Query 010055
Match_columns 519
No_of_seqs 50 out of 52
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 20:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14988 DUF4515: Domain of un 81.3 7.4 0.00016 38.2 8.1 81 56-136 76-175 (206)
2 PRK11637 AmiB activator; Provi 80.2 34 0.00073 36.2 13.1 78 55-132 45-135 (428)
3 PLN03144 Carbon catabolite rep 71.4 3.3 7.2E-05 46.6 3.1 32 353-384 174-205 (606)
4 PRK09239 chorismate mutase; Pr 66.7 72 0.0016 28.4 9.9 94 89-192 7-100 (104)
5 PF10186 Atg14: UV radiation r 66.0 86 0.0019 30.4 11.2 90 57-147 27-124 (302)
6 PF12128 DUF3584: Protein of u 60.5 1.7E+02 0.0038 35.5 14.4 107 57-164 788-894 (1201)
7 TIGR03185 DNA_S_dndD DNA sulfu 59.6 46 0.001 37.2 9.0 86 52-137 393-486 (650)
8 PRK09039 hypothetical protein; 58.9 79 0.0017 33.2 10.1 122 59-192 48-171 (343)
9 PF04012 PspA_IM30: PspA/IM30 58.3 58 0.0013 31.2 8.4 116 46-192 20-139 (221)
10 KOG3091 Nuclear pore complex, 58.1 49 0.0011 37.1 8.7 90 61-185 359-448 (508)
11 PLN02939 transferase, transfer 57.1 1.6E+02 0.0036 35.6 13.2 99 52-154 130-280 (977)
12 PF03961 DUF342: Protein of un 56.9 18 0.00038 38.7 5.1 84 302-425 117-200 (451)
13 COG1704 LemA Uncharacterized c 54.2 27 0.00059 34.5 5.5 47 134-192 91-138 (185)
14 TIGR01005 eps_transp_fam exopo 52.2 1.3E+02 0.0027 34.1 11.0 109 63-171 200-329 (754)
15 PRK14153 heat shock protein Gr 50.0 1.8E+02 0.0039 28.8 10.4 64 141-212 83-150 (194)
16 KOG0978 E3 ubiquitin ligase in 49.4 1.8E+02 0.0039 34.1 11.6 110 81-192 499-621 (698)
17 PRK10698 phage shock protein P 46.2 1.8E+02 0.0038 28.9 9.7 73 47-128 22-103 (222)
18 KOG0977 Nuclear envelope prote 44.7 1.3E+02 0.0029 34.1 9.5 45 57-102 36-80 (546)
19 PF15294 Leu_zip: Leucine zipp 43.0 2.6E+02 0.0056 29.4 10.6 41 59-99 134-174 (278)
20 PRK10361 DNA recombination pro 41.8 2.8E+02 0.0061 31.1 11.4 57 60-117 56-112 (475)
21 TIGR01795 CM_mono_cladeE monof 41.6 2E+02 0.0043 25.2 8.3 83 93-188 4-89 (94)
22 COG2900 SlyX Uncharacterized p 41.6 54 0.0012 28.2 4.7 37 87-126 3-41 (72)
23 PF11464 Rbsn: Rabenosyn Rab b 41.3 59 0.0013 25.4 4.4 40 64-105 3-42 (42)
24 CHL00140 rpl6 ribosomal protei 41.1 43 0.00092 32.2 4.5 53 430-483 80-138 (178)
25 TIGR02977 phageshock_pspA phag 40.6 2.9E+02 0.0063 27.0 10.2 54 46-108 21-75 (219)
26 COG4942 Membrane-bound metallo 39.6 5.7E+02 0.012 28.5 13.0 94 58-159 39-132 (420)
27 PRK14148 heat shock protein Gr 36.8 3.8E+02 0.0082 26.7 10.3 64 141-212 90-157 (195)
28 PF01895 PhoU: PhoU domain; I 36.0 1.3E+02 0.0028 23.4 5.8 50 53-102 24-73 (88)
29 COG1579 Zn-ribbon protein, pos 35.8 2.3E+02 0.0049 29.1 8.9 83 63-154 37-119 (239)
30 PF10186 Atg14: UV radiation r 35.7 4.2E+02 0.009 25.8 10.4 18 90-107 89-106 (302)
31 PRK14149 heat shock protein Gr 34.2 3E+02 0.0064 27.4 9.1 63 141-212 86-152 (191)
32 KOG0250 DNA repair protein RAD 34.2 5.3E+02 0.011 31.9 12.6 136 53-192 737-891 (1074)
33 PF09726 Macoilin: Transmembra 33.9 1.9E+02 0.0041 33.6 8.9 67 55-128 543-611 (697)
34 PRK14154 heat shock protein Gr 33.3 4.6E+02 0.0099 26.4 10.4 65 141-212 102-171 (208)
35 PRK14162 heat shock protein Gr 33.3 4.8E+02 0.01 25.9 10.4 64 141-212 89-156 (194)
36 PRK02119 hypothetical protein; 33.2 93 0.002 26.2 4.8 37 85-124 2-40 (73)
37 COG0576 GrpE Molecular chapero 33.2 3.8E+02 0.0082 26.3 9.6 63 142-212 87-154 (193)
38 PRK14140 heat shock protein Gr 33.1 5E+02 0.011 25.8 10.9 65 140-212 86-154 (191)
39 PRK02793 phi X174 lysis protei 33.0 1E+02 0.0022 25.9 5.0 33 89-124 5-39 (72)
40 TIGR03185 DNA_S_dndD DNA sulfu 31.9 1.7E+02 0.0037 32.9 7.9 58 400-460 585-649 (650)
41 PF09787 Golgin_A5: Golgin sub 31.8 2.2E+02 0.0049 31.3 8.7 64 51-114 110-184 (511)
42 PRK14158 heat shock protein Gr 30.5 3.8E+02 0.0083 26.6 9.2 64 141-211 90-156 (194)
43 PF04849 HAP1_N: HAP1 N-termin 29.8 1.9E+02 0.0041 30.8 7.4 48 60-107 230-277 (306)
44 PF14048 MBD_C: C-terminal dom 29.8 39 0.00085 30.0 2.2 19 58-76 77-95 (96)
45 PRK11281 hypothetical protein; 29.3 2.8E+02 0.0061 34.1 9.6 91 89-181 357-487 (1113)
46 PRK14139 heat shock protein Gr 28.7 4.5E+02 0.0098 25.9 9.3 64 141-212 82-147 (185)
47 PF04156 IncA: IncA protein; 28.3 2.7E+02 0.0058 26.0 7.5 8 174-181 174-181 (191)
48 KOG2314 Translation initiation 28.2 43 0.00093 38.4 2.6 79 14-120 549-636 (698)
49 PRK00295 hypothetical protein; 28.1 1.4E+02 0.003 24.8 4.9 31 90-123 3-35 (68)
50 PRK09293 fructose-1,6-bisphosp 27.5 85 0.0018 33.0 4.5 77 320-415 145-222 (327)
51 TIGR02169 SMC_prok_A chromosom 27.3 5.8E+02 0.013 29.6 11.3 17 400-416 606-622 (1164)
52 KOG1222 Kinesin associated pro 27.2 2.3E+02 0.005 32.7 7.8 125 27-180 234-360 (791)
53 PLN02542 fructose-1,6-bisphosp 27.1 94 0.002 34.1 4.8 80 320-417 234-314 (412)
54 PRK11281 hypothetical protein; 27.0 1.7E+02 0.0038 35.8 7.4 77 51-128 67-170 (1113)
55 PF09545 RE_AccI: AccI restric 26.6 4.3E+02 0.0093 28.6 9.3 102 68-187 128-234 (366)
56 PF04201 TPD52: Tumour protein 26.5 1.6E+02 0.0035 28.7 5.8 51 45-109 24-79 (162)
57 cd01246 PH_oxysterol_bp Oxyste 26.5 3.2E+02 0.007 21.5 8.2 76 429-504 11-89 (91)
58 PRK12595 bifunctional 3-deoxy- 26.3 2.5E+02 0.0055 29.9 7.7 81 63-143 3-95 (360)
59 PRK14161 heat shock protein Gr 25.6 6.4E+02 0.014 24.6 10.3 65 141-212 69-139 (178)
60 PRK04406 hypothetical protein; 25.5 1.7E+02 0.0036 24.9 5.1 32 89-123 8-41 (75)
61 PRK05498 rplF 50S ribosomal pr 25.5 1.2E+02 0.0026 29.0 4.8 53 430-483 80-138 (178)
62 PF14612 Ino80_Iec3: IEC3 subu 25.5 1.9E+02 0.0041 29.8 6.3 40 90-129 4-46 (232)
63 cd01253 PH_beta_spectrin Beta- 25.4 2.9E+02 0.0063 23.1 6.6 75 430-504 20-102 (104)
64 TIGR01801 CM_A chorismate muta 25.4 2E+02 0.0043 25.5 5.7 84 63-146 3-98 (102)
65 PTZ00421 coronin; Provisional 25.3 1.4E+02 0.0031 32.7 5.9 29 53-84 456-484 (493)
66 PF01025 GrpE: GrpE; InterPro 25.1 2.1E+02 0.0046 26.1 6.1 52 139-192 59-114 (165)
67 PF04012 PspA_IM30: PspA/IM30 25.1 1.3E+02 0.0028 28.8 4.9 47 53-99 87-133 (221)
68 PF08838 DUF1811: Protein of u 25.1 71 0.0015 29.1 2.9 33 61-95 11-43 (102)
69 PF14389 Lzipper-MIP1: Leucine 24.9 98 0.0021 26.8 3.7 34 43-76 47-80 (88)
70 PF01025 GrpE: GrpE; InterPro 24.7 3E+02 0.0064 25.1 7.0 19 140-158 94-112 (165)
71 PRK11020 hypothetical protein; 24.6 1.2E+02 0.0025 28.5 4.2 40 68-110 16-60 (118)
72 cd05829 Sortase_E Sortase E (S 24.4 1.9E+02 0.0041 26.5 5.7 52 316-367 41-96 (144)
73 PF07061 Swi5: Swi5; InterPro 23.8 2.9E+02 0.0062 24.0 6.3 59 89-154 4-65 (83)
74 COG1196 Smc Chromosome segrega 23.5 5.7E+02 0.012 31.1 10.7 130 57-190 369-499 (1163)
75 PF12240 Angiomotin_C: Angiomo 23.4 1.5E+02 0.0033 29.9 5.1 52 52-121 59-110 (205)
76 PRK14164 heat shock protein Gr 23.3 5.2E+02 0.011 26.2 8.8 61 141-212 120-181 (218)
77 COG1579 Zn-ribbon protein, pos 22.9 4.4E+02 0.0095 27.1 8.3 45 58-102 60-113 (239)
78 PRK06342 transcription elongat 22.5 1.1E+02 0.0025 29.0 4.0 42 52-98 32-77 (160)
79 PF00901 Orbi_VP5: Orbivirus o 22.4 7.3E+02 0.016 28.4 10.4 109 49-182 83-200 (508)
80 PRK14146 heat shock protein Gr 22.3 8.1E+02 0.018 24.7 10.4 64 141-212 104-171 (215)
81 PRK14154 heat shock protein Gr 22.2 7E+02 0.015 25.2 9.4 105 48-159 42-155 (208)
82 TIGR03654 L6_bact ribosomal pr 22.1 1.5E+02 0.0033 28.4 4.7 53 430-483 79-137 (175)
83 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 22.0 76 0.0016 30.7 2.7 119 379-503 46-195 (195)
84 TIGR01076 sortase_fam LPXTG-si 22.0 87 0.0019 28.2 2.9 51 315-366 30-85 (136)
85 PF00038 Filament: Intermediat 21.7 5.5E+02 0.012 25.7 8.7 48 60-107 212-259 (312)
86 PRK04325 hypothetical protein; 21.4 2.2E+02 0.0047 24.0 5.0 32 90-124 7-40 (74)
87 PRK06285 chorismate mutase; Pr 21.3 5.4E+02 0.012 22.2 8.9 84 91-184 6-89 (96)
88 cd00354 FBPase Fructose-1,6-bi 21.0 1.3E+02 0.0028 31.6 4.3 79 320-416 138-217 (315)
89 PF00038 Filament: Intermediat 20.8 3.7E+02 0.008 26.9 7.3 43 62-104 52-94 (312)
90 KOG3990 Uncharacterized conser 20.6 5.6E+02 0.012 27.2 8.6 29 47-75 215-243 (305)
91 PLN02262 fructose-1,6-bisphosp 20.6 1.3E+02 0.0028 32.1 4.3 77 321-415 158-235 (340)
92 PF13851 GAS: Growth-arrest sp 20.5 8.2E+02 0.018 24.0 13.5 109 51-159 56-178 (201)
93 PF04011 LemA: LemA family; I 20.5 5.5E+02 0.012 24.2 8.1 48 134-192 91-138 (186)
94 PF13851 GAS: Growth-arrest sp 20.4 5.1E+02 0.011 25.4 8.0 67 120-190 51-118 (201)
95 PF07743 HSCB_C: HSCB C-termin 20.2 4.8E+02 0.01 21.2 7.1 61 65-125 9-75 (78)
96 PF15070 GOLGA2L5: Putative go 20.1 5.4E+02 0.012 29.7 9.2 75 63-138 93-195 (617)
No 1
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.28 E-value=7.4 Score=38.20 Aligned_cols=81 Identities=26% Similarity=0.336 Sum_probs=55.8
Q ss_pred HHHhh-ccHHHHHHHHHHHHHHh----h----hhhhhhcchhhhHHHHhHHHHhH---------hHHhhHHHHHHHHHHH
Q 010055 56 YSRAR-MQKEEIHSLRQQIAVAC----L----KELQLQNEKYTLERKVSELRMAI---------DEKQNEAITSALNELA 117 (519)
Q Consensus 56 ~~k~r-~~eeEi~~Lr~~la~~s----~----kE~qll~EK~~LErria~lR~Af---------d~qQQdlVdAASKaLS 117 (519)
|.+++ .||.||..|++.+...- . =+.|.+.||.-||+-+.+++++- .++=|-|.-||-++|.
