dg~i~vwd~~~ 361 (519)
++.++.+ |.|.+||......+. .+.+ ...+-+.|+|||+++.+.. .|..|.||++..
T Consensus 330 ----------il~agF~nl~gni~i~~~~~rf~~~~~~~~---~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 330 ----------ILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ----------EEEecCCccccceEEeccCCceEEEEEeec---CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 4444433 789999988665544 4544 3455678999999988764 478899999976
Q ss_pred CcccceeeecCCcccccCCCCcccccCCccEEEeecCC
Q 010051 362 DELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 399 (519)
...- ....+.|.|.+++..+.+..
T Consensus 397 ~~~f--------------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 397 AKVF--------------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred chhh--------------hhhhccccCCcccceeeccC
Confidence 5332 33445666666666555544
No 252
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.9e-13 Score=118.94 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=129.7
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cccccCeEEEEEcC--CCCeEEEeeCCCeEE
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL-DAHFHYVQGVAWDP--LSKYVASLSSDRTCR 170 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~ 170 (519)
.....+.||.+-|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345678899999999999999999999999999999999888877766 68999999999988 456789999999999
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC-CeEEEecCCcceeeeeccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG-SFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~~~~~ 249 (519)
+||+...+....... .........-|...|..++..|++ ..+.+++.+
T Consensus 121 lfdl~~~~~~~~d~~---------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasED---------- 169 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHG---------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASED---------- 169 (758)
T ss_pred EEecccccccccccC---------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCC----------
Confidence 999986443221111 111111222345667788888888 455555555
Q ss_pred ceEEEEeccCCCcccccC---------CCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC
Q 010051 250 NSAYIFSRKDLSRPALQL---------PGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE 317 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~---------~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~ 317 (519)
+.++-||+++...+.... ...--...++..+|... .+++.|+.|--.++||.+
T Consensus 170 GtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp---------------~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 170 GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP---------------YYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC---------------ceEEecCCCchhhhhhhh
Confidence 799999998744322211 11223456788888654 457888888899999964
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=6.2e-10 Score=94.99 Aligned_cols=286 Identities=13% Similarity=0.142 Sum_probs=174.0
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCC--CceEE--EecccccCe
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD---NSCIIWDVNK--GSVLQ--ILDAHFHYV 148 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~--~~~~~--~~~~h~~~v 148 (519)
+.-|++|++.+..... ....+-.+...++-|+|+|+.++|+++..+ |.|..|.++. |++.. .......+-
T Consensus 15 s~gI~v~~ld~~~g~l---~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGEL---SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCccccc---chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 5678889887543221 122233467789999999999999988654 6777777654 55422 111122334
Q ss_pred EEEEEcCCCCeEEEeeC-CCeEEEEecCCCC-ccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEE
Q 010051 149 QGVAWDPLSKYVASLSS-DRTCRIYANRPTK-SKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAW 226 (519)
Q Consensus 149 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (519)
+.+++++++++++++.. -|.|.++-++... ..... ..+...+ .. -+..+....+....+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-------~~~~h~g----------~~--p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVV-------QVVKHTG----------SG--PHERQESPHVHSANF 152 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccce-------eeeecCC----------CC--CCccccCCccceeee
Confidence 78999999999988876 5889999886632 11110 0000000 00 001111223567899
Q ss_pred ccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccc--cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEE
Q 010051 227 SPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL--QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA 304 (519)
Q Consensus 227 sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~ 304 (519)
.|++++|+++.-.. ..+.+|++.++..... ........-..|.|+|++++ .+.
T Consensus 153 tP~~~~l~v~DLG~---------Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~----------------aY~ 207 (346)
T COG2706 153 TPDGRYLVVPDLGT---------DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY----------------AYL 207 (346)
T ss_pred CCCCCEEEEeecCC---------ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE----------------EEE
Confidence 99999999876432 4888999875432111 11133456788999999954 444
Q ss_pred Ee-cCCeEEEEeCCCC-CceEEEec------c--ccccEEEEEEcCCCCEEEEEeCC-CcEEEEEecCCcccceeeecCC
Q 010051 305 IA-TLNSLYIYDTESV-PPIAILAG------L--HYAAITDIAWSNNARYLALSSQD-GYCTLVEFENDELGIPISLSGN 373 (519)
Q Consensus 305 ~~-~d~~i~vwd~~~~-~~~~~~~~------~--~~~~i~~~~~s~~g~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~ 373 (519)
.+ -+++|.+|..... ..+..+.. . -.....++..++||++|.++..- ..|.+|.+....- .+.+.+.
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--~L~~~~~ 285 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--KLELVGI 285 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC--EEEEEEE
Confidence 43 4688999988763 22222221 0 13457789999999999987532 4788888875422 1222222
Q ss_pred cccccCCCCcccccCCccEEEeecC--CceeeecCCCCC
Q 010051 374 KVSKDENKSPLVTKSEDMIIEASTN--DKLVTAETKEPD 410 (519)
Q Consensus 374 ~~~~~~~~~~~~~s~~~~~l~~~~~--d~~i~~~~~~~~ 410 (519)
..........+.++++|.+|+++.. |...+.....++
T Consensus 286 ~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 286 TPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred eccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 2223344678899999999988874 444455554444
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=1.8e-10 Score=102.40 Aligned_cols=264 Identities=11% Similarity=0.045 Sum_probs=157.0
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceEEEecccc-
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV----------DNSCIIWDVNKGSVLQILDAHF- 145 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~- 145 (519)
+.|.+.|..+. +.+..+..-..+ ..+ +||||+.|+.+.. +..|.+||..+++.+..+..-.
T Consensus 27 ~~v~ViD~~~~------~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAG------RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCC------EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 78999998876 556655533222 234 9999998887765 7899999999999988776421
Q ss_pred ------cCeEEEEEcCCCCeEEEee-C-CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCcccccee------
Q 010051 146 ------HYVQGVAWDPLSKYVASLS-S-DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHL------ 211 (519)
Q Consensus 146 ------~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 211 (519)
.....++++|+|++|++.. . +..+.+.|+.+++.......+. |...+..........+.+.....
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCC
Confidence 2234789999999998766 3 6899999999988655444433 33333321111110000000000
Q ss_pred ----eecCCC--c--cee-eEEEEcc-CCCeEEEecCCcceeeeecccceEEEEeccCCC----cccccCCC-------C
Q 010051 212 ----FHDETL--P--SFF-RRLAWSP-DGSFLLVPAGSYKISSMSESINSAYIFSRKDLS----RPALQLPG-------A 270 (519)
Q Consensus 212 ----~~~~~~--~--~~i-~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~-------~ 270 (519)
...... . .++ ..-.|++ +|++++++.. +.+++.|+.... .....+.. .
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-----------CeEEEEecCCCcceecceeeeccccccccccC
Confidence 000000 0 000 0113344 7777776544 578888754322 11111110 1
Q ss_pred CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCC-EEEEEe
Q 010051 271 SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNAR-YLALSS 349 (519)
Q Consensus 271 ~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~ 349 (519)
.....-++++|+++.+......+... .+ -...+.|.++|..+++.+..+.. ...+..++++||++ +|++.+
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~---th---k~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKW---TH---KTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccc---cc---cCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeC
Confidence 22334488888875432110000000 00 01225899999999999999885 56799999999999 777666
Q ss_pred -CCCcEEEEEecCCccccee
Q 010051 350 -QDGYCTLVEFENDELGIPI 368 (519)
Q Consensus 350 -~dg~i~vwd~~~~~~~~~~ 368 (519)
.++.|.++|..+++....+
T Consensus 319 ~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 319 TGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCcEEEEECcCCeEEeee
Confidence 5788999999988655544
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.2e-11 Score=114.18 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=109.8
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCC---ceEEEecccccCeEEEEEcCCCCeEEEee-CCCeEEEEecC
Q 010051 105 DVLDLQWSTDGAFLLSGSV-----DNSCIIWDVNKG---SVLQILDAHFHYVQGVAWDPLSKYVASLS-SDRTCRIYANR 175 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 175 (519)
.....+|||||+.|+..+. +-.+.+|++..+ ........+.......+|+|||+.|+..+ .+|...+|.+.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3456799999988886553 223444777653 33333333333456789999999887665 46655565432
Q ss_pred CCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEE
Q 010051 176 PTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIF 255 (519)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~ 255 (519)
...... ... .+ ......+....|||||++|+....... ...+++|
T Consensus 312 ~~~~g~-------~~~-------------------~l--t~~~~~~~~p~wSPDG~~Laf~~~~~g-------~~~I~v~ 356 (428)
T PRK01029 312 IDPEGQ-------SPR-------------------LL--TKKYRNSSCPAWSPDGKKIAFCSVIKG-------VRQICVY 356 (428)
T ss_pred Cccccc-------ceE-------------------Ee--ccCCCCccceeECCCCCEEEEEEcCCC-------CcEEEEE
Confidence 210000 000 00 011233457899999999998764321 2478999
Q ss_pred eccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEE
Q 010051 256 SRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITD 335 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~ 335 (519)
|+..... ..+......+....|+|||+.++.... ......|+++|+.+++...... ..+.+..
T Consensus 357 dl~~g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~-------------~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~ 419 (428)
T PRK01029 357 DLATGRD--YQLTTSPENKESPSWAIDSLHLVYSAG-------------NSNESELYLISLITKKTRKIVI--GSGEKRF 419 (428)
T ss_pred ECCCCCe--EEccCCCCCccceEECCCCCEEEEEEC-------------CCCCceEEEEECCCCCEEEeec--CCCcccC
Confidence 9865432 233333345677999999966532111 1123579999998877655444 3556778
Q ss_pred EEEcCCC
Q 010051 336 IAWSNNA 342 (519)
Q Consensus 336 ~~~s~~g 342 (519)
.+|+|-.
T Consensus 420 p~Ws~~~ 426 (428)
T PRK01029 420 PSWGAFP 426 (428)
T ss_pred ceecCCC
Confidence 8998854
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=4.6e-10 Score=102.88 Aligned_cols=250 Identities=14% Similarity=0.181 Sum_probs=151.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCC--ce--EEEecccccCeEEEEEcCCCCeEEEeeC-CCeEEEEe
Q 010051 103 RKDVLDLQWSTDGAFLLSGSV----DNSCIIWDVNKG--SV--LQILDAHFHYVQGVAWDPLSKYVASLSS-DRTCRIYA 173 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~--~~--~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 173 (519)
......++++|++++|+++.. ++.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345667899999999999876 568999998764 32 2333323345578999999999988874 89999999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEE
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAY 253 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~ 253 (519)
+.......... ..+...+. ......+......++.|+|+|+++++..-.. ..|+
T Consensus 116 l~~~g~l~~~~------~~~~~~g~-----------g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~---------D~v~ 169 (345)
T PF10282_consen 116 LDDDGSLGEVV------QTVRHEGS-----------GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA---------DRVY 169 (345)
T ss_dssp ECTTSEEEEEE------EEEESEEE-----------ESSTTTTSSTCEEEEEE-TTSSEEEEEETTT---------TEEE
T ss_pred ccCCcccceee------eecccCCC-----------CCcccccccccceeEEECCCCCEEEEEecCC---------CEEE
Confidence 98742111000 00000000 0000112234466899999999998865332 5888
Q ss_pred EEeccCCCcccc----cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC--CCC--ceEEE
Q 010051 254 IFSRKDLSRPAL----QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE--SVP--PIAIL 325 (519)
Q Consensus 254 i~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~--~~~--~~~~~ 325 (519)
+|++......+. ...........+.|+|+++++ .++...++.|.+|++. ++. .+..+
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~---------------Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA---------------YVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE---------------EEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE---------------EEecCCCCcEEEEeecccCCceeEEEEe
Confidence 898865442111 112344567889999998543 3444456889999887 332 22222
Q ss_pred ecc---c--cccEEEEEEcCCCCEEEEEeC-CCcEEEEEecC--CcccceeeecCCcccccCCCCcccccCCccEEEeec
Q 010051 326 AGL---H--YAAITDIAWSNNARYLALSSQ-DGYCTLVEFEN--DELGIPISLSGNKVSKDENKSPLVTKSEDMIIEAST 397 (519)
Q Consensus 326 ~~~---~--~~~i~~~~~s~~g~~l~~~~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 397 (519)
... . ......+.++|||++|+++.. .+.|.+|+++. +.+...-..+ ........+.++|+|++|+++.
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~----~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP----TGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE----ESSSSEEEEEE-TTSSEEEEEE
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe----CCCCCccEEEEeCCCCEEEEEe
Confidence 210 1 125788999999999887764 57899999943 3332221111 1123457899999999998776
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=1e-11 Score=104.28 Aligned_cols=274 Identities=10% Similarity=0.116 Sum_probs=168.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eEEEecccc------------cCeEEEEEcCCCC--eEEE
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS-----VLQILDAHF------------HYVQGVAWDPLSK--YVAS 162 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~--~l~~ 162 (519)
...-|.++.|..+|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568899999999999999999999999865432 223344453 3578899987655 5777
Q ss_pred eeCCCeEEEEecCCCCcccc-cccccee----eEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEec
Q 010051 163 LSSDRTCRIYANRPTKSKGV-EKMNYVC----QHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPA 237 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 237 (519)
.+.|.+|++|.+........ ..+.... ...+.......................|...|.+++++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 88899999999876543320 0000000 000000000000000011111223345778899999999999988754
Q ss_pred CCcceeeeecccceEEEEeccCCCccccc--CCCCC-----CCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCe
Q 010051 238 GSYKISSMSESINSAYIFSRKDLSRPALQ--LPGAS-----KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNS 310 (519)
Q Consensus 238 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~-----~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~ 310 (519)
. -.|.+|++.-....... +..+. .-|++..|+|..- +.++-.+..|+
T Consensus 184 d-----------LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c---------------n~f~YSSSKGt 237 (433)
T KOG1354|consen 184 D-----------LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC---------------NVFVYSSSKGT 237 (433)
T ss_pred c-----------eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc---------------cEEEEecCCCc
Confidence 3 37888887654433222 22222 3578888999642 45777778899
Q ss_pred EEEEeCCCCCceE----EEec-----------cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC-cccceeeecCCc
Q 010051 311 LYIYDTESVPPIA----ILAG-----------LHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND-ELGIPISLSGNK 374 (519)
Q Consensus 311 i~vwd~~~~~~~~----~~~~-----------~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~ 374 (519)
|++.|++...+.. .+.. .--..|.++.|+++|+|+++-+. -+|++||+... +....+.+...-
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 9999998432111 1110 01256889999999999997542 68999999643 222333332221
Q ss_pred c------cccC---CCCcccccCCccEEEeecCCcee
Q 010051 375 V------SKDE---NKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 375 ~------~~~~---~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
. .... .-..++|+.++.++++|+-...+
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 1 1112 23458899999999999977776
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.5e-11 Score=108.03 Aligned_cols=267 Identities=14% Similarity=0.109 Sum_probs=159.8
Q ss_pred CCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEe-------
Q 010051 102 HRKDVLDLQWSTDGAFLL-SGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA------- 173 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd------- 173 (519)
+....+.|..+|||+|++ +|..--.|++||+.+-.+...-......|.-.-++.|-..++..-.|.+|-+-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 677788999999999865 666778999999976544322111122333333343433344444455554421
Q ss_pred cCCCCccccccc-cceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceE
Q 010051 174 NRPTKSKGVEKM-NYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSA 252 (519)
Q Consensus 174 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i 252 (519)
++-.+...-..+ .+.|...+...+..+.-........+-......+.++++..++-..+|++|+.+ +.+
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~----------g~V 199 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED----------GVV 199 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccC----------ceE
Confidence 221111111111 112222222222221111111111111222234678899999999999988877 688
Q ss_pred EEEeccCCCccc-----ccCCCCCC-----CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCce
Q 010051 253 YIFSRKDLSRPA-----LQLPGASK-----PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPI 322 (519)
Q Consensus 253 ~i~~~~~~~~~~-----~~~~~~~~-----~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 322 (519)
..||.+.....- ..+..|.+ .|+++.|+.+|- .+.+|...|.+.|||+++.+++
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL----------------~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL----------------HVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCce----------------eEEeeccCCcEEEEEcccCCce
Confidence 899987544321 11222333 499999999884 4666777779999999998887
Q ss_pred EEEeccccccEEEEEEcCCC--CEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCc
Q 010051 323 AILAGLHYAAITDIAWSNNA--RYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 323 ~~~~~~~~~~i~~~~~s~~g--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 400 (519)
..-......+|..+.|.+.+ ..|++. ....++|||-.+++....+. ....+..+++-|++.++.++-+..
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-------ccCCcCceeeecCCceEEEecCCC
Confidence 66543345689999998764 445543 34678999988875433222 124588999999999999888766
Q ss_pred ee
Q 010051 401 LV 402 (519)
Q Consensus 401 ~i 402 (519)
.+
T Consensus 336 ~m 337 (703)
T KOG2321|consen 336 KM 337 (703)
T ss_pred cc
Confidence 55
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.44 E-value=9e-11 Score=103.05 Aligned_cols=96 Identities=18% Similarity=0.310 Sum_probs=79.1
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 155 (519)
+..|-|+|..++ ....+...-+.|.++..+++|++++.+.....|.+.|+.+|+....-+...+-|+.+.|+|
T Consensus 381 gD~l~iyd~~~~-------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 381 GDKLGIYDKDGG-------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred CceEEEEecCCc-------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence 347777777665 3445555678899999999999999999999999999999987665566678899999999
Q ss_pred CCCeEEEeeCCC----eEEEEecCCCC
Q 010051 156 LSKYVASLSSDR----TCRIYANRPTK 178 (519)
Q Consensus 156 ~~~~l~~~~~dg----~i~iwd~~~~~ 178 (519)
++++||.+--+| .|+++|+.+++
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCe
Confidence 999999877665 68999998876
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=4.6e-11 Score=114.85 Aligned_cols=259 Identities=12% Similarity=0.131 Sum_probs=175.8
Q ss_pred cCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 74 PCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 74 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
..+..|.+||+..+...........+..|...-.-.. .+.+++++..-+.+..-+... +....+ ...|....+
T Consensus 23 g~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l---~~~~~v~~~~~~~v~~~~~~~-~~~~~~---s~wi~g~~l 95 (967)
T KOG0974|consen 23 GSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL---LSGKIVTCAKSDEVYVKEASN-QIIERF---SDWIFGAKL 95 (967)
T ss_pred cCCCceEEeeCCchhHhhhhhhhccccccccccccee---ccceEEEEEeecceeecchhh-hhhhhc---cccccccch
Confidence 3467899999988754443344444444511111111 133455555444444433221 112222 233444555
Q ss_pred cCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeE
Q 010051 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFL 233 (519)
Q Consensus 154 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 233 (519)
.-+...++....+..+.+||...........-...+.. ....-+.++++.-++
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l---------------------------~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL---------------------------YSSLIIGDSAEELYI 148 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE---------------------------EeEEEEeccCcEEEE
Confidence 56677888888999999999887653322222211111 111234456666677
Q ss_pred EEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE
Q 010051 234 LVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI 313 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v 313 (519)
++++.- +.+.+|.......+. .+.+|.+.+..+.|+-+| +++++.+.|.++++
T Consensus 149 ~~gsv~----------~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg----------------~~i~s~SdDRsiRl 201 (967)
T KOG0974|consen 149 ASGSVF----------GEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDG----------------RYIASVSDDRSIRL 201 (967)
T ss_pred Eecccc----------ccEEEEeccccCCcc-eecccCCceEEEEEccCC----------------cEEEEEecCcceee
Confidence 776655 689999987544444 688999999999999998 77899999999999
Q ss_pred EeCCCCCceE-EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccE
Q 010051 314 YDTESVPPIA-ILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMI 392 (519)
Q Consensus 314 wd~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 392 (519)
|++.+.+... ...+ |...|..++|.|+ .+++++.|.++++|+.+...+. ...+|. ...++.++..++...
T Consensus 202 W~i~s~~~~~~~~fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~---~y~~h~---g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 202 WPIDSREVLGCTGFG-HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE---VYDEHS---GKGIWKIAVPIGVII 272 (967)
T ss_pred eecccccccCccccc-ccceeEEEEeccc--eeEEeccceEEEEEecccceeh---hhhhhh---hcceeEEEEcCCceE
Confidence 9999988776 5556 9999999999999 9999999999999987765443 334444 578899999999999
Q ss_pred EEeecCCcee
Q 010051 393 IEASTNDKLV 402 (519)
Q Consensus 393 l~~~~~d~~i 402 (519)
++++++|+.+
T Consensus 273 ~vT~g~Ds~l 282 (967)
T KOG0974|consen 273 KVTGGNDSTL 282 (967)
T ss_pred EEeeccCcch
Confidence 9999999888
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=4.3e-11 Score=100.66 Aligned_cols=238 Identities=13% Similarity=0.171 Sum_probs=159.1
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEe-cCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcc
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLI-NSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~ 85 (519)
+...||.+.|+....-|-..-+++.+.|.+++||-- +.++--
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w------------------------------------- 60 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW------------------------------------- 60 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-------------------------------------
Confidence 445678888888888887778888888888888832 222210
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC----CCceEEEecccccCeEEEEEcCCCCeEE
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN----KGSVLQILDAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 161 (519)
..+. ..-..+++++.+.++...|++|-..|++.-+.+. .....+.+..|...|..+.|+-...+++
T Consensus 61 --------psI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~ 130 (404)
T KOG1409|consen 61 --------PSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVL 130 (404)
T ss_pred --------chhh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEE
Confidence 1111 1135678999999999999999999999888764 3445667788999999999998888999
Q ss_pred EeeCCCeEEEEecCCCCcccccc-------ccceeeEEEeccCcc---cccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 162 SLSSDRTCRIYANRPTKSKGVEK-------MNYVCQHVITKAGQH---STDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
+.+.|..+.---.+.+....... ++......+...... ...........+.....+...+.+++|.|...
T Consensus 131 s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~ 210 (404)
T KOG1409|consen 131 STGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR 210 (404)
T ss_pred EeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc
Confidence 99988776544444333221111 111111111111000 01111223334555667889999999999999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSL 311 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i 311 (519)
.|+++..+ ..+.+||+.........+.+|...|..+.+-+.- +.+++++.||.|
T Consensus 211 ~LfSg~~d----------~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t----------------~~l~S~~edg~i 264 (404)
T KOG1409|consen 211 LLFSGASD----------HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT----------------RQLISCGEDGGI 264 (404)
T ss_pred EEEecccc----------CceEEEeccCCcceeeeeccchhhhhhhhhhhhh----------------eeeeeccCCCeE
Confidence 99998887 6899999987767777788898888888776655 446666666677
Q ss_pred EEEeCC
Q 010051 312 YIYDTE 317 (519)
Q Consensus 312 ~vwd~~ 317 (519)
.+|+++
T Consensus 265 ~~w~mn 270 (404)
T KOG1409|consen 265 VVWNMN 270 (404)
T ss_pred EEEecc
Confidence 777653
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=6.9e-11 Score=113.63 Aligned_cols=280 Identities=14% Similarity=0.091 Sum_probs=187.6
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC--
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET-- 89 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~-- 89 (519)
|-+++++..+-. +||.+|.. -.|.+||...+..+..+... ..+..|...-.... .+...+|-......
T Consensus 6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~---~~~~~H~~e~~~~l----~~~~~v~~~~~~~v~~ 75 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQS---KILEVHRGEGKVKL----LSGKIVTCAKSDEVYV 75 (967)
T ss_pred ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhh---ccccccccccccee----ccceEEEEEeecceee
Confidence 345556666543 57766643 45999999988776654321 22333411000000 01111221111100
Q ss_pred -cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccccc----CeEEEEEcCCCCeEEEee
Q 010051 90 -GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFH----YVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 90 -~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~~~~ 164 (519)
...++.... -...+....+.-+.+.++.++.++.+.+||...+..+..+..... ...-+.++++.-++++|+
T Consensus 76 ~~~~~~~~~~---~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 76 KEASNQIIER---FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cchhhhhhhh---ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 000111122 233444455666778899999999999999988776665543221 122233456677899999
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.-+.|.+|+....+.. .....|.+.|.++.|+-||+++++.+.+
T Consensus 153 v~~~iivW~~~~dn~p-------------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdD----- 196 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKP-------------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDD----- 196 (967)
T ss_pred ccccEEEEeccccCCc-------------------------------ceecccCCceEEEEEccCCcEEEEEecC-----
Confidence 9999999998733211 1334677889999999999999998887
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
..+++|++.+.........+|...+..+.|.|. .+++++.|-+.++|+.. +..+..
T Consensus 197 -----RsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n------------------~i~t~gedctcrvW~~~-~~~l~~ 252 (967)
T KOG0974|consen 197 -----RSIRLWPIDSREVLGCTGFGHSARVWACCFLPN------------------RIITVGEDCTCRVWGVN-GTQLEV 252 (967)
T ss_pred -----cceeeeecccccccCcccccccceeEEEEeccc------------------eeEEeccceEEEEEecc-cceehh
Confidence 799999998876666677899999999999994 58999999999999755 555557
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
+.......|..++..++...++|++.||.+++|++.....
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 7772346799999999999999999999999999876543
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.6e-10 Score=103.08 Aligned_cols=179 Identities=14% Similarity=0.192 Sum_probs=134.3
Q ss_pred ecCCCEEEEEcCCCcEEEEEecCCcccccccccccccccc-----------------------ccCcceeEEEEccCCCe
Q 010051 22 HPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLS-----------------------YHGSAINILRFSPCGGE 78 (519)
Q Consensus 22 sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~ 78 (519)
.|-+.|+|....||.++||+...++....+........-. .....-..++.+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999999988766553211100000 00011112222223588
Q ss_pred EEEEEcccCCCcccceeeecc--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC
Q 010051 79 LIIWKLHTTETGQAWKVLKNL--SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL 156 (519)
Q Consensus 79 i~vw~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 156 (519)
|.+|++..+ +....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.+......+.+++.+||
T Consensus 82 v~~ys~~~g------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 82 VLLYSVAGG------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred EEEEEecCC------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 888988766 343333 469999999999999999999999999999999999999999999899999999999
Q ss_pred CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC-----CC
Q 010051 157 SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD-----GS 231 (519)
Q Consensus 157 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-----g~ 231 (519)
+..+++++ +.|++||+.+.+. +.....|.+.|++++|-.+ |.
T Consensus 156 ~~~l~~as--~~ik~~~~~~kev-------------------------------v~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEV-------------------------------VITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred CCEEEecc--ceEEEEEccCceE-------------------------------EEEecCCCcceEEEEEEEeccccccc
Confidence 99999886 7899999998752 3445578899999999877 78
Q ss_pred eEEEecCC
Q 010051 232 FLLVPAGS 239 (519)
Q Consensus 232 ~l~~~~~~ 239 (519)
+++++...
T Consensus 203 ~vLssa~~ 210 (541)
T KOG4547|consen 203 YVLSSAAA 210 (541)
T ss_pred eeeecccc
Confidence 88776543
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=1.3e-09 Score=89.90 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=135.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--EEEecccccCeEEEEEcC-CCCeEEEeeCCCeEEEEecCCCCccc
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV--LQILDAHFHYVQGVAWDP-LSKYVASLSSDRTCRIYANRPTKSKG 181 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 181 (519)
...++.|++.+..++++-.+|.+.+-+...... ++.++.|.-.++...|+. +.+.+++|+.|+.+..||++..+.
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-- 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-- 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--
Confidence 356788999999999999999999776655544 347899999999999974 456889999999999999994321
Q ss_pred cccccceeeEEEeccCcccccCCccccceeee-cCCCcceeeEEEEcc-CCCeEEEecCCcceeeeecccceEEEEeccC
Q 010051 182 VEKMNYVCQHVITKAGQHSTDDSKSAKNHLFH-DETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSESINSAYIFSRKD 259 (519)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~ 259 (519)
.+++ ...|...|.++.-+| .+.++++|+-+ ..+++||.++
T Consensus 201 ----------------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD----------e~i~~~DtRn 242 (339)
T KOG0280|consen 201 ----------------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD----------ECIRVLDTRN 242 (339)
T ss_pred ----------------------------eeeecceeeecceEEEecCCCCCceEEEeccc----------cceeeeehhc
Confidence 1122 223456677777776 57788887776 5899999998
Q ss_pred CCcccccCCCCCCCeEEEEEcCCcc--cccccCCCCcccccceEEEEEecCCeEEEEeCCCC--C---ceEEEecccccc
Q 010051 260 LSRPALQLPGASKPVVAVRFCPLAF--NLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV--P---PIAILAGLHYAA 332 (519)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~--~---~~~~~~~~~~~~ 332 (519)
..+++..-.- .+.|+.+.++|.-. .|++.-.+| .+|-+...+ + .+..... |.+-
T Consensus 243 m~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-----------------~ki~~~~~~~~e~~~~~~s~~~-hdSl 303 (339)
T KOG0280|consen 243 MGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-----------------AKILDSSDKVLEFQIVLPSDKI-HDSL 303 (339)
T ss_pred ccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-----------------ceEEEecccccchheeeecccc-ccce
Confidence 8877665432 37899999999654 233333333 444444432 2 2233344 7777
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEE-EEEecC
Q 010051 333 ITDIAWSNNARYLALSS-QDGYCT-LVEFEN 361 (519)
Q Consensus 333 i~~~~~s~~g~~l~~~~-~dg~i~-vwd~~~ 361 (519)
+..-.|.....+|||++ .|..++ +|-..+
T Consensus 304 ~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 304 CYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred eeccccccccceeeeeeccccceeeeeeecc
Confidence 77777855556788865 456544 665433
No 265
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.7e-10 Score=106.11 Aligned_cols=147 Identities=21% Similarity=0.298 Sum_probs=113.4
Q ss_pred CEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------------------
Q 010051 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC------------------- 75 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------- 75 (519)
.-.++.|+|.| ++|.|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---------ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---------IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---------cccCccceeEEEeccCCCchhccCccccceeEEec
Confidence 35678899866 7777764 5688999887775554 4458888999999875
Q ss_pred --CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCceEEEecccccCeE
Q 010051 76 --GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWST---DG-AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQ 149 (519)
Q Consensus 76 --~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 149 (519)
.|.|.+||.... ..+..+..|..++..++|-+ +. ..|++-....+|.+|+..+|+.+..+........
T Consensus 86 D~~GrIil~d~~~~------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 86 DISGRIILVDFVLA------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred cccCcEEEEEehhh------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 389999999877 55666777899999999976 33 4566666678999999999999888776667788
Q ss_pred EEEEcC-CCCeEEEeeCCCeEEEEecCCCC
Q 010051 150 GVAWDP-LSKYVASLSSDRTCRIYANRPTK 178 (519)
Q Consensus 150 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 178 (519)
|+.+.| +.+.|...+..|.+.+.+.-...
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence 899998 56677777778888877765543
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=4.5e-11 Score=100.53 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=121.3
Q ss_pred eEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-CCeEEEEEc
Q 010051 6 LQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-GGELIIWKL 84 (519)
Q Consensus 6 ~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~i~vw~~ 84 (519)
++....|...|..+-|+-...++++.+.|..+.---.+.+..+-.+..... -....-.+. .+|-.+ .+.|.+..+
T Consensus 107 ~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~d~~-~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 107 LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQFDAL-YAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCceeeE-EEEecccccceEEEEE
Confidence 344567999999999999889999999988665444455544332211111 111111222 333322 466665555
Q ss_pred ccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eEEEecccccCeEEEEEcCCCCeEEEe
Q 010051 85 HTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS-VLQILDAHFHYVQGVAWDPLSKYVASL 163 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~ 163 (519)
.... ...+.++.+|.+.+++++|.+....|++|..|..+.+||+.-++ ....+.+|...|..+...+.-+.++++
T Consensus 183 ~~~~----~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~ 258 (404)
T KOG1409|consen 183 EQNG----CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC 258 (404)
T ss_pred eecC----CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec
Confidence 4332 25678889999999999999999999999999999999997554 345678899999999988888899999
Q ss_pred eCCCeEEEEecCCCCcccc
Q 010051 164 SSDRTCRIYANRPTKSKGV 182 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~ 182 (519)
+.||.|.+|++........
T Consensus 259 ~edg~i~~w~mn~~r~etp 277 (404)
T KOG1409|consen 259 GEDGGIVVWNMNVKRVETP 277 (404)
T ss_pred cCCCeEEEEeccceeecCc
Confidence 9999999999987654443
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=3.7e-08 Score=87.05 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=108.6
Q ss_pred CcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCccc
Q 010051 217 LPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFK 296 (519)
Q Consensus 217 ~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~ 296 (519)
+...|.-..+..++.-++.+..++ ..+-+||.... .+..+...-+.|.++..+|+|+.
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dg---------D~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~----------- 415 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDG---------DKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKK----------- 415 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCC---------ceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcE-----------
Confidence 345577777777777777777664 37888888643 34556667788999999999954
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCC----cEEEEEecCCcccceeeecC
Q 010051 297 LPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDG----YCTLVEFENDELGIPISLSG 372 (519)
Q Consensus 297 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~ 372 (519)
++.+.....|.+.|+.++.....-+. ..+-|+.+.|+|++++||-+--+| .|+++|+.+++.-...+..+
T Consensus 416 -----~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta 489 (668)
T COG4946 416 -----VVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA 489 (668)
T ss_pred -----EEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc
Confidence 55555556899999999986655554 667899999999999999887665 68999999886544443333
Q ss_pred CcccccCCCCcccccCCccEEEeecC
Q 010051 373 NKVSKDENKSPLVTKSEDMIIEASTN 398 (519)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~~~l~~~~~ 398 (519)
+. .+.+|.||+++|..-+.
T Consensus 490 ~D-------fsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YD-------FSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cc-------cCcccCCCCcEEEEEec
Confidence 33 56789999998876653
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1e-09 Score=99.33 Aligned_cols=190 Identities=16% Similarity=0.284 Sum_probs=133.7
Q ss_pred ceeEEEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEc------C--------------CCCEEEEEeCCC
Q 010051 66 AINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWS------T--------------DGAFLLSGSVDN 125 (519)
Q Consensus 66 ~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------~--------------~~~~l~~~~~dg 125 (519)
.+...+.++.||.+++|+...++..+.+.....+ .+..++..|. | |...++-|...|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 3456788999999999999887544444443333 2334444442 1 334678888899
Q ss_pred eEEEEEcCCCceEEEec--ccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccC
Q 010051 126 SCIIWDVNKGSVLQILD--AHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDD 203 (519)
Q Consensus 126 ~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~------------------------- 135 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV------------------------- 135 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-------------------------
Confidence 99999999999887774 688999999999998999999999999999887653
Q ss_pred CccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCc
Q 010051 204 SKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLA 283 (519)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 283 (519)
.+++|... ...+.+++++|||
T Consensus 136 -----------------------------------------------~~~~~~~~------------~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 136 -----------------------------------------------IIRIWKEQ------------KPLVSSLCISPDG 156 (541)
T ss_pred -----------------------------------------------eeeeeccC------------CCccceEEEcCCC
Confidence 22223221 1234455666665
Q ss_pred ccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCC-----CCEEEE-EeCCCcEEEE
Q 010051 284 FNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNN-----ARYLAL-SSQDGYCTLV 357 (519)
Q Consensus 284 ~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~-~~~dg~i~vw 357 (519)
..+++++ +.|.+||+.+++.+..|.+ |.++|++++|..+ |.++++ ...+..+.+|
T Consensus 157 ~~l~~as------------------~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 157 KILLTAS------------------RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred CEEEecc------------------ceEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 4332222 3788888888888888888 8888888888776 555444 4555667888
Q ss_pred EecC
Q 010051 358 EFEN 361 (519)
Q Consensus 358 d~~~ 361 (519)
-+..
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 7765
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=1.4e-08 Score=90.48 Aligned_cols=260 Identities=12% Similarity=0.111 Sum_probs=139.8
Q ss_pred EecCCCEEEEEcC----------CCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCc
Q 010051 21 FHPISGLLATGGA----------DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETG 90 (519)
Q Consensus 21 ~sp~~~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~ 90 (519)
+|||++.|+++.. +..|.|||..+.+...+++.......+ .......++++|+|..+.+.+....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--~~~~~~~~~ls~dgk~l~V~n~~p~--- 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--VGTYPWMTSLTPDNKTLLFYQFSPS--- 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--ccCccceEEECCCCCEEEEecCCCC---
Confidence 9999998776654 788999999999998887643221111 1233456788888877777665422
Q ss_pred ccceeeeccccCCCCeEE-EEEcCCCCEEEEE--------eCCCeEEEEEcCC-CceE-EE---ecccccCe-EEEEEcC
Q 010051 91 QAWKVLKNLSFHRKDVLD-LQWSTDGAFLLSG--------SVDNSCIIWDVNK-GSVL-QI---LDAHFHYV-QGVAWDP 155 (519)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~--------~~dg~i~vwd~~~-~~~~-~~---~~~h~~~v-~~~~~~~ 155 (519)
..+..+.-....+.. +.. |++..++.. +.||......+.+ |+.. .. +.....++ ..-.|.+
T Consensus 128 ---~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~ 203 (352)
T TIGR02658 128 ---PAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN 203 (352)
T ss_pred ---CEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence 122222222222222 221 444444433 2344444333322 2211 11 11100000 0013445
Q ss_pred -CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEE
Q 010051 156 -LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLL 234 (519)
Q Consensus 156 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 234 (519)
+++++++... |.|.+.|+............. +... .....-.++.+.-++++|++++++
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~-----~~~~--------------~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA-----FTEA--------------EKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeee-----cccc--------------ccccccCCCcceeEEEcCCCCEEE
Confidence 7777766665 999999976654221111000 0000 000001223344599999999999
Q ss_pred EecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEe-cCCeEEE
Q 010051 235 VPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIA-TLNSLYI 313 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~-~d~~i~v 313 (519)
+..............+.+.++|..+.........+ ..+..++++||++. ++++.. .++.|.+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp---------------~lyvtn~~s~~VsV 326 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKP---------------LLYALSTGDKTLYI 326 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCe---------------EEEEeCCCCCcEEE
Confidence 85322111111222358999998765433333333 47889999999952 344333 5688999
Q ss_pred EeCCCCCceEEEe
Q 010051 314 YDTESVPPIAILA 326 (519)
Q Consensus 314 wd~~~~~~~~~~~ 326 (519)
+|+.+++.+..+.
T Consensus 327 iD~~t~k~i~~i~ 339 (352)
T TIGR02658 327 FDAETGKELSSVN 339 (352)
T ss_pred EECcCCeEEeeec
Confidence 9999999988874
No 270
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.26 E-value=3.6e-08 Score=81.89 Aligned_cols=214 Identities=16% Similarity=0.134 Sum_probs=118.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-------cccCeEEEEEcCC------CCeEEEeeCCCeEE
Q 010051 104 KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-------HFHYVQGVAWDPL------SKYVASLSSDRTCR 170 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~~------~~~l~~~~~dg~i~ 170 (519)
-.-+.++||||+..||.+...|+|+++|+.. ..+..+.. -..+|..+.|.+- ...|++...+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3457799999999999999999999999854 33333322 1246777777542 22467777788887
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESIN 250 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 250 (519)
-|-+..+.... +...+.+ -.....+..|.++.++|.-+.|++++....-. +
T Consensus 123 Sy~vs~gt~q~-----y~e~hsf------------------sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~------~ 173 (282)
T PF15492_consen 123 SYLVSVGTNQG-----YQENHSF------------------SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQD------G 173 (282)
T ss_pred eEEEEcccCCc-----ceeeEEE------------------EecccCCCceeEEEEcCCCCEEEEeccCCCCC------c
Confidence 77653321111 0111111 11123456789999999999888876542100 0
Q ss_pred eEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccc--cccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc
Q 010051 251 SAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNL--RESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL 328 (519)
Q Consensus 251 ~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l--~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 328 (519)
. -......+++-+.-.+..+. +....++ ..... .+..+|.+-+.+.... .+.
T Consensus 174 ~---------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~-------~~~~~---~~~~~~~~~~~~~fs~-~~~ 227 (282)
T PF15492_consen 174 M---------------SKASSCGLTAWRILSDSPYYKQVTSSEDD-------ITASS---KRRGLLRIPSFKFFSR-QGQ 227 (282)
T ss_pred c---------------ccccccCceEEEEcCCCCcEEEccccCcc-------ccccc---cccceeeccceeeeec-ccc
Confidence 0 00111112222111111110 0000000 00000 0122333322221111 111
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCC
Q 010051 329 HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGN 373 (519)
Q Consensus 329 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 373 (519)
....|..|..||||..||+...+|.|.+|++.+-.....+.....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 456799999999999999999999999999998777666655443
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.6e-08 Score=94.41 Aligned_cols=203 Identities=8% Similarity=0.006 Sum_probs=122.1
Q ss_pred CeEEEEEcCCCCE-EEEEeC---CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEe-eCC--CeEEEEecCCC
Q 010051 105 DVLDLQWSTDGAF-LLSGSV---DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL-SSD--RTCRIYANRPT 177 (519)
Q Consensus 105 ~v~~~~~s~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~ 177 (519)
......|+|||+. ++..+. +..|+++|+.+++...... ..+......|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999985 554443 3579999998887654433 44556678899999877543 333 45777777665
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEec
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSR 257 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~ 257 (519)
....+.. .........|+|||+.|+..+... ....|+++++
T Consensus 268 ~~~~LT~--------------------------------~~~~d~~p~~SPDG~~I~F~Sdr~-------g~~~Iy~~dl 308 (419)
T PRK04043 268 TLTQITN--------------------------------YPGIDVNGNFVEDDKRIVFVSDRL-------GYPNIFMKKL 308 (419)
T ss_pred cEEEccc--------------------------------CCCccCccEECCCCCEEEEEECCC-------CCceEEEEEC
Confidence 4221111 011122468999999999877542 1247888888
Q ss_pred cCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEE
Q 010051 258 KDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIA 337 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 337 (519)
...........+. ....|+|+|+.++.......- . .+.....|++.|+.++... .+.. . .......
T Consensus 309 ~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~----~---~~~~~~~I~v~d~~~g~~~-~LT~-~-~~~~~p~ 374 (419)
T PRK04043 309 NSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNN----E---FGKNTFNLYLISTNSDYIR-RLTA-N-GVNQFPR 374 (419)
T ss_pred CCCCeEeCccCCC----cCceECCCCCEEEEEEcCCCc----c---cCCCCcEEEEEECCCCCeE-ECCC-C-CCcCCeE
Confidence 6543322222222 124899999776533221100 0 0001147889999887653 3332 2 2334689
Q ss_pred EcCCCCEEEEEeCC-Cc--EEEEEecC
Q 010051 338 WSNNARYLALSSQD-GY--CTLVEFEN 361 (519)
Q Consensus 338 ~s~~g~~l~~~~~d-g~--i~vwd~~~ 361 (519)
|+|||+.|+..+.+ +. +.+.+++.
T Consensus 375 ~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 99999988776544 33 55555544
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.8e-09 Score=98.50 Aligned_cols=186 Identities=11% Similarity=0.072 Sum_probs=112.7
Q ss_pred CCEEEEEEecCCCE-EEEEcC---CCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC------------
Q 010051 14 KPVLTLDFHPISGL-LATGGA---DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG------------ 77 (519)
Q Consensus 14 ~~V~~~~~sp~~~~-la~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------ 77 (519)
+.+....|||||+. ++..+. ...|+++|+.+++... +....+......|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------lt~~~g~~~~~~~SPDG~~la~~~~~~g~~ 257 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------IASSQGMLVVSDVSKDGSKLLLTMAPKGQP 257 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------EecCCCcEEeeEECCCCCEEEEEEccCCCc
Confidence 37889999999984 654333 3568889998876543 222344455667888764
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD-N--SCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
.|.++++..+ ....+..+........|+|||+.|+..+.. + .|++.|+.+++..+.... .. ....|+
T Consensus 258 ~Iy~~dl~~g-------~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~S 327 (419)
T PRK04043 258 DIYLYDTNTK-------TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVS 327 (419)
T ss_pred EEEEEECCCC-------cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceEC
Confidence 3444555443 122333333334556899999988876642 2 788899988776443322 11 134899
Q ss_pred CCCCeEEEeeCC---------CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEE
Q 010051 155 PLSKYVASLSSD---------RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLA 225 (519)
Q Consensus 155 ~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (519)
|+|++|+..+.. ..|.+.|+.++....+.. ........
T Consensus 328 PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---------------------------------~~~~~~p~ 374 (419)
T PRK04043 328 TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---------------------------------NGVNQFPR 374 (419)
T ss_pred CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC---------------------------------CCCcCCeE
Confidence 999998776643 256667776654211100 01122588
Q ss_pred EccCCCeEEEecCCcceeeeecccceEEEEeccC
Q 010051 226 WSPDGSFLLVPAGSYKISSMSESINSAYIFSRKD 259 (519)
Q Consensus 226 ~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~ 259 (519)
|+|||+.++....... ...+.++++..
T Consensus 375 ~SPDG~~I~f~~~~~~-------~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYLGN-------QSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEccCC-------cEEEEEEecCC
Confidence 9999999988764321 13466666643
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=2.3e-08 Score=101.74 Aligned_cols=333 Identities=17% Similarity=0.245 Sum_probs=191.6
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEE----EecCCccccccccccccccccccCcceeEEEEccCCC---------eE
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIW----LINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG---------EL 79 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~i 79 (519)
.+.|.++.|-++...|+.+..+|.|.+. +...... .....-..+|.+++||||+. +|
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~----------E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI----------EIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee----------EEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 4679999999999988888899999998 4433321 12334678899999999953 33
Q ss_pred EEEE----c------ccC-------------C-----Cccccee--------------eeccccCCCCeEEEEEcCCCCE
Q 010051 80 IIWK----L------HTT-------------E-----TGQAWKV--------------LKNLSFHRKDVLDLQWSTDGAF 117 (519)
Q Consensus 80 ~vw~----~------~~~-------------~-----~~~~~~~--------------~~~~~~~~~~v~~~~~s~~~~~ 117 (519)
.+.+ . ... + .+...+. ...+. +...-..++|-.||.+
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 3321 1 000 0 0000010 01122 3445678999999999
Q ss_pred EEEEeC---C---CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC---CCeEEEEecCCCCccccccccce
Q 010051 118 LLSGSV---D---NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS---DRTCRIYANRPTKSKGVEKMNYV 188 (519)
Q Consensus 118 l~~~~~---d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~ 188 (519)
+|+.+. . ..|+||+.+ |.+...-..-.+--.+++|.|.|++|++.-. ...|.+|.-...+... ..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge-F~---- 297 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE-FT---- 297 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee-Ee----
Confidence 998764 2 589999964 6654443333333457899999999988764 3456666544432111 00
Q ss_pred eeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC---cccc
Q 010051 189 CQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS---RPAL 265 (519)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~ 265 (519)
+........|..+.|++|+..|++...+ .|.+|-..+.. +...
