Query 010053
Match_columns 519
No_of_seqs 282 out of 1310
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 20:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 6.9E-54 1.5E-58 402.2 12.1 163 24-210 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.2 9E-12 2E-16 97.3 5.3 52 340-391 5-59 (60)
3 smart00353 HLH helix loop heli 99.2 1.6E-11 3.4E-16 93.9 6.0 49 344-392 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.2 1.5E-11 3.3E-16 95.1 4.6 48 341-388 3-55 (55)
5 KOG1318 Helix loop helix trans 98.6 3.3E-08 7.1E-13 104.5 6.0 54 339-392 233-290 (411)
6 KOG1319 bHLHZip transcription 98.3 9E-07 1.9E-11 83.8 6.7 63 341-403 64-133 (229)
7 cd04897 ACT_ACR_3 ACT domain-c 98.2 8E-06 1.7E-10 67.6 9.5 66 453-518 3-73 (75)
8 KOG2483 Upstream transcription 98.2 4.1E-06 8.9E-11 83.1 8.6 68 335-402 55-125 (232)
9 cd04895 ACT_ACR_1 ACT domain-c 98.2 1.5E-05 3.2E-10 65.6 9.7 65 453-517 3-68 (72)
10 cd04896 ACT_ACR-like_3 ACT dom 98.2 1.3E-05 2.8E-10 66.4 8.9 67 453-519 2-74 (75)
11 cd04927 ACT_ACR-like_2 Second 98.1 2.7E-05 5.8E-10 64.3 9.5 67 452-518 1-72 (76)
12 KOG3561 Aryl-hydrocarbon recep 97.9 1.3E-05 2.8E-10 91.4 5.0 51 340-390 21-75 (803)
13 cd04900 ACT_UUR-like_1 ACT dom 97.8 0.0002 4.4E-09 58.2 10.3 65 453-517 3-69 (73)
14 KOG4304 Transcriptional repres 97.8 1.4E-05 3.1E-10 80.4 3.5 53 340-392 33-93 (250)
15 cd04899 ACT_ACR-UUR-like_2 C-t 97.6 0.00081 1.8E-08 53.4 9.7 65 453-518 2-67 (70)
16 cd04925 ACT_ACR_2 ACT domain-c 97.5 0.0008 1.7E-08 55.1 9.5 66 453-518 2-73 (74)
17 cd04928 ACT_TyrKc Uncharacteri 97.5 0.00099 2.2E-08 54.2 9.5 65 453-518 3-68 (68)
18 KOG2588 Predicted DNA-binding 97.5 7.2E-05 1.6E-09 85.7 3.3 67 336-402 273-340 (953)
19 KOG3960 Myogenic helix-loop-he 97.4 0.00028 6E-09 70.1 6.7 66 337-402 116-183 (284)
20 KOG0561 bHLH transcription fac 97.4 0.00011 2.4E-09 74.5 3.2 52 345-396 66-119 (373)
21 cd04926 ACT_ACR_4 C-terminal 97.0 0.0064 1.4E-07 49.4 9.7 64 453-517 3-67 (72)
22 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.0081 1.8E-07 47.2 9.7 65 453-518 2-67 (70)
23 PLN03217 transcription factor 96.9 0.0028 6.1E-08 53.2 6.5 52 351-402 19-76 (93)
24 KOG4029 Transcription factor H 96.8 0.0011 2.4E-08 65.9 3.9 59 338-396 108-170 (228)
25 PRK05007 PII uridylyl-transfer 96.6 0.0097 2.1E-07 70.1 10.8 70 449-518 806-879 (884)
26 PF13740 ACT_6: ACT domain; PD 96.6 0.0097 2.1E-07 48.9 7.6 64 451-516 2-65 (76)
27 cd04893 ACT_GcvR_1 ACT domains 96.2 0.048 1E-06 44.9 9.4 62 452-515 2-63 (77)
28 cd04872 ACT_1ZPV ACT domain pr 96.1 0.027 5.8E-07 47.3 7.5 64 452-515 2-65 (88)
29 PRK00194 hypothetical protein; 96.0 0.033 7.1E-07 46.8 7.9 65 451-515 3-67 (90)
30 PRK04374 PII uridylyl-transfer 96.0 0.058 1.2E-06 63.6 12.2 78 441-518 784-867 (869)
31 PRK01759 glnD PII uridylyl-tra 95.9 0.031 6.7E-07 65.7 9.9 69 449-517 781-853 (854)
32 PRK00275 glnD PII uridylyl-tra 95.9 0.047 1E-06 64.5 11.4 78 441-518 802-886 (895)
33 cd04875 ACT_F4HF-DF N-terminal 95.9 0.071 1.5E-06 43.1 9.0 63 453-515 1-65 (74)
34 cd04870 ACT_PSP_1 CT domains f 95.8 0.072 1.6E-06 43.4 8.7 63 453-516 1-63 (75)
35 PRK03381 PII uridylyl-transfer 95.7 0.063 1.4E-06 62.5 11.0 65 451-517 707-772 (774)
36 PRK05092 PII uridylyl-transfer 95.7 0.09 1.9E-06 62.5 12.3 78 441-518 831-915 (931)
37 cd04869 ACT_GcvR_2 ACT domains 95.6 0.11 2.3E-06 42.4 9.3 61 454-515 2-68 (81)
38 PF01842 ACT: ACT domain; Int 95.6 0.033 7.2E-07 43.1 5.9 37 453-489 2-38 (66)
39 PRK03059 PII uridylyl-transfer 95.1 0.12 2.7E-06 60.8 10.9 68 450-518 785-855 (856)
40 PRK03381 PII uridylyl-transfer 94.9 0.21 4.6E-06 58.2 12.0 70 449-518 597-667 (774)
41 TIGR01693 UTase_glnD [Protein- 94.8 0.13 2.9E-06 60.4 10.0 68 450-517 778-849 (850)
42 PRK05007 PII uridylyl-transfer 94.6 0.23 4.9E-06 58.8 11.5 78 441-518 689-773 (884)
43 PRK01759 glnD PII uridylyl-tra 94.6 0.23 5E-06 58.6 11.4 78 441-518 665-749 (854)
44 PF13291 ACT_4: ACT domain; PD 94.5 0.24 5.2E-06 40.5 8.2 51 451-501 6-58 (80)
45 TIGR01693 UTase_glnD [Protein- 94.5 0.18 3.9E-06 59.4 10.2 69 449-517 666-740 (850)
46 COG2844 GlnD UTP:GlnB (protein 94.0 0.19 4.1E-06 58.0 8.6 77 440-517 778-857 (867)
47 cd04894 ACT_ACR-like_1 ACT dom 93.9 0.35 7.5E-06 38.9 7.4 64 453-516 2-67 (69)
48 cd04886 ACT_ThrD-II-like C-ter 93.8 0.32 6.8E-06 37.8 7.3 47 454-500 1-52 (73)
49 cd04887 ACT_MalLac-Enz ACT_Mal 93.5 0.52 1.1E-05 37.6 8.3 48 454-501 2-50 (74)
50 PRK00275 glnD PII uridylyl-tra 93.3 0.41 8.8E-06 56.8 10.2 69 450-518 703-778 (895)
51 PRK03059 PII uridylyl-transfer 93.2 0.45 9.7E-06 56.2 10.4 70 449-518 676-750 (856)
52 cd04888 ACT_PheB-BS C-terminal 92.7 0.54 1.2E-05 37.6 7.2 62 453-514 2-64 (76)
53 PRK05092 PII uridylyl-transfer 92.4 0.92 2E-05 54.1 11.5 77 441-517 720-804 (931)
54 KOG4447 Transcription factor T 92.4 0.086 1.9E-06 49.1 2.3 51 339-389 78-130 (173)
55 cd02116 ACT ACT domains are co 92.2 0.76 1.6E-05 32.4 6.9 35 454-488 1-35 (60)
56 KOG3560 Aryl-hydrocarbon recep 92.0 0.14 3E-06 56.2 3.8 38 348-385 34-75 (712)
57 PRK04435 hypothetical protein; 92.0 0.78 1.7E-05 42.7 8.3 68 447-514 65-133 (147)
58 PRK04374 PII uridylyl-transfer 91.5 0.94 2E-05 53.6 10.1 70 449-518 688-760 (869)
59 KOG3910 Helix loop helix trans 91.4 0.091 2E-06 57.0 1.5 57 339-395 526-586 (632)
60 TIGR00655 PurU formyltetrahydr 90.4 1.8 3.9E-05 44.6 9.8 63 453-515 2-66 (280)
61 cd04876 ACT_RelA-SpoT ACT dom 90.3 1.3 2.8E-05 33.0 6.7 47 454-500 1-48 (71)
62 cd04905 ACT_CM-PDT C-terminal 90.2 2.3 5E-05 34.8 8.6 61 453-514 3-64 (80)
63 PRK08577 hypothetical protein; 89.7 2.8 6.2E-05 38.2 9.6 65 450-514 55-121 (136)
64 PRK06027 purU formyltetrahydro 89.4 2.4 5.2E-05 43.8 9.9 66 450-515 5-72 (286)
65 cd04874 ACT_Af1403 N-terminal 89.0 2.8 6.1E-05 32.4 7.9 59 453-514 2-61 (72)
66 KOG3558 Hypoxia-inducible fact 89.0 0.29 6.3E-06 55.3 2.9 42 345-386 52-97 (768)
67 cd04879 ACT_3PGDH-like ACT_3PG 88.9 2.3 5E-05 32.5 7.4 57 454-514 2-60 (71)
68 cd04878 ACT_AHAS N-terminal AC 88.9 2.7 5.9E-05 32.3 7.8 47 453-499 2-50 (72)
69 cd04880 ACT_AAAH-PDT-like ACT 88.8 2.5 5.4E-05 34.0 7.7 47 455-501 3-50 (75)
70 cd04881 ACT_HSDH-Hom ACT_HSDH_ 88.8 3.2 6.9E-05 32.5 8.2 57 453-513 2-60 (79)
71 cd04877 ACT_TyrR N-terminal AC 88.8 2.6 5.6E-05 34.0 7.7 37 453-490 2-38 (74)
72 cd04909 ACT_PDH-BS C-terminal 88.4 2.3 5E-05 33.4 7.1 60 453-515 3-64 (69)
73 KOG3559 Transcriptional regula 88.2 0.44 9.5E-06 50.9 3.5 42 345-386 7-52 (598)
74 cd04883 ACT_AcuB C-terminal AC 88.0 3.6 7.8E-05 32.4 8.0 59 453-515 3-63 (72)
75 cd04882 ACT_Bt0572_2 C-termina 87.9 2.2 4.9E-05 32.7 6.6 57 453-515 1-59 (65)
76 cd04908 ACT_Bt0572_1 N-termina 87.8 3.6 7.7E-05 32.4 7.8 57 453-515 3-59 (66)
77 cd04903 ACT_LSD C-terminal ACT 87.5 3.3 7.1E-05 31.8 7.4 58 453-514 1-60 (71)
78 PRK13010 purU formyltetrahydro 87.4 2.6 5.7E-05 43.6 8.6 66 451-516 9-77 (289)
79 PRK13011 formyltetrahydrofolat 87.1 3.4 7.4E-05 42.7 9.3 65 451-516 7-73 (286)
80 cd04884 ACT_CBS C-terminal ACT 86.1 4.1 8.9E-05 32.5 7.4 61 454-515 2-65 (72)
81 cd04904 ACT_AAAH ACT domain of 83.8 5.6 0.00012 32.3 7.3 57 455-514 4-61 (74)
82 PF13185 GAF_2: GAF domain; PD 83.3 0.96 2.1E-05 39.7 2.8 64 140-207 69-137 (148)
83 cd04889 ACT_PDH-BS-like C-term 82.6 5 0.00011 30.2 6.2 45 454-498 1-46 (56)
84 cd04931 ACT_PAH ACT domain of 82.5 8.6 0.00019 32.9 8.1 61 452-514 15-76 (90)
85 PRK07334 threonine dehydratase 81.7 6.4 0.00014 42.4 8.8 53 449-501 324-381 (403)
86 COG2844 GlnD UTP:GlnB (protein 81.6 5.8 0.00012 46.3 8.7 71 444-514 677-748 (867)
87 TIGR01817 nifA Nif-specific re 78.1 2.3 5.1E-05 47.3 4.2 77 132-211 68-153 (534)
88 COG3830 ACT domain-containing 75.2 5.8 0.00013 34.1 4.8 66 451-516 3-68 (90)
89 PRK11061 fused phosphoenolpyru 75.2 3.8 8.2E-05 47.9 5.0 70 132-204 67-141 (748)
90 KOG3898 Transcription factor N 73.8 1.9 4.1E-05 43.8 1.8 50 340-389 73-125 (254)
91 smart00065 GAF Domain present 72.6 24 0.00051 29.1 8.1 75 133-210 52-135 (149)
92 cd04902 ACT_3PGDH-xct C-termin 70.8 15 0.00034 28.6 6.2 57 454-514 2-60 (73)
93 PRK11589 gcvR glycine cleavage 70.2 12 0.00027 36.4 6.5 65 449-515 6-70 (190)
94 PF13710 ACT_5: ACT domain; PD 70.0 11 0.00023 30.0 5.0 55 460-516 1-57 (63)
95 TIGR00119 acolac_sm acetolacta 68.7 18 0.00039 34.2 7.1 61 453-515 3-65 (157)
96 cd04901 ACT_3PGDH C-terminal A 68.7 6.1 0.00013 30.7 3.4 46 454-499 2-47 (69)
97 cd04929 ACT_TPH ACT domain of 68.2 25 0.00054 28.9 7.0 56 456-514 5-61 (74)
98 COG0788 PurU Formyltetrahydrof 66.2 30 0.00065 35.6 8.4 66 450-515 6-73 (287)
99 PF05088 Bac_GDH: Bacterial NA 65.3 33 0.00072 43.3 10.2 69 450-518 488-562 (1528)
100 cd04906 ACT_ThrD-I_1 First of 65.3 39 0.00084 28.1 7.8 63 451-515 1-64 (85)
101 KOG4395 Transcription factor A 65.2 10 0.00023 38.4 4.9 52 341-392 176-230 (285)
102 PRK11589 gcvR glycine cleavage 64.9 37 0.0008 33.1 8.6 63 452-515 96-164 (190)
103 PRK11895 ilvH acetolactate syn 64.3 23 0.00049 33.7 6.8 61 453-515 4-66 (161)
104 cd04885 ACT_ThrD-I Tandem C-te 63.7 37 0.0008 26.8 7.0 60 454-515 1-61 (68)
105 PRK11152 ilvM acetolactate syn 61.6 50 0.0011 27.5 7.6 60 453-515 5-66 (76)
106 CHL00100 ilvH acetohydroxyacid 59.7 29 0.00063 33.4 6.7 63 453-517 4-68 (174)
107 PRK06737 acetolactate synthase 58.2 37 0.00081 28.3 6.2 61 453-515 4-66 (76)
108 PRK00227 glnD PII uridylyl-tra 54.6 67 0.0015 37.4 9.7 63 454-517 550-613 (693)
109 PRK10872 relA (p)ppGpp synthet 54.4 43 0.00093 39.3 8.1 60 442-501 652-718 (743)
110 TIGR00691 spoT_relA (p)ppGpp s 53.7 40 0.00087 39.1 7.8 60 442-501 596-661 (683)
111 cd04922 ACT_AKi-HSDH-ThrA_2 AC 53.5 72 0.0016 24.2 7.0 59 453-517 3-64 (66)
112 cd04892 ACT_AK-like_2 ACT doma 52.4 69 0.0015 23.5 6.6 34 453-486 2-38 (65)
113 PRK08198 threonine dehydratase 52.0 60 0.0013 34.8 8.4 67 448-515 324-395 (404)
114 PF01590 GAF: GAF domain; Int 51.5 19 0.0004 31.6 3.7 62 132-195 51-131 (154)
115 PRK11092 bifunctional (p)ppGpp 50.7 48 0.001 38.7 7.8 60 442-501 612-677 (702)
116 PRK13562 acetolactate synthase 50.6 44 0.00096 28.5 5.6 62 453-515 4-67 (84)