T Consensus 76 ~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~ 155 (206)
T PF14988_consen 76 FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLD 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44444 78999999998887522 1 25789999999999987777652 2233334444555543
Q ss_pred -HhhhhHhhhhhhhhhhhhh
Q 010055 118 -RRKGVLEENLKLAHDLKVA 136 (519)
Q Consensus 118 -yRQdiiEENiRLtyalq~a 136 (519)
+=++|-.||.+|.-+|.--
T Consensus 156 e~~~~i~~EN~~L~k~L~~l 175 (206)
T PF14988_consen 156 EFTRSIKRENQQLRKELLQL 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998776543
No 2
>PRK11637 AmiB activator; Provisional
Probab=80.22 E-value=34 Score=36.22 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHH-------------HHHHHHHHHHhhh
Q 010055 55 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKG 121 (519)
Q Consensus 55 l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdl-------------VdAASKaLSyRQd 121 (519)
+-.+.++.+++|..+.+.|.+..-+.-++.++...|+++|..+.-.++..|+++ |+.+-+.|..+++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666555555666666666666666666555554443 3334455666666
Q ss_pred hHhhhhhhhhh
Q 010055 122 VLEENLKLAHD 132 (519)
Q Consensus 122 iiEENiRLtya 132 (519)
.+.+=+|-.|.
T Consensus 125 ~l~~rlra~Y~ 135 (428)
T PRK11637 125 LLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHH
Confidence 66666776666
No 3
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=71.39 E-value=3.3 Score=46.62 Aligned_cols=32 Identities=34% Similarity=0.632 Sum_probs=27.9
Q ss_pred eecCCCCCceeeeccccCceEEEEEEecCCCC
Q 010055 353 YIEGATNPEYVVTADDVDKLIAVECIPMDDQG 384 (519)
Q Consensus 353 ~IeGA~~p~Y~vTADDVdtliAvec~PmDd~g 384 (519)
.|+=..+..|+.|+||||-.|-+||+|+|...
T Consensus 174 w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~ 205 (606)
T PLN03144 174 WIEVGRSKTYTPTADDVGHVLKFECVVVDAET 205 (606)
T ss_pred eEEeCCCccccCChhhCCceEEEEEEEccccc
Confidence 45655788999999999999999999998764
No 4
>PRK09239 chorismate mutase; Provisional
Probab=66.72 E-value=72 Score=28.36 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=58.4
Q ss_pred hhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhh
Q 010055 89 TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISN 168 (519)
Q Consensus 89 ~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs 168 (519)
-+...+.++|-.+|+-=..||+.-+|-+.+=+.|.+-...-...+-..+.|... +..+--+.+++||.|.+
T Consensus 7 ~~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~~i~dp~RE~~v-l~~~~~~a~~~gl~p~~-------- 77 (104)
T PRK09239 7 RAPAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEHGLPPADPAREAYQ-IERLRQLAKDANLDPDF-------- 77 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHCCCCHHH--------
Confidence 344556777777777666666654444444444443333322233334444444 35566777889999974
Q ss_pred hHHHHHHHHHHHHHhhhhhhcccc
Q 010055 169 TVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 169 ~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
++.+|+.+-+.....++++...+
T Consensus 78 -~~~i~~~ii~esir~q~~i~~~~ 100 (104)
T PRK09239 78 -AEKFLNFIIKEVIRHHERIAAEH 100 (104)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999888888888776655
No 5
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.03 E-value=86 Score=30.40 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHhhccHHHHHHHHHHHHHHhh--------hhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 010055 57 SRARMQKEEIHSLRQQIAVACL--------KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLK 128 (519)
Q Consensus 57 ~k~r~~eeEi~~Lr~~la~~s~--------kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiR 128 (519)
.++..-.++...|+.++.++-- .-.++..|...++.|++.+|....++++.+-+.=-+.-..|+.+-...-.
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666433 33455667777888888888888776665544433333333333333333
Q ss_pred hhhhhhhhhhhhHHHHHHH
Q 010055 129 LAHDLKVAEDERYFFMSSM 147 (519)
Q Consensus 129 Ltyalq~aeqEr~~fvssl 147 (519)
|. +.+...+++..++..+
T Consensus 107 l~-~~~~~~~~~~~~~~~~ 124 (302)
T PF10186_consen 107 LS-ASQDLVESRQEQLEEL 124 (302)
T ss_pred HH-HHHHHHHHHHHHHHHH
Confidence 44 3333334444444433
No 6
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=60.47 E-value=1.7e+02 Score=35.47 Aligned_cols=107 Identities=22% Similarity=0.257 Sum_probs=66.6
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Q 010055 57 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVA 136 (519)
Q Consensus 57 ~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~a 136 (519)
.++..++.++..-++-+...-.+.-.+..+|-.|+.+++.++-++.+.++++-.. .+++..+..=+|+.+.-.-+.+..
T Consensus 788 ~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~le~~~~~~~~~~~~ 866 (1201)
T PF12128_consen 788 KRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQL-QKEVKQRRKELEEELKALEEQLEQ 866 (1201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444545677788888888888888888777776543 344555555556665555554444
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCcccch
Q 010055 137 EDERYFFMSSMLGLLADYGLWPHVTNAS 164 (519)
Q Consensus 137 eqEr~~fvssllplLaEy~l~P~v~da~ 164 (519)
-++.-.-+..++.-|+++.+.|+..+++
T Consensus 867 ~~~~l~~l~~~~~~l~~~~~~~~~~~~~ 894 (1201)
T PF12128_consen 867 LEEQLRRLRDLLEKLAELSEPPNAEDAE 894 (1201)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCchhhh
Confidence 4454445556666668888888888887
No 7
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.59 E-value=46 Score=37.21 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=57.7
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhh--hhhhcchhhhHHHHhHHHHhHhHHhhHHHHHH------HHHHHHhhhhH
Q 010055 52 AMELYSRARMQKEEIHSLRQQIAVACLKE--LQLQNEKYTLERKVSELRMAIDEKQNEAITSA------LNELARRKGVL 123 (519)
Q Consensus 52 ~~~l~~k~r~~eeEi~~Lr~~la~~s~kE--~qll~EK~~LErria~lR~Afd~qQQdlVdAA------SKaLSyRQdii 123 (519)
...|..+.++.|+||..|.++|+.+.-.| .++..++..++++++.++-.+...++.+-..- -|.+...+...
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777899999999999999876533 24557778899999999999999888875332 23333333444
Q ss_pred hhhhhhhhhhhhhh
Q 010055 124 EENLKLAHDLKVAE 137 (519)
Q Consensus 124 EENiRLtyalq~ae 137 (519)
++|-++...+..|+
T Consensus 473 ~~~~~~~~~~~~~~ 486 (650)
T TIGR03185 473 INAFELERAITIAD 486 (650)
T ss_pred HhhhhHHHHHHHHH
Confidence 44444444443333
No 8
>PRK09039 hypothetical protein; Validated
Probab=58.89 E-value=79 Score=33.22 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=62.3
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhh-hhhhh
Q 010055 59 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHD-LKVAE 137 (519)
Q Consensus 59 ~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtya-lq~ae 137 (519)
+..+++|+..|..+|++-+.--.==.+....|+.+|+.||--|..-+ -+.+-+|.-+--.++ ...++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~------------~~r~~Le~~~~~~~~~~~~~~ 115 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAE------------AERSRLQALLAELAGAGAAAE 115 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhhhcchHH
Confidence 35788999999999998442211122344566777777776665211 111122221110011 00001
Q ss_pred hhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 138 DERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 138 qEr~~fvssllplLaEy-~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
....-.-.-|=-+.++| .-+|.|.-.++=+..+|.=-..|+..|...+.+.++.+
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111113344455566 36777766666666666666666666666666555554
No 9
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.30 E-value=58 Score=31.17 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=70.5
Q ss_pred cccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH----HHhHhHHhhHHHHHHHHHHHHhhh
Q 010055 46 SFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL----RMAIDEKQNEAITSALNELARRKG 121 (519)
Q Consensus 46 ~~~d~~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~l----R~Afd~qQQdlVdAASKaLSyRQd 121 (519)
.+.||+ .-|=.-+|+-+++|..+|+.+|.+.-.+.++-.+...+++.+..+ +.|...-..||.-.|. ..+++
T Consensus 20 ~~EDP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al---~~k~~ 95 (221)
T PF04012_consen 20 KAEDPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL---QRKAD 95 (221)
T ss_pred hhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHH
Confidence 356888 334456799999999999999988877777666666666555543 4555555555543332 22211
Q ss_pred hHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 122 VLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 122 iiEENiRLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
.- .+. .. +...+..+...+..+|.-++.|..||..+..|.....
T Consensus 96 ~e--------------~~~----~~---------l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 96 LE--------------EQA----ER---------LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HH--------------HHH----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 000 11 1123345566777777778888888877777654443
No 10
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.15 E-value=49 Score=37.11 Aligned_cols=90 Identities=26% Similarity=0.311 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhh
Q 010055 61 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDER 140 (519)
Q Consensus 61 ~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~aeqEr 140 (519)
.-.|++..|.||=|++..|=+++.+---.|++|| ||++.- |.|++ +-.|+|+..|+|.
