Query 010056
Match_columns 519
No_of_seqs 282 out of 1362
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 5.9E-52 2E-56 428.8 20.8 305 133-479 22-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 8.4E-43 2.9E-47 348.7 17.8 247 198-484 5-262 (270)
3 3mva_O Transcription terminati 100.0 5.1E-41 1.8E-45 346.9 18.7 302 104-453 22-342 (343)
4 4fp9_B Mterf domain-containing 100.0 1.1E-34 3.9E-39 296.4 18.4 207 233-483 45-265 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 1.8E-34 6.2E-39 288.3 17.8 217 163-422 6-224 (270)
6 4fp9_B Mterf domain-containing 99.9 2.4E-26 8.1E-31 235.0 15.3 182 197-426 45-227 (335)
7 4fzv_B Mterf domain-containing 99.2 2E-10 6.7E-15 101.2 14.1 164 316-483 43-220 (239)
8 4fzv_B Mterf domain-containing 98.7 1.4E-07 4.7E-12 83.1 12.1 148 162-318 33-182 (239)
9 4hpz_A Dtale2; DNA binding pro 88.2 3.3 0.00011 41.8 11.1 39 108-147 8-46 (463)
10 1oqy_A HHR23A, UV excision rep 87.7 0.71 2.4E-05 47.2 6.3 35 132-170 170-204 (368)
11 3ff5_A PEX14P, peroxisomal bio 80.1 4 0.00014 29.7 5.6 24 162-185 30-53 (54)
12 1oqy_A HHR23A, UV excision rep 78.1 1.1 3.9E-05 45.7 3.1 42 234-284 168-209 (368)
13 4ae4_A Ubiquitin-associated pr 73.4 10 0.00035 32.1 7.4 90 271-404 9-102 (118)
14 2w84_A Peroxisomal membrane pr 68.6 7.5 0.00026 29.7 4.8 25 162-186 35-59 (70)
15 3ugm_A TAL effector avrbs3/PTH 67.6 39 0.0013 37.1 11.7 153 128-291 206-366 (1047)
16 3ff5_A PEX14P, peroxisomal bio 65.5 12 0.00041 27.1 5.2 33 367-402 22-54 (54)
17 4ae4_A Ubiquitin-associated pr 56.4 38 0.0013 28.5 7.6 21 237-257 11-31 (118)
18 3rdw_A Putative arsenate reduc 52.8 32 0.0011 28.9 6.6 77 105-195 22-101 (121)
19 2w84_A Peroxisomal membrane pr 48.6 21 0.00072 27.3 4.2 33 367-402 27-59 (70)
20 3fz4_A Putative arsenate reduc 46.9 25 0.00086 29.5 5.0 77 105-195 20-100 (120)
21 1ify_A HHR23A, UV excision rep 46.3 22 0.00076 24.9 3.9 38 378-422 8-45 (49)
22 3gkx_A Putative ARSC family re 46.3 33 0.0011 28.7 5.7 77 105-195 21-101 (120)
23 2g3q_A Protein YBL047C; endocy 43.7 17 0.00058 24.6 2.8 23 380-402 6-28 (43)
24 3ugm_A TAL effector avrbs3/PTH 42.6 8.4 0.00029 42.2 1.6 21 127-147 341-362 (1047)
25 1ify_A HHR23A, UV excision rep 42.2 44 0.0015 23.3 4.9 23 272-294 10-32 (49)
26 2ooa_A E3 ubiquitin-protein li 40.2 22 0.00074 25.5 2.9 25 377-401 10-34 (52)
27 2cos_A Serine/threonine protei 39.3 35 0.0012 24.6 3.9 40 273-319 12-51 (54)
28 1z96_A DNA-damage, UBA-domain 38.0 29 0.001 22.7 3.3 24 379-402 5-28 (40)
29 3l78_A Regulatory protein SPX; 37.0 49 0.0017 27.5 5.3 96 105-219 17-114 (120)
30 2oo9_A E3 ubiquitin-protein li 36.0 36 0.0012 23.7 3.4 24 378-401 4-27 (46)
31 2knz_A Ubiquilin-4; cytoplasm, 35.1 34 0.0012 24.4 3.4 40 376-422 9-49 (53)
32 1s3c_A Arsenate reductase; ARS 34.2 48 0.0016 28.6 4.9 100 105-223 19-120 (141)
33 2juj_A E3 ubiquitin-protein li 33.4 39 0.0013 24.4 3.4 24 377-400 6-29 (56)
34 1wji_A Tudor domain containing 32.9 32 0.0011 25.5 3.1 37 380-423 11-47 (63)
35 1vg5_A RSGI RUH-014, rhomboid 32.2 29 0.001 26.7 2.8 38 378-422 29-66 (73)
36 2ekk_A UBA domain from E3 ubiq 31.6 33 0.0011 23.6 2.8 24 379-402 10-33 (47)
37 4hpz_A Dtale2; DNA binding pro 29.4 2.9E+02 0.0099 28.0 10.0 241 137-400 8-254 (463)
38 2dak_A Ubiquitin carboxyl-term 29.1 44 0.0015 24.6 3.2 40 379-425 10-49 (63)
39 2d9s_A CBL E3 ubiquitin protei 28.8 37 0.0013 24.4 2.6 24 378-401 9-32 (53)
40 2knz_A Ubiquilin-4; cytoplasm, 28.6 97 0.0033 21.9 4.9 40 161-208 10-50 (53)
41 1wiv_A UBP14, ubiquitin-specif 28.3 44 0.0015 25.5 3.2 38 379-423 30-67 (73)
42 3v6t_A DHAX3; tandem repeats, 28.3 3.9E+02 0.013 27.4 10.8 244 128-400 51-315 (499)
43 3f0i_A Arsenate reductase; str 28.2 60 0.0021 27.0 4.4 77 105-195 21-100 (119)
44 3dfg_A Xcrecx, regulatory prot 27.4 74 0.0025 28.0 5.1 56 127-186 48-108 (162)
45 2jy5_A Ubiquilin-1; UBA, alter 27.3 45 0.0015 23.6 2.9 25 377-401 11-36 (52)
46 1veg_A NEDD8 ultimate buster-1 27.3 48 0.0016 26.2 3.3 42 379-427 30-71 (83)
47 1wgn_A UBAP1, ubiquitin associ 27.2 41 0.0014 25.0 2.6 38 380-424 21-58 (63)
48 2xzm_O RPS13E; ribosome, trans 24.0 81 0.0028 27.7 4.4 46 140-186 11-59 (153)
49 3u5c_N S27A, YS15, 40S ribosom 22.9 88 0.003 27.4 4.4 46 140-186 9-57 (151)
50 1pve_A HHR23B, UV excision rep 22.3 44 0.0015 25.6 2.2 39 213-262 16-54 (72)
51 2dkl_A Trinucleotide repeat co 21.6 1.4E+02 0.0047 23.5 5.0 39 271-317 22-60 (85)
52 3dfg_A Xcrecx, regulatory prot 21.3 4E+02 0.014 23.0 10.2 24 380-403 137-160 (162)
53 1wji_A Tudor domain containing 21.3 1.2E+02 0.0041 22.4 4.3 36 272-315 11-46 (63)
54 1vg5_A RSGI RUH-014, rhomboid 21.2 87 0.003 24.0 3.6 23 271-293 30-52 (73)
55 1uxc_A FRUR (1-57), fructose r 21.0 1.3E+02 0.0046 22.0 4.6 46 278-324 8-53 (65)
56 2dak_A Ubiquitin carboxyl-term 20.9 1.4E+02 0.0046 21.9 4.6 37 271-315 10-46 (63)
57 1z3e_A Regulatory protein SPX; 20.6 1.3E+02 0.0044 25.2 5.1 100 105-223 18-119 (132)
58 3e3v_A Regulatory protein RECX 20.4 3E+02 0.01 24.3 7.8 120 273-401 24-162 (177)
59 2dag_A Ubiquitin carboxyl-term 20.2 72 0.0024 24.4 3.0 40 380-425 11-50 (74)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.9e-52 Score=428.82 Aligned_cols=305 Identities=22% Similarity=0.346 Sum_probs=270.8
Q ss_pred HHHHHHhCCCCccccc-cCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCC
Q 010056 133 RVDFLHNLGLTIEDIN-NYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIK 211 (519)
Q Consensus 133 ~l~~L~~lGls~~~i~-~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s 211 (519)
++++|.++|++.+++. ++|+++..+++ +++++++||+++|++.++|++++.++|.+|.++.+ ++.|+++||+++|++
T Consensus 22 ~v~~L~s~Gl~~~~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s 99 (343)
T 3mva_O 22 LLKNLLTMGVDIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTS 99 (343)
T ss_dssp HHHHHHHHTCCHHHHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSC
T ss_pred HHHHHHHcCCCHHHHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCC
Confidence 3999999999999885 79999998886 58999999999999999999999999999999965 899999999999999
Q ss_pred CCChhHHhhhCccc-cccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCC------h
Q 010056 212 PNDIPRVLERYPEV-LGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIP------R 284 (519)
Q Consensus 212 ~~~I~~il~~~P~l-L~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~------~ 284 (519)
++++++++.++|++ ++.+.++++.|+++||+++|++.++|++++.++|++|+++++++ ++++++|+++|++ .