T Consensus 298 -----------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-----------~vqLWt~~NYHWYLKqei 343 (928)
T PF04762_consen 298 -----------------------LRFDPEEEKVIELAWNSDSEILAVWLED-----------RVQLWTRSNYHWYLKQEI 343 (928)
T ss_pred -----------------------cCCCCCCceeeEEEECCCCCEEEEEecC-----------CceEEEeeCCEEEEEEEE
Confidence 1111234567899999999999996644 58888776542 1111
Q ss_pred cCCCCCCCeEEEEEcCCccc-ccccCCCCcc-cccceEEEEEe------cCCeEEEEeCC--------CC---Cce--EE
Q 010051 266 QLPGASKPVVAVRFCPLAFN-LRESNSAGFF-KLPYRLIFAIA------TLNSLYIYDTE--------SV---PPI--AI 324 (519)
Q Consensus 266 ~~~~~~~~v~~~~~sp~~~~-l~~~~~~g~~-~~~~~~~~~~~------~d~~i~vwd~~--------~~---~~~--~~ 324 (519)
.+ .....+..+.|+|.... |.....+|.+ .....+-++.+ ..|.+.+-|-. .. .+. ..
T Consensus 344 ~~-~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 344 RF-SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred Ec-cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 12 22233455999996543 4333332322 11122222222 12334444422 11 111 22
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccc--------eeeec----CCcccccCCCCcccccCCccE
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGI--------PISLS----GNKVSKDENKSPLVTKSEDMI 392 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~----~~~~~~~~~~~~~~~s~~~~~ 392 (519)
+. ...+|.+++|++++..+++-..||.|.+|......... .+... .........+..++|..++..
T Consensus 423 l~--~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 423 LE--LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred Ec--CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence 22 35789999999999889999999999999966543221 11110 011122345667777777766
Q ss_pred EEeecCC
Q 010051 393 IEASTND 399 (519)
Q Consensus 393 l~~~~~d 399 (519)
++....+
T Consensus 501 ~~~~~~~ 507 (928)
T PF04762_consen 501 LVLSDSD 507 (928)
T ss_pred EEEEecC
Confidence 6555543
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=2.2e-10 Score=106.10 Aligned_cols=299 Identities=13% Similarity=0.141 Sum_probs=185.0
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccc-cc----cccccccccccCc-ceeEEEEccCCCeEEEEEcc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKK-IP----TASYQNSLSYHGS-AINILRFSPCGGELIIWKLH 85 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~-~~----~~~~~~~~~~~~~-~v~~~~~~~~~~~i~vw~~~ 85 (519)
-.+.+.++..+|.|+-+|.++.-| +.|-|+...-.... +. ....-.....|.. ....|.+++ ..-.+|++.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~--qkaiiwnlA 99 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN--QKAIIWNLA 99 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc--chhhhhhhh
Confidence 346788999999999999998877 66777654321111 10 0000111222222 223333333 344578876
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc-eEEEecccccCeEEEEEcCCCCeEEEe
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGS-VLQILDAHFHYVQGVAWDPLSKYVASL 163 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~ 163 (519)
..... ..-..+.+|...|+.+.|+|.. ..|++++.|..+..||+++.. .+..+..-......+.|+.....+++.
T Consensus 100 ~ss~~---aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 100 KSSSN---AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred cCCcc---ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 54322 3456678899999999999965 578999999999999998854 455555444566889998755556666
Q ss_pred eCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC-CeEEEecCCcce
Q 010051 164 SSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG-SFLLVPAGSYKI 242 (519)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~ 242 (519)
+....|++||++.+.... .....+-..++.+.|..-- ..+..++.+
T Consensus 177 shg~~i~vwd~r~gs~pl------------------------------~s~K~~vs~vn~~~fnr~~~s~~~s~~~d--- 223 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPL------------------------------CSLKGHVSSVNSIDFNRFKYSEIMSSSND--- 223 (1081)
T ss_pred ccCCceEEEeccCCCcce------------------------------EEecccceeeehHHHhhhhhhhhcccCCC---
Confidence 777889999999875221 1112233445556655422 223333333
Q ss_pred eeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC-CCc
Q 010051 243 SSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES-VPP 321 (519)
Q Consensus 243 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~-~~~ 321 (519)
+.+..|+................+|..-.|-|-|.-....-..|. +.+..--.++....|+..+ .++
T Consensus 224 -------~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~-----n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 224 -------GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG-----NMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred -------CceeeecccccccccceeccccCcceeccccccCceeEeccccCC-----eeeeeccccchhhhhccccCCcc
Confidence 689999987665544444455678888888887644332222221 1111112223333444443 468
Q ss_pred eEEEeccccccEEEEEEcCCC----------CEEEEEeCCCcEEEEEecCC
Q 010051 322 IAILAGLHYAAITDIAWSNNA----------RYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g----------~~l~~~~~dg~i~vwd~~~~ 362 (519)
+..|.+ |...|..+-|-..+ -.|+|-+.|..+++|-+.+.
T Consensus 292 Vh~F~G-H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 292 VHTFVG-HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eeeecC-cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 899999 99888777664322 26999999999999998753
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=7.4e-08 Score=100.16 Aligned_cols=218 Identities=12% Similarity=0.119 Sum_probs=131.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceEEEeccc-----------------ccCeEEEEEcC-CCCeEEEee
Q 010051 104 KDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNKGSVLQILDAH-----------------FHYVQGVAWDP-LSKYVASLS 164 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~~~~ 164 (519)
.....+++.++++.|+++.. .+.|+++|+.++.. ..+.+- -.....++++| ++..+++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 34578899988876666544 56789999876643 333110 01236789999 555667777
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.++.|++||...+... .+...+....... .. .....-.....++++|+|.+|+++....
T Consensus 703 ~~~~I~v~d~~~g~v~-----------~~~G~G~~~~~~g-----~~-~~~~~~~~P~GIavspdG~~LYVADs~n---- 761 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-----------VFSGDGYERNLNG-----SS-GTSTSFAQPSGISLSPDLKELYIADSES---- 761 (1057)
T ss_pred CCCeEEEEECCCCeEE-----------EEecCCccccCCC-----Cc-cccccccCccEEEEeCCCCEEEEEECCC----
Confidence 7899999998765321 1111110000000 00 0001113356799999999776654432
Q ss_pred eecccceEEEEeccCCCcccc------------cCCCC--------CCCeEEEEEcCCcccccccCCCCcccccceEEEE
Q 010051 245 MSESINSAYIFSRKDLSRPAL------------QLPGA--------SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFA 304 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~------------~~~~~--------~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~ 304 (519)
+.|++||+........ .+... -.....++++++| +.+++
T Consensus 762 -----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG----------------~LYVA 820 (1057)
T PLN02919 762 -----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG----------------QIYVA 820 (1057)
T ss_pred -----CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC----------------cEEEE
Confidence 6888888764321110 00000 0122456666665 45677
Q ss_pred EecCCeEEEEeCCCCCceEEEecc------------ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc
Q 010051 305 IATLNSLYIYDTESVPPIAILAGL------------HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 305 ~~~d~~i~vwd~~~~~~~~~~~~~------------~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
-..++.|++||..++......... .......++++++|+++++-+.++.|++||+.++..
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 777889999999877654332210 122567899999999988888999999999988765
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=2.4e-10 Score=115.87 Aligned_cols=199 Identities=11% Similarity=0.153 Sum_probs=145.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-cccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcc
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-HFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSK 180 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 180 (519)
+-..|.++.=+|...+.++|+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|.....-
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~-- 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP-- 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc--
Confidence 556788888888889999999999999999988887776642 33789999999999999999999999999876221
Q ss_pred ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCC
Q 010051 181 GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDL 260 (519)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~ 260 (519)
.+.+. -|......+.|-. ..+++++. +...+++.+||.--.
T Consensus 2285 ---~~s~q---------------------------chnk~~~Df~Fi~--s~~~tag~-------s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2285 ---YTSWQ---------------------------CHNKALSDFRFIG--SLLATAGR-------SSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ---eeccc---------------------------cCCccccceeeee--hhhhcccc-------CCCCCcccchhcccC
Confidence 11111 1222233344433 33343332 234468889997544
Q ss_pred CcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcC
Q 010051 261 SRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSN 340 (519)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~ 340 (519)
...-..-..|.+.+++++|-|.. ..+++|+.+|.|++||++..+....+.. +.
T Consensus 2326 ~~~s~v~~~H~~gaT~l~~~P~~----------------qllisggr~G~v~l~D~rqrql~h~~~~----------~~- 2378 (2439)
T KOG1064|consen 2326 PMNSLVHTCHDGGATVLAYAPKH----------------QLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD- 2378 (2439)
T ss_pred cccceeeeecCCCceEEEEcCcc----------------eEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-
Confidence 43333347899999999999987 6688888899999999998777655543 44
Q ss_pred CCCEEEEEeCCCcEEEEEecCCccccee
Q 010051 341 NARYLALSSQDGYCTLVEFENDELGIPI 368 (519)
Q Consensus 341 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~ 368 (519)
...++++++..|.++||++....+....
T Consensus 2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred hhheeeccCcccceEEEEccccchhhcC
Confidence 5568999999999999999876554443
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=7e-09 Score=96.14 Aligned_cols=238 Identities=14% Similarity=0.175 Sum_probs=160.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------------eEEEecccccCeEEEEEcCCCCeEEEeeCC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS---------------VLQILDAHFHYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 166 (519)
......|+.|+....++++|+.||.++|..+.+.. .-+.+.+|...|..+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34567899999999999999999999999876521 124678999999999999999999999999
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~ 246 (519)
|.|.+|-+-.+...... ......+-|.+++|+.+|..++....++.+..-.
T Consensus 93 GlIiVWmlykgsW~EEM-----------------------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEM-----------------------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred ceEEEEeeecccHHHHH-----------------------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 99999988765421100 0112235678999999999999988886554322
Q ss_pred cccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCC------
Q 010051 247 ESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVP------ 320 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~------ 320 (519)
-+.+ +||... +.+ .....+.|++|...+..+- .+|.+.+||.+..-
T Consensus 144 vdGN--RIwgKe--------Lkg--~~l~hv~ws~D~~~~Lf~~----------------ange~hlydnqgnF~~Kl~~ 195 (1189)
T KOG2041|consen 144 VDGN--RIWGKE--------LKG--QLLAHVLWSEDLEQALFKK----------------ANGETHLYDNQGNFERKLEK 195 (1189)
T ss_pred eccc--eecchh--------cch--heccceeecccHHHHHhhh----------------cCCcEEEecccccHHHhhhh
Confidence 2222 344332 111 1233689999986654443 44588999876431
Q ss_pred -ceEEEecc---ccccEEEEEEc--------CCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccC
Q 010051 321 -PIAILAGL---HYAAITDIAWS--------NNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKS 388 (519)
Q Consensus 321 -~~~~~~~~---~~~~i~~~~~s--------~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 388 (519)
+.....+. ....|..+.|. |+...|+++-..|.+.+..-.+......+.. ...+....|++
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-------gm~~vgakWnh 268 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-------GMKIVGAKWNH 268 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-------ccEeecceecC
Confidence 11111110 12235556664 4778899999999999887665532222221 23567789999
Q ss_pred CccEEEeecCCceee
Q 010051 389 EDMIIEASTNDKLVT 403 (519)
Q Consensus 389 ~~~~l~~~~~d~~i~ 403 (519)
+|..|+.++.+..-+
T Consensus 269 ~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 269 NGAVLAVCGNDSDAD 283 (1189)
T ss_pred CCcEEEEccCccccc
Confidence 999999998775543
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=4e-07 Score=79.58 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=111.5
Q ss_pred eEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceEEEecc-----cccCeEEEEEcCCCCeEEEeeCC--------CeEEE
Q 010051 106 VLDLQWS-TDGAFLLSGSVDNSCIIWDVNKGSVLQILDA-----HFHYVQGVAWDPLSKYVASLSSD--------RTCRI 171 (519)
Q Consensus 106 v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~~~~~d--------g~i~i 171 (519)
...+++. +++ .|+.+...+ +.++|+.+++....+.. .....+.+++.++|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 565 455555544 56669988865443332 33567889999999977765543 44666
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
++.. ++... . . ..-...+.++|+|+++.|+++.... +.
T Consensus 120 ~~~~-~~~~~----------~-------------------~---~~~~~pNGi~~s~dg~~lyv~ds~~---------~~ 157 (246)
T PF08450_consen 120 IDPD-GKVTV----------V-------------------A---DGLGFPNGIAFSPDGKTLYVADSFN---------GR 157 (246)
T ss_dssp EETT-SEEEE----------E-------------------E---EEESSEEEEEEETTSSEEEEEETTT---------TE
T ss_pred ECCC-CeEEE----------E-------------------e---cCcccccceEECCcchheeeccccc---------ce
Confidence 6655 22100 0 0 0013356899999999887654332 57
Q ss_pred EEEEeccCCCc------ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEE
Q 010051 252 AYIFSRKDLSR------PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAIL 325 (519)
Q Consensus 252 i~i~~~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 325 (519)
|+.|++..... .+..+....+..-.+++..+| ++.++....+.|.+++.. |+.+..+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G----------------~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG----------------NLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-----------------EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC----------------CEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 88888754332 111222222336677777776 556666678899999988 8888888
Q ss_pred eccccccEEEEEE-cCCCCEEEEEe
Q 010051 326 AGLHYAAITDIAW-SNNARYLALSS 349 (519)
Q Consensus 326 ~~~~~~~i~~~~~-s~~g~~l~~~~ 349 (519)
.. ....+++++| .++.+.|+..+
T Consensus 221 ~~-p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 221 EL-PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E--SSSSEEEEEEESTTSSEEEEEE
T ss_pred cC-CCCCEEEEEEECCCCCEEEEEe
Confidence 77 4468999999 46666555443
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=2.2e-07 Score=87.09 Aligned_cols=278 Identities=12% Similarity=0.067 Sum_probs=150.5
Q ss_pred CCCEEEEEcCCCcEEEEEecCCccccccccccccc-cccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccccC
Q 010051 24 ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQN-SLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFH 102 (519)
Q Consensus 24 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~ 102 (519)
.+..+++++.+|.|.-+|..+|+.+.......... ...... ..+.+...++.|..+|..+++ .+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~---~~v~v~~~~g~l~ald~~tG~------~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADG---GLVFVGTEKGEVIALDAEDGK------ELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcC---CEEEEEcCCCEEEEEECCCCc------EeeeeccC
Confidence 36688888889999999999998876554332211 011111 123344456888888887763 32222211
Q ss_pred CCCeEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCe-----EEEEEcCCCCeEEEeeCCCeEEEEecCC
Q 010051 103 RKDVLD-LQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYV-----QGVAWDPLSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 103 ~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 176 (519)
..+.+ ... .+..++.++.++.|+.||..+|+.+..+......+ ...... +..++.+..+|.+..+|+.+
T Consensus 135 -~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 135 -SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQT 209 (377)
T ss_pred -ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccC
Confidence 12211 111 34567778889999999999998877665432211 111121 34677788889999999988
Q ss_pred CCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEe
Q 010051 177 TKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFS 256 (519)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~ 256 (519)
++..-...... ..+.. . ...+. .......+ .+..+++++.+ +.++.||
T Consensus 210 G~~~W~~~~~~-------~~g~~------~-~~~~~------~~~~~p~~--~~~~vy~~~~~----------g~l~a~d 257 (377)
T TIGR03300 210 GQPLWEQRVAL-------PKGRT------E-LERLV------DVDGDPVV--DGGQVYAVSYQ----------GRVAALD 257 (377)
T ss_pred CCEeeeecccc-------CCCCC------c-hhhhh------ccCCccEE--ECCEEEEEEcC----------CEEEEEE
Confidence 75321110000 00000 0 00000 00001111 23455554444 4677777
Q ss_pred ccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEE
Q 010051 257 RKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDI 336 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~ 336 (519)
..+... .-... .. ....... . ...++.++.+|.|+.+|..+++.+..............
T Consensus 258 ~~tG~~-~W~~~-~~-~~~~p~~--~----------------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 258 LRSGRV-LWKRD-AS-SYQGPAV--D----------------DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCCCcE-EEeec-cC-CccCceE--e----------------CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 654321 11111 00 0000111 1 14677888899999999999987755432011222222
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEecCCcccceeee
Q 010051 337 AWSNNARYLALSSQDGYCTLVEFENDELGIPISL 370 (519)
Q Consensus 337 ~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 370 (519)
.. .+..|++++.+|.|+++|..+++....+.+
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 22 466888999999999999988876554443
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=9.6e-10 Score=111.71 Aligned_cols=205 Identities=12% Similarity=0.183 Sum_probs=151.2
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
...+|-..|.++.=+|...+.+||+.||.|++|....+.. |..|+..
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-------------------------------v~~~rt~-- 2249 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-------------------------------VVCFRTA-- 2249 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-------------------------------EEEeecc--
Confidence 3456667888888888888999999999999997764432 2233221
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEee---
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS--- 164 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--- 164 (519)
....|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|......+.|-. ..+++++
T Consensus 2250 --------------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2250 --------------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSS 2312 (2439)
T ss_pred --------------CcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCC
Confidence 23678899999999999999999999999985 667777889999999999974 6677765
Q ss_pred CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceee
Q 010051 165 SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISS 244 (519)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 244 (519)
.++.+.+||....... ..++ ..|.+.++++++-|.-+.+++|+.+
T Consensus 2313 d~~n~~lwDtl~~~~~-----------------------------s~v~-~~H~~gaT~l~~~P~~qllisggr~----- 2357 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMN-----------------------------SLVH-TCHDGGATVLAYAPKHQLLISGGRK----- 2357 (2439)
T ss_pred CCCcccchhcccCccc-----------------------------ceee-eecCCCceEEEEcCcceEEEecCCc-----
Confidence 3688999997543211 1111 3566778899999999999998877
Q ss_pred eecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 245 MSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 245 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
|.+++||++... ....+.. +. .. .++++++..|.|+||++.....+..
T Consensus 2358 -----G~v~l~D~rqrq-l~h~~~~---------~~-~~----------------~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2358 -----GEVCLFDIRQRQ-LRHTFQA---------LD-TR----------------EYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred -----CcEEEeehHHHH-HHHHhhh---------hh-hh----------------heeeccCcccceEEEEccccchhhc
Confidence 799999997532 1222221 22 11 5688888889999999998877777
Q ss_pred Eeccc
Q 010051 325 LAGLH 329 (519)
Q Consensus 325 ~~~~~ 329 (519)
+...|
T Consensus 2406 ~p~e~ 2410 (2439)
T KOG1064|consen 2406 FPSEH 2410 (2439)
T ss_pred Cchhh
Confidence 76533
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=5.8e-08 Score=79.39 Aligned_cols=237 Identities=14% Similarity=0.006 Sum_probs=148.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCce-EEEecccccCeEEEEEcCC-CCeEEEeeCCCeEEEEecCCCCccccccccceeeEE
Q 010051 115 GAFLLSGSVDNSCIIWDVNKGSV-LQILDAHFHYVQGVAWDPL-SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHV 192 (519)
Q Consensus 115 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 192 (519)
-.+||.|+..|...+|...+.+. ++....|...|+-+.=..+ .-.+..++.|.++++.++..+......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--------- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--------- 154 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence 35799999999999999986543 3444445444332211111 234667788989998888765322111
Q ss_pred EeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccccc--CCCC
Q 010051 193 ITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ--LPGA 270 (519)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~ 270 (519)
+... -.+.++++++|++++++.+.. ..|..|.+.+....... ....
T Consensus 155 --------------------h~~~--~~~ns~~~snd~~~~~~Vgds----------~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 155 --------------------HNQN--LTQNSLHYSNDPSWGSSVGDS----------RRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred --------------------eccc--cceeeeEEcCCCceEEEecCC----------CcceEEEeCCccceeeeeEeccc
Confidence 1111 125689999999999998776 57777777655432222 2233
Q ss_pred CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceE----EEeccccccEEEEEEcCCCC--E
Q 010051 271 SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIA----ILAGLHYAAITDIAWSNNAR--Y 344 (519)
Q Consensus 271 ~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~i~~~~~s~~g~--~ 344 (519)
...-.+..|+... ..++++..||++.|||++...... ..+..|.+.+..+.|++-|. +
T Consensus 203 ~D~gF~~S~s~~~----------------~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 203 SDHGFYNSFSEND----------------LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred CCCceeeeeccCc----------------ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE
Confidence 3444566676655 457888888999999998653322 22233889999999998774 4
Q ss_pred EEEEeCCCcEEEEEecCCcccceeeecCCcc--cccCCCCcccccCCccEEEeecCCceeeecCCC
Q 010051 345 LALSSQDGYCTLVEFENDELGIPISLSGNKV--SKDENKSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 345 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
|+..-.-+.+.|.|+++..-.+.+..+.... .....+....|+.++.-+.+...+....|....
T Consensus 267 Lf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 267 LFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence 5555555789999998876555554433321 112336666777777666666666555555443
No 282
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.06 E-value=4e-07 Score=78.31 Aligned_cols=253 Identities=12% Similarity=0.060 Sum_probs=144.1
Q ss_pred cccccCcceeEEEEccC-CCeEEEEEcccCCCcccceeeeccccCCCC--eEEEEEcCCCCEEEEEe-----CCCeEEEE
Q 010051 59 SLSYHGSAINILRFSPC-GGELIIWKLHTTETGQAWKVLKNLSFHRKD--VLDLQWSTDGAFLLSGS-----VDNSCIIW 130 (519)
Q Consensus 59 ~~~~~~~~v~~~~~~~~-~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~-----~dg~i~vw 130 (519)
.+..|...-..++|..- +..+.+||..++. ....+....+. .=.-+||+||++|++.- ..|.|-||
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~------~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQ------LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc------eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 34445555566777654 5677889998873 33332221111 11368999999999863 35899999
Q ss_pred EcC-CCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCc-cccccccceeeEEE-eccCcccccCCccc
Q 010051 131 DVN-KGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKS-KGVEKMNYVCQHVI-TKAGQHSTDDSKSA 207 (519)
Q Consensus 131 d~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 207 (519)
|.. +-+.+..+..|.-.-..+.+.||++.|+++. |-|.-- .+.++. .....+.... ..+ ...+ .
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~Th-pd~GR~kLNl~tM~psL-~~ld~~sG---------~ 149 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIETH-PDSGRAKLNLDTMQPSL-VYLDARSG---------A 149 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCccC-cccCceecChhhcCCce-EEEecCCC---------c
Confidence 998 5567788888877778899999998887663 212110 011110 0011111100 011 0101 0
Q ss_pred cceeeec--CCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcc----cccCCCCCCCeEEEEEcC
Q 010051 208 KNHLFHD--ETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRP----ALQLPGASKPVVAVRFCP 281 (519)
Q Consensus 208 ~~~~~~~--~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~v~~~~~sp 281 (519)
....+.. ..+...|+.+++.++|..++..-..+.. .....-+.++.....-.. ..........+-+|++++
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~---~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP---GDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEEecCCCC---CccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeC
Confidence 0111111 3355678999999999877765433211 111123444443321111 011123346788999999
Q ss_pred CcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010051 282 LAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGY 353 (519)
Q Consensus 282 ~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 353 (519)
++..++..+.. .+.+.+||..++..+....- ..+..++-.+++ ++++.+. |.
T Consensus 227 ~g~~ia~tsPr---------------Gg~~~~~d~~tg~~~~~~~l---~D~cGva~~~~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 227 DGRLIAVTSPR---------------GGRVAVWDAATGRLLGSVPL---PDACGVAPTDDG-FLVSSGQ-GQ 278 (305)
T ss_pred CCCEEEEECCC---------------CCEEEEEECCCCCEeecccc---CceeeeeecCCc-eEEeCCC-cc
Confidence 98655444443 47999999999998877654 457777877777 6665543 44
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=1.8e-07 Score=87.56 Aligned_cols=254 Identities=14% Similarity=0.034 Sum_probs=142.6
Q ss_pred CCCEEEEEcCCCcEEEEEecCCcccccccccccccc-ccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccccC
Q 010051 24 ISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNS-LSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFH 102 (519)
Q Consensus 24 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~ 102 (519)
++..+++++.++.++.+|..+|+.+........... .....+ .+.+...++.|..||..++. .+......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~---~v~v~~~~g~l~a~d~~tG~------~~W~~~~~ 174 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANG---LVVVRTNDGRLTALDAATGE------RLWTYSRV 174 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECC---EEEEECCCCeEEEEEcCCCc------eeeEEccC
Confidence 466788888899999999999987765543221110 000111 23344567889999998773 22222111
Q ss_pred CCCe-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccccc----C------e-EEEEEcCCCCeEEEeeCC
Q 010051 103 RKDV-----LDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFH----Y------V-QGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 103 ~~~v-----~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~----~------v-~~~~~~~~~~~l~~~~~d 166 (519)
...+ ...... +..++.+..++.+..+|+.+|+.+........ . + ....+ .+..+++++.+
T Consensus 175 ~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~ 250 (377)
T TIGR03300 175 TPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQ 250 (377)
T ss_pred CCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcC
Confidence 1110 111111 34677888889999999999987654321100 0 0 01111 25678888889
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeee
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMS 246 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~ 246 (519)
|.+..||..+++..-... ... ...+ ...+..+++++.+
T Consensus 251 g~l~a~d~~tG~~~W~~~--------------------------------~~~-~~~p--~~~~~~vyv~~~~------- 288 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRD--------------------------------ASS-YQGP--AVDDNRLYVTDAD------- 288 (377)
T ss_pred CEEEEEECCCCcEEEeec--------------------------------cCC-ccCc--eEeCCEEEEECCC-------
Confidence 999999998775211000 000 0011 1245566666555
Q ss_pred cccceEEEEeccCCCcccccCCCCCC-CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEE
Q 010051 247 ESINSAYIFSRKDLSRPALQLPGASK-PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAIL 325 (519)
Q Consensus 247 ~~~~~i~i~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 325 (519)
+.++.+|..+... +-....... ........ + ..+++++.+|.|+++|..+++.+..+
T Consensus 289 ---G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i~--g----------------~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 289 ---GVVVALDRRSGSE-LWKNDELKYRQLTAPAVV--G----------------GYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred ---CeEEEEECCCCcE-EEccccccCCccccCEEE--C----------------CEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 4666666644321 111100000 01111110 1 56888899999999999999999888
Q ss_pred eccccccE-EEEEEcCCCCEEEEEeCCCcEEEE
Q 010051 326 AGLHYAAI-TDIAWSNNARYLALSSQDGYCTLV 357 (519)
Q Consensus 326 ~~~~~~~i-~~~~~s~~g~~l~~~~~dg~i~vw 357 (519)
.. +...+ ....+. ++ .|+.++.||.|+.|
T Consensus 347 ~~-~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 347 KT-DGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred Ec-CCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 76 44333 233332 33 57788899998875
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.04 E-value=6.7e-07 Score=91.39 Aligned_cols=270 Identities=13% Similarity=0.145 Sum_probs=153.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEE----EcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIW----DVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
....|.++.|-++...|+.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+..+.++++.+.+-. .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 45789999999999999999999999999 554432 22333345789999999999999999989988876422 1
Q ss_pred Ccccccccc---cee-eEEEeccCc--ccccCCccc---------cce---eeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 178 KSKGVEKMN---YVC-QHVITKAGQ--HSTDDSKSA---------KNH---LFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 178 ~~~~~~~~~---~~~-~~~~~~~~~--~~~~~~~~~---------~~~---~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
.......+. ... ..+-..-|. ..+.+.... ... ..... ....-..++|-.||.++|+.+-+
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 111000000 000 000000000 000000000 000 00001 22344589999999999997642
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
.. ......+++|+... ........-.+--.+++|.|.|..+|+.... .....|.+|.-. |
T Consensus 231 ~~----~~~~R~iRVy~ReG--~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-------------~~~~~VvFfErN-G 290 (928)
T PF04762_consen 231 PE----TGSRRVIRVYSREG--ELQSTSEPVDGLEGALSWRPSGNLIASSQRL-------------PDRHDVVFFERN-G 290 (928)
T ss_pred cC----CCceeEEEEECCCc--eEEeccccCCCccCCccCCCCCCEEEEEEEc-------------CCCcEEEEEecC-C
Confidence 10 11236899999762 2222222222334578999999555433211 112467777743 4
Q ss_pred CceEEEec---cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCc-cEEEe
Q 010051 320 PPIAILAG---LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSED-MIIEA 395 (519)
Q Consensus 320 ~~~~~~~~---~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~ 395 (519)
-.-..|.- .....|..+.|++|+..||..-.|. |.+|-..+..+-....+.-.. ...+..+.|+|.. ..|..
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~---~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS---SESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC---CCCCCceEECCCCCCEEEE
Confidence 33333322 1456799999999999999977655 999999887532222222111 2234458888855 33444
Q ss_pred ecC
Q 010051 396 STN 398 (519)
Q Consensus 396 ~~~ 398 (519)
...
T Consensus 367 ~t~ 369 (928)
T PF04762_consen 367 LTS 369 (928)
T ss_pred Eec
Confidence 444
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.6e-09 Score=97.29 Aligned_cols=297 Identities=11% Similarity=0.059 Sum_probs=171.0
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEc
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKL 84 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~ 84 (519)
++.-+.||+..|..++--.+.+-+++++.|.+|++|.+.......
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~----------------------------------- 771 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI----------------------------------- 771 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-----------------------------------
Confidence 445668999999999888888899999999999999886432100
Q ss_pred ccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEec--ccccCeEEEEEcC--CCCeE
Q 010051 85 HTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILD--AHFHYVQGVAWDP--LSKYV 160 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~--~~~~l 160 (519)
..-.+..+++.|..+|..+.|-.+.++++++ ||-|.+||.--|+.+..+. ...+.+..+..-+ +...+
T Consensus 772 ------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~il 843 (1034)
T KOG4190|consen 772 ------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHIL 843 (1034)
T ss_pred ------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchhe
Confidence 0004566777899999999999888887765 7889999987777655331 1123333333333 33444
Q ss_pred E-EeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 161 A-SLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 161 ~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
+ .++...+++++|.+........+ . -........+++++..+.|++++++-..
T Consensus 844 iAgcsaeSTVKl~DaRsce~~~E~k--------V------------------cna~~Pna~~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 844 IAGCSAESTVKLFDARSCEWTCELK--------V------------------CNAPGPNALTRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred eeeccchhhheeeecccccceeeEE--------e------------------ccCCCCchheeEEEeccCcchhhHHhcC
Confidence 4 44778999999998875322111 1 1111223557789999999999997776
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEE-EeCCC
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYI-YDTES 318 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~v-wd~~~ 318 (519)
+.+.+.|.+++. .+.....-+-....++ .|.. ..++....|.++.+ |....
T Consensus 898 ----------Gci~~LDaR~G~-vINswrpmecdllqla-apsd----------------q~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 898 ----------GCIAILDARNGK-VINSWRPMECDLLQLA-APSD----------------QALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred ----------CcEEEEecCCCc-eeccCCcccchhhhhc-Cchh----------------HHHHhhcccceeEeeehhcC
Confidence 567777776542 1111111111111111 1222 23444455567777 87776
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecC-CcccccCCCCcccccCCccEEEeec
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSG-NKVSKDENKSPLVTKSEDMIIEAST 397 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~ 397 (519)
+......+. ...+..- ...-|..|+++.....+.||.-. .+.....++.. ......+..++++--|=+.-++.|.
T Consensus 950 gimh~q~kp-ppepahf--lqsvgpSLV~a~~Gn~lgVYad~-a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 950 GIMHLQDKP-PPEPAHF--LQSVGPSLVTAQNGNILGVYADS-AELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred CeeeeccCC-CCcchhh--hhccCceeEEeccCcEEEEEecc-hhhhhhhhhccccccccCCccceeeeccccchhhccC
Confidence 665555443 2222211 12246677777766677777422 11111100000 0111234455566666555555665
Q ss_pred CCcee
Q 010051 398 NDKLV 402 (519)
Q Consensus 398 ~d~~i 402 (519)
..+.|
T Consensus 1026 e~G~I 1030 (1034)
T KOG4190|consen 1026 EHGAI 1030 (1034)
T ss_pred CCCce
Confidence 55444
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=5e-09 Score=90.52 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=105.6
Q ss_pred CEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC------------eEEEE
Q 010051 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG------------ELIIW 82 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~i~vw 82 (519)
.+..+.++|.+++||++..+....++++........+ . ....-...-+++.|..++. .+.+|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl-----~-~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKL-----L-DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCccee-----e-eEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 3445667888999999988888888887655431110 0 0111122223344444333 33334
Q ss_pred EcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cccccCeEEEEEcCCCCeEE
Q 010051 83 KLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL-DAHFHYVQGVAWDPLSKYVA 161 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~ 161 (519)
....+ ....+-||-+.++.++|+||+++++++..|..|++-....-..+..+ -+|...|..++.-+ +..|+
T Consensus 138 s~~~~-------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~Ll 209 (390)
T KOG3914|consen 138 SADSG-------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLL 209 (390)
T ss_pred ccccc-------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Cceee
Confidence 33322 23344579999999999999999999999999999887665555554 57999999999876 45689
Q ss_pred EeeCCCeEEEEecCCCCccc
Q 010051 162 SLSSDRTCRIYANRPTKSKG 181 (519)
Q Consensus 162 ~~~~dg~i~iwd~~~~~~~~ 181 (519)
++|.|++|++||+.+++...
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ecCCCCcEEEEecccCCccc
Confidence 99999999999999988653
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.3e-07 Score=77.37 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=129.5
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEecc
Q 010051 117 FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKA 196 (519)
Q Consensus 117 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 196 (519)
.+..++.|.++++.+++-+.....+.-..-.+.++.++++++++++.+....|..|.+.........
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~------------- 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN------------- 196 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-------------
Confidence 4667788888888888655433222111123788999999999999999999999988764321100
Q ss_pred CcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccccc----CCCCCC
Q 010051 197 GQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ----LPGASK 272 (519)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~ 272 (519)
.....-...-.+.+|+.....+|++..+ +.+.|||++....++.. -+.|.+
T Consensus 197 ---------------~~~a~t~D~gF~~S~s~~~~~FAv~~Qd----------g~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 197 ---------------IYEAPTSDHGFYNSFSENDLQFAVVFQD----------GTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred ---------------eEecccCCCceeeeeccCcceEEEEecC----------CcEEEEEecccccchhhhcccCCCCCC
Confidence 0000111222368899989999998887 79999999987766543 346889
Q ss_pred CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc------cc-ccEEEEEEcCCCCEE
Q 010051 273 PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL------HY-AAITDIAWSNNARYL 345 (519)
Q Consensus 273 ~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~------~~-~~i~~~~~s~~g~~l 345 (519)
.+..+.|++.|.. .+++..-.-+.+.+.|++++.....+... |. ..|..-.|+.++.-+
T Consensus 252 a~R~c~Fsl~g~l--------------DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 252 AFRVCRFSLYGLL--------------DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred ceEEEEecCCCcc--------------eEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence 9999999996643 56666666789999999998766554331 22 236777777777666
Q ss_pred EEEeCCCcEEEEEecCC
Q 010051 346 ALSSQDGYCTLVEFEND 362 (519)
Q Consensus 346 ~~~~~dg~i~vwd~~~~ 362 (519)
.+.+.+ .+.=|++.+.
T Consensus 318 ~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 318 DVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccch-hhheeecccc
Confidence 555443 3455555543
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=8.1e-09 Score=86.06 Aligned_cols=269 Identities=12% Similarity=0.170 Sum_probs=161.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eEEEecccc------------cCeEEEEEcCCC--CeEEE
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS-----VLQILDAHF------------HYVQGVAWDPLS--KYVAS 162 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~--~~l~~ 162 (519)
....|+++.|...|.+|++|...|.|.+|..+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568999999999999999999999999866532 223345553 357788887543 35777
Q ss_pred eeCCCeEEEEecCCCCccccccccceeeEEEeccCccccc--------CCc-----cccceeeecCCCcceeeEEEEccC
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTD--------DSK-----SAKNHLFHDETLPSFFRRLAWSPD 229 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~i~~~~~sp~ 229 (519)
.+.|.+|++|.+..............-.... +.+..+.. .+. ...........|+..|.+++|+.|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~-~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHS-PMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccccccc-ccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 7889999999988764332221111100000 00000000 000 011111233457778999999999
Q ss_pred CCeEEEecCCcceeeeecccceEEEEeccCCCccc--ccCCCCC-----CCeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 230 GSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA--LQLPGAS-----KPVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 230 g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~-----~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
...++++.. -.|.+|++.-..... ..+..|. .-|++..|+|..- +.+
T Consensus 184 ~et~lSaDd-----------LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c---------------n~f 237 (460)
T COG5170 184 KETLLSADD-----------LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC---------------NVF 237 (460)
T ss_pred hheeeeccc-----------eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc---------------ceE
Confidence 888886533 377888876443332 2233333 3477888888642 346
Q ss_pred EEEecCCeEEEEeCCCCCce------E--E--------EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccc
Q 010051 303 FAIATLNSLYIYDTESVPPI------A--I--------LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGI 366 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~~~~~~------~--~--------~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~ 366 (519)
.-.+..|.|++-|++..... . . +.+ -...|.++.|+++|+|+++-+. -+|++||++..+. .
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~-p 314 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN-P 314 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC-C
Confidence 66677789999999843211 0 0 111 2356889999999999987643 6899999986542 2
Q ss_pred eeeecCCcc--------cccCC---CCcccccCCccEEEeecCCc
Q 010051 367 PISLSGNKV--------SKDEN---KSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 367 ~~~~~~~~~--------~~~~~---~~~~~~s~~~~~l~~~~~d~ 400 (519)
..+.+-|.. ..... -..+.||.|...+++|+-..
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N 359 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN 359 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccc
Confidence 223323321 11112 23467777777777777443
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=2.4e-08 Score=82.73 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=68.5
Q ss_pred eeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcC-CCceEEE-ecccccCeEEEEEcC-CCCeEEEeeCCCeE
Q 010051 94 KVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVN-KGSVLQI-LDAHFHYVQGVAWDP-LSKYVASLSSDRTC 169 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~-~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i 169 (519)
+..+..+.|..+++.+.|+. +.+.+++|+.|+.+..||++ .++.+.. .+-|...|.+|.-+| .+.+++||+.|-.|
T Consensus 156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence 34556778999999999987 44688999999999999998 3444433 456888999998875 57799999999999
Q ss_pred EEEecCCC
Q 010051 170 RIYANRPT 177 (519)
Q Consensus 170 ~iwd~~~~ 177 (519)
++||.+..
T Consensus 236 ~~~DtRnm 243 (339)
T KOG0280|consen 236 RVLDTRNM 243 (339)
T ss_pred eeeehhcc
Confidence 99999964
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.3e-08 Score=88.08 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc
Q 010051 148 VQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS 227 (519)
Q Consensus 148 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (519)
+..+..++.+++|+++..+....+++++.... . ..++.....+...+.+.|-
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~---------------------------~kl~~~~~v~~~~~ai~~~ 116 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-G---------------------------AKLLDVSCVPKRPTAISFI 116 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-c---------------------------ceeeeEeecccCcceeeee
Confidence 34455677888888888888877887776542 0 0011111122233355555
Q ss_pred cCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec
Q 010051 228 PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 228 p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
.+.....++-..++ ...+.+|.... .+.....+|...++.++|+||+ ++|+++..
T Consensus 117 ~~~~sv~v~dkagD-------~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~----------------~~IitaDR 171 (390)
T KOG3914|consen 117 REDTSVLVADKAGD-------VYSFDILSADS--GRCEPILGHVSMLLDVAVSPDD----------------QFIITADR 171 (390)
T ss_pred eccceEEEEeecCC-------ceeeeeecccc--cCcchhhhhhhhhheeeecCCC----------------CEEEEecC
Confidence 55555555443321 13455555443 4445567899999999999998 66888888
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeee
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISL 370 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 370 (519)
|..|++-....--.+..+--+|..-|..++.-++ +.|+++|.|++|++||+.+++......+
T Consensus 172 DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 172 DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccch
Confidence 8899998877666666665559999999999765 4689999999999999999876544433
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.97 E-value=1.3e-06 Score=75.28 Aligned_cols=254 Identities=12% Similarity=0.067 Sum_probs=151.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCC-eEEEEEcCCCceEEEecccccC--eEEEEEcCCCCeEEEeeC-----CCeEEEEecC
Q 010051 105 DVLDLQWST-DGAFLLSGSVDN-SCIIWDVNKGSVLQILDAHFHY--VQGVAWDPLSKYVASLSS-----DRTCRIYANR 175 (519)
Q Consensus 105 ~v~~~~~s~-~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~ 175 (519)
....++.+| .+..++.+..-| ...+||..+++..+.+....+. --.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 456667777666 5788999999988776543222 123679999999998654 4889999998
Q ss_pred CCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc--------eeeeec
Q 010051 176 PTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK--------ISSMSE 247 (519)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~--------~~~~~~ 247 (519)
..- ..+.. + ..+.-....+.+.|||+.|+++.+.-. ......
T Consensus 86 ~~~-~ri~E--------~---------------------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 86 RGY-RRIGE--------F---------------------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred CCc-EEEeE--------e---------------------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 321 11000 0 111112336889999988888765322 223344
Q ss_pred ccceEEEEeccCCCc-ccccC--CCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 248 SINSAYIFSRKDLSR-PALQL--PGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~-~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
+..++...|..+... ....+ ..|...+..+++.++|..+...-..|.-.....+++.-..++.+....+....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~---- 211 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ---- 211 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH----
Confidence 556666666655432 12234 34777899999999986655444433322222223333333333333332111
Q ss_pred EeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCcee
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSS-QDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
... -.+.|-+|+++++|.++++.+ ..+.+.+||..++.+.....++.. ..++..+++ ++++.+.+..+
T Consensus 212 ~~~-l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~--------cGva~~~~~-f~~ssG~G~~~ 280 (305)
T PF07433_consen 212 WRR-LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDA--------CGVAPTDDG-FLVSSGQGQLI 280 (305)
T ss_pred HHh-hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCce--------eeeeecCCc-eEEeCCCccEE
Confidence 111 346789999999998776555 568899999999877655554332 234444444 56666665544
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.5e-09 Score=96.11 Aligned_cols=211 Identities=13% Similarity=0.115 Sum_probs=143.2
Q ss_pred eeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-------CceEEEecccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK-------GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
.+..+.||...|..++--.+.+.+++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999988777788899999999999999864 23667889999999999999888888765 89
Q ss_pred eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc--CCCeEEEecCCcceeee
Q 010051 168 TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP--DGSFLLVPAGSYKISSM 245 (519)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~~~~~~~~ 245 (519)
.|.+||.--++........ ...+.+..+..-| +...+.+++...
T Consensus 805 giHlWDPFigr~Laq~~da-----------------------------pk~~a~~~ikcl~nv~~~iliAgcsae----- 850 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA-----------------------------PKEGAGGNIKCLENVDRHILIAGCSAE----- 850 (1034)
T ss_pred cceeecccccchhHhhhcC-----------------------------cccCCCceeEecccCcchheeeeccch-----
Confidence 9999997665432211100 0011111222222 334444442221
Q ss_pred ecccceEEEEeccCCCc----ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc
Q 010051 246 SESINSAYIFSRKDLSR----PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP 321 (519)
Q Consensus 246 ~~~~~~i~i~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 321 (519)
.+++++|.+...- .+...++.+..+.+++..+.|+.+ +++-.+|.|.+.|.++|+.
T Consensus 851 ----STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l----------------Aa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 851 ----STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL----------------AAALSNGCIAILDARNGKV 910 (1034)
T ss_pred ----hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh----------------hHHhcCCcEEEEecCCCce
Confidence 5778888764321 112235666778999999998554 4555556899999999998
Q ss_pred eEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEE-EEecCCc
Q 010051 322 IAILAGLHYAAITDIAWSNNARYLALSSQDGYCTL-VEFENDE 363 (519)
Q Consensus 322 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~v-wd~~~~~ 363 (519)
+..+.. .......++ .|..+.|+....|.++.| |....+-
T Consensus 911 INswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 911 INSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 877765 333444444 366678888888999988 8765553
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=2.8e-08 Score=80.82 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=99.1
Q ss_pred eeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCcccc-ccccc---cccccccccCcceeE---EEEccCCC
Q 010051 5 TLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQK-KIPTA---SYQNSLSYHGSAINI---LRFSPCGG 77 (519)
Q Consensus 5 ~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~-~~~~~---~~~~~~~~~~~~v~~---~~~~~~~~ 77 (519)
++..+..|+++-.+-+.+-.++.++++..||.+.+++.+...... +++.. ......-.|...+.. ..|.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~-~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNA-QD 159 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEee-cc
Confidence 344444555554455555567889999999999999876521111 11100 000000011111110 00000 13
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce-EEEecccccCeEEEEEcC
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKGSV-LQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~ 155 (519)
..+.|+++..... .... . ....|.+++-+|.. ..+++|+.||.+-+||.++... ...+..|..++..+-|+|
T Consensus 160 ~~~a~~~~p~~t~----~~~~-~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 160 NFYANTLDPIKTL----IPSK-K-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred ceeeecccccccc----cccc-c-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence 4455665433210 1111 1 22348999998854 5677888999999999988743 345688999999999998
Q ss_pred -CCCeEEEeeCCCeEEEEecCC
Q 010051 156 -LSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 156 -~~~~l~~~~~dg~i~iwd~~~ 176 (519)
++..|+++++||.+..||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 567899999999999999765
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=3.9e-08 Score=82.09 Aligned_cols=266 Identities=12% Similarity=0.226 Sum_probs=159.9
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCc-cccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGE-KQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETG 90 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~ 90 (519)
...-|+++.|.-.|.|||+|...|.|.+|.-+... +... ....+..|.-.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk-----f~teFQshe~E------------------------ 75 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK-----FFTEFQSHELE------------------------ 75 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchh-----hhhhhcccccc------------------------
Confidence 34679999999999999999999999999654332 1111 11112222211
Q ss_pred ccceeeeccccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCc-------------------e------------
Q 010051 91 QAWKVLKNLSFHRKDVLDLQWSTDG--AFLLSGSVDNSCIIWDVNKGS-------------------V------------ 137 (519)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~-------------------~------------ 137 (519)
+..+..+. -...|..+.|..++ ..++..+.|.+|++|.+.... .
