Query 010055
Match_columns 519
No_of_seqs 50 out of 52
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 18:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 3.2E-25 1.1E-29 211.6 18.2 187 313-507 15-210 (230)
2 2q6q_A Spindle POLE BODY compo 58.7 14 0.00048 30.6 4.9 28 51-78 4-38 (74)
3 3o0z_A RHO-associated protein 53.7 80 0.0027 29.6 9.8 56 51-106 14-83 (168)
4 3he5_B Synzip2; heterodimeric 50.0 25 0.00086 26.9 4.7 41 67-107 6-46 (52)
5 4f9p_D 103.2 anti-BTN3A1 antib 43.8 2.5E+02 0.0085 27.7 12.5 57 320-380 13-86 (254)
6 2dfs_A Myosin-5A; myosin-V, in 40.3 84 0.0029 36.2 9.2 25 164-188 1022-1046(1080)
7 3pl0_A Uncharacterized protein 39.5 75 0.0026 30.9 7.6 123 377-505 91-247 (254)
8 4hci_A Cupredoxin 1; structura 37.7 25 0.00085 28.1 3.3 32 459-491 24-55 (100)
9 3oja_B Anopheles plasmodium-re 36.7 86 0.003 32.0 7.9 6 89-94 527-532 (597)
10 3oja_B Anopheles plasmodium-re 36.4 10 0.00034 38.9 0.9 27 166-192 552-578 (597)
11 2rlo_A Centaurin-gamma 1; spli 33.4 44 0.0015 27.5 4.2 41 471-511 87-127 (128)
12 3mq7_A Bone marrow stromal ant 33.3 34 0.0012 30.7 3.7 40 57-96 71-110 (121)
13 2gtv_X CM, chorismate mutase; 33.0 1.4E+02 0.0047 25.5 7.3 75 65-139 4-103 (104)
14 2l2l_B Methyl-CPG-binding doma 32.5 24 0.00084 25.8 2.2 21 58-78 11-31 (36)
15 3iyk_A VP5; icosahedral virus; 30.6 3.7E+02 0.013 29.2 11.5 109 49-182 89-206 (526)
16 4h22_A Leucine-rich repeat fli 30.0 1.1E+02 0.0036 26.9 6.1 63 55-134 35-97 (103)
17 3tnu_B Keratin, type II cytosk 29.3 97 0.0033 26.7 5.9 47 59-105 31-77 (129)
18 3dde_A TENA/THI-4 protein, dom 28.9 50 0.0017 30.4 4.2 51 94-144 179-235 (239)
19 1i84_S Smooth muscle myosin he 28.3 1.3E+02 0.0043 34.6 8.1 11 64-74 864-874 (1184)
20 4e81_A Chaperone protein DNAK; 27.6 91 0.0031 29.2 5.8 33 85-117 172-204 (219)
21 1gk7_A Vimentin; intermediate 27.5 52 0.0018 23.9 3.2 34 63-96 5-38 (39)
22 3kbt_A Beta-I spectrin, spectr 26.9 3.8E+02 0.013 24.8 14.2 130 48-190 34-169 (326)
23 3efg_A Protein SLYX homolog; x 26.7 85 0.0029 25.6 4.7 34 89-125 11-46 (78)
24 3viq_B Mating-type switching p 26.6 84 0.0029 26.6 4.8 61 86-154 2-67 (85)
25 1nkw_E 50S ribosomal protein L 26.1 1E+02 0.0035 29.6 5.9 54 429-483 106-165 (212)
26 3ol1_A Vimentin; structural ge 25.5 3.2E+02 0.011 23.4 9.7 36 63-105 19-54 (119)
27 2etd_A LEMA protein; bromodoma 25.1 57 0.002 29.9 3.8 48 133-192 75-123 (171)
28 3a7p_A Autophagy protein 16; c 25.1 2.6E+02 0.0088 25.9 8.1 86 22-127 32-119 (152)
29 3tnu_A Keratin, type I cytoske 25.0 72 0.0025 27.7 4.3 48 59-106 33-80 (131)
30 4ani_A Protein GRPE; chaperone 24.9 4.6E+02 0.016 25.0 10.8 63 141-211 109-175 (213)
31 3hnw_A Uncharacterized protein 22.6 1.8E+02 0.0061 25.9 6.4 38 61-98 86-123 (138)
32 1z0k_B FYVE-finger-containing 22.4 1E+02 0.0035 25.2 4.3 43 63-107 26-68 (69)
33 3ghg_A Fibrinogen alpha chain; 22.3 1.2E+02 0.0042 33.0 6.2 60 46-105 53-130 (562)
34 2cx7_A Sterol carrier protein 21.4 47 0.0016 28.6 2.4 50 307-369 29-81 (130)