T Consensus 359 ~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri--LRv~ik-----------------qeilr---~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 359 AIGERVTELQKHHADAVAKIEEAKNRHVELSHRI--LRVMIK-----------------QEILR---KRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHH-----------------HHHHh---ccCCcCCccHHHH
Confidence 3344445555555666666666666556666666 444331 22332 3578999999998
Q ss_pred HHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhh
Q 010055 141 YFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSY 185 (519)
Q Consensus 141 ~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e 185 (519)
..=...||.-| + +. +-+|.=...|.|.++.-+
T Consensus 417 r~Kldtll~~l---n-------~P---nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 417 RAKLDTLLAQL---N-------AP---NQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHh---c-------Ch---HHHHHHHHHHHHHHHhhc
Confidence 77666655433 2 22 677777777777776553
No 11
>PLN02939 transferase, transferring glycosyl groups
Probab=57.10 E-value=1.6e+02 Score=35.59 Aligned_cols=99 Identities=25% Similarity=0.370 Sum_probs=62.8
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhhhh-hhcchhhhHHHHh--HHHHhHhHHhhH---------------------
Q 010055 52 AMELYSRARMQKEEIHSLRQQIAVACLKELQ-LQNEKYTLERKVS--ELRMAIDEKQNE--------------------- 107 (519)
Q Consensus 52 ~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~q-ll~EK~~LErria--~lR~Afd~qQQd--------------------- 107 (519)
-.||.--++.-|.-|+.|-+ ...-.+.+++ ||+||..|.++|. +||+|=-..+-.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (977)
T PLN02939 130 LEDLVGMIQNAEKNILLLNQ-ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRN 208 (977)
T ss_pred HHHHHHHHHHHHhhhHhHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhh
Confidence 35787888888888876643 3334455554 8999999988875 556654211110
Q ss_pred -----------HHHHHHHHHHHhhhhHhhhhhhhhhhhh-----------------hhhhhHHHHHHHHHHhhhc
Q 010055 108 -----------AITSALNELARRKGVLEENLKLAHDLKV-----------------AEDERYFFMSSMLGLLADY 154 (519)
Q Consensus 108 -----------lVdAASKaLSyRQdiiEENiRLtyalq~-----------------aeqEr~~fvssllplLaEy 154 (519)
-|.+-+++|. .+-|||+-|--+++. .+.||+..-+||-.|=+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 209 ELLIRGATEGLCVHSLSKELD---VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred hhhccccccccccccHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112245554 245899999988876 4566777777777665554
No 12
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.87 E-value=18 Score=38.66 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=51.5
Q ss_pred ccCCCCCCcccceeecccCCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecC
Q 010055 302 SISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMD 381 (519)
Q Consensus 302 a~~dplp~i~glqI~Gda~pG~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmD 381 (519)
.--.|.||.+|..+.|+.+|...-.-.-+. .++.-.+..+|=.+++|
T Consensus 117 ~~~p~~~G~~G~~V~G~~I~~~~~~~~~~~--------------------------~g~~~~~~~~d~~~~~A------- 163 (451)
T PF03961_consen 117 EKIPPTPGEPGRDVFGEPIPAKPGKDIPLK--------------------------AGKNTEVSEEDGNKLYA------- 163 (451)
T ss_pred EEccCCCCCCCcccCCCCcCCCCCCcccee--------------------------CCCCEEEEcCCCCEEEE-------
Confidence 444578999999999999987654322111 12333344344444443
Q ss_pred CCCcccceeeeecccCCccccCccchHHHHHHHHhcceEEEEEe
Q 010055 382 DQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLM 425 (519)
Q Consensus 382 d~grkGElVk~~ANd~~kI~cDpeMq~~I~~~l~~G~Asf~V~l 425 (519)
...|-++. +++.|..+|.+.=. +--+++|+..|.=.+
T Consensus 164 --~~~G~~~~----~~~~i~V~~~l~i~-dVd~~TGnI~f~G~V 200 (451)
T PF03961_consen 164 --AIDGRPVF----ENGKISVDPVLEIN-DVDYSTGNIDFDGDV 200 (451)
T ss_pred --ecCCEEEE----ECCEEEEEEeeEeC-CCCCCCCCEeeeEEE
Confidence 23444444 45557777777766 777888999986433
No 13
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=54.23 E-value=27 Score=34.50 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=39.4
Q ss_pred hhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 134 KVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 134 q~aeqEr~~fvssllplLaEy-~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
|.||.|.+-+.+.|+=+-.-| +|.-. ..|..||.+|..||.++.-..
T Consensus 91 ~~aq~~Ls~~L~rl~a~~E~YPdLKAn------------~~f~~Lq~ql~~tEn~Ia~aR 138 (185)
T COG1704 91 QEAQAELSSALGRLFAVAEAYPDLKAN------------ENFLELQSQLEGTENRIAVAR 138 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhh------------hHHHHHHHHHHhHHHHHHHHH
Confidence 778889999999999888888 66533 469999999999999987666
No 14
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.17 E-value=1.3e+02 Score=34.14 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcc--------hhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhh--hhhh--
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNE--------KYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN--LKLA-- 130 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~E--------K~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEEN--iRLt-- 130 (519)
+++|..||++|.++-.+=.+...+ .-..+.++++|.-..-.-|.++++|.++.-..|..+-.-+ .-+.
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~ 279 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEV 279 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh
Confidence 455667777776654332222221 1223588888887777777777776666555444332111 0000
Q ss_pred --------hhhhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHH
Q 010055 131 --------HDLKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVK 171 (519)
Q Consensus 131 --------yalq~aeqEr~~fvssllplLaEy-~l~P~v~da~sIvs~vK 171 (519)
=.++...+++.-.-+-+--|...| .-||.|.++.+=...++
T Consensus 280 ~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 280 LSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLD 329 (754)
T ss_pred hcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 112222333333334444566778 67888877544333333
No 15
>PRK14153 heat shock protein GrpE; Provisional
Probab=49.95 E-value=1.8e+02 Score=28.82 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcC--CC--CCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--LW--PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~--l~--P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.+-.+. |. +.-.+..+|+.+|+.++++|..-|. ...|+++. ..| ..++|+.|+..
T Consensus 83 ~~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvemi~k~~~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 150 (194)
T PRK14153 83 EQVLLDLLEVTDNFERALESARTAEDMNSIVEGIEMVSKQFFSILE--KYGLERIE-CEG-----EEFDPHRHEAM 150 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH--HCCCeeeC-CCC-----CCCChhHhcee
Confidence 468889999887762 22 2224567899999999999998885 55556655 113 24667666543
No 16
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.45 E-value=1.8e+02 Score=34.10 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=76.9
Q ss_pred hhhhcchhhhHHHHhHHHHhHhHHhhHH-------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 010055 81 LQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSM 147 (519)
Q Consensus 81 ~qll~EK~~LErria~lR~Afd~qQQdl-------------VdAASKaLSyRQdiiEENiRLtyalq~aeqEr~~fvssl 147 (519)
--|++||++|+..|+.|--+.|-.++.+ +..-+|.|--++..||.+=|.+=++.---...-.++...
T Consensus 499 k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 499 KLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999998887777655443 344567788888888888776655544333334444433
Q ss_pred HHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 148 LGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 148 lplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
=.-|. .+++.+.+...=+...+--.+||++++..+..||....
T Consensus 579 ~~~le--~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 579 EAKLE--QIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333 46777777777777777778899999999998887776
No 17
>PRK10698 phage shock protein PspA; Provisional
Probab=46.22 E-value=1.8e+02 Score=28.92 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=43.7
Q ss_pred ccchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHH--------HHHHHHH
Q 010055 47 FQDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAIT--------SALNELA 117 (519)
Q Consensus 47 ~~d~~-~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVd--------AASKaLS 117 (519)
..||+ ..++ -+++-++.+..+|+-+|.+-..+ ..|||++..+....+..+.-+-- =|-+||.
T Consensus 22 aEDP~k~l~q--~i~em~~~l~~~r~alA~~~A~~-------k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~ 92 (222)
T PRK10698 22 AEDPQKLVRL--MIQEMEDTLVEVRSTSARALAEK-------KQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALI 92 (222)
T ss_pred hcCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46888 4444 46888899999999888766554 44555555554444444333322 2456677
Q ss_pred HhhhhHhhhhh
Q 010055 118 RRKGVLEENLK 128 (519)
Q Consensus 118 yRQdiiEENiR 128 (519)
.++..-+.-=.
T Consensus 93 ~K~~~~~~~~~ 103 (222)
T PRK10698 93 EKQKLTDLIAT 103 (222)
T ss_pred HHHHHHHHHHH
Confidence 77666544333
No 18
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.68 E-value=1.3e+02 Score=34.13 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=38.2
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHh
Q 010055 57 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 102 (519)
Q Consensus 57 ~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd 102 (519)
+|.|| ++||..|=.|||+|.=|=-+|=.|...||-.|-.||-+|-
T Consensus 36 sR~rE-K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~ 80 (546)
T KOG0977|consen 36 SRERE-KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG 80 (546)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34443 4789999999999999999999999999999998887664
No 19
>PF15294 Leu_zip: Leucine zipper
Probab=42.97 E-value=2.6e+02 Score=29.43 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=35.4
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHH
Q 010055 59 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 99 (519)
Q Consensus 59 ~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~ 99 (519)
++.-.+|...||.+|...--.=...+.||..|++.+.+||.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999998888888889999999999999998
No 20
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.82 E-value=2.8e+02 Score=31.07 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=33.2
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHH
Q 010055 60 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELA 117 (519)
Q Consensus 60 r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLS 117 (519)
.+.++++..++.+|...--....+..+...|+.++...|-+..+|++ +...|.+.|+
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~-~l~~~~~~L~ 112 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR-QMINSEQRLS 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34444555555555555545555566666778888888888766554 3444444443
No 21
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=41.64 E-value=2e+02 Score=25.18 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=51.0
Q ss_pred HHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhh--hhhhhhhhhhHHH-HHHHHHHhhhcCCCCCcccchhhhhh
Q 010055 93 KVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLA--HDLKVAEDERYFF-MSSMLGLLADYGLWPHVTNASAISNT 169 (519)
Q Consensus 93 ria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLt--yalq~aeqEr~~f-vssllplLaEy~l~P~v~da~sIvs~ 169 (519)
+++++|-.+|+-=..||+- |+.|..+..+--++- ..+-+-+.+|-.- +..+.-+..++||.|.+
T Consensus 4 ~L~~lR~~ID~ID~qLv~L----L~~R~~~~~~ia~~K~~~~~~v~dp~Re~~vl~~~~~~a~~~gl~p~~--------- 70 (94)
T TIGR01795 4 ELKALRQSIDNIDAAVIHM----LAERFKCTSQVGVLKANAGLAPADPAREDYQIARLRRLAIDAGLDPEF--------- 70 (94)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH---------
Confidence 5667777777666666654 444555444443332 2333344444332 35678888999999985
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 010055 170 VKHLYDQLQSQIRTSYDRI 188 (519)
Q Consensus 170 vK~L~~~Lq~kl~~~e~kl 188 (519)
+..||+.+.+.....++++
T Consensus 71 ~e~i~~~i~~esir~q~~~ 89 (94)
T TIGR01795 71 AEKFLNFIVTEVIKHHERI 89 (94)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678888888777666553
No 22
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.60 E-value=54 Score=28.25 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=28.4
Q ss_pred hhhhHHHHhHH--HHhHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 010055 87 KYTLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLEEN 126 (519)
Q Consensus 87 K~~LErria~l--R~Afd~qQQdlVdAASKaLSyRQdiiEEN 126 (519)
...||+||.+| |+|| |.+.|+.-|-+|..-|-+|+.+
T Consensus 3 ~~~lE~Ri~eLE~r~Af---QE~tieeLn~~laEq~~~i~k~ 41 (72)
T COG2900 3 DMELEARIIELEIRLAF---QEQTIEELNDALAEQQLVIDKL 41 (72)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999865 8888 6678888888888777777654
No 23
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=41.30 E-value=59 Score=25.38 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHh
Q 010055 64 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 105 (519)
Q Consensus 64 eEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQ 105 (519)
|.|..+|..|-+| |...=..|-.+||+-+.+|+-.|++||
T Consensus 3 eQi~~I~~~I~qA--k~~~r~dEV~~L~~NL~EL~~e~~~qq 42 (42)
T PF11464_consen 3 EQINIIESYIKQA--KAARRFDEVATLEENLRELQDEIDEQQ 42 (42)
T ss_dssp HHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5677888888876 667778999999999999999999987
No 24
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=41.13 E-value=43 Score=32.19 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=40.3
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010055 430 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 483 (519)
Q Consensus 430 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~G------~~~qfvI~~sdG 483 (519)
.+.|+ ..|-|.=-||.+...++.+.|.==||-...+.||.| .+++.+|.+.|-
T Consensus 80 t~Gf~-~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dk 138 (178)
T CHL00140 80 SEGFE-KKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDK 138 (178)
T ss_pred ccCce-EEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 46666 778888888999998777888777888899999977 345566666654
No 25
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.61 E-value=2.9e+02 Score=26.98 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=35.0
Q ss_pred cccchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHH
Q 010055 46 SFQDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA 108 (519)
Q Consensus 46 ~~~d~~-~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdl 108 (519)
...||+ ..+. -+|+-++.|...|+-||.+...+ ..|||+++.++.-....++.+
T Consensus 21 k~EDP~~~l~q--~irem~~~l~~ar~~lA~~~a~~-------k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 21 KAEDPEKMIRL--IIQEMEDTLVEVRTTSARTIADK-------KELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred hccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 356888 4444 46788889999999998776554 455666665555444444433
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.59 E-value=5.7e+02 Score=28.46 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=52.0
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhh
Q 010055 58 RARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAE 137 (519)
Q Consensus 58 k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~ae 137 (519)
+.+.-..||..+.+.|+...=+=.+|..+--.||+.|+.++=+ |+..+..-=.-+++|-+=|=+| -+|++.+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~q-------l~~s~~~l~~~~~~I~~~~~~l-~~l~~q~ 110 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQ-------LIETADDLKKLRKQIADLNARL-NALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHhhHHHHHHHH-HHHHHHH
Confidence 3444455566666666555544445555555555555544433 3333322222223332222222 3677777
Q ss_pred hhhHHHHHHHHHHhhhcCCCCC
Q 010055 138 DERYFFMSSMLGLLADYGLWPH 159 (519)
Q Consensus 138 qEr~~fvssllplLaEy~l~P~ 159 (519)
.|+.-+++-+|--+--.+..||
T Consensus 111 r~qr~~La~~L~A~~r~g~~p~ 132 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCCC
Confidence 8888899999888888888885
No 27
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.80 E-value=3.8e+02 Score=26.65 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhc----CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADY----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy----~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.+-.+ +.-+.-.+..+|+.+|+..+++|..=|. ..-|+++. +.| ..|+|+.|+--
T Consensus 90 ~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 157 (195)
T PRK14148 90 EKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKMLVDILK--KNGVEELD-PKG-----EKFDPNLHEAM 157 (195)
T ss_pred HHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhee
Confidence 45888899988777 2233334567899999999999988885 44555554 112 23667766543
No 28
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=35.97 E-value=1.3e+02 Score=23.38 Aligned_cols=50 Identities=36% Similarity=0.302 Sum_probs=36.0
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHh
Q 010055 53 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 102 (519)
Q Consensus 53 ~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd 102 (519)
.++..++...|++|..+...+.+++++.++-.+....++.=+..|+++.+
T Consensus 24 ~~~a~~i~~~e~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 73 (88)
T PF01895_consen 24 SELAQEIIQLEEEIDELYREIRRQILKILKNQNPLEELRELVGLLRIARD 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 35668888999999999999999998888544443335555666666543
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.79 E-value=2.3e+02 Score=29.10 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHH
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYF 142 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~aeqEr~~ 142 (519)
+.|+..+++.+.+.=+.=--|-+++.-+|-.|.++|==.+.-+..+ ++++++=-|+. |..+++.|++.+..