T Consensus 100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~ 178 (343)
T 3mva_O 100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPA 178 (343)
T ss_dssp HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHH
Confidence 99999999999995 45444358999999999999999999999999999999999965 9999999987764 6
Q ss_pred HHHHHHHHhCCcccccccccchhhhHHHHHh-hhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHH
Q 010056 285 LAVARLIEKKPYILGFGLEERVKPNVESLLE-FSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSI 363 (519)
Q Consensus 285 ~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~ 363 (519)
+.|.+++.++|++|+++ +++++++++||++ +|++++++..++++.|
T Consensus 179 ~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~-------------------------------- 225 (343)
T 3mva_O 179 DFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPG-------------------------------- 225 (343)
T ss_dssp HHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTT--------------------------------
T ss_pred HHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCC--------------------------------
Confidence 78999999999999999 6688888888884 7777666555554432
Q ss_pred HHhhhhhhhcChhHHHHhHHHHH----HhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccc
Q 010056 364 VEKMPQVVNASNSAVTRHVDFLK----SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFT 439 (519)
Q Consensus 364 v~k~P~iL~~s~~~l~~kv~fL~----~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ 439 (519)
|.++..+.+.+++++.|+. ++||+.++|.+|+.++|++|++|.++|++|++||++ ||+++++|+++|++|+
T Consensus 226 ----~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~ 300 (343)
T 3mva_O 226 ----AEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLD 300 (343)
T ss_dssp ----GGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGG
T ss_pred ----hHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHh
Confidence 3555666667777776665 699999999999999999999999999999999999 9999999999999999
Q ss_pred cCccccchHHHHHHHHcCCCCCcc--hhhccChHHHHHHHhh
Q 010056 440 YGLESTIKPRHKMIARKGLQCSLS--WLLNCSDEKFKERMNY 479 (519)
Q Consensus 440 ySLekRI~PR~~~L~~kGl~~sl~--~~l~~sd~~F~~r~v~ 479 (519)
||+| ||+|||++|+++|+++++. +|+++||++|+++|..
T Consensus 301 ~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 301 SSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp SCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence 9999 9999999999999999888 9999999999999964
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=8.4e-43 Score=348.73 Aligned_cols=247 Identities=22% Similarity=0.393 Sum_probs=216.3
Q ss_pred hHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHH
Q 010056 198 LAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL 277 (519)
Q Consensus 198 l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L 277 (519)
-.++++||.++|++..+|.+....+|.+|++++++++.|+++||+++|++..+|++++.++|.+|++++++ ++|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 35889999999999988877777777779999999999999999999999999999999999999999996 99999999
Q ss_pred HHhCCChHHHHHHHHhCCcccccccccchhhhHHHHH-hhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCC
Q 010056 278 ESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLL-EFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSS 356 (519)
Q Consensus 278 ~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s 356 (519)
+++|++.+++++++.++|++|+++++ ++++++++|+ ++|++.+++.
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~-------------------------------- 130 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR-------------------------------- 130 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHH--------------------------------
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHH--------------------------------
Confidence 99999999999999999999999988 6888888884 5666655544
Q ss_pred hhhHHHHHHhhhhhhhcChhHHHHhHHHHH-HhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcC
Q 010056 357 SKDFGSIVEKMPQVVNASNSAVTRHVDFLK-SCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFP 435 (519)
Q Consensus 357 ~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~-~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P 435 (519)
+++.++|+++..+.++++++++++. ++||+.++|.+|+.++|++|++|.++|++|++||+++||+++++|+++|
T Consensus 131 -----~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P 205 (270)
T 3m66_A 131 -----DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFP 205 (270)
T ss_dssp -----HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCG
T ss_pred -----HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCc
Confidence 4555556666666667788899875 5999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccchHHHHHHHH---cCC------CCCcchhhccChHHHHHHHhhccccc
Q 010056 436 AFFTYGLESTIKPRHKMIAR---KGL------QCSLSWLLNCSDEKFKERMNYDTIDL 484 (519)
Q Consensus 436 ~~L~ySLekRI~PR~~~L~~---kGl------~~sl~~~l~~sd~~F~~r~v~~~~~~ 484 (519)
++|+||+| ||+|||.+|+. +|+ .+++.+++++||++|+++|++.+.|.
T Consensus 206 ~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee 262 (270)
T 3m66_A 206 QVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD 262 (270)
T ss_dssp GGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred hHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH
Confidence 99999999 99999998765 565 26888999999999999999998874
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.1e-41 Score=346.93 Aligned_cols=302 Identities=18% Similarity=0.255 Sum_probs=261.8
Q ss_pred HHHHHHhCCCCccccCCc------cCCCChHHHHHHHHHHHhCCCCccccc----cCCcccccccccchHHHHHHHhhCC
Q 010056 104 VYDFLQGIGIVPDELDGL------ELPVTVEVMRERVDFLHNLGLTIEDIN----NYPLVLGCSVKKNMIPVLDYLGKLG 173 (519)
Q Consensus 104 vv~yL~~~Gi~~~~l~~l------~~p~~~d~v~~~l~~L~~lGls~~~i~----~~P~lL~~s~~~~l~p~l~~L~~lG 173 (519)
+++||.++|++.+.+.+. ..|.+++. +++||+++|+++++|+ ++|.+|+++++ ++.|+++||+++|
T Consensus 22 ~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~---vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG 97 (343)
T 3mva_O 22 LLKNLLTMGVDIDMARKRQPGVFHRMITNEQD---LKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIV 97 (343)
T ss_dssp HHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHH---HHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTS
T ss_pred HHHHHHHcCCCHHHHHHhCchhhccCcccHHH---HHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcC
Confidence 589999999998877542 13455554 5999999999999986 79999999965 6999999999999
Q ss_pred CChhHHHHHHhhcCcccccccc-cchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCC-----
Q 010056 174 VRKSTFTEFLRRYPQVLHSSVV-VDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVS----- 247 (519)
Q Consensus 174 ls~~~i~~ll~~~P~iL~~s~~-~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~----- 247 (519)
++++++++++.++|++|..+.+ .++.|+++||+++|++.++|++++.++|++|+++++++ ++++++|+++|++
T Consensus 98 ~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~ 176 (343)
T 3mva_O 98 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHND 176 (343)
T ss_dssp SCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCc
Confidence 9999999999999996555544 48999999999999999999999999999999999876 9999999988764