35 1sf9_A YFHH hypothetical prote 21.2 1E+02 0.0035 27.9 4.5 33 61-95 36-68 (128)
36 1iby_A Nitrosocyanin; RED copp 21.2 2.2E+02 0.0076 22.8 6.3 31 460-491 35-65 (112)
37 3rmi_A Chorismate mutase prote 21.0 3.9E+02 0.013 22.7 8.3 38 63-100 11-48 (114)
38 2dfs_A Myosin-5A; myosin-V, in 20.1 2.9E+02 0.01 31.8 9.1 17 59-75 986-1002(1080)
39 1m1j_B Fibrinogen beta chain; 20.0 6E+02 0.02 27.0 10.7 27 53-79 88-115 (464)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.93 E-value=3.2e-25 Score=211.61 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=158.9
Q ss_pred ceeecccCCCcceee--cccccCCcccceeeEEEEc-ccCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccce
Q 010055 313 FQIIGEATPGEKLLG--CGYPVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 389 (519)
Q Consensus 313 lqI~Gda~pG~~L~a--cG~~ingTtlC~FqWVRhl-eDGt~~~IeGA~~p~Y~vTADDVdtliAvec~PmDd~grkGEl 389 (519)
+.+-|.-..|.-|+- |--..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+| .|+.
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776653 3333334799999999999 889999999999999999999999999999998 3899
Q ss_pred eeeecccCCccccCccchHHHHHHHHhcceEEEEEeecCcccccc-ceEEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 010055 390 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 467 (519)
Q Consensus 390 Vk~~ANd~~kI~cDpeMq~~I~~~l~~G~Asf~V~ll~~~~d~wE-~atL~IrRegY~IK~~~-~~~~I~EKfs~~~~Ik 467 (519)
+.+|+| +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999955567888 99999999999999985 4499999999987664
Q ss_pred ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 010055 468 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ 507 (519)
Q Consensus 468 Ip~G--~--~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~ 507 (519)
=..| + +.-.+-.-.-|..+.|-++..|.|..+++.-|-|-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA 210 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA 210 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence 4443 2 33455566789999999999999999999999984
No 2
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.73 E-value=14 Score=30.57 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=22.8
Q ss_pred hhhhHHHHhhccHHHHH-------HHHHHHHHHhh
Q 010055 51 EAMELYSRARMQKEEIH-------SLRQQIAVACL 78 (519)
Q Consensus 51 ~~~~l~~k~r~~eeEi~-------~Lr~~la~~s~ 78 (519)
+++||..+++++.+||. +||.+|-.|+.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYte 38 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVD 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999996 56777766664
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.67 E-value=80 Score=29.56 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=41.7
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhh---------hhh-----hhhcchhhhHHHHhHHHHhHhHHhh
Q 010055 51 EAMELYSRARMQKEEIHSLRQQIAVACL---------KEL-----QLQNEKYTLERKVSELRMAIDEKQN 106 (519)
Q Consensus 51 ~~~~l~~k~r~~eeEi~~Lr~~la~~s~---------kE~-----qll~EK~~LErria~lR~Afd~qQQ 106 (519)
+-.++=.+.|..-|--..|||.-++++. +|+ +|-+.|-.||+-++.|+-+.++...