117 COG4492 PheB ACT domain-contai 50.3 80 0.0017 29.3 7.5 66 449-514 70-136 (150)
118 TIGR01127 ilvA_1Cterm threonin 48.8 79 0.0017 33.6 8.6 67 448-515 302-373 (380)
119 PF02120 Flg_hook: Flagellar h 48.7 66 0.0014 26.2 6.4 48 440-487 26-79 (85)
120 cd04937 ACT_AKi-DapG-BS_2 ACT 47.9 91 0.002 24.1 6.8 30 453-482 3-35 (64)
121 cd04912 ACT_AKiii-LysC-EC-like 46.8 88 0.0019 25.2 6.7 32 453-484 3-37 (75)
122 PRK06382 threonine dehydratase 45.5 80 0.0017 34.1 8.1 67 448-515 327-398 (406)
123 cd04919 ACT_AK-Hom3_2 ACT doma 45.2 1.2E+02 0.0026 23.1 7.1 34 453-486 3-39 (66)
124 PF02344 Myc-LZ: Myc leucine z 43.7 24 0.00052 24.6 2.4 18 346-363 12-29 (32)
125 cd04916 ACT_AKiii-YclM-BS_2 AC 43.3 1.4E+02 0.003 22.6 7.1 59 453-517 3-64 (66)
126 cd04932 ACT_AKiii-LysC-EC_1 AC 43.1 1.8E+02 0.0039 23.7 8.1 32 453-484 3-37 (75)
127 PRK00227 glnD PII uridylyl-tra 42.0 37 0.0008 39.5 5.1 60 452-518 632-691 (693)
128 cd04930 ACT_TH ACT domain of t 41.3 95 0.0021 27.7 6.6 60 452-514 42-102 (115)
129 PRK11899 prephenate dehydratas 39.8 1.6E+02 0.0034 30.5 8.8 64 451-515 194-258 (279)
130 smart00338 BRLZ basic region l 39.1 1.3E+02 0.0029 23.6 6.5 24 380-403 24-47 (65)
131 cd04868 ACT_AK-like ACT domain 38.3 1.1E+02 0.0025 21.8 5.7 26 461-486 13-38 (60)
132 KOG3582 Mlx interactors and re 37.9 9.4 0.0002 43.7 -0.5 65 338-402 650-719 (856)
133 cd04890 ACT_AK-like_1 ACT doma 35.8 1.3E+02 0.0028 22.8 5.8 25 460-484 12-36 (62)
134 PF13840 ACT_7: ACT domain ; P 34.6 55 0.0012 25.8 3.6 34 450-483 5-42 (65)
135 PRK08178 acetolactate synthase 33.1 2.1E+02 0.0046 25.0 7.2 63 450-515 7-71 (96)
136 PRK15429 formate hydrogenlyase 32.6 51 0.0011 38.1 4.3 75 135-210 254-337 (686)
137 KOG4447 Transcription factor T 32.3 26 0.00056 33.1 1.5 23 346-368 29-51 (173)
138 PRK08526 threonine dehydratase 32.0 1.9E+02 0.0041 31.3 8.3 65 449-514 324-393 (403)
139 PF07009 DUF1312: Protein of u 31.3 76 0.0016 28.0 4.3 45 135-182 55-99 (113)
140 PRK05022 anaerobic nitric oxid 30.2 46 0.001 37.0 3.4 79 132-211 65-153 (509)
141 cd04921 ACT_AKi-HSDH-ThrA-like 26.8 1.8E+02 0.0038 23.1 5.5 33 453-485 3-38 (80)
142 PRK11898 prephenate dehydratas 26.8 2.5E+02 0.0055 28.9 7.8 63 452-515 197-261 (283)
143 cd04920 ACT_AKiii-DAPDC_2 ACT 26.6 2.2E+02 0.0047 22.1 5.8 26 460-485 12-37 (63)
144 cd04917 ACT_AKiii-LysC-EC_2 AC 26.1 3E+02 0.0065 21.0 6.7 30 453-482 3-35 (64)
145 cd04923 ACT_AK-LysC-DapG-like_ 25.9 2.7E+02 0.0059 20.5 6.4 33 453-485 2-37 (63)
146 PF03698 UPF0180: Uncharacteri 25.9 1.4E+02 0.003 25.2 4.7 56 463-518 8-80 (80)
147 PF06005 DUF904: Protein of un 25.7 1.3E+02 0.0029 24.8 4.5 26 377-402 13-38 (72)
148 cd04924 ACT_AK-Arch_2 ACT doma 25.3 2.9E+02 0.0064 20.6 6.9 59 453-517 3-64 (66)
149 COG0077 PheA Prephenate dehydr 25.3 3.8E+02 0.0083 27.8 8.7 64 451-515 194-258 (279)
150 COG0317 SpoT Guanosine polypho 23.9 2.2E+02 0.0047 33.4 7.3 61 441-501 612-678 (701)
151 PRK06032 fliH flagellar assemb 23.5 51 0.0011 32.1 1.9 51 14-68 132-185 (199)
152 PF14992 TMCO5: TMCO5 family 23.3 1.1E+02 0.0024 31.7 4.3 27 376-402 145-171 (280)
153 COG4747 ACT domain-containing 23.3 2.4E+02 0.0051 25.9 5.9 39 453-491 5-43 (142)
154 cd04934 ACT_AK-Hom3_1 CT domai 23.1 4.1E+02 0.0088 21.5 7.3 25 460-484 13-37 (73)
155 PF00403 HMA: Heavy-metal-asso 23.1 2.3E+02 0.0051 21.4 5.3 49 462-516 10-59 (62)
156 TIGR01268 Phe4hydrox_tetr phen 22.6 3.5E+02 0.0075 29.9 8.2 61 452-514 17-78 (436)
157 PF07293 DUF1450: Protein of u 21.8 2.3E+02 0.0051 23.7 5.3 67 453-519 4-74 (78)
158 COG3074 Uncharacterized protei 21.6 1.6E+02 0.0034 24.4 4.0 26 377-402 13-38 (79)
159 PF02185 HR1: Hr1 repeat; Int 21.3 4.3E+02 0.0093 21.1 7.3 52 343-402 9-60 (70)
160 cd04907 ACT_ThrD-I_2 Second of 21.3 4.8E+02 0.01 21.6 7.5 60 451-515 1-63 (81)
161 PF00170 bZIP_1: bZIP transcri 20.4 1.4E+02 0.0031 23.4 3.6 22 381-402 25-46 (64)
162 PRK15385 magnesium transport p 20.4 4.9E+02 0.011 26.2 8.1 63 451-514 142-210 (225)
163 PF13492 GAF_3: GAF domain; PD 20.3 1E+02 0.0022 25.9 3.0 64 132-207 49-117 (129)
164 smart00842 FtsA Cell division 20.2 2.8E+02 0.0061 26.2 6.3 52 467-518 51-109 (187)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=6.9e-54 Score=402.23 Aligned_cols=163 Identities=45% Similarity=0.784 Sum_probs=148.6
Q ss_pred HHHHHHHHhccCCCCceEEEEeecCCCCCCCeeEEecccccCCCcchhhhhhccccCCCCCCcchhhhhhhhhHHhhhhh
Q 010053 24 LQQRLQFIVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVH 103 (519)
Q Consensus 24 Lq~~L~~lv~~~~~~WsYAIFWq~s~~~~g~~vL~WgDGy~~g~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~lreL~sl 103 (519)
|||+||.||++. +|+||||||++++++ +|+||||||+|+++. ++. . .+.+.+|+++||+||++
T Consensus 1 Lq~~Lr~lv~~~--~W~YaVFWk~~~~~~---~L~W~DG~~~g~~~~--~~~-------~---~~~~~~~~~~l~~l~~~ 63 (163)
T PF14215_consen 1 LQQRLRSLVENS--QWTYAVFWKLSPDNS---VLVWGDGYCNGPKET--RKN-------G---EEEQEQRSKVLRELHSS 63 (163)
T ss_pred ChHHHHHHhCCC--CCcEEEEeEEcCCCC---eeeEcceeecCCccc--ccc-------h---hhccchhhhHHHHHhhh
Confidence 799999999965 999999999999963 999999999999743 221 1 13456799999999998
Q ss_pred cCCCccccccCCCCCCcceEEEEEeeeeeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEec
Q 010053 104 FGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVST 183 (519)
Q Consensus 104 ~~g~~~~~~l~~~dvtd~Ewfyl~sm~~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~ 183 (519)
++ ..++.+++|+|+||||++||+|+| |+| +|||||++|+|+||++++.++.+.|+|+++||++|||||||||+
T Consensus 64 ~~----~~~~~~~~v~~~e~f~~~s~~~sf--g~G-~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv 136 (163)
T PF14215_consen 64 FS----SYALSPEEVTDTEWFYLVSMSYSF--GEG-IPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPV 136 (163)
T ss_pred cc----ccccccchhHHHHHHhhceeeEEe--cCC-ccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEe
Confidence 87 445678899999999999999999 999 99999999999999999999999999999999999999999999
Q ss_pred CCceEeeccccccccCHHHHHHHHHHc
Q 010053 184 ACGVVELGSSDLIKEDWSLVQLAKSLF 210 (519)
Q Consensus 184 ~~GVvELGSt~~i~E~~~~v~~vk~~f 210 (519)
++||||||||++|+||+++|++||++|
T Consensus 137 ~~GVvELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 137 PNGVVELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred cCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence 999999999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.24 E-value=9e-12 Score=97.28 Aligned_cols=52 Identities=44% Similarity=0.666 Sum_probs=49.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC---CCCchhhHHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPNV---SKMDKASLLADAVAYIKELRAKV 391 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~---~k~dKaSIL~~AI~YIk~Lq~~v 391 (519)
+..|+.+||+||++||..|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999987 89999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.23 E-value=1.6e-11 Score=93.94 Aligned_cols=49 Identities=39% Similarity=0.648 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHHHHHHHHHH
Q 010053 344 VEAERQRRERLNHRFYALRSVVPN---VSKMDKASLLADAVAYIKELRAKVD 392 (519)
Q Consensus 344 ~~~ER~RR~kln~~f~~LrslvP~---~~k~dKaSIL~~AI~YIk~Lq~~v~ 392 (519)
+.+||+||++||+.|..|+++||. ..|.+|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999876
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.20 E-value=1.5e-11 Score=95.13 Aligned_cols=48 Identities=46% Similarity=0.772 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCC-----CCCchhhHHHHHHHHHHHHH
Q 010053 341 LNHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVAYIKELR 388 (519)
Q Consensus 341 ~~h~~~ER~RR~kln~~f~~LrslvP~~-----~k~dKaSIL~~AI~YIk~Lq 388 (519)
..|+..||+||++||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999986 78999999999999999997
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.64 E-value=3.3e-08 Score=104.52 Aligned_cols=54 Identities=35% Similarity=0.603 Sum_probs=48.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC----CCCchhhHHHHHHHHHHHHHHHHH
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPNV----SKMDKASLLADAVAYIKELRAKVD 392 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~~----~k~dKaSIL~~AI~YIk~Lq~~v~ 392 (519)
.+.+|++.|||||++||+++..|..|||.+ .|..|.+||..+++||++||+..+
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999986 466799999999999999998766
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.34 E-value=9e-07 Score=83.82 Aligned_cols=63 Identities=25% Similarity=0.489 Sum_probs=56.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCCC-------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010053 341 LNHVEAERQRRERLNHRFYALRSVVPNVS-------KMDKASLLADAVAYIKELRAKVDELEAKLREQAR 403 (519)
Q Consensus 341 ~~h~~~ER~RR~kln~~f~~LrslvP~~~-------k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~ 403 (519)
..|.-+||+||+.||.-+..|+.|||.+. |..||.||..||+||..|+..+.+-+.+...|.+
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999643 6668999999999999999999888888877774
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=8e-06 Score=67.63 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=57.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CC-C---HHHHHHHHHHHhh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LI-S---EEVIRSAIFQRMQ 518 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~-s---~e~L~~aL~~~l~ 518 (519)
+|+|.|++|+|+|.+|..+|-+++++|.+|.|++.++.+..+|.++-.+| .+ + .+.|+.+|..+|+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999975444 33 3 3567777777775
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.22 E-value=4.1e-06 Score=83.14 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=57.2
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHhccCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 335 SGRESPLNHVEAERQRRERLNHRFYALRSVVPNV---SKMDKASLLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 335 ~~~~~~~~h~~~ER~RR~kln~~f~~LrslvP~~---~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
++...+..|+..||+||..|++.|..|+.+||.. +..+.++||..|..||+.|+.+..+....++.+.