Q ss_pred -hhHHHHHHhhCccccccccccchhhHHHHHH-HhCCChHHHHHHHHhC-CcccccccccchhhhHHHHHhhhcCCccHH
Q 010056 248 -RREIGGVLTRYPDILGMRVGRVIKPFVEYLE-SLGIPRLAVARLIEKK-PYILGFGLEERVKPNVESLLEFSVRKEALP 324 (519)
Q Consensus 248 -~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~-~lG~~~~~i~~iI~~~-P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~ 324 (519)
...|.++++++|.+++++ +++++++++||+ ++|++.+++.+++.+. |.+++++.+ ++++++.++.+
T Consensus 177 p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e--------- 245 (343)
T 3mva_O 177 PADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKE--------- 245 (343)
T ss_dssp HHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHH---------
Confidence 678999999999999999 779999999999 5999999999999885 588888865 78888777653
Q ss_pred HHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHHhCCcHHHHHHHHHhcCc
Q 010056 325 VVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVECPQ 404 (519)
Q Consensus 325 ~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~P~ 404 (519)
++ ..+||+.+++..|+.++|+++.+|.++++.|++||.++|++.++| .++|+
T Consensus 246 -----------------------~~-~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~ 297 (343)
T 3mva_O 246 -----------------------KL-FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQI----IENPR 297 (343)
T ss_dssp -----------------------HH-HTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHTTTCCHHHH----HHSGG
T ss_pred -----------------------HH-HHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHHcCCCHHHH----HhCCH
Confidence 12 478999999999999999999999999999999999999999998 79999
Q ss_pred hhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHH
Q 010056 405 VLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMI 453 (519)
Q Consensus 405 lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L 453 (519)
+|+||.|+|++|++||.. .|+.+.. .+..+|++| |++...|+..|
T Consensus 298 ~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~l~~s-~~~F~~~~~~~ 342 (343)
T 3mva_O 298 VLDSSISTLKSRIKELVN-AGCNLST--LNITLLSWS-KKRYEAKLKKL 342 (343)
T ss_dssp GGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGGGGSC-HHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHH-CCCCCCC--CcchhhcCC-HHHHHHHHhcc
Confidence 999999999999999876 7876542 223788887 55777776543
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=296.44 Aligned_cols=207 Identities=23% Similarity=0.371 Sum_probs=176.3
Q ss_pred chhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHH
Q 010056 233 TMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVES 312 (519)
Q Consensus 233 ~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~ 312 (519)
.+...+..|+++|+++.+|+++++.+|.++.. ++.+++.||..+|++.++|.++|.++|++|+++++ +++++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 35667788888888888899999999988743 56788888888999999999999999999998886 78888888
Q ss_pred HHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCc
Q 010056 313 LLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFF 391 (519)
Q Consensus 313 L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s 391 (519)
|+++|++.+++..++ .++|++++++.++++.++.+|.. +||+
T Consensus 120 L~~lGl~~~~i~~ll-------------------------------------~~~P~lL~~s~e~i~~~v~~L~~~lGfS 162 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVL-------------------------------------YCCPEIFTMRQQDINDTVRLLKEKCLFT 162 (335)
T ss_dssp HHHTTCTTTTHHHHH-------------------------------------HHCGGGGTSCHHHHHHHHHHHHHTSCCC
T ss_pred HHHcCCCHHHHHHHH-------------------------------------HhCchhhccChHHHHHHHHHHHHHcCCC
Confidence 877777766655544 44555555566667788888875 9999
Q ss_pred HHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHHHHcCC-------------
Q 010056 392 LQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGL------------- 458 (519)
Q Consensus 392 ~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L~~kGl------------- 458 (519)
.++|..||.++|++|++|.++|++|++||+++||+++++|++ |.+|+||++ ||+|||.||+..|.
T Consensus 163 ~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~ 240 (335)
T 4fp9_B 163 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP 240 (335)
T ss_dssp HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSC
T ss_pred HHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCC
Confidence 999999999999999999999999999999999999999997 999999999 99999999999998
Q ss_pred CCCcchhhccChHHHHHHHhhcccc
Q 010056 459 QCSLSWLLNCSDEKFKERMNYDTID 483 (519)
Q Consensus 459 ~~sl~~~l~~sd~~F~~r~v~~~~~ 483 (519)
+++|.+++.+||+.||+++++.+.+
T Consensus 241 npsL~~il~~sd~~F~~~vA~~s~e 265 (335)
T 4fp9_B 241 NPLLKDILRVSEAEFLARTACTSVE 265 (335)
T ss_dssp CCCHHHHTTSCHHHHHHHTSCCCHH
T ss_pred CccHHHHHcCCHHHHHHHHHhcCHH
Confidence 3578999999999999999865443
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.8e-34 Score=288.33 Aligned_cols=217 Identities=20% Similarity=0.313 Sum_probs=201.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHH
Q 010056 163 IPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLV 242 (519)
Q Consensus 163 ~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~ 242 (519)
.++++||.++|++.++|.+....+|.+|+.+++.++.|+++||+++|++.++|++++.++|.+|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 5899999999999999988888888889999999999999999999999999999999999999999998 999999999
Q ss_pred HhCCChhHHHHHHhhCccccccccccchhhHHHHH-HHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCc
Q 010056 243 GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL-ESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKE 321 (519)
Q Consensus 243 ~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L-~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~ 321 (519)
++|++.++|++++.++|++|+++++ +++|+++|| .++|++.+++.+++.++|.+++++.+ ++++++++
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~--------- 153 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKV--------- 153 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHH---------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHH---------
Confidence 9999999999999999999999999 599999999 58999999999999999999999976 45544443
Q ss_pred cHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHHHHHHHH
Q 010056 322 ALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQVRQIVV 400 (519)
Q Consensus 322 ~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~I~~mv~ 400 (519)
+...+||+.+++.+++.++|+++++|.++++.+++||.+ +|++.++| .
T Consensus 154 ---------------------------l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i----~ 202 (270)
T 3m66_A 154 ---------------------------YRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHII----V 202 (270)
T ss_dssp ---------------------------HHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHH----H
T ss_pred ---------------------------HHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHH----H
Confidence 335788889999999999999999999999999999987 99999987 7
Q ss_pred hcCchhccCHHHHHHHHHHHHH
Q 010056 401 ECPQVLALNLDIMKLSFDYFQR 422 (519)
Q Consensus 401 r~P~lL~~S~e~Lk~k~~fL~~ 422 (519)
++|++|+||.++|+||+.|+..