T Consensus 14 QL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 14 QLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777888888877663 343 4778899999999999998887653
No 4
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=50.02 E-value=25 Score=26.93 Aligned_cols=41 Identities=34% Similarity=0.442 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhH
Q 010055 67 HSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 107 (519)
Q Consensus 67 ~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQd 107 (519)
.-|||+||..--.-+||-.+..-||+-||.||--+-.-.++
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 45899999888888999999999999999999655444333
No 5
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=43.81 E-value=2.5e+02 Score=27.71 Aligned_cols=57 Identities=21% Similarity=0.478 Sum_probs=36.0
Q ss_pred CCCcce----eecccccCCcccceeeEEEEc-------------ccCceeeecCCCCCceeeeccccCceEEEEEEec
Q 010055 320 TPGEKL----LGCGYPVRGTTLCMFQWVRHL-------------QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPM 380 (519)
Q Consensus 320 ~pG~~L----~acG~~ingTtlC~FqWVRhl-------------eDGt~~~IeGA~~p~Y~vTADDVdtliAvec~Pm 380 (519)
-||+-| .|+||+++ ...+-|||+- .+|...|-+..++ .++||.|.-.+.+-++..-|
T Consensus 13 kPG~Sl~lSC~~SG~tf~---~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kg-R~TiSrD~s~nt~yLqm~sL 86 (254)
T 4f9p_D 13 RPGTSVKVSCKASGYAFT---SYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKD-RTTLTADQSSSTAYMQLSSL 86 (254)
T ss_dssp CTTCCEEEEEEEESSCGG---GCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTT-TEEEEEETTTTEEEEEECSC
T ss_pred CCCCCeEEEEEEeCCChh---hCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCC-CEEEeeccCCCcCeeEEccC
Confidence 366655 35688874 2457788874 2334444443333 67899998888887776544
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=40.30 E-value=84 Score=36.18 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhh
Q 010055 164 SAISNTVKHLYDQLQSQIRTSYDRI 188 (519)
Q Consensus 164 ~sIvs~vK~L~~~Lq~kl~~~e~kl 188 (519)
+..|++++..-+.|+.++..++..+
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666443
No 7
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}
Probab=39.55 E-value=75 Score=30.92 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=77.7
Q ss_pred EEecCCCCcccceeeeecccCCccccCccchHHHHHHHH-----hcc--eEEEEE-----eecCccc-------------
Q 010055 377 CIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS-----RGH--ATFSVL-----MLMDSSE------------- 431 (519)
Q Consensus 377 c~PmDd~grkGElVk~~ANd~~kI~cDpeMq~~I~~~l~-----~G~--Asf~V~-----ll~~~~d------------- 431 (519)
+|+.|=+--.|.+++.|.-=..-+.-+|.||+.|..... .++ ..+.|. .......
T Consensus 91 ~Qs~~~N~~~Ggi~R~F~pl~~~~~~~p~~~~Ll~~~~~~~~~~~~~~~~~w~I~vHq~Ri~a~~~~g~ptPEGiHrDG~ 170 (254)
T 3pl0_A 91 WQPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGV 170 (254)
T ss_dssp EECSSTTCSSCSEEECCCBCCHHHHTSHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEEEETTSSCCCCCTTCSBCCSS
T ss_pred cCchhcccccCCeEEECCCcchhhhcCHHHHHHHHHHHHHhhhccCCcCCceEEEEEEEEEEEcCCCCccCCcccccCCC
Confidence 355555566789999998877778888999999987543 333 233322 2221111
Q ss_pred cccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---CC------CCCchhhHHH
Q 010055 432 NWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---YN------VRMRDTLVLT 502 (519)
Q Consensus 432 ~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~G~~~qfvI~~sdG~e~~Lr~---~n------~~~RD~iVLT 502 (519)
.|- ++++|.|.+.. |+...|-+.- ....+..---++.+++|+......|...+ .+ +..||++|+|
T Consensus 171 d~v-~v~lv~R~Ni~----GGet~I~~~~-~~~~~~~~l~~p~d~llv~D~~~~H~vTpI~~~~~~~~~~~g~RDvlVvt 244 (254)
T 3pl0_A 171 DFV-AVVFIGRQGVR----GGETRVFDAA-GPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLT 244 (254)
T ss_dssp SEE-EEEEEEEESEE----ECCEEEEETT-SSEEEEECCCSTTCEEEEETTTEEEEECCEEESCTTCTTSCCEEEEEEEE
T ss_pred CEE-EEEEecCCccc----cceEEEEcCC-CCccceeEecCCCcEEEEeCCcccCCCCccccCCCCCCCCceEEEEEEEE
Confidence 344 56777776543 3444443321 12334444678899999998888888775 33 3569999999
Q ss_pred HHH
Q 010055 503 MRM 505 (519)
Q Consensus 503 lR~ 505 (519)
+|.