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~a--------L~~E~~~ak~r~~~ 107 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRA--------LNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH--------HHHHHHHHHHHHHH
Confidence 4455666666666555555566677777777777765544444444 66666555553 77778888888888
Q ss_pred HHHHHHHHhhhc
Q 010055 143 FMSSMLGLLADY 154 (519)
Q Consensus 143 fvssllplLaEy 154 (519)
..+.|.+|+-++
T Consensus 108 le~el~~l~~~~ 119 (239)
T COG1579 108 LEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHH
Confidence 888888887776
No 30
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.68 E-value=4.2e+02 Score=25.75 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=7.6
Q ss_pred hHHHHhHHHHhHhHHhhH
Q 010055 90 LERKVSELRMAIDEKQNE 107 (519)
Q Consensus 90 LErria~lR~Afd~qQQd 107 (519)
+-++++++|-+.....+.
T Consensus 89 ~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 89 KRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 31
>PRK14149 heat shock protein GrpE; Provisional
Probab=34.16 E-value=3e+02 Score=27.35 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcC----CCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG----LWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~----l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.|-.+. .-+...+..+|+.+|+..+++|..-|. ..-|+++. | .| .|+|+.|+.-
T Consensus 86 ~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~GV~~I~--~---~G--~FDP~~HEAv 152 (191)
T PRK14149 86 EKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLA--RHGIEGIE--C---LE--EFDPNFHNAI 152 (191)
T ss_pred HHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhhee
Confidence 458889999988772 223334567899999999999988775 33445443 2 23 3888877644
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.16 E-value=5.3e+02 Score=31.91 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=88.3
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhH---------
Q 010055 53 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVL--------- 123 (519)
Q Consensus 53 ~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdii--------- 123 (519)
.+|+..++..++||......+-...-+.-+|..|+.-++...+.+|.++- ++++..|++=-+|.-|++-+
T Consensus 737 ~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~-~e~~~l~~l~~el~~r~dk~~s~e~~~~H 815 (1074)
T KOG0250|consen 737 EDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ-GEISKLDALKEELKLREDKLRSAEDEKRH 815 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Confidence 57788888899999988888888888889999999999999999999984 55667788888888887755
Q ss_pred -hhhhh-hhhhhhhhhhhhHHHHHHHHHH-------hhhcCCCC-CcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 124 -EENLK-LAHDLKVAEDERYFFMSSMLGL-------LADYGLWP-HVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 124 -EENiR-Ltyalq~aeqEr~~fvssllpl-------LaEy~l~P-~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
|++++ -.-++.-+|-|.. ..=.|+ ++++-=.| -+..-+--+.-+|.--+.|+.+++-.++.+.+++
T Consensus 816 yE~~~K~~l~~l~~~E~~~~---~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~ 891 (1074)
T KOG0250|consen 816 YEDKLKSRLEELKQKEVEKV---NLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELE 891 (1074)
T ss_pred HHHHHHHhhHHHHHHHHHHH---hhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 44555 2223333332221 111222 12211111 1111111355667777778888877777776666
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.95 E-value=1.9e+02 Score=33.60 Aligned_cols=67 Identities=33% Similarity=0.419 Sum_probs=45.5
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhH--hHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 010055 55 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAI--DEKQNEAITSALNELARRKGVLEENLK 128 (519)
Q Consensus 55 l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Af--d~qQQdlVdAASKaLSyRQdiiEENiR 128 (519)
+=.|.++.|.||.+||..|. .||-| +..||..+.+||+.- +++-.+..=+|+-||--+-.+||+|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk---~kee~----~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK---QKEEQ----IRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55577788888888887554 34543 467888888898852 244456666777777766667777654
No 34
>PRK14154 heat shock protein GrpE; Provisional
Probab=33.34 E-value=4.6e+02 Score=26.43 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhcC--CC--C-CcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--LW--P-HVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~--l~--P-~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.+-.+. |. + .-.+..+|+.+|+..+++|..-|. ..-|+++.-.+| ..|+|+.|+-.
T Consensus 102 e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~--k~GVe~I~~~~G-----~~FDP~~HEAv 171 (208)
T PRK14154 102 KQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLA--KHGVQVINPNPG-----DPFDPALHEAM 171 (208)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEecCCCC-----CCCChhHhhee
Confidence 457888999887762 22 1 123457899999999999988885 555666652233 24666666543
No 35
>PRK14162 heat shock protein GrpE; Provisional
Probab=33.33 E-value=4.8e+02 Score=25.92 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~--l--~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.+--+. | -|.-.+..+|+.+|+..+++|..=|. ..-|+++. ..| ..++|+.|+--
T Consensus 89 ~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~vL~--~~GV~~I~-~~G-----~~FDP~~HEAv 156 (194)
T PRK14162 89 QSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVKALK--DHGVTEIK-ADG-----EKFDPTLHQAV 156 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhhh
Confidence 358889999887773 2 23323457899999999999988885 44555554 122 23667666544
No 36
>PRK02119 hypothetical protein; Provisional
Probab=33.23 E-value=93 Score=26.18 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=27.4
Q ss_pred cchhhhHHHHhHH--HHhHhHHhhHHHHHHHHHHHHhhhhHh
Q 010055 85 NEKYTLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 124 (519)
Q Consensus 85 ~EK~~LErria~l--R~Afd~qQQdlVdAASKaLSyRQdiiE 124 (519)
+|-..+|.||.+| |+|| |.+.|+.=++++..=|..|.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~---QE~tie~LN~~v~~Qq~~id 40 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAF---QENLLEELNQALIEQQFVID 40 (73)
T ss_pred cchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455688888865 6776 88899999998887775553
No 37
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=33.16 E-value=3.8e+02 Score=26.28 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhc----CCCCCcccc-hhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 142 FFMSSMLGLLADY----GLWPHVTNA-SAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 142 ~fvssllplLaEy----~l~P~v~da-~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
-|+.-|||.+--+ +..+.-.|. ++|..+|..++++|..-|. ..-|+++.. .| ..++|+.|+-.
T Consensus 87 ~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~--k~Gv~~i~~-~G-----e~FDP~~HeAv 154 (193)
T COG0576 87 KFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALE--KLGVEEIGP-EG-----EKFDPNLHEAV 154 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH--HCCCEEeCC-CC-----CCCCHHHhhhe
Confidence 4788899988655 333443443 4799999999999988885 345556552 33 35777777644
No 38
>PRK14140 heat shock protein GrpE; Provisional
Probab=33.10 E-value=5e+02 Score=25.76 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 140 RYFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 140 r~~fvssllplLaEy~--l--~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
..-|+..|||.|--+. | -|.-.+..+|+.+|+..+++|..=|. .--++.+. ..| ..++|+.|+.-
T Consensus 86 ~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~~L~--k~GV~~i~-~~G-----e~FDP~~HEAv 154 (191)
T PRK14140 86 AQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLEALK--KEGVEVIE-AVG-----EQFDPNLHQAV 154 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHH--HCCCEeeC-CCC-----CCCChHHhccc
Confidence 3468889999987662 2 24444567889999999988887774 23333332 112 24777777644
No 39
>PRK02793 phi X174 lysis protein; Provisional
Probab=33.01 E-value=1e+02 Score=25.86 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.2
Q ss_pred hhHHHHhHH--HHhHhHHhhHHHHHHHHHHHHhhhhHh
Q 010055 89 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 124 (519)
Q Consensus 89 ~LErria~l--R~Afd~qQQdlVdAASKaLSyRQdiiE 124 (519)
.+|.||.+| |+|| |++.|+.=++++..=|..|.
T Consensus 5 ~~e~Ri~~LE~~laf---Qe~tIe~Ln~~v~~Qq~~I~ 39 (72)
T PRK02793 5 SLEARLAELESRLAF---QEITIEELNVTVTAHEMEMA 39 (72)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 377787764 6776 88899999999988775553
No 40
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.85 E-value=1.7e+02 Score=32.92 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=30.9
Q ss_pred cccCccchHHHH-HHHHhcceEEEEEeecCccccccceEE-EEe---ecceEEEeCC--Ccceeeeec
Q 010055 400 IKCDLGMQSEID-AYISRGHATFSVLMLMDSSENWEQATL-ILR---RSIYRIKIDS--TEAIIEERF 460 (519)
Q Consensus 400 I~cDpeMq~~I~-~~l~~G~Asf~V~ll~~~~d~wE~atL-~Ir---RegY~IK~~~--~~~~I~EKf 460 (519)
-..|++-+..|= .++.. ++-+|-+++.. ..|..-+. .|+ -..|.|..+. +..+|++.|
T Consensus 585 ~~lD~~~r~~l~~~~~~~--~~~QvIils~d-~e~~~~~~~~l~~~i~~~y~l~y~~~~~~t~i~~gY 649 (650)
T TIGR03185 585 GRLDSSHRENLVVNYFPK--ASHQVLLLSTD-EEVDEKHYNLLKPNISHEYLLEFDDEARTSVVTEGY 649 (650)
T ss_pred cccChHHHHHHHHHHhhc--cCCeEEEEech-HhhCHHHHHHHHHHhhhheEEEecCCcCceeecCCC
Confidence 457887777753 56654 46777777542 23333211 111 1137777774 445666655
No 41
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.82 E-value=2.2e+02 Score=31.31 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=45.5
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcch-----------hhhHHHHhHHHHhHhHHhhHHHHHHHH
Q 010055 51 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK-----------YTLERKVSELRMAIDEKQNEAITSALN 114 (519)
Q Consensus 51 ~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK-----------~~LErria~lR~Afd~qQQdlVdAASK 114 (519)
+...|=.+..+.++|+..||.+|.++=-.+.+++... ..|..|+..+..|+...+.+++.+...
