Query 010053
Match_columns 519
No_of_seqs 282 out of 1310
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.6E-15 5.4E-20 126.1 6.7 65 340-404 7-72 (82)
2 1hlo_A Protein (transcription 99.5 3E-14 1E-18 117.7 6.0 65 339-403 12-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 3.5E-14 1.2E-18 118.1 6.4 65 340-404 3-69 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.5 6.1E-14 2.1E-18 118.0 7.0 65 339-403 6-73 (88)
5 4h10_B Circadian locomoter out 99.4 6.9E-14 2.4E-18 112.8 5.3 57 339-395 8-65 (71)
6 1an4_A Protein (upstream stimu 99.4 5.7E-14 1.9E-18 111.6 2.9 53 339-391 5-63 (65)
7 1nlw_A MAD protein, MAX dimeri 99.4 4.4E-13 1.5E-17 110.8 7.7 65 340-404 2-69 (80)
8 4ati_A MITF, microphthalmia-as 99.4 3.7E-13 1.3E-17 119.1 7.6 60 340-399 28-91 (118)
9 1a0a_A BHLH, protein (phosphat 99.4 8E-14 2.7E-18 110.2 1.6 52 340-391 3-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.3 2.9E-13 1E-17 109.9 2.1 50 340-389 10-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 1.4E-12 4.7E-17 106.8 3.6 58 338-395 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 3.1E-10 1E-14 90.9 3.7 53 339-391 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 98.9 5.8E-10 2E-14 87.2 4.5 53 340-392 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.7 5.5E-09 1.9E-13 108.0 5.6 51 340-390 13-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 3.1E-08 1E-12 103.5 4.3 51 340-390 14-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 4.4E-08 1.5E-12 77.8 0.5 45 345-389 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2.3E-06 7.9E-11 70.5 6.9 50 351-400 4-57 (83)
18 4aya_A DNA-binding protein inh 97.6 7.1E-05 2.4E-09 63.5 6.0 48 346-393 32-82 (97)
19 1zpv_A ACT domain protein; str 96.7 0.015 5.3E-07 47.2 11.1 66 450-516 4-69 (91)
20 1u8s_A Glycine cleavage system 95.3 0.054 1.8E-06 50.4 8.7 64 451-516 6-69 (192)
21 1f5m_A GAF; CGMP binding, sign 94.9 0.012 4E-07 54.8 2.9 73 131-210 92-173 (180)
22 2nyi_A Unknown protein; protei 94.7 0.14 4.9E-06 48.0 9.8 62 451-514 5-70 (195)
23 2nyi_A Unknown protein; protei 93.9 0.12 4E-06 48.6 7.3 65 450-516 92-162 (195)
24 3dba_A CONE CGMP-specific 3',5 93.6 0.022 7.5E-07 51.9 1.6 76 132-210 82-167 (180)
25 1u8s_A Glycine cleavage system 93.5 0.46 1.6E-05 44.0 10.6 66 450-516 92-165 (192)
26 2vjw_A GAF-B, GAF family prote 93.4 0.052 1.8E-06 48.2 3.7 48 132-193 55-107 (149)
27 1vhm_A Protein YEBR; structura 93.2 0.041 1.4E-06 52.0 2.8 74 131-211 87-168 (195)
28 2ko1_A CTR148A, GTP pyrophosph 93.1 0.6 2.1E-05 37.0 9.4 50 451-500 5-54 (88)
29 2e4s_A CAMP and CAMP-inhibited 92.5 0.058 2E-06 47.9 2.7 76 131-209 84-169 (189)
30 3k2n_A Sigma-54-dependent tran 92.4 0.87 3E-05 39.6 10.3 75 132-208 72-158 (177)
31 3mmh_A FRMSR, methionine-R-sul 92.3 0.05 1.7E-06 50.1 2.0 72 132-210 77-156 (167)
32 3e0y_A Conserved domain protei 92.0 0.098 3.3E-06 45.7 3.6 75 132-209 77-159 (181)
33 3trc_A Phosphoenolpyruvate-pro 90.9 0.25 8.7E-06 42.6 5.1 74 132-208 72-153 (171)
34 3p96_A Phosphoserine phosphata 90.8 0.41 1.4E-05 49.4 7.3 66 450-515 11-76 (415)
35 3obi_A Formyltetrahydrofolate 90.8 1 3.6E-05 45.0 10.0 66 450-515 5-72 (288)
36 3o1l_A Formyltetrahydrofolate 90.6 1.2 4.2E-05 44.8 10.4 66 450-515 21-88 (302)
37 3hcy_A Putative two-component 90.4 0.35 1.2E-05 41.4 5.5 59 135-195 52-115 (151)
38 3rfb_A Putative uncharacterize 90.1 0.17 5.8E-06 47.0 3.2 74 132-212 77-158 (171)
39 3ksh_A Putative uncharacterize 90.0 0.13 4.6E-06 47.1 2.5 73 131-210 75-155 (160)
40 3n0v_A Formyltetrahydrofolate 89.5 1.4 4.9E-05 44.0 9.7 65 450-515 7-73 (286)
41 2w3g_A DOSS, two component sen 88.8 0.21 7.1E-06 42.2 2.7 73 132-208 56-137 (153)
42 3ci6_A Phosphoenolpyruvate-pro 88.2 0.22 7.5E-06 42.5 2.4 74 132-208 74-155 (171)
43 3lou_A Formyltetrahydrofolate 87.7 2 6.9E-05 43.0 9.4 67 449-515 8-78 (292)
44 2qyb_A Membrane protein, putat 86.8 0.56 1.9E-05 41.3 4.3 73 135-210 70-152 (181)
45 3oov_A Methyl-accepting chemot 86.5 0.26 8.8E-06 42.5 1.9 73 136-209 72-155 (169)
46 1ykd_A Adenylate cyclase; GAF 85.7 0.43 1.5E-05 48.2 3.4 62 132-194 262-331 (398)
47 2zmf_A CAMP and CAMP-inhibited 83.1 0.54 1.9E-05 41.2 2.4 76 132-209 85-169 (189)
48 3ibj_A CGMP-dependent 3',5'-cy 80.6 0.87 3E-05 50.4 3.4 77 132-211 245-332 (691)
49 1mc0_A 3',5'-cyclic nucleotide 78.3 1.5 5.3E-05 43.3 4.1 76 132-210 245-331 (368)
50 3nrb_A Formyltetrahydrofolate 77.8 9.2 0.00032 38.1 9.6 63 450-514 6-70 (287)
51 2f1f_A Acetolactate synthase i 76.7 2.9 9.8E-05 38.4 5.1 62 452-515 4-67 (164)
52 3o5y_A Sensor protein; GAF dom 76.1 2 6.7E-05 38.8 3.8 76 132-210 54-137 (165)
53 1mc0_A 3',5'-cyclic nucleotide 76.1 0.97 3.3E-05 44.8 1.9 74 132-210 75-160 (368)
54 2jhe_A Transcription regulator 74.3 5.1 0.00017 35.4 6.1 35 453-487 2-36 (190)
55 1ykd_A Adenylate cyclase; GAF 74.0 1.2 4.1E-05 44.8 2.0 61 132-193 75-143 (398)
56 1y7p_A Hypothetical protein AF 73.1 7.7 0.00026 37.4 7.2 60 451-514 4-68 (223)
57 2pc6_A Probable acetolactate s 71.1 3.4 0.00012 38.0 4.1 62 452-515 5-68 (165)
58 2k2n_A Sensor protein, SYB-CPH 70.3 5.5 0.00019 35.0 5.3 53 141-194 85-142 (172)
59 2fgc_A Acetolactate synthase, 70.1 6.9 0.00024 36.9 6.0 63 452-516 30-94 (193)
60 3ibj_A CGMP-dependent 3',5'-cy 69.5 3.5 0.00012 45.5 4.6 71 131-206 75-156 (691)
61 3p01_A Two-component response 68.6 1.5 5.2E-05 39.0 1.1 70 136-208 94-171 (184)
62 2lb5_A Sensor histidine kinase 66.1 7.2 0.00025 35.2 5.3 68 142-210 116-191 (208)
63 2wt7_A Proto-oncogene protein 64.3 17 0.00058 27.8 6.2 44 347-403 1-44 (63)
64 3bjc_A CGMP-specific 3',5'-cyc 63.5 1.5 5.1E-05 50.1 0.0 77 132-211 225-314 (878)
65 3bjc_A CGMP-specific 3',5'-cyc 56.5 2.3 7.9E-05 48.5 0.0 60 132-194 407-477 (878)
66 2f06_A Conserved hypothetical 54.1 56 0.0019 28.1 8.7 57 453-515 74-130 (144)
67 2oqq_A Transcription factor HY 48.5 18 0.00063 25.7 3.6 23 382-404 3-25 (42)
68 3he4_B Synzip5; heterodimeric 45.0 35 0.0012 23.9 4.5 26 377-402 5-30 (46)
69 2f06_A Conserved hypothetical 41.0 1.1E+02 0.0037 26.2 8.4 37 453-489 8-44 (144)
70 1zme_C Proline utilization tra 36.6 30 0.001 26.1 3.6 21 382-402 44-64 (70)
71 2l5g_A GPS2 protein, G protein 36.4 71 0.0024 22.1 4.9 31 371-401 4-34 (38)
72 2qmw_A PDT, prephenate dehydra 35.0 75 0.0026 31.2 7.0 63 451-515 186-252 (267)
73 1dh3_A Transcription factor CR 33.1 40 0.0014 25.1 3.6 23 382-404 22-44 (55)
74 2qmx_A Prephenate dehydratase; 32.6 1E+02 0.0034 30.5 7.5 62 453-515 202-264 (283)
75 1uii_A Geminin; human, DNA rep 27.9 1.2E+02 0.0042 24.6 5.8 26 377-402 41-66 (83)
76 1gd2_E Transcription factor PA 27.7 53 0.0018 25.9 3.6 22 381-402 28-49 (70)
77 1rwu_A Hypothetical UPF0250 pr 27.5 2.2E+02 0.0075 24.1 7.8 63 450-518 35-100 (109)
78 2dbs_A Hypothetical protein TT 26.8 48 0.0017 26.6 3.2 34 14-47 35-71 (90)
79 2re1_A Aspartokinase, alpha an 26.0 1.1E+02 0.0039 27.1 6.1 41 445-485 19-60 (167)
80 3luy_A Probable chorismate mut 25.7 2.8E+02 0.0095 27.9 9.5 55 460-515 217-272 (329)
81 2re1_A Aspartokinase, alpha an 25.3 2.1E+02 0.0071 25.3 7.8 39 445-483 97-138 (167)
82 3mwb_A Prephenate dehydratase; 25.1 1.5E+02 0.0051 29.7 7.3 64 451-515 201-266 (313)
83 2dtj_A Aspartokinase; protein- 25.0 1.7E+02 0.0059 26.2 7.2 41 445-485 9-50 (178)
84 2er8_A Regulatory protein Leu3 24.8 33 0.0011 26.1 1.9 21 382-402 49-69 (72)
85 2kpp_A LIN0431 protein; soluti 24.7 65 0.0022 27.6 4.0 45 142-190 43-88 (114)
86 3ld7_A LIN0431 protein; DUF131 23.8 51 0.0017 27.6 3.0 47 132-182 34-81 (101)
87 2jee_A YIIU; FTSZ, septum, coi 23.7 94 0.0032 25.2 4.5 26 377-402 15-40 (81)
88 3a98_B Engulfment and cell mot 22.9 47 0.0016 31.3 3.0 32 24-61 25-66 (203)
89 2dt9_A Aspartokinase; protein- 22.7 1.3E+02 0.0043 26.7 5.7 54 445-498 10-67 (167)
90 2dt9_A Aspartokinase; protein- 22.0 1.8E+02 0.006 25.7 6.6 40 444-483 88-130 (167)
91 2dgc_A Protein (GCN4); basic d 20.4 91 0.0031 23.8 3.6 24 380-403 28-51 (63)
92 1kd8_B GABH BLL, GCN4 acid bas 20.3 99 0.0034 21.2 3.2 19 384-402 3-21 (36)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=1.6e-15 Score=126.07 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=61.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPNV-SKMDKASLLADAVAYIKELRAKVDELEAKLREQARK 404 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~-~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~~ 404 (519)
+.+|+.+||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+.+.|+..
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999996 899999999999999999999999999999988843
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=3e-14 Score=117.73 Aligned_cols=65 Identities=29% Similarity=0.517 Sum_probs=60.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPNV--SKMDKASLLADAVAYIKELRAKVDELEAKLREQAR 403 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~~--~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~ 403 (519)