T Consensus 245 f~~ 247 (254)
T 3pl0_A 245 YRS 247 (254)
T ss_dssp EES
T ss_pred ecC
Confidence 864
No 8
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=37.67 E-value=25 Score=28.14 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=24.3
Q ss_pred ecCCCceeEecCCCcceEEEEecCCceeeeecC
Q 010055 459 RFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 491 (519)
Q Consensus 459 Kfs~~~~IkIp~G~~~qfvI~~sdG~e~~Lr~~ 491 (519)
+|+|+. |+|+-|.+-.|++...|+..|.+...
T Consensus 24 ~F~P~~-i~v~~G~tV~~~~~n~d~~~H~~~~~ 55 (100)
T 4hci_A 24 YFNPNV-ITIPINESTTLLLKNKGKSEHTFTIK 55 (100)
T ss_dssp EEESSE-EEECTTSCEEEEEEECSSSCEEEEEG
T ss_pred EEeCCE-EEECCCCEEEEEEEcCCCceEEEEEe
Confidence 577763 78888888888888888777877653
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.67 E-value=86 Score=32.00 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.2
Q ss_pred hhHHHH
Q 010055 89 TLERKV 94 (519)
Q Consensus 89 ~LErri 94 (519)
.+++.+
T Consensus 527 ~~~~~~ 532 (597)
T 3oja_B 527 ARRTEA 532 (597)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.42 E-value=10 Score=38.88 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 166 ISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 166 Ivs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
.....|...+.|+.++..+..++|+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555
No 11
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=33.44 E-value=44 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCcceEEEEecCCceeeeecCCCCCchhhHHHHHHHHhhhh
Q 010055 471 GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKAL 511 (519)
Q Consensus 471 G~~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~~~Al 511 (519)
+...-|.|+..+|..+.|.+.+...||.=|-.|+.-+..+|
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l 127 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence 35567999999889999999999999999998888777665
No 12
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.31 E-value=34 Score=30.69 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=34.5
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhH
Q 010055 57 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 96 (519)
Q Consensus 57 ~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~ 96 (519)
.++++.+.||..|..+|-+++.+=-+|+.|+..|--||+.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 4578889999999999999999988888888888888875
No 13
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=32.97 E-value=1.4e+02 Score=25.49 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhhhh--------hhhcchhhhHHHHhHHHHh-----HhHHhh-HHHHHHHHH-----------HHHh
Q 010055 65 EIHSLRQQIAVACLKEL--------QLQNEKYTLERKVSELRMA-----IDEKQN-EAITSALNE-----------LARR 119 (519)
Q Consensus 65 Ei~~Lr~~la~~s~kE~--------qll~EK~~LErria~lR~A-----fd~qQQ-dlVdAASKa-----------LSyR 119 (519)
++..||++|.+.--+=+ .||+|.-.|=++|+.+..+ ||.... .+++...+. -..=
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 47788998888877777 8899999999999988865 344333 233332221 1234
Q ss_pred hhhHhhhhhhhhhhhhhhhh
Q 010055 120 KGVLEENLKLAHDLKVAEDE 139 (519)
Q Consensus 120 QdiiEENiRLtyalq~aeqE 139 (519)
+.||++++++-+.+-...||
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 56777777777766655543
No 14
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=32.47 E-value=24 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=18.6
Q ss_pred HhhccHHHHHHHHHHHHHHhh
Q 010055 58 RARMQKEEIHSLRQQIAVACL 78 (519)
Q Consensus 58 k~r~~eeEi~~Lr~~la~~s~ 78 (519)
-+|.||+-+...|++|++|-.