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~ 184 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVE 184 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 5556656677899999999999999822222222211 678888899999998888887776544
No 42
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.51 E-value=3.8e+02 Score=26.60 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhcC--CC-CCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--LW-PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 211 (519)
Q Consensus 141 ~~fvssllplLaEy~--l~-P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~ 211 (519)
.-|+-.|||.+-.+. |. ....+..+|+.+|+..+++|..-|. ..-|+++.-..| ..|+|+.|+-
T Consensus 90 ~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~vLe--k~Gv~~I~~~~G-----~~FDP~~HEA 156 (194)
T PRK14158 90 ESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLK--KFGVTPVEAEKG-----TPFDPAYHQA 156 (194)
T ss_pred HHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH--HCCCEEecCCCC-----CCCChHHhhh
Confidence 347777888876662 21 1123457899999999999998885 345555541123 2366766653
No 43
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.82 E-value=1.9e+02 Score=30.76 Aligned_cols=48 Identities=31% Similarity=0.275 Sum_probs=38.4
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhH
Q 010055 60 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 107 (519)
Q Consensus 60 r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQd 107 (519)
..|.|||.+|..+|++.--|.-|+-.|+..|=..+...+.+=.+-|-+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999998888887776554443333
No 44
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=29.79 E-value=39 Score=29.98 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.1
Q ss_pred HhhccHHHHHHHHHHHHHH
Q 010055 58 RARMQKEEIHSLRQQIAVA 76 (519)
Q Consensus 58 k~r~~eeEi~~Lr~~la~~ 76 (519)
-+|.||+-+...|+|||+|
T Consensus 77 DIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 77 DIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999987
No 45
>PRK11281 hypothetical protein; Provisional
Probab=29.32 E-value=2.8e+02 Score=34.06 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=61.0
Q ss_pred hhHHHHhHHHHhHhHH--hhH-H------H----------------HHHHHHHHHhhhhHhhhhh-------hhhhhhhh
Q 010055 89 TLERKVSELRMAIDEK--QNE-A------I----------------TSALNELARRKGVLEENLK-------LAHDLKVA 136 (519)
Q Consensus 89 ~LErria~lR~Afd~q--QQd-l------V----------------dAASKaLSyRQdiiEENiR-------Ltyalq~a 136 (519)
.|.++||++|+.--+- |+| | + ++..+-|.-|+++|++=++ +.=.||.+
T Consensus 357 ~l~~~iAdlrl~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~ 436 (1113)
T PRK11281 357 GLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLN 436 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999763322 221 1 1 2344678889999988443 55578889
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCcccchhh--------hhhHHHHHHHHHHHH
Q 010055 137 EDERYFFMSSMLGLLADYGLWPHVTNASAI--------SNTVKHLYDQLQSQI 181 (519)
Q Consensus 137 eqEr~~fvssllplLaEy~l~P~v~da~sI--------vs~vK~L~~~Lq~kl 181 (519)
+++...-+.+|=-.|.|.-+|=+ ++..| -..+|.+++.+.|+.
T Consensus 437 q~Ql~~~~~~l~~~L~~~lfWv~--s~~pid~~w~~~~p~~~~~~~~~~~~~~ 487 (1113)
T PRK11281 437 QQQLLSVSDSLQSTLTQQIFWVN--SNKPMDLDWLKAFPQALKDQFKSLKITV 487 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhccC--CCCCcCHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999955 33333 344555555554443
No 46
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.74 E-value=4.5e+02 Score=25.91 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhcC--CCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--LWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~--l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.+-.+. |.=.-.+..+|+.+|+..+++|..-|. ..-|+++. ..| ..|+|+.|+-.
T Consensus 82 ~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~-~~G-----~~FDP~~HEAv 147 (185)
T PRK14139 82 ESFAESLLPVKDSLEAALADESGDLEKLREGVELTLKQLTSAFE--KGRVVEIN-PVG-----EKFDPHQHQAI 147 (185)
T ss_pred HHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH--HCCCceeC-CCC-----CCCChHHhhee
Confidence 357888899887762 211113557899999999999988775 44555555 223 24667666543
No 47
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.34 E-value=2.7e+02 Score=25.98 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 010055 174 YDQLQSQI 181 (519)
Q Consensus 174 ~~~Lq~kl 181 (519)
+++|++++
T Consensus 174 ~~~l~~~~ 181 (191)
T PF04156_consen 174 LQQLEEKI 181 (191)
T ss_pred HHHHHHHH
Confidence 33444443
No 48
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=28.16 E-value=43 Score=38.38 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=50.1
Q ss_pred CCCCCCCcccccccccccc-----ccCCccccCCCCccc----cchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhh
Q 010055 14 HRFQAKNSDFVNSRHKIET-----HLAPTKQKEDNFISF----QDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQ 84 (519)
Q Consensus 14 ~~~~~~~s~~~~~r~~~e~-----~~~~~~~~~~~~~~~----~d~~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll 84 (519)
||-+...|+.. ||+++. -++-++..+++..+| |.|---.| -.||++...||.|-+|+.
T Consensus 549 GRYvvT~ss~w--rhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~-----LS~e~~KkIkKnLKky~a------ 615 (698)
T KOG2314|consen 549 GRYVVTSSSSW--RHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSL-----LSEEKQKKIKKNLKKYSA------ 615 (698)
T ss_pred CCEEEEeeehh--hhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCcc-----cCHHHHHHHHHHHHHHHH------
Confidence 44444444433 788776 345555555554443 55542222 367889999999999986
Q ss_pred cchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhh
Q 010055 85 NEKYTLERKVSELRMAIDEKQNEAITSALNELARRK 120 (519)
Q Consensus 85 ~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQ 120 (519)
+|+||-..--+.|||+|.-|+
T Consensus 616 ---------------~FeeqD~~e~~~AsrElvekr 636 (698)
T KOG2314|consen 616 ---------------QFEEQDRLEQSRASRELVEKR 636 (698)
T ss_pred ---------------HHhhhhhHhhhhhHHHHHHHH
Confidence 567666666778888876544
No 49
>PRK00295 hypothetical protein; Provisional
Probab=28.07 E-value=1.4e+02 Score=24.79 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=21.3
Q ss_pred hHHHHhHH--HHhHhHHhhHHHHHHHHHHHHhhhhH
Q 010055 90 LERKVSEL--RMAIDEKQNEAITSALNELARRKGVL 123 (519)
Q Consensus 90 LErria~l--R~Afd~qQQdlVdAASKaLSyRQdii 123 (519)
+|.||.+| |+|| |++.|+.=++++..=|..|
T Consensus 3 ~e~Ri~~LE~kla~---qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 3 LEERVTELESRQAF---QDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 55666654 5666 7788888888887777444
No 50
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=27.52 E-value=85 Score=33.04 Aligned_cols=77 Identities=25% Similarity=0.525 Sum_probs=55.7
Q ss_pred CCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccceeeeec-ccCC
Q 010055 320 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 398 (519)
Q Consensus 320 ~pG~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmDd~grkGElVk~~A-Nd~~ 398 (519)
-||+++.|.||-+-|.+... |=.+.+|...+.=....-+|++|-+++- +|- ++ ++|+ |+++
T Consensus 145 q~G~~~vaAgy~~YG~~t~l---v~t~g~gv~~ftld~~~g~f~l~~~~i~-------ip~--~~------~~ys~n~~n 206 (327)
T PRK09293 145 QPGNNQVAAGYVLYGPSTML---VLTTGDGVHGFTLDPSLGEFVLTHENIR-------IPE--DG------KEYAINEGN 206 (327)
T ss_pred CCchhheeEEEEEEcCceEE---EEEeCCCEEEEEEeCCCCeEEEecCCce-------eCC--CC------CEEccCchh
Confidence 39999999999998876543 2334677666655555567888877653 232 22 6899 8888
Q ss_pred ccccCccchHHHHHHHH
Q 010055 399 KIKCDLGMQSEIDAYIS 415 (519)
Q Consensus 399 kI~cDpeMq~~I~~~l~ 415 (519)
-=.+|+.+|+-| .++.
T Consensus 207 ~~~w~~~~~~yi-~~~~ 222 (327)
T PRK09293 207 QRHWEPGVKKYI-ELLA 222 (327)
T ss_pred hhhcCHHHHHHH-HHhc
Confidence 889999999999 5553
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.33 E-value=5.8e+02 Score=29.64 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=13.2
Q ss_pred cccCccchHHHHHHHHh
Q 010055 400 IKCDLGMQSEIDAYISR 416 (519)
Q Consensus 400 I~cDpeMq~~I~~~l~~ 416 (519)
|.||++....|+..+.+
T Consensus 606 i~~~~~~~~~~~~~lg~ 622 (1164)
T TIGR02169 606 VEFDPKYEPAFKYVFGD 622 (1164)
T ss_pred ccCcHHHHHHHHHHCCC
Confidence 78998888888776654
No 52
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17 E-value=2.3e+02 Score=32.66 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=80.6
Q ss_pred cccccc-ccCCccccCCCCccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHh
Q 010055 27 RHKIET-HLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 105 (519)
Q Consensus 27 r~~~e~-~~~~~~~~~~~~~~~~d~~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQ 105 (519)
||.+=- ++..++...+ .+|++..| +|||..|-|+|--+..|..||| |+||.--=
T Consensus 234 Rye~w~~El~k~krs~d-----e~p~netL-------k~e~dr~~kklk~~~~KQeqLL-------------rva~ylLl 288 (791)
T KOG1222|consen 234 RYEFWIAELKKTKRSTD-----EKPKNETL-------KEEIDRLNKKLKTAIRKQEQLL-------------RVAVYLLL 288 (791)
T ss_pred HHHHHHHHHhhhhcccc-----cCcchhhH-------HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 554432 4444443322 57776666 7999999999999999999985 44554322
Q ss_pred hHHHHHHHHHHHHhh-hhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHH
Q 010055 106 NEAITSALNELARRK-GVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQ 180 (519)
Q Consensus 106 QdlVdAASKaLSyRQ-diiEENiRLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~k 180 (519)
+ |..-.+-+|.-|. +|.- -|--||+..--+..+.|++.|--|+=|+=---++-+--||.-+-.||.-=...