T Consensus 203 ~~P~~l~~Sleri~pR~~~l~~ 224 (270)
T 3m66_A 203 KFPQVFNTRLFKVKERHLFLTY 224 (270)
T ss_dssp HCGGGGGSCHHHHHHHHHHHHH
T ss_pred hCchHhhCCHHHHHHHHHHHHH
Confidence 9999999999999999999976
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=234.97 Aligned_cols=182 Identities=16% Similarity=0.254 Sum_probs=162.9
Q ss_pred chHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHH
Q 010056 197 DLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEY 276 (519)
Q Consensus 197 ~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~ 276 (519)
++...+.+|.++|+++++|++++.++|.++.. ++.+++.||..+|++.++|+++|.++|++|+++++ +|+++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 46778889999999999999999999998754 46788999999999999999999999999999997 69999999
Q ss_pred HHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCC
Q 010056 277 LESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSS 356 (519)
Q Consensus 277 L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s 356 (519)
|+++|++.+++++++.++|++|+++.+ ++..++.+| ...+||+
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L------------------------------------~~~lGfS 162 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL------------------------------------KEKCLFT 162 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHH------------------------------------HHTSCCC
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHH------------------------------------HHHcCCC
Confidence 999999999999999999999999876 555554443 3578889
Q ss_pred hhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCC
Q 010056 357 SKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQR 426 (519)
Q Consensus 357 ~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~ 426 (519)
.+++.+||.++|++|.+|.++++.|++||.+ ||++.++| ++ |++|+||+++|++|..||.. +|+
T Consensus 163 ~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eI----vk-P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 163 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDI----VK-SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHH----HH-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred HHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHc----cc-cchhhccHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999999998 99999998 34 99999999999999999987 776
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.21 E-value=2e-10 Score=101.17 Aligned_cols=164 Identities=24% Similarity=0.422 Sum_probs=120.2
Q ss_pred hhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhhhcChhHHHHhHHHHHH-hCCcHHH
Q 010056 316 FSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVVNASNSAVTRHVDFLKS-CGFFLQQ 394 (519)
Q Consensus 316 lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL~~s~~~l~~kv~fL~~-lG~s~e~ 394 (519)
+|+.++-+..++.+.|+++.+.+-. ++.+..++ ..+|+++....+++..+|.++......+.+.+..|++ +-|+.++
T Consensus 43 lglnpepvcvvlkkspqllklpimq-mrkrssyl-qklglgegklkrvlyccpeiftmrqqdindtvrllkekclftvqq 120 (239)
T 4fzv_B 43 LGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQ 120 (239)
T ss_dssp HCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCCHHH
T ss_pred hcCCCCceEEEecCCHHHhcChHHH-HHHHHHHH-HHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhhHHH
Confidence 3444444444444444444443321 11122222 3444444455555556666666666677888889997 8899999
Q ss_pred HHHHHHhcCchhccCHHHHHHHHHHHHHHhCCChhhHhhcCcccccCccccchHHHHHHHHcCC-------------CCC
Q 010056 395 VRQIVVECPQVLALNLDIMKLSFDYFQREMQRPLDDLVVFPAFFTYGLESTIKPRHKMIARKGL-------------QCS 461 (519)
Q Consensus 395 I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~~~~i~~~P~~L~ySLekRI~PR~~~L~~kGl-------------~~s 461 (519)
+.+++..||.+|.-++..+.-|+.|-.-.||+..-+|++. .||.|||. +|+.||-+|...|. ++-
T Consensus 121 vtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpl 198 (239)
T 4fzv_B 121 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL 198 (239)
T ss_dssp HHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCC
T ss_pred HHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChH
Confidence 9999999999999999999999999888899999999985 89999998 79999999998775 234
Q ss_pred cchhhccChHHHHHHHhhcccc
Q 010056 462 LSWLLNCSDEKFKERMNYDTID 483 (519)
Q Consensus 462 l~~~l~~sd~~F~~r~v~~~~~ 483 (519)
+..++..|+..|.+|-..+..+
T Consensus 199 lkdilrvseaeflartactsve 220 (239)
T 4fzv_B 199 LKDILRVSEAEFLARTACTSVE 220 (239)
T ss_dssp HHHHHTSCHHHHHHHTSCSCHH
T ss_pred HHHHHHHhHHHHHHHHhcccHH
Confidence 6789999999999987766554
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.70 E-value=1.4e-07 Score=83.14 Aligned_cols=148 Identities=19% Similarity=0.351 Sum_probs=130.6
Q ss_pred hHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCccccccccccchhhHHHHH
Q 010056 162 MIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYL 241 (519)
Q Consensus 162 l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL 241 (519)
+..++.-+.-+|+.++-+.-++.+.|++|..... +++.+-.||+.+|+....+.+++-.+|.|++++.. .+...|..|
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll 110 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL 110 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence 5566777778999999999999999999999876 78899999999999999999999999999998864 688899999
Q ss_pred HH-hCCChhHHHHHHhhCccccccccccchhhHHHHHH-HhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhc
Q 010056 242 VG-IGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLE-SLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSV 318 (519)
Q Consensus 242 ~~-lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~-~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv 318 (519)
++ +-++..++.+++..+|.++.-++. .++-+++|.. .+|+...+|.+ ...|.+++. +++.+.-+|..+|-
T Consensus 111 kekclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivk-----seylqyslt-kikqrhiylerlgr 182 (239)
T 4fzv_B 111 KEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLT-KIKQRHIYLERLGR 182 (239)
T ss_dssp HHHSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHH-HHHHHHHHHHHHTC
T ss_pred HHhHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhH-----HHHHHHHHH-HHHHHHhHHHHhcc
Confidence 96 578999999999999999999888 7999998886 89999888754 456788887 89999999998874
No 9
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=88.24 E-value=3.3 Score=41.81 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=24.5
Q ss_pred HHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCcccc
Q 010056 108 LQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDI 147 (519)
Q Consensus 108 L~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i 147 (519)
|..+|.+.+.+.++. |.....+...=+-|..+||++++|
T Consensus 8 l~~lgys~~q~~k~k-~~~~s~va~~h~~l~~~g~t~~~i 46 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIK-PKVRSTVAQHHEALVGHGFTHAHI 46 (463)
T ss_dssp GGGGTCCHHHHHHHC-GGGHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhccCHHHHHHhh-HHHHHHHHHHHHHHHhcCCCHHHH
Confidence 455777766665552 333344445556777888888887
No 10
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=87.72 E-value=0.71 Score=47.20 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCccccccCCcccccccccchHHHHHHHh
Q 010056 132 ERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLG 170 (519)
Q Consensus 132 ~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L~ 170 (519)
..|..|.++||+++++.+- |.... ++....++||-
T Consensus 170 ~~i~~l~~MGf~~~~~~~A---L~a~~-nn~~~A~e~L~ 204 (368)
T 1oqy_A 170 TMLTEIMSMGYERERVVAA---LRASY-NNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHTTTCCSHHHHHH---HHHSC-SSTTHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 4467777777777666432 22222 24666667764
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=80.11 E-value=4 Score=29.68 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=16.8
Q ss_pred hHHHHHHHhhCCCChhHHHHHHhh
Q 010056 162 MIPVLDYLGKLGVRKSTFTEFLRR 185 (519)
Q Consensus 162 l~p~l~~L~~lGls~~~i~~ll~~ 185 (519)
+..+++||++-|++.++|...+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 556777777777777777766654
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=78.13 E-value=1.1 Score=45.71 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=30.4
Q ss_pred hhhHHHHHHHhCCChhHHHHHHhhCccccccccccchhhHHHHHHHhCCCh
Q 010056 234 MSTSVAYLVGIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLESLGIPR 284 (519)
Q Consensus 234 l~p~v~fL~~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~lG~~~ 284 (519)
....|.-|.++|+++.++.+.|... .++....++||.+ |++.
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~--------~nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS--------CSSTTHHHHTTTT-SSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh-CCCc
Confidence 5667888888999998888887653 2266778888853 5553
No 13
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=73.43 E-value=10 Score=32.09 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=53.7
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhh-cCCccHHHHHhhCCcccccCcchhhhhHHHhh
Q 010056 271 KPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFS-VRKEALPVVVAQYPEIIGIDLKPKLLGQQSLL 349 (519)
Q Consensus 271 ~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lG-v~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L 349 (519)
+..+.-|.++|++...+.+.+..+.. +.+..++||..+. +
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L------------------------------- 49 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQL------------------------------- 49 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchh-------------------------------
Confidence 45678888999999988888776542 4666778876431 0
Q ss_pred hhhcCCChhhHHHHHHhhhhhhhcChh---HHHHhHHHHHHhCCcHHHHHHHHHhcCc
Q 010056 350 NSAIDSSSKDFGSIVEKMPQVVNASNS---AVTRHVDFLKSCGFFLQQVRQIVVECPQ 404 (519)
Q Consensus 350 ~~~lG~s~~~~~~~v~k~P~iL~~s~~---~l~~kv~fL~~lG~s~e~I~~mv~r~P~ 404 (519)
...|++...+...+... ..+.. .-...+.-|.+|||+.++++++++.+-.