T Consensus 76 --FDYLkSle-ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl 152 (460)
T COG5170 76 --FDYLKSLE-IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL 152 (460)
T ss_pred --hhhhhhcc-HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc
Confidence 01112211 23457778887754 356667789999999874320 0
Q ss_pred ------E-----EEe-cccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCc
Q 010051 138 ------L-----QIL-DAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSK 205 (519)
Q Consensus 138 ------~-----~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
+ +.+ ..|...|.++.|..|...++++ .|-.|.+|++...... ..+.
T Consensus 153 s~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s---------FnIV------------ 210 (460)
T COG5170 153 SEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS---------FNIV------------ 210 (460)
T ss_pred cccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc---------eEEE------------
Confidence 0 011 3566778889998887777765 4778999988653210 0000
Q ss_pred cccceeeecCCCcceeeEEEEccCCCeEEE-ecCCcceeeeecccceEEEEeccCCCccc-----c----------cCCC
Q 010051 206 SAKNHLFHDETLPSFFRRLAWSPDGSFLLV-PAGSYKISSMSESINSAYIFSRKDLSRPA-----L----------QLPG 269 (519)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~-~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-----~----------~~~~ 269 (519)
.........+..-|++..|+|..-.++. +++. +.|++-|++....+. . .+.+
T Consensus 211 --DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk----------G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e 278 (460)
T COG5170 211 --DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK----------GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE 278 (460)
T ss_pred --eccCccHHHHHHHHhhcccCHhHcceEEEecCC----------CcEEehhhhhhhhccCchhhhhhccCcccchhHHH
Confidence 0001111122344778889996543332 2333 688898887432211 1 1112
Q ss_pred CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC-CceEEEecccc------------ccE---
Q 010051 270 ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV-PPIAILAGLHY------------AAI--- 333 (519)
Q Consensus 270 ~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~------------~~i--- 333 (519)
-...|..+.|++.|+++++... .++.+||+... .++.++.- |. ..|
T Consensus 279 ivsSISD~kFs~ngryIlsRdy-----------------ltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 279 IVSSISDFKFSDNGRYILSRDY-----------------LTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred HhhhhcceEEcCCCcEEEEecc-----------------ceEEEEecccccCCceeech-HHHHHHHHHhhhhccceeee
Confidence 2356889999999976654332 47999998754 45666543 32 222
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 334 TDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 334 ~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
..+.||-|.+.+++|+.....-++-..+
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEEecCCcccccccccccceeeecccc
Confidence 3478999999999999888888877544
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=1.3e-06 Score=91.10 Aligned_cols=260 Identities=13% Similarity=0.151 Sum_probs=145.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceEEEecc-c-------------ccCeEEEEEcCCCCeEEEeeC-CCeEE
Q 010051 107 LDLQWSTD-GAFLLSGSVDNSCIIWDVNKGSVLQILDA-H-------------FHYVQGVAWDPLSKYVASLSS-DRTCR 170 (519)
Q Consensus 107 ~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h-------------~~~v~~~~~~~~~~~l~~~~~-dg~i~ 170 (519)
..++++++ +..+++-+..+.|++||.. +..+..+.+ . -.....++++++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5566666778899999975 544433322 1 123578999998887666544 56799
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC-CeEEEecCCcceeeeeccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG-SFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~~~~~ 249 (519)
++|+.++... .+...+...... ...... ....-.....++++|++ ..+++..+.
T Consensus 650 ~id~~~~~V~-----------tlag~G~~g~~~-~gg~~~---~~~~ln~P~gVa~dp~~g~LyVad~~~---------- 704 (1057)
T PLN02919 650 EIDFVNETVR-----------TLAGNGTKGSDY-QGGKKG---TSQVLNSPWDVCFEPVNEKVYIAMAGQ---------- 704 (1057)
T ss_pred EEecCCCEEE-----------EEeccCcccCCC-CCChhh---hHhhcCCCeEEEEecCCCeEEEEECCC----------
Confidence 9998765321 111110000000 000000 00001223478999954 444444444
Q ss_pred ceEEEEeccCCCccc-------ccCCC------CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 250 NSAYIFSRKDLSRPA-------LQLPG------ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~-------~~~~~------~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
+.|++|+..+..... ....+ .-.....++++|++.. ++++-..++.|++||+
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~---------------LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE---------------LYIADSESSSIRALDL 769 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE---------------EEEEECCCCeEEEEEC
Confidence 456666654321100 00001 1123456888888743 3455556789999999
Q ss_pred CCCCceEEEec------------c--------ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCc--
Q 010051 317 ESVPPIAILAG------------L--------HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNK-- 374 (519)
Q Consensus 317 ~~~~~~~~~~~------------~--------~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-- 374 (519)
.++.......+ . .......++++++|.++++-..++.|++||..++...... -.+..
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~ 848 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGF 848 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCC
Confidence 87653221110 0 0112358899999998888888999999999876432211 11110
Q ss_pred ------ccccCCCCcccccCCccEEEeecCCcee-eecCCC
Q 010051 375 ------VSKDENKSPLVTKSEDMIIEASTNDKLV-TAETKE 408 (519)
Q Consensus 375 ------~~~~~~~~~~~~s~~~~~l~~~~~d~~i-~~~~~~ 408 (519)
.........++++++|.++++.+.++.| +|+...
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 0112345678999999988887777776 665544
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=3.2e-09 Score=62.22 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=36.5
Q ss_pred CCeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEE
Q 010051 3 GGTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWL 41 (519)
Q Consensus 3 ~~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd 41 (519)
|+.++.+.+|.+.|++|+|+|++++|++|+.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788899999999999999999999999999999997
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=1.6e-09 Score=102.62 Aligned_cols=263 Identities=16% Similarity=0.225 Sum_probs=163.6
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEE------
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELI------ 80 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~------ 80 (519)
+.+..|+..-+|++|+-+.++|+.|+..|.|+++++.+|..... ..+|...|+.+.-+-++....
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---------~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---------VNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---------ccccccccccccccCCcceeeeecccc
Confidence 34556788999999999999999999999999999999975443 556888888877776654433
Q ss_pred -----EEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEec----ccccCeEEE
Q 010051 81 -----IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILD----AHFHYVQGV 151 (519)
Q Consensus 81 -----vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~ 151 (519)
+|++.... ...+. -..-.++.|+...+.-+.|.......+||++++..+.++- +....-.+.
T Consensus 1166 ~PlsaLW~~~s~~-----~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG-----GPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred CchHHHhcccccc-----Ccccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 56664321 12222 2345788998766555566665678999999998766632 122333678
Q ss_pred EEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCC
Q 010051 152 AWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGS 231 (519)
Q Consensus 152 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 231 (519)
.|+|+..+++ .|| .+||++..+.... +. .+. .-..-.|+|.|.
T Consensus 1237 ~FsP~D~LIl---ndG--vLWDvR~~~aIh~--FD-----------------------------~ft-~~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1237 HFSPCDTLIL---NDG--VLWDVRIPEAIHR--FD-----------------------------QFT-DYGGGGFHPSGN 1279 (1516)
T ss_pred ccCCCcceEe---eCc--eeeeeccHHHHhh--hh-----------------------------hhe-ecccccccCCCc
Confidence 8999988776 355 6899987632111 10 000 011346899999
Q ss_pred eEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCC--cccc----cceEEEEE
Q 010051 232 FLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAG--FFKL----PYRLIFAI 305 (519)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g--~~~~----~~~~~~~~ 305 (519)
.++. +-.|||+++.. .+...+. -.-..+.|+..|..+...-.-. .-.+ -...++
T Consensus 1280 eVII---------------NSEIwD~RTF~-lLh~VP~--Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~f-- 1339 (1516)
T KOG1832|consen 1280 EVII---------------NSEIWDMRTFK-LLHSVPS--LDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLF-- 1339 (1516)
T ss_pred eEEe---------------echhhhhHHHH-HHhcCcc--ccceEEEeccCccchhhhhhhhhhhhhhcccccccchh--
Confidence 9987 45579987642 2222222 2234678888886654332100 0000 000011
Q ss_pred ecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEe
Q 010051 306 ATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSS 349 (519)
Q Consensus 306 ~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 349 (519)
...+-|+......+.++.. ...|.+++-+|...+|.+--
T Consensus 1340 ---SSFRTf~a~dYs~iaTi~v--~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1340 ---SSFRTFDAIDYSDIATIPV--DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ---hhhccccccccccceeeec--ccchhhhhcCCccceEEEEe
Confidence 1345566666667777765 55677777777766666543
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=4.7e-09 Score=97.58 Aligned_cols=179 Identities=17% Similarity=0.214 Sum_probs=112.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceEEEecccccCeEEEEEcC-CCCeEEEeeCCCeEEEEecCCCCcc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG-SVLQILDAHFHYVQGVAWDP-LSKYVASLSSDRTCRIYANRPTKSK 180 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 180 (519)
......++|+-....+++.+....|.+||++.| ..+..+++|...|..+.|.. .-..+.+++.||+|+.||.......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 344567888875555555666788999999876 46778889999999999874 2346889999999999998765321
Q ss_pred ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCc-ceeeeecccceEEEEeccC
Q 010051 181 GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSY-KISSMSESINSAYIFSRKD 259 (519)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~i~i~~~~~ 259 (519)
..... +...+|..-.+.|-|.-.++--..+ ..+......+....|+..+
T Consensus 238 ~~~~v------------------------------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 238 SKRTV------------------------------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred cceec------------------------------cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence 11100 1112333444445443332221111 1111222224445677777
Q ss_pred CCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC
Q 010051 260 LSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE 317 (519)
Q Consensus 260 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~ 317 (519)
...++..+.||...|....|-..+.- +|.+..-.-.+++-+.|.++++|-+.
T Consensus 288 ~~~pVh~F~GH~D~V~eFlWR~r~e~------~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFLWRKRKEC------DGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCcceeeecCcchHHHHHhhhhcccc------cCCCCccceeEEEeecCCceEeeecc
Confidence 77889999999999888777554321 12122222458899999999999765
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.4e-07 Score=87.08 Aligned_cols=231 Identities=16% Similarity=0.212 Sum_probs=151.2
Q ss_pred eeEEEEccCC-------CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC------------CEEEEEeCCCeE
Q 010051 67 INILRFSPCG-------GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG------------AFLLSGSVDNSC 127 (519)
Q Consensus 67 v~~~~~~~~~-------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg~i 127 (519)
-.++.|+|.| ..|.+-|..+. +.++.+..|...|+.+.|.|-. -.||++...|.|
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSL------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhh------hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 5566777764 67888887766 6788888899999999998721 146777788999
Q ss_pred EEEEcCCCceEEEecccccCeEEEEEcC---CC-CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccC
Q 010051 128 IIWDVNKGSVLQILDAHFHYVQGVAWDP---LS-KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDD 203 (519)
Q Consensus 128 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.+||...+..+..+..|..++..++|-+ +. ..|+......+|.+|+..+++..
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~----------------------- 148 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF----------------------- 148 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee-----------------------
Confidence 9999999988888999999999999975 34 46777777889999999988632
Q ss_pred CccccceeeecCCCcceeeEEEEcc-CCCeEEEecCCcceeeeecccceEEEEeccCCC------cccccCCCCCC----
Q 010051 204 SKSAKNHLFHDETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSESINSAYIFSRKDLS------RPALQLPGASK---- 272 (519)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~---- 272 (519)
|..........++.+.| |.+++.+.+..+ .+.+-+.-... +.++....|..
T Consensus 149 --------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g----------~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 149 --------WKYDYSHEILSCFRVDPFDSRHFCVLGSKG----------FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred --------eccccCCcceeeeeeCCCCcceEEEEccCc----------eEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence 22222222334566666 344444433332 22222211100 00011111110
Q ss_pred ------------C---------eEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc
Q 010051 273 ------------P---------VVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA 331 (519)
Q Consensus 273 ------------~---------v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 331 (519)
. ...++|+|.- +.++.......+.++|++-..++....- ..+
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~----------------rn~lfi~~prellv~dle~~~~l~vvpi-er~ 273 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHW----------------RNILFITFPRELLVFDLEYECCLAVVPI-ERG 273 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhh----------------hceEEEEeccceEEEcchhhceeEEEEe-ccC
Confidence 0 1122344433 3345555667899999998888888776 566
Q ss_pred cEEEEEEcCCCC--EEEEEeCCCcEEEEEecC
Q 010051 332 AITDIAWSNNAR--YLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 332 ~i~~~~~s~~g~--~l~~~~~dg~i~vwd~~~ 361 (519)
.+.-+.|-|+++ .|++...||.+.+|--..
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 677788888764 699999999999997554
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=8.8e-09 Score=97.88 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=132.5
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC--eEEE
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR--TCRI 171 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--~i~i 171 (519)
+....+..|+...+|++|+-+.++|+.|+..|.|+++++.+|.....+.+|.++|+.+.=+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44556677899999999999999999999999999999999999999999999999999998998877665433 4678
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCC-------------CcceeeEEEEccCCCeEEEecC
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDET-------------LPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
|++...-. ....+.......++........+.......++...+ ....-+...|+|+.+.++
T Consensus 1172 W~~~s~~~-~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---- 1246 (1516)
T KOG1832|consen 1172 WDASSTGG-PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---- 1246 (1516)
T ss_pred hccccccC-ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----
Confidence 88765211 111111111111111111111111111122222111 112235688999988877
Q ss_pred CcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
+.-.+||.+.. ..+..+.... .-..-.|+|.|..++. .-.|||+++
T Consensus 1247 -----------ndGvLWDvR~~-~aIh~FD~ft-~~~~G~FHP~g~eVII---------------------NSEIwD~RT 1292 (1516)
T KOG1832|consen 1247 -----------NDGVLWDVRIP-EAIHRFDQFT-DYGGGGFHPSGNEVII---------------------NSEIWDMRT 1292 (1516)
T ss_pred -----------eCceeeeeccH-HHHhhhhhhe-ecccccccCCCceEEe---------------------echhhhhHH
Confidence 35568998755 3333333222 1123358998854321 235899999
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEE
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLAL 347 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 347 (519)
.+.+..... -.-..+.|+..|..++.
T Consensus 1293 F~lLh~VP~---Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1293 FKLLHSVPS---LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred HHHHhcCcc---ccceEEEeccCccchhh
Confidence 888776654 22456788888876553
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=4.3e-06 Score=73.05 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=132.9
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEc-CCCCeEEEeeCCCeEEEEecCCCCccccccc
Q 010051 108 DLQWST-DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD-PLSKYVASLSSDRTCRIYANRPTKSKGVEKM 185 (519)
Q Consensus 108 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 185 (519)
+++|.+ ++.++++--..+.|+.|+..++.... +.... ...+++. ++ ..|+.+...+ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 66666666678999999998876533 33222 6777887 55 4555555544 55558877642211111
Q ss_pred cceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccc
Q 010051 186 NYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPAL 265 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 265 (519)
. .........+.+++.|+|+..++......... ...+.++.++.. .. ..
T Consensus 79 ~--------------------------~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~--~~~g~v~~~~~~--~~-~~ 127 (246)
T PF08450_consen 79 P--------------------------DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG--IDPGSVYRIDPD--GK-VT 127 (246)
T ss_dssp E--------------------------TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC--GGSEEEEEEETT--SE-EE
T ss_pred c--------------------------CCCcccCCCceEEEcCCCCEEEEecCCCcccc--ccccceEEECCC--Ce-EE
Confidence 0 00112355778999999997776554321100 000456666654 22 22
Q ss_pred cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc-e---EEEecccc--ccEEEEEEc
Q 010051 266 QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP-I---AILAGLHY--AAITDIAWS 339 (519)
Q Consensus 266 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~-~---~~~~~~~~--~~i~~~~~s 339 (519)
.+.......+.++|+|+++.| +++-+..+.|..|++..... + ..+..... +..-.+++.
T Consensus 128 ~~~~~~~~pNGi~~s~dg~~l---------------yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 128 VVADGLGFPNGIAFSPDGKTL---------------YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp EEEEEESSEEEEEEETTSSEE---------------EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred EEecCcccccceEECCcchhe---------------eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 222234557899999998543 34555667899998863222 1 22211012 247789999
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCccccc-CCccEEE
Q 010051 340 NNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTK-SEDMIIE 394 (519)
Q Consensus 340 ~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~ 394 (519)
.+|++.++.-..+.|.+++-+ +++...+.++. ..+++++|. ++...|.
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~------~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPV------PRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS------SSEEEEEEESTTSSEEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC------CCEEEEEEECCCCCEEE
Confidence 999988887788999999977 65555555542 245777773 4544443
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.82 E-value=1.2e-08 Score=59.81 Aligned_cols=38 Identities=32% Similarity=0.567 Sum_probs=35.9
Q ss_pred CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 320 PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
+++..+.+ |...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788888 999999999999999999999999999997
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=9.1e-07 Score=73.75 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=103.3
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------------CCeEE
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------------GGELI 80 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~i~ 80 (519)
=+-++||||+.+||.+...|+|+|||+.. ..+..++.... ........|..+.|... .|.++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccc--cCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 46799999999999999999999999875 33344432211 11122344555555443 34444
Q ss_pred EEEcccCCCcccceeeeccc---cCCCCeEEEEEcCCCCEEEEEeC----C-------CeEEEEEcCCCceE--------
Q 010051 81 IWKLHTTETGQAWKVLKNLS---FHRKDVLDLQWSTDGAFLLSGSV----D-------NSCIIWDVNKGSVL-------- 138 (519)
Q Consensus 81 vw~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~vwd~~~~~~~-------- 138 (519)
-|-+..+. .+.++....+. .+...|.++.|+|..++|+.|+. + .-+..|.+-++.+-
T Consensus 123 Sy~vs~gt-~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~ 201 (282)
T PF15492_consen 123 SYLVSVGT-NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSE 201 (282)
T ss_pred eEEEEccc-CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccC
Confidence 44443221 11222333322 24678999999999888887753 1 13667765432110
Q ss_pred -------------EEe--------cccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccc
Q 010051 139 -------------QIL--------DAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGV 182 (519)
Q Consensus 139 -------------~~~--------~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 182 (519)
..+ ......|..|..+|||..|++...+|.|.+|++...+....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred ccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 000 11346789999999999999999999999999987664433
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=1.9e-07 Score=76.09 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=70.7
Q ss_pred ceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccc
Q 010051 250 NSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLH 329 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 329 (519)
+..+.|+++.....+..... ...|.+++-+|..+ +.+++|+.||.+-+||.+.......+...|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq---------------~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah 222 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQ---------------HLVCCGTDDGIVGLWDARNVAMPVSLLKAH 222 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcccc---------------cEEEEecCCCeEEEEEcccccchHHHHHHh
Confidence 46667776543332222222 23388888888654 457888889999999999876554443349
Q ss_pred cccEEEEEEcCC-CCEEEEEeCCCcEEEEEecCC
Q 010051 330 YAAITDIAWSNN-ARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 330 ~~~i~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~ 362 (519)
..+|+.+-|+|. +..|++++.||.+..||-.+.
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 999999999995 578999999999999997753
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=4.9e-07 Score=86.70 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC---------CCeEEEEe
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS---------DRTCRIYA 173 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd 173 (519)
...|+-+.. ++++|++|...|+|.+-|.++.+.++++..|++.|.++.. .|+.|++||. |..|+|||
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 334666664 4889999999999999999999999999999999987665 4899999885 56789999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC-CCeEEEecCCcceeeeecccceE
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD-GSFLLVPAGSYKISSMSESINSA 252 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~~~~~~~~~~~~~~i 252 (519)
++..+......++.. ..-+.|+|. ...+++++.. +..
T Consensus 253 LRmmral~PI~~~~~--------------------------------P~flrf~Psl~t~~~V~S~s----------Gq~ 290 (1118)
T KOG1275|consen 253 LRMMRALSPIQFPYG--------------------------------PQFLRFHPSLTTRLAVTSQS----------GQF 290 (1118)
T ss_pred hhhhhccCCcccccC--------------------------------chhhhhcccccceEEEEecc----------cce
Confidence 998764332222111 123556664 3445555544 466
Q ss_pred EEEeccCCCcc---cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEe
Q 010051 253 YIFSRKDLSRP---ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYD 315 (519)
Q Consensus 253 ~i~~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd 315 (519)
.+.|..+...+ +..+......+..+.+++.++. ++.|..+|.|.+|-
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a----------------lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDA----------------LAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCce----------------EEEecccCcEeeec
Confidence 66664333333 2223333445888999998854 55555666899997
No 306
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.72 E-value=1.4e-05 Score=73.64 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=143.1
Q ss_pred CEEEEEEecCCCEEEEEcCCCcEEEEEecCCcccc-ccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC---c
Q 010051 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQK-KIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET---G 90 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~---~ 90 (519)
.|+++.|+++..-||+|...|.|.||.+...+... .... .......-.++-+++.-.|-|+..... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP---------PDLDYNFRRFSLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC---------cccCcccccccccCCCcceEEehhhCCcccc
Confidence 58999999999999999999999999887654321 0000 000000011111222333445543221 1
Q ss_pred ccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe--cc------cccCeEEEEEcC-----CC
Q 010051 91 QAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL--DA------HFHYVQGVAWDP-----LS 157 (519)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~------h~~~v~~~~~~~-----~~ 157 (519)
..+....-+....++|++++.| |=.++|.|..+|.+.|.|++....+..- .. ....|+++.|.. |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2345555556678999999997 4559999999999999999877766542 22 234678888861 22
Q ss_pred ---CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEE
Q 010051 158 ---KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLL 234 (519)
Q Consensus 158 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 234 (519)
-.|++|...|.+.+|.+... ++|.+.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~--------------------------------------------------~~g~f~v 182 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPS--------------------------------------------------SNGRFSV 182 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE---------------------------------------------------GGG-EEE
T ss_pred ccceEEEEEeCCCCEEEEEEecC--------------------------------------------------CCCceEE
Confidence 35788888899888876321 1111111
Q ss_pred Ee-----cCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC
Q 010051 235 VP-----AGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN 309 (519)
Q Consensus 235 ~~-----~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~ 309 (519)
.. ..+.. ...|..++..+........ ..+... ..| ..-.-++....+.
T Consensus 183 ~~~~~~~~~~~~-------i~~I~~i~~~~G~~a~At~----------------~~~~~l-~~g---~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 183 QFAGATTNHDSP-------ILSIIPINADTGESALATI----------------SAMQGL-SKG---ISIPGYVVVVSES 235 (395)
T ss_dssp EEEEEE--SS-----------EEEEEETTT--B-B-BH----------------HHHHGG-GGT-------EEEEEE-SS
T ss_pred EEeeccccCCCc-------eEEEEEEECCCCCcccCch----------------hHhhcc-ccC---CCcCcEEEEEccc
Confidence 00 00000 0012222221111100000 000000 000 0002345556677
Q ss_pred eEEEEeCCCCCceEEEeccccccEEEEEE-----cCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcc
Q 010051 310 SLYIYDTESVPPIAILAGLHYAAITDIAW-----SNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPL 384 (519)
Q Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~-----s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (519)
.++++...+.+....... .......+.+ ...+..|++-..+|.|+++.+..-+......++... ........
T Consensus 236 ~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~--d~~~~~~s 312 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL--DSRRLSSS 312 (395)
T ss_dssp EEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----HHHHTT-
T ss_pred ceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc--cccccccc
Confidence 899999988776655543 3233344445 235677888899999999999876544444443211 12344566
Q ss_pred cccCCccEEEeecCCcee
Q 010051 385 VTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 385 ~~s~~~~~l~~~~~d~~i 402 (519)
.++++|..++-.+.....
T Consensus 313 sis~~Gdi~~~~gpsE~~ 330 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQ 330 (395)
T ss_dssp EE-TTS-EEEE-SSSEEE
T ss_pred EECCCCCEEEEeCcccEE
Confidence 778888877666655544
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.4e-07 Score=78.54 Aligned_cols=253 Identities=12% Similarity=0.146 Sum_probs=162.0
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCC
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTE 88 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~ 88 (519)
.+-|.+.|+.+... -.+++.+++.||.++.|--.. +..+
T Consensus 5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~----------------------isGv------------------ 43 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR----------------------ISGV------------------ 43 (558)
T ss_pred hhcccceeeeEeee-hhheEEeeecchhhhhcCCCC----------------------ccce------------------
Confidence 35677777777655 356899999999999994221 1111
Q ss_pred CcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceEEEec--ccccCeEEEEEcCCC-C-eE-EE
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV-DNSCIIWDVNKGSVLQILD--AHFHYVQGVAWDPLS-K-YV-AS 162 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~-~-~l-~~ 162 (519)
..+..+..|...|.+++.+-+|..+.+++. |..++++|+++-..+..++ .-.+.+.. ..++.. . .+ ++
T Consensus 44 -----EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs 117 (558)
T KOG0882|consen 44 -----EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVS 117 (558)
T ss_pred -----eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEee
Confidence 344555668888999999999999999777 9999999998765443222 22222221 122221 1 23 33
Q ss_pred eeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
.-.+|.+.++|-...... ..+...-|..+|..+.+++-+..+++....
T Consensus 118 ~~~sg~i~VvD~~~d~~q-----------------------------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~--- 165 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQ-----------------------------DGYFKKLHFSPVKKIRYNQAGDSAVSIDIS--- 165 (558)
T ss_pred cccCCCcEEECCcCCcCc-----------------------------cceecccccCceEEEEeeccccceeecccc---
Confidence 345788999987654311 122333456778899999998888876544
Q ss_pred eeeecccceEEEEeccC-CCcc-------------cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecC
Q 010051 243 SSMSESINSAYIFSRKD-LSRP-------------ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATL 308 (519)
Q Consensus 243 ~~~~~~~~~i~i~~~~~-~~~~-------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d 308 (519)
+.|.-|.... .+.+ +..+........++.|+|++..+ .+.+.|
T Consensus 166 -------gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi----------------stl~~D 222 (558)
T KOG0882|consen 166 -------GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI----------------STLNPD 222 (558)
T ss_pred -------ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcc----------------cccCcc
Confidence 4666776652 1111 11222334567899999999554 444556
Q ss_pred CeEEEEeCCCCCceEEEecc-------------------------------cc-ccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010051 309 NSLYIYDTESVPPIAILAGL-------------------------------HY-AAITDIAWSNNARYLALSSQDGYCTL 356 (519)
Q Consensus 309 ~~i~vwd~~~~~~~~~~~~~-------------------------------~~-~~i~~~~~s~~g~~l~~~~~dg~i~v 356 (519)
..|++++.++++.++.+... |. ..-+.+.|...|++|+-++.=| |+|
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 68999999888655443210 11 2235678888999999887655 888
Q ss_pred EEecCCcc
Q 010051 357 VEFENDEL 364 (519)
Q Consensus 357 wd~~~~~~ 364 (519)
.++.++..
T Consensus 302 in~~tn~v 309 (558)
T KOG0882|consen 302 INLDTNTV 309 (558)
T ss_pred EEeecCeE
Confidence 88887754
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=1e-05 Score=80.63 Aligned_cols=239 Identities=11% Similarity=0.159 Sum_probs=139.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecC----CCC
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR----PTK 178 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~ 178 (519)
...|.++.|..+...++.+..+|.|.+-|.++.... ....-...|.+++|+||.+.++..+..+++.+-+-. ..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 468999999999999999999999999998776532 223345789999999999999988888887765431 111
Q ss_pred cccc--------cccccee-eEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 179 SKGV--------EKMNYVC-QHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 179 ~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
.... ....+.. ...+...........................=.+++|--||.++++..-. ....
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~------~~~~ 220 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE------SETG 220 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe------ccCC
Confidence 1100 0000000 00111111111111111111111111122333479999999999985422 1122
Q ss_pred -ceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC---CCceEEE
Q 010051 250 -NSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES---VPPIAIL 325 (519)
Q Consensus 250 -~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~---~~~~~~~ 325 (519)
..+++||... .....-......-.+++|-|.|..+++. -.-..++.|.+|.-.. |.....+
T Consensus 221 ~RkirV~drEg--~Lns~se~~~~l~~~LsWkPsgs~iA~i-------------q~~~sd~~IvffErNGL~hg~f~l~~ 285 (1265)
T KOG1920|consen 221 TRKIRVYDREG--ALNSTSEPVEGLQHSLSWKPSGSLIAAI-------------QCKTSDSDIVFFERNGLRHGEFVLPF 285 (1265)
T ss_pred ceeEEEecccc--hhhcccCcccccccceeecCCCCeEeee-------------eecCCCCcEEEEecCCccccccccCC
Confidence 6899999862 2111122223344579999988655332 2223456899998542 2222222
Q ss_pred eccccccEEEEEEcCCCCEEEE---EeCCCcEEEEEecCCcc
Q 010051 326 AGLHYAAITDIAWSNNARYLAL---SSQDGYCTLVEFENDEL 364 (519)
Q Consensus 326 ~~~~~~~i~~~~~s~~g~~l~~---~~~dg~i~vwd~~~~~~ 364 (519)
.. ....|..++|+.++..||+ ......|++|-+.+..+
T Consensus 286 p~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 286 PL-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred cc-cccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 22 2344899999999999998 44445599999887643
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=2.2e-05 Score=73.97 Aligned_cols=258 Identities=11% Similarity=0.008 Sum_probs=137.7
Q ss_pred CCEEEEEcCCCcEEEEEecCCccccccccccccccc-cccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccccCC
Q 010051 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSL-SYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHR 103 (519)
Q Consensus 25 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~ 103 (519)
+..++.++.+|.++-+|..+|+.+.+.........- ....+ .+.+...++.|.-+|..+++ .+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~---~v~v~~~~g~l~ald~~tG~------~~W~~~~~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDG---LVLVHTSNGMLQALNESDGA------VKWTVNLDV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECC---EEEEECCCCEEEEEEccCCC------EeeeecCCC
Confidence 456677778899999999999987766543221100 00111 23344556788888888773 222221110
Q ss_pred CC-----eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccccc-------CeEEEEEcC--CCCeEEEeeCCCeE
Q 010051 104 KD-----VLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFH-------YVQGVAWDP--LSKYVASLSSDRTC 169 (519)
Q Consensus 104 ~~-----v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~~--~~~~l~~~~~dg~i 169 (519)
.. ...... .+..++.++.+|.+..+|..+|+.+........ ....+.-+| .+..++.++.+|.+
T Consensus 191 ~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 191 PSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred CcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence 00 011111 134577788899999999999987654321100 001111122 24567777889999
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
..+|..+++..-.... .. ...+. ..+..+++++.+
T Consensus 269 ~ald~~tG~~~W~~~~--------------------------------~~-~~~~~--~~~~~vy~~~~~---------- 303 (394)
T PRK11138 269 VALDLRSGQIVWKREY--------------------------------GS-VNDFA--VDGGRIYLVDQN---------- 303 (394)
T ss_pred EEEECCCCCEEEeecC--------------------------------CC-ccCcE--EECCEEEEEcCC----------
Confidence 9999988753211000 00 00111 234555555555
Q ss_pred ceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccc
Q 010051 250 NSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLH 329 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 329 (519)
+.++.+|..+....-..-............. + ..++.++.+|.|+++|..+|+.+..... .
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~-----------------g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~ 364 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N-----------------GYLVVGDSEGYLHWINREDGRFVAQQKV-D 364 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCCcccCCEEE-C-----------------CEEEEEeCCCEEEEEECCCCCEEEEEEc-C
Confidence 3455555543221100000000000111111 1 4678888999999999999998877654 2
Q ss_pred cccEE-EEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 330 YAAIT-DIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 330 ~~~i~-~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
...+. ...+ .+..|+.++.||.|+.++.
T Consensus 365 ~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 22232 2222 2447888899999988764
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.6e-06 Score=82.70 Aligned_cols=286 Identities=13% Similarity=0.087 Sum_probs=148.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccc-cc-
Q 010051 106 VLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKG-VE- 183 (519)
Q Consensus 106 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~- 183 (519)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.+.+|......... ..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 5679999998889999999999999988777766677899999999999999999999999999999876322111 10
Q ss_pred -c--ccc---eeeEEEeccCcccc-------cCCccccceeeecC-CCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 184 -K--MNY---VCQHVITKAGQHST-------DDSKSAKNHLFHDE-TLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 184 -~--~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
. +.. .+...++..+...+ .+.......++... .....-..-.=.|+|..+++++.++.++.++...
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 0 000 01111111110000 00000000011110 0000000111246788888887776555555555
Q ss_pred ceEEEEeccCCCcccccCCCCCCCeEEE-EEcCCccccc--ccCCCCcc--cc----c--ceEEEEEecCCeEEEEeCCC
Q 010051 250 NSAYIFSRKDLSRPALQLPGASKPVVAV-RFCPLAFNLR--ESNSAGFF--KL----P--YRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~--~~~~~g~~--~~----~--~~~~~~~~~d~~i~vwd~~~ 318 (519)
....+...... ....+.+....|.++ .+-.+..+++ .|...... ++ . ..-++++-..|.+ .
T Consensus 222 ~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL------r 293 (1416)
T KOG3617|consen 222 RQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL------R 293 (1416)
T ss_pred cEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc------c
Confidence 55555444322 111122222222222 1111111110 00000000 00 0 0012222222211 1
Q ss_pred CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC-cc----cceeeecCCcccccCCCCcccccCCccEE
Q 010051 319 VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND-EL----GIPISLSGNKVSKDENKSPLVTKSEDMII 393 (519)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 393 (519)
.....-+. ....+++++++..+..|..|...|.+.+|.--+. -. ...|.+.+... ..+.|+.+.|.|--..+
T Consensus 294 ~~eKyg~e--~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e-~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 294 KSEKYGLE--LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRE-SLGKISLIRWGPIKSTA 370 (1416)
T ss_pred CCcchhhh--cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchh-hccceEEEEeccccchh
Confidence 11112222 3567999999999999999999999999964332 12 23355544432 34677778888866655
Q ss_pred EeecCCcee
Q 010051 394 EASTNDKLV 402 (519)
Q Consensus 394 ~~~~~d~~i 402 (519)
+.-+....+
T Consensus 371 avn~~~~v~ 379 (1416)
T KOG3617|consen 371 AVNTEEDVV 379 (1416)
T ss_pred hhhhhhhee
Confidence 554444443
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.68 E-value=2.9e-05 Score=72.99 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=90.5
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc---------CCCeEEEE
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP---------CGGELIIW 82 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~i~vw 82 (519)
|...|.--+++..+++++.|+.-|.+++|+-..++....- ..+..+.+..+..++ .+|.|.++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK--------NEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc--------ccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 5567777778888999999999999999998877644321 111223333334444 46899999
Q ss_pred EcccCCCcccceeeecc-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eEEEecccccCeEEEEEc
Q 010051 83 KLHTTETGQAWKVLKNL-SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS----VLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~ 154 (519)
.+........ ..+... ..|...|++++|++|+..|++|...|+|.+-.+.+.. ..+.+..-.+.|..+.+.
T Consensus 104 ql~~~~p~~~-~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 104 QLNKELPRDL-DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred hhhccCCCcc-eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 8877433221 222222 2378899999999999999999999999998887721 122333344566666654
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=5.4e-06 Score=79.38 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=112.4
Q ss_pred eccccCCCC-eEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCC------ceE--EEecc-----cccCeEEEEEcCCC
Q 010051 97 KNLSFHRKD-VLDLQWSTDGAFLLSGSVDN-----SCIIWDVNKG------SVL--QILDA-----HFHYVQGVAWDPLS 157 (519)
Q Consensus 97 ~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~------~~~--~~~~~-----h~~~v~~~~~~~~~ 157 (519)
+.++.+... |..+....+..+|++.+.|+ .|++|+++.- .++ ..+.. ...++.+++.+.+-
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l 137 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL 137 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc
Confidence 334444444 33333333335777777654 4899998742 233 12222 34678899999998
Q ss_pred CeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe-EEEe
Q 010051 158 KYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF-LLVP 236 (519)
Q Consensus 158 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~-l~~~ 236 (519)
+.+++|-.+|.|..+.-+-.+-. ............+|+.+++..+++. ++++
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDr---------------------------gsr~~~~~~~~~pITgL~~~~d~~s~lFv~ 190 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDR---------------------------GSRQDYSHRGKEPITGLALRSDGKSVLFVA 190 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhcc---------------------------ccceeeeccCCCCceeeEEecCCceeEEEE
Confidence 89999999999998853322110 1111222234578999999999887 3333
Q ss_pred cCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 237 AGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 237 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
+. ..|.+|.+.........+..|..+++|..|++....+ .++.+..+.+|+.
T Consensus 191 Tt-----------~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qf-----------------Ica~~e~l~fY~s 242 (933)
T KOG2114|consen 191 TT-----------EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQF-----------------ICAGSEFLYFYDS 242 (933)
T ss_pred ec-----------ceeEEEEecCCCcceeeeccCCccceeeecCCCCccE-----------------EEecCceEEEEcC
Confidence 33 4788898875442234477778889999999865322 2223346999999
Q ss_pred CCCCceEEEeccccccE
Q 010051 317 ESVPPIAILAGLHYAAI 333 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~i 333 (519)
....+...+..+|....
T Consensus 243 d~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 243 DGRGPCFAFEVGEKKEM 259 (933)
T ss_pred CCcceeeeecCCCeEEE
Confidence 87777777762255443
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.3e-07 Score=81.66 Aligned_cols=208 Identities=13% Similarity=0.134 Sum_probs=142.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--C-ceEEEecccccCeEEEEEcCCCCeEEEeeC-CCeEEEEecCCC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK--G-SVLQILDAHFHYVQGVAWDPLSKYVASLSS-DRTCRIYANRPT 177 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 177 (519)
|...|+.+... -.+++.+++.||.++.|--.. | +.+..+..|-..|.+++.+-++..+.+.+. |..++++|+...
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777766554 357899999999999998543 2 334556788889999999999999999777 999999999876
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCC--CeEEEecCCcceeeeecccceEEEE
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDG--SFLLVPAGSYKISSMSESINSAYIF 255 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~i~i~ 255 (519)
.......+.+.+ +.+ .+..++.. ..++++.. ..+.+.++
T Consensus 87 DminmiKL~~lP-----------------------------g~a-~wv~skGd~~s~IAVs~~---------~sg~i~Vv 127 (558)
T KOG0882|consen 87 DMINMIKLVDLP-----------------------------GFA-EWVTSKGDKISLIAVSLF---------KSGKIFVV 127 (558)
T ss_pred chhhhcccccCC-----------------------------Cce-EEecCCCCeeeeEEeecc---------cCCCcEEE
Confidence 544333332221 111 11112211 12333322 22678888
Q ss_pred eccCCCc-ccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC------C---------
Q 010051 256 SRKDLSR-PALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES------V--------- 319 (519)
Q Consensus 256 ~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~------~--------- 319 (519)
|-..... ......-|..+|.++.+.+.+.. +++....|.|.-|.... .
T Consensus 128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds----------------~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e 191 (558)
T KOG0882|consen 128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS----------------AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE 191 (558)
T ss_pred CCcCCcCccceecccccCceEEEEeeccccc----------------eeeccccceeEeecCCCcccCcccccccccccc
Confidence 8765543 33444568899999999998844 55555566888888762 1
Q ss_pred CceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccc
Q 010051 320 PPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGI 366 (519)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~ 366 (519)
.-+..+.. .....+++.|+|+|..+.+-+.|..|+++++.++++..
T Consensus 192 TdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 192 TDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred chhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 11112222 34667899999999999999999999999999887644
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.66 E-value=8.4e-06 Score=77.20 Aligned_cols=185 Identities=14% Similarity=-0.011 Sum_probs=110.6
Q ss_pred EcCCCCEEEEE-eCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC----CeEEEEecCCCCccccccc
Q 010051 111 WSTDGAFLLSG-SVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD----RTCRIYANRPTKSKGVEKM 185 (519)
Q Consensus 111 ~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~ 185 (519)
++|||+.+... -..+.+.+.|.++.+....+.-- +....+.++++++++++.+.+ .++...+.....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d------- 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD------- 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-------
Confidence 44566655332 23567788888877766655433 244677899999998877632 122222221110
Q ss_pred cceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccC----CC
Q 010051 186 NYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKD----LS 261 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~----~~ 261 (519)
.... +.... ..++.++|++..+. . +.|.++|... ..
T Consensus 272 ---~~vv-------------------fni~~------iea~vkdGK~~~V~--g----------n~V~VID~~t~~~~~~ 311 (635)
T PRK02888 272 ---WVVV-------------------FNIAR------IEEAVKAGKFKTIG--G----------SKVPVVDGRKAANAGS 311 (635)
T ss_pred ---eEEE-------------------EchHH------HHHhhhCCCEEEEC--C----------CEEEEEECCccccCCc
Confidence 0000 00000 01334577776652 1 4788888875 22
Q ss_pred cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc------------eEEEeccc
Q 010051 262 RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP------------IAILAGLH 329 (519)
Q Consensus 262 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~------------~~~~~~~~ 329 (519)
.....+ .-......+.++|||+++ ++++..++++.|+|+.+.+. +....-
T Consensus 312 ~v~~yI-PVGKsPHGV~vSPDGkyl---------------yVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-- 373 (635)
T PRK02888 312 ALTRYV-PVPKNPHGVNTSPDGKYF---------------IANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-- 373 (635)
T ss_pred ceEEEE-ECCCCccceEECCCCCEE---------------EEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--
Confidence 222222 233456789999999654 45555678999999987552 233322
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 330 YAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 330 ~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
...-...+|+++|....|.-.|..|..|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22334578999999888889999999999986
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-05 Score=69.96 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=71.9
Q ss_pred eeeccccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCC-CCeEEEeeCCCeEEEE
Q 010051 95 VLKNLSFHRKDVLDLQWSTDGA-FLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPL-SKYVASLSSDRTCRIY 172 (519)
Q Consensus 95 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 172 (519)
....+.+|...|..++|||... +|..++.+..|.|.|+++...+..+..+ ..+++++|.-+ .++|+.|...|.|.+|
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3446667889999999999776 7888999999999999999999988888 78999999865 4567788889999999
Q ss_pred ecCCCCc
Q 010051 173 ANRPTKS 179 (519)
Q Consensus 173 d~~~~~~ 179 (519)
|++..+.
T Consensus 264 D~R~~~~ 270 (463)
T KOG1645|consen 264 DMRQPEG 270 (463)
T ss_pred EccCCCc
Confidence 9998653
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.3e-05 Score=76.88 Aligned_cols=206 Identities=13% Similarity=0.112 Sum_probs=129.9
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccC-eEEEEEcCCCCeEEEeeCCC-----eEEEEecCCCCccccc
Q 010051 110 QWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY-VQGVAWDPLSKYVASLSSDR-----TCRIYANRPTKSKGVE 183 (519)
Q Consensus 110 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~ 183 (519)
+|++.+..++.|+.+|.|.+.+- +-+.++.+..+... |..+.......+|++.+.|+ .+++|++...+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 46688899999999999988873 44555778777776 44444333446788877765 489999987542211
Q ss_pred cccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEec---cCC
Q 010051 184 KMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSR---KDL 260 (519)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~---~~~ 260 (519)
..|...... .......-+.++.+++.+.+-+.+++|-.++ .|..+.- ++.
T Consensus 108 ---P~c~~~~ri--------------~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG----------~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 108 ---PQCLYEHRI--------------FTIKNPTNPSPASSLAVSEDLKTIVCGFTNG----------LVICYKGDILRDR 160 (933)
T ss_pred ---cceeeeeee--------------eccCCCCCCCcceEEEEEccccEEEEEecCc----------EEEEEcCcchhcc
Confidence 112210000 0001112356678899999989999988774 4444432 111
Q ss_pred CcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE-EeccccccEEEEEEc
Q 010051 261 SRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI-LAGLHYAAITDIAWS 339 (519)
Q Consensus 261 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~s 339 (519)
+...........+|+.+.+..++.. ++.+.+-..|.+|.+....+... +.. |+..++|.+|+
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s----------------~lFv~Tt~~V~~y~l~gr~p~~~~ld~-~G~~lnCss~~ 223 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKS----------------VLFVATTEQVMLYSLSGRTPSLKVLDN-NGISLNCSSFS 223 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCce----------------eEEEEecceeEEEEecCCCcceeeecc-CCccceeeecC
Confidence 2222233345678999999988854 22333335788999885443444 555 88899999998
Q ss_pred CCCCEEEEEeCCCcEEEEEecCC
Q 010051 340 NNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 340 ~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
+....|++++ +..+.+|+....
T Consensus 224 ~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 224 DGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred CCCccEEEec-CceEEEEcCCCc
Confidence 8766466554 467999987744
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.64 E-value=8e-06 Score=75.34 Aligned_cols=280 Identities=21% Similarity=0.298 Sum_probs=132.4
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccc------------
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH------------ 144 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------------ 144 (519)
+.+.|+|+.++ ....+......+....|||+|+.++... ++.|+++++.++...+.-...
T Consensus 23 ~~y~i~d~~~~-------~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwv 94 (353)
T PF00930_consen 23 GDYYIYDIETG-------EITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWV 94 (353)
T ss_dssp EEEEEEETTTT-------EEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HH
T ss_pred eeEEEEecCCC-------ceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCcccee
Confidence 34566666654 1222222256678899999999998885 588999998877544322111
Q ss_pred -----ccCeEEEEEcCCCCeEEEeeCC-CeEEEEec---CCCCc--cccccccc---------eeeEEEeccCcccccCC
Q 010051 145 -----FHYVQGVAWDPLSKYVASLSSD-RTCRIYAN---RPTKS--KGVEKMNY---------VCQHVITKAGQHSTDDS 204 (519)
Q Consensus 145 -----~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~---~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~~ 204 (519)
-+.-..+.|+||+++|+....| ..+..+.+ ..... .......+ ....++.......
T Consensus 95 yeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~---- 170 (353)
T PF00930_consen 95 YEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT---- 170 (353)
T ss_dssp HHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC----
T ss_pred ccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE----
Confidence 1123568899999999876654 33433332 22211 01110000 0000111100000
Q ss_pred ccccceee-ecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCC---CeEEEEEc
Q 010051 205 KSAKNHLF-HDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASK---PVVAVRFC 280 (519)
Q Consensus 205 ~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~---~v~~~~~s 280 (519)
....+. ........+..+.|.+++..+++...+. ......+.++|................ ......|.