T Consensus 11 DIr~QE~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 11 DIRKQEERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999864
No 15
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=30.59 E-value=3.7e+02 Score=29.19 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=65.1
Q ss_pred chhhhhHHHHhhccHHHHH--HHHHHHHHHhhhh-hhhhcchhhhHHHHhHHHHhHhH---HhhHHHHHHHHHHHHhhhh
Q 010055 49 DREAMELYSRARMQKEEIH--SLRQQIAVACLKE-LQLQNEKYTLERKVSELRMAIDE---KQNEAITSALNELARRKGV 122 (519)
Q Consensus 49 d~~~~~l~~k~r~~eeEi~--~Lr~~la~~s~kE-~qll~EK~~LErria~lR~Afd~---qQQdlVdAASKaLSyRQdi 122 (519)
+|-.+.++.|+++-|+|.. .+|.+..+..++. ..-|.+-| ++..-.--.|+ .|-+.++.|.|++. +=+
T Consensus 89 sPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~----~~~~~~~~~e~~e~~q~~~LekAl~s~~--~i~ 162 (526)
T 3iyk_A 89 SPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY----NFMNGEANAEIEDEKQFDILNKAVTSYN--KIL 162 (526)
T ss_pred CHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence 5667999999998887775 4444444443332 11122211 22222222222 47788888888754 444
Q ss_pred Hhhhh---hhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 010055 123 LEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIR 182 (519)
Q Consensus 123 iEENi---RLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~ 182 (519)
-+||- +|+-|||....+|+. |-..+|+..+.=|+.|++-+.
T Consensus 163 ~~e~~~l~~L~~AL~kE~~~Rt~-------------------dE~~mi~~yr~k~~aL~~aIe 206 (526)
T 3iyk_A 163 TEEDLQMRRLATALQKEIGERTH-------------------AETVMVKEYRDKIDALKNAIE 206 (526)
T ss_pred HHHHhHHHHHHHHHHHHHHhhcH-------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45554 578899999888873 555666666777777766554
No 16
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.00 E-value=1.1e+02 Score=26.86 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=37.0
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Q 010055 55 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLK 134 (519)
Q Consensus 55 l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdiiEENiRLtyalq 134 (519)
|=.++-+.||...+|++.+-+-| |-+..++.+++..|.++.. .--+|.+|-++|+| ||+.||.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~--------------re~e~~Kr~~~~L~~~~~~-lk~~L~qRD~LI~E--~~~~~~~ 97 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKN--------------KEFEREKHAHSILQFQFAE-VKEALKQREEMLEP--KLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHTTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHH
Confidence 33456688888888888776654 2245566677766555443 45589999999998 5566553
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.26 E-value=97 Score=26.75 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=35.3
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHh
Q 010055 59 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 105 (519)
Q Consensus 59 ~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQ 105 (519)
++..++||..||..|-...+.=-.+.+-|..||+.|+++.--|+.+-
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l 77 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELAL 77 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999887766555567889999999999987776543
No 18
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=28.93 E-value=50 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=39.2
Q ss_pred HhHHHHhHh------HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHH
Q 010055 94 VSELRMAID------EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFM 144 (519)
Q Consensus 94 ia~lR~Afd------~qQQdlVdAASKaLSyRQdiiEENiRLtyalq~aeqEr~~fv 144 (519)
+..+|-..| +.|+.+|++|-.+...-.+++++=.+--..++..+.+||.|+
T Consensus 179 ~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~~l~~~~~~~~~~~~~~~~~~ 235 (239)
T 3dde_A 179 AEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFL 235 (239)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCCC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHH
Confidence 344555555 569999999999999999999886665444599999999986
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.31 E-value=1.3e+02 Score=34.65 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 010055 64 EEIHSLRQQIA 74 (519)
Q Consensus 64 eEi~~Lr~~la 74 (519)
+|+..|+.+|.
T Consensus 864 ~eL~el~~~L~ 874 (1184)
T 1i84_S 864 EELQRTKERQQ 874 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 20
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=27.57 E-value=91 Score=29.18 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=16.3
Q ss_pred cchhhhHHHHhHHHHhHhHHhhHHHHHHHHHHH
Q 010055 85 NEKYTLERKVSELRMAIDEKQNEAITSALNELA 117 (519)
Q Consensus 85 ~EK~~LErria~lR~Afd~qQQdlVdAASKaLS 117 (519)
.||..++..|.+++-+.+..-.+.+.++.++|.
T Consensus 172 ~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~ 204 (219)
T 4e81_A 172 DDKTAIESALTALETALKGEDKAAIEAKMQELA 204 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555555555555444444444444443
No 21
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.48 E-value=52 Score=23.94 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhH
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 96 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~ 96 (519)
+|++..|-.++|.|.-|--.|=.+...||.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999998877777788888888753
No 22
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=26.91 E-value=3.8e+02 Score=24.76 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=74.4
Q ss_pred cchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcch----hhhHHHHhHHHHhHhHHhhHHHHHHHHHHHHhhhh
Q 010055 48 QDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK----YTLERKVSELRMAIDEKQNEAITSALNELARRKGV 122 (519)
Q Consensus 48 ~d~~-~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK----~~LErria~lR~Afd~qQQdlVdAASKaLSyRQdi 122 (519)
.|+. ++.++.|-+.-+.||...+..+....-.=-+|+.++ -.+.+++..|+-.|+. |.+. ..-|+..
