BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010056
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 45/276 (16%)
Query: 187 PQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEV----LGFKLEGTMSTSVAYLV 242
P L SS + D + LQ L D+ ++ E++P+V L E + + +L
Sbjct: 130 PLPLSSSTLADYVDHSETLQKLVQLGVDLSKI-EKHPDVANLLLRLNFEKDIKQILLFLK 188
Query: 243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGL 302
+G+ ++G LT+ I + +K V YL+S + +A +++ P++L F +
Sbjct: 189 DLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSV 247
Query: 303 EERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGS 362
E +L + ++ S K
Sbjct: 248 E-------------------------------------RLDNRLGFFQKELELSVKKTRD 270
Query: 363 IVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQ 421
+V ++P+++ S V ++ + GF +++ +V + P++L N + +FDY
Sbjct: 271 LVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVH 330
Query: 422 REMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKG 457
M P +V FP F + IK RH +A G
Sbjct: 331 NVMNIPHHIIVKFPQVFNTRV-FKIKERHLFLAYLG 365
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 53/273 (19%)
Query: 219 LERYPE----VLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFV 274
+E++PE +L E + + +L +G+ ++G LT+ I + +K V
Sbjct: 169 IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRV 227
Query: 275 EYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEII 334
YL S + VA+++ K P++L F +E
Sbjct: 228 AYLHSKNFSKADVAQMVRKAPFLLNFSVE------------------------------- 256
Query: 335 GIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQ 393
+L + ++ S K +V ++P+++ S V ++ + GF
Sbjct: 257 ------RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHN 310
Query: 394 QVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMI 453
+++ ++ P++L N + +FD+ M P +V FP F L +K RH +
Sbjct: 311 EIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFL 369
Query: 454 ARKGLQ---------CSLSWLLNCSDEKFKERM 477
G SL L++ DE F E +
Sbjct: 370 TYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEI 402
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 40/227 (17%)
Query: 225 VLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPR 284
+L E ++ + +L +G+ ++G LT+ P ILG + ++ V YL+S
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEEL-EALETRVAYLKSKKFGN 225
Query: 285 LAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLG 344
+ +++ + PY+L F +E +L
Sbjct: 226 AEITQMVSRAPYLLLFSVE-------------------------------------RLDN 248
Query: 345 QQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQQVRQIVVECP 403
+ + + S K +V + P+++ V ++ + GF +V+QI + P
Sbjct: 249 RLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQQIAFKTP 308
Query: 404 QVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRH 450
++L + ++ +FDY M P + L FP F L IK RH
Sbjct: 309 KILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERH 354
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 110/276 (39%), Gaps = 45/276 (16%)
Query: 187 PQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPE----VLGFKLEGTMSTSVAYLV 242
P + S + D K LQ L D+ ++ E++P+ +L E + + +L
Sbjct: 133 PLPISSFTLADYVDHSKTLQKLVQLGVDLSKI-EKHPDAANLLLRLDFEKHIKQILLFLK 191
Query: 243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGL 302
+G+ ++G LT+ I + +K V YL+S + +AR+++ P++L F +
Sbjct: 192 DLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSV 250
Query: 303 EERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGS 362
E +L + ++ + K
Sbjct: 251 E-------------------------------------RLDNRLGFFQKELELNVKKTRD 273
Query: 363 IVEKMPQVVNASNSAVTRHVD-FLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQ 421
+V ++P+++ S V ++ + GF +++ +V++ P++L N + FDY
Sbjct: 274 LVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVH 333
Query: 422 REMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKG 457
M P +V FP F + IK RH +A G
Sbjct: 334 NVMNIPHHIIVKFPQLFNTRV-FKIKERHLFLAYLG 368
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 72/318 (22%)
Query: 151 PLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVV--KYLQGL 208
PL C ++ LG ++ T LR+ + V+ +L+ V Y+Q
Sbjct: 16 PLTWACMARQT--------PHLGEQRRTTASLLRKLTTASNGGVIEELSCVRSNNYVQEP 67
Query: 209 DIKPNDIPRVLERY--PEVLG-FKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMR 265
+ + N + +LE+ P V G +LE MS+ L+ +G S I ++L +R
Sbjct: 68 ECRRNLVQCLLEKQGTPVVQGSLELERVMSS----LLDMGFSNAHIN-------ELLSVR 116
Query: 266 VGRVIKPFVEYLES---LGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEA 322
G ++ ++ + LG+ V +++K P +L + +RK +