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999973 2223689999999999999998777777666666
No 9
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.18 E-value=1.5e-05 Score=65.56 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=54.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s~e~L~~aL~~~l 517 (519)
+|+|.+++|+|+|.+|.++|.++||+|+.|.|++.++.+..+|.+.-.+| .++.++..+.|.++|
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999985544 454334445555544
No 10
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=1.3e-05 Score=66.38 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=57.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE--eeCCeEEEEEEEEcCCCCC-C---HHHHHHHHHHHhhC
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS--SVRETMLQDVVVRIPEGLI-S---EEVIRSAIFQRMQN 519 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS--~~~d~v~~ti~vkv~~~~~-s---~e~L~~aL~~~l~~ 519 (519)
+|+|.|++|+|+|.+|..+|..+||+|+.|.|+ +.++.+..+|.+...++.+ + .+.|+++|.++|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999 9999999999995544444 3 35677777777653
No 11
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=2.7e-05 Score=64.32 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=54.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe-eCCeEEEEEEEEcCCCCC-C---HHHHHHHHHHHhh
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS-VRETMLQDVVVRIPEGLI-S---EEVIRSAIFQRMQ 518 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~-~~d~v~~ti~vkv~~~~~-s---~e~L~~aL~~~l~ 518 (519)
++|+|.|++++|+|++|..+|..+||+|++|.+++ .++.++.+|.+.-.++.. + .+.|+++|.++|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999996 888999999997544442 2 3446666666554
No 12
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.87 E-value=1.3e-05 Score=91.41 Aligned_cols=51 Identities=29% Similarity=0.436 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC----CCCchhhHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPNV----SKMDKASLLADAVAYIKELRAK 390 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~----~k~dKaSIL~~AI~YIk~Lq~~ 390 (519)
+.+|+.+|||||+|||..+..|.+|||.+ -|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 45799999999999999999999999985 5999999999999999999884
No 13
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=0.0002 Score=58.25 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=51.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-CCeEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-RETMLQDVVVRIPEG-LISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-~d~v~~ti~vkv~~~-~~s~e~L~~aL~~~l 517 (519)
.|.|.|++++|+|.+|..+|..+||+|+.|.+.+. ++.++.+|.+.-.++ ....++..+.|.++|
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L 69 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHH
Confidence 57899999999999999999999999999999887 589999999975444 233334444455544
No 14
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.80 E-value=1.4e-05 Score=80.41 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=46.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCC--------CCCCchhhHHHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPN--------VSKMDKASLLADAVAYIKELRAKVD 392 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~--------~~k~dKaSIL~~AI~YIk~Lq~~v~ 392 (519)
+.+|-+.||+||.+||+-+..|+.|||. .+|++||-||.-|++|+++|+....
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3456699999999999999999999994 3788999999999999999997543
No 15
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.00081 Score=53.42 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=52.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCC-CCHHHHHHHHHHHhh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGL-ISEEVIRSAIFQRMQ 518 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~-~s~e~L~~aL~~~l~ 518 (519)
+|.|.|++++|+|.+|+.+|.++++.|.++.+.+.++.++..|.+.-.++. .+. +..+.|.++|.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~-~~~~~i~~~l~ 67 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDP-ERQEALRAALG 67 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHHH
Confidence 688999999999999999999999999999999988888999999865442 444 34445555553
No 16
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.0008 Score=55.09 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=54.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCC-C--CCC---HHHHHHHHHHHhh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPE-G--LIS---EEVIRSAIFQRMQ 518 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~-~--~~s---~e~L~~aL~~~l~ 518 (519)
+|+|.+++++|+|.+|..+|..+|+.|+.|.+++.++.++.+|.+.-.+ + ... .+.|+++|.++|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999987433 2 223 3466666666553
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00099 Score=54.20 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=55.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-CCeEEEEEEEEcCCCCCCHHHHHHHHHHHhh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-RETMLQDVVVRIPEGLISEEVIRSAIFQRMQ 518 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-~d~v~~ti~vkv~~~~~s~e~L~~aL~~~l~ 518 (519)
-|-|.|+.++|+|++|..+|..+||.|+.|++.+. ++.++.+|.|.-.++- .+++|+.+|.++|.
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-~~~~~~~~~~~~~~ 68 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-ETAALGHALQKEID 68 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-chHHHHHHHHHhhC
Confidence 46788999999999999999999999999999865 5699999999854443 57789999988863
No 18
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.46 E-value=7.2e-05 Score=85.68 Aligned_cols=67 Identities=25% Similarity=0.454 Sum_probs=60.7
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHhccCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 336 GRESPLNHVEAERQRRERLNHRFYALRSVVPN-VSKMDKASLLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 336 ~~~~~~~h~~~ER~RR~kln~~f~~LrslvP~-~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
|.+.+.+|+..||+-|--||+++..|+.+||. ..|..|.++|..||+||++|+...+.+..+...++
T Consensus 273 G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 273 GGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 35788999999999999999999999999997 78999999999999999999998888877766655
No 19
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.44 E-value=0.00028 Score=70.06 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=53.8
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhc-cCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 337 RESPLNHVEAERQRRERLNHRFYALRS-VVPN-VSKMDKASLLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 337 ~~~~~~h~~~ER~RR~kln~~f~~Lrs-lvP~-~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
.+.+..-.+.||+|=.|+|+-|.+|+. -.+| ....-|+-||..||+||..||.-++++.+....++
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~~ 183 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGLA 183 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 345556679999999999999999964 4555 45567999999999999999999998887666554
No 20
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.38 E-value=0.00011 Score=74.48 Aligned_cols=52 Identities=33% Similarity=0.563 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 010053 345 EAERQRRERLNHRFYALRSVVPN--VSKMDKASLLADAVAYIKELRAKVDELEA 396 (519)
Q Consensus 345 ~~ER~RR~kln~~f~~LrslvP~--~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~ 396 (519)
.-||+|=.-||.-|..||+|+|. .-|..||.||..+.+||.+|+...-+|-.
T Consensus 66 sNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~ 119 (373)
T KOG0561|consen 66 SNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLP 119 (373)
T ss_pred chHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 45999999999999999999997 78999999999999999999987665543
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0064 Score=49.41 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=51.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCC-CCHHHHHHHHHHHh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGL-ISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~-~s~e~L~~aL~~~l 517 (519)
.|.|.+++++|+|.+|..+|.++++.|++|.+.+.++.++.+|.+.-.++. .+. +..++|.++|
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l 67 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEI 67 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHh
Confidence 577899999999999999999999999999999888888888888744432 333 3445566655
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.00 E-value=0.0081 Score=47.16 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=51.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCC-CCHHHHHHHHHHHhh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGL-ISEEVIRSAIFQRMQ 518 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~-~s~e~L~~aL~~~l~ 518 (519)
.|.|.|+.++|++.+|+.+|.++++.+.++.+.+.++.....|.+.-+++. .++ +-.+.|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDP-ERIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHHH
Confidence 578999999999999999999999999999999887777778888765543 333 34445555553
No 23
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.91 E-value=0.0028 Score=53.20 Aligned_cols=52 Identities=31% Similarity=0.601 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccCCCC---CCCchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 351 RERLNHRFYALRSVVPNV---SKMDKAS---LLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 351 R~kln~~f~~LrslvP~~---~k~dKaS---IL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
-+.|++....|+.|+|.. -..+|+| +|.+|..||+.|+++|.+|.....+|-
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999973 2234554 899999999999999999999998876
No 24
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.80 E-value=0.0011 Score=65.87 Aligned_cols=59 Identities=31% Similarity=0.403 Sum_probs=50.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 010053 338 ESPLNHVEAERQRRERLNHRFYALRSVVPN----VSKMDKASLLADAVAYIKELRAKVDELEA 396 (519)
Q Consensus 338 ~~~~~h~~~ER~RR~kln~~f~~LrslvP~----~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~ 396 (519)
..+..++.+||+|=+.+|..|..||.+||. ..|..|..+|.-||.||+.|+.-++.-+.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 356678888999999999999999999996 46788999999999999999987765553
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.63 E-value=0.0097 Score=70.10 Aligned_cols=70 Identities=11% Similarity=0.248 Sum_probs=58.6
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCC---HHHHHHHHHHHhh
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LIS---EEVIRSAIFQRMQ 518 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s---~e~L~~aL~~~l~ 518 (519)
+.-.+|+|.|.+++|+|.+|..+|.++||+|++|.|+|.++.+..+|.|.-.+| .++ .+.|+++|..+|.
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 445689999999999999999999999999999999999999999999975544 455 3466666666653
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.61 E-value=0.0097 Score=48.87 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=54.1
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
.++|.+.+++|+|++..|..+|.+.|.++..++.++.++.+.-.+.+.+++. +.++|+.+|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~--~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED--SLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH--HHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc--cHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999998888888888743 577888888764
No 27
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.18 E-value=0.048 Score=44.91 Aligned_cols=62 Identities=8% Similarity=-0.000 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
++|.+.||+++|+..+|-..|.++|..+..++....++.++..+.+..+. .+.++|++++..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~--~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW--DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc--ccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999777777777653 367888877765
No 28
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.027 Score=47.33 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
++|.+.|++++|++.+|.+.|-++|+++.+.+..+.++.++-.+.+..+....+.++|+.+|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999888877777777776424568888877765
No 29
>PRK00194 hypothetical protein; Validated
Probab=96.01 E-value=0.033 Score=46.81 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=53.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.++|.|.|++++|++.+|.+.|.++|+.|.+.+..+.++.+.-.+.+..+....+.++|++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999988887877777777766434457788877654
No 30
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.96 E-value=0.058 Score=63.59 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=62.3
Q ss_pred ceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCC---HHHHHHHHH
Q 010053 441 MDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LIS---EEVIRSAIF 514 (519)
Q Consensus 441 ~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s---~e~L~~aL~ 514 (519)
+.|.+.-. +.-..|+|.++.++|+|.+|..+|..+||+|+.|.|+|.++.++.+|.|.-.++ .++ .+.|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 44555432 344689999999999999999999999999999999999999999999985444 232 357777777
Q ss_pred HHhh
Q 010053 515 QRMQ 518 (519)
Q Consensus 515 ~~l~ 518 (519)
.+|.