.+.+|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.|++
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999974 69999999999999999999999999999998874
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.48 E-value=3.5e-14 Score=118.12 Aligned_cols=65 Identities=29% Similarity=0.498 Sum_probs=60.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPN--VSKMDKASLLADAVAYIKELRAKVDELEAKLREQARK 404 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~--~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~~ 404 (519)
+.+|+.+||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+.++++|+.+++.+...
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999997 5899999999999999999999999999999888743
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=6.1e-14 Score=118.03 Aligned_cols=65 Identities=32% Similarity=0.472 Sum_probs=59.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPNV---SKMDKASLLADAVAYIKELRAKVDELEAKLREQAR 403 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~~---~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~ 403 (519)
.+..|+.+||+||++||+.|..|+.+||.. .|++|++||.+||+||++|+.+.+.|..+++.+..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999974 69999999999999999999999998888777764
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.44 E-value=6.9e-14 Score=112.78 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=52.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPN-VSKMDKASLLADAVAYIKELRAKVDELE 395 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~-~~k~dKaSIL~~AI~YIk~Lq~~v~~Le 395 (519)
.+.+|+++||+||++||++|..|++|||. ..|+||++||..||+||+.||.++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35689999999999999999999999997 5699999999999999999999987664
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=5.7e-14 Score=111.56 Aligned_cols=53 Identities=34% Similarity=0.584 Sum_probs=48.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCCC------CCchhhHHHHHHHHHHHHHHHH
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPNVS------KMDKASLLADAVAYIKELRAKV 391 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~~~------k~dKaSIL~~AI~YIk~Lq~~v 391 (519)
.+.+|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999854 7899999999999999999764
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=4.4e-13 Score=110.80 Aligned_cols=65 Identities=28% Similarity=0.339 Sum_probs=59.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPN---VSKMDKASLLADAVAYIKELRAKVDELEAKLREQARK 404 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~---~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~~ 404 (519)
+..|+..||+||..||+.|..|+++||. ..|..|++||..|++||+.|+.+.+.|..+++.+.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999996 4688899999999999999999999999999888743
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.40 E-value=3.7e-13 Score=119.15 Aligned_cols=60 Identities=27% Similarity=0.442 Sum_probs=52.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCCC----CCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPNVS----KMDKASLLADAVAYIKELRAKVDELEAKLR 399 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~~----k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~ 399 (519)
+.+|+.+||+||++||++|..|++|||.+. |++|++||.+||+||++||.+++.|+....
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999864 678999999999999999999999987543
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.37 E-value=8e-14 Score=110.19 Aligned_cols=52 Identities=31% Similarity=0.428 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC-------CCCchhhHHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPNV-------SKMDKASLLADAVAYIKELRAKV 391 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~-------~k~dKaSIL~~AI~YIk~Lq~~v 391 (519)
+.+|+++||+||++||..|..|++|||+. .|.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999963 56779999999999999999765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.32 E-value=2.9e-13 Score=109.89 Aligned_cols=50 Identities=36% Similarity=0.529 Sum_probs=46.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC----CCCchhhHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPNV----SKMDKASLLADAVAYIKELRA 389 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~~----~k~dKaSIL~~AI~YIk~Lq~ 389 (519)
+.+|+.+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999975 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=1.4e-12 Score=106.77 Aligned_cols=58 Identities=29% Similarity=0.366 Sum_probs=48.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCC---CCCC-chhhHHHHHHHHHHHHHHHHHHHH
Q 010053 338 ESPLNHVEAERQRRERLNHRFYALRSVVPN---VSKM-DKASLLADAVAYIKELRAKVDELE 395 (519)
Q Consensus 338 ~~~~~h~~~ER~RR~kln~~f~~LrslvP~---~~k~-dKaSIL~~AI~YIk~Lq~~v~~Le 395 (519)
+.+.+|+..||+||.+||+.|..||.+||. ..|. .|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999995 4455 688899999999999999999875
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.95 E-value=3.1e-10 Score=90.89 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=48.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC--CCCCchhhHHHHHHHHHHHHHHHH
Q 010053 339 SPLNHVEAERQRRERLNHRFYALRSVVPN--VSKMDKASLLADAVAYIKELRAKV 391 (519)
Q Consensus 339 ~~~~h~~~ER~RR~kln~~f~~LrslvP~--~~k~dKaSIL~~AI~YIk~Lq~~v 391 (519)
.+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999997 468899999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.93 E-value=5.8e-10 Score=87.15 Aligned_cols=53 Identities=32% Similarity=0.357 Sum_probs=47.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVPN---VSKMDKASLLADAVAYIKELRAKVD 392 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP~---~~k~dKaSIL~~AI~YIk~Lq~~v~ 392 (519)
+..|+..||+|+..||+.|..||.+||. ..|..|..+|..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999997 4588999999999999999998654
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=5.5e-09 Score=107.95 Aligned_cols=51 Identities=25% Similarity=0.556 Sum_probs=43.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCC-CCCCCchhhHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVP-NVSKMDKASLLADAVAYIKELRAK 390 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP-~~~k~dKaSIL~~AI~YIk~Lq~~ 390 (519)
+.+|+.+||+||++||..|..|++||| +..|+||++||..||.||+.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 456999999999999999999999999 678999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.55 E-value=3.1e-08 Score=103.53 Aligned_cols=51 Identities=35% Similarity=0.492 Sum_probs=47.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCC----CCCCCchhhHHHHHHHHHHHHHHH
Q 010053 340 PLNHVEAERQRRERLNHRFYALRSVVP----NVSKMDKASLLADAVAYIKELRAK 390 (519)
Q Consensus 340 ~~~h~~~ER~RR~kln~~f~~LrslvP----~~~k~dKaSIL~~AI~YIk~Lq~~ 390 (519)
+.+|+.+||+||++||+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 467999999999999999999999999 578999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.39 E-value=4.4e-08 Score=77.79 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHHHHHHH
Q 010053 345 EAERQRRERLNHRFYALRSVVPN---VSKMDKASLLADAVAYIKELRA 389 (519)
Q Consensus 345 ~~ER~RR~kln~~f~~LrslvP~---~~k~dKaSIL~~AI~YIk~Lq~ 389 (519)
..||+|+..||+-|..||.+||. ..|..|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 45899999999999999999997 4688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.22 E-value=2.3e-06 Score=70.53 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhccCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 351 RERLNHRFYALRSVVPNV----SKMDKASLLADAVAYIKELRAKVDELEAKLRE 400 (519)
Q Consensus 351 R~kln~~f~~LrslvP~~----~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~ 400 (519)
|..||+++..|..|||.. .|..|++||..|++||++||+.++.+..+...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999963 57899999999999999999887777654443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.63 E-value=7.1e-05 Score=63.51 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCC---CCCCchhhHHHHHHHHHHHHHHHHHH
Q 010053 346 AERQRRERLNHRFYALRSVVPN---VSKMDKASLLADAVAYIKELRAKVDE 393 (519)
Q Consensus 346 ~ER~RR~kln~~f~~LrslvP~---~~k~dKaSIL~~AI~YIk~Lq~~v~~ 393 (519)
.||.|=..||+-|..||.+||. ..|..|..+|.-||+||..|+.-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888999999999999996 45788999999999999999986653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.74 E-value=0.015 Score=47.21 Aligned_cols=66 Identities=18% Similarity=0.110 Sum_probs=55.8
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
..+.|.|.|++++|++.+|..+|.+.|..+.+.+.....+...-.+.+.+++ ....++|.++|.+.