Sbjct: 117 RGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-------------MQMRKRS 163
Query: 323 LPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHV 382
Y + +G LG+ L ++ P++ + V
Sbjct: 164 ------SYLQKLG-------LGEGKL------------KRVLYCCPEIFTMRQQDINDTV 198
Query: 383 DFLK-SCGFFLQQVRQIVVECPQVLALNLDIM--KLSFDYFQREMQRPLDDLVVFPAFFT 439
LK C F +QQV +I+ CP VL +L + K + YF+ ++ P +V +
Sbjct: 199 RLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHP---DIVKSEYLQ 255
Query: 440 YGLESTIKPRHKMIARKG 457
Y L + IK RH + R G
Sbjct: 256 YSL-TKIKQRHIYLERLG 272
>sp|A1RGE6|RLMC_SHESW 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC OS=Shewanella
sp. (strain W3-18-1) GN=rlmC PE=3 SV=1
Length = 389
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 210 IKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGM----- 264
+KP P YP V G E T + A +V +G + + G+++ + + +
Sbjct: 45 LKPFVAPSAAIFYPPVTG---EATAFRNKAKMVVLGAAHAPVLGIVSPSGEAVSLCDCLL 101
Query: 265 ---RVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKE 321
+ +++ ++++ GIP V +K L F L R + E LL F +R
Sbjct: 102 YPSDMQKLLHRLTQFVQQAGIPPYRV----DKAKGELKFILLTRSQVRGEYLLRFVLRSH 157
Query: 322 --------ALPVVVAQYPEI--IGIDLKP 340
ALP ++A+YP+I + ++++P
Sbjct: 158 NSIERIERALPTLLAEYPQINVVSVNIQP 186
>sp|A4Y9Y4|RLMC_SHEPC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rlmC PE=3
SV=1
Length = 389
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 210 IKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGM----- 264
+KP P YP V G E T + A +V +G + + G+++ + + +
Sbjct: 45 LKPFVAPSAAIFYPPVTG---EATAFRNKAKMVVLGAAHAPVLGIVSPSGEAVSLCDCLL 101
Query: 265 ---RVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKE 321
+ +++ ++++ GIP V +K L F L R + E LL F +R
Sbjct: 102 YPSDMQKLLHRLTQFVQQAGIPPYRV----DKAKGELKFILLTRSQVRGEYLLRFVLRSH 157
Query: 322 --------ALPVVVAQYPEI--IGIDLKP 340
ALP ++A+YP+I + ++++P
Sbjct: 158 NSIERIERALPTLLAEYPQINVVSVNIQP 186
>sp|Q8K9I7|SYN_BUCAP Asparagine--tRNA ligase OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=asnS PE=3 SV=1
Length = 466
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 153 VLGCSVKKNMIPVLDY-LGKLGVRKSTFTEF--LRRYPQVLHSSVVVDLAPVVKYLQGL- 208
++G S ++ I VLD L +LG+RK + + LRRY V HS + ++ Y+ G+
Sbjct: 390 LIGGSQREERISVLDLRLSELGLRKEDYWWYRDLRRYGTVHHSGFGMGFERLISYITGIS 449
Query: 209 ---DIKPNDIPRVLE 220
DI P PR ++
Sbjct: 450 NIRDIIP--FPRTVK 462
>sp|Q827D7|GCSP_STRAW Glycine dehydrogenase [decarboxylating] OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=gcvP PE=3 SV=2
Length = 961
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 245 GVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLG 281
G++ REI GVL +YP G R IKP VE LG
Sbjct: 212 GIAEREINGVLIQYPGASGAV--RDIKPLVEQAHELG 246
>sp|O25842|Y1247_HELPY Protein HP_1247 OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=HP_1247 PE=1 SV=1
Length = 340
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 109 QGIGIVPDELDGLEL---PVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPV 165
+ +G+ ++LD L + P+T+E ++E L D++ L+LG +KK+ + +
Sbjct: 185 EDLGVSFNDLDKLAVLNAPITLEDIQE-------LSSNAGDMDLQKLILGLFLKKSALDI 237
Query: 166 LDYLGKLGVRKSTFTEFLRRY 186
DYL K G + + L RY
Sbjct: 238 YDYLLKEGKKDADILRGLERY 258
>sp|Q9ZJY0|Y1168_HELPJ Protein jhp_1168 OS=Helicobacter pylori (strain J99) GN=jhp_1168
PE=1 SV=1
Length = 340
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 116 DELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVR 175
D+L L P+T+E ++E L D++ L+LG +KK+++ + DYL K G +
Sbjct: 195 DKLAVLNAPITLEDIQE-------LSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEGKK 247
Query: 176 KSTFTEFLRRY 186
+ L RY
Sbjct: 248 DADILRGLERY 258
>sp|Q68W42|Y691_RICTY Putative export ATP-binding/permease protein RT0691 OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=RT0691 PE=3
SV=1
Length = 576
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 114 VPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLG 173
V + L P TV + + VDF +N ++ INN S+K N + +G+ G
Sbjct: 321 VHNNYYALNNPDTVSIEFKNVDFTYNSRPNLKIINN------MSLKINANKFVGIVGRSG 374
Query: 174 VRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPE 224
KST + L R+ + + +++++ + + I P DI + + P+
Sbjct: 375 AGKSTLIQLLLRFYRQDNGTILINNQDISR------INPTDIRKFIAYVPQ 419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,452,146
Number of Sequences: 539616
Number of extensions: 8178319
Number of successful extensions: 23780
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 23765
Number of HSP's gapped (non-prelim): 29
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)