T Consensus 864 ~~l~ 867 (869)
T PRK04374 864 ACLD 867 (869)
T ss_pred HHhc
Confidence 7664
No 31
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.95 E-value=0.031 Score=65.71 Aligned_cols=69 Identities=13% Similarity=0.273 Sum_probs=57.4
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCCH---HHHHHHHHHHh
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LISE---EVIRSAIFQRM 517 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s~---e~L~~aL~~~l 517 (519)
+.-.+|+|.+++++|+|.+|..+|.++||+|+.|.|+|.++.+..+|.|.-.+| .++. +.|+++|..+|
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 344799999999999999999999999999999999999999999999976544 3543 45666665554
No 32
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.94 E-value=0.047 Score=64.51 Aligned_cols=78 Identities=10% Similarity=0.229 Sum_probs=61.9
Q ss_pred ceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CC-C---HHHHHHHH
Q 010053 441 MDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LI-S---EEVIRSAI 513 (519)
Q Consensus 441 ~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~-s---~e~L~~aL 513 (519)
+.|.+.-. ++-..|+|.+++++|+|++|..+|..+||+|+.|.|+|.++.++.+|.|.-.++ .+ + .+.|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 44444432 344689999999999999999999999999999999999999999999986544 23 3 24577777
Q ss_pred HHHhh
Q 010053 514 FQRMQ 518 (519)
Q Consensus 514 ~~~l~ 518 (519)
.++|.
T Consensus 882 ~~~L~ 886 (895)
T PRK00275 882 CEQLD 886 (895)
T ss_pred HHHHh
Confidence 77663
No 33
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.071 Score=43.14 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=47.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+|.|.|++++|++.+|.+.|.++|+.+.+.+..+. ++.+.-.+.+..+....+.++|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999988753 2333333444455444678889887765
No 34
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.072 Score=43.41 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=54.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
+|.|.+++|+|++.+|.++|.++|+++.+.+.++..+.+.-.+.+.++.+ .+.++|+.+|...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-~~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-ADSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-CCHHHHHHHHHHH
Confidence 47899999999999999999999999999998998887767777877765 5788898888764
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.69 E-value=0.063 Score=62.51 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=55.5
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LISEEVIRSAIFQRM 517 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s~e~L~~aL~~~l 517 (519)
-.+|+|.|++++|+|.+|..+|..+|++|++|.+++.++.++.+|.|.-.++ .++.+ .+.|.++|
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 4789999999999999999999999999999999999999999999986554 44433 56666554
No 36
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.66 E-value=0.09 Score=62.49 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=61.9
Q ss_pred ceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CC-C---HHHHHHHH
Q 010053 441 MDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LI-S---EEVIRSAI 513 (519)
Q Consensus 441 ~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~-s---~e~L~~aL 513 (519)
+.|.+.-. +.-..|.|.|++++|+|.+|..+|.++||+|++|.+++.++.+..+|.|.-.++ .+ + .+.|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 44555432 334689999999999999999999999999999999999999999999976443 22 3 35677777
Q ss_pred HHHhh
Q 010053 514 FQRMQ 518 (519)
Q Consensus 514 ~~~l~ 518 (519)
.++|.
T Consensus 911 ~~~L~ 915 (931)
T PRK05092 911 LAALA 915 (931)
T ss_pred HHHhc
Confidence 77663
No 37
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.64 E-value=0.11 Score=42.44 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=51.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC------CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR------ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~------d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
|.|.|++++|++.+|-+.|.++|+++.+.+..+.+ +.+.-.+.+.+++ ..+.++|+.+|..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~ 68 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEE 68 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHH
Confidence 78999999999999999999999999999998877 5666677777764 4578888887765
No 38
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=95.62 E-value=0.033 Score=43.09 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE 489 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d 489 (519)
.|.|.|++++|.|.+|..+|.++|+.|.++......+
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5889999999999999999999999999999999887
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.12 E-value=0.12 Score=60.81 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=55.7
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCC---HHHHHHHHHHHhh
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLIS---EEVIRSAIFQRMQ 518 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s---~e~L~~aL~~~l~ 518 (519)
+-..|.|.|++++|+|.+|..+|..+||+|+.|.|+|.++.++.+|.|. +....+ .+.|+++|.++|.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~-~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID-GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc-CCCCCCHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999999999999999999999999999994 222223 3466666666653
No 40
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.90 E-value=0.21 Score=58.20 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=59.8
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCC-CCHHHHHHHHHHHhh
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGL-ISEEVIRSAIFQRMQ 518 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~-~s~e~L~~aL~~~l~ 518 (519)
.+-+.|.|.|++++|++++|..+|..+|+.|++|++.+.++.++.+|.|.-.++. ...+.++++|.+++.
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 3557899999999999999999999999999999999988899999999854443 446788888887764
No 41
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.76 E-value=0.13 Score=60.44 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCC---HHHHHHHHHHHh
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LIS---EEVIRSAIFQRM 517 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s---~e~L~~aL~~~l 517 (519)
.-.+|+|.|.+++|+|.+|.++|.++|++|++|.+++.++.+..+|.+....+ .++ .+.|+++|..+|
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999999999999999999999986544 344 356666666554
No 42
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.64 E-value=0.23 Score=58.82 Aligned_cols=78 Identities=26% Similarity=0.312 Sum_probs=60.3
Q ss_pred ceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCC-CCCH---HHHHHHH
Q 010053 441 MDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEG-LISE---EVIRSAI 513 (519)
Q Consensus 441 ~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~-~~s~---e~L~~aL 513 (519)
+-|.+.-. .+-..|.|.|++++|+|.+|..+|..+||+|+.|.|.+.++ .++.+|.|.-.++ .++. +.|+++|
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L 768 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKAL 768 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 44444432 34578999999999999999999999999999999987766 9999999975544 3443 3467777
Q ss_pred HHHhh
Q 010053 514 FQRMQ 518 (519)
Q Consensus 514 ~~~l~ 518 (519)
.++|.
T Consensus 769 ~~aL~ 773 (884)
T PRK05007 769 EQALT 773 (884)
T ss_pred HHHHc
Confidence 77663
No 43
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.60 E-value=0.23 Score=58.57 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=60.4
Q ss_pred ceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe-eCCeEEEEEEEEcCCC-CCCHH---HHHHHH
Q 010053 441 MDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS-VRETMLQDVVVRIPEG-LISEE---VIRSAI 513 (519)
Q Consensus 441 ~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~-~~d~v~~ti~vkv~~~-~~s~e---~L~~aL 513 (519)
+-|.+.-. .+-..|.|.|++++|+|++|..+|..+||+|+.|.|.+ .++.++.+|.|.-.++ .++.+ .|+++|
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQAL 744 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 44555332 34568999999999999999999999999999999977 7889999999975544 34433 466777
Q ss_pred HHHhh
Q 010053 514 FQRMQ 518 (519)
Q Consensus 514 ~~~l~ 518 (519)
.++|.
T Consensus 745 ~~aL~ 749 (854)
T PRK01759 745 TKALN 749 (854)
T ss_pred HHHHc
Confidence 76664
No 44
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=94.52 E-value=0.24 Score=40.52 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=43.2
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCC
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPE 501 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~ 501 (519)
.+.|+|.+.+++|+|.+|..+|.+.++.+.++++... ++.....|.+++.+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 4679999999999999999999999999999999985 56888888888864
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.49 E-value=0.18 Score=59.37 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=56.3
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE-eeCCeEEEEEEEEcCCC-CCC----HHHHHHHHHHHh
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS-SVRETMLQDVVVRIPEG-LIS----EEVIRSAIFQRM 517 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS-~~~d~v~~ti~vkv~~~-~~s----~e~L~~aL~~~l 517 (519)
..-..|.|.+++++|+|.+|..+|..+||+|+.|.|. +.++.++.+|.|+-.++ .++ .+.|+++|.++|
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999 67789999999987654 233 234666666665
No 46
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.19 Score=58.01 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=61.3
Q ss_pred cceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCCHHHHHHHHHHH
Q 010053 440 IMDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LISEEVIRSAIFQR 516 (519)
Q Consensus 440 ~~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s~e~L~~aL~~~ 516 (519)
.|.|++.-. .+--+|+|.+.+++|+|..|-.+|.+++|++++|.|+|+|.++..+|.+....+ .++. ++++.+.++
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~-~~~q~l~~~ 856 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNA-ELRQSLLQR 856 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCH-HHHHHHHHH
Confidence 356666433 334689999999999999999999999999999999999999999999987654 3443 555665554
Q ss_pred h
Q 010053 517 M 517 (519)
Q Consensus 517 l 517 (519)
+
T Consensus 857 l 857 (867)
T COG2844 857 L 857 (867)
T ss_pred H
Confidence 4
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.91 E-value=0.35 Score=38.85 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC--CCCHHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG--LISEEVIRSAIFQR 516 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~--~~s~e~L~~aL~~~ 516 (519)
+|.|.||++.|+-.+|...+-+.||.+....+++.+.-.+..|-|.-... .+.=+-||+.|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 68999999999999999999999999999999999886655665543332 35567778777653
No 48
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.79 E-value=0.32 Score=37.79 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=37.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-----CCeEEEEEEEEcC
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-----RETMLQDVVVRIP 500 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-----~d~v~~ti~vkv~ 500 (519)
++|.++.++|.|.+|+++|.+.++++.+...... .+.....+.+.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 4688999999999999999999999998887654 3455555666664
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.54 E-value=0.52 Score=37.58 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=41.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCC
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPE 501 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~ 501 (519)
|+|.++.++|.|.+|+.+|.+.|..+.++++.... +.....|.+++.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~ 50 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS 50 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC
Confidence 78999999999999999999999999999987764 5666677887764
No 50
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.31 E-value=0.41 Score=56.80 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.8
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE-eeCCeEEEEEEEEcCCCC--CC----HHHHHHHHHHHhh
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS-SVRETMLQDVVVRIPEGL--IS----EEVIRSAIFQRMQ 518 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS-~~~d~v~~ti~vkv~~~~--~s----~e~L~~aL~~~l~ 518 (519)
+-..|.|.|++++|+|++|..+|..+||+|+.|.|. +.++.++.+|.|.-.++. .. .+.|+++|.++|.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999999984 556799999999755442 22 2346777776653
No 51
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.25 E-value=0.45 Score=56.21 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE-eeCCeEEEEEEEEcCCCCCC----HHHHHHHHHHHhh
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS-SVRETMLQDVVVRIPEGLIS----EEVIRSAIFQRMQ 518 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS-~~~d~v~~ti~vkv~~~~~s----~e~L~~aL~~~l~ 518 (519)
.+..-|-|.|++++|++++|..+|..+||+|+.|.+. +.++.++.+|.|.-+++... .+.|+++|.++|.
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLA 750 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHc
Confidence 3556899999999999999999999999999999995 56779999999975544322 4556666666653
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.74 E-value=0.54 Score=37.57 Aligned_cols=62 Identities=3% Similarity=-0.068 Sum_probs=44.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-CCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-RETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-~d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
.|+|.++.++|.+.+|+.+|.+.++++...+.+.. ++..-..|.+.+.+....-++|..+|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHh
Confidence 57899999999999999999999999999887653 345555677766543222344444443
No 53
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.42 E-value=0.92 Score=54.11 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=58.9
Q ss_pred ceEEEEEe--CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe-eCCeEEEEEEEEcCCCC-C-C---HHHHHHH
Q 010053 441 MDVDVKIV--GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS-VRETMLQDVVVRIPEGL-I-S---EEVIRSA 512 (519)
Q Consensus 441 ~~V~V~i~--g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~-~~d~v~~ti~vkv~~~~-~-s---~e~L~~a 512 (519)
+.|.++.. .+-..|.|.|++++|+|.+|..+|..+|++|+.|.+.+ .+++++.+|.|.-.++. . . .+.|+.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 44555443 34578999999999999999999999999999999987 56788999999765542 2 2 4456666
Q ss_pred HHHHh
Q 010053 513 IFQRM 517 (519)
Q Consensus 513 L~~~l 517 (519)
|.+++
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 66555
No 54
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.36 E-value=0.086 Score=49.11 Aligned_cols=51 Identities=35% Similarity=0.442 Sum_probs=44.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC--CCCCchhhHHHHHHHHHHHHHH
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPN--VSKMDKASLLADAVAYIKELRA 389 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~--~~k~dKaSIL~~AI~YIk~Lq~ 389 (519)
.+.-|++.||+|=..||+-|.+||.++|. ..|..|.--|.-|..||..|-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 36789999999999999999999999997 6777777789999999988754
No 55
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.24 E-value=0.76 Score=32.36 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=31.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR 488 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~ 488 (519)
|.+.|+.+++.+.+|+.+|...++.+.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 57889999999999999999999999999887654
No 56
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.04 E-value=0.14 Score=56.24 Aligned_cols=38 Identities=39% Similarity=0.673 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhccCCC----CCCCchhhHHHHHHHHHH
Q 010053 348 RQRRERLNHRFYALRSVVPN----VSKMDKASLLADAVAYIK 385 (519)
Q Consensus 348 R~RR~kln~~f~~LrslvP~----~~k~dKaSIL~~AI~YIk 385 (519)
++-|++||..+..|.+|+|. ++|.||.|||.-++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 55688999999999999997 899999999999999986
No 57
>PRK04435 hypothetical protein; Provisional
Probab=92.00 E-value=0.78 Score=42.71 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=52.8
Q ss_pred EeCcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-CCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 447 IVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-RETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 447 i~g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-~d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
..|..+.|.+.+++++|.|.+|+++|.+.++.|.+.+.+.. ++...-+|.+.+.+....-++|..+|.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999887653 466666788877644333455555554
No 58
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.48 E-value=0.94 Score=53.63 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=55.7
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe-eCCeEEEEEEEEcCCCC--CCHHHHHHHHHHHhh
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS-VRETMLQDVVVRIPEGL--ISEEVIRSAIFQRMQ 518 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~-~~d~v~~ti~vkv~~~~--~s~e~L~~aL~~~l~ 518 (519)
.+-..|-|.|+.++|++++|..+|..+||.|+.|.+.+ .++.++.+|.|.-+++. -..+.|+++|.++|.