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE-KQDFTYLRNEFEAF 69 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-CCCHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC-CCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988888777777777765 34678888888753
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.31 E-value=0.054 Score=50.43 Aligned_cols=64 Identities=3% Similarity=0.003 Sum_probs=53.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
.+.|.|.|++++|++.+|..+|.+.|+.|+.++..+..+.++-.+.+..+. ...++|+++|.+.
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTLPLL 69 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHHHHH
Confidence 578999999999999999999999999999999998888666677776543 2466777777654
No 21
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=94.94 E-value=0.012 Score=54.76 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=54.6
Q ss_pred eeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC------ceEeeccccc---cccCHH
Q 010053 131 RSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC------GVVELGSSDL---IKEDWS 201 (519)
Q Consensus 131 ~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~------GVvELGSt~~---i~E~~~ 201 (519)
..|+.|+| +.|+|+.+|+++.+.+...-+. |.+...+++.++|||+.. |||++.+.+. -.+|..
T Consensus 92 ~~i~~g~G-i~G~aa~~g~~v~v~Dv~~dp~------~~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~ 164 (180)
T 1f5m_A 92 QMIQFGKG-VCGTAASTKETQIVPDVNKYPG------HIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKE 164 (180)
T ss_dssp SEEETTSH-HHHHHHHHTSCEEESCGGGSTT------CCCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHH
T ss_pred eeecCCCc-chhhhhhcCCEEEeCCcccCcc------ccccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHH
Confidence 35889999 9999999999999988654332 224457899999999655 9999998754 234666
Q ss_pred HHHHHHHHc
Q 010053 202 LVQLAKSLF 210 (519)
Q Consensus 202 ~v~~vk~~f 210 (519)
+++.+-...
T Consensus 165 ~L~~la~~~ 173 (180)
T 1f5m_A 165 FLEKLAKLI 173 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.69 E-value=0.14 Score=47.96 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=49.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCC----HHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLIS----EEVIRSAIF 514 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s----~e~L~~aL~ 514 (519)
.+.|.|.|+.++|++++|..+|.++|+.|+.++..+..+.++-.+.+..+.. + .++|+++|.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~--~~~~~~~~l~~~L~ 70 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK--DGKLIQSALESALP 70 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS--SSHHHHHHHHHHST
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc--cchhHHHHHHHHHH
Confidence 4789999999999999999999999999999999988885544666665432 3 455665554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.91 E-value=0.12 Score=48.60 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=51.8
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC------CeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR------ETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~------d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
...+|.|.|++++|++.+|-..|-++|+.+.+++..+.. ++++-.+.+.+++. .. ++|+++|...
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~-~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFP-LY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGG-GH-HHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCC-cc-HHHHHHHHHH
Confidence 357899999999999999999999999999999999876 45555555555432 34 7888888754
No 24
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=93.58 E-value=0.022 Score=51.88 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=52.7
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhh-hhcCccEEEEEecCC-----ceEeeccccc----cccCHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEA-RMHGIQTLVCVSTAC-----GVVELGSSDL----IKEDWS 201 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a-~~aGiqTivciP~~~-----GVvELGSt~~----i~E~~~ 201 (519)
.++.|+| +.|+++.+|+++.+.+...-+ .|.+.... ....++.++|||+.. |||+|.+... -.+|..
T Consensus 82 ~~~~~~g-i~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~ 158 (180)
T 3dba_A 82 VFPLDIG-IAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEE 158 (180)
T ss_dssp EECTTSS-HHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHH
T ss_pred eeeCCCC-HHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHH
Confidence 5789999 999999999999998765432 22222111 124579999999543 8999987653 235666
Q ss_pred HHHHHHHHc
Q 010053 202 LVQLAKSLF 210 (519)
Q Consensus 202 ~v~~vk~~f 210 (519)
+++.+-+..
T Consensus 159 lL~~lA~~a 167 (180)
T 3dba_A 159 VFKKYLNFI 167 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.47 E-value=0.46 Score=44.01 Aligned_cols=66 Identities=8% Similarity=0.026 Sum_probs=52.5
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--------CeEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--------ETMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--------d~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
....|.|.|++++|++.+|.++|.+.|++|..+...+.+ +.++-.+.+..++ ..+.++|+++|...
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHH
Confidence 356899999999999999999999999999999988764 2444455555554 44788999988754
No 26
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=93.37 E-value=0.052 Score=48.25 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=40.4
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeeccc
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSS 193 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt 193 (519)
.|+.|+| +.|+++.+|+++++.+....+ |++.++|||+.. |||.++..
T Consensus 55 ~~~~~~g-~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQDN-AIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESSSS-HHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCC-HHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 5788999 999999999999998865322 789999999543 89999886
No 27
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=93.16 E-value=0.041 Score=52.03 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=54.8
Q ss_pred eeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecC-C----ceEeeccccc---cccCHHH
Q 010053 131 RSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTA-C----GVVELGSSDL---IKEDWSL 202 (519)
Q Consensus 131 ~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~-~----GVvELGSt~~---i~E~~~~ 202 (519)
..|+.|+| +.|+|+.+|+++.+.+....+. +.+...+.+.++|||+. + |||++.+.+. -.+|..+
T Consensus 87 ~~i~~GeG-i~G~aa~tg~~i~V~Dv~~~p~------~~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~ 159 (195)
T 1vhm_A 87 VRIPVGRG-VCGTAVARNQVQRIEDVHVFDG------HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQG 159 (195)
T ss_dssp SEEETTSH-HHHHHHHHTSCEEESCTTTCTT------CCCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHH
T ss_pred eEecCCCC-hHHHHHhcCCEEEECCcccCcc------hhhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHH
Confidence 35889999 9999999999999998765322 22334578999999953 2 8999999764 2346677
Q ss_pred HHHHHHHcC
Q 010053 203 VQLAKSLFG 211 (519)
Q Consensus 203 v~~vk~~f~ 211 (519)
++.+-....
T Consensus 160 L~~lA~~ia 168 (195)
T 1vhm_A 160 LRQLVAQLE 168 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
No 28
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=93.08 E-value=0.6 Score=36.97 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcC
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIP 500 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~ 500 (519)
.+.|+|.+++++|.|.+|..+|.+.|+.+.+++....++.....+.+.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 46789999999999999999999999999999998877633445555554
No 29
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=92.52 E-value=0.058 Score=47.87 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=52.1
Q ss_pred eeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhh-hhhhcCccEEEEEecCC-----ceEeecccccc----ccCH
Q 010053 131 RSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVK-EARMHGIQTLVCVSTAC-----GVVELGSSDLI----KEDW 200 (519)
Q Consensus 131 ~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~-~a~~aGiqTivciP~~~-----GVvELGSt~~i----~E~~ 200 (519)
..|+.|.| +.|+++.+|+++++.+....+ .|.+.. .....+++.++|||+.. |||.+++...- .+|.
T Consensus 84 ~~~~~~~~-~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~ 160 (189)
T 2e4s_A 84 IRFSIEKG-IAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDE 160 (189)
T ss_dssp CEEETTSH-HHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHH
T ss_pred eEeeCCCc-HHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHH
Confidence 36889999 999999999999998754432 222211 11237899999999532 89999987643 3455
Q ss_pred HHHHHHHHH
Q 010053 201 SLVQLAKSL 209 (519)
Q Consensus 201 ~~v~~vk~~ 209 (519)
.+++.+-..