T Consensus 50 -~d~~~d~~~~e~~l~~~----~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~n 102 (118)
T 4ae4_A 50 -CEKGFDPLLVEEALEMH----QCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNN 102 (118)
T ss_dssp -HHTTCCHHHHHHHHHHC----SSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred -cccCCChhhhHHHHHhc----cCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 11222222222222111 01111 1234678888999999999988877643
No 14
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=68.58 E-value=7.5 Score=29.73 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=17.2
Q ss_pred hHHHHHHHhhCCCChhHHHHHHhhc
Q 010056 162 MIPVLDYLGKLGVRKSTFTEFLRRY 186 (519)
Q Consensus 162 l~p~l~~L~~lGls~~~i~~ll~~~ 186 (519)
+..+++||++-|++.++|...+.+.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4566777777777777777766653
No 15
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=67.60 E-value=39 Score=37.13 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=69.3
Q ss_pred HHHHHHHHHHH-hCCCCccccccCCcccccccccchHHHHH---HHh-hCCCChhHHHHHHhhcCcccccccccchHHHH
Q 010056 128 EVMRERVDFLH-NLGLTIEDINNYPLVLGCSVKKNMIPVLD---YLG-KLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVV 202 (519)
Q Consensus 128 d~v~~~l~~L~-~lGls~~~i~~~P~lL~~s~~~~l~p~l~---~L~-~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v 202 (519)
+.|...+..|. .+||+++|+.+--.--+ ....+..+.+ .|. ..||+.++|.+|-...---=.. ..+...+
T Consensus 206 ~av~~l~~~L~~~~~ls~~qVvaIAsn~g--GkqALeaV~~~lp~l~~~~gls~~qvVaIAsn~GGkQAL---eaV~~ll 280 (1047)
T 3ugm_A 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDG--GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL---ETVQRLL 280 (1047)
T ss_dssp HHHHHHSHHHHHSSCCCHHHHTTTTTSTT--HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHH---HHHHHHS
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHhhccc--hHHHHHHHHHhhhhhhhccCCCHHHHHHHHhcCcchHHH---HHHHHHh
Confidence 34444455565 38888888742100000 0011233322 222 4788888888877643110000 0111222
Q ss_pred HHHH-hcCCCCCChhHHhhhCccccccccccchhhHHHHHH-HhCCChhHHHHHHhhCccccccccccchhhHHHHHH-H
Q 010056 203 KYLQ-GLDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLV-GIGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLE-S 279 (519)
Q Consensus 203 ~fL~-~lG~s~~~I~~il~~~P~lL~~s~e~~l~p~v~fL~-~lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~-~ 279 (519)
--|- ..|+++++|.+|-..+---= -+ +++..-.-.|+ ..|+++.+|..|-.++-.--. ++ .+...+-.|. +
T Consensus 281 p~L~~~~gls~~qvvaIAsn~GGkQ--AL-etV~~llp~L~~~~gltp~qvVaIAsn~GGkQA--Le-~V~~llpvL~~~ 354 (1047)
T 3ugm_A 281 PVLCQAHGLTPDQVVAIASHGGGKQ--AL-ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA--LE-TVQRLLPVLCQA 354 (1047)
T ss_dssp HHHHHHHCCCHHHHHHHHSSTTHHH--HH-HHHHHHHHHHHHHTCCCHHHHHHHHSSSSCHHH--HH-HHHHHHHHHHTT
T ss_pred hhhhccccCCHHHHHHHHhcCchHH--HH-HHHHHHHHHHHhhcCCCHHHheeecccCccHHH--HH-HHHHHhhhhhhh
Confidence 2222 36788888777664332100 00 12222223333 357777777777655432110 11 1222223333 4
Q ss_pred hCCChHHHHHHH
Q 010056 280 LGIPRLAVARLI 291 (519)
Q Consensus 280 lG~~~~~i~~iI 291 (519)
.|+++++|..|-
T Consensus 355 ~gls~~qvVaIA 366 (1047)
T 3ugm_A 355 HGLTPDQVVAIA 366 (1047)
T ss_dssp SCCCHHHHHHHH
T ss_pred ccCCHHHhhhhh
Confidence 677777766554
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=65.53 E-value=12 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred hhhhhhcChhHHHHhHHHHHHhCCcHHHHHHHHHhc
Q 010056 367 MPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVEC 402 (519)
Q Consensus 367 ~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~ 402 (519)
.|.+-.. .+.+|+.||.+-|++.++|..++.+.
T Consensus 22 dp~V~~s---p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 22 NSRVRQS---PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CTTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred ChhhhcC---CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4555444 46789999999999999999888763
No 17
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=56.39 E-value=38 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHHhCCChhHHHHHHhh
Q 010056 237 SVAYLVGIGVSRREIGGVLTR 257 (519)
Q Consensus 237 ~v~fL~~lGv~~~~I~~ll~~ 257 (519)
.|.-|.+.|++...+.+.+..
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~ 31 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKA 31 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 345555556666655555544
No 18
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=52.79 E-value=32 Score=28.85 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=47.3
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCC-CccccccCCcccccccccchHHHHHHH--hhCCCChhHHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGL-TIEDINNYPLVLGCSVKKNMIPVLDYL--GKLGVRKSTFTE 181 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGl-s~~~i~~~P~lL~~s~~~~l~p~l~~L--~~lGls~~~i~~ 181 (519)
..||+.-|++.+...-...|.+.+.+ .+++..+|. +..++-+ .+. +...-| ..-.++.+++..
T Consensus 22 ~~~L~~~gi~~~~~di~~~~~~~~eL---~~~l~~~g~~~~~~l~n------~~~-----~~~k~l~l~~~~ls~~~~~~ 87 (121)
T 3rdw_A 22 LALVEQQGITPQVVLYLETPPSVDKL---KELLQQLGFSDARQLMR------TKE-----DLYKTLNLDDRGLTQDQLLQ 87 (121)
T ss_dssp HHHHHTTTCCCEEECTTTSCCCHHHH---HHHHHHTTCSSGGGGBC------TTS-----HHHHHTTTTCTTCCHHHHHH
T ss_pred HHHHHHcCCCcEEEeeccCCCcHHHH---HHHHHhcCCcCHHHHhc------CCC-----hhhhhcCcccccCCHHHHHH
Confidence 57888888887665544456666666 677788887 5544421 110 011111 112457788888
Q ss_pred HHhhcCcccccccc
Q 010056 182 FLRRYPQVLHSSVV 195 (519)
Q Consensus 182 ll~~~P~iL~~s~~ 195 (519)
++..+|.++...+.
T Consensus 88 lm~~~p~LikRPIv 101 (121)
T 3rdw_A 88 AMADNPKLIERPIV 101 (121)
T ss_dssp HHHHCGGGBCCCEE
T ss_pred HHHhCccceeCCEE
Confidence 88888888877754
No 19
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=48.60 E-value=21 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=26.4
Q ss_pred hhhhhhcChhHHHHhHHHHHHhCCcHHHHHHHHHhc
Q 010056 367 MPQVVNASNSAVTRHVDFLKSCGFFLQQVRQIVVEC 402 (519)
Q Consensus 367 ~P~iL~~s~~~l~~kv~fL~~lG~s~e~I~~mv~r~ 402 (519)
.|.+-.. .+.+|+.||++-|++.+||..++.+.
T Consensus 27 dp~V~~s---p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 27 NSRVRQS---PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp STTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ChhhhhC---CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4555444 36789999999999999999988874
No 20
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=46.86 E-value=25 Score=29.46 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=48.1
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCccccccCCcccccccccchHHHHHHH--h-h-CCCChhHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYL--G-K-LGVRKSTFT 180 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L--~-~-lGls~~~i~ 180 (519)
..||+.-|++.+...-...|.+.+.+ .+++..+|++..++-+ .+. +...-| . . -.++.+++.
T Consensus 20 ~~~L~~~gi~~~~~di~~~~~~~~eL---~~~l~~~g~~~~~l~n------~~~-----~~~k~l~l~~~~~~ls~~~~~ 85 (120)
T 3fz4_A 20 KAELDDLAWDYDAIDIKKNPPAASLI---RNWLENSGLELKKFFN------TSG-----QSYRALGLKDKLHQLSLDEAA 85 (120)
T ss_dssp HHHHHHHTCCEEEEETTTSCCCHHHH---HHHHHHSCCCGGGGBC------TTS-----HHHHHTTHHHHGGGCCHHHHH
T ss_pred HHHHHHcCCceEEEEeccCchhHHHH---HHHHHHcCCCHHHHhC------CCC-----cchhhcCcccccccCCHHHHH
Confidence 57888888887665544456666665 6777888877665531 110 011111 1 1 146788888
Q ss_pred HHHhhcCcccccccc
Q 010056 181 EFLRRYPQVLHSSVV 195 (519)
Q Consensus 181 ~ll~~~P~iL~~s~~ 195 (519)
.++..+|.++...+.
T Consensus 86 ~lm~~~p~LikRPIv 100 (120)
T 3fz4_A 86 NLLASDGMLIKRPLL 100 (120)
T ss_dssp HHHHHCGGGBCSCEE
T ss_pred HHHHhChheEeccEE
Confidence 889999988877754
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.28 E-value=22 Score=24.92 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHH
Q 010056 378 VTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQR 422 (519)
Q Consensus 378 l~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~ 422 (519)
-..+++-|.+|||+.+++...+..+=. + +..-++||..