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLA 760 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHc
Confidence 34567999999999999999999999999999999987 56799999999755442 124446666666653
No 59
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=91.40 E-value=0.091 Score=57.02 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPNV----SKMDKASLLADAVAYIKELRAKVDELE 395 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~~----~k~dKaSIL~~AI~YIk~Lq~~v~~Le 395 (519)
.|..++.+||-|-..||+-|.+|..+.--- ....|.-||-.|+.-|-.|+++|.+-.
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 567888999999889999999999887543 334588999999999999999998754
No 60
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=90.40 E-value=1.8 Score=44.61 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=51.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.+.|++++|+.+.|-..|-++|+.+++++..... +.++-.+.+.+++...+.++|++++..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 588999999999999999999999999999988754 555555556665445678899988876
No 61
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=90.32 E-value=1.3 Score=32.96 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=37.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcC
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIP 500 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~ 500 (519)
|+|.|+++++.+.+|++.|.+.++++.+..+...+ +.....+.+++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 47889999999999999999999999999887665 444445666654
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.20 E-value=2.3 Score=34.79 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=45.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
.|.+.-+.++|.|.+|++.|.++|+.+++..+....+ ...+.|.+.++.. ...+.++.+|.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~ 64 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALE 64 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHH
Confidence 3555667899999999999999999999997666643 5567888877643 44566666664
No 63
>PRK08577 hypothetical protein; Provisional
Probab=89.75 E-value=2.8 Score=38.15 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=48.8
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+.+.|+|.+.+++|.|.+|++.|.++++++.+.+..+.. +...-.+.+.+.+.....+++.+.|.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~ 121 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELK 121 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHH
Confidence 357899999999999999999999999999988877654 44445567777654233456665554
No 64
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=89.43 E-value=2.4 Score=43.79 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=52.4
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe--eCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS--VRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~--~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..++|.+.|++|+|+..+|-++|.++|+.+.+.+.++ .++.+.-.+.+.+.....+.++|+++|.+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~ 72 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 72 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3578999999999999999999999999999999998 77754444555552223457888888765
No 65
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.02 E-value=2.8 Score=32.37 Aligned_cols=59 Identities=8% Similarity=-0.063 Sum_probs=41.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
.|+|.++.++|.+.+|+..|.+.++.+........+ +..... +.+.+. -..+++..+|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~--i~~~~~-~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIY--MELEGV-GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEE--EEEecc-ccHHHHHHHHh
Confidence 478899999999999999999999999988877653 333323 444332 23444544443
No 66
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=88.97 E-value=0.29 Score=55.29 Aligned_cols=42 Identities=36% Similarity=0.667 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCchhhHHHHHHHHHHH
Q 010053 345 EAERQRRERLNHRFYALRSVVPN----VSKMDKASLLADAVAYIKE 386 (519)
Q Consensus 345 ~~ER~RR~kln~~f~~LrslvP~----~~k~dKaSIL~~AI~YIk~ 386 (519)
-+-|-||.|-|+-|+.|..+||- .+..|||||+.-||.|++-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 46799999999999999999995 5788999999999999874
No 67
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=88.93 E-value=2.3 Score=32.50 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=43.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+.|.++.++|.+.+|++.|.+.++.+.+..+.... +.....+.+ .+. ..+++.+.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~~--~~~~l~~~l~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DSP--VPEEVLEELK 60 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CCC--CCHHHHHHHH
Confidence 67889999999999999999999999999887754 555555555 332 2456666554
No 68
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=88.91 E-value=2.7 Score=32.27 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=38.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEc
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRI 499 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv 499 (519)
+|.+.+.+++|.|.+|+..|.+.++.+........ ++.....+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 57888999999999999999999999999887764 345555666665
No 69
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=88.85 E-value=2.5 Score=34.04 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=38.3
Q ss_pred EEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCC
Q 010053 455 RVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPE 501 (519)
Q Consensus 455 ~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~ 501 (519)
-+..++++|.|.+|++.|.+.|+.+.+..+....+ .--+.|.+.+..
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 34557899999999999999999999998777665 556777777754
No 70
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.77 E-value=3.2 Score=32.53 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=41.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAI 513 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL 513 (519)
+|+|.+.+++|.+.+|+..|.+.++.+...+..... +.....+.+... +.++++..+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i 60 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAAL 60 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHH
Confidence 689999999999999999999999999998876543 433333444332 345554443
No 71
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=88.77 E-value=2.6 Score=34.02 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=33.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCe
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRET 490 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~ 490 (519)
.|+|.|.++.|++.+|+.+|.+.++.+...++... +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47899999999999999999999999999998765 44
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.36 E-value=2.3 Score=33.39 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=41.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-C-eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-E-TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d-~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
-+.+.+++++|.|.+|+..|.++++.+......... + .-...+.++..+ ..+.+++.|.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence 477899999999999999999999999988766542 2 222234444322 34566666554
No 73
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.24 E-value=0.44 Score=50.88 Aligned_cols=42 Identities=40% Similarity=0.658 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCchhhHHHHHHHHHHH
Q 010053 345 EAERQRRERLNHRFYALRSVVPN----VSKMDKASLLADAVAYIKE 386 (519)
Q Consensus 345 ~~ER~RR~kln~~f~~LrslvP~----~~k~dKaSIL~~AI~YIk~ 386 (519)
-+-|.||++-|-.|+.|..++|- .+..||++|+.-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 45799999999999999999995 4679999999999999985
No 74
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.01 E-value=3.6 Score=32.40 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=42.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.+..++++|.|.+|++.|.+.++.+.+...... .+.....|.+... ..++++++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence 57788999999999999999999999998765443 2344445555432 24577777654
No 75
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.93 E-value=2.2 Score=32.65 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=40.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+|.|.-+.++|.|.++++.|.+.|+.+.+....... +... +.+.+++ .+++.+.|.+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~--v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKAL--LIFRTED----IEKAIEVLQE 59 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEE--EEEEeCC----HHHHHHHHHH
Confidence 367788899999999999999999999877665443 3333 3444443 5566666654
No 76
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=87.82 E-value=3.6 Score=32.35 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=42.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.|..++++|.|.+|+++|.+.|+.+.+.-+...++. -.+.+..++ .+.+.+.|.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~----~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD----PDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC----HHHHHHHHHH
Confidence 46778899999999999999999999998887766663 344444432 4566666554
No 77
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.48 E-value=3.3 Score=31.79 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=40.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+|.+.+++++|.+.+|+..|.++++.+........ ++..... +.+.+. ..+++.++|.
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~ 60 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIK 60 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHH
Confidence 46789999999999999999999999998876652 2333323 344433 3345555544
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=87.43 E-value=2.6 Score=43.59 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=47.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE--eeCCeEEEEEEEEc-CCCCCCHHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS--SVRETMLQDVVVRI-PEGLISEEVIRSAIFQR 516 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS--~~~d~v~~ti~vkv-~~~~~s~e~L~~aL~~~ 516 (519)
.++|.|.|++++|+.++|-..|-+.|+.+++++-. +..+.++-.+.+.. .....+.++|+++|...
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l 77 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPV 77 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999885 22332222222221 12346788999888753
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=87.14 E-value=3.4 Score=42.69 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEE-EEEEEcCCCCCCHHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQ-DVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~-ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
.+.|.|.|++++|+..+|-+.|-++++++.+.+..+... .+|. .+.+..+. ..+.++|+.+|...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999874332 2322 33333343 35788999888753
No 80
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.05 E-value=4.1 Score=32.47 Aligned_cols=61 Identities=10% Similarity=-0.010 Sum_probs=41.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC---CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR---ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~---d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+.+.-+.++|.|.+|++.|.+.|..+++......+ +.-...+.+.++..- ..+.|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhC
Confidence 56677899999999999999999999998776652 233344444442211 14566666543
No 81
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.79 E-value=5.6 Score=32.31 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=43.7
Q ss_pred EEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 455 RVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 455 ~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
-+..++++|.|.++|..+...|+.+.+..+-...+ .--|.|.+.++. ..+.++++|.
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~ 61 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLIS 61 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHH
Confidence 34557889999999999999999999999887766 445788888764 3445655554
No 82
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=83.34 E-value=0.96 Score=39.65 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=37.5
Q ss_pred ceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEec--CC---ceEeeccccccccCHHHHHHHH
Q 010053 140 VLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVST--AC---GVVELGSSDLIKEDWSLVQLAK 207 (519)
Q Consensus 140 ~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~--~~---GVvELGSt~~i~E~~~~v~~vk 207 (519)
+.+.++.+++++|+. .+...+.....+...|++.++|||+ .+ |||.|++.+.-.=+..-+..+.
T Consensus 69 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~ 137 (148)
T PF13185_consen 69 LWEGVLRTGEPIIIN----DDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPNAFSEEDLELLE 137 (148)
T ss_dssp TTSHHHHHTS-EEES----CCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT---HHHHHHHH
T ss_pred HHHHHHhcCceEEEe----CccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCCCcCHHHHHHHH
Confidence 334458899999999 1112222234455689999999994 22 8999999776444444444333
No 83
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=82.60 E-value=5 Score=30.24 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=36.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEE
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVR 498 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vk 498 (519)
|.|..+.++|.|.++.+.|.+.++.+.+..+...+ +.-+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 46788999999999999999999999888877765 5555555554
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.48 E-value=8.6 Score=32.92 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
.-|-+..+.++|.|.+++..|...|+.+.+..+-...+ .--|.|.+.++.. . .+.++++|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~ 76 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIK 76 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHH
Confidence 45556668899999999999999999999998877654 4457888887644 2 356666554
No 85
>PRK07334 threonine dehydratase; Provisional
Probab=81.67 E-value=6.4 Score=42.39 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=44.8
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-----CCeEEEEEEEEcCC
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-----RETMLQDVVVRIPE 501 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-----~d~v~~ti~vkv~~ 501 (519)
+-.+.|+|.+.+++|+|.+|+.+|.+.++.|.++++... ++.....|++++.+
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 445899999999999999999999999999999998764 45666677777764
No 86
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=5.8 Score=46.34 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=55.0
Q ss_pred EEEEeCcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 444 DVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 444 ~V~i~g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
.++...+..-|-|.|+.++++++.|.-++...|++|+.|++-+.. |..+.||.|.-.++..-+++.+.++.
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~ 748 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALR 748 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHH
Confidence 444456677899999999999999999999999999999998755 57999999886555322344444443
No 87
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=78.10 E-value=2.3 Score=47.32 Aligned_cols=77 Identities=16% Similarity=0.313 Sum_probs=52.7
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeeccccc----cccCHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDL----IKEDWSL 202 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~----i~E~~~~ 202 (519)
.|..|+| +.|+++.+++|+++.+...-+. |....-....|+++++|||+.. |||.+.+... -.+|.++
T Consensus 68 ~~~~~~g-i~g~v~~~~~pvii~Dv~~d~~--~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~l 144 (534)
T TIGR01817 68 RYRVGEG-AIGQIVATGNSLVVPDVAAEPL--FLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRF 144 (534)
T ss_pred cccCCcc-HHHHHHhcCCeEEecccccCch--hhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHH
Confidence 4677999 9999999999999998654221 1111112236789999999633 7999998743 3456666
Q ss_pred HHHHHHHcC
Q 010053 203 VQLAKSLFG 211 (519)
Q Consensus 203 v~~vk~~f~ 211 (519)
+..+-....