T Consensus 161 ~ll~~la~~ 169 (189)
T 2e4s_A 161 NNFKMFAVF 169 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566555443
No 30
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=92.39 E-value=0.87 Score=39.65 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=48.3
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCC-cCccchh-hhh--hhhhcCccEEEEEecCC-----ceEeeccccccc---cC
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHE-LQLYECE-RVK--EARMHGIQTLVCVSTAC-----GVVELGSSDLIK---ED 199 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~-~~~~~~~-r~~--~a~~aGiqTivciP~~~-----GVvELGSt~~i~---E~ 199 (519)
.++.+.| +.|+++.+++++.+ +... .....+. +.+ .....|++.++|||+.. |||.+++...-. ++
T Consensus 72 ~~~~~~~-~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d 149 (177)
T 3k2n_A 72 TRSIAGT-WLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGD 149 (177)
T ss_dssp EEECTTS-GGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHH
T ss_pred cCCcccc-HHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHH
Confidence 4677889 99999999999998 4433 2222222 111 23457999999999533 899998865432 34
Q ss_pred HHHHHHHHH
Q 010053 200 WSLVQLAKS 208 (519)
Q Consensus 200 ~~~v~~vk~ 208 (519)
..+++.+-.
T Consensus 150 ~~ll~~lA~ 158 (177)
T 3k2n_A 150 KSLLSGVSS 158 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445544433
No 31
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=92.28 E-value=0.05 Score=50.12 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=53.3
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccccc---ccCHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLI---KEDWSLV 203 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i---~E~~~~v 203 (519)
.|+.|+| +.|+|+.+|+++.+.+....+.+ ++...+++..+|||+.. |||++.|.+.- .+|..++
T Consensus 77 ~i~~geG-i~G~v~~~g~~~~v~Dv~~~p~~------~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L 149 (167)
T 3mmh_A 77 RIPFGRG-VCGQAWAKGGTVVVGDVDAHPDH------IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYL 149 (167)
T ss_dssp EEETTSH-HHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred EeccCCC-hHHHHHhCCcEEEECCcccCcch------hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 6899999 99999999999999987653322 23346789999999532 89999986532 3466677
Q ss_pred HHHHHHc
Q 010053 204 QLAKSLF 210 (519)
Q Consensus 204 ~~vk~~f 210 (519)
+.+-...
T Consensus 150 ~~lA~~l 156 (167)
T 3mmh_A 150 GELAKIL 156 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 32
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=92.04 E-value=0.098 Score=45.66 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=48.4
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccccc---ccCHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLI---KEDWSLV 203 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i---~E~~~~v 203 (519)
.++.|+| +.|+++.+|+++++.+....+. |.........|++.++|||+.. |||.+++.+.- .++..++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l 153 (181)
T 3e0y_A 77 RIKIGDG-ITGSVARDGQYISLSRASQDPR--YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFV 153 (181)
T ss_dssp EEETTTS-SHHHHHHHCCCEEEEEECCCCC--C---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHH
T ss_pred cccCCCC-eeeehhhcCCeEEecCcccCcc--ccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHH
Confidence 5788999 9999999999999987554322 2111122346899999999533 89999988642 2344555
Q ss_pred HHHHHH
Q 010053 204 QLAKSL 209 (519)
Q Consensus 204 ~~vk~~ 209 (519)
+.+-..
T Consensus 154 ~~la~~ 159 (181)
T 3e0y_A 154 SIIANL 159 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 33
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=90.95 E-value=0.25 Score=42.61 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=49.5
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccccc---ccCHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLI---KEDWSLV 203 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i---~E~~~~v 203 (519)
.++.|+| +.|+++.+++++++.+....+.... + ......|++.++|||+.. |||.+++.+.- .++..++
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~-~-~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l 148 (171)
T 3trc_A 72 RLKFGEG-LIGLVGEREEPINLADAPLHPAYKH-R-PELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFC 148 (171)
T ss_dssp EEETTCH-HHHHHHHHTSCEEESCGGGSTTCCC-C-GGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHH
T ss_pred eecCCCC-hhhHHHhcCCeEEeCCCCCCCcccc-c-ccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHH
Confidence 5788999 9999999999999976544221111 1 112347899999999533 89999987542 2344455
Q ss_pred HHHHH
Q 010053 204 QLAKS 208 (519)
Q Consensus 204 ~~vk~ 208 (519)
+.+-.
T Consensus 149 ~~la~ 153 (171)
T 3trc_A 149 VTLAI 153 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 34
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.78 E-value=0.41 Score=49.43 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=54.9
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..++|.|.|++|+|+...|...|-++|..+++++-....+.++-.+.+.+++...+.++|+.+|..
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 76 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEA 76 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999977666666665443345788888764
No 35
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=90.77 E-value=1 Score=45.00 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=52.9
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe--eCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS--VRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~--~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..++|.|.|++++|+..+|-..|-++|+.+.+++..+ ..+.++-.+.+.+++...+.++|++++..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~ 72 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV 72 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHH
Confidence 4578999999999999999999999999999998753 34555555556666655678999988853
No 36
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=90.58 E-value=1.2 Score=44.81 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=53.2
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee--CCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV--RETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~--~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..++|.|.|++++|+...|-..|-+.|+.+++++.... .+.++-.+.+.+++...+.++|++++..
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP 88 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence 34789999999999999999999999999999998865 4555545556665545678999988853
No 37
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=90.44 E-value=0.35 Score=41.36 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=38.6
Q ss_pred cCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeeccccc
Q 010053 135 IGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDL 195 (519)
Q Consensus 135 ~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~ 195 (519)
.|.| ..|+++.+|+++++.+....+.....+. .+...|++.++|||+.. |||.+.+...
T Consensus 52 ~~~~-~~~~~~~~~~~~~i~d~~~~~~~~~~~~-~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~ 115 (151)
T 3hcy_A 52 DGHS-PWITGANEPEPIFVENVDDAEFSRELKE-SIVGEGIAALGFFPLVTEGRLIGKFMTYYDRP 115 (151)
T ss_dssp CBCC-SCC---CCCCCEEESCGGGSCCCHHHHH-HHHHHTCCEEEEEEEESSSSEEEEEEEEESSC
T ss_pred cCCC-chhhhhhcCCcEEEeChhhCcccchhHH-HHHhcCchheEEeceEECCEEEEEEEEecCCC
Confidence 3677 8899999999999987654332211122 24457999999999533 7888887654
No 38
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=90.08 E-value=0.17 Score=46.99 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=55.8
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccccc---ccCHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLI---KEDWSLV 203 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i---~E~~~~v 203 (519)
.++.|+| +.|+|+.+|+++-+.+....+.+ .+...+.+..+|||+.. |||.+.|...- .+|..++
T Consensus 77 ri~~GeG-v~G~va~tg~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 149 (171)
T 3rfb_A 77 RIALGKG-VCGEAAHFQETVIVGDVTTYLNY------ISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYL 149 (171)
T ss_dssp EEETTSH-HHHHHHHTTSCEEESCTTSCSSC------CCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred EeeCCcC-HHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 6899999 99999999999999998765433 22234578999999532 89999985432 4577788
Q ss_pred HHHHHHcCC
Q 010053 204 QLAKSLFGP 212 (519)
Q Consensus 204 ~~vk~~f~~ 212 (519)
+.+-.....
T Consensus 150 ~~lA~~la~ 158 (171)
T 3rfb_A 150 EQFVAILLE 158 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776643
No 39
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=90.04 E-value=0.13 Score=47.09 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=53.5
Q ss_pred eeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecC-C----ceEeecccccc---ccCHHH
Q 010053 131 RSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTA-C----GVVELGSSDLI---KEDWSL 202 (519)
Q Consensus 131 ~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~-~----GVvELGSt~~i---~E~~~~ 202 (519)
..++.|+| +.|+|+.+|+++-+.+....+.+ .+...+.+..+|||+. + |||.+.|...- .+|..+
T Consensus 75 ~ri~~GeG-v~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~ 147 (160)
T 3ksh_A 75 VHIPIGKG-VCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEH 147 (160)
T ss_dssp SEEETTSH-HHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHH
T ss_pred EEeeCCCC-HHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHH
Confidence 36899999 99999999999999987654332 2334567899999952 2 89999986432 356667
Q ss_pred HHHHHHHc
Q 010053 203 VQLAKSLF 210 (519)
Q Consensus 203 v~~vk~~f 210 (519)
++.+-...
T Consensus 148 L~~lA~~l 155 (160)
T 3ksh_A 148 LEAIVKII 155 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665544
No 40
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=89.47 E-value=1.4 Score=43.96 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe--eCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS--VRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~--~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
..+.|.|.|++++|+..+|-..|-+.|+.+.+++..+ ..+.++-.+.+..++ ..+.++|++++..