T Consensus 34 ~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~----L~~~----~~~R~~~ 105 (326)
T 3kbt_A 34 KDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAG----LKDV----AEERKRK 105 (326)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHH----HHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH----HHHH----HHHHHHH
Confidence 4544 367777777788888777666654433333344433 3567777777665543 3333 3558999
Q ss_pred HhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHhh-hhhhcc
Q 010055 123 LEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTS-YDRIRD 190 (519)
Q Consensus 123 iEENiRLtyalq~aeqEr~~fvssllplLaEy~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~-e~klke 190 (519)
||+.++| |.+...=++....++.-...|+... ...|- .-|..+..-|+.++..+..+ +.++..
T Consensus 106 Le~~l~l-~~f~~~~~~l~~Wl~~~e~~l~~~~---~g~d~-~~v~~l~~~~~~f~~el~~~~~~~v~~ 169 (326)
T 3kbt_A 106 LENMYHL-FQLKRETDDLEQWISEKELVASSPE---MGQDF-DHVTLLRDKFRDFARETGAIGQERVDN 169 (326)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC---CCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccc---CCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999887 5544433455566666666665322 22232 22334444567777776652 444443
No 23
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.67 E-value=85 Score=25.65 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=24.1
Q ss_pred hhHHHHhHH--HHhHhHHhhHHHHHHHHHHHHhhhhHhh
Q 010055 89 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLEE 125 (519)
Q Consensus 89 ~LErria~l--R~Afd~qQQdlVdAASKaLSyRQdiiEE 125 (519)
.||.||.+| |+|| |.+.|+.=+.++..-|.-|..
T Consensus 11 ~le~Ri~~LE~klAf---qE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSF---QEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 356676654 6676 778888888888877776654
No 24
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.61 E-value=84 Score=26.57 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=36.2
Q ss_pred chhhhHHHHhHHHHhHhHHhhHHHHHHHHHHHH--hhhhHhhhhhhhhh---hhhhhhhhHHHHHHHHHHhhhc
Q 010055 86 EKYTLERKVSELRMAIDEKQNEAITSALNELAR--RKGVLEENLKLAHD---LKVAEDERYFFMSSMLGLLADY 154 (519)
Q Consensus 86 EK~~LErria~lR~Afd~qQQdlVdAASKaLSy--RQdiiEENiRLtya---lq~aeqEr~~fvssllplLaEy 154 (519)
|+..|+.||+.|.--.++-++.+..+.++ |+- =..+++++|+|=+. ++.+- ..|++++|+.
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~-L~~~~~~~~~~~hI~~Lh~YNeiKD~g-------q~L~g~iA~~ 67 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAK-LKNRDAKQTVQKHIDLLHTYNEIRDIA-------LGMIGKVAEH 67 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSSCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHH
Confidence 45566666666666666555555554332 111 13578889988653 44443 4678888876
No 25
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=26.05 E-value=1e+02 Score=29.60 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=42.0
Q ss_pred ccccccceEEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 010055 429 SSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 483 (519)
Q Consensus 429 ~~d~wE~atL~IrRegY~IK~~~~~~~I~EKfs~~~~IkIp~G------~~~qfvI~~sdG 483 (519)
-.+.|+ ..|-|-=-||.+...+..+.|.==||-.+.+.||.| .+++++|.+.|-
T Consensus 106 Vt~Gf~-kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDK 165 (212)
T 1nkw_E 106 VSDGYT-INLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDK 165 (212)
T ss_pred eccCeE-EEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCH
Confidence 356777 788899999999988777888777898899999977 345666666664
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.54 E-value=3.2e+02 Score=23.44 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHh
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 105 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQ 105 (519)
|.+|..||++|-+++.- |-.|+-.+..||.|.|.-.