T Consensus 145 L~~lA~~ia 153 (534)
T TIGR01817 145 LEMVANLIG 153 (534)
T ss_pred HHHHHHHHH
Confidence 666655543
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=75.23 E-value=5.8 Score=34.15 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=53.3
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
-++|.|...+|+|..+.|..+|-++|+.++..+=+...+++--.+.+..+....+-..++..|...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~ 68 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAE 68 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHH
Confidence 478999999999999999999999999999999888888776666676665555566666655543
No 89
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=75.16 E-value=3.8 Score=47.85 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=47.7
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeeccccccccCHHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLIKEDWSLVQ 204 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i~E~~~~v~ 204 (519)
.|+.|+| +.|+++.+|+|+++.+...-+.+.+... +...+++.++|||+.. |||.+.....-.-+.+-+.
T Consensus 67 ~l~~geG-i~G~Va~tg~pV~V~Dv~~dprf~~~~~--~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~~Fs~~d~~ 141 (748)
T PRK11061 67 TLAFDEG-IVGLVGRLAEPINLADAQKHPSFKYIPS--VKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEES 141 (748)
T ss_pred eccCCcc-hHHHHhccCceEEECCcccCcccccCcc--ccCccceEEEEEEEeeCCEEEEEEEEeeCCCCCCCHHHHH
Confidence 5788999 9999999999999987755332221111 1236899999999644 7888777665333443333
No 90
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=73.75 E-value=1.9 Score=43.84 Aligned_cols=50 Identities=36% Similarity=0.456 Sum_probs=43.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPN---VSKMDKASLLADAVAYIKELRA 389 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~---~~k~dKaSIL~~AI~YIk~Lq~ 389 (519)
+..=+..||+|=-.||+-|..||.++|. ..|+.|.-.|.-|-+||..|++
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 4455678999999999999999999995 6788888899999999998875
No 91
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=72.61 E-value=24 Score=29.11 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=42.6
Q ss_pred eecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecC-----CceEeecccc-c---cccCHHHH
Q 010053 133 FAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTA-----CGVVELGSSD-L---IKEDWSLV 203 (519)
Q Consensus 133 F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~-----~GVvELGSt~-~---i~E~~~~v 203 (519)
|+.+.+ .-++++.++.++.+.+..... .+.........|++.++|+|+. -|++.+.+.+ . -.++..++
T Consensus 52 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~~~~~~~~~~~~~~~~l 128 (149)
T smart00065 52 YPLGEG-LAGRVAETGRPLNIPDVEADP--VFALDLLGRYQGVRSFLAVPLVADGELVGVLALHNKDSPRPFTEEDEELL 128 (149)
T ss_pred ecCCCC-hHHHHHHcCCeEEeechhhCC--ccccccccceeceeeEEEeeeeecCEEEEEEEEEecCCCCCCCHHHHHHH
Confidence 444455 667777777777776544322 2222333334569999999943 2788887762 1 23344555
Q ss_pred HHHHHHc
Q 010053 204 QLAKSLF 210 (519)
Q Consensus 204 ~~vk~~f 210 (519)
+.+...+
T Consensus 129 ~~~~~~i 135 (149)
T smart00065 129 QALANQL 135 (149)
T ss_pred HHHHHHH
Confidence 5554443
No 92
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=70.77 E-value=15 Score=28.57 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=40.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+-+..+.++|.+.+|.+.|.+.|+.+.+..+... ++.....+.+.. .. .+++..+|.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~---~~-~~~~~~~l~ 60 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE---PV-PDEVLEELR 60 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC---CC-CHHHHHHHH
Confidence 3468899999999999999999999988876553 456655555543 22 335555554
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=70.18 E-value=12 Score=36.37 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=50.0
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
...++|.+.+++|+|++..|-++|.++|..+..++.+..++.+--.+.+..+. .+.+.|+.+|..
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~--~~~~~le~~L~~ 70 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW--NAITLIESTLPL 70 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh--hHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999998443333333322 256677777654
No 94
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=69.97 E-value=11 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 460 DINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 460 ~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
+++|.|.+|+..+.-.|+.+.+.+++.. ++..-.++.+.-.+ -..++|..-|.+-
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhcc
Confidence 4689999999999999999999999984 44666666666433 3456677666553
No 95
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=68.72 E-value=18 Score=34.19 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.|.-++++|.|.+|...|...|+.+.+..+...+ +....+|++..++ -..++|...|.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~--~~i~qi~kQl~K 65 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDD--KVLEQITKQLNK 65 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCH--HHHHHHHHHHhc
Confidence 577888999999999999999999999999888776 3555666766422 235666666654
No 96
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=68.69 E-value=6.1 Score=30.69 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=34.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEc
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRI 499 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv 499 (519)
|-+.+.+++|++.+|+..|.+.++.+...+....++..+-.+.+.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 3457889999999999999999999877765554455544455444
No 97
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.23 E-value=25 Score=28.86 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=42.7
Q ss_pred EEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 456 VQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 456 I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+..+.++|.|.+++..|+..|+.+.+..+-...+ .--|.|.+.++... +.++++|.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~---~~i~~~l~ 61 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ---RRLDELVQ 61 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH---HHHHHHHH
Confidence 3347889999999999999999999998777654 44578888876432 36666664
No 98
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=66.17 E-value=30 Score=35.61 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=50.4
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..+.+.+.||.++|+.+.|-.-|-+.|..+++++--... +++|--+....+++..+.+.|++++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 457899999999999999999999999999998766322 344444444444445788899888765
No 99
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=65.34 E-value=33 Score=43.26 Aligned_cols=69 Identities=16% Similarity=0.359 Sum_probs=55.2
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-----CeEEEEEEEEcCCC-CCCHHHHHHHHHHHhh
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-----ETMLQDVVVRIPEG-LISEEVIRSAIFQRMQ 518 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-----d~v~~ti~vkv~~~-~~s~e~L~~aL~~~l~ 518 (519)
+.+.++|..+.++.+|++||-.|+++||.|+...--.+. ...+|.|.+....+ ....++++..+.+++.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 458899999999999999999999999999987544333 26789999998765 3677778777776653
No 100
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.32 E-value=39 Score=28.07 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=39.1
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
|.++.|.-|.++|-|.+++++|- +..|......... +...-.+.+++.++.-..+++.++|.+
T Consensus 1 e~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 1 EALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred CeEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 45789999999999999999999 5555554444332 233334555555422224455555543
No 101
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=65.18 E-value=10 Score=38.39 Aligned_cols=52 Identities=38% Similarity=0.447 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 010053 341 LNHVEAERQRRERLNHRFYALRSVVPNV---SKMDKASLLADAVAYIKELRAKVD 392 (519)
Q Consensus 341 ~~h~~~ER~RR~kln~~f~~LrslvP~~---~k~dKaSIL~~AI~YIk~Lq~~v~ 392 (519)
..-+..||+|=..||.-|..||.+||.. .|..|-.-|.-|-.||--|-..+.
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3455789999999999999999999974 455666789999999988866543
No 102
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=64.87 E-value=37 Score=33.08 Aligned_cols=63 Identities=8% Similarity=0.131 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC------eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE------TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d------~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+.|.|..++++|++.+|-++|-++|+.+.+.+.-+.+. .+.-.+.+.++.+. ..++|+.+|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~-~~~~L~~~l~~ 164 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ-DAANIEQAFKA 164 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC-CHHHHHHHHHH
Confidence 67899999999999999999999999999988777652 33345666666553 47788887764
No 103
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=64.28 E-value=23 Score=33.68 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=45.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.|.-++++|.|.+|...|...|+.+.+..+.... +....+|++..++. ..+++..-|.+
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~--~i~qi~kQl~K 66 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQ--VIEQITKQLNK 66 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHH--HHHHHHHHHhc
Confidence 577888999999999999999999999999888765 45556666654322 24556555554
No 104
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.72 E-value=37 Score=26.82 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=39.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
++|.-|.++|-|.++++.|.+ +.+|+..+....+ +.....+.+++.+. -..++|.++|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~-~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR-EDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH-HHHHHHHHHHHH
Confidence 357779999999999999999 9999988776643 12223344454432 124456666554
No 105
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=61.62 E-value=50 Score=27.47 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=44.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.+.-.+++|.|.+|+..+.-.|+.+.+.++.... +..-.++++. + ....|+|..-|.+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~K 66 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhc
Confidence 567777899999999999999999999999988854 4555566663 2 2345666666554
No 106
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=59.66 E-value=29 Score=33.40 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~~l 517 (519)
.|.|.-.+++|.|.+|...|...|+.+.+.++.... +..-.++++. .+.-..++|+..|.+-+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GDDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CCHHHHHHHHHHHHHHh
Confidence 578888999999999999999999999999887633 3443445544 33212678888887643
No 107
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=58.19 E-value=37 Score=28.26 Aligned_cols=61 Identities=3% Similarity=0.029 Sum_probs=43.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC--eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE--TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d--~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.+.-.+++|.|.+|...+.-.|+.+.+.+++...+ ..-.+|++.-.+. ..++|..-|.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~--~i~qi~kQL~K 66 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTEN--EATLLVSQLKK 66 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHH--HHHHHHHHHhC
Confidence 5778888999999999999999999999888886554 5555666542222 24455555543
No 108
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=54.59 E-value=67 Score=37.44 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=52.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 010053 454 IRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG-LISEEVIRSAIFQRM 517 (519)
Q Consensus 454 I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~-~~s~e~L~~aL~~~l 517 (519)
.-+.|+++.|.+.++.-.|--+++.|++|++.+ ++..+..|.|...-+ ..++..+++++..++
T Consensus 550 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 613 (693)
T PRK00227 550 TVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGV 613 (693)
T ss_pred EEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhh
Confidence 334569999999999999999999999999999 777778888876543 567888888887765
No 109
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=54.39 E-value=43 Score=39.29 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=48.2
Q ss_pred eEEEEEeCc-----EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCC
Q 010053 442 DVDVKIVGS-----EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPE 501 (519)
Q Consensus 442 ~V~V~i~g~-----ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~ 501 (519)
-|+|+-.+. .+-|+|.+.++.|+|.+|..+|.+.++.|.++++.... +.....|.++|.+
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 466766432 35789999999999999999999999999999987653 5666678888865
No 110
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=53.75 E-value=40 Score=39.12 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=48.4
Q ss_pred eEEEEEeCc-----EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCC
Q 010053 442 DVDVKIVGS-----EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPE 501 (519)
Q Consensus 442 ~V~V~i~g~-----ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~ 501 (519)
-|.|+-... .+.|+|.+.+++|+|.+|+.+|.+.+..+.++++.... ++....|.++|.+
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 466665432 35799999999999999999999999999999998764 5666677888764
No 111
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=53.52 E-value=72 Score=24.17 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=35.9
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~l 517 (519)
+|.|.+. ..++.+.+|+++|.+.++.|.-.+.+. .+ ..+.+-+++. +.+....+|++++
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~---~~is~~v~~~--~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE---RNISAVIDED--DATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc---cEEEEEEeHH--HHHHHHHHHHHHH
Confidence 4555553 457899999999999999997665443 22 2233323321 1344456666554
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=52.44 E-value=69 Score=23.53 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=26.7
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEEEEEe
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHASVSS 486 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~asvS~ 486 (519)
+|.|.+. ...+.+.+++++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5666544 557899999999999999998776544
No 113
>PRK08198 threonine dehydratase; Provisional
Probab=52.02 E-value=60 Score=34.81 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=48.2
Q ss_pred eCcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-----CCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 448 VGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-----RETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 448 ~g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-----~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.+..+.+.|.-++++|.|.+|++.|.+.|..|.+.+.... .+.+-..|.+++.+.. ..++|..+|.+
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~-~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE-HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH-HHHHHHHHHHH
Confidence 3677889999999999999999999999998888877642 2445555666653221 34455555543
No 114
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=51.50 E-value=19 Score=31.59 Aligned_cols=62 Identities=19% Similarity=0.340 Sum_probs=42.9
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccc--------------hhhhhhhhhcCccEEEEEecCC-----ceEeecc
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYE--------------CERVKEARMHGIQTLVCVSTAC-----GVVELGS 192 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~--------------~~r~~~a~~aGiqTivciP~~~-----GVvELGS 192 (519)
.+..+.+ ..|+++.+++++.+.+....+... +.+.+++ ..|+++++|+|+.. |||.|..
T Consensus 51 ~~~~~~~-~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~l~vPi~~~g~~~G~l~l~~ 128 (154)
T PF01590_consen 51 RLSMDES-ICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFLA-EYGVRSYLCVPIISGGRLIGVLSLYR 128 (154)
T ss_dssp EEETTSS-HHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHHH-TTTESEEEEEEEEETTEEEEEEEEEE
T ss_pred ccccccc-HHHHHHhCCCeEeeccccccccccccccccccccccccccccccc-cccCceeeEeeeecccCcEEEEEEEE
Confidence 3555677 889999999999988864432211 1122221 47999999999432 7999988
Q ss_pred ccc
Q 010053 193 SDL 195 (519)
Q Consensus 193 t~~ 195 (519)
+..