T Consensus 289 N-lAed~~~ElKMrrkniV~---mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 289 N-LAEDISVELKMRRKNIVA---MLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred H-HhhhhhHHHHHHHHhHHH---HHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 2 2222333343332 2221 35556666667888999999999988877777787888888777777543333
No 53
>PLN02542 fructose-1,6-bisphosphatase
Probab=27.08 E-value=94 Score=34.13 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=56.9
Q ss_pred CCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccceeeeec-ccCC
Q 010055 320 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 398 (519)
Q Consensus 320 ~pG~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmDd~grkGElVk~~A-Nd~~ 398 (519)
-||+++.|.||-+-|.+.-. |=.+.+|...+.=....=+|++|.+++ . +|- + =++|+ |++|
T Consensus 234 qpG~~qvAAGY~lYGpsT~L---Vlt~G~GV~~FtLDp~~geFvLt~~~i------~-IP~--~------g~iySiN~~N 295 (412)
T PLN02542 234 QPGSNLLAAGYCMYSSSVIF---VLTIGTGVFSFTLDPMYGEFVLTQENI------Q-IPK--A------GKIYSFNEGN 295 (412)
T ss_pred CcchhhhEEEEEEEccceEE---EEEECCCEEEEEEcCCCCeEEEeCCCe------e-eCC--C------CcEeeeCccc
Confidence 39999999999998865322 223467777666444555788887775 1 222 2 26788 7788
Q ss_pred ccccCccchHHHHHHHHhc
Q 010055 399 KIKCDLGMQSEIDAYISRG 417 (519)
Q Consensus 399 kI~cDpeMq~~I~~~l~~G 417 (519)
-=.+|+.+|.-|+.....|
T Consensus 296 ~~~W~~~~~~yi~~~~~~~ 314 (412)
T PLN02542 296 YQLWDDKLKKYIDDLKDPG 314 (412)
T ss_pred ccccCHHHHHHHHHHhhCC
Confidence 8889999999999998644
No 54
>PRK11281 hypothetical protein; Provisional
Probab=27.00 E-value=1.7e+02 Score=35.77 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=51.7
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhh------hhhh---------------hhcchhhhHHHHhHHHHhHhHHhhHHH
Q 010055 51 EAMELYSRARMQKEEIHSLRQQIAVACL------KELQ---------------LQNEKYTLERKVSELRMAIDEKQNEAI 109 (519)
Q Consensus 51 ~~~~l~~k~r~~eeEi~~Lr~~la~~s~------kE~q---------------ll~EK~~LErria~lR~Afd~qQQdlV 109 (519)
++.++|.++..++++...|+++|++|-- +++. -++. ..||.+++++.-.-.+.|.+|-
T Consensus 67 ~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La 145 (1113)
T PRK11281 67 QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLA 145 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999998887531 1111 1122 3499999999988888888887
Q ss_pred HH------HHHHHHHhhhhHhhhhh
Q 010055 110 TS------ALNELARRKGVLEENLK 128 (519)
Q Consensus 110 dA------ASKaLSyRQdiiEENiR 128 (519)
++ +..+..+.|..+.||-+
T Consensus 146 ~~NsqLi~~qT~PERAQ~~lsea~~ 170 (1113)
T PRK11281 146 EYNSQLVSLQTQPERAQAALYANSQ 170 (1113)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHH
Confidence 76 23333444455555543
No 55
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=26.60 E-value=4.3e+02 Score=28.62 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 010055 68 SLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSM 147 (519)
Q Consensus 68 ~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~aeqEr~~fvssl 147 (519)
..+|-|+..-++-.-.+-+| |+-|.+..||.++.-| |--||.|+|| +.--|.- --|+.++.-|
T Consensus 128 ~V~kAI~gvEVrsS~flidK---------~~e~m~~r~q~~~~~a---~~~~~~il~~---~~~~L~~--p~~~~yi~li 190 (366)
T PF09545_consen 128 YVKKAIAGVEVRSSSFLIDK---------MEEAMQTRTQKFIEIA---LKTRDKILEE---FLDVLPH--PWRKKYIALI 190 (366)
T ss_pred HHHHhheeEEeehhHHHHHH---------HHHHHHHHHHHHHHHH---HHHHHHHHHH---HHhhcCC--cchhHHHHHH
Confidence 44555555444444444333 5668899999999876 5579999994 3333432 2344554444
Q ss_pred HHH----hhhcCCC-CCcccchhhhhhHHHHHHHHHHHHHhhhhh
Q 010055 148 LGL----LADYGLW-PHVTNASAISNTVKHLYDQLQSQIRTSYDR 187 (519)
Q Consensus 148 lpl----LaEy~l~-P~v~da~sIvs~vK~L~~~Lq~kl~~~e~k 187 (519)
+.+ +++.+++ |+.+-.+- .--++.||+.|+.++..+..|
T Consensus 191 ns~t~~t~~~~df~~psw~~~~~-l~e~~~l~K~lK~~ik~l~kr 234 (366)
T PF09545_consen 191 NSITDETYALADFRRPSWSSDQR-LIEVMNLFKMLKTAIKELQKR 234 (366)
T ss_pred HHHhHhhhhhhccCCCCccchHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 433 4455554 44333333 346889999999998877665
No 56
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.50 E-value=1.6e+02 Score=28.72 Aligned_cols=51 Identities=31% Similarity=0.387 Sum_probs=34.6
Q ss_pred ccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHh-----HhHHhhHHH
Q 010055 45 ISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAI 109 (519)
Q Consensus 45 ~~~~d~~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~A-----fd~qQQdlV 109 (519)
..|...|-.+|-.-+..-||||..||.-|+. -||+.++||-. +.+-+|++-
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~a--------------Ker~~~eLKrkLGit~l~elkqnls 79 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAA--------------KERHCAELKRKLGITPLSELKQNLS 79 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHCCchHHHHHHHHH
Confidence 4566656667766667779999999998874 35666666633 555566654
No 57
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.48 E-value=3.2e+02 Score=21.49 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=48.2
Q ss_pred ccccccceEEEEeecceEEEeC-CCc--ceeeeecCCCceeEecCCCcceEEEEecCCceeeeecCCCCCchhhHHHHH
Q 010055 429 SSENWEQATLILRRSIYRIKID-STE--AIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMR 504 (519)
Q Consensus 429 ~~d~wE~atL~IrRegY~IK~~-~~~--~~I~EKfs~~~~IkIp~G~~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR 504 (519)
....|..-.++|+.....+-.. ++. .....-.=....|.++.+.+..|.|...+|..+.|.+.+...++.=|-.||
T Consensus 11 ~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~ 89 (91)
T cd01246 11 YLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALE 89 (91)
T ss_pred cCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHH
Confidence 4578999999998655444222 221 222221122234666777788999999988899999988776665554443
No 58
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.33 E-value=2.5e+02 Score=29.89 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHh-----HhHHhhHHHHHHHHHHHHh-------hhhHhhhhhhh
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELARR-------KGVLEENLKLA 130 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~A-----fd~qQQdlVdAASKaLSyR-------QdiiEENiRLt 130 (519)
.+++..||++|.+.=-.=+.||+|...+=++|+.+..+ ||.++.+-|=....+...- +.|.++=|+..
T Consensus 3 ~~~L~~lR~~ID~ID~eIl~LL~~R~~~~~~I~~~K~~~g~pi~dp~RE~~vl~~~~~~~~g~l~~~~i~~If~~I~~~S 82 (360)
T PRK12595 3 NEELEQLRKEIDEINLQLLELLSKRGELVQEIGEEKTKQGTKRYDPVREREMLDMIAENNEGPFEDSTIQHLFKEIFKAS 82 (360)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 45688899999888877889999999999999999876 7777766554443332211 33444444555
Q ss_pred hhhhhhhhhhHHH
Q 010055 131 HDLKVAEDERYFF 143 (519)
Q Consensus 131 yalq~aeqEr~~f 143 (519)
-.+|..+.-....
T Consensus 83 r~~Q~~~~~k~~~ 95 (360)
T PRK12595 83 LELQEDDNRKALL 95 (360)
T ss_pred HHHHHHhhhhhHH
Confidence 5555443333333
No 59
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.55 E-value=6.4e+02 Score=24.63 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhcC--C--CCCccc--chhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--L--WPHVTN--ASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~--l--~P~v~d--a~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+-.|||.+-.+. | -|.-.+ ..+++.+|+..+++|..=|. ..-++++....| ..++|+.|+--
T Consensus 69 ~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL~--~~Gv~~I~~~~G-----~~FDP~~HEAv 139 (178)
T PRK14161 69 ATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVFH--KHHIEEIKPEIG-----SMFDYNLHNAI 139 (178)
T ss_pred HHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEecCCCC-----CCCChHHhhhh
Confidence 457888999887762 2 222122 25788899999998888774 444455431123 24667666543
No 60
>PRK04406 hypothetical protein; Provisional
Probab=25.53 E-value=1.7e+02 Score=24.91 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=23.8
Q ss_pred hhHHHHhHH--HHhHhHHhhHHHHHHHHHHHHhhhhH
Q 010055 89 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVL 123 (519)
Q Consensus 89 ~LErria~l--R~Afd~qQQdlVdAASKaLSyRQdii 123 (519)
.||.||.+| |+|| |++.|+.=++++..=|..|
T Consensus 8 ~le~Ri~~LE~~lAf---QE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAF---QEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 467777765 6676 7889998888888777444
No 61
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=25.51 E-value=1.2e+02 Score=29.03 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=38.1
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010055 430 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 483 (519)
Q Consensus 430 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~G------~~~qfvI~~sdG 483 (519)
...|+ ..|-|.=.||.+...++.+.|.==||-...++||.| .+++.+|.+.|-
T Consensus 80 t~Gf~-~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dk 138 (178)
T PRK05498 80 TEGFE-KKLEIVGVGYRAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDK 138 (178)
T ss_pred CCCeE-EEEEEEeEEEEEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 45666 677777788988887666777666787788888875 345666666664
No 62
>PF14612 Ino80_Iec3: IEC3 subunit of the Ino80 complex, chromatin re-modelling
Probab=25.51 E-value=1.9e+02 Score=29.75 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=28.8
Q ss_pred hHHHHhHHHHhHhHHhh---HHHHHHHHHHHHhhhhHhhhhhh
Q 010055 90 LERKVSELRMAIDEKQN---EAITSALNELARRKGVLEENLKL 129 (519)
Q Consensus 90 LErria~lR~Afd~qQQ---dlVdAASKaLSyRQdiiEENiRL 129 (519)
.-||.+.||..||++=. +|+---.||..-=+.|-|||-||
T Consensus 4 ~kkKy~Kmri~Fd~~m~~~~~l~~~e~~~~~~~kRl~~end~L 46 (232)
T PF14612_consen 4 WKKKYRKMRIKFDQKMKESEELFREEQKAEDTSKRLAEENDQL 46 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999998643 35555556666666678888864
No 63
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.45 E-value=2.9e+02 Score=23.11 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=46.8
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeee----cC-CCceeEecC---CCcceEEEEecCCceeeeecCCCCCchhhHH
Q 010055 430 SENWEQATLILRRSIYRIKIDSTEAIIEER----FP-KEVSIKVPC---GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVL 501 (519)
Q Consensus 430 ~d~wE~atL~IrRegY~IK~~~~~~~I~EK----fs-~~~~IkIp~---G~~~qfvI~~sdG~e~~Lr~~n~~~RD~iVL 501 (519)
.-.|..-.++|+.....+-.+......... .+ ..+.|.+.. .++.-|.|...+|..+.|.+.+....+.=|-
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~ 99 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR 99 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence 568999999999877666554221100000 00 134444542 5667899999999999999988766555444
Q ss_pred HHH
Q 010055 502 TMR 504 (519)
Q Consensus 502 TlR 504 (519)
.||
T Consensus 100 aL~ 102 (104)
T cd01253 100 ALK 102 (104)
T ss_pred HHh
Confidence 443
No 64
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=25.40 E-value=2e+02 Score=25.49 Aligned_cols=84 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHh-----HhHHhhHHHHHHHHHHH-------HhhhhHhhhhhhh
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELA-------RRKGVLEENLKLA 130 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~A-----fd~qQQdlVdAASKaLS-------yRQdiiEENiRLt 130 (519)
++++..||++|.+.=-.=+.||+|...+=.+|+.+..+ ||..+..-|=....+.. +=..|.++=|...
T Consensus 3 ~~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~~~g~l~~~~i~~If~~I~~~S 82 (102)
T TIGR01801 3 NQSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGPNHYDPAREEQMLNELIKINPGPFPTATIKGIFKEIFKAS 82 (102)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34678888888887777788999999999999998876 77766655544333322 1122444444455
Q ss_pred hhhhhhhhhhHHHHHH
Q 010055 131 HDLKVAEDERYFFMSS 146 (519)
Q Consensus 131 yalq~aeqEr~~fvss 146 (519)
-.+|....+.-..||+
T Consensus 83 r~~Q~~~~~~~~~~~~ 98 (102)
T TIGR01801 83 LALQESNDKKQLLVSR 98 (102)
T ss_pred HHHHHhccccceeeec
Confidence 5555555555555554
No 65
>PTZ00421 coronin; Provisional
Probab=25.27 E-value=1.4e+02 Score=32.69 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=22.5
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhh
Q 010055 53 MELYSRARMQKEEIHSLRQQIAVACLKELQLQ 84 (519)
Q Consensus 53 ~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll 84 (519)
++|..++|.|++||..+|+-|-+ ||.+.+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 484 (493)
T PTZ00421 456 QALSEKLRTQHEEIKRCREALQK---KESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 57888899999999999987754 555544
No 66
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=25.15 E-value=2.1e+02 Score=26.08 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhhhcC----CCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 139 ERYFFMSSMLGLLADYG----LWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 139 Er~~fvssllplLaEy~----l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
...-|+..|||++.-+. .-+.-.+..++..+++.++++|..-|. .-.+.++.
T Consensus 59 ~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l~~~L~--~~Gv~~i~ 114 (165)
T PF01025_consen 59 ALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQLEDILE--KNGVEEIE 114 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHHHHHHH--TTTEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH--HCCCEecC
Confidence 44557778888886652 212334556888888888888877663 44455554
No 67
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.10 E-value=1.3e+02 Score=28.83 Aligned_cols=47 Identities=28% Similarity=0.268 Sum_probs=35.9
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHH
Q 010055 53 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 99 (519)
Q Consensus 53 ~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~ 99 (519)
.....+....++++..|..++..+.-...+|.+....||.||.+|+-
T Consensus 87 r~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 87 REALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888888888887764
No 68
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=25.10 E-value=71 Score=29.11 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 010055 61 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 95 (519)
Q Consensus 61 ~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria 95 (519)
|-++||..|+++-..| ..+-+.||--|||||+.