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAE 73 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHH
Confidence 3578999999999999999999999999999998774 345554455566554 4678899988864
No 41
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=88.77 E-value=0.21 Score=42.18 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=48.6
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeeccccc----cccCHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDL----IKEDWSL 202 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~----i~E~~~~ 202 (519)
.++.+.| +.|+++.+++++++.+....+... . +.....|++.++|||+.. |||.+++... -.++..+
T Consensus 56 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~--~-~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~ 131 (153)
T 2w3g_A 56 HLPKGLG-VIGLLIEDPKPLRLDDVSAHPASI--G-FPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVL 131 (153)
T ss_dssp SCCCSCT-HHHHHHHSCSCEEESSGGGSTTCC--C-CCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHH
T ss_pred cCCCCCC-HHHHHHhcCCcEEecCcccCchhc--C-CCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHH
Confidence 4667889 999999999999998744322111 1 111346899999999533 8999998765 2334455
Q ss_pred HHHHHH
Q 010053 203 VQLAKS 208 (519)
Q Consensus 203 v~~vk~ 208 (519)
++.+-.
T Consensus 132 l~~la~ 137 (153)
T 2w3g_A 132 VQALAA 137 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 42
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=88.21 E-value=0.22 Score=42.46 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=46.4
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecC-----CceEeeccccccc---cCHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTA-----CGVVELGSSDLIK---EDWSLV 203 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~-----~GVvELGSt~~i~---E~~~~v 203 (519)
.++.+.| +.|+++.+++++++.+....+. +.........|+++++|||+. -|||.+++.+.-. ++..++
T Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l 150 (171)
T 3ci6_A 74 SLQLSEG-LVGLVGQREEIVNLENASKHER--FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFL 150 (171)
T ss_dssp EEETTSH-HHHHHHHHTSCEEESSGGGSTT--C---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHH
T ss_pred eeeccCC-eehhhhccCceEEecCCCcCcc--hhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 5778899 9999999999999986543221 111111245689999999953 2899999886432 244444
Q ss_pred HHHHH
Q 010053 204 QLAKS 208 (519)
Q Consensus 204 ~~vk~ 208 (519)
+.+-.
T Consensus 151 ~~la~ 155 (171)
T 3ci6_A 151 VTLCA 155 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 43
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.72 E-value=2 Score=43.03 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=50.2
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe--eCCeEEEEEEEEcC--CCCCCHHHHHHHHHH
Q 010053 449 GSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS--VRETMLQDVVVRIP--EGLISEEVIRSAIFQ 515 (519)
Q Consensus 449 g~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~--~~d~v~~ti~vkv~--~~~~s~e~L~~aL~~ 515 (519)
...+.|.+.|++++|+..+|-..|-+.|+.+++++..+ ..+.++-.+.+..+ +...+.++|+.++..
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999998874 34544444444444 324678899888753
No 44
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=86.79 E-value=0.56 Score=41.25 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=49.6
Q ss_pred cCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEec------CCceEeecc-cccc---ccCHHHHH
Q 010053 135 IGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVST------ACGVVELGS-SDLI---KEDWSLVQ 204 (519)
Q Consensus 135 ~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~------~~GVvELGS-t~~i---~E~~~~v~ 204 (519)
.|+| +.|+++.+|+++.+.+....+. ...+.. +...|++.++|||+ .-|||.+++ ...- .++..+++
T Consensus 70 ~~~~-~~~~~~~~~~~~~v~d~~~~~~-~~~~~~-~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~ 146 (181)
T 2qyb_A 70 EIET-YIGEAFLSNRLQFVNDTQYMTK-PLTREL-MQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLE 146 (181)
T ss_dssp CTTS-HHHHHHHHTSCEEESCGGGCSC-HHHHHH-HHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHH
T ss_pred CCCC-chhhhhhcCCCEEecChhcCCc-hhhHHH-HHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 4788 9999999999999987654332 112222 23469999999995 458999998 5432 34555666
Q ss_pred HHHHHc
Q 010053 205 LAKSLF 210 (519)
Q Consensus 205 ~vk~~f 210 (519)
.+-..+
T Consensus 147 ~la~~~ 152 (181)
T 2qyb_A 147 SLAGQL 152 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 45
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=86.50 E-value=0.26 Score=42.46 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCCcceeeeeecCCeeeeeCCCCcCccchhhh--hhhhhcCccEEEEEecCC-----ceEeeccccc----cccCHHHHH
Q 010053 136 GDGSVLGRVFSSGDYVWLTGDHELQLYECERV--KEARMHGIQTLVCVSTAC-----GVVELGSSDL----IKEDWSLVQ 204 (519)
Q Consensus 136 G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~--~~a~~aGiqTivciP~~~-----GVvELGSt~~----i~E~~~~v~ 204 (519)
|.| +.|+++.+++++++.+....+.....+. -.....|++.++|+|+.. |||.+++... -.+|.++++
T Consensus 72 ~~~-~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~ 150 (169)
T 3oov_A 72 RGG-VITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIK 150 (169)
T ss_dssp GGH-HHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHH
T ss_pred ccc-hHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHH
Confidence 788 9999999999999987554332221211 123347899999999533 8999998643 234555665
Q ss_pred HHHHH
Q 010053 205 LAKSL 209 (519)
Q Consensus 205 ~vk~~ 209 (519)
.+-..
T Consensus 151 ~~a~~ 155 (169)
T 3oov_A 151 LFADQ 155 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 46
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=85.70 E-value=0.43 Score=48.16 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=43.6
Q ss_pred eeecCCCcceeeeeecCCeeeee-CCCCcCccchhhhhhhh-hcCccEEEEEecCC------ceEeecccc
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLT-GDHELQLYECERVKEAR-MHGIQTLVCVSTAC------GVVELGSSD 194 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~-~~~~~~~~~~~r~~~a~-~aGiqTivciP~~~------GVvELGSt~ 194 (519)
.++.|.| +.|+++.+|+++++. +....+.....+.+... ..+++.++|||+.. |||.+.+..
T Consensus 262 ~~~~~~~-~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 262 RVPIGKG-FAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEETTSH-HHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eccCCCc-hhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 5788999 999999999999998 65443322222222221 24578899999653 899998876
No 47
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=83.12 E-value=0.54 Score=41.16 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=50.0
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeeccccc----cccCHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDL----IKEDWSL 202 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~----i~E~~~~ 202 (519)
.|+.|.| +.|+++.+|+++++.+....+...... ......+++.++|+|+.. |||.+..... -.+|..+
T Consensus 85 ~~~~~~~-~~~~v~~~~~~~~i~d~~~~~~~~~~~-~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~l 162 (189)
T 2zmf_A 85 RFSIEKG-IAGQVARTGEVLNIPDAYADPRFNREV-DLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENN 162 (189)
T ss_dssp EEETTSH-HHHHHHHHCCCEEESCGGGSTTCCTHH-HHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHH
T ss_pred ccCCCcc-HHHHHHHhCCeEEEecccccccccccc-hhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHH
Confidence 5889999 999999999999998765433222222 222346899999999432 6787764432 2345556
Q ss_pred HHHHHHH
Q 010053 203 VQLAKSL 209 (519)
Q Consensus 203 v~~vk~~ 209 (519)
++.+-..
T Consensus 163 l~~lA~q 169 (189)
T 2zmf_A 163 FKMFAVF 169 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 48
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=80.58 E-value=0.87 Score=50.37 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=52.1
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhh-hcCccEEEEEec--C-C---ceEeecccccc----ccCH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEAR-MHGIQTLVCVST--A-C---GVVELGSSDLI----KEDW 200 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~-~aGiqTivciP~--~-~---GVvELGSt~~i----~E~~ 200 (519)
.++.|.| +.|+++.+|+++++.+....+. |.+..... ..+++.++|+|+ . + |||.+.+...- .+|.
T Consensus 245 ~~~~~~g-i~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 245 RIPADQG-IAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEETTSH-HHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eccCCCC-HHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 5788999 9999999999999987655432 22222111 156899999994 3 2 89999876532 4577
Q ss_pred HHHHHHHHHcC
Q 010053 201 SLVQLAKSLFG 211 (519)
Q Consensus 201 ~~v~~vk~~f~ 211 (519)
.+++.+-....
T Consensus 322 ~ll~~lA~~~a 332 (691)
T 3ibj_A 322 DLATAFSIYCG 332 (691)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 49
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=78.32 E-value=1.5 Score=43.28 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=50.5
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhh-cCccEEEEEec-CC-----ceEeecccccc----ccCH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARM-HGIQTLVCVST-AC-----GVVELGSSDLI----KEDW 200 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~-aGiqTivciP~-~~-----GVvELGSt~~i----~E~~ 200 (519)
.|+.|.| +.|+++.+|+++++.+....+. |.+...... ..++.++|||+ .. |||.+++...- .++.