T Consensus 171 --~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR-----~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 171 --TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNR-----DQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL 243 (353)
T ss_dssp --CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEET-----TSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-
T ss_pred --EEeeeccccCCCccCcccceecCCCcEEEEEEccc-----CCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc
Confidence 000000 0123356788999999999554432110 112234556666443221111111111 12233433
Q ss_pred -CCcccccccCCCCcccccceEEEEEecCC--eEEEEeCCCCCceEEEeccccccEEE-EEEcCCCCEEE-EEeCC--Cc
Q 010051 281 -PLAFNLRESNSAGFFKLPYRLIFAIATLN--SLYIYDTESVPPIAILAGLHYAAITD-IAWSNNARYLA-LSSQD--GY 353 (519)
Q Consensus 281 -p~~~~l~~~~~~g~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~-~~~~d--g~ 353 (519)
+++. .++.....+| +|++++...+... .+.. ..-.|+. +.|+++++.|. ++..+ +.
T Consensus 244 ~~~~~---------------~~l~~s~~~G~~hly~~~~~~~~~~-~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 244 GPDGN---------------EFLWISERDGYRHLYLYDLDGGKPR-QLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGE 306 (353)
T ss_dssp TTTSS---------------EEEEEEETTSSEEEEEEETTSSEEE-ESS--SSS-EEEEEEEECTSSEEEEEESSGGTTS
T ss_pred cCCCC---------------EEEEEEEcCCCcEEEEEccccccee-cccc-CceeecccceEcCCCCEEEEEecCCCCCc
Confidence 4442 3444444554 5666777666533 3333 3556755 67888877554 45442 34
Q ss_pred EEEEEecCCcccceeeecCCcccccCCC-CcccccCCccEEEeec
Q 010051 354 CTLVEFENDELGIPISLSGNKVSKDENK-SPLVTKSEDMIIEAST 397 (519)
Q Consensus 354 i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~l~~~~ 397 (519)
-.||.+.-...+....+... ... ..+.|||++++++...
T Consensus 307 r~lY~v~~~~~~~~~~LT~~-----~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 307 RHLYRVSLDSGGEPKCLTCE-----DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp BEEEEEETTETTEEEESSTT-----SSTTEEEEE-TTSSEEEEEE
T ss_pred eEEEEEEeCCCCCeEeccCC-----CCCceEEEECCCCCEEEEEE
Confidence 44444433311122222222 222 4899999998887544
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.62 E-value=0.0001 Score=69.39 Aligned_cols=278 Identities=10% Similarity=0.045 Sum_probs=144.2
Q ss_pred CCEEEEEcCCCcEEEEEecCCccccccccccccccccc------cCcce---eEEEEccCCCeEEEEEcccCCCccccee
Q 010051 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSY------HGSAI---NILRFSPCGGELIIWKLHTTETGQAWKV 95 (519)
Q Consensus 25 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~v---~~~~~~~~~~~i~vw~~~~~~~~~~~~~ 95 (519)
+..+++++.+|.+.-+|..+|+.+-+.........+.. ....+ ..+-+...++.|.-+|..+++.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~------ 142 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV------ 142 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC------
Confidence 56777778889999999999987766543221000000 00000 1233444578888899887732
Q ss_pred eeccccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCe-----EEEEEcCCCCeEEEeeCCCeE
Q 010051 96 LKNLSFHRKDVL-DLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYV-----QGVAWDPLSKYVASLSSDRTC 169 (519)
Q Consensus 96 ~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~~~dg~i 169 (519)
+....... .+. .... .+..++.+..++.|..+|..+|+.+..+......+ ..... .+..++.++.+|.+
T Consensus 143 ~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v 217 (394)
T PRK11138 143 AWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRV 217 (394)
T ss_pred cccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEE
Confidence 22222111 111 1112 24567778889999999999999887665321111 11111 13456777788999
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc--CCCeEEEecCCcceeeeec
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP--DGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~~~~~~~~~~ 247 (519)
..+|..+++..-....... .+.. .. .....+..+| .+..+++++.+
T Consensus 218 ~a~d~~~G~~~W~~~~~~~-------~~~~----------~~-------~~~~~~~~sP~v~~~~vy~~~~~-------- 265 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQP-------TGAT----------EI-------DRLVDVDTTPVVVGGVVYALAYN-------- 265 (394)
T ss_pred EEEEccCChhhheeccccC-------CCcc----------ch-------hcccccCCCcEEECCEEEEEEcC--------
Confidence 9999888764221111000 0000 00 0000000111 13344444444
Q ss_pred ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 248 SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
+.++.+|..+....-..-.+ ....+... ...++.++.+|.+..+|..+++.+-....
T Consensus 266 --g~l~ald~~tG~~~W~~~~~---~~~~~~~~------------------~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 266 --GNLVALDLRSGQIVWKREYG---SVNDFAVD------------------GGRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred --CeEEEEECCCCCEEEeecCC---CccCcEEE------------------CCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 35555555433211110000 00001111 14677888899999999999876544322
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeee
Q 010051 328 LHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISL 370 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 370 (519)
.......+... .+.+|+.++.||.|.++|..+++......+
T Consensus 323 ~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 323 LLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 01111222222 245778889999999999998875544433
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2e-07 Score=79.16 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=106.2
Q ss_pred EEecC--CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC---------CCeEEEEEcccCC
Q 010051 20 DFHPI--SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC---------GGELIIWKLHTTE 88 (519)
Q Consensus 20 ~~sp~--~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~i~vw~~~~~~ 88 (519)
+|+-+ |-. ++.+.+..|-+-|+++|-... +. ....|.++.|... .|.|..+|++...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qs----------f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS----------FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccc----------cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 56543 223 444456678888998875322 11 3344555444442 5899999999876
Q ss_pred CcccceeeeccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCce---EEEecccccCeEEEEE--cCCCCeEEE
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSV---LQILDAHFHYVQGVAW--DPLSKYVAS 162 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~l~~ 162 (519)
.+..|....-+ |.+.|+++..-. ++++|++.+.+|.|.+||++--++ +..+.+|...-.-+-+ .+....+++
T Consensus 286 qG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 286 QGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred cCCCcceEEEE--cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE
Confidence 66555443332 889999998777 788999999999999999987666 8888888654443333 466678889
Q ss_pred eeCCCeEEEEecCCCCccccccc
Q 010051 163 LSSDRTCRIYANRPTKSKGVEKM 185 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~ 185 (519)
++.|...+||.++.+........
T Consensus 364 ~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccCeeEEEEEecccCceeeccCC
Confidence 99999999999998765443333
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.55 E-value=1.3e-05 Score=70.03 Aligned_cols=277 Identities=17% Similarity=0.155 Sum_probs=136.7
Q ss_pred CcEEEEEecCCccccccccccccccccccCcceeEEEEccCC-------------------CeEEEEEcccCCCccccee
Q 010051 35 YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG-------------------GELIIWKLHTTETGQAWKV 95 (519)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~i~vw~~~~~~~~~~~~~ 95 (519)
+.++|+|..+++.+-.++.. -.-.+..+|++ ..|.+||..+.........
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i 85 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI 85 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeecc-----------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec
Confidence 46888998888765544321 11224455554 4566888877632211111
Q ss_pred ee--ccccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 96 LK--NLSFHRKDVLDLQWSTDGAFLLSGSV--DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 96 ~~--~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
.. +.. .......++++.||++++.... -..|.|.|+..++.+..+..- + ...+-=++ .+.|.+.+.||.+.-
T Consensus 86 P~k~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~-~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 86 PPKPRAQ-VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSG-NRGFSMLCGDGSLLT 161 (342)
T ss_dssp TTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEE-TTEEEEEETTSCEEE
T ss_pred CCcchhe-ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecC-CCceEEEecCCceEE
Confidence 10 000 0112234688899998887644 467999999999988877543 2 22221122 345888888999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
..+......... ....+...... .+..-+++..+..++..+-. +.
T Consensus 162 v~Ld~~Gk~~~~-----~t~~F~~~~dp--------------------~f~~~~~~~~~~~~~F~Sy~----------G~ 206 (342)
T PF06433_consen 162 VTLDADGKEAQK-----STKVFDPDDDP--------------------LFEHPAYSRDGGRLYFVSYE----------GN 206 (342)
T ss_dssp EEETSTSSEEEE-----EEEESSTTTS---------------------B-S--EEETTTTEEEEEBTT----------SE
T ss_pred EEECCCCCEeEe-----eccccCCCCcc--------------------cccccceECCCCeEEEEecC----------CE
Confidence 988843221100 01111111111 11122333333333323333 34
Q ss_pred EEEEeccCCCcccc-cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec---C-------CeEEEEeCCCCC
Q 010051 252 AYIFSRKDLSRPAL-QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT---L-------NSLYIYDTESVP 320 (519)
Q Consensus 252 i~i~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~---d-------~~i~vwd~~~~~ 320 (519)
++-.++........ ...-....-..-.|-|.|..+++..... +.++.... + ..|.+||+.+++
T Consensus 207 v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~------~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 207 VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS------GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT------TEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred EEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc------CeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 44444332210000 0000000000012333333322222111 12222111 1 268899999999
Q ss_pred ceEEEeccccccEEEEEEcCCCC-EEEEE-eCCCcEEEEEecCCcccceee
Q 010051 321 PIAILAGLHYAAITDIAWSNNAR-YLALS-SQDGYCTLVEFENDELGIPIS 369 (519)
Q Consensus 321 ~~~~~~~~~~~~i~~~~~s~~g~-~l~~~-~~dg~i~vwd~~~~~~~~~~~ 369 (519)
.+..+.. ..++.+|..+.+.+ +|++. ..++.|.+||..+++....+.
T Consensus 281 rv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 281 RVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9999985 45688999999876 56544 457899999999987655544
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=4.3e-05 Score=66.58 Aligned_cols=220 Identities=15% Similarity=0.049 Sum_probs=119.2
Q ss_pred CCeEEEEEcccCCCcccceeeecccc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSF--HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
++.|..||..++ +.+....- ......+.. .+++.++++++.++.|+.||..+|+.+..+... ..+....
T Consensus 2 ~g~l~~~d~~tG------~~~W~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~- 72 (238)
T PF13360_consen 2 DGTLSALDPRTG------KELWSYDLGPGIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP- 72 (238)
T ss_dssp TSEEEEEETTTT------EEEEEEECSSSCSSEEETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-
T ss_pred CCEEEEEECCCC------CEEEEEECCCCCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-
Confidence 577888888776 33333321 112222222 235777888889999999999999988776542 2211111
Q ss_pred cCCCCeEEEeeCCCeEEEEecCCCCccccc-cccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 154 DPLSKYVASLSSDRTCRIYANRPTKSKGVE-KMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 154 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
...+..+++++.++.|..+|..+++..-.. ... .........+....++..
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 124 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS----------------------------SPPAGVRSSSSPAVDGDR 124 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-S----------------------------SCTCSTB--SEEEEETTE
T ss_pred eecccccccccceeeeEecccCCcceeeeecccc----------------------------ccccccccccCceEecCE
Confidence 223566777778889999998888642110 000 000001112223333666
Q ss_pred EEEecCCcceeeeecccceEEEEeccCCCccccc-CCCCC--CCe-------EEEEEcCCcccccccCCCCcccccceEE
Q 010051 233 LLVPAGSYKISSMSESINSAYIFSRKDLSRPALQ-LPGAS--KPV-------VAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~--~~v-------~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
++++... +.++.+|..++...... ..... ..+ ..+.+. + ..+
T Consensus 125 ~~~~~~~----------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~v 176 (238)
T PF13360_consen 125 LYVGTSS----------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D-----------------GRV 176 (238)
T ss_dssp EEEEETC----------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T-----------------TEE
T ss_pred EEEEecc----------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C-----------------CEE
Confidence 7766655 45666665543221111 11100 011 111111 1 246
Q ss_pred EEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcc
Q 010051 303 FAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDEL 364 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~ 364 (519)
+.+..++.+..+|+.+++.+.... ...+.. ....++..|++++.++.|..||+.+++.
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEECCTSSEEEEETTTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred EEEcCCCeEEEEECCCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 666666654444999998663222 222222 1446777888888999999999998854
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.49 E-value=0.00014 Score=67.45 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=64.3
Q ss_pred CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEE
Q 010051 269 GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALS 348 (519)
Q Consensus 269 ~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 348 (519)
.....+.+++++|+. ..++.|+.||.|.+||...+..... . ..-..+.++|+|+|.++++|
T Consensus 257 pL~s~v~~ca~sp~E----------------~kLvlGC~DgSiiLyD~~~~~t~~~--k-a~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSE----------------DKLVLGCEDGSIILYDTTRGVTLLA--K-AEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCccc----------------ceEEEEecCCeEEEEEcCCCeeeee--e-ecccceEEEEcCCCcEEEEE
Confidence 466789999999987 6789999999999999876643322 2 45668899999999999999
Q ss_pred eCCCcEEEEEecCCccc
Q 010051 349 SQDGYCTLVEFENDELG 365 (519)
Q Consensus 349 ~~dg~i~vwd~~~~~~~ 365 (519)
+..|.+.+||+.-..+.
T Consensus 318 s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 318 SEQGELQCFDMALSPIK 334 (545)
T ss_pred cCCceEEEEEeecCccc
Confidence 99999999999765443
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=4.3e-06 Score=79.45 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=123.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGV 182 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 182 (519)
...+.|++++ +++|+.|+.+|.|++++. .+.. .+...|+.. ..+|.++++|+.||.+.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEec-CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567788887 789999999999999997 4444 444445443 56799999999999999998877653211
Q ss_pred ccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccC-----CCeEEEecCCcceeeeecccceEEEEec
Q 010051 183 EKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPD-----GSFLLVPAGSYKISSMSESINSAYIFSR 257 (519)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~-----g~~l~~~~~~~~~~~~~~~~~~i~i~~~ 257 (519)
..+..++.+++++|+ .+.+++|+.. | +.++..
T Consensus 109 --------------------------------~df~rpiksial~Pd~~~~~sk~fv~GG~a----------g-lvL~er 145 (846)
T KOG2066|consen 109 --------------------------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMA----------G-LVLSER 145 (846)
T ss_pred --------------------------------EecCCcceeEEeccchhhhhhhheeecCcc----------e-EEEehh
Confidence 123466789999998 5666665544 3 555544
Q ss_pred cCCCccc-ccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccc-----
Q 010051 258 KDLSRPA-LQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYA----- 331 (519)
Q Consensus 258 ~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~----- 331 (519)
+-.+... ..+....++|.++.|.-+ +++-..|--|+|||+.+.+.+..+...+..
T Consensus 146 ~wlgnk~~v~l~~~eG~I~~i~W~g~-------------------lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~ 206 (846)
T KOG2066|consen 146 NWLGNKDSVVLSEGEGPIHSIKWRGN-------------------LIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPEL 206 (846)
T ss_pred hhhcCccceeeecCccceEEEEecCc-------------------EEEEecCCCcEEEeccccceeeccCCCCCCCCccc
Confidence 3222211 235566789999999742 344444444999999998888777653321
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 332 AITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 332 ~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
.-..+.|.++.++ +. |...+|+|..+..
T Consensus 207 fpphl~W~~~~~L-VI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 207 FPPHLHWQDEDRL-VI-GWGDSVKICSIKK 234 (846)
T ss_pred CCCceEecCCCeE-EE-ecCCeEEEEEEec
Confidence 1235788777654 33 3556799988873
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=0.0003 Score=65.03 Aligned_cols=278 Identities=13% Similarity=0.145 Sum_probs=140.0
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccC---------cceeEEEEccCCCeEEEEE
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHG---------SAINILRFSPCGGELIIWK 83 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~i~vw~ 83 (519)
...+....|||+|+.+|... ++.|++++..++...+ +........+.+-. +.-..+.|||++..|.++.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 56788999999999999885 5789999887774332 22111111111111 2235789999999999988
Q ss_pred cccCCCcccceeeeccccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEE--Ee---cccccCeEEEEEcCC
Q 010051 84 LHTTETGQAWKVLKNLSFHR--KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQ--IL---DAHFHYVQGVAWDPL 156 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~---~~h~~~v~~~~~~~~ 156 (519)
+...... .+........+. -.+..+.+-.-|.--. .-.+.|+|+.+++... .. ..-...+..+.|.++
T Consensus 120 ~d~~~v~-~~~~~~~~~~~~~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d 194 (353)
T PF00930_consen 120 FDEREVP-EYPLPDYSPPDSQYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD 194 (353)
T ss_dssp EE-TTS--EEEEEEESSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET
T ss_pred ECCcCCc-eEEeeccCCccccCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC
Confidence 7654221 111111111111 1344444433332221 1247789998886532 11 233457889999999
Q ss_pred CCeEEEe--eCCC---eEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc-cCC
Q 010051 157 SKYVASL--SSDR---TCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS-PDG 230 (519)
Q Consensus 157 ~~~l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-p~g 230 (519)
++.|+.. ..+. .+.++|..++........ .. ...-.......|. +++
T Consensus 195 ~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e---------~~------------------~~Wv~~~~~~~~~~~~~ 247 (353)
T PF00930_consen 195 GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE---------TS------------------DGWVDVYDPPHFLGPDG 247 (353)
T ss_dssp TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE---------ES------------------SSSSSSSSEEEE-TTTS
T ss_pred CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe---------cC------------------CcceeeecccccccCCC
Confidence 8844433 3322 356667765442211100 00 0000111234443 666
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeE-EEEEcCCcccccccCCCCcccccceEEEEEec--
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVV-AVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT-- 307 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~-- 307 (519)
..++..+... ....+++++.... ....+....-.|. .+.+++++..+ .+++..
T Consensus 248 ~~~l~~s~~~-------G~~hly~~~~~~~--~~~~lT~G~~~V~~i~~~d~~~~~i---------------yf~a~~~~ 303 (353)
T PF00930_consen 248 NEFLWISERD-------GYRHLYLYDLDGG--KPRQLTSGDWEVTSILGWDEDNNRI---------------YFTANGDN 303 (353)
T ss_dssp SEEEEEEETT-------SSEEEEEEETTSS--EEEESS-SSS-EEEEEEEECTSSEE---------------EEEESSGG
T ss_pred CEEEEEEEcC-------CCcEEEEEccccc--ceeccccCceeecccceEcCCCCEE---------------EEEecCCC
Confidence 6555543321 1246677776543 2345555555664 46778876543 333333
Q ss_pred --CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEe
Q 010051 308 --LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSS 349 (519)
Q Consensus 308 --d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 349 (519)
...|+.-++..+..+..+.. ....-..+.|||+|++++..+
T Consensus 304 p~~r~lY~v~~~~~~~~~~LT~-~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKCLTC-EDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTSBEEEEEETTETTEEEESST-TSSTTEEEEE-TTSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCeEeccC-CCCCceEEEECCCCCEEEEEE
Confidence 23566667762333344443 222226899999999887654
No 325
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.42 E-value=0.00027 Score=63.28 Aligned_cols=256 Identities=9% Similarity=0.022 Sum_probs=104.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEc--CCCCeEEEeeCCCeEEEEecCCCCcccc--cc
Q 010051 109 LQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD--PLSKYVASLSSDRTCRIYANRPTKSKGV--EK 184 (519)
Q Consensus 109 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~ 184 (519)
..++++++.|+-......|+-.|+++.+....+......+-...|. .++..++-.-.... -|..... .... ..
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~-~~~f~e~~ 162 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTK-WKGFREFY 162 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----S-HHHHHHHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccc-cHHHHHHH
Confidence 5566877877766666788899999887666665555555445553 34444432211100 0000000 0000 00
Q ss_pred ccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCccc
Q 010051 185 MNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPA 264 (519)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 264 (519)
.......++... ........+. .-...+..+.|+|....+++=+..+.. ..- .-+||-++..+...
T Consensus 163 ~a~p~~~i~~id-------l~tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEGpw---~~V--d~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 163 EARPHCRIFTID-------LKTGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEGPW---DLV--DQRIWTINTDGSNV 228 (386)
T ss_dssp HC---EEEEEEE-------TTT--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S-T---TTS--S-SEEEEETTS---
T ss_pred hhCCCceEEEEE-------CCCCceeEEE--ecCccccCcccCCCCCCEEEEeccCCc---cee--ceEEEEEEcCCCcc
Confidence 000001111000 0000111111 123456688899965555443322110 011 12344444333333
Q ss_pred ccCCCC--CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCC
Q 010051 265 LQLPGA--SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNA 342 (519)
Q Consensus 265 ~~~~~~--~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g 342 (519)
..+..+ ...+..=-|.|||..+.. ....-++.+..|.-+|+.+++...... ......+.-++||
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y-----------~~~~~~~~~~~i~~~d~~t~~~~~~~~---~p~~~H~~ss~Dg 294 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWY-----------DSYTPGGQDFWIAGYDPDTGERRRLME---MPWCSHFMSSPDG 294 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEE-----------EEEETTT--EEEEEE-TTT--EEEEEE---E-SEEEEEE-TTS
T ss_pred eeeecCCCCcccccccccCCCCEEEE-----------EeecCCCCceEEEeeCCCCCCceEEEe---CCceeeeEEcCCC
Confidence 333332 234555679999976521 111112234467778888876644332 3356677888999
Q ss_pred CEEEEEeCCC----------------cEEEEEecCCcccceeeecCCcc-------cccCCCCcccccCCccEEEeecC
Q 010051 343 RYLALSSQDG----------------YCTLVEFENDELGIPISLSGNKV-------SKDENKSPLVTKSEDMIIEASTN 398 (519)
Q Consensus 343 ~~l~~~~~dg----------------~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~~~~ 398 (519)
++++-=+.|. -|+++++..+.... +..|.. .....-..+.|||||++++..++
T Consensus 295 ~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~---l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 295 KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK---LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp SEEEEEE-------------------EEEEEETTTTEEEE---EEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred CEEEecCCCCCccccccccceecCCcEEEEeccccCceee---eeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 9887644442 35566665543321 111110 00112356889999999988774
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.38 E-value=2.3e-05 Score=73.01 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=118.6
Q ss_pred eccccCCCCeEEEEEcCCCCEEEEEe---CC-CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEe-eCCCe--E
Q 010051 97 KNLSFHRKDVLDLQWSTDGAFLLSGS---VD-NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASL-SSDRT--C 169 (519)
Q Consensus 97 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~--i 169 (519)
..+......+..-+|+|++..++..+ .. ..++++++.+++....+. ..+.-...+|+|||+.|+.+ ..||. |
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 33444556677889999998766543 23 469999999987655443 22333567899999987654 45666 5
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
.++|+......... ...+.-..-.|+|||++++..+.... .
T Consensus 265 y~~dl~~~~~~~Lt--------------------------------~~~gi~~~Ps~spdG~~ivf~Sdr~G-------~ 305 (425)
T COG0823 265 YLMDLDGKNLPRLT--------------------------------NGFGINTSPSWSPDGSKIVFTSDRGG-------R 305 (425)
T ss_pred EEEcCCCCcceecc--------------------------------cCCccccCccCCCCCCEEEEEeCCCC-------C
Confidence 55566655421100 01111226789999999999876532 1
Q ss_pred ceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCC--eEEEEeCCCCCceEEEec
Q 010051 250 NSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLN--SLYIYDTESVPPIAILAG 327 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~ 327 (519)
..|++++.........+.... .-..-.|+|||.+++. ....+| .|.+.|+.++.....+.
T Consensus 306 p~I~~~~~~g~~~~riT~~~~--~~~~p~~SpdG~~i~~---------------~~~~~g~~~i~~~~~~~~~~~~~lt- 367 (425)
T COG0823 306 PQIYLYDLEGSQVTRLTFSGG--GNSNPVWSPDGDKIVF---------------ESSSGGQWDIDKNDLASGGKIRILT- 367 (425)
T ss_pred cceEEECCCCCceeEeeccCC--CCcCccCCCCCCEEEE---------------EeccCCceeeEEeccCCCCcEEEcc-
Confidence 367777776544333333222 2227788999966532 222233 37777777666544443
Q ss_pred cccccEEEEEEcCCCCEEEEEeCC
Q 010051 328 LHYAAITDIAWSNNARYLALSSQD 351 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~~l~~~~~d 351 (519)
+........|.++|+.++..+.-
T Consensus 368 -~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 368 -STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred -ccccCCCCCcCCCCceEEEeccC
Confidence 24445567889999887765543
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00013 Score=63.95 Aligned_cols=268 Identities=13% Similarity=0.100 Sum_probs=136.8
Q ss_pred EEEEecCCCEEEEEc----------CCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccC
Q 010051 18 TLDFHPISGLLATGG----------ADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTT 87 (519)
Q Consensus 18 ~~~~sp~~~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~ 87 (519)
.+..|||++.+++++ ..-.|.+||..+-.....+..+.....+ .....+.++++.+|+.+.|+++.-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--VVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--ecccccceEEccCCcEEEEEccCCC
Confidence 366899999887653 2346999999998877766543211111 1123345688899988888887533
Q ss_pred CCcc-----cceeeeccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcC-CCceEEEe----cccccCe-EEEEEcC
Q 010051 88 ETGQ-----AWKVLKNLSFHRKDVLDLQWSTD-GAFLLSGSVDNSCIIWDVN-KGSVLQIL----DAHFHYV-QGVAWDP 155 (519)
Q Consensus 88 ~~~~-----~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~h~~~v-~~~~~~~ 155 (519)
.... .-+.+..+. ...+.. .| |. .+.+.+-+.||.+....+. .|+..+.. .....++ ..-++..
T Consensus 118 ~SVtVVDl~~~kvv~ei~--~PGC~~-iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEID--TPGCWL-IY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEEETTTTEEEEEEE--GTSEEE-EE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred CeEEEEECCCCceeeeec--CCCEEE-EE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 1100 002222221 111222 22 32 2457778889999998887 45554221 1111222 2334445
Q ss_pred CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEE
Q 010051 156 LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLV 235 (519)
Q Consensus 156 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 235 (519)
.+..++..+.+|.|+--|+......... .+.... ......-|. ++...-+++++....|++
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~--------~~~~~t-------~~e~~~~Wr----PGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGK--------PWSLLT-------DAEKADGWR----PGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEE--------EEESS--------HHHHHTTEE----E-SSS-EEEETTTTEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccC--------cccccC-------ccccccCcC----CcceeeeeeccccCeEEE
Confidence 5556666788999999888776421111 000000 000000111 223345778776666655
Q ss_pred ecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEE-ecCCeEEEE
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAI-ATLNSLYIY 314 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~-~~d~~i~vw 314 (519)
....+...........|++||+.+..+ +..+.- ..++.+|..+.+.+ .+|++. ..++.|.+|
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~---------------P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDK---------------PLLYALSAGDGTLDVY 317 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS----------------EEEEEETTTTEEEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCC---------------cEEEEEcCCCCeEEEE
Confidence 432222111122224678888865432 333321 23466788877653 245544 457899999
Q ss_pred eCCCCCceEEEec
Q 010051 315 DTESVPPIAILAG 327 (519)
Q Consensus 315 d~~~~~~~~~~~~ 327 (519)
|..+|+.+..+..
T Consensus 318 D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 318 DAATGKLVRSIEQ 330 (342)
T ss_dssp ETTT--EEEEE--
T ss_pred eCcCCcEEeehhc
Confidence 9999999988875
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=3.8e-05 Score=71.56 Aligned_cols=210 Identities=15% Similarity=0.109 Sum_probs=127.6
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC---C-CeEEEEecCCCCccccccccceeeEEEeccCccc
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS---D-RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHS 200 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (519)
..+.+=|.. |...+.+......+..-.|+|+++.++..+. . ..+.++++.+++......
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------------- 235 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------------- 235 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----------------
Confidence 345555543 5555556555567788899999987654422 2 358888988876432222
Q ss_pred ccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEc
Q 010051 201 TDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFC 280 (519)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~s 280 (519)
..+.-...+|+|||+.|+.+.... ....++++|+.... ...+....+.-..-.|+
T Consensus 236 ----------------~~g~~~~P~fspDG~~l~f~~~rd-------g~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~s 290 (425)
T COG0823 236 ----------------FNGNNGAPAFSPDGSKLAFSSSRD-------GSPDIYLMDLDGKN--LPRLTNGFGINTSPSWS 290 (425)
T ss_pred ----------------cCCccCCccCCCCCCEEEEEECCC-------CCccEEEEcCCCCc--ceecccCCccccCccCC
Confidence 122233578999999999887653 22478888887654 22344444444477899
Q ss_pred CCcccccccCCCCcccccceEEEEEecCC--eEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC-Cc--EE
Q 010051 281 PLAFNLRESNSAGFFKLPYRLIFAIATLN--SLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD-GY--CT 355 (519)
Q Consensus 281 p~~~~l~~~~~~g~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~--i~ 355 (519)
|||++++.. ....| .|.++++..+........ ...-..-.|||||++|+..+.. |. |.
T Consensus 291 pdG~~ivf~---------------Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 291 PDGSKIVFT---------------SDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred CCCCEEEEE---------------eCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence 999776433 33333 577777776655333332 2333378999999999887743 44 55
Q ss_pred EEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCc
Q 010051 356 LVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 356 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 400 (519)
+.++.++.....+.. ........|.+++..+...+...
T Consensus 354 ~~~~~~~~~~~~lt~-------~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 354 KNDLASGGKIRILTS-------TYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EeccCCCCcEEEccc-------cccCCCCCcCCCCceEEEeccCC
Confidence 555555432111111 22345667888888887766543
No 329
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=2.1e-06 Score=73.12 Aligned_cols=165 Identities=12% Similarity=0.056 Sum_probs=112.1
Q ss_pred EEEcCC--CCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccccccc
Q 010051 109 LQWSTD--GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMN 186 (519)
Q Consensus 109 ~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 186 (519)
++|+-+ |-+ ++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+++++.|...|.|..+|++.......
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~---- 289 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG---- 289 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----
Confidence 356532 334 4556677899999988854 3444 567899999998899999999999999999998632111
Q ss_pred ceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc-CCCeEEEecCCcceeeeecccceEEEEeccCCCc--c
Q 010051 187 YVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR--P 263 (519)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--~ 263 (519)
......-|.+.|+++..-. ++++|.+..-+ +.|.+||.+-... .
T Consensus 290 -----------------------~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~----------gkikLyD~R~~K~~~~ 336 (425)
T KOG2695|consen 290 -----------------------WCAQRLYHDSSVTSLQILQFSQQKLMASDMT----------GKIKLYDLRATKCKKS 336 (425)
T ss_pred -----------------------cceEEEEcCcchhhhhhhccccceEeeccCc----------CceeEeeehhhhcccc
Confidence 1111123456677777666 67777775444 7999999975432 2
Q ss_pred cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 264 ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 264 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
+..+.+|...-..+-++-+. ....+++++.|-..+||.++.+..+.+++.
T Consensus 337 V~qYeGHvN~~a~l~~~v~~--------------eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 337 VMQYEGHVNLSAYLPAHVKE--------------EEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeeeeccccccccccccccc--------------ccceEEEccCeeEEEEEecccCceeeccCC
Confidence 55566664433322222111 116788999999999999999998888765
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.31 E-value=0.0014 Score=61.59 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=38.4
Q ss_pred eEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 126 SCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 126 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
.|.+|+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+...
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 5888885 67777666444488999999875 55667778999999998744
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.00049 Score=69.24 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=72.1
Q ss_pred EEEEEcCCCCeEEEee----CC-CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeE
Q 010051 149 QGVAWDPLSKYVASLS----SD-RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRR 223 (519)
Q Consensus 149 ~~~~~~~~~~~l~~~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 223 (519)
+.+.|.-||+++++.. .+ ..|++||-. +....... ...+.-.+
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-------------------------------~~~~l~~~ 246 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE-------------------------------PVEGLQHS 246 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC-------------------------------cccccccc
Confidence 4689999999998732 23 789999977 32211110 00112237
Q ss_pred EEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcc--cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceE
Q 010051 224 LAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRP--ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRL 301 (519)
Q Consensus 224 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~ 301 (519)
++|-|.|..+++..... +.+.|.+|..+..... ...++.....+..++|+.++..|+....
T Consensus 247 LsWkPsgs~iA~iq~~~-------sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~---------- 309 (1265)
T KOG1920|consen 247 LSWKPSGSLIAAIQCKT-------SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTS---------- 309 (1265)
T ss_pred eeecCCCCeEeeeeecC-------CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeec----------
Confidence 99999999998865432 2246888876544322 2223344455899999999877654221
Q ss_pred EEEEecCCeEEEEeCCCC
Q 010051 302 IFAIATLNSLYIYDTESV 319 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~ 319 (519)
......|++|-+.+.
T Consensus 310 ---~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 310 ---NLENSLVQLWTTGNY 324 (1265)
T ss_pred ---ccccceEEEEEecCe
Confidence 222334777776653
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=9.3e-05 Score=70.75 Aligned_cols=147 Identities=13% Similarity=0.211 Sum_probs=100.6
Q ss_pred CCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCccc
Q 010051 13 TKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQA 92 (519)
Q Consensus 13 ~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~ 92 (519)
...++|++++ ++.|+.|+-+|.|++++....- ...+. ..-. ...-.-++-.++||+|.|-.+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~-----~s~~--~~~Gey~asCS~DGkv~I~sl~~~~---- 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD-----HSSS--ILEGEYVASCSDDGKVVIGSLFTDD---- 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc-----cccc--ccCCceEEEecCCCcEEEeeccCCc----
Confidence 3567788887 7899999999999999876442 11111 0001 1122346667789999998887663
Q ss_pred ceeeeccccCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEEcCC-Cce-EEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 93 WKVLKNLSFHRKDVLDLQWSTD-----GAFLLSGSVDNSCIIWDVNK-GSV-LQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~vwd~~~-~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
....+. ...++.+++++|+ .+++++|+.-| +.++.-+= |.. ...+....++|.++.|. |+++|-++.
T Consensus 105 --~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 105 --EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred --cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 222222 3567899999997 56899999988 77776431 111 12355667899999997 789999887
Q ss_pred CCeEEEEecCCCCcc
Q 010051 166 DRTCRIYANRPTKSK 180 (519)
Q Consensus 166 dg~i~iwd~~~~~~~ 180 (519)
+| |++||+...+..
T Consensus 179 ~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRL 192 (846)
T ss_pred CC-cEEEecccccee
Confidence 77 899999887643
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=0.0015 Score=54.09 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=79.8
Q ss_pred CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcce-eEEEEccCCCeEEEEEcccCCCcccceeeeccccCCC
Q 010051 26 GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAI-NILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRK 104 (519)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 104 (519)
.+++.|+-.+.+.--|..+|+...+...... +....--| ..+....-.|.+++.+.+++.. ...+.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~R---iE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~------~w~f~~~~~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVR---IECSAIVVGDFVVLGCYSGGLYFLCVKTGSQ------IWNFVILET 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCce---eeeeeEEECCEEEEEEccCcEEEEEecchhh------eeeeeehhh
Confidence 4677788888888888888876543221110 00000000 1133444467888888887732 222221111
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEec
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 174 (519)
-=......+++..++.|+.|++.+..|..+..++...+...+...+-+..|-...|+.+...|.+.--..
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 1122345678999999999999999999998888776654444444555663334444444554443333
No 334
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=0.0023 Score=54.00 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=77.5
Q ss_pred CccccccccccccccccccCcceeEEEEccC-CCeEEEEEcccCCCccccee--eeccccCCCCeEEEEEcCCCCEEEEE
Q 010051 45 GEKQKKIPTASYQNSLSYHGSAINILRFSPC-GGELIIWKLHTTETGQAWKV--LKNLSFHRKDVLDLQWSTDGAFLLSG 121 (519)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~i~vw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~ 121 (519)
|+++..+..+...+.+..|+..-..++|... +....++|............ -+.+.+| -.|||||.+|+..
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYAT 131 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYAT 131 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEee
Confidence 3444444444445556667777788888766 45567888876643221110 1112233 3799999999876
Q ss_pred eC-----CCeEEEEEcCCC-ceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEE
Q 010051 122 SV-----DNSCIIWDVNKG-SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIY 172 (519)
Q Consensus 122 ~~-----dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 172 (519)
-. -|.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.|+.+. |-|..-
T Consensus 132 Endfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 132 ENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred cCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 43 378999998754 44567778877778899999999988763 444443
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.21 E-value=0.0029 Score=61.30 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCcEEEEEecCCccccccccccc-cc---cccccCcce---eEEEEccCCCeEEEEEcccCCCcccceeee
Q 010051 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASY-QN---SLSYHGSAI---NILRFSPCGGELIIWKLHTTETGQAWKVLK 97 (519)
Q Consensus 25 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~~~~~~~~v---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~ 97 (519)
+..++.++.++.|+-.|..+|+.+-....... .. .+....-.+ ..+.+...++.|+-+|..+++ .+-
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~------~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGK------QVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCC------Eee
Confidence 44566777789999999999987766543221 00 000000001 234455567888888988873 332
Q ss_pred ccccCCC--CeEEEEEcC--CCCEEEEEe---------CCCeEEEEEcCCCceEEEecc
Q 010051 98 NLSFHRK--DVLDLQWST--DGAFLLSGS---------VDNSCIIWDVNKGSVLQILDA 143 (519)
Q Consensus 98 ~~~~~~~--~v~~~~~s~--~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~ 143 (519)
....... .-..+.-+| .+..++.++ .++.|..+|..+|+.+-.+..
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred eecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 2221111 000111111 124455553 368899999999998776643
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.0004 Score=64.57 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=78.0
Q ss_pred CCeEEEEEcC-CCCEEEEE----eCCCe----EEEEEcCCCceEEE---ecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 104 KDVLDLQWST-DGAFLLSG----SVDNS----CIIWDVNKGSVLQI---LDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 104 ~~v~~~~~s~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
....++.||. +...+.+. +.+|. -.+|++..++..+. --.....|.+++++|+...|+.|..||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446778876 44455543 33443 34566655432211 1235678999999999999999999999999
Q ss_pred EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccce
Q 010051 172 YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINS 251 (519)
Q Consensus 172 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~ 251 (519)
||...+..... ...-.+..++|+|+|..+++++.. |.
T Consensus 286 yD~~~~~t~~~---------------------------------ka~~~P~~iaWHp~gai~~V~s~q----------Ge 322 (545)
T PF11768_consen 286 YDTTRGVTLLA---------------------------------KAEFIPTLIAWHPDGAIFVVGSEQ----------GE 322 (545)
T ss_pred EEcCCCeeeee---------------------------------eecccceEEEEcCCCcEEEEEcCC----------ce
Confidence 99876532100 111225589999999999998877 68
Q ss_pred EEEEeccCCC
Q 010051 252 AYIFSRKDLS 261 (519)
Q Consensus 252 i~i~~~~~~~ 261 (519)
+.+||+.-..
T Consensus 323 lQ~FD~ALsp 332 (545)
T PF11768_consen 323 LQCFDMALSP 332 (545)
T ss_pred EEEEEeecCc
Confidence 8999986443
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.17 E-value=1.4e-06 Score=80.55 Aligned_cols=161 Identities=17% Similarity=0.318 Sum_probs=106.0
Q ss_pred cccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEEcCCC--ceE--EEecc-cccCeEEEEEcCCCCeEEEeeCCCe
Q 010051 99 LSFHRKDVLDLQWST-DGAFLLSGS----VDNSCIIWDVNKG--SVL--QILDA-HFHYVQGVAWDPLSKYVASLSSDRT 168 (519)
Q Consensus 99 ~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~vwd~~~~--~~~--~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~ 168 (519)
..++...+++++|++ |.++||+|- .|..+.|||+.++ .+. ..+.+ -.....+++|..+.+.+++|.....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 345778899999998 566777773 3678999999876 221 12222 2234568899988888999999999
Q ss_pred EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc-CCCeEEEecCCcceeeeec
Q 010051 169 CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP-DGSFLLVPAGSYKISSMSE 247 (519)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~~~ 247 (519)
+.++|++....... .. -...+..+..+| .+.+++... +
T Consensus 178 ~~ifdlRqs~~~~~-sv-------------------------------nTk~vqG~tVdp~~~nY~cs~~-d-------- 216 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVS-SV-------------------------------NTKYVQGITVDPFSPNYFCSNS-D-------- 216 (783)
T ss_pred hhhhhhhhhhhhhh-hh-------------------------------hhhhcccceecCCCCCceeccc-c--------
Confidence 99999985321000 00 012355788888 677777644 3
Q ss_pred ccceEEEEe-ccCCCcccccCCCCCC----CeEEEEEcCCcccccccCCCCcccccceEEEEEec-CCeEEEEeCC
Q 010051 248 SINSAYIFS-RKDLSRPALQLPGASK----PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT-LNSLYIYDTE 317 (519)
Q Consensus 248 ~~~~i~i~~-~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~-d~~i~vwd~~ 317 (519)
+.+-+|| ..+...++..+..... .+..++|+|.... .+++... .++|++||+.
T Consensus 217 --g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg---------------lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 --GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG---------------LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred --CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc---------------hhhhhccCcceEEEeccc
Confidence 5899999 5555555555443333 4899999997532 2333333 3688999875
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.08 E-value=0.0002 Score=69.58 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEE
Q 010051 114 DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVI 193 (519)
Q Consensus 114 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 193 (519)
++..++-|+....+..+|+++.+..+...-..+.|+-|+. +++++.+|...|+|.+-|.++.+...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih------------ 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH------------ 211 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee------------
Confidence 3456778888888999999999887777655556666654 57899999999999999998865321
Q ss_pred eccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCC
Q 010051 194 TKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKP 273 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 273 (519)
....|.+.| .+|+-.|+.|++++-...... -..+.-+.+||++.... +..+.-+.++
T Consensus 212 -------------------t~~aHs~si--SDfDv~GNlLitCG~S~R~~~-l~~D~FvkVYDLRmmra-l~PI~~~~~P 268 (1118)
T KOG1275|consen 212 -------------------TFDAHSGSI--SDFDVQGNLLITCGYSMRRYN-LAMDPFVKVYDLRMMRA-LSPIQFPYGP 268 (1118)
T ss_pred -------------------eeeccccce--eeeeccCCeEEEeeccccccc-ccccchhhhhhhhhhhc-cCCcccccCc
Confidence 112334444 345567888888775533211 12335688999975432 1111112222
Q ss_pred eEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCC---CCC-ceEEEeccccccEEEEEEcCCCCEEEEEe
Q 010051 274 VVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTE---SVP-PIAILAGLHYAAITDIAWSNNARYLALSS 349 (519)
Q Consensus 274 v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~---~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 349 (519)
.-+.|+|.-. ..++.++..|...+-|.. +.. .+..+.. ....+..+.+|++|+.||.|.
T Consensus 269 -~flrf~Psl~---------------t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd 331 (1118)
T KOG1275|consen 269 -QFLRFHPSLT---------------TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGD 331 (1118)
T ss_pred -hhhhhccccc---------------ceEEEEecccceeeccccccCCCccceeEEcc-CCCcceeEEecCCCceEEEec
Confidence 3466777532 346777778888888833 221 1222222 345599999999999999999
Q ss_pred CCCcEEEEE
Q 010051 350 QDGYCTLVE 358 (519)
Q Consensus 350 ~dg~i~vwd 358 (519)
.+|.|.+|.
T Consensus 332 ~~g~v~~wa 340 (1118)
T KOG1275|consen 332 HEGHVNLWA 340 (1118)
T ss_pred ccCcEeeec
Confidence 999999997
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.01 E-value=0.002 Score=61.63 Aligned_cols=191 Identities=13% Similarity=0.045 Sum_probs=106.8
Q ss_pred EecCCCEEEE-EcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeecc
Q 010051 21 FHPISGLLAT-GGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNL 99 (519)
Q Consensus 21 ~sp~~~~la~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~ 99 (519)
++|||+.+.. .-..+.+.+.|.++.+....+.. ......+.++++++.+.+=...+.. + ..+..+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V----------dgnpd~v~~spdGk~afvTsyNsE~-G---~tl~em 265 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV----------DGNLDNVDTDYDGKYAFSTCYNSEE-G---VTLAEM 265 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe----------CCCcccceECCCCCEEEEeccCccc-C---cceeee
Confidence 4567765532 33356677778776655444321 2234566788877766554322211 1 111111
Q ss_pred ccCCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEEcCC----C-ceEEEecccccCeEEEEEcCCCCeEEEee-C
Q 010051 100 SFHRKDVLDLQWS--------TDGAFLLSGSVDNSCIIWDVNK----G-SVLQILDAHFHYVQGVAWDPLSKYVASLS-S 165 (519)
Q Consensus 100 ~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~vwd~~~----~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~ 165 (519)
...... ..+.|+ ++|++...+ ++.|.+.|..+ + ..+..+.- ......+.++|||+++++++ .
T Consensus 266 ~a~e~d-~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 266 MAAERD-WVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred ccccCc-eEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCC
Confidence 111111 334443 477776653 57899999988 3 44444433 34568899999999987655 4
Q ss_pred CCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeee
Q 010051 166 DRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSM 245 (519)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 245 (519)
+.++.+.|+...+......+.+ ...+.............+|.++|....+..-+
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~--------------------~~~vvaevevGlGPLHTaFDg~G~aytslf~d------ 395 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKP--------------------RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLD------ 395 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCc--------------------cceEEEeeccCCCcceEEECCCCCEEEeEeec------
Confidence 8999999998765321111111 11111112223334478898888755554444
Q ss_pred ecccceEEEEeccC
Q 010051 246 SESINSAYIFSRKD 259 (519)
Q Consensus 246 ~~~~~~i~i~~~~~ 259 (519)
+.+-.|++..
T Consensus 396 ----sqv~kwn~~~ 405 (635)
T PRK02888 396 ----SQIVKWNIEA 405 (635)
T ss_pred ----ceeEEEehHH
Confidence 5778888764
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.01 E-value=0.0034 Score=54.61 Aligned_cols=150 Identities=14% Similarity=0.096 Sum_probs=87.8
Q ss_pred ecCCCEEEEEcCCCcEEEEEecCCccccccccccccccc-cccCcceeEEEEccCCCeEEEEEcccCCCccccee-eecc
Q 010051 22 HPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSL-SYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV-LKNL 99 (519)
Q Consensus 22 sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~-~~~~ 99 (519)
.+++.++++++.++.|+.||..+|+.+.+.......... ....+.+. +...++.|..+|..++.. .|+. ....