T Consensus 11 EL~~Ei~~L~ekarKA--Eq~G~~nE~aV~erK~~ 43 (102)
T PF08838_consen 11 ELRQEIARLKEKARKA--EQLGIVNEYAVYERKII 43 (102)
T ss_dssp HHHHHHHHHHHHHHHH--HHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 4578899999887554 45678999999999985
No 69
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=24.90 E-value=98 Score=26.76 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=24.5
Q ss_pred CCccccchhhhhHHHHhhccHHHHHHHHHHHHHH
Q 010055 43 NFISFQDREAMELYSRARMQKEEIHSLRQQIAVA 76 (519)
Q Consensus 43 ~~~~~~d~~~~~l~~k~r~~eeEi~~Lr~~la~~ 76 (519)
+...+.++.+++|+.-+-.-|+||..|-+++-+-
T Consensus 47 ~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 47 SSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999888888888887776666543
No 70
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.68 E-value=3e+02 Score=25.15 Aligned_cols=19 Identities=11% Similarity=0.185 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhhhcCCCC
Q 010055 140 RYFFMSSMLGLLADYGLWP 158 (519)
Q Consensus 140 r~~fvssllplLaEy~l~P 158 (519)
-..+.+.|+-+|+.+|+.|
T Consensus 94 ~~~~~~~l~~~L~~~Gv~~ 112 (165)
T PF01025_consen 94 LEMILKQLEDILEKNGVEE 112 (165)
T ss_dssp HHHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHHHHHCCCEe
Confidence 3455566777777777654
No 71
>PRK11020 hypothetical protein; Provisional
Probab=24.59 E-value=1.2e+02 Score=28.46 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhh-----hhhhhcchhhhHHHHhHHHHhHhHHhhHHHH
Q 010055 68 SLRQQIAVACLK-----ELQLQNEKYTLERKVSELRMAIDEKQNEAIT 110 (519)
Q Consensus 68 ~Lr~~la~~s~k-----E~qll~EK~~LErria~lR~Afd~qQQdlVd 110 (519)
.+|.++|.+... =+|+..|+..|+++|+.|+- +|.++|-.
T Consensus 16 ~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~---~~~~~lsk 60 (118)
T PRK11020 16 AIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKE---VQSQKLSK 60 (118)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 456666666543 36899999999999999983 44444433
No 72
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=24.42 E-value=1.9e+02 Score=26.49 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=36.1
Q ss_pred ecccCCC--cceeecccccCCcccceeeEEEEcccCceeeecCCCC--Cceeeecc
Q 010055 316 IGEATPG--EKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATN--PEYVVTAD 367 (519)
Q Consensus 316 ~Gda~pG--~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~~--p~Y~vTAD 367 (519)
.+-+.|| +...-.||....-.-..|-.+..|+-|..-+|..+.+ -+|.||.-
T Consensus 41 ~~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~ 96 (144)
T cd05829 41 AGGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVDRV 96 (144)
T ss_pred CCCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEeEE
Confidence 3444454 3455667775422567899999999999999998543 77887753
No 73
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=23.77 E-value=2.9e+02 Score=23.97 Aligned_cols=59 Identities=24% Similarity=0.447 Sum_probs=37.2
Q ss_pred hhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhh---hhhhhhhhHHHHHHHHHHhhhc
Q 010055 89 TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHD---LKVAEDERYFFMSSMLGLLADY 154 (519)
Q Consensus 89 ~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtya---lq~aeqEr~~fvssllplLaEy 154 (519)
.|+.+|+.|+--.++-.+.+-...++...+...+++++|+|=+. +|.+- ..|++++|+.
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~g-------Q~Lig~iA~~ 65 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIG-------QGLIGLIADQ 65 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHH
Confidence 45556666655444444444444444355778899999999654 55544 4688888876
No 74
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.55 E-value=5.7e+02 Score=31.09 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Q 010055 57 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVA 136 (519)
Q Consensus 57 ~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~a 136 (519)
....+.++.+..+|..+++.--.-.++.++...|++.+.+++...+.....+-+.--+-..-+..+-+ +--+++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 444 (1163)
T COG1196 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE----LQTELEEL 444 (1163)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHH
Q ss_pred hhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 010055 137 EDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRD 190 (519)
Q Consensus 137 eqEr~~fvssllplLaEy-~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke 190 (519)
..+..-....+=-+..+. .++..+..+++-...++...+.++.++..++...+.
T Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 75
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.39 E-value=1.5e+02 Score=29.92 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=36.4
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhh
Q 010055 52 AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKG 121 (519)
Q Consensus 52 ~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQd 121 (519)
.-.|--++||-||-|+.|---++ | ...||..|-- .+|-++|||+++=..|.-
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~----k----WEqkYLEEs~----------mrq~a~dAaa~aa~~rdt 110 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMT----K----WEQKYLEESA----------MRQFAMDAAATAAAQRDT 110 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHH----------HHHHHHHHHhhhHHHHHH
Confidence 44676778999999988754322 2 4567744432 367789999999888877
No 76
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.30 E-value=5.2e+02 Score=26.18 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcccchhhhhh-HHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYGLWPHVTNASAISNT-VKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~l~P~v~da~sIvs~-vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.|-.+..-=. +.+.... +|.+.++|..-|. ...|+++. ..| ..|+|+.|+-.
T Consensus 120 ~~~~~~LLpVlDnLerAl~---~~~~~~g~l~~i~~~l~~vL~--k~Gve~I~-~~G-----e~FDP~~HEAV 181 (218)
T PRK14164 120 AGVATDLLPILDDLDLAEQ---HGDLNEGPLKAFSDKLTNVLA--GLKVEKFG-EEG-----DAFDPEIHEAV 181 (218)
T ss_pred HHHHHHHhhHHhHHHHHHh---cccccccHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhee
Confidence 4688888888776632101 1112222 6666666666554 33444443 122 24667777643
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.89 E-value=4.4e+02 Score=27.12 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=27.2
Q ss_pred HhhccHHHHHHHHHHHHHHhhh--------hh-hhhcchhhhHHHHhHHHHhHh
Q 010055 58 RARMQKEEIHSLRQQIAVACLK--------EL-QLQNEKYTLERKVSELRMAID 102 (519)
Q Consensus 58 k~r~~eeEi~~Lr~~la~~s~k--------E~-qll~EK~~LErria~lR~Afd 102 (519)
.++-.+.||.-+|++++++..| |. .|-.|.+++++|+..|+-...
T Consensus 60 qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~ 113 (239)
T COG1579 60 QVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELA 113 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888776543 22 344566666666665554443
No 78
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=22.48 E-value=1.1e+02 Score=29.05 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=23.5
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHh----hhhhhhhcchhhhHHHHhHHH
Q 010055 52 AMELYSRARMQKEEIHSLRQQIAVAC----LKELQLQNEKYTLERKVSELR 98 (519)
Q Consensus 52 ~~~l~~k~r~~eeEi~~Lr~~la~~s----~kE~qll~EK~~LErria~lR 98 (519)
|.+-|.++ ++|+..|++.|++|- +.| =..+...+|+||++|.
T Consensus 32 T~~G~~~L---~~El~~L~~~i~~Ar~~GDlsE--ak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 32 TEAGLKAL---EDQLAQARAAYEAAQAIEDVNE--RRRQMARPLRDLRYLA 77 (160)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHCCChhH--HHHHHHHHHHHHHHHH
Confidence 44555554 578888888877773 334 1223334555555543
No 79
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.38 E-value=7.3e+02 Score=28.35 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=62.7
Q ss_pred chhhhhHHHHhhccHHHHH--HHHHHHHHHhhh-hhhhhcchhhhHHHHhHHHHhHh---HHhhHHHHHHHHHHHHhhhh
Q 010055 49 DREAMELYSRARMQKEEIH--SLRQQIAVACLK-ELQLQNEKYTLERKVSELRMAID---EKQNEAITSALNELARRKGV 122 (519)
Q Consensus 49 d~~~~~l~~k~r~~eeEi~--~Lr~~la~~s~k-E~qll~EK~~LErria~lR~Afd---~qQQdlVdAASKaLSyRQdi 122 (519)
+|-.+.|+.|+++-|+|.. +.|.+..+..++ ...-|.+-|. ++---...+ +.|-++++.|.|++. +=+
T Consensus 83 sPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~----~~~~~~~~~~~e~~q~~~LekAl~~~~--~i~ 156 (508)
T PF00901_consen 83 SPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYK----FMKGQEKVEEEEENQIEILEKALKSYG--KIV 156 (508)
T ss_pred CHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence 5666999999998888775 344443333322 1222222221 111112222 346667777777654 444
Q ss_pred Hhhhh---hhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 010055 123 LEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIR 182 (519)
Q Consensus 123 iEENi---RLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~ 182 (519)
-+||- ||+-|||....+|+. |-..||+..+.-|+.|+.-+.
T Consensus 157 ~~E~~~l~~L~~AL~kE~~~Rt~-------------------dE~~mv~~yr~ki~aL~~aIe 200 (508)
T PF00901_consen 157 KEENKQLDRLARALQKESRERTQ-------------------DERKMVEEYRQKIDALKNAIE 200 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44554 578899998888873 555666666666776666554
No 80
>PRK14146 heat shock protein GrpE; Provisional
Probab=22.26 E-value=8.1e+02 Score=24.65 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcC----CCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG----LWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 212 (519)
Q Consensus 141 ~~fvssllplLaEy~----l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~~ 212 (519)
.-|+..|||.|--+. .-+.-.+..+|+.+|+..+++|..=|. ..-|+++. +-| ..|+|+.|+-.
T Consensus 104 e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~~L~--k~Gv~~i~-~~G-----~~FDP~~HeAv 171 (215)
T PRK14146 104 KSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILKEFYSVLE--KSNVIRFD-PKG-----EPFDPMSMEAL 171 (215)
T ss_pred HHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH--HCcCeeeC-CCC-----CCCChhHhcee
Confidence 468899999988773 222224568899999999999988874 34444443 112 23677776543
No 81
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.16 E-value=7e+02 Score=25.17 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=50.8
Q ss_pred cchhhhhH-HHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 010055 48 QDREAMEL-YSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 126 (519)
Q Consensus 48 ~d~~~~~l-~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEEN 126 (519)
|.|.-..+ +..+.+.+++|..|+++++++-=+=+.++.|-.-+-||. ....+++.+.|...+..-==-+=+|
T Consensus 42 ~~~~~~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~-------~kE~e~~~~~a~e~~~~~LLpVlDn 114 (208)
T PRK14154 42 MEPHREGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRI-------EREKADIIKFGSKQLITDLLPVADS 114 (208)
T ss_pred cCcccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 45544444 334445566777777777765433334444433333333 3444445554443333222223345
Q ss_pred hhhhhhhhhhh--------hhhHHHHHHHHHHhhhcCCCCC
Q 010055 127 LKLAHDLKVAE--------DERYFFMSSMLGLLADYGLWPH 159 (519)
Q Consensus 127 iRLtyalq~ae--------qEr~~fvssllplLaEy~l~P~ 159 (519)
+..+-+-...+ +=-.+....|+-.|+.+||.+-
T Consensus 115 LeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k~GVe~I 155 (208)
T PRK14154 115 LIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVI 155 (208)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 54443211111 1112334678889999999863
No 82
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=22.10 E-value=1.5e+02 Score=28.36 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=38.1
Q ss_pred cccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010055 430 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 483 (519)
Q Consensus 430 ~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~G------~~~qfvI~~sdG 483 (519)
.+.|+ ..|-|-=.||.+...++.+.|.==||-...+.||.| .+++.+|.+.|-
T Consensus 79 t~Gf~-~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dk 137 (175)
T TIGR03654 79 SEGFE-KKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDK 137 (175)
T ss_pred ccCcE-EEEEEEEEEEEEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 45666 677778888988887766777777787788888876 345566666654
No 83
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=22.02 E-value=76 Score=30.66 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=65.0
Q ss_pred ecCCCCcccceeeeecccCCccccCccchHHHHHHHH--hcce----EEEEEe-----ecCccc--------------cc
Q 010055 379 PMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS--RGHA----TFSVLM-----LMDSSE--------------NW 433 (519)
Q Consensus 379 PmDd~grkGElVk~~ANd~~kI~cDpeMq~~I~~~l~--~G~A----sf~V~l-----l~~~~d--------------~w 433 (519)
+.+-+--.|.+++.|+-=..-+..+|-|+..|..-.. .... .+.|.+ ..+... .|
T Consensus 46 s~~~N~~~gg~~R~F~~l~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~d~ 125 (195)
T PF10014_consen 46 SKEYNPLNGGVVRHFEPLEDEFLSNPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGVDF 125 (195)
T ss_dssp ESSTT-SS-CEEE---B--HHHHTSHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SSSE
T ss_pred ccccchhcCCeeEECCcCChhHhcCHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCCCE
Confidence 3333444688999998877778889999998876632 2222 444332 111111 34
Q ss_pred cceEEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---C---CCCCchhhHHHH
Q 010055 434 EQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---Y---NVRMRDTLVLTM 503 (519)
Q Consensus 434 E~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~G~~~qfvI~~sdG~e~~Lr~---~---n~~~RD~iVLTl 503 (519)
- ++++|.|.+. .|+...|.+. ........---++.+++|+......|..++ . .+..||++|+|+
T Consensus 126 v-~~~li~r~Ni----~GG~s~i~~~-~~~~~~~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlvitf 195 (195)
T PF10014_consen 126 V-FIHLINRHNI----EGGESQIYDN-DKEILFFFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLVITF 195 (195)
T ss_dssp E-EEEEEEEESE----EE--EEEEET-TSSEEEEE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEEEEE
T ss_pred E-EEEEEcCCCc----cCceEEEEeC-CCCcceEEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEEEeC
Confidence 4 6777888665 3444555222 233556666789999999999999998875 2 246799999874
No 84
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.00 E-value=87 Score=28.23 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred eecccCC----CcceeecccccCCcccceeeEEEEcccCceeeecCCC-CCceeeec
Q 010055 315 IIGEATP----GEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGAT-NPEYVVTA 366 (519)
Q Consensus 315 I~Gda~p----G~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~-~p~Y~vTA 366 (519)
+.|-+.| ++-..-.||... .....|..+..|+.|..-+|.... ..+|.||+
T Consensus 30 ~~~s~~p~~g~~gN~vIaGH~~~-~~~~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~~ 85 (136)
T TIGR01076 30 LEGTSLPVGGENTRIVITGHRGL-PTATMFTNLDKLKKGDMLYLHVGNEVLTYQVTS 85 (136)
T ss_pred ccCCcCcccCCCCeEEEEecCCC-CCCCccCCHHHCCCCCEEEEEECCcEEEEEEEE
Confidence 3444455 245566677754 345799999999999998877443 45777765
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.69 E-value=5.5e+02 Score=25.68 Aligned_cols=48 Identities=33% Similarity=0.460 Sum_probs=37.1
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhH
Q 010055 60 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 107 (519)
Q Consensus 60 r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQd 107 (519)
....+|+..+|++|.....+=..|.+.+..||++|++|.--++...++
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 355678888888888887777778888999999999887766665444
No 86
>PRK04325 hypothetical protein; Provisional
Probab=21.45 E-value=2.2e+02 Score=24.03 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=22.4
Q ss_pred hHHHHhH--HHHhHhHHhhHHHHHHHHHHHHhhhhHh
Q 010055 90 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVLE 124 (519)
Q Consensus 90 LErria~--lR~Afd~qQQdlVdAASKaLSyRQdiiE 124 (519)
+|.||.+ +|+|| |++.|+.=++++..=|..|.