T Consensus 19 e~~I~~LR~qid~~~~e-------~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTND-------KARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 67899999999887765 4444444555555555443
No 27
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=25.13 E-value=57 Score=29.94 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=36.6
Q ss_pred hhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccc
Q 010055 133 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 192 (519)
Q Consensus 133 lq~aeqEr~~fvssllplLaEy-~l~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~ 192 (519)
++.||.+.+--++.|+-+...| +|... .-|.+||.+|..+|.+|.-..
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan------------~~f~~Lq~eL~~~EnrIa~AR 123 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXAD------------ANFRQLMDELAGTENRIAVAR 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888777666 44332 359999999999999986555
No 28
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.10 E-value=2.6e+02 Score=25.89 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=32.8
Q ss_pred cccccccccccccCCccccCCCCccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhH
Q 010055 22 DFVNSRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAI 101 (519)
Q Consensus 22 ~~~~~r~~~e~~~~~~~~~~~~~~~~~d~~~~~l~~k~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Af 101 (519)
+.+..|..+|++|.-.+.... ....|. +.++-+.+..+|..|+ .|...|++||.+|-..+
T Consensus 32 ~rL~~Rd~~E~~~~~l~~e~~---~~~~~~---~vs~~~~~~~~I~~L~--------------~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 32 RRLTDRNDKEAHLNELFQDNS---GAIGGN---IVSHDDALLNTLAILQ--------------KELKSKEQEIRRLKEVI 91 (152)
T ss_dssp ----------------------------CH---HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHhhc---cCCCcc---cccchhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 456667777776665554421 222221 3333333333444443 45556778888887777
Q ss_pred hHHhh--HHHHHHHHHHHHhhhhHhhhh
Q 010055 102 DEKQN--EAITSALNELARRKGVLEENL 127 (519)
Q Consensus 102 d~qQQ--dlVdAASKaLSyRQdiiEENi 127 (519)
.++.. +.+-...=+|...-+++|+.+
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77663 344455555666556655543
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.02 E-value=72 Score=27.68 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=30.5
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhh
Q 010055 59 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 106 (519)
Q Consensus 59 ~r~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQ 106 (519)
++..++||..||..|-...+.=-.+.+-|..||+.|+++.--|+.+-.
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~ 80 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA 80 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888776665445678889999999998877765433
No 30
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.93 E-value=4.6e+02 Score=25.04 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcCCCCCCC
Q 010055 141 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 211 (519)
Q Consensus 141 ~~fvssllplLaEy~--l--~P~v~da~sIvs~vK~L~~~Lq~kl~~~e~klke~~~~p~~~~~~~~~~~~~~q~ 211 (519)
.-|+..|||.|--+. | -|.-.+..++..+|+.++++|..=|. ..-|+.+. | .|. -|+|+.|+-
T Consensus 109 e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~--k~Gv~~I~--~---~Ge-~FDP~~HeA 175 (213)
T 4ani_A 109 QSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALK--KEGVEAIE--A---VGK-PFDPYLHQA 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHH--HTTEECCC--C---SSS-CCCTTTEEE
T ss_pred HHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CCC-CCCHHHcee
Confidence 458999999987662 2 24335667899999999999988874 33444443 1 222 366777764
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.58 E-value=1.8e+02 Score=25.89 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHH
Q 010055 61 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 98 (519)
Q Consensus 61 ~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR 98 (519)
+.++||..|+..|..+-+|--.+..|...|.+++..|+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444444444444443
No 32
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=22.37 E-value=1e+02 Score=25.21 Aligned_cols=43 Identities=28% Similarity=0.358 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHhHhHHhhH