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~---v~~~~~~l~~~d~~tG~~--~W~~~~~~~ 107 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY---VGTSDGSLYALDAKTGKV--LWSIYLTSS 107 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE---EEETTSEEEEEETTTSCE--EEEEEE-SS
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc---cccceeeeEecccCCcce--eeeeccccc
Confidence 335677777788999999999999987766543222211 22233332 222556899999887732 1221 1110
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccC----------eEEEEEcCCCCeEEEeeCCCeE
Q 010051 100 SFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY----------VQGVAWDPLSKYVASLSSDRTC 169 (519)
Q Consensus 100 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~~~~~dg~i 169 (519)
.... ....+....++..++.+..++.|..+|+.+|+.+..+...... +..-....++ .++.++.++.+
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 108 PPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp CTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred cccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 1111 1222222233788888888999999999999998777554322 1222222334 67777777754
Q ss_pred EEEecCCCC
Q 010051 170 RIYANRPTK 178 (519)
Q Consensus 170 ~iwd~~~~~ 178 (519)
..+|+.+++
T Consensus 186 ~~~d~~tg~ 194 (238)
T PF13360_consen 186 VAVDLATGE 194 (238)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCC
Confidence 444888875
No 341
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.0064 Score=57.93 Aligned_cols=201 Identities=19% Similarity=0.226 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----eEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC-----------eE
Q 010051 106 VLDLQWSTDGAFLLSG-SVDN----SCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR-----------TC 169 (519)
Q Consensus 106 v~~~~~s~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-----------~i 169 (519)
+...++||||++||.+ +..| .|+++|+.+|+.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999998855 3333 6999999999776432111 1223499999988876655432 25
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
..|.+.+.... ...++...........+..++|++++++...... ..
T Consensus 205 ~~~~~gt~~~~---------------------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~------~~ 251 (414)
T PF02897_consen 205 YRHKLGTPQSE---------------------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT------SE 251 (414)
T ss_dssp EEEETTS-GGG----------------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS------SE
T ss_pred EEEECCCChHh---------------------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccc------cC
Confidence 66666554311 0112222222222557889999999987654421 12
Q ss_pred ceEEEEeccCC---CcccccCCCCCCCe-EEEEEcCCcccccccCCCCcccccceEEEEE---ecCCeEEEEeCCCCCc-
Q 010051 250 NSAYIFSRKDL---SRPALQLPGASKPV-VAVRFCPLAFNLRESNSAGFFKLPYRLIFAI---ATLNSLYIYDTESVPP- 321 (519)
Q Consensus 250 ~~i~i~~~~~~---~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~---~~d~~i~vwd~~~~~~- 321 (519)
..+++.+.... ......+......+ ..+... .+ .+++.. ...+.|...++.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~----------------~~yi~Tn~~a~~~~l~~~~l~~~~~~ 314 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD----------------RLYILTNDDAPNGRLVAVDLADPSPA 314 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT----------------EEEEEE-TT-TT-EEEEEETTSTSGG
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC----------------EEEEeeCCCCCCcEEEEecccccccc
Confidence 57888888753 12222222222222 223222 22 122222 1235777778877653
Q ss_pred --eEEEeccccc--cEEEEEEcCCCCEEEE-EeCCC--cEEEEEec
Q 010051 322 --IAILAGLHYA--AITDIAWSNNARYLAL-SSQDG--YCTLVEFE 360 (519)
Q Consensus 322 --~~~~~~~~~~--~i~~~~~s~~g~~l~~-~~~dg--~i~vwd~~ 360 (519)
...+.. +.. .+..+.. .+.+|+. .-.++ .|+++++.
T Consensus 315 ~~~~~l~~-~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 315 EWWTVLIP-EDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp GEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred cceeEEcC-CCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 223333 444 3555544 4445544 44444 47788887
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.98 E-value=0.00038 Score=68.97 Aligned_cols=145 Identities=8% Similarity=0.029 Sum_probs=89.0
Q ss_pred CEEEEE-cCCCcEEEEEecCCcccccccccccc--ccccc------cCcceeEEEEccCCCeEEEEEcccCCCcccceee
Q 010051 26 GLLATG-GADYDIKIWLINSGEKQKKIPTASYQ--NSLSY------HGSAINILRFSPCGGELIIWKLHTTETGQAWKVL 96 (519)
Q Consensus 26 ~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~------~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~ 96 (519)
++|+.. .....|+-.|++.|+.+..+...... ..+.. ....-+.+. -++..|..||.+...........
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG--ls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG--LSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEE--ECCCceEEeccCCCCCceeeccc
Confidence 344433 34567888899999987766543211 00000 001111111 12577889998865311111111
Q ss_pred eccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecC
Q 010051 97 KNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR 175 (519)
Q Consensus 97 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 175 (519)
+.+ .......|++-+.+| +||.|+.+|.|++||--..+....+.+-..+|.+|..+.||++|++.+ +..|.+++..
T Consensus 572 k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 572 KQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred ccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 122 245567888887776 699999999999999533333445667778999999999999987655 5667777754
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.011 Score=50.78 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=106.0
Q ss_pred eccccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCceEEEeccc-ccCeEEEEEcCCCCeEEEeeCCCeEEEEec
Q 010051 97 KNLSFHRKDVLDLQWSTDGAFLL-SGSVDNSCIIWDVNKGSVLQILDAH-FHYVQGVAWDPLSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 97 ~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 174 (519)
+.+.+-...+..|+|+|+.+.|+ +....+.|..++. +|+.++.+.-. .+..-.|++..++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34455566799999999866555 5556788888886 57777766433 356788999877777776656899999988
Q ss_pred CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEE
Q 010051 175 RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254 (519)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i 254 (519)
.......... ....+. +-........+..++|+|.+..|+++-.. .-..+
T Consensus 94 ~~~~~~~~~~----~~~~~~----------------l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------~P~~l 143 (248)
T PF06977_consen 94 DDDTTSLDRA----DVQKIS----------------LGFPNKGNKGFEGLAYDPKTNRLFVAKER----------KPKRL 143 (248)
T ss_dssp ----TT--EE----EEEEEE-------------------S---SS--EEEEEETTTTEEEEEEES----------SSEEE
T ss_pred eccccccchh----hceEEe----------------cccccCCCcceEEEEEcCCCCEEEEEeCC----------CChhh
Confidence 5432110000 000000 00011233457799999998877776433 12233
Q ss_pred EeccC--CCcc--------cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 255 FSRKD--LSRP--------ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 255 ~~~~~--~~~~--------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
|.+.. .... ..........+..+.++|... .+++....+..|..+| ..|+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~---------------~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTG---------------HLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTT---------------EEEEEETTTTEEEEE--TT--EEEE
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCC---------------eEEEEECCCCeEEEEC-CCCCEEEE
Confidence 33321 1000 010112334577888998653 3455555667777788 45665554
Q ss_pred Eecc---cc-----ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010051 325 LAGL---HY-----AAITDIAWSNNARYLALSSQDGYCTLV 357 (519)
Q Consensus 325 ~~~~---~~-----~~i~~~~~s~~g~~l~~~~~dg~i~vw 357 (519)
+.-. |. ..--.|+|.++|++.++ +.-+..++|
T Consensus 208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 4320 11 23567999999976555 455555544
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0011 Score=62.17 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=71.1
Q ss_pred CCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC--------CCeEEEEEcc
Q 010051 14 KPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC--------GGELIIWKLH 85 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~i~vw~~~ 85 (519)
-....+.++|+|+++++++ +|.-.|+........ ..+.-...+|.+. ++.|.|+.--
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k--------------~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNK--------------AFGSGLSFVWSSRNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEE--------------EEEE-SEEEE-TSSEEEEE-TTS-EEEEETT
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccc--------------ccCceeEEEEecCccEEEEECCCeEEEEEcC
Confidence 4478999999999999865 677778873222211 1233344555552 3445553211
Q ss_pred cCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 86 TTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
.. .....+. ....+..|-. |..|+..+. +.|.+||+.+++.++.+... +|..+.|++++.+++..+.
T Consensus 98 ~~------~~~k~i~-~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 98 KN------EVVKSIK-LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EE-------TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred cc------ccceEEc-CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence 11 0111111 1112333333 777776654 48999999999999988754 4899999999999988875
Q ss_pred CCeEEEEecCC
Q 010051 166 DRTCRIYANRP 176 (519)
Q Consensus 166 dg~i~iwd~~~ 176 (519)
+ .+.+++...
T Consensus 165 ~-~i~il~~~~ 174 (443)
T PF04053_consen 165 D-SIYILKYNL 174 (443)
T ss_dssp --SEEEEEE-H
T ss_pred C-eEEEEEecc
Confidence 5 577766543
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0066 Score=57.13 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=88.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccc
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKG 181 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 181 (519)
....+..+.++|+|++++.+ .||.-.++.....+... .+.-..++|.+ .+.+++....+.|.++.--......
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccce
Confidence 44456778888888877774 45667777633333221 12234567776 4446666667777775322222222
Q ss_pred cccccceeeEEEeccCcccccCCcc-------ccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEE
Q 010051 182 VEKMNYVCQHVITKAGQHSTDDSKS-------AKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYI 254 (519)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i 254 (519)
....+..+...+. +......... ....++...... .|..+.|+++|.+++..+.+ .+++
T Consensus 104 ~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-----------~i~i 169 (443)
T PF04053_consen 104 SIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-----------SIYI 169 (443)
T ss_dssp ----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S------------SEEE
T ss_pred EEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-----------eEEE
Confidence 2333333444443 2111111111 111122222222 37899999999999998765 6666
Q ss_pred EeccCC--------C--cccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 255 FSRKDL--------S--RPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 255 ~~~~~~--------~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
++.... + ..+..+..-...|.+..|..+- ++++... +|+. +-.|+ ..+
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~-----------------fiYtT~~--~lkY--l~~Ge-~~~ 227 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC-----------------FIYTTSN--HLKY--LVNGE-TGI 227 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE-----------------EEEE-TT--EEEE--EETTE-EEE
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcCE-----------------EEEEcCC--eEEE--EEcCC-cce
Confidence 665321 0 0111111113344455554430 1111111 3333 11121 111
Q ss_pred EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 325 LAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 325 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
+.. -..++.=+...+..+.|.....|+.|..+.++...
T Consensus 228 i~~-ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 228 IAH-LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEE-cCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 111 13345556666766778888888888888776543
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.84 E-value=0.0071 Score=59.32 Aligned_cols=170 Identities=8% Similarity=0.066 Sum_probs=90.3
Q ss_pred eeEEEEccCCCeEEEecCCcceeeeec--ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCccccc
Q 010051 221 FRRLAWSPDGSFLLVPAGSYKISSMSE--SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLP 298 (519)
Q Consensus 221 i~~~~~sp~g~~l~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~ 298 (519)
.....|+|+|..+++......+..+.. ..+.+++.++..... .. .....|..+.|||||..++...
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-------- 466 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-------- 466 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE--------
Confidence 557899999998888764433332222 234555556643221 11 3345799999999997764321
Q ss_pred ceEEEEEecCCeEEE---EeCCCCCc-e---EEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeec
Q 010051 299 YRLIFAIATLNSLYI---YDTESVPP-I---AILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 299 ~~~~~~~~~d~~i~v---wd~~~~~~-~---~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
++.|++ -....|.. + ..+...-...+.++.|..++.++ ++..++...+|.+.-....... +.
T Consensus 467 ---------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~-~~ 535 (591)
T PRK13616 467 ---------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDA-LP 535 (591)
T ss_pred ---------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccc-cC
Confidence 245555 33333431 1 11221123346889999999855 5555565556665533211111 11
Q ss_pred CCcccccCCCCcccccCCccEEEeecCCceeeecCCCCCccccccc
Q 010051 372 GNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKEPDKRKTEAE 417 (519)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 417 (519)
... ....+..++-+++ .++....++.+...........|.+.
T Consensus 536 ~~n--~~~~v~~vaa~~~--~iyv~~~~g~~~l~~~~~~~~~W~ev 577 (591)
T PRK13616 536 SRN--LSAPVVAVAASPS--TVYVTDARAVLQLPNSDSGDQYWREV 577 (591)
T ss_pred CCC--ccCceEEEecCCc--eEEEEcCCceEEecCCCCCCCCceEC
Confidence 111 1234555666653 45555666665555444555566654
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.80 E-value=6e-05 Score=43.49 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=33.6
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEE
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWL 41 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd 41 (519)
..+.....|...|++++|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566678999999999999999999999999999995
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.041 Score=53.43 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=82.6
Q ss_pred CEEEEEcCCCcEEEEEecCCcccccccccccc-------ccccccCcceeEEEEc------cCCCeEEEEEcccCCCccc
Q 010051 26 GLLATGGADYDIKIWLINSGEKQKKIPTASYQ-------NSLSYHGSAINILRFS------PCGGELIIWKLHTTETGQA 92 (519)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~------~~~~~i~vw~~~~~~~~~~ 92 (519)
..++.++.++.|+-+|..+|+.+-+....... .....+...+..-... ..++.|.-+|..+++..-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 67777888999999999999987665433220 1111111111110000 1245677777766632111
Q ss_pred ceeeec----ccc---------CC-CCe-EEEEEcCCCCEEEEEeCCC------------------eEEEEEcCCCceEE
Q 010051 93 WKVLKN----LSF---------HR-KDV-LDLQWSTDGAFLLSGSVDN------------------SCIIWDVNKGSVLQ 139 (519)
Q Consensus 93 ~~~~~~----~~~---------~~-~~v-~~~~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~ 139 (519)
+..... +.. +. ..+ ...++.+.+..++.++.++ .|.-+|+.+|+.+-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 111000 000 00 111 1345555566777777655 79999999999887
Q ss_pred EecccccCeE------EEEEc----CCCC---eEEEeeCCCeEEEEecCCCCc
Q 010051 140 ILDAHFHYVQ------GVAWD----PLSK---YVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 140 ~~~~h~~~v~------~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~ 179 (519)
.++.-..... ...+. -++. .++.++.+|.+...|.++++.
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 6542111111 01111 1233 577788899999999999874
No 349
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00045 Score=60.73 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=78.1
Q ss_pred EEEEEcCCCceEEEecccccCeEEEEEcCCCC-eEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCc
Q 010051 127 CIIWDVNKGSVLQILDAHFHYVQGVAWDPLSK-YVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSK 205 (519)
Q Consensus 127 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
+++.+..+.+..+.+..|...|..++|+|..+ ++..++.+..|+|.|+++....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v------------------------- 229 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV------------------------- 229 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee-------------------------
Confidence 45555445555556677888999999999877 6788899999999999885321
Q ss_pred cccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCC--CCCCeEEEEEcC
Q 010051 206 SAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPG--ASKPVVAVRFCP 281 (519)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~~v~~~~~sp 281 (519)
........+.+++|.-|....+.++.. .|.|++||++....++..+.+ ...+|..++.-+
T Consensus 230 -------ssy~a~~~~wSC~wDlde~h~IYaGl~---------nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 230 -------SSYIAYNQIWSCCWDLDERHVIYAGLQ---------NGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred -------eheeccCCceeeeeccCCcceeEEecc---------CceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 111123567899999887665554432 279999999988777666554 234555555443
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.017 Score=48.20 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=51.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCC
Q 010051 114 DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTK 178 (519)
Q Consensus 114 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 178 (519)
-|++++.|...|.+++.+..+|.....+..-..--......+++..+..++.|++....|.++..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 37789999999999999999998777665443222234557889999999999999999988754
No 351
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.014 Score=49.51 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=123.3
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCe-EEEEEcCCCceEEEeccccc--CeEEEEEcCCCCeEEEeeCC-----CeEEEEecC
Q 010051 105 DVLDLQWSTDG-AFLLSGSVDNS-CIIWDVNKGSVLQILDAHFH--YVQGVAWDPLSKYVASLSSD-----RTCRIYANR 175 (519)
Q Consensus 105 ~v~~~~~s~~~-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 175 (519)
....++|+|.. .-++.+-.-|+ ..++|....+....+....+ .--.=+|||+|.+|+..-.| |.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34567888854 44566665554 57899888876665532221 12224689999999876543 789999988
Q ss_pred CCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcce--------eeeec
Q 010051 176 PTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKI--------SSMSE 247 (519)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~--------~~~~~ 247 (519)
.+-. .+ -....+.-....+.|.+||+.++++.+.... ..+..
T Consensus 149 ~~fq-rv-----------------------------gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 149 EGFQ-RV-----------------------------GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred cccc-ee-----------------------------cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 5321 11 1111222233478999999999998774322 12334
Q ss_pred ccceEEEEeccCCCc-ccccCC--CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEE
Q 010051 248 SINSAYIFSRKDLSR-PALQLP--GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAI 324 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~-~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 324 (519)
+...+.+.|..+... ...+++ .+...+..+...+||..+..+-..|.-..-..++. -...++++.-
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg-----------~~~~g~~l~~ 267 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVG-----------HFRKGEPLEF 267 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCccee-----------eccCCCcCcc
Confidence 445566666444332 122333 34556777888887754433322221110001111 1112333322
Q ss_pred Eecc------ccccEEEEEEcCCCCEEEEEeCC-CcEEEEEecCCcccceeee
Q 010051 325 LAGL------HYAAITDIAWSNNARYLALSSQD-GYCTLVEFENDELGIPISL 370 (519)
Q Consensus 325 ~~~~------~~~~i~~~~~s~~g~~l~~~~~d-g~i~vwd~~~~~~~~~~~~ 370 (519)
+... ....|-+++.+.+..+++..+-. +...+||..++.......+
T Consensus 268 ~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 268 LDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred cCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc
Confidence 2110 23457778887766666555544 5678999999876544433
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.70 E-value=0.027 Score=48.40 Aligned_cols=118 Identities=19% Similarity=0.328 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEecCCC-EEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 11 HDTKPVLTLDFHPISG-LLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
+-.+.+..|+|+|+.+ ++|+....+.|...+.. |+.+++++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~------------------------------------- 60 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP------------------------------------- 60 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-------------------------------------
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-------------------------------------
Confidence 4455699999999866 66677777777666653 44433221
Q ss_pred cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc------eEEEe-----cccccCeEEEEEcCCCC
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS------VLQIL-----DAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~-----~~h~~~v~~~~~~~~~~ 158 (519)
+. ..+..-.|++..++.++++--.++.+.++++.... ....+ ..+...+-.++|++.++
T Consensus 61 ---------l~-g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~ 130 (248)
T PF06977_consen 61 ---------LD-GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN 130 (248)
T ss_dssp ----------S-S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT
T ss_pred ---------CC-CCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC
Confidence 11 13457788888777766666568999999884321 11222 12446689999999988
Q ss_pred eEEEeeCCCeEEEEecCC
Q 010051 159 YVASLSSDRTCRIYANRP 176 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~ 176 (519)
.|+.+-+..-..+|.+..
T Consensus 131 ~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 131 RLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEEEEESSSEEEEEEES
T ss_pred EEEEEeCCCChhhEEEcc
Confidence 888887776677776654
No 353
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.63 E-value=0.028 Score=51.28 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=37.8
Q ss_pred eEEEEEecCCeEEEEeCCCCCceE---EEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIA---ILAGLHYAAITDIAWSNNARYLALSSQDGYCT 355 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~ 355 (519)
.++++.-..+.|....+..+..+. .+.......+..+++.|||.++++.+.+|.|+
T Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 272 DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 566666667888888887553222 22221444799999999999998888888875
No 354
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00021 Score=41.05 Aligned_cols=39 Identities=38% Similarity=0.589 Sum_probs=34.0
Q ss_pred CceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEe
Q 010051 135 GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYA 173 (519)
Q Consensus 135 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 173 (519)
++....+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00017 Score=68.07 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=82.2
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccC
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDE 379 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 379 (519)
.+++.|+.-|.+++|+-..++....-.....+.+..+..|++..++|.|+..|.|.|+-+.................+..
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~ 125 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKC 125 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCc
Confidence 56888888889999998877655443322345667788899999999999999999999887543333333333334678
Q ss_pred CCCcccccCCccEEEeecCCceeeecCCC
Q 010051 380 NKSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 380 ~~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
.|++++|+++++.+.+|...|.|+....+
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred eEEEEEecccccEEeecCCCceEEEEEec
Confidence 99999999999999999999988655444
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.59 E-value=0.015 Score=53.17 Aligned_cols=181 Identities=12% Similarity=0.158 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCceEEEecccc-cCeEE---EEEcCC----CCeEEEeeC----------CCeEEEEecCCCCcccccccc
Q 010051 125 NSCIIWDVNKGSVLQILDAHF-HYVQG---VAWDPL----SKYVASLSS----------DRTCRIYANRPTKSKGVEKMN 186 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~-~~v~~---~~~~~~----~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 186 (519)
+.|++.|..+.+.+..+.-.. ..+.+ +.+..+ ..+|++|+. .|.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------- 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------- 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-------
Confidence 458888888877766553221 23333 334332 456776653 28899999887400
Q ss_pred ceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC-cccc
Q 010051 187 YVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS-RPAL 265 (519)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~ 265 (519)
..............++|++++-- +|. ++++.+ +.+++|++.... ....
T Consensus 75 ------------------~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-----------~~l~v~~l~~~~~l~~~ 123 (321)
T PF03178_consen 75 ------------------NNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-----------NKLYVYDLDNSKTLLKK 123 (321)
T ss_dssp ---------------------EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-----------TEEEEEEEETTSSEEEE
T ss_pred ------------------cceEEEEEEEEeecCcceEhhhh-CCE-EEEeec-----------CEEEEEEccCcccchhh
Confidence 00112222333445777777766 444 666555 388999987654 1111
Q ss_pred cCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC--CCceEEEeccccccEEEEEEcCCCC
Q 010051 266 QLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES--VPPIAILAGLHYAAITDIAWSNNAR 343 (519)
Q Consensus 266 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~i~~~~~s~~g~ 343 (519)
........+.++.... ++++.|.....+.++..+. .+....-.......++++.|-++++
T Consensus 124 ~~~~~~~~i~sl~~~~------------------~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFK------------------NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED 185 (321)
T ss_dssp EEE-BSSSEEEEEEET------------------TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS
T ss_pred heecceEEEEEEeccc------------------cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc
Confidence 1111222455554443 5677777777777764432 2233222322356689999987777
Q ss_pred EEEEEeCCCcEEEEEecC
Q 010051 344 YLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 344 ~l~~~~~dg~i~vwd~~~ 361 (519)
.++.+..+|.+.++....
T Consensus 186 ~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTSEEEEEEE-S
T ss_pred EEEEEcCCCeEEEEEECC
Confidence 999999999999999874
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.021 Score=56.14 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=40.1
Q ss_pred CCeEEEEEcCCCCEEEEEe------CC--CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC
Q 010051 104 KDVLDLQWSTDGAFLLSGS------VD--NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS 165 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~------~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 165 (519)
..+...+++|||+.++... .| ..|++++. .+.....+.+. ..+...|+|+|..|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEec
Confidence 4678899999999887665 23 35666665 33333323332 3788999999998887764
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.58 E-value=0.01 Score=55.04 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=86.3
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc-------------
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP------------- 74 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------- 74 (519)
+.....++|++++.| |=.++|.|..+|.+.|.|+.....+....... ...-......+.++.|+-
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 334457999999998 55599999999999999997766655422211 000111233455555542
Q ss_pred ----CCCeEEEEEccc-CCCcccceeeeccccCCCCeEEEE-EcCC-C-------------------CEEEEEeCCCeEE
Q 010051 75 ----CGGELIIWKLHT-TETGQAWKVLKNLSFHRKDVLDLQ-WSTD-G-------------------AFLLSGSVDNSCI 128 (519)
Q Consensus 75 ----~~~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~-------------------~~l~~~~~dg~i~ 128 (519)
+.|.+.+|.+.- .......+.......+.+.|..+. |+.+ | ..++....+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 247888887752 211111122222234556666555 3222 1 1133344467899
Q ss_pred EEEcCCCceEEEecccccCeEEEEEc-----CCCCeEEEeeCCCeEEEEecCCCCc
Q 010051 129 IWDVNKGSVLQILDAHFHYVQGVAWD-----PLSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 129 vwd~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
++...+.+..+......-....+.+- ..+..|++-..+|.+++|.+...+.
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 99998887765554222233334442 2466788889999999999887653
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00031 Score=67.78 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=81.5
Q ss_pred EEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 223 RLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 223 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
-.+|+|...++++++-. ....+.+.||--.. .|.... ...-.+++++|+|....|+
T Consensus 20 i~SWHPsePlfAVA~fS------~er~GSVtIfadtG--EPqr~V-t~P~hatSLCWHpe~~vLa--------------- 75 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFS------PERGGSVTIFADTG--EPQRDV-TYPVHATSLCWHPEEFVLA--------------- 75 (1416)
T ss_pred ccccCCCCceeEEEEec------CCCCceEEEEecCC--CCCccc-ccceehhhhccChHHHHHh---------------
Confidence 46899999999887643 23346787775432 222211 1123356799999864443
Q ss_pred EEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 303 FAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
.|-.-|.+.+|...+.+.-..... |..+|..+.||++|..|+++..-|.|.+|.++..
T Consensus 76 -~gwe~g~~~v~~~~~~e~htv~~t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 76 -QGWEMGVSDVQKTNTTETHTVVET-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred -hccccceeEEEecCCceeeeeccC-CCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 344446899999887766555555 9999999999999999999999999999998743
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00057 Score=63.81 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=71.8
Q ss_pred CCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccc
Q 010051 14 KPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAW 93 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~ 93 (519)
-.|.-+.|+|.-.++|.+..+|.|.+..++ -+ +||++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~q---------------------------------Rlwtip~------- 59 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQ---------------------------------RLWTIPI------- 59 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cc---------------------------------eeEeccC-------
Confidence 457889999999999999999988888665 11 3555532
Q ss_pred eeeeccccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cccccCeEEEEEcC
Q 010051 94 KVLKNLSFHRKDVL-DLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL-DAHFHYVQGVAWDP 155 (519)
Q Consensus 94 ~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~ 155 (519)
|...++ +++|.|||+.||.|-.||+|++.|++++..+... ..-..+|.++.|.+
T Consensus 60 --------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 60 --------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred --------CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 344455 9999999999999999999999999999877653 22345677888863
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.54 E-value=0.086 Score=50.27 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=75.8
Q ss_pred CEEEEEEecCCCEEEEE-cCC----CcEEEEEecCCccccccccccccccccccCcceeEEEEccCCC------------
Q 010051 15 PVLTLDFHPISGLLATG-GAD----YDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGG------------ 77 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~-~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------ 77 (519)
.+..+++||||++||.+ +.. ..|+|+|+.+|+.+... +.. .....+.|.+++.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--------i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--------IEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--------EEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--------ccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 34467899999998854 223 35999999999754321 000 0011255555532
Q ss_pred --------eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCC----ceEEEe
Q 010051 78 --------ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSV---D-NSCIIWDVNKG----SVLQIL 141 (519)
Q Consensus 78 --------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d-g~i~vwd~~~~----~~~~~~ 141 (519)
.|+.|.+.+... .-..+..-..+......+..++|+++|+.... + ..+++.++..+ .....+
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cccCCCCcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 244454443311 11123222222223678899999999875433 2 45888888775 233334
Q ss_pred cccccCeEE-EEEcCCCCeEEEeeC---CCeEEEEecCCCC
Q 010051 142 DAHFHYVQG-VAWDPLSKYVASLSS---DRTCRIYANRPTK 178 (519)
Q Consensus 142 ~~h~~~v~~-~~~~~~~~~l~~~~~---dg~i~iwd~~~~~ 178 (519)
..+...+.. +... .+.+++.... .+.|...++....
T Consensus 273 ~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 273 SPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred eCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 333333433 3333 3333333322 3556666665543
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.54 E-value=0.057 Score=48.10 Aligned_cols=201 Identities=17% Similarity=0.161 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEE--------------ecccccCeEEEE--EcCCCCeEEEeeCCCeE
Q 010051 106 VLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQI--------------LDAHFHYVQGVA--WDPLSKYVASLSSDRTC 169 (519)
Q Consensus 106 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~h~~~v~~~~--~~~~~~~l~~~~~dg~i 169 (519)
|..+...++-+.|++-+ |+.++++++..-..... .......+..++ -...+...++......|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88888888777666554 59999999876433221 111223444444 12334444444556689
Q ss_pred EEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeeccc
Q 010051 170 RIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESI 249 (519)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~ 249 (519)
.+|.+........ ........+..+..++|. +..++++...
T Consensus 117 ~i~~~~~~~~~f~---------------------------~~~ke~~lp~~~~~i~~~--~~~i~v~~~~---------- 157 (275)
T PF00780_consen 117 LIYEWNDPRNSFS---------------------------KLLKEISLPDPPSSIAFL--GNKICVGTSK---------- 157 (275)
T ss_pred EEEEEECCccccc---------------------------ceeEEEEcCCCcEEEEEe--CCEEEEEeCC----------
Confidence 9988776421100 011122334667788888 5667766543
Q ss_pred ceEEEEeccCCCcc-cccCCC----------CCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC
Q 010051 250 NSAYIFSRKDLSRP-ALQLPG----------ASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES 318 (519)
Q Consensus 250 ~~i~i~~~~~~~~~-~~~~~~----------~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~ 318 (519)
...++|+.+.... +..... ...++..+.... + .++++ .+..-.+.|. .
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------e~Ll~--~~~~g~fv~~-~ 216 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N----------------EFLLC--YDNIGVFVNK-N 216 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c----------------eEEEE--ecceEEEEcC-C
Confidence 5566666533211 111111 112233333322 2 22332 2223333343 3
Q ss_pred CCceE--EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecC
Q 010051 319 VPPIA--ILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSG 372 (519)
Q Consensus 319 ~~~~~--~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 372 (519)
|++.+ .+. -.....++++ ...||+..+. +.|.||++.++++.+.+..+.
T Consensus 217 G~~~r~~~i~--W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 217 GEPSRKSTIQ--WSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred CCcCcccEEE--cCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 44333 222 2345566666 3458877665 559999999998876666443
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.52 E-value=4.7e-05 Score=70.80 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=121.1
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCce--EEEecccccCeEEEEEcCC-CCeEEEee----CCCeEEEEe
Q 010051 103 RKDVLDLQWSTDG--AFLLSGSVDNSCIIWDVNKGSV--LQILDAHFHYVQGVAWDPL-SKYVASLS----SDRTCRIYA 173 (519)
Q Consensus 103 ~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~-~~~l~~~~----~dg~i~iwd 173 (519)
...+.|++++-+. ..++.|..+|.|.+-.++...- .....+|....++++|++- .+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4456777776543 4688899999999988765432 2334667788999999974 45666553 256799999
Q ss_pred cCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEE
Q 010051 174 NRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAY 253 (519)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~ 253 (519)
+.+.-........+.. .......+++|..+.+.+++|... ..+.
T Consensus 136 i~s~ltvPke~~~fs~--------------------------~~l~gqns~cwlrd~klvlaGm~s----------r~~~ 179 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS--------------------------STLDGQNSVCWLRDTKLVLAGMTS----------RSVH 179 (783)
T ss_pred cccccCCCcccccccc--------------------------ccccCccccccccCcchhhccccc----------chhh
Confidence 9876321111110000 011223478888888888877665 5788
Q ss_pred EEeccCCCcccccCCCCCCCeEEEEEcC-CcccccccCCCCcccccceEEEEEecCCeEEEEeC-CCC-CceEEEec---
Q 010051 254 IFSRKDLSRPALQLPGASKPVVAVRFCP-LAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT-ESV-PPIAILAG--- 327 (519)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~-~~~-~~~~~~~~--- 327 (519)
++|++........ -....+..+...| .+ + .++...||.|.+||. .+- .++..+..
T Consensus 180 ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~----------------n-Y~cs~~dg~iAiwD~~rnienpl~~i~~~~N 240 (783)
T KOG1008|consen 180 IFDLRQSLDSVSS--VNTKYVQGITVDPFSP----------------N-YFCSNSDGDIAIWDTYRNIENPLQIILRNEN 240 (783)
T ss_pred hhhhhhhhhhhhh--hhhhhcccceecCCCC----------------C-ceeccccCceeeccchhhhccHHHHHhhCCC
Confidence 8888733211111 1222444566666 33 2 234444789999993 322 22222221
Q ss_pred cccccEEEEEEcCCCC-EEEEEeCC-CcEEEEEecC
Q 010051 328 LHYAAITDIAWSNNAR-YLALSSQD-GYCTLVEFEN 361 (519)
Q Consensus 328 ~~~~~i~~~~~s~~g~-~l~~~~~d-g~i~vwd~~~ 361 (519)
.....+..++|+|... .|++...| ++|+++++..
T Consensus 241 ~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 241 KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 0112488999999643 45555555 7899999863
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.006 Score=56.14 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=88.9
Q ss_pred CCEE-EEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC----------------CCeEEEEEcccC
Q 010051 25 SGLL-ATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC----------------GGELIIWKLHTT 87 (519)
Q Consensus 25 ~~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~i~vw~~~~~ 87 (519)
.++| .++.....++-.|++.|+.+..... +.. |+-+.+.|+ +..|.-||.+..
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~---------~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKF---------EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeec---------cCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence 3433 3555556688889999987766543 222 555666665 467788888754
Q ss_pred CCc-ccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC
Q 010051 88 ETG-QAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 166 (519)
... -.+..-+.+. ......|.+-..+| ++++|+.+|.|++||.-..+....+.+...+|..+..+.+|++|+..+ +
T Consensus 415 ~~~kl~~~q~kqy~-~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ 491 (644)
T KOG2395|consen 415 GKNKLAVVQSKQYS-TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-K 491 (644)
T ss_pred Ccceeeeeeccccc-cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-c
Confidence 321 0111111221 12345566655555 799999999999999733334455678889999999999999887554 5
Q ss_pred CeEEEEecCC
Q 010051 167 RTCRIYANRP 176 (519)
Q Consensus 167 g~i~iwd~~~ 176 (519)
..+.+.++.-
T Consensus 492 tyLlLi~t~~ 501 (644)
T KOG2395|consen 492 TYLLLIDTLI 501 (644)
T ss_pred cEEEEEEEec
Confidence 6677766544
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.0003 Score=57.20 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=44.6
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEecccc-ccEEEEEEcCCCCEEEEE--eCCCcEEEEEecC
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHY-AAITDIAWSNNARYLALS--SQDGYCTLVEFEN 361 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~--~~dg~i~vwd~~~ 361 (519)
.+..+++.+|.|+.|++.-++.+..... |. .++..+..+..+++|+.+ |.|..++.|++..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 4678899999999999998888777766 66 555555556666666666 6666666666654
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.095 Score=49.02 Aligned_cols=184 Identities=16% Similarity=0.129 Sum_probs=114.9
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEee-CCCeEEEEecCCCCcc
Q 010051 105 DVLDLQWSTDGAFLLSGSV---DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS-SDRTCRIYANRPTKSK 180 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 180 (519)
....++++++++.++.+.. ++++.+.|..+++.+.....-..+ ..++++|+++.++.+. .++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 5678999999988887765 689999999988887775444344 8899999999776655 6889999997665322
Q ss_pred ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCC
Q 010051 181 GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDL 260 (519)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~ 260 (519)
. ... ............+.++|+|.++.+...... .+.+...|....
T Consensus 196 ~-~~~--------------------------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~-------~~~v~~id~~~~ 241 (381)
T COG3391 196 R-GSV--------------------------GSLVGVGTGPAGIAVDPDGNRVYVANDGSG-------SNNVLKIDTATG 241 (381)
T ss_pred c-ccc--------------------------ccccccCCCCceEEECCCCCEEEEEeccCC-------CceEEEEeCCCc
Confidence 1 000 000011233457899999998877654320 236666666543
Q ss_pred CcccccCC-CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEE-ecCCeEEEEeCCCCCceEEEecccc---ccEEE
Q 010051 261 SRPALQLP-GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAI-ATLNSLYIYDTESVPPIAILAGLHY---AAITD 335 (519)
Q Consensus 261 ~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~---~~i~~ 335 (519)
........ +.. ....+.++|+|.. ++.. ...+.+.+.|..+......+.. .. ..+..
T Consensus 242 ~v~~~~~~~~~~-~~~~v~~~p~g~~----------------~yv~~~~~~~V~vid~~~~~v~~~~~~-~~~~~~~~~~ 303 (381)
T COG3391 242 NVTATDLPVGSG-APRGVAVDPAGKA----------------AYVANSQGGTVSVIDGATDRVVKTGPT-GNEALGEPVS 303 (381)
T ss_pred eEEEeccccccC-CCCceeECCCCCE----------------EEEEecCCCeEEEEeCCCCceeeeecc-ccccccccee
Confidence 22111111 112 4556888998854 3333 3347888999888777666544 22 22445
Q ss_pred EEEcCC
Q 010051 336 IAWSNN 341 (519)
Q Consensus 336 ~~~s~~ 341 (519)
+++.+.
T Consensus 304 ~~~~~~ 309 (381)
T COG3391 304 IAISPL 309 (381)
T ss_pred ccceee
Confidence 555444
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00071 Score=63.21 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=67.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeE-EEEEcCCCCeEEEeeCCCeEEEEecCCCCc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQ-GVAWDPLSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
...+.-+.|+|.-..+|.+..+|.|.+..++ .+.+..+.-|...++ +++|.|||+.|++|-.||+|++.|+..+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4567889999999999999999999999987 777788887777777 999999999999999999999999988753
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.022 Score=41.20 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=50.0
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecC
Q 010051 106 VLDLQWST---DG-AFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANR 175 (519)
Q Consensus 106 v~~~~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 175 (519)
|++|++.. || +.|++|+.|..|++|+ ....+..+... ..|+.++-... ..|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 56666655 33 5799999999999998 44666666654 67788877655 679999999999998753
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.41 E-value=0.0089 Score=59.67 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=45.0
Q ss_pred EEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 301 LIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 301 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
+|+.|+.+|.||+||--.......+.+ -..+|..|..+.||+||+..+ +..|.+++..
T Consensus 590 ~iavgs~~G~IRLyd~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 590 YIAVGSNKGDIRLYDRLGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eEEEEeCCCcEEeecccchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 689999999999999543333334455 678999999999999988766 5677777763
No 370
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.38 E-value=0.0056 Score=57.28 Aligned_cols=158 Identities=17% Similarity=0.285 Sum_probs=93.7
Q ss_pred ccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEEcCC-
Q 010051 60 LSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTD----GAFLLSGSVDNSCIIWDVNK- 134 (519)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~vwd~~~- 134 (519)
+...-.++..++|. ||..|.+-++.-......+-.. ..-|.-..|..++|.|- -..|++.-....|.||.+.-
T Consensus 15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred HHhhhccccceEec-CCCEEEEEeeeeeCCccccCCc-cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 33344567788886 6778888777433221111111 11234456899999994 33455566678899999852
Q ss_pred ----CceEEEecccc-----cCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCc
Q 010051 135 ----GSVLQILDAHF-----HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSK 205 (519)
Q Consensus 135 ----~~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
++.+..-..+- ---..+.|+|....|++-.....-.+++++....
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-------------------------- 146 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-------------------------- 146 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--------------------------
Confidence 23322211111 1125678999988887766655545555554321
Q ss_pred cccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEecc
Q 010051 206 SAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRK 258 (519)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~ 258 (519)
.+.......+.|.+.+|.+||+.|+++-+.. -.-|+||-.
T Consensus 147 ----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSs---------LHSyiWd~~ 186 (671)
T PF15390_consen 147 ----RVKADIKTSGLIHCACWTKDGQRLVVAVGSS---------LHSYIWDSA 186 (671)
T ss_pred ----eEEEeccCCceEEEEEecCcCCEEEEEeCCe---------EEEEEecCc
Confidence 1111123457799999999999999887652 245677643
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.1 Score=46.57 Aligned_cols=215 Identities=13% Similarity=0.018 Sum_probs=115.3
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccc
Q 010051 109 LQWSTDGAFL-LSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNY 187 (519)
Q Consensus 109 ~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (519)
..|.++...| .+--..+.|.-|+..+++.. .+... +.+.++..-..+..|+++. .-+.+++...+........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~-- 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE-- 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc--
Confidence 4566766644 44455788999998776532 23322 3344444444444555543 3355666544332100000
Q ss_pred eeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcc-eeeeecccceEEEEeccCCCccccc
Q 010051 188 VCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYK-ISSMSESINSAYIFSRKDLSRPALQ 266 (519)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~ 266 (519)
..........+.+...|+|.+.+....... -.......+.++.++. .......
T Consensus 104 ------------------------~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l 157 (307)
T COG3386 104 ------------------------PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRL 157 (307)
T ss_pred ------------------------ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEe
Confidence 000011234557888899988887655100 0001122244555553 2344445
Q ss_pred CCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC--C----CceEEEeccccccEEEEEEcC
Q 010051 267 LPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES--V----PPIAILAGLHYAAITDIAWSN 340 (519)
Q Consensus 267 ~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~--~----~~~~~~~~~~~~~i~~~~~s~ 340 (519)
+..+-..-+.++||||++.+. ++=+..+.|+-|++.. + +..........+..-.++...
T Consensus 158 ~~~~~~~~NGla~SpDg~tly---------------~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLY---------------VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ecCcEEecCceEECCCCCEEE---------------EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 555566677899999996543 2233346777776652 1 111222211345566788888
Q ss_pred CCCEEEEEeCCC-cEEEEEecCCcccceeeec
Q 010051 341 NARYLALSSQDG-YCTLVEFENDELGIPISLS 371 (519)
Q Consensus 341 ~g~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~ 371 (519)
+|.+.+++..+| .|.+|+-+ +++...+.++
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 898876555554 89999988 6655555554
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0068 Score=60.72 Aligned_cols=100 Identities=16% Similarity=0.319 Sum_probs=72.3
Q ss_pred EEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeE
Q 010051 70 LRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQ 149 (519)
Q Consensus 70 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 149 (519)
++.+.+.|.|...|+...- .....-..-.++|++++|+.+|.+++.|-.+|.|.+||+.+++.++.+..|..+.+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred EEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 5667778888877765431 11122222467899999999999999999999999999999999998877776655
Q ss_pred EEEE---cCCCCeEEEeeCCCeEEEEecCC
Q 010051 150 GVAW---DPLSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 150 ~~~~---~~~~~~l~~~~~dg~i~iwd~~~ 176 (519)
++-+ ..++..++++..-|. +|.+.-
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 5443 345556788777775 665543
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.12 Score=46.09 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=58.1
Q ss_pred eeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEE---EcCCcccccccCCCCcccc
Q 010051 221 FRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVR---FCPLAFNLRESNSAGFFKL 297 (519)
Q Consensus 221 i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~---~sp~~~~l~~~~~~g~~~~ 297 (519)
-+.++||||++.++.+-... +.++.|++...... ..+ ......+. -.||| ++...+|
T Consensus 165 ~NGla~SpDg~tly~aDT~~---------~~i~r~~~d~~~g~---~~~-~~~~~~~~~~~G~PDG---~~vDadG---- 224 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPA---------NRIHRYDLDPATGP---IGG-RRGFVDFDEEPGLPDG---MAVDADG---- 224 (307)
T ss_pred cCceEECCCCCEEEEEeCCC---------CeEEEEecCcccCc---cCC-cceEEEccCCCCCCCc---eEEeCCC----
Confidence 45899999999888765432 56777766521100 000 00011111 12333 2222233
Q ss_pred cceEEEEEecC-CeEEEEeCCCCCceEEEeccccccEEEEEEcC-CCCEEEEEe
Q 010051 298 PYRLIFAIATL-NSLYIYDTESVPPIAILAGLHYAAITDIAWSN-NARYLALSS 349 (519)
Q Consensus 298 ~~~~~~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~ 349 (519)
++.+++... +.|.+|+.+ ++.+..+.- ....+++++|-- +.+.|++.+
T Consensus 225 --~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 225 --NLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred --CEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccceEeCCCcCEEEEEe
Confidence 333344444 389999998 998888887 447788888843 445444433
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.039 Score=39.93 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=64.4
Q ss_pred EEEEEEec-C--C-CEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 16 VLTLDFHP-I--S-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 16 V~~~~~sp-~--~-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
|++|++.. + | +.|++|+.|..||||+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------------------------- 34 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------------------------- 34 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------------------------
Confidence 67777765 3 3 4899999999999996331
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC-CC---CeEEEeeCCC
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP-LS---KYVASLSSDR 167 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~---~~l~~~~~dg 167 (519)
.+..+. ....|++++-... ..++.+-.+|+|-+|+- ...+..++.. ..+.++.+.. ++ ..|++|-.+|
T Consensus 35 ---~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnG 106 (111)
T PF14783_consen 35 ---IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNG 106 (111)
T ss_pred ---EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCC
Confidence 111111 3456777776665 56888999999999985 3334444443 3356666543 32 2588888888
Q ss_pred eEE
Q 010051 168 TCR 170 (519)
Q Consensus 168 ~i~ 170 (519)
.|-
T Consensus 107 kve 109 (111)
T PF14783_consen 107 KVE 109 (111)
T ss_pred eEE
Confidence 764
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.25 E-value=0.053 Score=49.12 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=102.9
Q ss_pred EEEEcCCCCEEEEEeC---CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCcccccc
Q 010051 108 DLQWSTDGAFLLSGSV---DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEK 184 (519)
Q Consensus 108 ~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 184 (519)
.=+|.+||+.|+.++. ...+++.|+.+++..+...+-........++|+++.++.......|+-.|+.+.+...+..
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 3467889977766654 4478888999988766544322223356678888888766666788889998876433222
Q ss_pred ccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEE--ccCCCeEEEecCCcce------------eeeecccc
Q 010051 185 MNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAW--SPDGSFLLVPAGSYKI------------SSMSESIN 250 (519)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--sp~g~~l~~~~~~~~~------------~~~~~~~~ 250 (519)
.+. ..+....| +.++..++-....... ........
T Consensus 120 ~p~-------------------------------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 120 VPD-------------------------------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp --T-------------------------------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred CCc-------------------------------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 211 11212233 2344444322110000 00011223
Q ss_pred eEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec-cc
Q 010051 251 SAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG-LH 329 (519)
Q Consensus 251 ~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~ 329 (519)
.|...|+.++. ...+......+..+.|+|....++.-+.+|....- |.+|.+.+.. +.....+.. ..