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~----n---~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYN----N---PHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTS----C---SHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC----C---HHHHHHHHHh
Confidence 456788999999999999888876532 2 3344566654
No 22
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=46.25 E-value=33 Score=28.71 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=48.7
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCccccccCCcccccccccchHHHHHHH--hh--CCCChhHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYL--GK--LGVRKSTFT 180 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L--~~--lGls~~~i~ 180 (519)
..||+.-|++.+...-...|.+.+.+ .+++..+|++..++-+ .+. +...-| .+ -.++.+++.
T Consensus 21 ~~~L~~~gi~~~~~di~~~~~~~~eL---~~~l~~~g~~~~~l~n------~~~-----~~~k~l~l~~k~~~ls~~~~~ 86 (120)
T 3gkx_A 21 KKWLIENNIEYTNRLIVDDNPTVEEL---KAWIPLSGLPVKKFFN------TSG-----VVYKELKLSSKLPTMTEEEQI 86 (120)
T ss_dssp HHHHHHTTCCCEEEETTTTCCCHHHH---HHHHHHHTSCGGGGBC------TTS-----HHHHHTTHHHHGGGSCHHHHH
T ss_pred HHHHHHcCCceEEEecccCcCCHHHH---HHHHHHcCCCHHHeEe------CCC-----chhhhcCcchhcccCCHHHHH
Confidence 57888888887765554456666666 6777778877665531 110 011111 11 245788888
Q ss_pred HHHhhcCcccccccc
Q 010056 181 EFLRRYPQVLHSSVV 195 (519)
Q Consensus 181 ~ll~~~P~iL~~s~~ 195 (519)
.++..+|.++...+.
T Consensus 87 ~lm~~~p~LikRPiv 101 (120)
T 3gkx_A 87 ALLATNGKLVKRPLV 101 (120)
T ss_dssp HHHTTCGGGBCSCEE
T ss_pred HHHHhChhheECcEE
Confidence 899999998887764
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=43.69 E-value=17 Score=24.58 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.9
Q ss_pred HhHHHHHHhCCcHHHHHHHHHhc
Q 010056 380 RHVDFLKSCGFFLQQVRQIVVEC 402 (519)
Q Consensus 380 ~kv~fL~~lG~s~e~I~~mv~r~ 402 (519)
.+++-|.+|||+.+++.+.+..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 56788999999999988777664
No 24
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=42.65 E-value=8.4 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHH-hCCCCcccc
Q 010056 127 VEVMRERVDFLH-NLGLTIEDI 147 (519)
Q Consensus 127 ~d~v~~~l~~L~-~lGls~~~i 147 (519)
.+.|+..+-.|. .+||+++++
T Consensus 341 Le~V~~llpvL~~~~gls~~qv 362 (1047)
T 3ugm_A 341 LETVQRLLPVLCQAHGLTPDQV 362 (1047)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHhhhhhhhccCCHHHh
Confidence 455555556666 488888886
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.23 E-value=44 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=12.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhC
Q 010056 272 PFVEYLESLGIPRLAVARLIEKK 294 (519)
Q Consensus 272 p~v~~L~~lG~~~~~i~~iI~~~ 294 (519)
..|+-|.++|++++.+.+.++.+
T Consensus 10 ~~i~~L~~MGF~~~~a~~AL~~~ 32 (49)
T 1ify_A 10 TMLTEIMSMGYERERVVAALRAS 32 (49)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44555566666666655555543
No 26
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=40.20 E-value=22 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHhCCcHHHHHHHHHh
Q 010056 377 AVTRHVDFLKSCGFFLQQVRQIVVE 401 (519)
Q Consensus 377 ~l~~kv~fL~~lG~s~e~I~~mv~r 401 (519)
.....++-|+++||+.+++.+.+..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4557788999999999998776643
No 27
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.30 E-value=35 Score=24.62 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcC
Q 010056 273 FVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVR 319 (519)
Q Consensus 273 ~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~ 319 (519)
-++-|.++|++++.+.+.+.+.- .+.+++.++||.+++++
T Consensus 12 mlq~L~eMGFd~erae~Alk~Tg-------~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQTG-------SRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT-------SCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-------cccHHHHHHHHHHhcCC
Confidence 35566666666665555554322 12466777777666654
No 28
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=37.97 E-value=29 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=18.4
Q ss_pred HHhHHHHHHhCCcHHHHHHHHHhc
Q 010056 379 TRHVDFLKSCGFFLQQVRQIVVEC 402 (519)
Q Consensus 379 ~~kv~fL~~lG~s~e~I~~mv~r~ 402 (519)
..+++-|.+|||+.+++.+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 356788888999998887776654
No 29
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=37.03 E-value=49 Score=27.53 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=53.6
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCccccccCCcccccccccchHHHHHHH--hhCCCChhHHHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYL--GKLGVRKSTFTEF 182 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L--~~lGls~~~i~~l 182 (519)
..||++.|++.....-...|.+.+.+ .+++...|++..++-+ .+. +...-| ..-.++.+++..+
T Consensus 17 ~~~L~~~gi~~~~~di~~~~~~~~el---~~~l~~~~~~~~~l~n------~~~-----~~~k~l~~~~~~ls~~~~~~~ 82 (120)
T 3l78_A 17 RAWLNRHDVVFQEHNIMTSPLSRDEL---LKILSYTENGTEDIIS------TRS-----KVFQKLDIDVDELSVSELINL 82 (120)
T ss_dssp HHHHHHTTCCEEEEETTTSCCCHHHH---HHHHHHCSSTHHHHBC------TTC-----HHHHHTTCCGGGCCHHHHHHH
T ss_pred HHHHHHcCCCeEEEecccCCCcHHHH---HHHHhhcCCCHHHhhc------CCc-----HHHHHcCCCcccCCHHHHHHH
Confidence 57888888887654444445666665 6667777777655421 000 001111 1123577788888
Q ss_pred HhhcCcccccccccchHHHHHHHHhcCCCCCChhHHh
Q 010056 183 LRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVL 219 (519)
Q Consensus 183 l~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il 219 (519)
+..+|.++...+..+ ... .-+|++++++..++
T Consensus 83 m~~~p~LikRPiv~~-~~~----~~vG~~~e~~~~~l 114 (120)
T 3l78_A 83 ISKNPSLLRRPIIMD-NKR----MQIGFNEDEIRAFL 114 (120)
T ss_dssp HHHCGGGBCSCEEEC-SSC----EEESCCTTGGGGGS
T ss_pred HHhCccceeccEEEE-CCE----EEecCCHHHHHHHh
Confidence 888888887775421 000 12566666665544
No 30
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=36.03 E-value=36 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=19.5
Q ss_pred HHHhHHHHHHhCCcHHHHHHHHHh
Q 010056 378 VTRHVDFLKSCGFFLQQVRQIVVE 401 (519)
Q Consensus 378 l~~kv~fL~~lG~s~e~I~~mv~r 401 (519)
+...+..|.++||+.+++.+.+..
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567788999999999999776643
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=35.07 E-value=34 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=25.5
Q ss_pred hHHHHhHHHHHHhCC-cHHHHHHHHHhcCchhccCHHHHHHHHHHHHH
Q 010056 376 SAVTRHVDFLKSCGF-FLQQVRQIVVECPQVLALNLDIMKLSFDYFQR 422 (519)
Q Consensus 376 ~~l~~kv~fL~~lG~-s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~ 422 (519)
+....+++-|++||| +.+.+..++..+=. .+..-++||..