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 107 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~Afd~qQQd 107 (519)
.|.|..+++.|-+| |...=+.|-.+||+-+.+|.-.|+++|.+
T Consensus 26 ~EQ~~~I~~yI~qA--k~~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 26 LQQIHNITSFIRQA--KAAGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57889999999887 56778899999999999999999998853
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.30 E-value=1.2e+02 Score=33.00 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=35.5
Q ss_pred cccchhhhhHHHH---hhccHHHHHHHHHHHHHHhhhhhh--------------hhcchh-hhHHHHhHHHHhHhHHh
Q 010055 46 SFQDREAMELYSR---ARMQKEEIHSLRQQIAVACLKELQ--------------LQNEKY-TLERKVSELRMAIDEKQ 105 (519)
Q Consensus 46 ~~~d~~~~~l~~k---~r~~eeEi~~Lr~~la~~s~kE~q--------------ll~EK~-~LErria~lR~Afd~qQ 105 (519)
.++|.++++|..+ +|.+=|+|.+.++-+-.|.-.=.. ..+|-. .|||||.+|+-=+|.|=
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677776444 455556666555555444221111 223333 79999999999888773
No 34
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 1wfr_A
Probab=21.37 E-value=47 Score=28.57 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCcccceeecccCCCcceeecccccCCcccceeeEEEEcccCceeeecCC--CC-Cceeeecccc
Q 010055 307 GPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA--TN-PEYVVTADDV 369 (519)
Q Consensus 307 lp~i~glqI~Gda~pG~~L~acG~~ingTtlC~FqWVRhleDGt~~~IeGA--~~-p~Y~vTADDV 369 (519)
+-|+-.+.|+|++ .||++- .-.|.=.|++|.+.+.+.. .. |+|++|+++-
T Consensus 29 ~~~~~~~~i~~~p-------~~g~~~------~~~~~l~l~~G~~~~~~~~~~~~~~d~tl~~~~e 81 (130)
T 2cx7_A 29 WEGSLALAVRPDP-------KAGFPK------GVAVVLDLWHGACRGAKAVEGEAEADFVIEADLA 81 (130)
T ss_dssp CEEEEEEEECCBG-------GGTBTT------CEEEEEEEETTEEEEEEEEESCCCCSEEEEECHH
T ss_pred CcceEEEEEecCc-------ccCCCC------CceEEEEEeCCEEEEccccCCCCCCCEEEEEcHH
Confidence 3456677888876 225431 1348888999988655522 23 8888888763
No 35
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=21.21 E-value=1e+02 Score=27.90 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 010055 61 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 95 (519)
Q Consensus 61 ~~eeEi~~Lr~~la~~s~kE~qll~EK~~LErria 95 (519)
|-++||..|+++-..| .++-+.||--|+|||++
T Consensus 36 EL~~EI~~L~EKaRKA--Eq~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 36 ELNTEIALLSEKARKA--EQHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 4567788887776555 56789999999999985
No 36
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=21.19 E-value=2.2e+02 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=24.7
Q ss_pred cCCCceeEecCCCcceEEEEecCCceeeeecC
Q 010055 460 FPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 491 (519)
Q Consensus 460 fs~~~~IkIp~G~~~qfvI~~sdG~e~~Lr~~ 491 (519)
|+| ..|+||.|.+..|.++..|+.-|.+...
T Consensus 35 f~p-~~i~v~~G~~V~~~~~n~d~~~H~~~i~ 65 (112)
T 1iby_A 35 NEP-ETLVVKKGDAVKVVVENKSPISEGFSID 65 (112)
T ss_dssp EES-CEEEEETTCEEEEEEEECSSSCEEEEEG
T ss_pred EcC-CEEEEeCCCEEEEEEEECCCCeEEEEEc
Confidence 555 4588999999999999988777877654
No 37
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.99 E-value=3.9e+02 Score=22.75 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHh
Q 010055 63 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA 100 (519)
Q Consensus 63 eeEi~~Lr~~la~~s~kE~qll~EK~~LErria~lR~A 100 (519)
.+++..||++|.+.--.=+.||+|...|=++|+.+..+
T Consensus 11 ~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 11 LSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888877777778888888888888887764
No 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.12 E-value=2.9e+02 Score=31.80 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=8.3
Q ss_pred hhccHHHHHHHHHHHHH
Q 010055 59 ARMQKEEIHSLRQQIAV 75 (519)
Q Consensus 59 ~r~~eeEi~~Lr~~la~ 75 (519)
+++.++||..|++.+..
T Consensus 986 v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.03 E-value=6e+02 Score=26.96 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=17.2
Q ss_pred hhHHHHhhc-cHHHHHHHHHHHHHHhhh
Q 010055 53 MELYSRARM-QKEEIHSLRQQIAVACLK 79 (519)
Q Consensus 53 ~~l~~k~r~-~eeEi~~Lr~~la~~s~k 79 (519)
++.+.+.++ -+..|..|+..|...+-+
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 344455543 456788899888777544
Done!