T Consensus 169 ~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~V---------d~RiW~i~~d-g~~~~~v~~~~~ 236 (386)
T PF14583_consen 169 RIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLV---------DQRIWTINTD-GSNVKKVHRRME 236 (386)
T ss_dssp EEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTS---------S-SEEEEETT-S---EESS---T
T ss_pred eEEEEECCCCc--eeEEEecCccccCcccCCCCCCEEEEeccCCccee---------ceEEEEEEcC-CCcceeeecCCC
Confidence 45555555432 22333344567788899876433211111110000 1234444433 222232222 01
Q ss_pred cccEEEEEEcCCCCEEEEEeC-----CCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCc
Q 010051 330 YAAITDIAWSNNARYLALSSQ-----DGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 330 ~~~i~~~~~s~~g~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 400 (519)
...+..=-|+|||..|.--+. +..|.-+|..+++....... .....+..++||.+++.-+.|.
T Consensus 237 ~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--------p~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 237 GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--------PWCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---------SEEEEEE-TTSSEEEEEE---
T ss_pred CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--------CceeeeEEcCCCCEEEecCCCC
Confidence 234556679999987654322 33456666666543222221 1234566788888887766553
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.24 E-value=0.0014 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCc
Q 010051 12 DTKPVLTLDFHPISGLLATGGADYDIKIWLINSGE 46 (519)
Q Consensus 12 h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~ 46 (519)
....|.+++|+|..++||.|+.+|.|.|+.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3567999999999999999999999999998 443
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.21 E-value=0.2 Score=47.23 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCE
Q 010051 271 SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARY 344 (519)
Q Consensus 271 ~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 344 (519)
.+++..++.||+|+. ++.-..+|.+.+....-.+.+..+...-......|.|.-+...
T Consensus 216 ~~~i~~iavSpng~~----------------iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKF----------------IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCeEEEEECCCCCE----------------EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 468999999999954 5555556677777766555555554422345667777665433
No 378
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.21 Score=46.78 Aligned_cols=204 Identities=17% Similarity=0.129 Sum_probs=129.9
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC---CCeEEEEecCCCCcc
Q 010051 105 DVLDLQWSTDGAFLL-SGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS---DRTCRIYANRPTKSK 180 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 180 (519)
....+++++.+..++ +...++.|.+.|..+.........-. ....++++++++.++.+.. ++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345778888887555 44456899999987777666554332 5578999999988876665 678888887776532
Q ss_pred ccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCC
Q 010051 181 GVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDL 260 (519)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~ 260 (519)
.... .......++++|+|..++++.... +.+.++|....
T Consensus 154 ~~~~--------------------------------vG~~P~~~a~~p~g~~vyv~~~~~---------~~v~vi~~~~~ 192 (381)
T COG3391 154 ATIP--------------------------------VGNTPTGVAVDPDGNKVYVTNSDD---------NTVSVIDTSGN 192 (381)
T ss_pred EEEe--------------------------------cCCCcceEEECCCCCeEEEEecCC---------CeEEEEeCCCc
Confidence 1100 001115899999999888776332 67888885433
Q ss_pred Cccccc---CCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec--CCeEEEEeCCCCCceEE-EeccccccEE
Q 010051 261 SRPALQ---LPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT--LNSLYIYDTESVPPIAI-LAGLHYAAIT 334 (519)
Q Consensus 261 ~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~i~ 334 (519)
...... .......-..+.++|+|..+ .++... ++.+...|..++..... ...... ...
T Consensus 193 ~v~~~~~~~~~~~~~~P~~i~v~~~g~~~---------------yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~ 256 (381)
T COG3391 193 SVVRGSVGSLVGVGTGPAGIAVDPDGNRV---------------YVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR 256 (381)
T ss_pred ceeccccccccccCCCCceEEECCCCCEE---------------EEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence 211000 11122334568888988543 222222 36899999988877665 222122 456
Q ss_pred EEEEcCCCCEEEEEeCC-CcEEEEEecCCcccc
Q 010051 335 DIAWSNNARYLALSSQD-GYCTLVEFENDELGI 366 (519)
Q Consensus 335 ~~~~s~~g~~l~~~~~d-g~i~vwd~~~~~~~~ 366 (519)
.+..+|+|.++.+.... +.+.+.|..+.....
T Consensus 257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 257 GVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred ceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 78999999998887544 788888877765433
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.14 E-value=0.085 Score=45.17 Aligned_cols=196 Identities=12% Similarity=0.143 Sum_probs=112.6
Q ss_pred EEEEEEecCCCEEEEEcCCC--cEEEEEecCCcccccccccc--ccccccccCcceeEEEEccCCCeEEEEEcccCCCcc
Q 010051 16 VLTLDFHPISGLLATGGADY--DIKIWLINSGEKQKKIPTAS--YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQ 91 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~ 91 (519)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++.....+... ....+..+.+.+..+.|- .+...+||..+-
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk--~~~~f~yd~~tl---- 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK--EGTGFVYDPNTL---- 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS--SSEEEEEETTTT----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec--CCeEEEEccccc----
Confidence 44677777888888777655 79999999998776544332 223444556666666664 588899998765
Q ss_pred cceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccc-----cCeEEEEEcCCCCeEEEeeCC
Q 010051 92 AWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHF-----HYVQGVAWDPLSKYVASLSSD 166 (519)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~~~d 166 (519)
+.+.++. ....=+.++ .|++.|+.......|+++|..+.+....+.-.. ..+.-+.|. +|...|-.=..
T Consensus 121 --~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 121 --KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp --EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred --eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 4555543 234567777 457778877777899999998877766553321 245556765 45555555556
Q ss_pred CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 167 RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
..|...|..+++......+..... ..... ........-.+.++|.|....+++++-.
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~----------~~~~~------~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRP----------EVGRD------KSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHH----------HHTST------TST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhh----------ccccc------ccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 667777877776332221110000 00000 0000113446799999988888776543
No 380
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.13 E-value=0.31 Score=47.75 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=42.2
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeec
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
-|.|.-+|+.+++.+-.... ..+...-.+.-.+.+++.++.||.++.+|..+++......+.
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~--~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKE--DFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecC--CCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 36788899999988776653 111111112225557777888999999999999876665553
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.12 E-value=0.23 Score=46.19 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=33.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 113 TDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 113 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
+|...++.|..+|.|++|.. +|.++..-.-|..+|..+...
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 45678999999999999995 787766666688899888875
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.99 E-value=0.23 Score=45.42 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=92.5
Q ss_pred CCCCCEEEEEEec---C----CCEEEEEcC----------CCcEEEEEecCC-ccccccccccccccccccCcceeEEEE
Q 010051 11 HDTKPVLTLDFHP---I----SGLLATGGA----------DYDIKIWLINSG-EKQKKIPTASYQNSLSYHGSAINILRF 72 (519)
Q Consensus 11 ~h~~~V~~~~~sp---~----~~~la~~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (519)
.....|++++.-. + ..+|++|+. .|.|.++++... .....+. ...-....+.|++++-
T Consensus 21 ~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~----~i~~~~~~g~V~ai~~ 96 (321)
T PF03178_consen 21 EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK----LIHSTEVKGPVTAICS 96 (321)
T ss_dssp ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE----EEEEEEESS-EEEEEE
T ss_pred CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE----EEEEEeecCcceEhhh
Confidence 3445566665432 2 458887753 288999999884 1111111 0011224566777665
Q ss_pred ccC------CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceEEEec--c
Q 010051 73 SPC------GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK-GSVLQILD--A 143 (519)
Q Consensus 73 ~~~------~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~--~ 143 (519)
-.+ |+.|.+|++.... .+.....+. ....+.++... +++++.|.....+.++..+. +..+..+. .
T Consensus 97 ~~~~lv~~~g~~l~v~~l~~~~---~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~ 170 (321)
T PF03178_consen 97 FNGRLVVAVGNKLYVYDLDNSK---TLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY 170 (321)
T ss_dssp ETTEEEEEETTEEEEEEEETTS---SEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES
T ss_pred hCCEEEEeecCEEEEEEccCcc---cchhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC
Confidence 433 7899999998764 122222222 22366777665 66999998888888775543 33233332 2
Q ss_pred cccCeEEEEEcCCCCeEEEeeCCCeEEEEecCC
Q 010051 144 HFHYVQGVAWDPLSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 144 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 176 (519)
....++++.|-++++.++.+..+|.+.++....
T Consensus 171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 344688888886667999999999999998864
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.99 E-value=0.0033 Score=37.63 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV 137 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 137 (519)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5554
No 384
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.99 E-value=0.5 Score=47.76 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------Cce--E-EEe--------cccccCeEEEEEcCC---CC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK---------GSV--L-QIL--------DAHFHYVQGVAWDPL---SK 158 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~~~--~-~~~--------~~h~~~v~~~~~~~~---~~ 158 (519)
-...|..+.+||+|.+|+..|..|.+.+.=.+. |+. . +.+ ..+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 445799999999999999988876444332221 111 1 111 133457899999986 57
Q ss_pred eEEEeeCCCeEEEEecCCC
Q 010051 159 YVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~ 177 (519)
.|+.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999654
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.98 E-value=0.29 Score=44.99 Aligned_cols=109 Identities=9% Similarity=0.060 Sum_probs=52.4
Q ss_pred CCCeEEEEEcccCCCcccceeeecccc---C----CCCeEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCceEEEe
Q 010051 75 CGGELIIWKLHTTETGQAWKVLKNLSF---H----RKDVLDLQWSTDGAFLLSGS------VDNSCIIWDVNKGSVLQIL 141 (519)
Q Consensus 75 ~~~~i~vw~~~~~~~~~~~~~~~~~~~---~----~~~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~ 141 (519)
..+.|+|.|+.+..... +..+.+.. + -.....+..-|+|+.++++- .-|-+.+.|-++.+.....
T Consensus 96 ~SsrIyviD~~~dPr~P--~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W 173 (461)
T PF05694_consen 96 RSSRIYVIDTKTDPRKP--RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRW 173 (461)
T ss_dssp TT--EEEEE--S-TTS---EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE-
T ss_pred ccCcEEEEECCCCCCCC--ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccccee
Confidence 57899999998654322 23332221 1 12223344457898888752 2356888888877777666
Q ss_pred cccc---cCeEEEEEcCCCCeEEEeeC--------------------CCeEEEEecCCCCccccccc
Q 010051 142 DAHF---HYVQGVAWDPLSKYVASLSS--------------------DRTCRIYANRPTKSKGVEKM 185 (519)
Q Consensus 142 ~~h~---~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~ 185 (519)
.... ..-..+-|.|..+.++|... -.++.+||+...+..+...+
T Consensus 174 e~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 174 EKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp -SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred ccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 5432 23456778888888887652 35799999998875544443
No 386
>PRK10115 protease 2; Provisional
Probab=96.96 E-value=0.54 Score=47.79 Aligned_cols=69 Identities=6% Similarity=-0.003 Sum_probs=38.4
Q ss_pred EEEEEcCCCCEEEEEeC------CCeEEEEEcCCC--ceEEEecccccCeE-EEEEcCCCCeEEEeeC---CCeEEEEec
Q 010051 107 LDLQWSTDGAFLLSGSV------DNSCIIWDVNKG--SVLQILDAHFHYVQ-GVAWDPLSKYVASLSS---DRTCRIYAN 174 (519)
Q Consensus 107 ~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~--~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~---dg~i~iwd~ 174 (519)
..++|++|++.|+.... ...|+.+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 34777777766554433 246888888887 33333433223333 2333447777654433 456888875
Q ss_pred C
Q 010051 175 R 175 (519)
Q Consensus 175 ~ 175 (519)
.
T Consensus 255 ~ 255 (686)
T PRK10115 255 E 255 (686)
T ss_pred c
Confidence 3
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.91 E-value=0.12 Score=45.17 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCeEEEee---CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeE
Q 010051 147 YVQGVAWDPLSKYVASLS---SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRR 223 (519)
Q Consensus 147 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 223 (519)
.+...+++++++.++... ....+.++......... . ....+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~------------------------------~----~g~~l~~ 70 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV------------------------------L----TGGSLTR 70 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee------------------------------c----cCCcccc
Confidence 688999999999877655 23345555443221100 0 1124567
Q ss_pred EEEccCCCeEEEecCCcceeeeecccceEEEEe-ccCCCccccc--CCCCCCCeEEEEEcCCcccccccCCCCcccccce
Q 010051 224 LAWSPDGSFLLVPAGSYKISSMSESINSAYIFS-RKDLSRPALQ--LPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYR 300 (519)
Q Consensus 224 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~-~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~ 300 (519)
.+|++++...++..... ...++. .......... .......|..+.+||||..++
T Consensus 71 PS~d~~g~~W~v~~~~~----------~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA------------- 127 (253)
T PF10647_consen 71 PSWDPDGWVWTVDDGSG----------GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVA------------- 127 (253)
T ss_pred ccccCCCCEEEEEcCCC----------ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEE-------------
Confidence 89999988777765442 333332 1121111111 111122899999999997764
Q ss_pred EEEEEecCCeEEEEeCC---CC------CceEEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010051 301 LIFAIATLNSLYIYDTE---SV------PPIAILAGLHYAAITDIAWSNNARYLALSSQDGY 353 (519)
Q Consensus 301 ~~~~~~~d~~i~vwd~~---~~------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 353 (519)
+++....++.|++--+. .+ ..+..... ....++++.|.+++.+++.+...+.
T Consensus 128 ~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 128 VVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred EEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCEEEEEeCCCCC
Confidence 23333344666665433 22 11122222 3467899999999988777665443
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.037 Score=51.24 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=46.0
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.+|++|+.+|.|++||--.......+++ ...+|..+..+.+|++|+..+ +..+.+.++.
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 4799999999999999743333445566 788999999999999987665 5677777764
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.24 Score=42.63 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=79.4
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEeccc-ccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 99 LSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAH-FHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 99 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
+.+-...+.++.|+|+.+.|++......-.||=-.+|+.+.++... -+..-.+.+..++++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455666999999999999999888887777777789988876421 234466788888887777777888888877665
Q ss_pred CccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 178 KSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
......... +..+-...........++|+|....+.++-..
T Consensus 161 t~~~~~~~~---------------------~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr 201 (316)
T COG3204 161 TTVISAKVQ---------------------KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER 201 (316)
T ss_pred ccEEeccce---------------------EEeccccCCCCcCceeeecCCCCceEEEEEcc
Confidence 321111100 00011111113456689999998888875443
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.77 E-value=0.33 Score=43.20 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=46.2
Q ss_pred CcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCe
Q 010051 89 TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRT 168 (519)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~ 168 (519)
.+..|+.+.. .-...+..+..++||++++++..-....-||.-...-...-+.....|..|.|.|++.+.+.+ ..|.
T Consensus 132 gG~tW~~~~~--~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~ 208 (302)
T PF14870_consen 132 GGKTWQAVVS--ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ 208 (302)
T ss_dssp TTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE
T ss_pred CCCCeeEccc--CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE
Confidence 3455555432 344678899999999988888765556678754322222233345789999999997765544 7888
Q ss_pred EEEEe
Q 010051 169 CRIYA 173 (519)
Q Consensus 169 i~iwd 173 (519)
|++=+
T Consensus 209 ~~~s~ 213 (302)
T PF14870_consen 209 IQFSD 213 (302)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 88776
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.69 E-value=0.15 Score=44.42 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=89.4
Q ss_pred eeeEEEEccCCCeEEEec--CCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccc
Q 010051 220 FFRRLAWSPDGSFLLVPA--GSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKL 297 (519)
Q Consensus 220 ~i~~~~~sp~g~~l~~~~--~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~ 297 (519)
.+.+.+++++|..+++.. .+ ...++++.... .....+. ...+....|++++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~---------~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W----------- 80 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDG---------GRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVW----------- 80 (253)
T ss_pred cccceEECCCCCeEEEEEEcCC---------CCEEEEEcCCC--cceeecc--CCccccccccCCCCEE-----------
Confidence 467899999999888766 22 14556655432 2222222 2367778899886432
Q ss_pred cceEEEEEecCCeEEEE-eCCCCCceE-EEecccc-ccEEEEEEcCCCCEEEEEe---CCCcEEEEEecCCcccceeeec
Q 010051 298 PYRLIFAIATLNSLYIY-DTESVPPIA-ILAGLHY-AAITDIAWSNNARYLALSS---QDGYCTLVEFENDELGIPISLS 371 (519)
Q Consensus 298 ~~~~~~~~~~d~~i~vw-d~~~~~~~~-~~~~~~~-~~i~~~~~s~~g~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~ 371 (519)
+....+...+++ +...+.... .+..... ..|+.+.+||||..+|... .++.|.|--+....-+.+..+.
T Consensus 81 -----~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~ 155 (253)
T PF10647_consen 81 -----TVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT 155 (253)
T ss_pred -----EEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec
Confidence 333333344444 333333221 1111011 2899999999998877665 3578888877755444222222
Q ss_pred CCcc---cccCCCCcccccCCccEEEeecCCce
Q 010051 372 GNKV---SKDENKSPLVTKSEDMIIEASTNDKL 401 (519)
Q Consensus 372 ~~~~---~~~~~~~~~~~s~~~~~l~~~~~d~~ 401 (519)
.... .....+..+.|.+++.+++.+.....
T Consensus 156 ~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 156 GPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 2211 12467889999999988877765443
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.36 Score=41.67 Aligned_cols=119 Identities=16% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCc
Q 010051 11 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETG 90 (519)
Q Consensus 11 ~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~ 90 (519)
+-...|.++.|+|+.+.|.+......-.||=...|+.+++++.. +
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-------g---------------------------- 127 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-------G---------------------------- 127 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-------c----------------------------
Confidence 33455999999999998887777777777777777776665421 1
Q ss_pred ccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEE----------EecccccCeEEEEEcCCCCeE
Q 010051 91 QAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQ----------ILDAHFHYVQGVAWDPLSKYV 160 (519)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l 160 (519)
-...-.+.|..+|++.++--.++.+.++.+.....+. .........-.++|.|..+.|
T Consensus 128 ------------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l 195 (316)
T COG3204 128 ------------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRL 195 (316)
T ss_pred ------------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceE
Confidence 1123345666666666666667777777665442211 111125567899999999999
Q ss_pred EEeeCCCeEEEEecCC
Q 010051 161 ASLSSDRTCRIYANRP 176 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~ 176 (519)
+.+-+-.-+.||.+..
T Consensus 196 ~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 196 FVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEEccCCcEEEEEec
Confidence 9988888888887764
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.68 E-value=0.14 Score=50.00 Aligned_cols=133 Identities=12% Similarity=0.208 Sum_probs=78.5
Q ss_pred eeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEec-ccccCeEEEEEc--CCCCeEEEeeCCCeEE
Q 010051 94 KVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILD-AHFHYVQGVAWD--PLSKYVASLSSDRTCR 170 (519)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~l~~~~~dg~i~ 170 (519)
.....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|..+.|.
T Consensus 20 ~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 20 LLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL 99 (631)
T ss_pred EEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence 3334444344455556555555544444445689999998887543222 345789999996 7899999999999999
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESIN 250 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~ 250 (519)
+|.-........ ...+.....+ .+ ....+.+|....|.++|..++.++ +
T Consensus 100 l~~Q~R~dy~~~-~p~w~~i~~i----------------~i--~~~T~h~Igds~Wl~~G~LvV~sG------------N 148 (631)
T PF12234_consen 100 LYTQLRYDYTNK-GPSWAPIRKI----------------DI--SSHTPHPIGDSIWLKDGTLVVGSG------------N 148 (631)
T ss_pred EEEccchhhhcC-CcccceeEEE----------------Ee--ecCCCCCccceeEecCCeEEEEeC------------C
Confidence 985422111000 0001111110 01 111235688899999998777654 4
Q ss_pred eEEEEec
Q 010051 251 SAYIFSR 257 (519)
Q Consensus 251 ~i~i~~~ 257 (519)
.+++++.
T Consensus 149 qlfv~dk 155 (631)
T PF12234_consen 149 QLFVFDK 155 (631)
T ss_pred EEEEECC
Confidence 6777765
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.51 E-value=0.2 Score=45.97 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCEEEEEe--------------------CCCeEEEEEcCCCceEEEecccc--cCeEEEEEc--CCCCe-E
Q 010051 106 VLDLQWSTDGAFLLSGS--------------------VDNSCIIWDVNKGSVLQILDAHF--HYVQGVAWD--PLSKY-V 160 (519)
Q Consensus 106 v~~~~~s~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~~~-l 160 (519)
-..+-|.|..+.++|.. ...++.+||+.+.+.++++.--. .....+.|. |+..+ |
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 35666777777777653 34689999999999999886432 245667775 44444 3
Q ss_pred EEeeCCCeEEEEec-CCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 161 ASLSSDRTCRIYAN-RPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 161 ~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
+.+.-..+|..|-- ..++ +....++......... ......+......+.-|+.+.+|.|.++|.+++--
T Consensus 263 vg~aLss~i~~~~k~~~g~--------W~a~kVi~ip~~~v~~--~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~ 332 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGE--------WAAEKVIDIPAKKVEG--WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL 332 (461)
T ss_dssp EEEE--EEEEEEEE-ETTE--------EEEEEEEEE--EE--S--S---GGGGGG-EE------EEE-TTS-EEEEEETT
T ss_pred EEEeccceEEEEEEcCCCC--------eeeeEEEECCCcccCc--ccccccccccccCCCceEeEEEccCCCEEEEEccc
Confidence 33334555555533 3222 2222222211100000 00000000111224568899999999999987643
Q ss_pred cceeeeecccceEEEEeccCCCcccc
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPAL 265 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~ 265 (519)
. +.++.||+.+...+..
T Consensus 333 ~---------GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 333 H---------GDVRQYDISDPFNPKL 349 (461)
T ss_dssp T---------TEEEEEE-SSTTS-EE
T ss_pred C---------CcEEEEecCCCCCCcE
Confidence 2 7999999988765543
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.3 Score=48.31 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=31.5
Q ss_pred eEEEEeCCC-CC--ceEEEeccccccEEEEEEcCCCCEEEEEeCCC--cEEEEEecCCcc
Q 010051 310 SLYIYDTES-VP--PIAILAGLHYAAITDIAWSNNARYLALSSQDG--YCTLVEFENDEL 364 (519)
Q Consensus 310 ~i~vwd~~~-~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg--~i~vwd~~~~~~ 364 (519)
.+..||..+ .+ .+..+.. .......+.+ +|++.++|+.|| .+..||..+.+.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTES-RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEEecCCCCCCeeEccccCc-ccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 467899886 33 3333332 2222222333 788899999888 677777776654
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.018 Score=57.92 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecC
Q 010051 229 DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATL 308 (519)
Q Consensus 229 ~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d 308 (519)
.+.++++++.. +.+-..|+...-.+...-..-.++|++++|+.+| .+++.|-.+
T Consensus 98 ~~~~ivi~Ts~----------ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg----------------~~l~~G~~~ 151 (1206)
T KOG2079|consen 98 VVVPIVIGTSH----------GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG----------------SLLLAGLGD 151 (1206)
T ss_pred eeeeEEEEcCc----------hhhhhhhhhcccchhhcCCccCCcceeeEecCCC----------------ceeccccCC
Confidence 45566776665 3555555543323333333456799999999999 456666677
Q ss_pred CeEEEEeCCCCCceEEEeccccccEEE---EEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 309 NSLYIYDTESVPPIAILAGLHYAAITD---IAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 309 ~~i~vwd~~~~~~~~~~~~~~~~~i~~---~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
|.|.+||+.+++.++.+.. |..+.+. +.+..++..++++...|. +|.+
T Consensus 152 G~V~v~D~~~~k~l~~i~e-~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 152 GHVTVWDMHRAKILKVITE-HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcEEEEEccCCcceeeeee-cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 7999999999999888876 6555444 345556667778777776 5654
No 397
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.71 Score=45.26 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=40.3
Q ss_pred CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCC
Q 010051 124 DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTK 178 (519)
Q Consensus 124 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 178 (519)
--.|+|+++ +|+.+..+.-..+.+-.+.|+.+ ..|++...+|++.+|++-...
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhh
Confidence 356899996 77777666544457889999965 567778899999999987643
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.39 E-value=1.1 Score=43.94 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=84.7
Q ss_pred CCEEEEEcCCCcEEEEEecCCccccccccccccc--ccc----ccCcceeEEEEcc----CCCeEEEEEcccCCCcccce
Q 010051 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQN--SLS----YHGSAINILRFSP----CGGELIIWKLHTTETGQAWK 94 (519)
Q Consensus 25 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~----~~~~~v~~~~~~~----~~~~i~vw~~~~~~~~~~~~ 94 (519)
+..++.++.|+.|.-.|..+|+.+-......... .+. ...+.|. +..+. .++.|.-+|..+++..-.+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vi-vg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVI-TGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEE-EeecccccCCCcEEEEEECCCCceeEecc
Confidence 3467777889999999999998876554321110 000 1112111 11111 14677777776663211111
Q ss_pred eeec-------------------------cccCCCCeE-EEEEcCCCCEEEEEeCC-----C-----------eEEEEEc
Q 010051 95 VLKN-------------------------LSFHRKDVL-DLQWSTDGAFLLSGSVD-----N-----------SCIIWDV 132 (519)
Q Consensus 95 ~~~~-------------------------~~~~~~~v~-~~~~s~~~~~l~~~~~d-----g-----------~i~vwd~ 132 (519)
.+.. ...-...++ .+++.+...+|+.+... + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1100 000011222 34666666666655411 2 6888899
Q ss_pred CCCceEEEecccccCeEE---------EEEcCCCC---eEEEeeCCCeEEEEecCCCCcc
Q 010051 133 NKGSVLQILDAHFHYVQG---------VAWDPLSK---YVASLSSDRTCRIYANRPTKSK 180 (519)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~---------~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 180 (519)
++|+..-.++...+.+.. +.+..+|+ .++.+..+|.+.+.|.++++..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988776543222222 22224565 6778999999999999998753
No 399
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.32 E-value=0.65 Score=40.46 Aligned_cols=245 Identities=12% Similarity=0.088 Sum_probs=123.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcC------CC-ceEEEecc-----cccCeEEEEEcCCCC------------e
Q 010051 104 KDVLDLQWSTDGAFLLSGSVDNSCIIWDVN------KG-SVLQILDA-----HFHYVQGVAWDPLSK------------Y 159 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----h~~~v~~~~~~~~~~------------~ 159 (519)
..-+.|+++|.+.+-++....+...+||.. .. .++..+.. .....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345789999988777777777899999986 12 22333331 124567777764322 3
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEcc--CCCeEEEec
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSP--DGSFLLVPA 237 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~ 237 (519)
++.+++||+|.-|...-........ ..++.......-...+++-. .+.+|+++.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~------------------------~~~~d~s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRA------------------------EIVVDASQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred EEEEeCCceEEeecCcCCccccccc------------------------EEEEccCCCcceeeeeEEeecCCCceEEEec
Confidence 6788999999999854432100000 00000000111122344443 245555543
Q ss_pred CCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCccccc-------ccCCCCcccccceEEEEEecCCe
Q 010051 238 GSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLR-------ESNSAGFFKLPYRLIFAIATLNS 310 (519)
Q Consensus 238 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-------~~~~~g~~~~~~~~~~~~~~d~~ 310 (519)
-..++|.+||-.-. + +..-.....+-.-.-|.|-+-.-+ ....+. ..+.-+.+..-|.
T Consensus 159 ---------F~~g~IDVFd~~f~-~-~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~----~~~d~v~G~G~G~ 223 (336)
T TIGR03118 159 ---------FRQGRIDVFKGSFR-P-PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA----DRNDEVAGAGLGY 223 (336)
T ss_pred ---------cCCCceEEecCccc-c-ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC----cccccccCCCcce
Confidence 23468888875421 1 110000011100011222110000 000000 0022344455578
Q ss_pred EEEEeCCCCCceEEEec-cccccEEEEEEcC------CCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCc
Q 010051 311 LYIYDTESVPPIAILAG-LHYAAITDIAWSN------NARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSP 383 (519)
Q Consensus 311 i~vwd~~~~~~~~~~~~-~~~~~i~~~~~s~------~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (519)
|.+||+. +..++.+.. ..-..-+.|+..| .|.+|+---.||+|..||..++...-.+.-..-........+.
T Consensus 224 VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWg 302 (336)
T TIGR03118 224 VNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWS 302 (336)
T ss_pred EEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEE
Confidence 9999976 666666632 1334455677655 4667776667999999999877654444332222223345566
Q ss_pred ccccC
Q 010051 384 LVTKS 388 (519)
Q Consensus 384 ~~~s~ 388 (519)
+.|-.
T Consensus 303 L~fGn 307 (336)
T TIGR03118 303 LTFGN 307 (336)
T ss_pred eeeCC
Confidence 66644
No 400
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=96.27 E-value=0.52 Score=49.10 Aligned_cols=69 Identities=7% Similarity=-0.002 Sum_probs=41.0
Q ss_pred EEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC---------------CCceEEEeccccccEEEEEEc
Q 010051 275 VAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES---------------VPPIAILAGLHYAAITDIAWS 339 (519)
Q Consensus 275 ~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~---------------~~~~~~~~~~~~~~i~~~~~s 339 (519)
.+++++++|...++-+....+ +.+--.+.||.|.++--.. ++-...... |-..+.+++.+
T Consensus 596 r~Iavg~~G~lyvaEsD~rri----Nrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A-~lnsp~alaVs 670 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRI----NRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQA-KLNSPYALAVS 670 (1899)
T ss_pred hceeecCCceEEEEeccchhh----hheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcc-ccCCcceEEEC
Confidence 578888888666555444333 4555666677776663221 111111222 56678889999
Q ss_pred CCCCEEEEE
Q 010051 340 NNARYLALS 348 (519)
Q Consensus 340 ~~g~~l~~~ 348 (519)
|||..++.-
T Consensus 671 Pdg~v~IAD 679 (1899)
T KOG4659|consen 671 PDGDVIIAD 679 (1899)
T ss_pred CCCcEEEec
Confidence 999876653
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.32 Score=49.86 Aligned_cols=150 Identities=8% Similarity=0.042 Sum_probs=89.6
Q ss_pred EEecCCCCCEEEEEEecCCCEEEEEc--CCCcEEEEEecCCcccccccccc--ccccccccCcceeEEEEccC-------
Q 010051 7 QINWHDTKPVLTLDFHPISGLLATGG--ADYDIKIWLINSGEKQKKIPTAS--YQNSLSYHGSAINILRFSPC------- 75 (519)
Q Consensus 7 ~~~~~h~~~V~~~~~sp~~~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~------- 75 (519)
.+.++-.-++..+...+|+...++.. .+-.|..||+.+-.......... ...........+.++.|+|.
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence 34445555677777888877655433 34478899987654333211110 11112223344566777765
Q ss_pred ---CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecc----cccCe
Q 010051 76 ---GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDA----HFHYV 148 (519)
Q Consensus 76 ---~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----h~~~v 148 (519)
++.|++..+.... ..+..+ .-....+|++|+|-|+.++.|-..|++.-|-. ..+....+.+ ....|
T Consensus 174 ~l~dlsl~V~~~~~~~-----~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrv 246 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLA-----QNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRV 246 (1405)
T ss_pred hccccchhhhhhhhhh-----hhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcce
Confidence 5666665544221 112222 24567899999999999999999999998875 4443333321 14689
Q ss_pred EEEEEcCCCCeEEEe
Q 010051 149 QGVAWDPLSKYVASL 163 (519)
Q Consensus 149 ~~~~~~~~~~~l~~~ 163 (519)
.+|+|-..-.++++-
T Consensus 247 l~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVVY 261 (1405)
T ss_pred eEEEEecceeEEEEe
Confidence 999998766666543
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=0.024 Score=46.49 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=79.6
Q ss_pred EEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccccCCCCeE
Q 010051 28 LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFHRKDVL 107 (519)
Q Consensus 28 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (519)
|..-+.+|.|+=+++..-+....-.. ....+..-...-..+.....+|.|.+|++.... ............|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~--~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g-----~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER--FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG-----AHSDRVCSGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh--hhhcceeecccCceEEeecccceEEEecCCccc-----hHHHhhhcccccce
Confidence 33345677777777765543221100 000011111122344555567888888775221 11111111222232
Q ss_pred E-EEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccc-cCeEEEEEcCCCCeEEEe--eCCCeEEEEecCCC
Q 010051 108 D-LQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHF-HYVQGVAWDPLSKYVASL--SSDRTCRIYANRPT 177 (519)
Q Consensus 108 ~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~ 177 (519)
+ +.--.++.+.++++.||.|+.|++.-++.+.....|. .++..+..+..++.+..+ |.|..++.|++...
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2 2223355678899999999999999888887777776 455555555556666666 66777777777654
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.15 E-value=0.5 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.7
Q ss_pred CCcceeeEEEEccCCCeEEEecCC
Q 010051 216 TLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 216 ~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
...-.|..+.++|+|++++..+..
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~ 105 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPR 105 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCC
Confidence 344568899999999999988765
No 404
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.10 E-value=1.9 Score=43.84 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=59.2
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCC------CEEEEEeCCCcEEEEEecCC-cccceeeecC
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNA------RYLALSSQDGYCTLVEFEND-ELGIPISLSG 372 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g------~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~ 372 (519)
..++.++.++.+...++..+......+......|.|+.++|-| +++++|..+..+.+.-.... .......+.+
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~ 579 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG 579 (1096)
T ss_pred eEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC
Confidence 3456666666777777766553323222235689999999853 37888888877665544333 2211111222
Q ss_pred CcccccCCCCcccccCCccEEEeecCCcee
Q 010051 373 NKVSKDENKSPLVTKSEDMIIEASTNDKLV 402 (519)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 402 (519)
.. -...+.-..+-.|..+|.++..+|.+
T Consensus 580 ~~--iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 580 EI--IPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred Cc--cchheeeEEeeccceEEEEEcCCceE
Confidence 21 12445555666677888888877777
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.06 E-value=2 Score=43.72 Aligned_cols=380 Identities=13% Similarity=0.134 Sum_probs=179.9
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCC--C------eEEE
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCG--G------ELII 81 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~------~i~v 81 (519)
|...+.++..+.+.+...++.++.++.+...++..+.. +... -......|.|+.++|.+ . .|-+
T Consensus 484 W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~ 555 (1096)
T KOG1897|consen 484 WRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGL 555 (1096)
T ss_pred ccCCCceEEEEEeecceEEEEecCccEEEEEEeeccce-eeee-------eheecceeEEEecccCCCCCCcceEEEEEe
Confidence 34455666666666666677776666666666655541 1110 11234667888888763 1 1334
Q ss_pred EEcccCC----Ccccceeeeccc--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--CCceEEE--ecccccCeEEE
Q 010051 82 WKLHTTE----TGQAWKVLKNLS--FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVN--KGSVLQI--LDAHFHYVQGV 151 (519)
Q Consensus 82 w~~~~~~----~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~--~~~h~~~v~~~ 151 (519)
|+-.... ......+...+. .-...|.-.+|--|..+|+++..||.+.-+-+. +|..-.. ..-...++.--
T Consensus 556 Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr 635 (1096)
T KOG1897|consen 556 WSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLR 635 (1096)
T ss_pred ecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEE
Confidence 5432110 000001111111 123345555666678899999999988766554 4432211 11123344444
Q ss_pred EEcCCCC-eEEEeeCCCeEEEEe---------cCCCCccccccccce--eeEEEeccCcc--cccCCccccceeeecCCC
Q 010051 152 AWDPLSK-YVASLSSDRTCRIYA---------NRPTKSKGVEKMNYV--CQHVITKAGQH--STDDSKSAKNHLFHDETL 217 (519)
Q Consensus 152 ~~~~~~~-~l~~~~~dg~i~iwd---------~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 217 (519)
.|+..++ .+++++ |.-..+|. +.-.+......+... ........+.. ......-.+.++.. ...
T Consensus 636 ~f~sk~~t~vfa~s-drP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irt-vpl 713 (1096)
T KOG1897|consen 636 TFSSKSRTAVFALS-DRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRT-VPL 713 (1096)
T ss_pred EEeeCCceEEEEeC-CCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceee-ecC
Confidence 4544333 333333 33333332 221111111111110 01111111111 11111112222222 334
Q ss_pred cceeeEEEEccCCCeEEEecCCcceeee----ecccceEEEEeccCCCccc-ccCCCC--CCCeEEEEEcCC-ccccccc
Q 010051 218 PSFFRRLAWSPDGSFLLVPAGSYKISSM----SESINSAYIFSRKDLSRPA-LQLPGA--SKPVVAVRFCPL-AFNLRES 289 (519)
Q Consensus 218 ~~~i~~~~~sp~g~~l~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~-~~~~~~--~~~v~~~~~sp~-~~~l~~~ 289 (519)
....+.+++.+....+.+.+........ ......++++|-++....- ..+... ...+.++.|..| +.+++.|
T Consensus 714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence 4566778888866666655543322211 1222456667655432111 111111 123445557666 5555544
Q ss_pred CC----------CCcccc-------------------------cceEEEEEecCCeEEEEeCCCCCceEEEeccccccEE
Q 010051 290 NS----------AGFFKL-------------------------PYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAIT 334 (519)
Q Consensus 290 ~~----------~g~~~~-------------------------~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 334 (519)
+. .|.+.+ -++--+.++-+..|++|+..+.+.++.-.. |..++.
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~-~~~~~~ 872 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIECN-ISNPII 872 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhhhc-ccCCeE
Confidence 32 111100 011223344456788888887766665555 778899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceee
Q 010051 335 DIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVT 403 (519)
Q Consensus 335 ~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 403 (519)
.+...-.|..+++|..-+++.+......+-......+. ......+++.+-.+..++.+-......+
T Consensus 873 aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD---~~p~Wmtaveil~~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 873 ALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD---YNPNWMTAVEILDDDTYLGAENSGNLFT 938 (1096)
T ss_pred EEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh---hCccceeeEEEecCceEEeecccccEEE
Confidence 99999999999999988988888776654221111111 1223445555555556655555555443
No 406
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.06 E-value=1.4 Score=43.72 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=52.8
Q ss_pred eEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCceEEE--ecccccCeE
Q 010051 78 ELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVD------NSCIIWDVNKGSVLQI--LDAHFHYVQ 149 (519)
Q Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~h~~~v~ 149 (519)
.+..+|..+. .|.....+..... -.++++. ++...++|+.| .++..||..+++.... +........
T Consensus 302 ~ve~yd~~~~----~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 302 SVECYDPKTN----EWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG 375 (571)
T ss_pred eeEEecCCcC----cEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce
Confidence 3445555443 2333444432222 3334443 35777888888 3688899888765431 222222222
Q ss_pred EEEEcCCCCeEEEeeCCCe-----EEEEecCCCCccc
Q 010051 150 GVAWDPLSKYVASLSSDRT-----CRIYANRPTKSKG 181 (519)
Q Consensus 150 ~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~ 181 (519)
... -+|...++||.||. +-.||..+.+...
T Consensus 376 v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 376 VAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred eEE--ECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 222 24777888998864 7778887776433
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.91 E-value=0.041 Score=54.35 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=68.9
Q ss_pred ccccCcceeEEEEccCC--------CeEEEEEcccCCCcccc-eeeeccccCCCCeEEEEEcC---CCCEEEEEeCCCeE
Q 010051 60 LSYHGSAINILRFSPCG--------GELIIWKLHTTETGQAW-KVLKNLSFHRKDVLDLQWST---DGAFLLSGSVDNSC 127 (519)
Q Consensus 60 ~~~~~~~v~~~~~~~~~--------~~i~vw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i 127 (519)
+.+.++.|-.+.|...+ |.+.||++..-...-.. -.+...+.....+.-+.|.| +.-++..+-.++.|
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred HhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 44567777778876543 78899998753221111 11222233344455666666 55677777788888
Q ss_pred EEEEcCCCceEEEecccccCeEEEE-----------EcCCCCeEEEeeCCCeEEEEec
Q 010051 128 IIWDVNKGSVLQILDAHFHYVQGVA-----------WDPLSKYVASLSSDRTCRIYAN 174 (519)
Q Consensus 128 ~vwd~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~ 174 (519)
++..+++... ..+.+|...+..++ .+|||..|+++..||.+++|.+
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 8877655332 44556776665554 4566666666666776666643
No 408
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.86 E-value=1.7 Score=41.23 Aligned_cols=38 Identities=21% Similarity=0.055 Sum_probs=28.2
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCc
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGE 46 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~ 46 (519)
....-..-+.|+|.|||++|++--..|.|++++-.++.
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence 33445668899999999888776546999999765543
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.84 E-value=0.035 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCEEEEEEecCC---CEEEEEcCCCcEEEEEecC
Q 010051 14 KPVLTLDFHPIS---GLLATGGADYDIKIWLINS 44 (519)
Q Consensus 14 ~~V~~~~~sp~~---~~la~~~~dg~i~iwd~~~ 44 (519)
++|.++.|||.. .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4888888889999999985
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.14 Score=52.31 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=75.6
Q ss_pred ccCcceeEEEEccCCCeEEEEEcccCCCcc-----cceeeeccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC
Q 010051 62 YHGSAINILRFSPCGGELIIWKLHTTETGQ-----AWKVLKNLSFHRKDVLDLQWSTDG-AFLLSGSVDNSCIIWDVNKG 135 (519)
Q Consensus 62 ~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~ 135 (519)
.|...+..+.++.+|-.|.+||++.-.... .+..............++.|+|.= ...+....|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 355567777778888899999997542211 011111122233455788898853 23556677898988876543
Q ss_pred ce-EEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 136 SV-LQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 136 ~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
.. ...+ .....+++++|+|.|+.++.|-..|++..|.....
T Consensus 189 ~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 189 AQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 22 2222 23467899999999999999999999999976543
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.67 E-value=1.9 Score=40.43 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=81.2
Q ss_pred CCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEcc---C----------CCeEEEEEcccCCCc-
Q 010051 25 SGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSP---C----------GGELIIWKLHTTETG- 90 (519)
Q Consensus 25 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~----------~~~i~vw~~~~~~~~- 90 (519)
...+++|+..|.++||+...+.....- ... -..-..+|..+.... . -..|.||.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----lll-E~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED----LLL-ETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc----EEE-EEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence 358999999999999998544311100 000 001223444444332 1 256777777432211
Q ss_pred ---ccceeeeccccCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeE
Q 010051 91 ---QAWKVLKNLSFHR--KDVLDLQWST----D-GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYV 160 (519)
Q Consensus 91 ---~~~~~~~~~~~~~--~~v~~~~~s~----~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 160 (519)
..++. ..+..|. .....+++-| . ..+++.-+.||.+.+++-+.-...+.+.. .--...+.|.+..+.|
T Consensus 112 ~~g~~~~L-~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 112 EHGNQYQL-ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred ccCcEEEE-EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence 11111 1111122 2223333333 2 35788889999999999765544444433 2223456788888899
Q ss_pred EEeeCCCeEEEEecCC
Q 010051 161 ASLSSDRTCRIYANRP 176 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~ 176 (519)
++++.+..+..|....
T Consensus 190 vt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 190 VTASSSWTLECYKYQD 205 (418)
T ss_pred EEecCceeEEEecHHH
Confidence 9999999999987643
No 412
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.55 E-value=1.6 Score=38.80 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=46.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-CceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCc
Q 010051 113 TDGAFLLSGSVDNSCIIWDVNK-GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 113 ~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
..++.|+.|+.+| |+++++.. ........ ...|..+...++-+.|++-+ |+.+.++++.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 3578899999998 99999833 33333332 23499999999888777765 59999999887653
No 413
>PRK10115 protease 2; Provisional
Probab=95.53 E-value=3.3 Score=42.27 Aligned_cols=72 Identities=7% Similarity=-0.001 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCC------CeEEEE
Q 010051 104 KDVLDLQWSTDGAFLLSGSV-----DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSD------RTCRIY 172 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~iw 172 (519)
-.+..+.|+|||++|+.+.. ...|++.|+.+|..+...-.... ..++|.+|++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667899999998886533 34799999988864322211211 469999999877665443 245556
Q ss_pred ecCCC
Q 010051 173 ANRPT 177 (519)
Q Consensus 173 d~~~~ 177 (519)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 66554
No 414
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.33 E-value=2.1 Score=42.54 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=39.5
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCceEEE--ecccccCeEEEEEcCCCCeEEEeeCC-C-----eEEEEecCCCCc
Q 010051 114 DGAFLLSGSVD------NSCIIWDVNKGSVLQI--LDAHFHYVQGVAWDPLSKYVASLSSD-R-----TCRIYANRPTKS 179 (519)
Q Consensus 114 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~ 179 (519)
.+..++.|+.. ..+..||..++..... +... ..-.+++.. ++...++||.| | ++..||.+.++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 35566777766 3678899888754332 2222 223344444 45777888888 3 467788877764
Q ss_pred c
Q 010051 180 K 180 (519)
Q Consensus 180 ~ 180 (519)
.
T Consensus 362 ~ 362 (571)
T KOG4441|consen 362 T 362 (571)
T ss_pred e
Confidence 3
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.31 E-value=0.55 Score=39.01 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=39.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEc
Q 010051 109 LQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWD 154 (519)
Q Consensus 109 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 154 (519)
++...+|.+.++.-..++|...|..+|+.+..+.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 4445678888888888999999999999999998888999999996
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.27 E-value=0.76 Score=43.80 Aligned_cols=160 Identities=17% Similarity=0.265 Sum_probs=88.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCceEEEecccccCeEEEEEcCCC----CeEEEeeCCCeEEEEec
Q 010051 102 HRKDVLDLQWSTDGAFLLSGS---VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLS----KYVASLSSDRTCRIYAN 174 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~ 174 (519)
--.++..++|. ||+.++-.. ..|.+++=| .+.+..| ..|..+.|.|-+ ..|++.-....|.+|.+
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34578889996 666554332 233333222 1222222 458899999852 24555666788999988
Q ss_pred CCCCccccccccc-eeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEE
Q 010051 175 RPTKSKGVEKMNY-VCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAY 253 (519)
Q Consensus 175 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~ 253 (519)
..........+.. .|.. ...++--...+.|+|....|++-+..+ .-.