T Consensus 245 ~~~~~~~-~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~ 321 (368)
T 1mc0_A 245 RIPADQG-IAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (368)
T ss_dssp EECTTSH-HHHHHHHHCCCEEESCSTTCTT--CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHH
T ss_pred eecCCCc-eeeeehhhCCEEEecCcccCcc--cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHH
Confidence 5778899 9999999999999987654332 222221111 23599999995 32 89999887543 3455
Q ss_pred HHHHHHHHHc
Q 010053 201 SLVQLAKSLF 210 (519)
Q Consensus 201 ~~v~~vk~~f 210 (519)
.+++.+-...
T Consensus 322 ~ll~~la~~~ 331 (368)
T 1mc0_A 322 DLATAFSIYC 331 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5665554443
No 50
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=77.83 E-value=9.2 Score=38.05 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=46.0
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEe--eCCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSS--VRETMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~--~~d~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
..++|.+.|++++|+...|-..|-++|+.+++++..+ ..+.++-.+.+..+. .+.++|+.++.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~ 70 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFG 70 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHH
Confidence 4578999999999999999999999999999998763 345444444454443 23447777764
No 51
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=76.65 E-value=2.9 Score=38.44 Aligned_cols=62 Identities=6% Similarity=0.113 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
-.|.|...+++|.|.+|...|.+.|+.+.+.++.... +....+|.+. ++ .-..++|...|.+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d-~~~leqI~kqL~K 67 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD-EKVLEQIEKQLHK 67 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc-HHHHHHHHHHHcC
Confidence 3678899999999999999999999999999887655 4555667776 33 2224566665554
No 52
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=76.07 E-value=2 Score=38.75 Aligned_cols=76 Identities=7% Similarity=0.170 Sum_probs=48.1
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecC-----CceEeeccccccc---cCHHHH
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTA-----CGVVELGSSDLIK---EDWSLV 203 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~-----~GVvELGSt~~i~---E~~~~v 203 (519)
.++.+.+ +.|+++.+|+++=+.... +...|.....+...|+++++|+|+. -|||-|++...-. +|..++
T Consensus 54 ~ip~~~s-~~~~v~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l 130 (165)
T 3o5y_A 54 TIPKEQS-LYWSALDQRQTIFRSLTD--TQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFL 130 (165)
T ss_dssp EECSTTC-HHHHHHHHTSCEEEESCC--TTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHH
T ss_pred ccCCccC-HHHHHHHhCCeEEEcCcc--cccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHH
Confidence 4666677 888999999998543222 1223322233456799999999942 2899999876432 345555
Q ss_pred HHHHHHc
Q 010053 204 QLAKSLF 210 (519)
Q Consensus 204 ~~vk~~f 210 (519)
+.+-+..
T Consensus 131 ~~la~~~ 137 (165)
T 3o5y_A 131 EQLTDHL 137 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 53
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=76.07 E-value=0.97 Score=44.76 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=49.4
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhh-hhhhcCccEEEEEec-CC------ceEeeccccc----cccC
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVK-EARMHGIQTLVCVST-AC------GVVELGSSDL----IKED 199 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~-~a~~aGiqTivciP~-~~------GVvELGSt~~----i~E~ 199 (519)
.|+.|.| +.|+++.+|+++++.+....+. ..+ .+...++++++|||+ .+ |||.+.+... -.+|
T Consensus 75 ~~~~~~g-~~g~~~~~~~~~~i~d~~~~~~----~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d 149 (368)
T 1mc0_A 75 SFPLTMG-RLGQVVEDKQCIQLKDLTSDDV----QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDED 149 (368)
T ss_dssp EEESSSS-SHHHHHHHCCCEEGGGSCHHHH----HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHH
T ss_pred eeccccC-HHHHHHhcCCeEEecccccccc----cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHH
Confidence 5889999 9999999999999987543221 111 112357899999994 33 7999876543 2345
Q ss_pred HHHHHHHHHHc
Q 010053 200 WSLVQLAKSLF 210 (519)
Q Consensus 200 ~~~v~~vk~~f 210 (519)
..+++.+-..+
T Consensus 150 ~~~l~~la~~~ 160 (368)
T 1mc0_A 150 EHVIQHCFHYT 160 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666544433
No 54
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=74.28 E-value=5.1 Score=35.38 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEee
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSV 487 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~ 487 (519)
-|+|.|.+|.|++.+|+++|.+.++++..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 37899999999999999999999999999999766
No 55
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=73.97 E-value=1.2 Score=44.82 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=44.0
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCc-cchhhhhhhh-hcCccEEEEEecC--C----ceEeeccc
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQL-YECERVKEAR-MHGIQTLVCVSTA--C----GVVELGSS 193 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~-~~~~r~~~a~-~aGiqTivciP~~--~----GVvELGSt 193 (519)
.++.|.| +.|+++.+|+++++.+....+. ..|.+..... ..++++++|||+. + |||.+.+.
T Consensus 75 ~~~~~~g-~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKG-IAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSH-HHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCc-hhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 5788999 9999999999999988654322 2333333222 3578999999953 2 78998876
No 56
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=73.14 E-value=7.7 Score=37.38 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=43.5
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC----C-eEEEEEEEEcCCCCCCHHHHHHHHH
Q 010053 451 EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR----E-TMLQDVVVRIPEGLISEEVIRSAIF 514 (519)
Q Consensus 451 ev~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~----d-~v~~ti~vkv~~~~~s~e~L~~aL~ 514 (519)
.+-|.|.+.+++|+|.+|+.+|-+.+..+.+.+..... + ...-+ +++.+. ..++|-..|.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~--~Le~LL~kLr 68 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG--DFEKILERVK 68 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS--CHHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC--CHHHHHHHHh
Confidence 46789999999999999999999999999999998865 3 32222 777655 6677766664
No 57
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=71.13 E-value=3.4 Score=37.99 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeC--CeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVR--ETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~--d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
-.|.|..++++|.|.+|...|...|+.+.+.++.... +....+|.+. ++ .-..++|...|.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d-~~~leql~kQL~K 68 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP-DEIVEQITKQLNK 68 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc-HHHHHHHHHHhcC
Confidence 3678889999999999999999999999999887655 4556677776 22 2224566666554
No 58
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=70.32 E-value=5.5 Score=34.96 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=38.8
Q ss_pred eeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccc
Q 010053 141 LGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSD 194 (519)
Q Consensus 141 pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~ 194 (519)
|+.++.+|+++.+.+....+...+.+..+. ..|++.++|||+.. |||.+-+..
T Consensus 85 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~-~~~~~s~l~vPi~~~~~l~G~l~~~~~~ 142 (172)
T 2k2n_A 85 QPESWGLSARVPLGEPLQRPVDPCHVHYLK-SMGVASSLVVPLMHHQELWGLLVSHHAE 142 (172)
T ss_dssp CCCSCCCSSCCCCCSSSSCCCCHHHHHHHH-TTTCSEEEECCCSCSSCCCEEEEEEECS
T ss_pred cccccccCCceeccchhhcCCCHHHHHHHH-hcCCeEEEEEEEEECCEEEEEEEEEeCC
Confidence 444599999999998766555555555443 47999999999533 899888764
No 59
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=70.12 E-value=6.9 Score=36.93 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC--eEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 010053 452 AMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE--TMLQDVVVRIPEGLISEEVIRSAIFQR 516 (519)
Q Consensus 452 v~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d--~v~~ti~vkv~~~~~s~e~L~~aL~~~ 516 (519)
-.|.|.-++++|.|.+|...|...|+.+.+..+....+ ....+|++.-.+ ...|+|...|.+-
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e--~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH--HHHHHHHHHhcCc
Confidence 46778889999999999999999999999988875544 555677776332 3467888877653
No 60
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=69.50 E-value=3.5 Score=45.45 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=46.1
Q ss_pred eeeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEec-CC------ceEeeccccc----cccC
Q 010053 131 RSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVST-AC------GVVELGSSDL----IKED 199 (519)
Q Consensus 131 ~~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~-~~------GVvELGSt~~----i~E~ 199 (519)
..++.| | +.|+++.+|+|+++.+....+ .+... ......+++++|||+ .+ |||.+..... -.+|
T Consensus 75 ~~~p~~-G-i~g~v~~~~~pv~i~d~~~~~--~~~~~-~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d 149 (691)
T 3ibj_A 75 VSFPLT-G-CLGQVVEDKKSIQLKDLTSED--VQQLQ-SMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDED 149 (691)
T ss_dssp EEEECC-S-SSHHHHHHCCCEEGGGSCHHH--HHHHH-HHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTH
T ss_pred eecCCc-c-HHHHHHHHCCeEEeccchhcc--ccccc-cccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHH
Confidence 368899 9 999999999999998764322 11111 111256899999995 33 7998764422 2345
Q ss_pred HHHHHHH
Q 010053 200 WSLVQLA 206 (519)
Q Consensus 200 ~~~v~~v 206 (519)
..+++.+
T Consensus 150 ~~lL~~l 156 (691)
T 3ibj_A 150 EHVIQHC 156 (691)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 61
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=68.56 E-value=1.5 Score=39.04 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccccc---ccCHHHHHHHH
Q 010053 136 GDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLI---KEDWSLVQLAK 207 (519)
Q Consensus 136 G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i---~E~~~~v~~vk 207 (519)
+.| +.|+++.+|+++.+.+....+ .+.+.-.....|++.++|||+.. |||.+.+...- .+|..+++.+-
T Consensus 94 ~~~-~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA 170 (184)
T 3p01_A 94 QDP-LTNEAIATGQIQVAANIAKDP--KLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSA 170 (184)
T ss_dssp GCH-HHHHHHHHCSCEEESCGGGCH--HHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCc-HHHHHHhhCCeEEEeccccCc--cccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHH
Confidence 356 889999999999987654322 22222222346999999999532 89999665432 23445555544
Q ss_pred H
Q 010053 208 S 208 (519)
Q Consensus 208 ~ 208 (519)
.