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~g-------nve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATGG-------DINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHTS-------CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCC-------CHHHHHHHHHH
Confidence 456778889999999 77776666554321 34444566553
No 32
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=34.22 E-value=48 Score=28.55 Aligned_cols=100 Identities=14% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCccccccCCcccccccccchHHHHHHH--hhCCCChhHHHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYL--GKLGVRKSTFTEF 182 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L--~~lGls~~~i~~l 182 (519)
..||++-|++.....-...|.+.+.+ .+++...|++..++-+ .+ .+...-| ..-.++.+++..+
T Consensus 19 k~~L~~~gi~~~~idi~~~~~~~~eL---~~~~~~~g~p~~~l~n------~~-----~~~yk~l~l~~~~ls~~~~~~l 84 (141)
T 1s3c_A 19 LEMIRNSGTEPTIILYLENPPSRDEL---VKLIADMGISVRALLR------KN-----VEPYEQLGLAEDKFTDDQLIDF 84 (141)
T ss_dssp HHHHHHTTCCCEEECTTTSCCCHHHH---HHHHHHHTSCHHHHBC------SS-----SHHHHHTTTTSSCCCHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCCCCccHHHH---HHHhcccCCCHHHhcc------CC-----chhHHhcCCccccCCHHHHHHH
Confidence 46777777776654444445555555 4555666665444321 00 0011111 1123677778888
Q ss_pred HhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCc
Q 010056 183 LRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYP 223 (519)
Q Consensus 183 l~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P 223 (519)
+..+|.++...+..+ ... .-+|.+++++..++.+.+
T Consensus 85 m~~~P~LikRPiv~~-~~~----~~vG~~~e~i~~~l~~~~ 120 (141)
T 1s3c_A 85 MLQHPILINRPIVVT-PLG----TRLCRPSEVVLDILQDAQ 120 (141)
T ss_dssp HHHSGGGBCSCEEEE-TTE----EEECSSGGGGGGTCSSCC
T ss_pred HHhCccceEccEEEE-CCE----EEEECCHHHHHHHhCccc
Confidence 888888777765421 000 015666666666654444
No 33
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=33.40 E-value=39 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHhHHHHHHhCCcHHHHHHHHH
Q 010056 377 AVTRHVDFLKSCGFFLQQVRQIVV 400 (519)
Q Consensus 377 ~l~~kv~fL~~lG~s~e~I~~mv~ 400 (519)
.....+.-|.++||+.+++.+.+.
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHH
Confidence 456678999999999999987664
No 34
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.90 E-value=32 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=26.9
Q ss_pred HhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHH
Q 010056 380 RHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQRE 423 (519)
Q Consensus 380 ~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~ 423 (519)
++++-|++|||+.+++.+++..+=. .+..-++||...
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~-------nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGN-------NLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTS-------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHHC
Confidence 5578899999999999877766521 355557787764
No 35
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.23 E-value=29 Score=26.66 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHH
Q 010056 378 VTRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQR 422 (519)
Q Consensus 378 l~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~ 422 (519)
...+++-|++|||+.+++...+.++= . .+..-++||..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~----~---nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD----D---DLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT----S---CHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC----C---CHHHHHHHHHH
Confidence 45678899999999999988887642 2 34445677764
No 36
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.56 E-value=33 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHhHHHHHHhCCcHHHHHHHHHhc
Q 010056 379 TRHVDFLKSCGFFLQQVRQIVVEC 402 (519)
Q Consensus 379 ~~kv~fL~~lG~s~e~I~~mv~r~ 402 (519)
..+++-|.+|||+.+.+.+.+..+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 355788999999999998888776
No 37
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=29.35 E-value=2.9e+02 Score=28.00 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=120.8
Q ss_pred HHhCCCCccccccCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhcCcccccccccchHHHHHHHHhcCCCCCChh
Q 010056 137 LHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIP 216 (519)
Q Consensus 137 L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~ 216 (519)
|.-+|.|++++.+-- ..+..++..--+-|...||+..+|..+-++ |+-|..= ..+....+.-| -+++.++|.
T Consensus 8 l~~lgys~~q~~k~k----~~~~s~va~~h~~l~~~g~t~~~i~~is~~-~~al~~v-a~~y~~l~aal--~~lt~~~iV 79 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIK----PKVRSTVAQHHEALVGHGFTHAHIVALSQH-PAALGTV-AVKYQDMIAAL--PEATHEAIV 79 (463)
T ss_dssp GGGGTCCHHHHHHHC----GGGHHHHHHHHHHHHHTTCCHHHHHHHTTS-THHHHHH-HTTHHHHHHHS--TTCCHHHHH
T ss_pred HHHhccCHHHHHHhh----HHHHHHHHHHHHHHHhcCCCHHHHHHhhcc-HhHHHHH-HHhhHHHHhhc--cccCHHHHH
Confidence 456788888776421 111223444456677899999999876554 4433221 11222122211 356777777
Q ss_pred HHhhhCccccccccccchhhHHHHHHH--hCCChhHHHHHHhhCccccccccccchhhHHHHHHH--hCCChHHHHHHHH
Q 010056 217 RVLERYPEVLGFKLEGTMSTSVAYLVG--IGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYLES--LGIPRLAVARLIE 292 (519)
Q Consensus 217 ~il~~~P~lL~~s~e~~l~p~v~fL~~--lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L~~--lG~~~~~i~~iI~ 292 (519)
.+-..+-...... .+.+...-|+. +|++..+|.+|..+- .-- -++ .+.....-|.. ++++++++.++-.
T Consensus 80 ~ia~~~~g~~Al~---a~~~~~~~L~~~p~~l~~~qiv~IA~~G-g~~--Ale-av~~~~~~L~~apl~Lsp~qvVaIAs 152 (463)
T 4hpz_A 80 GVGKQWSGACALE---ALLTVAGELRGPPLQLDTGQLLKIAKRG-GVT--AVE-VHHTWRNALTGAPLNLTPDQVVAIAS 152 (463)
T ss_dssp HHHTSTTTTHHHH---HHHHHHHHHHSTTTCCCHHHHHHHHHHH-HHH--HHH-HHHHTHHHHHSTTTCCCHHHHHHHHS
T ss_pred HHHhccchHHHHH---HHHHHHHHhhcCccCCCHHHHHHHHhhC-cHH--HHH-HHHHHHHHHhCCCcCCCHHHHHHHHh
Confidence 7766554333221 23444444553 388888888886531 100 001 12222223332 5888888877654
Q ss_pred hCCcccccccccchhhhHHHHHh-hhcCCccHHHHHhhCCcccccCcchhhhhHHHhhhhhcCCChhhHHHHHHhhhhhh
Q 010056 293 KKPYILGFGLEERVKPNVESLLE-FSVRKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNSAIDSSSKDFGSIVEKMPQVV 371 (519)
Q Consensus 293 ~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~~lG~s~~~~~~~v~k~P~iL 371 (519)
....-=.+ + .+......|.. +|+++.++..+-...-.-=. + +.+......+....|++++++..+-...--
T Consensus 153 n~GGkqAL--e-aV~~llpvL~~a~~Ls~~qVVaIAsn~GGkQA--L-eaV~~llpvl~~~~~Ls~aqVVaIAsn~GG-- 224 (463)
T 4hpz_A 153 NIGGKQAL--E-TVQRLLPVLCQDHGLTPQQVVAIASNGGGKQA--L-ETVQRLLPVLCQAHGLTPDQVVAIASHDGG-- 224 (463)
T ss_dssp STTHHHHH--H-HHHHHHHHHHHHHCCCHHHHHHHHTSTTHHHH--H-HHHHHHHHHHHHHHCCCHHHHHHHHSSTTH--
T ss_pred cCccHHHH--H-HHHHHHHHHhhhcCCCHHHHHHHhhcCchHHH--H-HHHHHHHHHhhccccCCHHHHHHHhhcccc--
Confidence 43321111 1 33334444543 78888777665433211000 0 122233444444578888887653211000
Q ss_pred hcChhHHHHhHHHHHH-hCCcHHHHHHHHH
Q 010056 372 NASNSAVTRHVDFLKS-CGFFLQQVRQIVV 400 (519)
Q Consensus 372 ~~s~~~l~~kv~fL~~-lG~s~e~I~~mv~ 400 (519)
..--+.+.+..-.|.. .||+.++|.++-.