T Consensus 129 ~~~ 131 (154)
T PF01590_consen 129 TRP 131 (154)
T ss_dssp ESS
T ss_pred CCC
Confidence 877
No 115
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=50.66 E-value=48 Score=38.66 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=48.2
Q ss_pred eEEEEEeCc-----EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCC
Q 010053 442 DVDVKIVGS-----EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPE 501 (519)
Q Consensus 442 ~V~V~i~g~-----ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~ 501 (519)
-|+|+-... .+.|+|.+.++.|+|.+|+.+|.+.++.+.++++...++ .....|.++|.+
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 466766432 357999999999999999999999999999999877654 555668888765
No 116
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=50.59 E-value=44 Score=28.48 Aligned_cols=62 Identities=13% Similarity=0.253 Sum_probs=45.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC--eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE--TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d--~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|.+.-.+++|.|.+|-..|...|+.+.+.+++...+ .--.+|++..++.. ..+++.+-|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~-~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDT-SLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHH-HHHHHHHHHhC
Confidence 5778888999999999999999998888888777665 44556666544332 24566665554
No 117
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=50.31 E-value=80 Score=29.33 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=49.4
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE-eeCCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS-SVRETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS-~~~d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+..+.+.+.-..|-|.|+++++++-..++.|++.+=+ ..+++.-.|+.+....-..+.+.+..+|.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~ 136 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLR 136 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHh
Confidence 4556788889999999999999999999999987655 56677777777765532344555555554
No 118
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=48.77 E-value=79 Score=33.56 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=47.3
Q ss_pred eCcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee-----CCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 448 VGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV-----RETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 448 ~g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~-----~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|..+.|.|.-+.++|.|.+|++.|.+.+..|++...... .+.....|.+++.+ .-..++|..+|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 3667789999999999999999999999999998876522 23444556666543 2223455555543
No 119
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=48.72 E-value=66 Score=26.25 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=36.5
Q ss_pred cceEEEEEeCcEEEEEEEcCCCC------ChHHHHHHHHHhcCceEEEEEEEee
Q 010053 440 IMDVDVKIVGSEAMIRVQCPDIN------YPAAKLMDVLRDLEFHVHHASVSSV 487 (519)
Q Consensus 440 ~~~V~V~i~g~ev~I~I~c~~r~------~~L~~Im~aLeel~LdV~~asvS~~ 487 (519)
...|.++..++.+-|+|.+.... .-+..|-++|...|+.+.+.+++..
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 36777788899999999998764 4677889999999999998887653
No 120
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=47.88 E-value=91 Score=24.14 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=23.2
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEE
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHA 482 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~a 482 (519)
.|.|.+. ..++.+.+++.+|.+.++.|...
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEE
Confidence 3444443 56899999999999999999733
No 121
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=46.79 E-value=88 Score=25.16 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.2
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhcCceEEEEEE
Q 010053 453 MIRVQC---PDINYPAAKLMDVLRDLEFHVHHASV 484 (519)
Q Consensus 453 ~I~I~c---~~r~~~L~~Im~aLeel~LdV~~asv 484 (519)
+|.|.+ ...++.+.+|+++|.+.++.|.....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 455543 45578999999999999999987753
No 122
>PRK06382 threonine dehydratase; Provisional
Probab=45.45 E-value=80 Score=34.07 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=47.0
Q ss_pred eCcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEE----ee-CCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 448 VGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVS----SV-RETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 448 ~g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS----~~-~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.+..+.|.|.-+.++|.|.+|++.|.+.++.|++.... .. .+....+|.++..+. -..++|+++|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~-~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ-DHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH-HHHHHHHHHHHH
Confidence 36778899999999999999999999999999987764 22 234445566655421 123466666654
No 123
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.16 E-value=1.2e+02 Score=23.08 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=25.5
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEEEEEe
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHASVSS 486 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~asvS~ 486 (519)
+|.|.+. .+++.+.+++++|.+.+++|.-.+.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4444443 457899999999999999997665444
No 124
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.72 E-value=24 Score=24.58 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010053 346 AERQRRERLNHRFYALRS 363 (519)
Q Consensus 346 ~ER~RR~kln~~f~~Lrs 363 (519)
-=|+||+.|+.++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 348899999999999986
No 125
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.26 E-value=1.4e+02 Score=22.57 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=35.8
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~l 517 (519)
+|.|.+. ..++.+.+++++|.+.+++|.-.+.+..+ .-.+|.+ ++. +.+....+|++++
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v--~~~--d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGV--HNE--DADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEE--eHH--HHHHHHHHHHHHH
Confidence 4555553 56789999999999999999766543322 1122333 321 1345566666655
No 126
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.13 E-value=1.8e+02 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred EEEEE---cCCCCChHHHHHHHHHhcCceEEEEEE
Q 010053 453 MIRVQ---CPDINYPAAKLMDVLRDLEFHVHHASV 484 (519)
Q Consensus 453 ~I~I~---c~~r~~~L~~Im~aLeel~LdV~~asv 484 (519)
+|.|. .+..+|.+.+|+++|.+.++.|-....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45553 456789999999999999999988854
No 127
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=42.02 E-value=37 Score=39.50 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHHhh
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQ 518 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~l~ 518 (519)
.+++|....+.|+|..|+.+|. ||.-+.+++.+..++.+|.++ ++ .+-..+..+|..++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~-~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PG-FDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Cc-ccHHHHHHHHHHHHh
Confidence 6899999999999999999999 999999999999999888887 22 235567777777654
No 128
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.27 E-value=95 Score=27.74 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
+-|-+..++++|.|.+||..|...|+.+.+..+-...+ .-=|.|.+.+... .++++.+|.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~---~~~~~~aL~ 102 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH---RSDLLQLIS 102 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC---HHHHHHHHH
Confidence 34444458889999999999999999999998877654 3347777777532 234555554
No 129
>PRK11899 prephenate dehydratase; Provisional
Probab=39.83 E-value=1.6e+02 Score=30.48 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=48.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
...|-+..++++|.|.++|.+|...|+......+-...+ .--|.|.+.+.... ..+.++.||.+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~-~d~~v~~aL~~ 258 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP-EDRNVALALEE 258 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHH
Confidence 344445557899999999999999999999999887765 45688888886543 34466777654
No 130
>smart00338 BRLZ basic region leucin zipper.
Probab=39.06 E-value=1.3e+02 Score=23.56 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010053 380 AVAYIKELRAKVDELEAKLREQAR 403 (519)
Q Consensus 380 AI~YIk~Lq~~v~~Le~~~~~l~~ 403 (519)
--.||..|+.+++.|+.+...|..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888877763
No 131
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=38.32 E-value=1.1e+02 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHhcCceEEEEEEEe
Q 010053 461 INYPAAKLMDVLRDLEFHVHHASVSS 486 (519)
Q Consensus 461 r~~~L~~Im~aLeel~LdV~~asvS~ 486 (519)
.++.+.+++++|.+.++.+.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 56899999999999999998776543
No 132
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=37.87 E-value=9.4 Score=43.69 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCCC-----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 338 ESPLNHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 338 ~~~~~h~~~ER~RR~kln~~f~~LrslvP~~-----~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
..+..|..+|.+||..++-.|..|-+++-+. .|+.+..-+..++.||..++.....+.++-..++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr 719 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR 719 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh
Confidence 4678899999999999999999999998763 4566667799999999999887777665555444
No 133
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=35.80 E-value=1.3e+02 Score=22.82 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEE
Q 010053 460 DINYPAAKLMDVLRDLEFHVHHASV 484 (519)
Q Consensus 460 ~r~~~L~~Im~aLeel~LdV~~asv 484 (519)
...+.+.+|+++|.+.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 5578999999999999999998854
No 134
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=34.56 E-value=55 Score=25.85 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=27.5
Q ss_pred cEEEEEEEcC----CCCChHHHHHHHHHhcCceEEEEE
Q 010053 450 SEAMIRVQCP----DINYPAAKLMDVLRDLEFHVHHAS 483 (519)
Q Consensus 450 ~ev~I~I~c~----~r~~~L~~Im~aLeel~LdV~~as 483 (519)
+-..|.|.++ ..+|.+.+++.+|.+.|+.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3456777777 367999999999999999998887
No 135
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=33.09 E-value=2.1e+02 Score=24.99 Aligned_cols=63 Identities=10% Similarity=0.092 Sum_probs=45.1
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC--eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE--TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d--~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+-..|.+.-.+++|.|.+|...|..-|..+.+.+++...+ .--.+|.+. ++ -..+++.+-|.+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~--~~i~Qi~kQL~K 71 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DD--QRLEQMISQIEK 71 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-Cc--hHHHHHHHHHhC
Confidence 3457888889999999999999999998888877776665 334455554 32 245666665554
No 136
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.55 E-value=51 Score=38.06 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=46.2
Q ss_pred cCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhh-cCccEEEEEec--CC---ceEeeccccc---cccCHHHHHH
Q 010053 135 IGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARM-HGIQTLVCVST--AC---GVVELGSSDL---IKEDWSLVQL 205 (519)
Q Consensus 135 ~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~-aGiqTivciP~--~~---GVvELGSt~~---i~E~~~~v~~ 205 (519)
.+.| +.|+++.+|+|+=+..........+.+...... .++++++|||+ .+ |||.+++... =.+|..+++.
T Consensus 254 ~~~~-l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~~~~F~~~dl~lL~~ 332 (686)
T PRK15429 254 EAGT-LTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLRQ 332 (686)
T ss_pred cccc-hHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCCCCcCCHHHHHHHHH
Confidence 3447 999999999999775543322222333332222 57999999994 32 8999976542 2245555555
Q ss_pred HHHHc
Q 010053 206 AKSLF 210 (519)
Q Consensus 206 vk~~f 210 (519)
|-...
T Consensus 333 iA~~~ 337 (686)
T PRK15429 333 IAERV 337 (686)
T ss_pred HHHHH
Confidence 54443
No 137
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=32.31 E-value=26 Score=33.10 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 010053 346 AERQRRERLNHRFYALRSVVPNV 368 (519)
Q Consensus 346 ~ER~RR~kln~~f~~LrslvP~~ 368 (519)
.||.|-.++++.+.-|+.|+|..
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58999999999999999999973
No 138
>PRK08526 threonine dehydratase; Provisional
Probab=31.96 E-value=1.9e+02 Score=31.33 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCe-----EEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRET-----MLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~-----v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
|..+.+.|.-|.++|-|.++++.+-+.+.+|++......... +...+.+++.+.. ..++|.++|.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~l~ 393 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE-HQEEIRKILT 393 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH-HHHHHHHHHH
Confidence 778899999999999999999999999999999888664432 3344555554321 2344555553
No 139
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=31.32 E-value=76 Score=28.03 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=29.5
Q ss_pred cCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEe
Q 010053 135 IGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVS 182 (519)
Q Consensus 135 ~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP 182 (519)
.|.+ ..-..-..+.-+|+..++ ++.+.|.+.---... =|+|||+|
T Consensus 55 ~~~~-g~~~i~i~~g~vrv~~s~-CpdkiCv~~G~I~~~-G~~IVCLP 99 (113)
T PF07009_consen 55 DGDG-GYNTIEIKDGKVRVIESD-CPDKICVKTGWISRP-GQSIVCLP 99 (113)
T ss_dssp ETTT-CEEEEEEETTEEEEEEES-TSS-HHHHS-SB-ST-T-EEEETT
T ss_pred ecCC-cEEEEEEECCEEEEEECC-CCCcchhhCCCcCCC-CCEEEEcC
Confidence 3445 566778888889999876 788888764322222 38999987
No 140
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=30.22 E-value=46 Score=36.99 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=51.2
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhh--hhhcCccEEEEEec-----CCceEeeccccc---cccCHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKE--ARMHGIQTLVCVST-----ACGVVELGSSDL---IKEDWS 201 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~--a~~aGiqTivciP~-----~~GVvELGSt~~---i~E~~~ 201 (519)
.|..|+|...|.++.+|.++.+.+....+ ..+.|... +.-.||..++|||+ .-|||.+.+... -.++..
T Consensus 65 ~~~~geGP~l~av~~~g~~v~v~~~~~~p-~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~~~~~~f~~~~~~ 143 (509)
T PRK05022 65 RFALEEHPRLEAILRAGDPVRFPADSELP-DPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDE 143 (509)
T ss_pred ccCCCcchHHHHHHhcCCeEEEecCCCCC-cccccccccccccCCcceEEEEEEEECCEEEEEEEEeeCCCCcCCHHHHH
Confidence 57888884458888889999887543322 22333211 22368999999995 237889887653 344566
Q ss_pred HHHHHHHHcC
Q 010053 202 LVQLAKSLFG 211 (519)
Q Consensus 202 ~v~~vk~~f~ 211 (519)
++..+-+.+.