T Consensus 7 ~e~Ri~~LE~klAf---QE~tIe~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 7 MEDRITELEIQLAF---QEDLIDGLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4555554 46666 78888888888887775553
No 87
>PRK06285 chorismate mutase; Provisional
Probab=21.26 E-value=5.4e+02 Score=22.21 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=50.0
Q ss_pred HHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhH
Q 010055 91 ERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTV 170 (519)
Q Consensus 91 Erria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~v 170 (519)
...+.++|-.+|+-=..||+.-.+-+.+=++|.+-...-...+-..+.|...+- .+.-+..+++|.|.. +
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~~~~~v~dp~RE~~vl~-~~~~~a~~~~l~~~~---------i 75 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKSLGMPIFDPEREDYIHE-KIRKLCEEHNIDENI---------G 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH-HHHHHhhhCCCCHHH---------H
Confidence 345677888888777777776666666666665544444444445555555543 455556668888763 4
Q ss_pred HHHHHHHHHHHHhh
Q 010055 171 KHLYDQLQSQIRTS 184 (519)
Q Consensus 171 K~L~~~Lq~kl~~~ 184 (519)
+.+|+.+-+--+..
T Consensus 76 ~~if~~Ii~~s~~~ 89 (96)
T PRK06285 76 LKIMKILMEHSKEL 89 (96)
T ss_pred HHHHHHHHHHHHHH
Confidence 55565554443333
No 88
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=21.02 E-value=1.3e+02 Score=31.57 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=53.6
Q ss_pred CCCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccceeeeec-ccCC
Q 010055 320 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 398 (519)
Q Consensus 320 ~pG~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmDd~grkGElVk~~A-Nd~~ 398 (519)
-||+++.|.||-+-|.+.... =.+.+|...|.=....=+|++|..++ ++ |- ++ ++|+ |+.|
T Consensus 138 q~G~~~vAAgy~lYGp~T~lv---~t~g~gv~~ftld~~~g~f~lt~~~~------~i-p~--~~------~~ys~n~~n 199 (315)
T cd00354 138 QPGRNQVAAGYALYGPSTMLV---LTLGQGVHGFTLDPSLGEFILTHPNV------KI-PK--KG------KIYSINEGN 199 (315)
T ss_pred CcchhhheEEEEEEcCceEEE---EEeCCceEEEEEcCCCCeEEEecCCc------ee-CC--CC------CEECCCCcc
Confidence 489999999999998766543 23346766555444344677776552 22 21 22 6788 6566
Q ss_pred ccccCccchHHHHHHHHh
Q 010055 399 KIKCDLGMQSEIDAYISR 416 (519)
Q Consensus 399 kI~cDpeMq~~I~~~l~~ 416 (519)
.=.+|+.+|..|+..+..
T Consensus 200 ~~~w~~~~~~yi~~~~~~ 217 (315)
T cd00354 200 YRYWDEPVKKYIDDCKAG 217 (315)
T ss_pred hhcCCHHHHHHHHHHhcc
Confidence 667999999999988764
No 89
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.80 E-value=3.7e+02 Score=26.87 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHH
Q 010055 62 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEK 104 (519)
Q Consensus 62 ~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~q 104 (519)
-+.||..||+.|.+.+..=+++.-|.-.|...+.++|.=|...
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3678888888888888877777777777777777777777655
No 90
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.58 E-value=5.6e+02 Score=27.23 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=23.9
Q ss_pred ccchhhhhHHHHhhccHHHHHHHHHHHHH
Q 010055 47 FQDREAMELYSRARMQKEEIHSLRQQIAV 75 (519)
Q Consensus 47 ~~d~~~~~l~~k~r~~eeEi~~Lr~~la~ 75 (519)
|-|+..-|-++++.--+|||..|.+.|+.
T Consensus 215 ~~D~~~~dh~V~i~~lkeeia~Lkk~L~q 243 (305)
T KOG3990|consen 215 FGDRDPGDHMVKIQKLKEEIARLKKLLHQ 243 (305)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 44555557788999999999999999986
No 91
>PLN02262 fructose-1,6-bisphosphatase
Probab=20.57 E-value=1.3e+02 Score=32.10 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=52.7
Q ss_pred CCcceeecccccCCcccceeeEEEEcccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccceeeeec-ccCCc
Q 010055 321 PGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQNK 399 (519)
Q Consensus 321 pG~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmDd~grkGElVk~~A-Nd~~k 399 (519)
||+++.|.||-+-|.+....=.+ .+|...+.=....=+|++|..++- + |- + =++|+ |++|-
T Consensus 158 ~G~~qvAAGY~lYG~~T~lV~t~---g~gv~~Ftld~~~gef~lt~~~i~------i-p~--~------~~~ys~N~~n~ 219 (340)
T PLN02262 158 PGKEMVAAGYCMYGSSCTLVLST---GGGVNGFTLDPSLGEFILTHPDIK------I-PK--K------GKIYSVNEGNA 219 (340)
T ss_pred chHhhhheeeeeecCceEEEEEe---CCCeeEEEEcCCCCEEEEeCCCce------e-CC--C------CCEeccCccch
Confidence 99999999999999876655444 456554443333445666665541 1 22 2 26888 66777
Q ss_pred cccCccchHHHHHHHH
Q 010055 400 IKCDLGMQSEIDAYIS 415 (519)
Q Consensus 400 I~cDpeMq~~I~~~l~ 415 (519)
=.+|+.+|.-|+....
T Consensus 220 ~~w~~~~~~yi~~~~~ 235 (340)
T PLN02262 220 KNWDGPTAKYVEKCKF 235 (340)
T ss_pred hhcCHHHHHHHHHHhh
Confidence 7899999999998763
No 92
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.53 E-value=8.2e+02 Score=24.02 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=59.7
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcch---hhhHHHHhHHHHhHhHHhhHH--HHHHHHH---------H
Q 010055 51 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK---YTLERKVSELRMAIDEKQNEA--ITSALNE---------L 116 (519)
Q Consensus 51 ~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK---~~LErria~lR~Afd~qQQdl--VdAASKa---------L 116 (519)
++..|..-+...++|+..||++|+.|.---..|.+=| ..+|+.+..|+.-++.-+|.. |...-++ .
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655666778888889999888763333322212 233555555555444333322 1222222 2
Q ss_pred HHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCC
Q 010055 117 ARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPH 159 (519)
Q Consensus 117 SyRQdiiEENiRLtyalq~aeqEr~~fvssllplLaEy~l~P~ 159 (519)
.+.|..-..|+-|-=-|++.....-.=---|-.+|+.-|+.|.
T Consensus 136 evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~ 178 (201)
T PF13851_consen 136 EVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445555666666666655544433333345567788899887
No 93
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=20.52 E-value=5.5e+02 Score=24.23 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=30.1
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 134 KVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 134 q~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
+.++.+.+--++.|+-....| |. ..+ -..|++|+.+|..+|++|....
T Consensus 91 ~~~~~~l~~al~~l~~~~e~y---P~-Lka-------~~~~~~l~~~l~~~E~~I~~aR 138 (186)
T PF04011_consen 91 QQAEAELSQALSRLLAVVENY---PE-LKA-------DENFQQLMAQLEETENRIAAAR 138 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----HH-HHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC---Cc-cch-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555544 22 111 1249999999999999987665
No 94
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.37 E-value=5.1e+02 Score=25.39 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=38.5
Q ss_pred hhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcC-CCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcc
Q 010055 120 KGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYG-LWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRD 190 (519)
Q Consensus 120 QdiiEENiRLtyalq~aeqEr~~fvssllplLaEy~-l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke 190 (519)
.++..||-||+=.|+.|++|+.- |=--|+.|. -.=...++.+.+..+..=++.|+|+-..++.++..
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~e----L~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEE----LRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999764 344455552 11112233333333344456666666555555433
No 95
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=20.21 E-value=4.8e+02 Score=21.18 Aligned_cols=61 Identities=30% Similarity=0.321 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhh----hhhhhhcch--hhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhh
Q 010055 65 EIHSLRQQIAVACL----KELQLQNEK--YTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEE 125 (519)
Q Consensus 65 Ei~~Lr~~la~~s~----kE~qll~EK--~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEE 125 (519)
|+..+|.+|.++.- .++.-+..+ -....-+..|.-+|+.+.-+.+-.+...|.|-+.|.++
T Consensus 9 e~mE~rE~le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~ 75 (78)
T PF07743_consen 9 EQMELREELEEAQNSDDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEE 75 (78)
T ss_dssp HHHHHHHHHHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777632 111111111 11223345666788777766666667777777766654
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.06 E-value=5.4e+02 Score=29.67 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcch-hhhHHHHhHHHHhHhHHhhHHHHH-------------HHHHHHHhhhh------
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEK-YTLERKVSELRMAIDEKQNEAITS-------------ALNELARRKGV------ 122 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK-~~LErria~lR~Afd~qQQdlVdA-------------ASKaLSyRQdi------ 122 (519)
..|+..|..+|.. =+++-+-|+.. ...|-|+++|-..+.+.+.++.|. ||+||+.-+..
T Consensus 93 ~kElE~L~~qlqa-qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~E 171 (617)
T PF15070_consen 93 RKELESLEEQLQA-QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAE 171 (617)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHH
Confidence 3445555555442 34454455444 356888888888888888887764 68888876543
Q ss_pred --------Hhhhhhhhhhhhhhhh
Q 010055 123 --------LEENLKLAHDLKVAED 138 (519)
Q Consensus 123 --------iEENiRLtyalq~aeq 138 (519)
=.+|+=||-+||.+++
T Consensus 172 lq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 172 LQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHH
Confidence 3478888888887543
Done!