T Consensus 90 ~~s~~e~~K~l~sQtcEi----------------------~e~~pvLpQGCVWHPk~~iL~VLT~~d----------vSV 137 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEI----------------------REPFPVLPQGCVWHPKKAILTVLTARD----------VSV 137 (671)
T ss_pred ccCccccccceeeeeeec----------------------cCCcccCCCcccccCCCceEEEEecCc----------eeE
Confidence 7433221111100 0000 001122234788999999888766542 223
Q ss_pred EEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 254 IFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
+++.+.....+..-....+.|.|.+|.+||+.| +++.+..=.-++||-
T Consensus 138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL---------------VVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL---------------VVAVGSSLHSYIWDS 185 (671)
T ss_pred eeeeeeCCceEEEeccCCceEEEEEecCcCCEE---------------EEEeCCeEEEEEecC
Confidence 444443333333333456789999999999754 444444456677764
No 417
>PHA02713 hypothetical protein; Provisional
Probab=95.04 E-value=2.9 Score=41.57 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=40.8
Q ss_pred CeEEEEeCCCCCce--EEEeccccccEEEEEEcCCCCEEEEEeCCC------cEEEEEecC-CcccceeeecCCcccccC
Q 010051 309 NSLYIYDTESVPPI--AILAGLHYAAITDIAWSNNARYLALSSQDG------YCTLVEFEN-DELGIPISLSGNKVSKDE 379 (519)
Q Consensus 309 ~~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 379 (519)
..+..||..+.+-. ..+.. ......+..-+|++.+.|+.++ .+..||..+ .++.....++... .
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~---~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r----~ 504 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWT---GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL----S 504 (557)
T ss_pred ceEEEECCCCCeEeecCCCCc---ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc----c
Confidence 45788888765322 22211 1111112233577777777542 356788776 4443322222211 1
Q ss_pred CCCcccccCCccEEEeecCCc
Q 010051 380 NKSPLVTKSEDMIIEASTNDK 400 (519)
Q Consensus 380 ~~~~~~~s~~~~~l~~~~~d~ 400 (519)
..-+..-+|.+.++|+.++
T Consensus 505 --~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 --ALHTILHDNTIMMLHCYES 523 (557)
T ss_pred --cceeEEECCEEEEEeeecc
Confidence 1112223677778888666
No 418
>PHA03098 kelch-like protein; Provisional
Probab=95.01 E-value=1.4 Score=43.72 Aligned_cols=63 Identities=10% Similarity=0.049 Sum_probs=33.6
Q ss_pred CCCEEEEEeCCC------eEEEEEcCCCceEEEe--cccccCeEEEEEcCCCCeEEEeeCC-----CeEEEEecCCCC
Q 010051 114 DGAFLLSGSVDN------SCIIWDVNKGSVLQIL--DAHFHYVQGVAWDPLSKYVASLSSD-----RTCRIYANRPTK 178 (519)
Q Consensus 114 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 178 (519)
++..++.|+.++ .+..||..+++....- .........+.+ ++..++.||.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 455666666532 5788898877653211 111111222222 46667777765 246667776654
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.79 E-value=1.1 Score=44.14 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=71.2
Q ss_pred CeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCe
Q 010051 231 SFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNS 310 (519)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~ 310 (519)
..++.|+.-+++..+......+.|||.+...............|.++.|.... +| +.+++.+..+.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~--------d~------qsiLaVGf~~~ 97 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTP--------DG------QSILAVGFPHH 97 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecC--------CC------CEEEEEEcCcE
Confidence 33444555555555566668999999976553333333557789999986532 12 66888888888
Q ss_pred EEEEeCC---------CCCceEEE--ecccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEEe
Q 010051 311 LYIYDTE---------SVPPIAIL--AGLHY-AAITDIAWSNNARYLALSSQDGYCTLVEF 359 (519)
Q Consensus 311 i~vwd~~---------~~~~~~~~--~~~~~-~~i~~~~~s~~g~~l~~~~~dg~i~vwd~ 359 (519)
|.+|--. +..++..+ .. |. .+|.+..|.++|.+++.+ +..+.|++-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~-~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISS-HTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeec-CCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 8888532 12233332 22 33 679999999999766654 456788763
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.70 E-value=3 Score=37.26 Aligned_cols=281 Identities=17% Similarity=0.227 Sum_probs=116.9
Q ss_pred EecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCC-ccccccccccccccccc-cCcceeEEEEccCCCeEE-----
Q 010051 8 INWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSG-EKQKKIPTASYQNSLSY-HGSAINILRFSPCGGELI----- 80 (519)
Q Consensus 8 ~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~i~----- 80 (519)
+...-...+..|.|..+..-+|+|. .+. |+....+ +.=..... .... .....+.|.|..+.+.|.
T Consensus 11 v~l~t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~-----~~~~~~~~~l~~I~f~~~~g~ivG~~g~ 82 (302)
T PF14870_consen 11 VSLPTDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSL-----DLDNPFDYHLNSISFDGNEGWIVGEPGL 82 (302)
T ss_dssp EE-S-SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE----------S-----EEEEEEEETTEEEEEEETTE
T ss_pred eecCCCCceEEEEEecCCEEEEEec-CCE--EEEECCCCcccccccc-----CCCccceeeEEEEEecCCceEEEcCCce
Confidence 4445567899999996666666665 453 3444333 22111110 0000 012345556654322111
Q ss_pred EEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eEEEecccccCeEEEEEcCCCCe
Q 010051 81 IWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGS-VLQILDAHFHYVQGVAWDPLSKY 159 (519)
Q Consensus 81 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~ 159 (519)
|+ ++...+..|+.+..-..-......+....++. +..++..|.|+.=. +.|+ -......-.+.+..+.-+++|++
T Consensus 83 ll--~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~ 158 (302)
T PF14870_consen 83 LL--HTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRY 158 (302)
T ss_dssp EE--EESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-E
T ss_pred EE--EecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcE
Confidence 11 22234555655432111122333344333443 33334445443322 2332 22333444567888888999998
Q ss_pred EEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCC
Q 010051 160 VASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGS 239 (519)
Q Consensus 160 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 239 (519)
++++..-..+.-||.-..... .+.......|..|.|+|++...+++.+.
T Consensus 159 vavs~~G~~~~s~~~G~~~w~-------------------------------~~~r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQTTWQ-------------------------------PHNRNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp EEEETTSSEEEEE-TT-SS-E-------------------------------EEE--SSS-EEEEEE-TTS-EEEEETTT
T ss_pred EEEECcccEEEEecCCCccce-------------------------------EEccCccceehhceecCCCCEEEEeCCc
Confidence 888876666677775432111 1111234678899999998887765332
Q ss_pred cceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCC
Q 010051 240 YKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESV 319 (519)
Q Consensus 240 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~ 319 (519)
.+. .........-|.. +........-.+..++|.+++. +.+++..|.+ +...+.|
T Consensus 208 -~~~-~s~~~~~~~~w~~-----~~~~~~~~~~~~ld~a~~~~~~-----------------~wa~gg~G~l-~~S~DgG 262 (302)
T PF14870_consen 208 -QIQ-FSDDPDDGETWSE-----PIIPIKTNGYGILDLAYRPPNE-----------------IWAVGGSGTL-LVSTDGG 262 (302)
T ss_dssp -EEE-EEE-TTEEEEE--------B-TTSS--S-EEEEEESSSS------------------EEEEESTT-E-EEESSTT
T ss_pred -EEE-EccCCCCcccccc-----ccCCcccCceeeEEEEecCCCC-----------------EEEEeCCccE-EEeCCCC
Confidence 111 1111122222222 2222222334578999998763 4444444543 3444455
Q ss_pred CceEEEec--cccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010051 320 PPIAILAG--LHYAAITDIAWSNNARYLALSSQDGYCTLV 357 (519)
Q Consensus 320 ~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw 357 (519)
+.=..... .-....+.+.|.+..+-++. +.+|.|.-|
T Consensus 263 ktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp SS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 54333322 12456888888766555555 468877655
No 421
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.64 E-value=2.3 Score=41.89 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=53.1
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCCceeeecCCC
Q 010051 329 HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 329 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
|.+.|.-+.++..+..|+.-...-.+.++|+.+-.....+ .-.+-+.|-|....++.-+.+...+|-+.+
T Consensus 336 h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----------nfcsymqwvp~sdvivaqn~dnl~iwyn~d 405 (1636)
T KOG3616|consen 336 HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----------NFCSYMQWVPGSDVIVAQNGDNLCIWYNID 405 (1636)
T ss_pred ccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----------HHhhhheeccCcceEEecCCCceEEEecCC
Confidence 7777777777777766666655567788888765321111 123457788888999999999999999887
Q ss_pred CCccccc
Q 010051 409 PDKRKTE 415 (519)
Q Consensus 409 ~~~~~~~ 415 (519)
.......
T Consensus 406 ~peqvt~ 412 (1636)
T KOG3616|consen 406 APEQVTM 412 (1636)
T ss_pred cchhhee
Confidence 5544433
No 422
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.61 E-value=0.18 Score=29.26 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 010051 104 KDVLDLQWSTDG---AFLLSGSVDNSCIIWDVNK 134 (519)
Q Consensus 104 ~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~ 134 (519)
+.|.++.|||+. .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999854 4888887889999999985
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.49 E-value=6.7 Score=40.36 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCceEEEecccccC--------eEEEEEcC----------------CCCeEEEeeCCCeEE
Q 010051 115 GAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHY--------VQGVAWDP----------------LSKYVASLSSDRTCR 170 (519)
Q Consensus 115 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~ 170 (519)
+..|+.++.++.|.-.|..+|+.+-.+...... .+.+.+.. ++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988776533211 12233321 344788888999999
Q ss_pred EEecCCCCc
Q 010051 171 IYANRPTKS 179 (519)
Q Consensus 171 iwd~~~~~~ 179 (519)
-.|.++++.
T Consensus 274 ALDA~TGk~ 282 (764)
T TIGR03074 274 ALDADTGKL 282 (764)
T ss_pred EEECCCCCE
Confidence 999998874
No 424
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=3 Score=36.21 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=84.1
Q ss_pred CEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccC-------CCeEEEEEcccC
Q 010051 15 PVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPC-------GGELIIWKLHTT 87 (519)
Q Consensus 15 ~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~i~vw~~~~~ 87 (519)
-+..+.|+ +++...+..+.-++|.|+.+......+.. +. ..+--+++..+.+ +.-+.+.|+.+.
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~------ln-t~gyaygv~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGF------LN-TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecc------cc-CCceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence 34455555 55666666667799999987765443221 11 1122233333322 444556677655
Q ss_pred CCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce---EEEecccccCeEEEEEcCCCCeEEEee
Q 010051 88 ETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV---LQILDAHFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~~~~ 164 (519)
... +...++.........++.| |++-+.+..|+-+.+.|+..... +.... ....+.++..+++-.+++..
T Consensus 159 ssP---~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 159 SSP---QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred CCc---eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc-
Confidence 433 3444444455555677777 88888888999999999976543 22222 12367777777655544443
Q ss_pred CCCeEEEEecCCCC
Q 010051 165 SDRTCRIYANRPTK 178 (519)
Q Consensus 165 ~dg~i~iwd~~~~~ 178 (519)
+--+.+-|....+
T Consensus 232 -~egvlivd~s~~s 244 (370)
T COG5276 232 -DEGVLIVDVSGPS 244 (370)
T ss_pred -ccceEEEecCCCC
Confidence 3335555655543
No 425
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.30 E-value=0.8 Score=42.75 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=55.7
Q ss_pred ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEE-EEEc-CCC---------------C--
Q 010051 98 NLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQG-VAWD-PLS---------------K-- 158 (519)
Q Consensus 98 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~-~~~---------------~-- 158 (519)
.+......+.+++.+|++++.|+...=|.|.++|+.++..++.+++-.+.-.. +... +.. .
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34456667899999999998888777799999999999888888765442111 1111 111 1
Q ss_pred eEEEeeCCCeEEEEecCCCC
Q 010051 159 YVASLSSDRTCRIYANRPTK 178 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~ 178 (519)
+++-+-.-|.|-||.++.+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEEeccCCeEEEEecCCCC
Confidence 12445567889999988764
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=94.03 E-value=4.8 Score=36.95 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=40.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEE-EcCCCc-eEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEE
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIW-DVNKGS-VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRI 171 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw-d~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 171 (519)
...+.++.+.+++.+++++. .|.+..- + ..++ ....-..-...++++.+.++++.++++ ..|.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence 45688999999887665554 5655432 2 2222 222222334678899999988876654 5676643
No 427
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.84 E-value=1.5 Score=40.35 Aligned_cols=172 Identities=13% Similarity=0.080 Sum_probs=100.9
Q ss_pred CeeEEecCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccc-ccccccc-------ccccccCcceeEEEEccC
Q 010051 4 GTLQINWHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKK-IPTASYQ-------NSLSYHGSAINILRFSPC 75 (519)
Q Consensus 4 ~~~~~~~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~-------~~~~~~~~~v~~~~~~~~ 75 (519)
+.++++......|..+-..|||+.|..-+. ..+.|+++.+.....+ +-...+. ..+.--.+...-+..+++
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 334444455677888999999998776554 5688888765432211 1000000 011112345566667777
Q ss_pred CCeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcC
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDP 155 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 155 (519)
|..-.-+|.+.+.. ..+..++.+.-....+..+.--.+.+-+++-+..|++.++.-...+.+- +..--..+.-++++|
T Consensus 290 G~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp 367 (733)
T COG4590 290 GLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSP 367 (733)
T ss_pred CceeeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCc
Confidence 76666677766533 3334444444333445444433344567777888888887754433322 222223567789999
Q ss_pred CCCeEEEeeCCCeEEEEecCCCCc
Q 010051 156 LSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 156 ~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
.+.++++- ..|.++++.+.+..+
T Consensus 368 ~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 368 NQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ccchheee-cCCceEEEEecCCCC
Confidence 99988864 357899998887654
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.70 E-value=0.31 Score=44.53 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=95.9
Q ss_pred EEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCc
Q 010051 139 QILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLP 218 (519)
Q Consensus 139 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (519)
..+..-...|..+-..|+|+.++.-+. ..+.++++.+.......-....+.. ..
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~-------------------------~~ 267 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGD-------------------------SR 267 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCc-------------------------hH
Confidence 334445567888889999999877665 6788888876543221111000000 00
Q ss_pred ceee-EEEEccCCCeEEEecCCcceeeeecccceE-EEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCccc
Q 010051 219 SFFR-RLAWSPDGSFLLVPAGSYKISSMSESINSA-YIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFK 296 (519)
Q Consensus 219 ~~i~-~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~ 296 (519)
..|+ .+..-..|..+++...++ .+ .-+|.+.... .|-..+....+.|....+.....+.
T Consensus 268 ~~Vte~l~lL~Gg~SLLv~~~dG----------~vsQWFdvr~~~~------p~l~h~R~f~l~pa~~~~l~pe~~r--- 328 (733)
T COG4590 268 HQVTEQLYLLSGGFSLLVVHEDG----------LVSQWFDVRRDGQ------PHLNHIRNFKLAPAEVQFLLPETNR--- 328 (733)
T ss_pred HHHHHHHHHHhCceeEEEEcCCC----------ceeeeeeeecCCC------CcceeeeccccCcccceeecccccc---
Confidence 0011 111222344455555443 33 2345544332 2233344445554443333333322
Q ss_pred ccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCc
Q 010051 297 LPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDE 363 (519)
Q Consensus 297 ~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~ 363 (519)
+-+++-...|++.++.....+.+..-.. -..+.-+++||++.+|++- ..|.++++.+++..
T Consensus 329 ---kgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 329 ---KGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred ---ceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 4567777788888887665554433222 2356778999999999875 35889999998763
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.67 E-value=5.6 Score=36.48 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce---EEEe----cccccCeEEEEEcCC
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV---LQIL----DAHFHYVQGVAWDPL 156 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~----~~h~~~v~~~~~~~~ 156 (519)
..+.|+|.|||+.|+ +...|.|++++ ..+.. +..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 468899999987666 45699999999 45543 2222 223457899999984
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=9 Score=38.14 Aligned_cols=83 Identities=11% Similarity=0.243 Sum_probs=48.2
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe----cccccCeEEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL----DAHFHYVQGVA 152 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~ 152 (519)
-.|+|+++... .+..+.-....+-.+-|+.+.. |++...+|++++|++ .|..+... ......|..+.
T Consensus 64 ~~I~If~~sG~-------lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~-~ge~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 64 PYIRIFNISGQ-------LLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGL-LGEFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred eeEEEEecccc-------chHHHHhcCCCeeeecccCCce-EEEEeccceEEEeec-chhhhcccccccccccCceeEEE
Confidence 34777776543 4444433344788999987654 667789999999997 34333321 22233455555
Q ss_pred EcCCCCeEEEeeCCCeEE
Q 010051 153 WDPLSKYVASLSSDRTCR 170 (519)
Q Consensus 153 ~~~~~~~l~~~~~dg~i~ 170 (519)
+..+|-.+++ .+|.+.
T Consensus 135 ~f~~GVavlt--~~g~v~ 150 (829)
T KOG2280|consen 135 FFHNGVAVLT--VSGQVI 150 (829)
T ss_pred EecCceEEEe--cCCcEE
Confidence 5555533333 344443
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.44 E-value=5.3 Score=37.32 Aligned_cols=155 Identities=11% Similarity=0.120 Sum_probs=75.4
Q ss_pred ceeeEEEEccCCCeEEEecCCcceeeee-ccc-ceEEEEeccCCCcc---cccCCCCCCCeEEEEEcCCcccccccCCCC
Q 010051 219 SFFRRLAWSPDGSFLLVPAGSYKISSMS-ESI-NSAYIFSRKDLSRP---ALQLPGASKPVVAVRFCPLAFNLRESNSAG 293 (519)
Q Consensus 219 ~~i~~~~~sp~g~~l~~~~~~~~~~~~~-~~~-~~i~i~~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g 293 (519)
.....|+|.++|+.+++...+.....-. ... ..|.+++-.+.... ...+.........+++.++| .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-------- 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-------- 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E--------
Confidence 3456899999999888754221100000 011 25666654332211 12222223345678888776 2
Q ss_pred cccccceEEEEEecCCeEEEE-eCCC-----CCceEEEe---cc---ccccEEEEEEcCCCCEEEEEeCC----------
Q 010051 294 FFKLPYRLIFAIATLNSLYIY-DTES-----VPPIAILA---GL---HYAAITDIAWSNNARYLALSSQD---------- 351 (519)
Q Consensus 294 ~~~~~~~~~~~~~~d~~i~vw-d~~~-----~~~~~~~~---~~---~~~~i~~~~~s~~g~~l~~~~~d---------- 351 (519)
+.+... .|..| |... ++....+. .. +......++|.|||.+.++-+..
T Consensus 85 ---------yV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~ 154 (367)
T TIGR02604 85 ---------YVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGT 154 (367)
T ss_pred ---------EEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCC
Confidence 222222 34433 4321 12111222 10 13447789999999877665521
Q ss_pred ---------CcEEEEEecCCcccceeeecCCcccccCCCCcccccCCccEEEeecCC
Q 010051 352 ---------GYCTLVEFENDELGIPISLSGNKVSKDENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 352 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 399 (519)
|.|.-++.+..+. .+...+ ......++|+++|.++++-..+
T Consensus 155 ~~~~~~~~~g~i~r~~pdg~~~--e~~a~G-----~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 155 SDESRQGLGGGLFRYNPDGGKL--RVVAHG-----FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCcccccCceEEEEecCCCeE--EEEecC-----cCCCccceECCCCCEEEEccCC
Confidence 2233333333221 111112 2355778999999887765533
No 432
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.38 E-value=4.8 Score=34.84 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=97.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCceEEEeccc-ccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccc
Q 010051 105 DVLDLQWSTDGAFLLSGSVDN--SCIIWDVNKGSVLQILDAH-FHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKG 181 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 181 (519)
-...+.|..+|.++-+.+.-| .|+.+|+.+|+......-. ...--.++... ++...-.=.++...+||..+.+...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 345688877787777777665 7999999999876554322 12223444442 2333333457889999988754221
Q ss_pred cccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCC
Q 010051 182 VEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLS 261 (519)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 261 (519)
.... ++.=..++ .+|+.|+.+.++ ..++.+|..+..
T Consensus 125 ~~~y--------------------------------~~EGWGLt--~dg~~Li~SDGS----------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 125 TFPY--------------------------------PGEGWGLT--SDGKRLIMSDGS----------SRLYFLDPETFK 160 (264)
T ss_dssp EEE---------------------------------SSS--EEE--ECSSCEEEE-SS----------SEEEEE-TTT-S
T ss_pred EEec--------------------------------CCcceEEE--cCCCEEEEECCc----------cceEEECCcccc
Confidence 1111 01111333 577778877666 577777765433
Q ss_pred ccc-ccCCCC---CCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEecc---------
Q 010051 262 RPA-LQLPGA---SKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGL--------- 328 (519)
Q Consensus 262 ~~~-~~~~~~---~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--------- 328 (519)
... ...... -..++.+.|- +| ...+-.-....|...|..+|+.+..+...
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i-~G----------------~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~ 223 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYI-NG----------------KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRD 223 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEE-TT----------------EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTST
T ss_pred eEEEEEEEECCEECCCcEeEEEE-cC----------------EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccc
Confidence 211 011111 1234455554 23 22233334567888899999888766320
Q ss_pred --c---cccEEEEEEcCCCCEEEEEe
Q 010051 329 --H---YAAITDIAWSNNARYLALSS 349 (519)
Q Consensus 329 --~---~~~i~~~~~s~~g~~l~~~~ 349 (519)
+ ..-.+.++|.|....|...+
T Consensus 224 ~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 224 KSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccccCCeeEeEeEeCCCCEEEEEe
Confidence 0 23578999998876555544
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.14 E-value=4.4 Score=33.68 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=40.8
Q ss_pred CEEEEEeCCCeEEEEEcCC--CceEEEecccccCeEEEEEcCCCCeEEEeeCCC------eEEEE
Q 010051 116 AFLLSGSVDNSCIIWDVNK--GSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR------TCRIY 172 (519)
Q Consensus 116 ~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg------~i~iw 172 (519)
..|+.+...+.|.+|++.. .+.+..+..- +.|..+.++..|++|+|.-.+. .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 4555556678899999983 3455666554 7899999999999999975432 56665
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.00 E-value=7.9 Score=36.20 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEE-EcCCC-----ce---EEEecc----cccCeEEEEEcCCCCeEEEee
Q 010051 105 DVLDLQWSTDGAFLLSGSVDNSCIIW-DVNKG-----SV---LQILDA----HFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 105 ~v~~~~~s~~~~~l~~~~~dg~i~vw-d~~~~-----~~---~~~~~~----h~~~v~~~~~~~~~~~l~~~~ 164 (519)
..+.+++.++| |+++.... |..| |.... +. +..+.. +......++|.|+|.+.++.+
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC--EEEeCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 45778888888 44444443 5444 44321 11 112222 134577899999998766655
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=4.9 Score=37.28 Aligned_cols=140 Identities=9% Similarity=0.038 Sum_probs=84.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---eEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccc
Q 010051 107 LDLQWSTDGAFLLSGSVDNSCIIWDVNKGS---VLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVE 183 (519)
Q Consensus 107 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 183 (519)
+.+-|...++.|+ +...|.+.-|-+.... .+..-....++|.++.|++|.+.|++--.+.+|.+++....+.....
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 3445544344444 3344556666654321 22222334579999999999999999999999999988654422111
Q ss_pred cccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcc
Q 010051 184 KMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRP 263 (519)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 263 (519)
. .........|....|+.+ .-++..... .+.+|-.....+.
T Consensus 105 ~---------------------------~~ck~k~~~IlGF~W~~s-~e~A~i~~~-----------G~e~y~v~pekrs 145 (657)
T KOG2377|consen 105 T---------------------------QECKTKNANILGFCWTSS-TEIAFITDQ-----------GIEFYQVLPEKRS 145 (657)
T ss_pred H---------------------------HHhccCcceeEEEEEecC-eeEEEEecC-----------CeEEEEEchhhhh
Confidence 1 011112234667888876 344443332 3455555444455
Q ss_pred cccCCCCCCCeEEEEEcCCcccc
Q 010051 264 ALQLPGASKPVVAVRFCPLAFNL 286 (519)
Q Consensus 264 ~~~~~~~~~~v~~~~~sp~~~~l 286 (519)
++....|...|+=..|+++...+
T Consensus 146 lRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 146 LRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhcccCccEEEEccccceE
Confidence 66667788888889999987653
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=1.4 Score=40.59 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=73.1
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCC
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTET 89 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~ 89 (519)
....++|.++.||+|.+.||+--.+.+|.+++....+...
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l---------------------------------------- 102 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL---------------------------------------- 102 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh----------------------------------------
Confidence 3445677888888888778777777777777764333211
Q ss_pred cccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceEEEecccccCeEEEEEcCCCCeEEEee--CC
Q 010051 90 GQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKG-SVLQILDAHFHYVQGVAWDPLSKYVASLS--SD 166 (519)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~d 166 (519)
......+..+..|...+|+.+ .-+|..+..| +-+|-.... +.++..+.|...|.-..|.++.+.++-++ ..
T Consensus 103 ----~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~ 176 (657)
T KOG2377|consen 103 ----EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLE 176 (657)
T ss_pred ----HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccc
Confidence 111122224556888888765 4566665555 666665443 34556677888899999998877654333 33
Q ss_pred CeEEEEecCC
Q 010051 167 RTCRIYANRP 176 (519)
Q Consensus 167 g~i~iwd~~~ 176 (519)
+++.-+-+++
T Consensus 177 n~lnpf~~~~ 186 (657)
T KOG2377|consen 177 NVLNPFHFRA 186 (657)
T ss_pred cccccEEEee
Confidence 4444444433
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.90 E-value=2.2 Score=40.02 Aligned_cols=63 Identities=6% Similarity=0.006 Sum_probs=49.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCC
Q 010051 114 DGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 114 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 177 (519)
...++|.|+..|.|++||.-.-+....+.+....|..+..+.+|+++++.+ ...|.+-|++..
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ik 634 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVPIK 634 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecccc
Confidence 345899999999999999655444555677778999999999999876554 467888887654
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.75 E-value=1 Score=38.23 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=50.3
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceEEE-------ec-------ccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCC
Q 010051 111 WSTDGAFLLSGSVDNSCIIWDVNKGSVLQI-------LD-------AHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 111 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~-------~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 176 (519)
+..++.+|++-+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 334688999999999999999998875432 12 3456788899998888777765 57888998766
Q ss_pred C
Q 010051 177 T 177 (519)
Q Consensus 177 ~ 177 (519)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 439
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.63 E-value=6.8 Score=36.91 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=40.3
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.++..-+.||.+.+|+-+.-.....+.+ .--..-+++.+.-..|++++.+..+.-|...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 6788888999999999765433333332 1112236777777888888888888888763
No 440
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.49 E-value=10 Score=36.45 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=55.2
Q ss_pred EEEEecCCeEEEEeCCC-CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccCC
Q 010051 302 IFAIATLNSLYIYDTES-VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDEN 380 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 380 (519)
+-.++..+-+..|+.++ +..+....+...+.|..+.=.|+++ |..|+.+|.++. +.+.+.....+.. +........
T Consensus 389 lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~-~~~~l~~s~ 465 (671)
T COG3292 389 LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNP-GSHGLDGSR 465 (671)
T ss_pred EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhccccc-ccCcCCcch
Confidence 44444443455566555 4444444444567888888889988 777888886654 2222222222222 222223345
Q ss_pred CCcccccCCccEEEeecCCceeeecCCC
Q 010051 381 KSPLVTKSEDMIIEASTNDKLVTAETKE 408 (519)
Q Consensus 381 ~~~~~~s~~~~~l~~~~~d~~i~~~~~~ 408 (519)
+..+..-|+|++-+..+. ++..|+...
T Consensus 466 ~~~lg~~~~g~Lw~a~g~-gva~~~sq~ 492 (671)
T COG3292 466 VEQLGLGPDGRLWLAAGS-GVAAWESQR 492 (671)
T ss_pred hhhhccCCCCceEEEecc-eeeeecccc
Confidence 677788888865444333 234444443
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.18 E-value=1.7 Score=36.86 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=52.8
Q ss_pred EecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeeccc
Q 010051 21 FHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKNLS 100 (519)
Q Consensus 21 ~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~ 100 (519)
+..++++|++-+.+|.+++||+.+++....-. .+..+. +.. .... .
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-------------Si~pll-----------~~~---------~~~~-~ 63 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-------------SIAPLL-----------NSS---------PVSD-K 63 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-------------cHHHHh-----------ccc---------cccc-C
Confidence 44568899999999999999999887643210 000000 000 0000 0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEE
Q 010051 101 FHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQ 139 (519)
Q Consensus 101 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 139 (519)
.....|..+.++.+|.-|++-+ +|..+.|+..-+..+.
T Consensus 64 ~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 64 SSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCWIR 101 (219)
T ss_pred CCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccceeEE
Confidence 2556788889988888777665 5788999876554443
No 442
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.18 E-value=8.3 Score=34.46 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=83.9
Q ss_pred CEEEEEEecCCCEEE--EEcC----------CCcEEEEEecCCccccccccccccccccccCcceeE-------------
Q 010051 15 PVLTLDFHPISGLLA--TGGA----------DYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINI------------- 69 (519)
Q Consensus 15 ~V~~~~~sp~~~~la--~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------- 69 (519)
.|..+...+++++-+ +|.- .-.|.+||+.+++.++++........ .....+.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~---~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP---PDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc---cccccceEEEEccCCCCcce
Confidence 467788887777433 3321 12689999999998888765433222 1222233
Q ss_pred EEEccC--CCeEEEEEcccCCCcccceeeeccc----------------cCCCCeEEEEEcC---CCCEEEEEeCCCeEE
Q 010051 70 LRFSPC--GGELIIWKLHTTETGQAWKVLKNLS----------------FHRKDVLDLQWST---DGAFLLSGSVDNSCI 128 (519)
Q Consensus 70 ~~~~~~--~~~i~vw~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~s~---~~~~l~~~~~dg~i~ 128 (519)
.++-+| .+.|.|+|+.++.. |+...... .....+..++.+| +++.|+.....+ -.
T Consensus 79 ~aYItD~~~~glIV~dl~~~~s---~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ 154 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLATGKS---WRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RK 154 (287)
T ss_dssp EEEEEETTTCEEEEEETTTTEE---EEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SE
T ss_pred EEEEeCCCcCcEEEEEccCCcE---EEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-Cc
Confidence 333333 35788899877632 11111100 0223477777766 667777766544 23
Q ss_pred EEEcCCC--------------ceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCC
Q 010051 129 IWDVNKG--------------SVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 129 vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 176 (519)
+|.+.+. ..++.+-........++++++|.++++--..+.|..|+...
T Consensus 155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 155 LYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred EEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 4443321 11122211123556788889999999999999999999876
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=92.06 E-value=11 Score=36.75 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCceEEE--ecccccCeEEEEEcCCCCeEEEeeCCC--eEEEEecCCC
Q 010051 114 DGAFLLSGSVD-----NSCIIWDVNKGSVLQI--LDAHFHYVQGVAWDPLSKYVASLSSDR--TCRIYANRPT 177 (519)
Q Consensus 114 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 177 (519)
++..+++|+.+ ..+..||..++..... +.........+. -++...+.||.++ .+..||...+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCC
Confidence 34556667654 2577888877654332 111111112222 3566667777543 4666776544
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.05 E-value=6.3 Score=37.18 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=46.1
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEec
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFE 360 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~ 360 (519)
.++++++..|.|++||--.-.....+++ ....|..+..+.+|++|++.|. ..+.+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~-lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPG-LGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcc-cccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 5789999999999999665454555566 7788999999999998877664 567777765
No 445
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.04 E-value=0.87 Score=25.90 Aligned_cols=32 Identities=6% Similarity=-0.029 Sum_probs=21.3
Q ss_pred ecCCCCCEEEEEEecCCCEEEEEc-CC--CcEEEE
Q 010051 9 NWHDTKPVLTLDFHPISGLLATGG-AD--YDIKIW 40 (519)
Q Consensus 9 ~~~h~~~V~~~~~sp~~~~la~~~-~d--g~i~iw 40 (519)
.....+.-.+..|||||++|+.++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445566788999999999887554 44 555555
No 446
>PF09453 HIRA_B: HIRA B motif; InterPro: IPR019015 The HirA B (Histone regulatory homologue A binding) motif is the essential binding interface between IPR011494 from INTERPRO and ASF1a, of approx. 40 residues. It forms an antiparallel beta-hairpin that binds perpendicular to the strands of the beta-sandwich of ASF1a N-terminal core domain, via beta-sheet, salt bridge and van der Waals interactions []. The two histone chaperone proteins, HIRA and ASF1a, form a heterodimer with histones H3 and H4. HIRA is the human orthologue of Hir proteins known to silence histone gene expression and create transcriptionally silent heterochromatin in yeast, flies, plants and humans. The HIR complex is composed of HIR1, HIR2, HIR3 and HPC2, and interacts with ASF1. The HIR complex cooperates with ASF1 to promote replication-independent chromatin assembly. The HIR complex is also required for the periodic repression of three of the four histone gene loci during cell cycle as well as for autogenous regulation of the HTA1-HTB1 locus by H2A and H2B. DNA-binding by the HIR complex may repress transcription by inhibiting nucleosome remodeling by the SWI/SNF complex. The HIR complex may also be required for transcriptional silencing of centromeric, telomeric and mating-type loci in the absence of CAF-1. ; GO: 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0016568 chromatin modification, 0005634 nucleus; PDB: 2I32_E.
Probab=91.63 E-value=0.046 Score=26.81 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=8.3
Q ss_pred Ccccccccccccc
Q 010051 505 NKPAKRRITPMAI 517 (519)
Q Consensus 505 ~~~~~~~~~p~~~ 517 (519)
.|++|||++|+.|
T Consensus 7 ~k~GKkRi~P~li 19 (24)
T PF09453_consen 7 TKDGKKRIAPTLI 19 (24)
T ss_dssp -TTS-EEEE-EE-
T ss_pred ccCCceEeccEEe
Confidence 6789999999987
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.51 E-value=2.4 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 010051 104 KDVLDLQWSTDG------AFLLSGSVDNSCIIWDVNK 134 (519)
Q Consensus 104 ~~v~~~~~s~~~------~~l~~~~~dg~i~vwd~~~ 134 (519)
..+..++|||-| -.|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 3688888899999998653
No 448
>PHA03098 kelch-like protein; Provisional
Probab=90.86 E-value=18 Score=35.91 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=33.5
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCceEEE--ecccccCeEEEEEcCCCCeEEEeeCCC--------eEEEEecCCC
Q 010051 114 DGAFLLSGSVD------NSCIIWDVNKGSVLQI--LDAHFHYVQGVAWDPLSKYVASLSSDR--------TCRIYANRPT 177 (519)
Q Consensus 114 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~ 177 (519)
+++.++.|+.+ ..+..||+.+++.... +....... +++. .++..++.|+.++ .+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 46666667632 4688999887654321 11111111 1222 2455666666432 3777887766
Q ss_pred Cc
Q 010051 178 KS 179 (519)
Q Consensus 178 ~~ 179 (519)
+.
T Consensus 467 ~W 468 (534)
T PHA03098 467 KW 468 (534)
T ss_pred ce
Confidence 53
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.74 E-value=1.7 Score=25.06 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=27.5
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCceEEEecccccCeEEEEE
Q 010051 113 TDGAFLLSGS-VDNSCIIWDVNKGSVLQILDAHFHYVQGVAW 153 (519)
Q Consensus 113 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 153 (519)
|++++|+++. .++.|.++|..+++.+..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777777655 4789999999888887777553 22334444
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.52 E-value=0.25 Score=49.22 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCce-EEEecccccCeEEEEEcC-CCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccc
Q 010051 124 DNSCIIWDVNKGSV-LQILDAHFHYVQGVAWDP-LSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHST 201 (519)
Q Consensus 124 dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (519)
.+-+++-+..+... -..+++..+.|-.+.|.. +...+. -.=|.+.+|++..-+.... +.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq------~~----------- 170 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQ------PQ----------- 170 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccc------cc-----------
Confidence 35566666544321 122355667777777743 222222 2236788998865221110 10
Q ss_pred cCCccccceeeecCCCcceeeEEEEcc---CCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEE
Q 010051 202 DDSKSAKNHLFHDETLPSFFRRLAWSP---DGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVR 278 (519)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~ 278 (519)
..+.........+..+.|.| +..++.++- ..+.+++.+...... ..+.+|...+..++
T Consensus 171 -------l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~----------~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 171 -------LEVTPITPYGSDPQLVSWCPIAVNKVYICYGL----------KGGEIRLLNINRALR--SLFRSHSQRVTDMA 231 (1283)
T ss_pred -------eEEeecCcCCCCcceeeecccccccceeeecc----------CCCceeEeeechHHH--HHHHhcCCCcccHH
Confidence 11111122233444555554 333333332 235666655543322 34455877777766
Q ss_pred EcCCccc-ccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 279 FCPLAFN-LRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 279 ~sp~~~~-l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
|-..|.. ++.-+.|| ..++..+.||.+++|.+
T Consensus 232 ~~~~g~~~l~~lSpDG------tv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDG------TVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHhhchhhheeeCCCC------cEEEEeecCCccceeee
Confidence 5444433 22223333 45666666666666543
No 451
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.47 E-value=14 Score=33.86 Aligned_cols=121 Identities=16% Similarity=0.078 Sum_probs=63.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCe------EEEEEcCC--C--ceE-----EEeccccc--------CeEEEEEcCCCC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNS------CIIWDVNK--G--SVL-----QILDAHFH--------YVQGVAWDPLSK 158 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~------i~vwd~~~--~--~~~-----~~~~~h~~--------~v~~~~~~~~~~ 158 (519)
.-+.+..|.+.+++..+++.+.+|. ++.+++.. + ..+ ..+..-.+ ..-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3456777888866666777777776 65555543 1 011 11111111 334677767777
Q ss_pred eEEEeeCC------CeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCe
Q 010051 159 YVASLSSD------RTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSF 232 (519)
Q Consensus 159 ~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 232 (519)
++++.-.+ ..|..++.. ++......++..... ... -.........+.+|+++|+|+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~--~~~--------------~~~~~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLP--DAN--------------GTSGRRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEcccccccc--ccC--------------ccccccCCCCeEEEEECCCCCE
Confidence 77666556 667777765 332211111110000 000 0011233456789999999997
Q ss_pred EEEecCC
Q 010051 233 LLVPAGS 239 (519)
Q Consensus 233 l~~~~~~ 239 (519)
|+++...
T Consensus 161 l~~~~E~ 167 (326)
T PF13449_consen 161 LFAAMES 167 (326)
T ss_pred EEEEECc
Confidence 7765543
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.38 E-value=9.8 Score=38.28 Aligned_cols=171 Identities=11% Similarity=0.065 Sum_probs=87.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCceE------EEec----------------ccccCeEEEEEcC--CCCeEEEeeCCCeEE
Q 010051 115 GAFLLSGSVDNSCIIWDVNKGSVL------QILD----------------AHFHYVQGVAWDP--LSKYVASLSSDRTCR 170 (519)
Q Consensus 115 ~~~l~~~~~dg~i~vwd~~~~~~~------~~~~----------------~h~~~v~~~~~~~--~~~~l~~~~~dg~i~ 170 (519)
..+|+++. .+.|.||++..-... ..+. .....|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56677765 688999998642211 0110 0112355554432 345788999999999
Q ss_pred EEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc--cCCCeEEEecCCcceeeeecc
Q 010051 171 IYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS--PDGSFLLVPAGSYKISSMSES 248 (519)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--p~g~~l~~~~~~~~~~~~~~~ 248 (519)
+|.+..--...... ....... ...................+++++ ...++||+++....+
T Consensus 128 ~Yyt~~I~~~i~~~-~~~~~~~-----------~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V------ 189 (717)
T PF08728_consen 128 AYYTETIIEAIERF-SEDNDSG-----------FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV------ 189 (717)
T ss_pred EEEHHHHHHHHHhh-ccccccc-----------cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE------
Confidence 99764311000000 0000000 000001111112234567788988 788888887776432
Q ss_pred cceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeC
Q 010051 249 INSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDT 316 (519)
Q Consensus 249 ~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~ 316 (519)
+|..+.+.........-..+...|-+|.|-++... ..|. -++++++-.|.+.+|++
T Consensus 190 --TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d-----~~G~-----v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 --TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD-----PNGH-----VKVVATDISGEVWTFKI 245 (717)
T ss_pred --EEEEEeccccccccccccccccCCCeeEeecCCCC-----Cccc-----eEEEEEeccCcEEEEEE
Confidence 33334442121111112235567888999876421 0110 26778888899988887
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.91 E-value=0.078 Score=48.76 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEc
Q 010051 148 VQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWS 227 (519)
Q Consensus 148 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 227 (519)
.....|.+.+.-++.++.+..+..||-...... ....++....++|.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l---------------------------------e~n~tg~aldm~wD 83 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL---------------------------------ELNPTGKALDMAWD 83 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceec---------------------------------ccCCchhHhhhhhc
Confidence 345667787777888888888888886543211 00112333467888
Q ss_pred cCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEec
Q 010051 228 PDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIAT 307 (519)
Q Consensus 228 p~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~ 307 (519)
-+|..+++.... .+.+++|++.........+.+. ..-.-+.|++.+..++.+ ..
T Consensus 84 kegdvlavlAek---------~~piylwd~n~eytqqLE~gg~-~s~sll~wsKg~~el~ig----------------~~ 137 (615)
T KOG2247|consen 84 KEGDVLAVLAEK---------TGPIYLWDVNSEYTQQLESGGT-SSKSLLAWSKGTPELVIG----------------NN 137 (615)
T ss_pred cccchhhhhhhc---------CCCeeechhhhhhHHHHhccCc-chHHHHhhccCCcccccc----------------cc
Confidence 888777765443 2689999997544333323221 112226788877554444 34
Q ss_pred CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010051 308 LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYC 354 (519)
Q Consensus 308 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 354 (519)
.+.+.|++..+.+....... |...+++++|.+.+..+ .++.|..+
T Consensus 138 ~gn~viynhgtsR~iiv~Gk-h~RRgtq~av~lEd~vi-l~dcd~~L 182 (615)
T KOG2247|consen 138 AGNIVIYNHGTSRRIIVMGK-HQRRGTQIAVTLEDYVI-LCDCDNTL 182 (615)
T ss_pred ccceEEEeccchhhhhhhcc-cccceeEEEecccceee-ecCcHHHH
Confidence 46899999888776666655 88999999999987544 44444433
No 454
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.84 E-value=24 Score=35.63 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCEEEEEEecCCCEEE-EE---cCCCcEEEEEecCC---ccccccccccccccc--cccCcceeEEEEccCCCeEEEEEc
Q 010051 14 KPVLTLDFHPISGLLA-TG---GADYDIKIWLINSG---EKQKKIPTASYQNSL--SYHGSAINILRFSPCGGELIIWKL 84 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la-~~---~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~i~vw~~ 84 (519)
+.+..++|..-+.+|. ++ +.|.-|.|...... ..+..+..+.....+ ..|-+.++.+.|.-++|.|...-.
T Consensus 17 g~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~ip~f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~ 96 (1243)
T COG5290 17 GDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFEIPFFPDKLLSFKHFHVLTFEYFLIDEGDIIHLVN 96 (1243)
T ss_pred CChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEeccCCcchHhhhhhhhhhhheeeEEecCCcEEEEEc
Confidence 4566788876666554 32 33444777765432 222222222111111 135667788888888776654333
Q ss_pred ccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 010051 85 HTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDV 132 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 132 (519)
+.......+..+.. -...|...+||.|.+.++....+..|.+++-
T Consensus 97 dp~p~e~~~eivG~---v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 97 DPTPAELEMEIVGK---VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred CCCcccchhhhhcc---ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 22222222222222 4567999999999998888878888888763
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.82 E-value=3.4 Score=33.62 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.1
Q ss_pred ccEEEEEEcCCC------CEEEEEeCCCcEEEEEecC
Q 010051 331 AAITDIAWSNNA------RYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 331 ~~i~~~~~s~~g------~~l~~~~~dg~i~vwd~~~ 361 (519)
..|..++|||-| -+|++.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999965 4789999999999998664
No 456
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.56 E-value=25 Score=35.54 Aligned_cols=73 Identities=8% Similarity=0.104 Sum_probs=44.6
Q ss_pred CCeEEEEEc--CCcccccccCCCCcccccceEEEEEecCCeEEEEeCCC--CCceEEEeccccccEEEEEEcCCC---C-
Q 010051 272 KPVVAVRFC--PLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTES--VPPIAILAGLHYAAITDIAWSNNA---R- 343 (519)
Q Consensus 272 ~~v~~~~~s--p~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~i~~~~~s~~g---~- 343 (519)
...+.++++ ... ++|++++....|.||-... .+....-...|...|.+++|-++. .
T Consensus 164 ~SaWGLdIh~~~~~----------------rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G 227 (717)
T PF08728_consen 164 ASAWGLDIHDYKKS----------------RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNG 227 (717)
T ss_pred CceeEEEEEecCcc----------------eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCcc
Confidence 367777777 443 4455555555666654332 111111011156678899987754 2
Q ss_pred --EEEEEeCCCcEEEEEec
Q 010051 344 --YLALSSQDGYCTLVEFE 360 (519)
Q Consensus 344 --~l~~~~~dg~i~vwd~~ 360 (519)
+|++++-.|.+.+|++.
T Consensus 228 ~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 228 HVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEeccCcEEEEEEE
Confidence 78889999999999883
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=8.7 Score=40.90 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=32.3
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCccc
Q 010051 329 HYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELG 365 (519)
Q Consensus 329 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~ 365 (519)
+..+|..++.......|.+-+..|+|.+|++......
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCcc
Confidence 6789999999988889999999999999999875443
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.14 E-value=0.11 Score=47.92 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=87.2
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEecCCccccccccccccccccccCcceeEEEEccCCCeEEEEEcccCCCccccee
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKV 95 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~ 95 (519)
-....|-|.+.-|+.++.+..+..||-....... .........+.+...+...+......+.+.+|++.+.... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq----q 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ----Q 111 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----H
Confidence 3455678888778888888888888865433222 1111111111111122222222334588999999765321 1
Q ss_pred eeccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCC
Q 010051 96 LKNLSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDR 167 (519)
Q Consensus 96 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 167 (519)
+..-..|.... +.|++.+..++.+...|.+.+++..+.+.+...-.|...+++++|.+.+. .+.++.|.
T Consensus 112 LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 11111122222 78999999999999999999999887776655555888999999998764 44444443
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=23 Score=33.86 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.7
Q ss_pred cEEEEEEcCCC---CEEEEEeCCCcEEEEEecCC
Q 010051 332 AITDIAWSNNA---RYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 332 ~i~~~~~s~~g---~~l~~~~~dg~i~vwd~~~~ 362 (519)
.+..++|+|+. ..|..-+.|..||+|++...