T Consensus 144 ~l~~~a~~~a 153 (509)
T PRK05022 144 ELRALAALAA 153 (509)
T ss_pred HHHHHHHHHH
Confidence 7776666554
No 141
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=26.80 E-value=1.8e+02 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.6
Q ss_pred EEEEE---cCCCCChHHHHHHHHHhcCceEEEEEEE
Q 010053 453 MIRVQ---CPDINYPAAKLMDVLRDLEFHVHHASVS 485 (519)
Q Consensus 453 ~I~I~---c~~r~~~L~~Im~aLeel~LdV~~asvS 485 (519)
+|.|. .....+.+.+++++|.+.++.+.-.+.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 55663 3356789999999999999999777654
No 142
>PRK11898 prephenate dehydratase; Provisional
Probab=26.77 E-value=2.5e+02 Score=28.89 Aligned_cols=63 Identities=6% Similarity=0.063 Sum_probs=45.9
Q ss_pred EEEEEEcCC-CCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 452 AMIRVQCPD-INYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 452 v~I~I~c~~-r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..|-+..+. ++|.|.++|..|...|+.+++..+-...+ .--|.|.+.++.. .+.+.++++|.+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~-~~~~~~~~al~~ 261 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH-IDDVLVAEALKE 261 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc-CCCHHHHHHHHH
Confidence 445566655 49999999999999999999999887665 3347777887543 344466666643
No 143
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.59 E-value=2.2e+02 Score=22.10 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEE
Q 010053 460 DINYPAAKLMDVLRDLEFHVHHASVS 485 (519)
Q Consensus 460 ~r~~~L~~Im~aLeel~LdV~~asvS 485 (519)
..++.+.+++++|.+.++.++....|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC
Confidence 56789999999999988888665544
No 144
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.08 E-value=3e+02 Score=21.01 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=20.7
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEE
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHA 482 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~a 482 (519)
+|.|.+. ..++.+.+++++|.+.++.+++-
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~ 35 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMICY 35 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEEEE
Confidence 4555554 45789999999998755555443
No 145
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.94 E-value=2.7e+02 Score=20.46 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=24.8
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhcCceEEEEEEE
Q 010053 453 MIRVQC---PDINYPAAKLMDVLRDLEFHVHHASVS 485 (519)
Q Consensus 453 ~I~I~c---~~r~~~L~~Im~aLeel~LdV~~asvS 485 (519)
+|.|.+ ...++.+.+++++|.+.++.|.-.+.+
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 345544 244789999999999999999877643
No 146
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.87 E-value=1.4e+02 Score=25.22 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHhcCceEEEEEEEe---eCCeEE-----------EEEEEEc---CCCCCCHHHHHHHHHHHhh
Q 010053 463 YPAAKLMDVLRDLEFHVHHASVSS---VRETML-----------QDVVVRI---PEGLISEEVIRSAIFQRMQ 518 (519)
Q Consensus 463 ~~L~~Im~aLeel~LdV~~asvS~---~~d~v~-----------~ti~vkv---~~~~~s~e~L~~aL~~~l~ 518 (519)
..|.+|-++|++.|.+|+...--. .-|.++ +....++ .-.-.|+|++.+.|.+|||
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl~ 80 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERLQ 80 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhhC
Confidence 467899999999999999765332 111111 1111121 1123589999999999986
No 147
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.67 E-value=1.3e+02 Score=24.77 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 377 LADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 377 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
+..||+-|.-||.++++|+.+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999998765554
No 148
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.30 E-value=2.9e+02 Score=20.62 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=35.0
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 010053 453 MIRVQCP---DINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 517 (519)
Q Consensus 453 ~I~I~c~---~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~l 517 (519)
+|.|.+. ..++.+.+++++|.+.++.|.-.+.+..+ .-..|.+.-. ..+++.+.|++++
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~----~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED----DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH----HHHHHHHHHHHHh
Confidence 4555543 45789999999999999999766543322 1123444321 1344555666554
No 149
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=25.27 E-value=3.8e+02 Score=27.82 Aligned_cols=64 Identities=8% Similarity=0.097 Sum_probs=49.1
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
...|=+.-++++|.|.++|..|...|++.....+-.... .--|.|.+.++...- ...++.||.+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~-~~~v~~AL~e 258 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID-DPLVKEALEE 258 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC-cHhHHHHHHH
Confidence 344445556999999999999999999999998777665 556888898865543 4677777754
No 150
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=23.86 E-value=2.2e+02 Score=33.40 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=46.9
Q ss_pred ceEEEEEeCc-----EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC-CeEEEEEEEEcCC
Q 010053 441 MDVDVKIVGS-----EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR-ETMLQDVVVRIPE 501 (519)
Q Consensus 441 ~~V~V~i~g~-----ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~-d~v~~ti~vkv~~ 501 (519)
.-|.|.-... .+-|+|.-.+++|+|.+|+++|-+.+..|.++++...+ +...-.|.+++.+
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 3466655422 35688889999999999999999999999999988863 3555566677764
No 151
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=23.51 E-value=51 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=37.6
Q ss_pred cccCCCCchHHHHHHHHHhccCCCCceEEEEeecCCC---CCCCeeEEecccccCCCc
Q 010053 14 MPFCQETSPTLQQRLQFIVQNRPEWWVYSIFWQPLKD---VNGRLVLSWGDGYFRGSK 68 (519)
Q Consensus 14 ~~~~~~~~~~Lq~~L~~lv~~~~~~WsYAIFWq~s~~---~~g~~vL~WgDGy~~g~~ 68 (519)
+.+|++.-+.|++.|..++. .|.|..=|++..+ .+|...+.|++|--..+.
T Consensus 132 I~v~P~d~~~l~~~l~~~~~----~~~~~~~~~l~~D~~L~~G~c~vet~~G~vd~d~ 185 (199)
T PRK06032 132 VRVNDALVEAARERLERLAR----ESGFEGRLVVLADPDMAPGDCRLEWADGGVVRDR 185 (199)
T ss_pred EEECHHHHHHHHHHHHHHHH----hcCcCccEEEeeCCCCCCCCeEEEeCCCeEecCH
Confidence 55676555667777776664 6777788888777 458899999999877653
No 152
>PF14992 TMCO5: TMCO5 family
Probab=23.30 E-value=1.1e+02 Score=31.73 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 376 LLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 376 IL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
+..|++.||++||++++.++.+++.+-
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~~l 171 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEMLL 171 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999887654
No 153
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=23.25 E-value=2.4e+02 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=34.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeE
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETM 491 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v 491 (519)
.|.|--++++|-|..+..+|.+.|+.+...++.-.+++=
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 577888999999999999999999999999888888743
No 154
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=23.13 E-value=4.1e+02 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEE
Q 010053 460 DINYPAAKLMDVLRDLEFHVHHASV 484 (519)
Q Consensus 460 ~r~~~L~~Im~aLeel~LdV~~asv 484 (519)
..++.+.+|+++|.+.++.|-....
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4478999999999999999988864
No 155
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.09 E-value=2.3e+02 Score=21.38 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHhc-CceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 462 NYPAAKLMDVLRDL-EFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 462 ~~~L~~Im~aLeel-~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
++...+|..+|..+ |+.-+.++... ..+.+.......+.++|+.+|.++
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 45778999999999 66544444333 344555555557889999998863
No 156
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=22.57 E-value=3.5e+02 Score=29.93 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
..|-+..++++|.|.+||..|.+.|+.+.+..+-.... .--|.|.+.++... . +.++++|.
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~-~-~~v~~aL~ 78 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS-D-RKLEGVIE 78 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc-c-HHHHHHHH
Confidence 34445557789999999999999999999998776554 33467778776432 2 45555544
No 157
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.76 E-value=2.3e+02 Score=23.75 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=41.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhc-CceEEEEEEEeeCCeEEEEEEEEcCCC---CCCHHHHHHHHHHHhhC
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDL-EFHVHHASVSSVRETMLQDVVVRIPEG---LISEEVIRSAIFQRMQN 519 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel-~LdV~~asvS~~~d~v~~ti~vkv~~~---~~s~e~L~~aL~~~l~~ 519 (519)
+|+++..+...-...+++.|++- +++|+..---..-+.--....|-|++. .-|+|+|...|.++|++
T Consensus 4 iVefC~~Nl~~g~~~~~~~Le~~p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 4 IVEFCVSNLASGTDQVYEKLEKDPDIDVIEYGCLSYCGPCAKKPFALVNGEIVAAETAEELLEKIKEKIEE 74 (78)
T ss_pred eEEEcccCchhhhHHHHHHHhcCCCccEEEcChhhhCcCCCCCccEEECCEEEecCCHHHHHHHHHHHHhc
Confidence 57777666554456678888765 677765443333343333333445443 35799999999998864
No 158
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=1.6e+02 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 377 LADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 377 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
+..||+-|.-||-.|++|+.++..+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999988877554
No 159
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=21.26 E-value=4.3e+02 Score=21.06 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 343 HVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 343 h~~~ER~RR~kln~~f~~LrslvP~~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
++..|++=|+.....+.+| ..||..++.+|-.-|.+-..+++.|+.+++.+.
T Consensus 9 ~i~~E~ki~~Gae~m~~~~--------~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 9 KIDKELKIKEGAENMLQAY--------STDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666676666666666 346666888999999999999999999888877
No 160
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.26 E-value=4.8e+02 Score=21.61 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=41.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC---eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE---TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d---~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
++++.|.=|.++|-|.+.++.|-. +-+|..-+.-..++ .++-.|.++ +. ..++|.+.|.+
T Consensus 1 E~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~--~~--~~~~l~~~l~~ 63 (81)
T cd04907 1 ERLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVP--DA--DLDELKERLDA 63 (81)
T ss_pred CeEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeC--hH--HHHHHHHHHHH
Confidence 467889999999999999999943 67888877766554 344444433 22 45566666543
No 161
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.40 E-value=1.4e+02 Score=23.41 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010053 381 VAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 381 I~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
..||..|+.++..|+.+...|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4677778888887777777666
No 162
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=20.40 E-value=4.9e+02 Score=26.20 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCC--ChHHHHHHHHHhcCceEEEEEEEeeC--CeEEE--EEEEEcCCCCCCHHHHHHHHH
Q 010053 451 EAMIRVQCPDIN--YPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQ--DVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 451 ev~I~I~c~~r~--~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~--ti~vkv~~~~~s~e~L~~aL~ 514 (519)
...++|.|.... +....+++.|++.++.+.+.++.... +.+.. ++.++..+. ..-|++...|.
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~-~~le~iv~~L~ 210 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYR-KTRELIISRIG 210 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCch-hhHHHHHHHHh
Confidence 457888898765 46889999999999999999986553 33333 333333222 23455555443
No 163
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=20.28 E-value=1e+02 Score=25.90 Aligned_cols=64 Identities=25% Similarity=0.302 Sum_probs=37.9
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecC-----CceEeeccccccccCHHHHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTA-----CGVVELGSSDLIKEDWSLVQLA 206 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~-----~GVvELGSt~~i~E~~~~v~~v 206 (519)
.++.+.+ +.++++.++++ +....... .. ..+.+.++|||+. -|||.+++...-.=+..-++.+
T Consensus 49 ~l~~~~~-~~~~~~~~~~~-~~~~~~~~--~~--------~~~~~s~~~vPl~~~~~~~Gvl~~~~~~~~~~~~~d~~~l 116 (129)
T PF13492_consen 49 SLPEDDP-LIGRALETGEP-VSVPDIDE--RD--------FLGIRSLLVVPLRSRDRVIGVLCLDSREPEEFSDEDLQLL 116 (129)
T ss_dssp CEETTSH-HHHHHHHHTS--EEESTCCC---T--------TTTTCEEEEEEEEETTEEEEEEEEEECTTCG-SHHHHHHH
T ss_pred cCCCCcc-HHHHHHhhCCe-EEeccccc--cc--------CCCCCEEEEEEEeECCEEEEEEEEEECCCCCCCHHHHHHH
Confidence 3456777 88888888876 43322111 11 1567899999953 3899998887544344434433
Q ss_pred H
Q 010053 207 K 207 (519)
Q Consensus 207 k 207 (519)
+
T Consensus 117 ~ 117 (129)
T PF13492_consen 117 E 117 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=20.17 E-value=2.8e+02 Score=26.18 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=36.2
Q ss_pred HHHHHHHhc----CceEEEEEEEeeCCeE-EEEEE--EEcCCCCCCHHHHHHHHHHHhh
Q 010053 467 KLMDVLRDL----EFHVHHASVSSVRETM-LQDVV--VRIPEGLISEEVIRSAIFQRMQ 518 (519)
Q Consensus 467 ~Im~aLeel----~LdV~~asvS~~~d~v-~~ti~--vkv~~~~~s~e~L~~aL~~~l~ 518 (519)
.|-++++++ +.++.++-++..+..+ ..... +.++++.+++++++.++..+.+
T Consensus 51 ~I~~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~~~~~i~i~~~~i~~~di~~~~~~a~~ 109 (187)
T smart00842 51 AIREAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAIPDKEITQEDIDRVLEAAKA 109 (187)
T ss_pred HHHHHHHHHHHHhCCcccEEEEEEcCCceEEEeeEEEEECCCCEECHHHHHHHHHHhhc
Confidence 356666666 9999888877766644 23332 4556667999999999877643
Done!