T Consensus 171 ~ 171 (184)
T 3p01_A 171 Q 171 (184)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=66.12 E-value=7.2 Score=35.19 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=45.1
Q ss_pred eeeeecCCeeeeeCCCCcCccchhhhhhhhhcCccEEEEEecCC-----ceEeecccccc---ccCHHHHHHHHHHc
Q 010053 142 GRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTAC-----GVVELGSSDLI---KEDWSLVQLAKSLF 210 (519)
Q Consensus 142 G~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~aGiqTivciP~~~-----GVvELGSt~~i---~E~~~~v~~vk~~f 210 (519)
+.++.+|+++-+.+....+...+.+.++ ...|++.++|||+.. |||.+.+...- .++.++++.+-..+
T Consensus 116 ~~~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~ 191 (208)
T 2lb5_A 116 PESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQV 191 (208)
T ss_dssp SSCCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHH
Confidence 3479999999888776554444555544 357999999999432 89988876432 23445555555444
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.35 E-value=17 Score=27.84 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010053 347 ERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQAR 403 (519)
Q Consensus 347 ER~RR~kln~~f~~LrslvP~~~k~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l~~ 403 (519)
||++|.+...+..+-++ =..--.||..|+.+++.|+.+...|..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776 234567888888888888887777763
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=63.51 E-value=1.5 Score=50.14 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhh-hhhcCccEEEEEecCC------ceEeeccccc------ccc
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKE-ARMHGIQTLVCVSTAC------GVVELGSSDL------IKE 198 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~-a~~aGiqTivciP~~~------GVvELGSt~~------i~E 198 (519)
.|+.|.| +.|.++.+|+++++.+....+ .|..... ....++++++|||+.. |||.+.+... -.+
T Consensus 225 ~~p~~~g-i~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~ 301 (878)
T 3bjc_A 225 RLEWNKG-IVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEK 301 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeCCcc-HHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHH
Confidence 5788999 999999999999999765432 2222111 1135689999999654 7999886542 234
Q ss_pred CHHHHHHHHHHcC
Q 010053 199 DWSLVQLAKSLFG 211 (519)
Q Consensus 199 ~~~~v~~vk~~f~ 211 (519)
|..+++.+-..+.
T Consensus 302 D~~lL~~lA~~~a 314 (878)
T 3bjc_A 302 DEKDFAAYLAFCG 314 (878)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 5556665554443
No 65
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=56.54 E-value=2.3 Score=48.53 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhhhhhh-h---cCccEEEEEecC-C------ceEeecccc
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEAR-M---HGIQTLVCVSTA-C------GVVELGSSD 194 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~-~---aGiqTivciP~~-~------GVvELGSt~ 194 (519)
.++.|.| +.|+++.+|+++++.+....+ .|.+..... . .+++.++|||+. . |||+|.+..
T Consensus 407 ~~p~~~g-i~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 407 ANKINYM-YAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccchhhh-HHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 5778899 999999999999998754432 233222211 1 469999999943 2 889887653
No 66
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=54.06 E-value=56 Score=28.06 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=38.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+|-+.-+.++|.+.+++.+|.+.|+.+...-....++.....| +.. +.+...++|++
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~~----d~~~A~~~L~~ 130 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RPS----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EES----CHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--EeC----CHHHHHHHHHH
Confidence 4556678999999999999999999996644432334333333 332 45566666654
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.55 E-value=18 Score=25.69 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 010053 382 AYIKELRAKVDELEAKLREQARK 404 (519)
Q Consensus 382 ~YIk~Lq~~v~~Le~~~~~l~~~ 404 (519)
.|+.+|+.++++|+....+|+.+
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888888888777744
No 68
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.97 E-value=35 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 377 LADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 377 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
+.+--+||++|+++..+|..-++-+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45667899999999999988776665
No 69
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=41.02 E-value=1.1e+02 Score=26.21 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=30.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE 489 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d 489 (519)
.|.|.-++++|.+.+|..+|.+.|+.|.........+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4666778999999999999999999998876664444
No 70
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.57 E-value=30 Score=26.06 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010053 382 AYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 382 ~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
.||..|+.+++.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999888876
No 71
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.45 E-value=71 Score=22.14 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 371 MDKASLLADAVAYIKELRAKVDELEAKLREQ 401 (519)
Q Consensus 371 ~dKaSIL~~AI~YIk~Lq~~v~~Le~~~~~l 401 (519)
|..+.-|+++=+-|..|+.+++.|..++-.+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566789999999999999999999988664
No 72
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=35.04 E-value=75 Score=31.15 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=48.5
Q ss_pred EEEEEEEc---CCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQC---PDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c---~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
...|-+.. ++++|.|.++|..|...|+......+-...+ .--|.|.+.++ . ...+.++.||.+
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-~~d~~v~~aL~~ 252 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-AITTDIKKVIAI 252 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-CSCHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-CCcHHHHHHHHH
Confidence 34455556 7889999999999999999999999887766 34578888887 4 345677777754
No 73
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=33.07 E-value=40 Score=25.15 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 010053 382 AYIKELRAKVDELEAKLREQARK 404 (519)
Q Consensus 382 ~YIk~Lq~~v~~Le~~~~~l~~~ 404 (519)
.||.+|+.+|..|+.+...|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998888743
No 74
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=32.56 E-value=1e+02 Score=30.48 Aligned_cols=62 Identities=6% Similarity=0.005 Sum_probs=47.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhcCceEEEEEEEeeCC-eEEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 453 MIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRE-TMLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 453 ~I~I~c~~r~~~L~~Im~aLeel~LdV~~asvS~~~d-~v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
.|-+..++++|.|.++|..|...|+......+-...+ .--|.|.+.++.. ...+.++.||.+
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~-~~d~~v~~aL~~ 264 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH-REDQNVHNALEN 264 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC-TTSHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC-CCcHHHHHHHHH
Confidence 3444446899999999999999999999999887776 4457888887643 344577777754
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.88 E-value=1.2e+02 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 377 LADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 377 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
|.+|++=-++|..+|..|+.++..++
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888777776665
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.69 E-value=53 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010053 381 VAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 381 I~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
-.||++|+.+|.+|+.....+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~ 49 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTT 49 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889888888887665543
No 77
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=27.52 E-value=2.2e+02 Score=24.05 Aligned_cols=63 Identities=8% Similarity=0.159 Sum_probs=46.6
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhc---CceEEEEEEEeeCCeEEEEEEEEcCCCCCCHHHHHHHHHHHhh
Q 010053 450 SEAMIRVQCPDINYPAAKLMDVLRDL---EFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQ 518 (519)
Q Consensus 450 ~ev~I~I~c~~r~~~L~~Im~aLeel---~LdV~~asvS~~~d~v~~ti~vkv~~~~~s~e~L~~aL~~~l~ 518 (519)
.+..++|-.+..+.+...|.++++.. +.++ ..+-|..+..+=.+|.+.+. +.|+| .+|.++|.