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 35567888875 56777778888899888654
No 460
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.41 E-value=2 Score=24.34 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-C--CeEEEE
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSV-D--NSCIIW 130 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~-d--g~i~vw 130 (519)
.........|||||++|+.++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556788999999998876654 4 555444
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.06 E-value=11 Score=31.38 Aligned_cols=42 Identities=5% Similarity=-0.014 Sum_probs=29.2
Q ss_pred ceEEEEeccCCCc-ccccCCCCCCCeEEEEEcCCcccccccCCC
Q 010051 250 NSAYIFSRKDLSR-PALQLPGASKPVVAVRFCPLAFNLRESNSA 292 (519)
Q Consensus 250 ~~i~i~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 292 (519)
..|.+|++..... +...+. .-+.|..+.++..|.++++--.+
T Consensus 38 ~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 38 CKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEee
Confidence 5899999974333 333333 44789999999999887765443
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=18 Score=31.78 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=104.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEE---ecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCc
Q 010051 103 RKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQI---LDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 103 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
.+-+..+.++ +++.+.+..+.-+++.|+.+...... +.. .+--.++.. .|++..++..|.-+.+.|+.....
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 3456677777 56777777778899999987653332 222 133344444 488998888777788889877643
Q ss_pred cccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccC
Q 010051 180 KGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKD 259 (519)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~ 259 (519)
...... . . .....-..++.| |++..++..+ +.+.+.|+.+
T Consensus 161 P~lagr-------y-------------------a--~~~~d~~~v~IS--Gn~AYvA~~d----------~GL~ivDVSn 200 (370)
T COG5276 161 PQLAGR-------Y-------------------A--LPGGDTHDVAIS--GNYAYVAWRD----------GGLTIVDVSN 200 (370)
T ss_pred ceeeee-------e-------------------c--cCCCCceeEEEe--cCeEEEEEeC----------CCeEEEEccC
Confidence 211100 0 0 000001123333 3444443333 5778888877
Q ss_pred CCcccccCCCCCC-CeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEE-E
Q 010051 260 LSRPALQLPGASK-PVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDI-A 337 (519)
Q Consensus 260 ~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~-~ 337 (519)
...+...-.-..+ .+..+..+++.. +..-.+--+.+-|..+.+....+..-....+.++ .
T Consensus 201 p~sPvli~~~n~g~g~~sv~vsdnr~------------------y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~ 262 (370)
T COG5276 201 PHSPVLIGSYNTGPGTYSVSVSDNRA------------------YLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSIST 262 (370)
T ss_pred CCCCeEEEEEecCCceEEEEecCCee------------------EEEEcccceEEEecCCCCCceEeeccccCCcccccc
Confidence 6655443222222 566666666432 2222222355666655543333322112222222 3
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 338 WSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 338 ~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
+.-.+++...+..+.-+.+-|+.+.
T Consensus 263 v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 263 VPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eecccceeeeeccccCceeEeccCC
Confidence 3335667777777777778787765
No 463
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.93 E-value=16 Score=31.57 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=30.2
Q ss_pred EEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeC-C--CeEEEEecCC
Q 010051 127 CIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSS-D--RTCRIYANRP 176 (519)
Q Consensus 127 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~ 176 (519)
-.+||+.+++....-........+-.+.+||++|.+|+. + ..+++++...
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC
Confidence 457999887653322222223333456789999998876 2 3477776544
No 464
>PHA02790 Kelch-like protein; Provisional
Probab=87.73 E-value=29 Score=33.92 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=45.2
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCceEEE--ecccccCeEEE
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGSVDN---SCIIWDVNKGSVLQI--LDAHFHYVQGV 151 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~--~~~h~~~v~~~ 151 (519)
..+..|+..+. .|..+..+.........+. -+|+..+.|+.++ .+..||..+.+.... +.........+
T Consensus 331 ~sve~ydp~~n----~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~ 404 (480)
T PHA02790 331 TSVERWFHGDA----AWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL 404 (480)
T ss_pred CceEEEECCCC----eEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE
Confidence 34666765432 3444444432222222233 2577777777553 477888877654331 11111111122
Q ss_pred EEcCCCCeEEEeeCCCeEEEEecCCCCc
Q 010051 152 AWDPLSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 152 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
. -+++..+.| |.+.+||..+++.
T Consensus 405 ~--~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 405 V--FGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred E--ECCEEEEEC---CceEEecCCCCcE
Confidence 2 235555555 3567788876653
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.52 E-value=39 Score=35.12 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEe
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILA 326 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~ 326 (519)
..++.+..+|.++++|.++|+.+....
T Consensus 460 ~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 460 PALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEECCCCEEEEEECCCCCEEeece
Confidence 468888899999999999999886654
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.32 E-value=21 Score=31.91 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=37.0
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCC-----CEEEEEe-CCCeEEEEEcCCCceEEEecc
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDG-----AFLLSGS-VDNSCIIWDVNKGSVLQILDA 143 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 143 (519)
-+|.+||+.+.+....+.....+....+.+..+.+.... .+++.+. ..+-|.|+|+.+++.-+.+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 356667777663322222222222245667778776622 2444333 345899999999987666554
No 467
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=87.11 E-value=24 Score=32.37 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCeEEEEEcccCCCcccceeeeccc--cCCCCeEEEEEcCC--C--CEEEEEeCCCeEEEEEcCCCce----EE------
Q 010051 76 GGELIIWKLHTTETGQAWKVLKNLS--FHRKDVLDLQWSTD--G--AFLLSGSVDNSCIIWDVNKGSV----LQ------ 139 (519)
Q Consensus 76 ~~~i~vw~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~--~--~~l~~~~~dg~i~vwd~~~~~~----~~------ 139 (519)
+..+.+|...+++ ..+++. ....-+.++.|-.+ . .+.-++..++.++++-...... +.
T Consensus 228 g~~lhvy~w~~~~------~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~k 301 (476)
T KOG0918|consen 228 GSHLHVYQWSPGE------LKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLK 301 (476)
T ss_pred eeeeEEEecCCcc------ceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccc
Confidence 3678889888773 333332 22344566777432 2 2333444556666665443211 11
Q ss_pred ----EecccccCeEEEEEcCCCCeEEEee-CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCC---cccccee
Q 010051 140 ----ILDAHFHYVQGVAWDPLSKYVASLS-SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDS---KSAKNHL 211 (519)
Q Consensus 140 ----~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 211 (519)
.+..-.+-|+.+-.|-|.++|+.+. .-|.|+.||+...........-+............+.... .......
T Consensus 302 v~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~ 381 (476)
T KOG0918|consen 302 VENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALY 381 (476)
T ss_pred cccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccce
Confidence 1122335688888888888886655 4789999999876543222111111111111111111111 1122222
Q ss_pred eecCCCcceeeEEEEccCCCeEEEecC
Q 010051 212 FHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 212 ~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
+......+...-+.+|-||+.|+++++
T Consensus 382 vKGrkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 382 VKGRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred ecCccccCCceeEEeccCCcEEEEEch
Confidence 334455666778999999999998764
No 468
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.05 E-value=1.7 Score=22.30 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=21.1
Q ss_pred CCEEEEEEecCCCEEEEEcCCCcEEEEE
Q 010051 14 KPVLTLDFHPISGLLATGGADYDIKIWL 41 (519)
Q Consensus 14 ~~V~~~~~sp~~~~la~~~~dg~i~iwd 41 (519)
+.|.+++.+ ..+++++.+-+.+|||.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 468888887 45899998889999983
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=86.80 E-value=25 Score=32.30 Aligned_cols=271 Identities=14% Similarity=0.139 Sum_probs=124.4
Q ss_pred cCCCCCEEEEEEecCCCEEEEEcCCCcEEEEEecC-CccccccccccccccccccCcceeEEEEccCCCeE-----EEEE
Q 010051 10 WHDTKPVLTLDFHPISGLLATGGADYDIKIWLINS-GEKQKKIPTASYQNSLSYHGSAINILRFSPCGGEL-----IIWK 83 (519)
Q Consensus 10 ~~h~~~V~~~~~sp~~~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i-----~vw~ 83 (519)
..-...+++|+|....+-+|+|. +|. ||.... |+.-..+.. .+......+..+.|.+..+.+ .|+.
T Consensus 42 ~~~~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~-----~~~~~~~~l~~v~~~~~~~~~~G~~g~i~~ 113 (334)
T PRK13684 42 LPTEANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSL-----DLPEENFRLISISFKGDEGWIVGQPSLLLH 113 (334)
T ss_pred cCCCCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECcc-----CCcccccceeeeEEcCCcEEEeCCCceEEE
Confidence 34466899999986666677775 443 444433 322211110 010112235566665432111 1333
Q ss_pred cccCCCcccceeeec---cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cccccCeEEEEEcCCCCe
Q 010051 84 LHTTETGQAWKVLKN---LSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQIL-DAHFHYVQGVAWDPLSKY 159 (519)
Q Consensus 84 ~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 159 (519)
. ...+..|+.+.. +.++. ....++.+ +..+ .++..|.|..=+ +.|+.=..+ ..-...+.++.+.|++.+
T Consensus 114 S--~DgG~tW~~~~~~~~~~~~~--~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~ 186 (334)
T PRK13684 114 T--TDGGKNWTRIPLSEKLPGSP--YLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKY 186 (334)
T ss_pred E--CCCCCCCeEccCCcCCCCCc--eEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeE
Confidence 2 233555655532 22222 22222222 2233 334445443222 233322222 222456888999998766
Q ss_pred EEEeeCCCeEEE-EecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecC
Q 010051 160 VASLSSDRTCRI-YANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG 238 (519)
Q Consensus 160 l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 238 (519)
++++ ..|.+.. ++-. ++. +. .........++.+.+.++++.++++..
T Consensus 187 v~~g-~~G~i~~s~~~g-g~t-------W~-----------------------~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 187 VAVS-SRGNFYSTWEPG-QTA-------WT-----------------------PHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred EEEe-CCceEEEEcCCC-CCe-------EE-----------------------EeeCCCcccceeeeEcCCCCEEEEecC
Confidence 6554 4564432 1111 110 00 000112345778899999988777544
Q ss_pred CcceeeeecccceEEEEeccCCCccccc--CC--CCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEE
Q 010051 239 SYKISSMSESINSAYIFSRKDLSRPALQ--LP--GASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIY 314 (519)
Q Consensus 239 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~--~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vw 314 (519)
. .+.+-.. +....... .+ .....+..+.+.|++. +++++.+|.+. .
T Consensus 235 G-----------~~~~~s~-d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-----------------~~~~G~~G~v~-~ 284 (334)
T PRK13684 235 G-----------QIRFNDP-DDLESWSKPIIPEITNGYGYLDLAYRTPGE-----------------IWAGGGNGTLL-V 284 (334)
T ss_pred C-----------EEEEccC-CCCCccccccCCccccccceeeEEEcCCCC-----------------EEEEcCCCeEE-E
Confidence 2 2221111 11111111 11 1123567888888653 34444455444 3
Q ss_pred eCCCCCceEEEec--cccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010051 315 DTESVPPIAILAG--LHYAAITDIAWSNNARYLALSSQDGYCTLVE 358 (519)
Q Consensus 315 d~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd 358 (519)
....++.-..... .-....+.+.|..+++.+++ +..|.|..|+
T Consensus 285 S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 285 SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 3343433333221 02235778888777776665 4578887765
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=53 Score=35.51 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEE--EcCCC---c-e----------------EEEec-ccccCeEEEEEcCCCC
Q 010051 102 HRKDVLDLQWSTDGAFLLSGSVDNSCIIW--DVNKG---S-V----------------LQILD-AHFHYVQGVAWDPLSK 158 (519)
Q Consensus 102 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw--d~~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~ 158 (519)
....|+|+....+|+.+++| .||.|+-. ....| + + +-.+. .+..+|..+......+
T Consensus 177 dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 35678899988888866655 55644322 11111 1 0 11122 5667999999988888
Q ss_pred eEEEeeCCCeEEEEecCCCC
Q 010051 159 YVASLSSDRTCRIYANRPTK 178 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~~ 178 (519)
.+++-+..|+|.+|++....
T Consensus 256 IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eeeeeccCceEEEEEccCCC
Confidence 89999999999999998743
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=33 Score=32.88 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=47.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc---------CCCceEEE----------ec-ccccCeEEEEEcCCC---CeE
Q 010051 104 KDVLDLQWSTDGAFLLSGSVDNSCIIWDV---------NKGSVLQI----------LD-AHFHYVQGVAWDPLS---KYV 160 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~----------~~-~h~~~v~~~~~~~~~---~~l 160 (519)
-.|..+..++.|..++-.+.+|.+.++=. +.|+.... |. ...-.+..++|+|++ ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 45778888999999999999997665432 22322111 11 111245667888864 467
Q ss_pred EEeeCCCeEEEEecCCC
Q 010051 161 ASLSSDRTCRIYANRPT 177 (519)
Q Consensus 161 ~~~~~dg~i~iwd~~~~ 177 (519)
..-+.|..||+||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 77777888888887654
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=20 Score=29.72 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCEEEEEcC--CCcEEEEEecCCcccccccccc---ccccccccCcceeEEEEccCCCeEEEEEcccCCCcccceeeec
Q 010051 24 ISGLLATGGA--DYDIKIWLINSGEKQKKIPTAS---YQNSLSYHGSAINILRFSPCGGELIIWKLHTTETGQAWKVLKN 98 (519)
Q Consensus 24 ~~~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~ 98 (519)
+|.++.+.+. ...|++||+.+|+.+...+... ....+..-.+.++.+.|. ++.-..+|..+- +++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--egvaf~~d~~t~------~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--EGVAFKYDADTL------EELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec--cceeEEEChHHh------hhhcc
Confidence 4556666554 3469999999998776654331 112233334455555553 566666776554 33333
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 010051 99 LSFHRKDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSV 137 (519)
Q Consensus 99 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 137 (519)
+. -.+.=+.++ .|+..|+.+....+++.-|..+-..
T Consensus 127 ~~-y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 127 FS-YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred cc-cCCcceeee--cCCcceEeeCCceEEEecCHHHhhh
Confidence 32 233345555 4566677766666777777765443
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=67 Score=34.69 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 010051 104 KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNK 134 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 134 (519)
.....++|+|.-.+++.+...|.|.++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4567789999999999999999999997543
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.50 E-value=32 Score=30.57 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=46.0
Q ss_pred ceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccc
Q 010051 250 NSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLH 329 (519)
Q Consensus 250 ~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 329 (519)
+-|-+||............+.-..-+.|+..|...- .-.| .+|+.--.||+|..||..+++.+..+....
T Consensus 222 G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG----~~sg------~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 222 GYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFG----SLSG------ALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred ceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhC----CCCC------CeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 467777765322111122333445566666664311 1112 556666679999999999998887776522
Q ss_pred cc-----cEEEEEEcC
Q 010051 330 YA-----AITDIAWSN 340 (519)
Q Consensus 330 ~~-----~i~~~~~s~ 340 (519)
.. .++.|.|..
T Consensus 292 G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 292 NHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEecCeEEeeeCC
Confidence 22 245666654
No 475
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.22 E-value=27 Score=29.56 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=34.7
Q ss_pred eEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcC
Q 010051 300 RLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSN 340 (519)
Q Consensus 300 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~ 340 (519)
++.+++-..++|..+|..+|+.+..+.- ....|++++|--
T Consensus 224 ~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgG 263 (310)
T KOG4499|consen 224 NLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGG 263 (310)
T ss_pred cEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecC
Confidence 6677777889999999999999999988 678899999954
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.07 E-value=38 Score=31.08 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=89.9
Q ss_pred cCeEEEEEcCCCCeEEEeeCCCe------EEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcc
Q 010051 146 HYVQGVAWDPLSKYVASLSSDRT------CRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPS 219 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (519)
+.+..|.+.+++..+++.+.+|. +..+++..... ............+.... ...+. ....
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-----------G~~~~--~~~~ 85 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-----------GQPFP--KNGL 85 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-----------CCcCC--cCCC
Confidence 56788899877777888888887 55555544110 00000000000000000 00000 0011
Q ss_pred eeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCc-----ccc--------cCCCCCCCeEEEEEcCCcccc
Q 010051 220 FFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSR-----PAL--------QLPGASKPVVAVRFCPLAFNL 286 (519)
Q Consensus 220 ~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-----~~~--------~~~~~~~~v~~~~~sp~~~~l 286 (519)
...++++.++|.++++.-.... ......|+.++...... +.. .-...+.....++++|+|..|
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~----~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT----GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC----CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEE
Confidence 3446777777777776433300 00114555565431110 000 112345678899999999754
Q ss_pred cccCCCCcccccceEEEEEecCCeEEEEeCCC-CCceEE--Eecc------ccccEEEEEEcCCCCEEEEEe-----CCC
Q 010051 287 RESNSAGFFKLPYRLIFAIATLNSLYIYDTES-VPPIAI--LAGL------HYAAITDIAWSNNARYLALSS-----QDG 352 (519)
Q Consensus 287 ~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~-~~~~~~--~~~~------~~~~i~~~~~s~~g~~l~~~~-----~dg 352 (519)
...............-...+..-.|..||..+ +..... +... ....|+.+.+-+++++|+.=- ...
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGN 241 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccc
Confidence 33322110000000000011112344556554 322222 2210 246789999999999777532 234
Q ss_pred cEEEEEecC
Q 010051 353 YCTLVEFEN 361 (519)
Q Consensus 353 ~i~vwd~~~ 361 (519)
.++|+.+.-
T Consensus 242 ~~ri~~v~l 250 (326)
T PF13449_consen 242 YKRIYRVDL 250 (326)
T ss_pred eEEEEEEEc
Confidence 566666653
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.01 E-value=30 Score=35.00 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=69.8
Q ss_pred EEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEE
Q 010051 223 RLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLI 302 (519)
Q Consensus 223 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~ 302 (519)
-+.|--|..+.+++.... .....+++|.....-. .......+.-..+.|-|.|..+++...||.
T Consensus 206 ~i~wrgD~~y~~v~r~Ee------~prra~rvysreg~ld--s~sep~~g~e~~LSWkpqgS~~ati~td~~-------- 269 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEE------RPRRAFRVYSREGQLD--SASEPVTGMEHQLSWKPQGSKYATIGTDGC-------- 269 (1243)
T ss_pred EEEEccCcceeeecchhc------ccccceeeeccccccc--cccCCcccchhccccccCCceeeeeccCCC--------
Confidence 355666666666654331 1224566665431100 001111223345789999977665544431
Q ss_pred EEEecCCeEEEEeCCC---CCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCCcccceeeecCCcccccC
Q 010051 303 FAIATLNSLYIYDTES---VPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFENDELGIPISLSGNKVSKDE 379 (519)
Q Consensus 303 ~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 379 (519)
+..-.|.++.... |+.-.... ....+..++|+-....++.+ ....|++|-..+-.+ .+.... .-.
T Consensus 270 ---~~S~~ViFfErNGLrHGef~lr~~--~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW----YLK~e~--~ip 337 (1243)
T COG5290 270 ---STSESVIFFERNGLRHGEFDLRVG--CDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW----YLKVER--QIP 337 (1243)
T ss_pred ---CCcceEEEEccCCcccCCccccCC--chhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE----EEEEee--cCC
Confidence 1223566665432 22211111 24456677887776666654 457899998765432 221111 123
Q ss_pred CCCcccccCCc
Q 010051 380 NKSPLVTKSED 390 (519)
Q Consensus 380 ~~~~~~~s~~~ 390 (519)
.+.-+.|+|..
T Consensus 338 ~~s~vkwhpe~ 348 (1243)
T COG5290 338 GISYVKWHPEE 348 (1243)
T ss_pred Ccceeeecccc
Confidence 45556777754
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.58 E-value=12 Score=37.43 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=42.0
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC----CceEEE--ecc--------------------cccCeEEEEEcC----CCCeEEE
Q 010051 113 TDGAFLLSGSVDNSCIIWDVNK----GSVLQI--LDA--------------------HFHYVQGVAWDP----LSKYVAS 162 (519)
Q Consensus 113 ~~~~~l~~~~~dg~i~vwd~~~----~~~~~~--~~~--------------------h~~~v~~~~~~~----~~~~l~~ 162 (519)
++...|+.+..||.+....... +..... +.. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888999988887764 211111 110 123455566666 6788999
Q ss_pred eeCCCeEEEEecCCCCc
Q 010051 163 LSSDRTCRIYANRPTKS 179 (519)
Q Consensus 163 ~~~dg~i~iwd~~~~~~ 179 (519)
.+.|+.+|+||+.+++.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999874
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.51 E-value=44 Score=33.61 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=28.9
Q ss_pred cCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCc
Q 010051 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKS 179 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 179 (519)
..++++.-+|.++.++.++.||+|++|+......
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 4567788889999999999999999999876543
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.44 E-value=24 Score=30.50 Aligned_cols=89 Identities=9% Similarity=0.013 Sum_probs=53.5
Q ss_pred eEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEEecCCcccceeeecCCcccccCCCCcccc
Q 010051 310 SLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD---GYCTLVEFENDELGIPISLSGNKVSKDENKSPLVT 386 (519)
Q Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (519)
.-.+||+.+++....... ....+.+-++-+||++|.+|+.- ..+++++-........+...............+..
T Consensus 47 ~s~~yD~~tn~~rpl~v~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCC-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 345799888765432222 33444555788999999998753 34788775441112223222221223445566777
Q ss_pred cCCccEEEeecCC
Q 010051 387 KSEDMIIEASTND 399 (519)
Q Consensus 387 s~~~~~l~~~~~d 399 (519)
-+||+.|+.|+..
T Consensus 126 L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 126 LPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCEEEEeCcC
Confidence 8899999998877
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.43 E-value=48 Score=31.85 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCc--eEEEe----ccccccEEEEEEcCCC---
Q 010051 272 KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPP--IAILA----GLHYAAITDIAWSNNA--- 342 (519)
Q Consensus 272 ~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~~~~~----~~~~~~i~~~~~s~~g--- 342 (519)
...+.|+|.|+|. ++++--..|.|++++..++.. +..+. .........|+|+|+-
T Consensus 30 ~~Pw~maflPDG~----------------llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~ 93 (454)
T TIGR03606 30 NKPWALLWGPDNQ----------------LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQE 93 (454)
T ss_pred CCceEEEEcCCCe----------------EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcccc
Confidence 3567899999983 333333357888887654432 11111 1024667899999874
Q ss_pred ---CEEEEEe-C---------CCcEEEEEecCC--cccc-eeeecCCcccccCCCCcccccCCccEEEeecCC
Q 010051 343 ---RYLALSS-Q---------DGYCTLVEFEND--ELGI-PISLSGNKVSKDENKSPLVTKSEDMIIEASTND 399 (519)
Q Consensus 343 ---~~l~~~~-~---------dg~i~vwd~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 399 (519)
.+|...- . ...|.-|.+... .+.. ...+.+........-..+.|.|||.+.++.++.
T Consensus 94 ~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 94 KGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2343331 1 223444555421 1111 111112111112345678899999877766655
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.41 E-value=33 Score=29.92 Aligned_cols=212 Identities=12% Similarity=0.026 Sum_probs=124.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccc
Q 010051 104 KDVLDLQWSTDGAFLLSGSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVE 183 (519)
Q Consensus 104 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 183 (519)
.....++-.|||..-+++...+.|--.|..+|+....--+....-..|...||+..-++-+.. -|.-.|.++.+....
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f- 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF- 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe-
Confidence 445677888999888888888888888998988765544444556677888888766654333 344445444321110
Q ss_pred cccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcc
Q 010051 184 KMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRP 263 (519)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 263 (519)
.+....-........|.+.|...+++... ......-..+.+.+|+...
T Consensus 140 ---------------------------~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaPq---- 187 (353)
T COG4257 140 ---------------------------PLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAPQ---- 187 (353)
T ss_pred ---------------------------ecccccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccCC----
Confidence 01111223446678999999988886532 1112223334555555432
Q ss_pred cccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec--cccccEEEEEEcCC
Q 010051 264 ALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG--LHYAAITDIAWSNN 341 (519)
Q Consensus 264 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~i~~~~~s~~ 341 (519)
...-+.|+..|+|. ..++.-.++.|-..|..++... .+.. .....-..+--+|.
T Consensus 188 -------G~gpyGi~atpdGs----------------vwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpi 243 (353)
T COG4257 188 -------GGGPYGICATPDGS----------------VWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPI 243 (353)
T ss_pred -------CCCCcceEECCCCc----------------EEEEeccccceEEcccccCCcc-eecCCCcccccccccccCcc
Confidence 22345677788873 3444444556666676655221 2211 11233455666778
Q ss_pred CCEEEEEeCCCcEEEEEecCCcccceeeecCCc
Q 010051 342 ARYLALSSQDGYCTLVEFENDELGIPISLSGNK 374 (519)
Q Consensus 342 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 374 (519)
|+.-++....+.+..+|-.... -..+.+++..
T Consensus 244 g~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ 275 (353)
T COG4257 244 GRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSK 275 (353)
T ss_pred CcEEEeccCCceeeEeCccccc-ceeeeCCCCC
Confidence 8888887777888888766554 2445555543
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.16 E-value=57 Score=31.86 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCccccc
Q 010051 123 VDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTD 202 (519)
Q Consensus 123 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (519)
....+.++|. .|.....+.........+...++|.+++..+ ..+..+|+..... ....++...
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~-~~~~l~~~~------------- 188 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVI-WEYDLPGGY------------- 188 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EE-EEEE--TTE-------------
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEE-EeeecCCcc-------------
Confidence 4566777774 6666555433222221166678888776555 7777777754311 000000000
Q ss_pred CCccccceeeecCCCcceeeEEEEccCCCeEEEecC-------------CcceeeeecccceEEEEeccCCCccccc---
Q 010051 203 DSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLVPAG-------------SYKISSMSESINSAYIFSRKDLSRPALQ--- 266 (519)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-------------~~~~~~~~~~~~~i~i~~~~~~~~~~~~--- 266 (519)
. ..-..+...|+|.+|+.+.. ...+..+......++.|++.+.-.+...
T Consensus 189 ----------~-----~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~ 253 (477)
T PF05935_consen 189 ----------Y-----DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVL 253 (477)
T ss_dssp ----------E------B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTG
T ss_pred ----------c-----ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccccc
Confidence 0 00125677788888887762 2234445555566788888654322221
Q ss_pred -------CC---CCC--CCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 267 -------LP---GAS--KPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 267 -------~~---~~~--~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
.. ... ..++++.+.+... .+++++-.-..|...|..+++....+..
T Consensus 254 ~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd---------------~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 254 KPYPYGDISGSGGGRDWLHINSIDYDPSDD---------------SIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp GT--SSSSS-SSTTSBS--EEEEEEETTTT---------------EEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred ccccccccccCCCCCCccccCccEEeCCCC---------------eEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 00 011 2478999988432 2233333344666666666655555443
No 484
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.05 E-value=5 Score=21.51 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCceEEE
Q 010051 116 AFLLSGSVDNSCIIWDVNKGSVLQI 140 (519)
Q Consensus 116 ~~l~~~~~dg~i~vwd~~~~~~~~~ 140 (519)
..++.++.+|.+..+|..+|+.+..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3678888899999999999887654
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.01 E-value=53 Score=31.45 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=25.1
Q ss_pred cCeEEEEEcCCCCeEEEeeCCCeEEEEecCC
Q 010051 146 HYVQGVAWDPLSKYVASLSSDRTCRIYANRP 176 (519)
Q Consensus 146 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 176 (519)
..|..++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999988889999999999999999975
No 486
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=79.71 E-value=66 Score=31.73 Aligned_cols=254 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEEccCCCeEEEEEcccCCCcccceeeeccccC-CCCeEEEEEcCCC-CEEEEEeC--CCeEEEEEcCCCceEEEeccc
Q 010051 69 ILRFSPCGGELIIWKLHTTETGQAWKVLKNLSFH-RKDVLDLQWSTDG-AFLLSGSV--DNSCIIWDVNKGSVLQILDAH 144 (519)
Q Consensus 69 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h 144 (519)
.+-+..++|.+....+..... ......-+. .....++++..+| .+|+.|+. |+.+..|....-+.+..+...
T Consensus 224 ~~lL~~e~G~l~~l~l~~~~~----~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~ 299 (504)
T PF10433_consen 224 RILLQDEDGDLYLLTLDNDGG----SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNW 299 (504)
T ss_dssp EEEEEETTSEEEEEEEEEEEE----EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred EEEEEeCCCeEEEEEEEECCC----eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCc
Q ss_pred ccCeEEEEEc----CCCC------eEEEee---CCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccce-
Q 010051 145 FHYVQGVAWD----PLSK------YVASLS---SDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNH- 210 (519)
Q Consensus 145 ~~~v~~~~~~----~~~~------~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (519)
++|.++++. .... .|++++ .+|.+++.. ......
T Consensus 300 -~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr-------------------------------~Gi~~~~ 347 (504)
T PF10433_consen 300 -GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR-------------------------------NGIGIEG 347 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE-------------------------------ESBEEE-
T ss_pred -CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe-------------------------------ccCCcee
Q ss_pred -eeecCCCcceeeEEEEccC----CCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEE---EEcCC
Q 010051 211 -LFHDETLPSFFRRLAWSPD----GSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAV---RFCPL 282 (519)
Q Consensus 211 -~~~~~~~~~~i~~~~~sp~----g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~---~~sp~ 282 (519)
.......++ +..+-.-+. ..+++++... .-.++.+.. ......+..+ .|..+
T Consensus 348 ~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~-----------~T~vl~~~~--------~d~~e~~~e~~~~~f~~~ 407 (504)
T PF10433_consen 348 LELASSELPG-VTGIWTLKLSSSDHSYLVLSFPN-----------ETRVLQISE--------GDDGEEVEEVEEDGFDTD 407 (504)
T ss_dssp -EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESS-----------EEEEEEES------------SSEEEEE---TS-SS
T ss_pred eeeeccCCCC-ceEEEEeeecCCCceEEEEEcCC-----------ceEEEEEec--------ccCCcchhhhhhccCCCC
Q ss_pred cccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 010051 283 AFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGYCTLVEFEND 362 (519)
Q Consensus 283 ~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~~ 362 (519)
...++++...+ +.++-....+ |++.+...++............|.+.+. ++.+++.+-.++.+.++.+...
T Consensus 408 ~~Tl~~~~~~~------~~ivQVt~~~-i~l~~~~~~~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~ 478 (504)
T PF10433_consen 408 EPTLAAGNVGD------GRIVQVTPKG-IRLIDLEDGKLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDN 478 (504)
T ss_dssp S-EEEEEEETT------TEEEEEESSE-EEEEESSSTSEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETT
T ss_pred CCCeEEEEcCC------CeEEEEecCe-EEEEECCCCeEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECC
Q ss_pred cccceeeecCCcccccCCCCcccccC
Q 010051 363 ELGIPISLSGNKVSKDENKSPLVTKS 388 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 388 (519)
............. ....+.++..+|
T Consensus 479 ~~~~~~~~~~~~~-~~~eis~l~i~p 503 (504)
T PF10433_consen 479 KISVSDNDETILE-LDNEISCLSIEP 503 (504)
T ss_dssp EEEEEEE----EE--SS-EEEEE---
T ss_pred ceeeeeecccccc-CCCceEEEEeCC
No 487
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.62 E-value=33 Score=30.45 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=53.4
Q ss_pred CeEEEEEcccCCCcccceeeeccccCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCceEEEecc-----cc
Q 010051 77 GELIIWKLHTTETGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSGS------VDNSCIIWDVNKGSVLQILDA-----HF 145 (519)
Q Consensus 77 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~-----h~ 145 (519)
..|++||.... +-..--.+-.+.|+.|.|..+.+.++.|. ....+..||+.+.... .+.. -.
T Consensus 16 ~~lC~yd~~~~------qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNS------QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCC------EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC
Confidence 45888997655 22222233567899999986666666664 3557888998776542 2322 23
Q ss_pred cCeEEEEEcC-CCC-eEEEee-CCCe--EEEEe
Q 010051 146 HYVQGVAWDP-LSK-YVASLS-SDRT--CRIYA 173 (519)
Q Consensus 146 ~~v~~~~~~~-~~~-~l~~~~-~dg~--i~iwd 173 (519)
++|..+.+.. ++. ..+.|. .+|. |..||
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 6788887743 333 333433 3343 55554
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.31 E-value=19 Score=25.28 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=29.5
Q ss_pred EeCCCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEee
Q 010051 121 GSVDNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS 164 (519)
Q Consensus 121 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 164 (519)
+..+|.+..||..+++....+.+- ...+.+++++++..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence 445788999999998765545443 4668999999999776653
No 489
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.20 E-value=9.6 Score=21.76 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=19.5
Q ss_pred EEEEecCCeEEEEeCCCCCceEEEec
Q 010051 302 IFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 302 ~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
+++...++.|.++|..+++.+..+..
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 34444578999999998888777765
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.50 E-value=38 Score=28.20 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=35.3
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEE-eeCCCeEEEEecCCCC
Q 010051 114 DGAFLLSGSV--DNSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVAS-LSSDRTCRIYANRPTK 178 (519)
Q Consensus 114 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~ 178 (519)
+|.++.+.+. ...|++||+.+|+.+..-.-....+..=-...-+.++.. .-.+|.-..+|.++.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence 4555555554 347999999999877654322112211111112333332 2347777888877654
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.98 E-value=10 Score=26.63 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=29.7
Q ss_pred cCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEe
Q 010051 307 TLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSS 349 (519)
Q Consensus 307 ~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 349 (519)
.+|.+..||..+++....+.+ -.--+.+++++|+.+|+.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEEe
Confidence 346899999998876655555 34578999999999877763
No 492
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=77.88 E-value=58 Score=30.02 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=65.3
Q ss_pred ceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCC-----CCeEEEEEcCCcccccccCCCC
Q 010051 219 SFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGAS-----KPVVAVRFCPLAFNLRESNSAG 293 (519)
Q Consensus 219 ~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~~g 293 (519)
++...++|...|.-|+++..-.. +...+... .....+..+. .-.+.+...++|....+-+...
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG----------L~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk 182 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG----------LLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSK 182 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee----------eEEECCCC--CcceeccccccCeeeeecCceeEcCCCeEEEeccccc
Confidence 44558999998866666554432 22222221 1111111111 1123455666554433333221
Q ss_pred cccccceEE---EEEecCCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCC-CcEEEEEecCCc
Q 010051 294 FFKLPYRLI---FAIATLNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQD-GYCTLVEFENDE 363 (519)
Q Consensus 294 ~~~~~~~~~---~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vwd~~~~~ 363 (519)
. .. ++++ +.+..+|++.-||..+......+.+ -.-.+.++.|||+.+++.+-.- ..|+-+-+...+
T Consensus 183 ~-~~-rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~--L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k 252 (376)
T KOG1520|consen 183 Y-DR-RDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG--LYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPK 252 (376)
T ss_pred c-ch-hheEEeeecCCCccceEEecCcccchhhhhhc--ccccccccCCCCCCEEEEEeeccceeeeeEecCCc
Confidence 1 00 1223 3333568999999876654333332 3446789999999998876432 344444455443
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.70 E-value=97 Score=32.54 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=87.1
Q ss_pred CCCCeEEEEEc---C--C--CCEEEEEeCCCeEEEEEc------CC---------CceEEEecc---cccCeEEEEEcCC
Q 010051 102 HRKDVLDLQWS---T--D--GAFLLSGSVDNSCIIWDV------NK---------GSVLQILDA---HFHYVQGVAWDPL 156 (519)
Q Consensus 102 ~~~~v~~~~~s---~--~--~~~l~~~~~dg~i~vwd~------~~---------~~~~~~~~~---h~~~v~~~~~~~~ 156 (519)
...+|..|+|. . + .++|+ .-....+.|+.. .. ...+..+.. ...+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 2 1 13444 444566777761 11 122333321 2246678999984
Q ss_pred -CCeEEEeeCCCeEEEEecCCCCccccccccceeeEEEeccCcccccCCccccceeeecCCCcceeeEEEEccCCCeEEE
Q 010051 157 -SKYVASLSSDRTCRIYANRPTKSKGVEKMNYVCQHVITKAGQHSTDDSKSAKNHLFHDETLPSFFRRLAWSPDGSFLLV 235 (519)
Q Consensus 157 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 235 (519)
...||.....|...||++..........+...+. . ...+............+.|.++-..|++
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~----~------------~gsi~~d~~e~s~w~rI~W~~~~~~lLv 220 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN----I------------SGSIIFDPEELSNWKRILWVSDSNRLLV 220 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccC----C------------CccccCCCcccCcceeeEecCCCCEEEE
Confidence 5689999999999999993222111111100000 0 0011011111144568999999888888
Q ss_pred ecCCcceeeeecccceEEEEeccCCCccc-ccCCCCCCCeEEEEEcCCc
Q 010051 236 PAGSYKISSMSESINSAYIFSRKDLSRPA-LQLPGASKPVVAVRFCPLA 283 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~ 283 (519)
+... .+.++|+....... .........|..+.-+|..
T Consensus 221 ~~r~-----------~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~ 258 (765)
T PF10214_consen 221 CNRS-----------KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDN 258 (765)
T ss_pred EcCC-----------ceEEEECCCCCccchhccCCChhheeeEEecCCc
Confidence 7764 88899987654322 3333445678888888873
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.31 E-value=53 Score=29.24 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=39.4
Q ss_pred CeEEEEEcCCCceEEEecccccCeEEEEEcCCCCeEEEee------CCCeEEEEecCCCC
Q 010051 125 NSCIIWDVNKGSVLQILDAHFHYVQGVAWDPLSKYVASLS------SDRTCRIYANRPTK 178 (519)
Q Consensus 125 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~ 178 (519)
..|++||..+.+...--.+-.+.|+.+.|..+.+.++.|. ....+..||+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4699999988776655555678899999986666666554 34568888887754
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=77.24 E-value=63 Score=30.12 Aligned_cols=150 Identities=11% Similarity=0.191 Sum_probs=82.0
Q ss_pred cCCCEEEEEcCCCcEEEEEecCCcccccccccccc-----ccccccCcceeEEEEc--cCC--CeEEEEEcccCCCcccc
Q 010051 23 PISGLLATGGADYDIKIWLINSGEKQKKIPTASYQ-----NSLSYHGSAINILRFS--PCG--GELIIWKLHTTETGQAW 93 (519)
Q Consensus 23 p~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~--~~~--~~i~vw~~~~~~~~~~~ 93 (519)
|...+++.....+-+.+||+... .+..++....- ..+.- .+....++.. .++ ..|++|.+..... .+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~Gr~NNVDvrygf~l-~g~~vDlavas~R~~g~n~l~~f~id~~~g--~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPVGRPNNVDVRYGFPL-NGKTVDLAVASDRSDGRNSLRLFRIDPDTG--EL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-SS-EEEEEEEEEEEE-TTEEEEEEEEEE-CCCT-EEEEEEEETTTT--EE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecCCCcceeeeecceec-CCceEEEEEEecCcCCCCeEEEEEecCCCC--cc
Confidence 44568887788888999999744 44444321110 11111 1222233322 232 5799998864211 11
Q ss_pred eeeec----cccCCCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEEcC---CC----ceEEEecccccCeEEEEEcCCCC
Q 010051 94 KVLKN----LSFHRKDVLDLQW--ST-DGA-FLLSGSVDNSCIIWDVN---KG----SVLQILDAHFHYVQGVAWDPLSK 158 (519)
Q Consensus 94 ~~~~~----~~~~~~~v~~~~~--s~-~~~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~h~~~v~~~~~~~~~~ 158 (519)
..+.. +......+..+|+ ++ +|. +++....+|.+..|.+. .+ +.++.|..- +.+..|.......
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccC
Confidence 11111 1112234667776 33 455 55667788988888775 23 346666543 5788899988888
Q ss_pred eEEEeeCCCeEEEEecCCC
Q 010051 159 YVASLSSDRTCRIYANRPT 177 (519)
Q Consensus 159 ~l~~~~~dg~i~iwd~~~~ 177 (519)
+|+.+-++.-|.-|+.+..
T Consensus 221 ~LYvgEE~~GIW~y~Aep~ 239 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPE 239 (381)
T ss_dssp EEEEEETTTEEEEEESSCC
T ss_pred CEEEecCccEEEEEecCCC
Confidence 9999999987888877644
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.98 E-value=1.2e+02 Score=32.22 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=53.4
Q ss_pred ccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccccceEEEEEecCCeEEEEeCCCCCceEEEec
Q 010051 248 SINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKLPYRLIFAIATLNSLYIYDTESVPPIAILAG 327 (519)
Q Consensus 248 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~ 327 (519)
..+.++.|+.-..+..+..+....-+-.-.+.+|-. .++ .++-...+++||+...++++....
T Consensus 910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~----------------~~~-LagvG~~l~~YdlG~K~lLRk~e~ 972 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQ----------------GRV-LAGVGRFLRLYDLGKKKLLRKCEL 972 (1205)
T ss_pred CCCceEEEEEEecCceeeeeeccCCCccceEEeccC----------------CEE-EEecccEEEEeeCChHHHHhhhhh
Confidence 445677777655444333332222222234455543 222 333345899999988777665544
Q ss_pred cc-cccEEEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 010051 328 LH-YAAITDIAWSNNARYLALSSQDGYCTLVEFEN 361 (519)
Q Consensus 328 ~~-~~~i~~~~~s~~g~~l~~~~~dg~i~vwd~~~ 361 (519)
.+ ...|+.+.+ .+..+++|..--.+.++....
T Consensus 973 k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 973 KFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred ccCceEEEEEee--cceEEEEeeccceEEEEEEec
Confidence 23 456777777 455777777666666555543
No 497
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=74.93 E-value=9.6 Score=19.69 Aligned_cols=25 Identities=0% Similarity=0.137 Sum_probs=17.5
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEE
Q 010051 16 VLTLDFHPISGLLATGGADYDIKIW 40 (519)
Q Consensus 16 V~~~~~sp~~~~la~~~~dg~i~iw 40 (519)
...++++++|+++++=+..+.|.++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4577888888777776666666654
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=74.46 E-value=1.4e+02 Score=32.73 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=19.4
Q ss_pred CcceeeEEEEccCCCeEEEecCCcce
Q 010051 217 LPSFFRRLAWSPDGSFLLVPAGSYKI 242 (519)
Q Consensus 217 ~~~~i~~~~~sp~g~~l~~~~~~~~~ 242 (519)
+-..+.+++.+|||..+++-.++.++
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 34567799999999988886665444
No 499
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.13 E-value=91 Score=30.48 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=54.2
Q ss_pred EEEEccCCCeEEEEEcccCCCcccc-----eeeeccc-----cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCce
Q 010051 69 ILRFSPCGGELIIWKLHTTETGQAW-----KVLKNLS-----FHRKDVLDLQWST-DGAFLLSGSVDNSCIIWDVNKGSV 137 (519)
Q Consensus 69 ~~~~~~~~~~i~vw~~~~~~~~~~~-----~~~~~~~-----~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~ 137 (519)
.+.+.++|..|..|++..--..... ....... ..=..++++.+.+ ++.+|+++-.-..|...|..+++.
T Consensus 226 Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 226 IVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 3445577888889988653211100 0000000 0113488999999 555555555566899999889988
Q ss_pred EEEecccccC-------eEE---------------EEEcCCCCeEEEeeCCC---eEEEEecCCCCc
Q 010051 138 LQILDAHFHY-------VQG---------------VAWDPLSKYVASLSSDR---TCRIYANRPTKS 179 (519)
Q Consensus 138 ~~~~~~h~~~-------v~~---------------~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~ 179 (519)
...+..+... +.. ..| .-+++-+.--.+| .|.+||-...+.
T Consensus 306 ~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~-~~gQH~~~~~~~g~~~~l~vFDNg~~r~ 371 (477)
T PF05935_consen 306 KWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW-FWGQHTAHLIPDGPQGNLLVFDNGNGRG 371 (477)
T ss_dssp EEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS-----SS-EEEEE-TTS---SEEEEE--TTGG
T ss_pred EEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc-cccccceEEcCCCCeEEEEEEECCCCCC
Confidence 7777554321 100 111 1245556666677 899998776553
No 500
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=74.10 E-value=68 Score=32.68 Aligned_cols=161 Identities=20% Similarity=0.148 Sum_probs=82.4
Q ss_pred cceeeEEEEccCCCeEEEecCCcceeeeecccceEEEEeccCCCcccccCCCCCCCeEEEEEcCCcccccccCCCCcccc
Q 010051 218 PSFFRRLAWSPDGSFLLVPAGSYKISSMSESINSAYIFSRKDLSRPALQLPGASKPVVAVRFCPLAFNLRESNSAGFFKL 297 (519)
Q Consensus 218 ~~~i~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~~~~ 297 (519)
...+..+.|+|+|..++....... ....+++.+.. . ....+...+....|+|++..++..........
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~------~~~~l~l~~~~-g-----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~ 126 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGG------RVAQLYLVDVG-G-----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR 126 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCC------CcceEEEEecC-C-----ceeeeecccccceeCCCCCeEEEEeccccccc
Confidence 455668899999999999873321 12455566554 1 23345567788899999988766322221111
Q ss_pred cce---------EEEEEec--CCeEEEEeCCCCCceEEEeccccccEEEEEEcCCCCEEEEEeCCCc----EEEEEecCC
Q 010051 298 PYR---------LIFAIAT--LNSLYIYDTESVPPIAILAGLHYAAITDIAWSNNARYLALSSQDGY----CTLVEFEND 362 (519)
Q Consensus 298 ~~~---------~~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----i~vwd~~~~ 362 (519)
... ..+.+.. ...+.+.|..+ ....... ....+....+++++..++....+.. +.-+.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (620)
T COG1506 127 DGGDHLFVDRLPVWFDGRGGERSDLYVVDIES--KLIKLGL-GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE 203 (620)
T ss_pred CCceeeeecccceeecCCCCcccceEEEccCc--ccccccC-CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec
Confidence 111 1111111 23344444433 2222222 4566777788877777776654442 222222211
Q ss_pred cccceeeecCCcccccCCCCcccccCCccEEEeec
Q 010051 363 ELGIPISLSGNKVSKDENKSPLVTKSEDMIIEAST 397 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 397 (519)
.......... ....+..+.+.++|+.++..+
T Consensus 204 ~~~~~~~~~~----~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 204 GNGELESLTP----GEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred CCCceEEEcC----CCceeeeeeeCCCCCeeEEec
Confidence 1112222111 123477788888887554443
Done!