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~----S~eQv-~aiY~~L~ 100 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT----HIEQV-ETLYEELG 100 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS----SHHHH-HHHHHHHS
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC----CHHHH-HHHHHHHh
Confidence 45677777788888999999999988 6777 66777777777777777664 46665 55555553
No 78
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=26.81 E-value=48 Score=26.61 Aligned_cols=34 Identities=26% Similarity=0.526 Sum_probs=27.0
Q ss_pred cccCCCCchHHHHHHHHHhcc-CCCCc--eEEEEeec
Q 010053 14 MPFCQETSPTLQQRLQFIVQN-RPEWW--VYSIFWQP 47 (519)
Q Consensus 14 ~~~~~~~~~~Lq~~L~~lv~~-~~~~W--sYAIFWq~ 47 (519)
+.+..+-|+.-++.|-.+-+. ++++| .||.|-|=
T Consensus 35 V~L~~dePEvaa~AL~~A~eapn~EGwP~VYALFlqG 71 (90)
T 2dbs_A 35 VLLPLDEPEVAAQALAWAMEAPNPEGWPSVYALFLQG 71 (90)
T ss_dssp EEEETTCHHHHHHHHHHHHSCCCSSSSCEEEEEEETT
T ss_pred EecCCCCHHHHHHHHHHHHhCCCCCCChhHHHHHhCC
Confidence 445566678899999999887 68999 79999763
No 79
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=25.97 E-value=1.1e+02 Score=27.05 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=32.7
Q ss_pred EEEeCcEEEEEEEc-CCCCChHHHHHHHHHhcCceEEEEEEE
Q 010053 445 VKIVGSEAMIRVQC-PDINYPAAKLMDVLRDLEFHVHHASVS 485 (519)
Q Consensus 445 V~i~g~ev~I~I~c-~~r~~~L~~Im~aLeel~LdV~~asvS 485 (519)
|....+.++|.|.. +.++|.+.+|+.+|.+.|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 34446677888884 888999999999999999888776544
No 80
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=25.75 E-value=2.8e+02 Score=27.91 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEeeCCeE-EEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 460 DINYPAAKLMDVLRDLEFHVHHASVSSVRETM-LQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 460 ~r~~~L~~Im~aLeel~LdV~~asvS~~~d~v-~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
+++|.|.++|..|...|+......+-...+.. -|.|.+.++. ....+.++.||.+
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg-~~~d~~v~~AL~~ 272 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDA-APWEERFRDALVE 272 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESS-CTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeC-CcCCHHHHHHHHH
Confidence 57999999999999999999999988887744 5788888864 3445678777764
No 81
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=25.27 E-value=2.1e+02 Score=25.26 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=31.6
Q ss_pred EEEeCcEEEEEEEcCC---CCChHHHHHHHHHhcCceEEEEE
Q 010053 445 VKIVGSEAMIRVQCPD---INYPAAKLMDVLRDLEFHVHHAS 483 (519)
Q Consensus 445 V~i~g~ev~I~I~c~~---r~~~L~~Im~aLeel~LdV~~as 483 (519)
|.+..+-+.|.|.... .+|.+.+++++|.+.|+.|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 4444667788888764 78999999999999999998854
No 82
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=25.13 E-value=1.5e+02 Score=29.71 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=47.6
Q ss_pred EEEEEEEcC-CCCChHHHHHHHHHhcCceEEEEEEEeeCCe-EEEEEEEEcCCCCCCHHHHHHHHHH
Q 010053 451 EAMIRVQCP-DINYPAAKLMDVLRDLEFHVHHASVSSVRET-MLQDVVVRIPEGLISEEVIRSAIFQ 515 (519)
Q Consensus 451 ev~I~I~c~-~r~~~L~~Im~aLeel~LdV~~asvS~~~d~-v~~ti~vkv~~~~~s~e~L~~aL~~ 515 (519)
...|-+.-+ +++|.|.++|..|...|+......+-...+. --|.|.+.++. ....+.++.||..
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg-~~~d~~v~~aL~~ 266 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADG-HATDSRVADALAG 266 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEES-CTTSHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeC-CCCcHHHHHHHHH
Confidence 344556665 7899999999999999999999988776653 34777887753 3445577777654
No 83
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=25.00 E-value=1.7e+02 Score=26.17 Aligned_cols=41 Identities=29% Similarity=0.245 Sum_probs=30.6
Q ss_pred EEEeCcEEEEEEE-cCCCCChHHHHHHHHHhcCceEEEEEEE
Q 010053 445 VKIVGSEAMIRVQ-CPDINYPAAKLMDVLRDLEFHVHHASVS 485 (519)
Q Consensus 445 V~i~g~ev~I~I~-c~~r~~~L~~Im~aLeel~LdV~~asvS 485 (519)
|....+.++|.|. -+.++|.+.+|+..|.+.++.|.....+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 3444677888884 5788999999999999999555544333
No 84
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=24.84 E-value=33 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010053 382 AYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 382 ~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
.||..|+.+|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999998776553
No 85
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=24.70 E-value=65 Score=27.63 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=28.9
Q ss_pred eeeeecCCeeeeeCCCCcCccchhhh-hhhhhcCccEEEEEecCCceEee
Q 010053 142 GRVFSSGDYVWLTGDHELQLYECERV-KEARMHGIQTLVCVSTACGVVEL 190 (519)
Q Consensus 142 G~a~~sg~~~Wl~~~~~~~~~~~~r~-~~a~~aGiqTivciP~~~GVvEL 190 (519)
-..-..+.-+|+..++ ++.+.|.+. |+-+ .| |||||+|-.- ||++
T Consensus 43 n~IeIkdg~vrv~es~-CPdkiCv~~GwIsk-~G-q~IVCLPnkv-vI~I 88 (114)
T 2kpp_A 43 NLMEVDGERIRIKEDN-SPDQVGVKMGWKSK-AG-DTIVCLPHKV-FVEI 88 (114)
T ss_dssp EEEEEESSCEEEEEEC-CSSCHHHHHCSBCS-TT-CEEEEGGGTE-EEEE
T ss_pred EEEEEECCEEEEEECC-CCCeehhhcCCcCC-CC-CEEEEcCCEE-EEEE
Confidence 3455666677887664 667788876 4433 45 9999998321 4454
No 86
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=23.79 E-value=51 Score=27.64 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=30.2
Q ss_pred eeecCCCcceeeeeecCCeeeeeCCCCcCccchhhh-hhhhhcCccEEEEEe
Q 010053 132 SFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERV-KEARMHGIQTLVCVS 182 (519)
Q Consensus 132 ~F~~G~G~~pG~a~~sg~~~Wl~~~~~~~~~~~~r~-~~a~~aGiqTivciP 182 (519)
.|....| ..-..-..+.-+|+..++ ++.+.|.+. |+-+ -=|||||+|
T Consensus 34 ~i~~~~G-~~n~ieI~dg~vrv~es~-CPdkiCv~~GwIs~--~Gq~IVCLP 81 (101)
T 3ld7_A 34 TIKGKGA-QYNLMEVDGERIRIKEDN-SPDQVGVKMGWKSK--AGDTIVCLP 81 (101)
T ss_dssp EEECSTT-CEEEEEEETTEEEEEEEC-CSSCHHHHHCCBCS--TTCEEEETT
T ss_pred EEEcCCC-CEEEEEEECCEEEEEECC-CCCcccccCCCcCC--CCCEEEEcC
Confidence 3443344 345667777888888765 677788754 3322 248999988
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.73 E-value=94 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010053 377 LADAVAYIKELRAKVDELEAKLREQA 402 (519)
Q Consensus 377 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 402 (519)
+..||+-|.-||.++++|+.+...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988877655
No 88
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=22.94 E-value=47 Score=31.32 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHHHHHHHhccCCCCceEE----------EEeecCCCCCCCeeEEecc
Q 010053 24 LQQRLQFIVQNRPEWWVYS----------IFWQPLKDVNGRLVLSWGD 61 (519)
Q Consensus 24 Lq~~L~~lv~~~~~~WsYA----------IFWq~s~~~~g~~vL~WgD 61 (519)
=||||+.|+++. |=+. .||++++. ...|-|+|
T Consensus 25 keQRi~~L~~G~---~F~k~~~~r~~~k~~f~rLs~n---~k~L~y~d 66 (203)
T 3a98_B 25 KQQRLNRLVEGT---CFRKLNARRRQDKFWYCRLSPN---HKVLHYGD 66 (203)
T ss_dssp HHHHHHHHHHCE---EEECSSCCTTCCSEEEEEECTT---SSEEEEEE
T ss_pred HHHHHHHHHCCC---eEeccCCccccCceEEEEECCC---CceEEEcc
Confidence 378999999984 4221 48899886 46999998
No 89
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.72 E-value=1.3e+02 Score=26.71 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=36.8
Q ss_pred EEEeCcEEEEEEEc-CCCCChHHHHHHHHHhcCceEEEEEEEee---CCeEEEEEEEE
Q 010053 445 VKIVGSEAMIRVQC-PDINYPAAKLMDVLRDLEFHVHHASVSSV---RETMLQDVVVR 498 (519)
Q Consensus 445 V~i~g~ev~I~I~c-~~r~~~L~~Im~aLeel~LdV~~asvS~~---~d~v~~ti~vk 498 (519)
|....+.++|.|.. +.++|.+.+|+.+|.+.++.|.....+.. .+..-.+|.+.
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 34456777787765 67789999999999999988876654422 22333455554
No 90
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.04 E-value=1.8e+02 Score=25.70 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=31.7
Q ss_pred EEEEeCcEEEEEEEcCC---CCChHHHHHHHHHhcCceEEEEE
Q 010053 444 DVKIVGSEAMIRVQCPD---INYPAAKLMDVLRDLEFHVHHAS 483 (519)
Q Consensus 444 ~V~i~g~ev~I~I~c~~---r~~~L~~Im~aLeel~LdV~~as 483 (519)
.|.+.++-+.|.|.... .+|.+.+++++|.+.|+.|.-.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 45555677788877754 78999999999999999996554
No 91
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.37 E-value=91 Score=23.82 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010053 380 AVAYIKELRAKVDELEAKLREQAR 403 (519)
Q Consensus 380 AI~YIk~Lq~~v~~Le~~~~~l~~ 403 (519)
--.|+.+|+.+++.|+.+...|..
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888877777763
No 92
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.28 E-value=99 Score=21.21 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010053 384 IKELRAKVDELEAKLREQA 402 (519)
Q Consensus 384 Ik~Lq~~v~~Le~~~~~l~ 402 (519)
+++|+.+|++|-.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5677777777777666665
Done!