T Consensus 225 kQALeaV~~llpvl~~~~gls~aqVVaIAs 254 (463)
T 4hpz_A 225 KQALETVQRLLPVLCQDHGLTPQQVVAIAS 254 (463)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhhhhccCCHHHHHHHhc
Confidence 0001455555666665 7999998876554
No 38
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.11 E-value=44 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhC
Q 010056 379 TRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQ 425 (519)
Q Consensus 379 ~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg 425 (519)
..+++-|.+|||+.+++.+++..+-. .+..-++||...+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCCC
Confidence 45678899999999999888887632 35556788877653
No 39
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.85 E-value=37 Score=24.43 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=18.1
Q ss_pred HHHhHHHHHHhCCcHHHHHHHHHh
Q 010056 378 VTRHVDFLKSCGFFLQQVRQIVVE 401 (519)
Q Consensus 378 l~~kv~fL~~lG~s~e~I~~mv~r 401 (519)
...+++-|+++||+.+++.+.+..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345688888999999988776643
No 40
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=28.63 E-value=97 Score=21.89 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=22.2
Q ss_pred chHHHHHHHhhCCC-ChhHHHHHHhhcCcccccccccchHHHHHHHHhc
Q 010056 161 NMIPVLDYLGKLGV-RKSTFTEFLRRYPQVLHSSVVVDLAPVVKYLQGL 208 (519)
Q Consensus 161 ~l~p~l~~L~~lGl-s~~~i~~ll~~~P~iL~~s~~~~l~p~v~fL~~l 208 (519)
.....++-|.++|| +.....+.+... ..++...++||-+.
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHc
Confidence 35556677777777 555555555432 12455566666543
No 41
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.34 E-value=44 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHH
Q 010056 379 TRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQRE 423 (519)
Q Consensus 379 ~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~ 423 (519)
..+++-|.+|||+.+++.+.++.+=. .+..-++||...
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHhC
Confidence 35678899999999999887776432 345556777653
No 42
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=28.26 E-value=3.9e+02 Score=27.35 Aligned_cols=244 Identities=16% Similarity=0.144 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHh--CCCCccccccCCcccccccccchHHH---HHHHhh-CCCChhHHHHHHhhcCcccccccccchHHH
Q 010056 128 EVMRERVDFLHN--LGLTIEDINNYPLVLGCSVKKNMIPV---LDYLGK-LGVRKSTFTEFLRRYPQVLHSSVVVDLAPV 201 (519)
Q Consensus 128 d~v~~~l~~L~~--lGls~~~i~~~P~lL~~s~~~~l~p~---l~~L~~-lGls~~~i~~ll~~~P~iL~~s~~~~l~p~ 201 (519)
+.+.....-|.. ++|++++|.+--. ......-+..+ .--|+. +|++++++..|-...--- .--..+...
T Consensus 51 ~a~~~~~~~l~~apl~ls~~qvvaIA~--n~GGkqAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GGk---qALe~V~~~ 125 (499)
T 3v6t_A 51 EAVHAWRNALTGAPLNLTPEQVVAIAS--HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK---QALETVQRL 125 (499)
T ss_dssp HHHHHTHHHHHSTTTCCCHHHHHHHHS--STTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH---HHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcCCCHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCccH---HHHHHHHHh
Confidence 344444555553 7888888742000 00001112222 233343 899999988877643110 000012223
Q ss_pred HHHHHh-cCCCCCChhHHhhhCc--cccccccccchhhHHHHHHH-hCCChhHHHHHHhhCccccccccccchhhHHHHH
Q 010056 202 VKYLQG-LDIKPNDIPRVLERYP--EVLGFKLEGTMSTSVAYLVG-IGVSRREIGGVLTRYPDILGMRVGRVIKPFVEYL 277 (519)
Q Consensus 202 v~fL~~-lG~s~~~I~~il~~~P--~lL~~s~e~~l~p~v~fL~~-lGv~~~~I~~ll~~~P~lL~~s~e~~l~p~v~~L 277 (519)
+.-|.. .|++.++|..|-..+- .-| ..+....-.|+. .|++..+|..|-.+.-.-- -++ .++.-.-.|
T Consensus 126 lpvL~~~~~Ls~~qVVaIAsn~GGkQAL-----eaV~~llpvL~~a~gls~~qVvaIAsN~GGkQ--ALe-aV~~llpvl 197 (499)
T 3v6t_A 126 LPVLCQAHGLTPEQVVAIASHDGGKQAL-----ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ--ALE-TVQRLLPVL 197 (499)
T ss_dssp HHHHHHTSCCCHHHHHHHHSSTTHHHHH-----HHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHH--HHH-HHHHHHHHH
T ss_pred hHHhhhhcCCCHHHhHHHhhcCCcHHHH-----HHHHHhhHHHHHhcCCCHHHHHHHhcccchHH--HHH-HHHHhhhhH
Confidence 333333 7888888887754221 001 123344445554 5888888888754421100 001 223333344
Q ss_pred HH-hCCChHHHHHHHHhCCcccccccccchhhhHHHHHh-hhcCCccHHHHHhhCCcccccCcchhhhh---HHHhhhhh
Q 010056 278 ES-LGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLE-FSVRKEALPVVVAQYPEIIGIDLKPKLLG---QQSLLNSA 352 (519)
Q Consensus 278 ~~-lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~l~~vI~~~P~iL~~s~~~kl~~---~~~~L~~~ 352 (519)
.+ .|++.+.|..+-....--=. ++ .+..-.-.|.. .|++.+++..|-...-. +..++. ..-.|...
T Consensus 198 ~~~~gls~~qVVaiAsn~GGkQA--Le-aV~~llp~L~~a~~ls~~qVvaIAsN~GG------kQALeaV~~~lpvl~~~ 268 (499)
T 3v6t_A 198 CQAHGLTPQQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPQQVVAIASNGGG------KQALETVQRLLPVLCQA 268 (499)
T ss_dssp HHHHCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHTTTSCCCHHHHHHHHHSSCH------HHHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHhhccchHHH--HH-HHHHhhhHHHhhcCCCHHHhhhhhcccch------HHHHHHHHHhccccccc
Confidence 43 68888888766433321000 11 33333344443 57777776665433311 122222 22233335
Q ss_pred cCCChhhHHHHHHhhhhhhhcC-----hhHHHHhHHHHHH-hCCcHHHHHHHHH
Q 010056 353 IDSSSKDFGSIVEKMPQVVNAS-----NSAVTRHVDFLKS-CGFFLQQVRQIVV 400 (519)
Q Consensus 353 lG~s~~~~~~~v~k~P~iL~~s-----~~~l~~kv~fL~~-lG~s~e~I~~mv~ 400 (519)
.|++.+++..+- +-. -+.+.+-.-.|.. .|++..+|..|-.
T Consensus 269 ~~lt~aqVVaIA-------sn~GGkQALeaV~~llpvL~~~~~L~~~qVvaIAs 315 (499)
T 3v6t_A 269 HGLTPQQVVAIA-------SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315 (499)
T ss_dssp HCCCHHHHHHHH-------SSTTHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHT
T ss_pred ccCCHHHeeeec-------cCCccHHHHHHHHHhhHHHHHhcCCCHHHHHHHhh
Confidence 788888876532 212 1445555666676 7999999876554
No 43
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=28.21 E-value=60 Score=26.97 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=42.2
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCC-ccccccCCcccccccccchHHHHHHH--hhCCCChhHHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLT-IEDINNYPLVLGCSVKKNMIPVLDYL--GKLGVRKSTFTE 181 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls-~~~i~~~P~lL~~s~~~~l~p~l~~L--~~lGls~~~i~~ 181 (519)
..||+.-|++.+...-...|.+.+.+ .+++..+|.+ ..++-+ .+. +...-| ..-.++.+++..
T Consensus 21 ~~~L~~~gi~~~~~di~~~~~t~~eL---~~~l~~~g~~~~~~l~n------~~~-----~~~k~l~l~~~~ls~~~~~~ 86 (119)
T 3f0i_A 21 LALLENQGIAPQVIKYLETSPSVEEL---KRLYQQLGLNEVRAMMR------CKE-----ELYKELNLGDSQLSDDALFA 86 (119)
T ss_dssp HHHHHHTTCCCEEECHHHHCCCHHHH---HHHHHHHTCSSGGGGBC------TTS-----HHHHHTTTTCTTCCHHHHHH
T ss_pred HHHHHHcCCceEEEEeccCcCcHHHH---HHHHHHcCCccHHHHhc------CCC-----chhhhcCcccccCCHHHHHH
Confidence 46777777776554433345555555 5666667765 444321 110 011111 112457777888
Q ss_pred HHhhcCcccccccc
Q 010056 182 FLRRYPQVLHSSVV 195 (519)
Q Consensus 182 ll~~~P~iL~~s~~ 195 (519)
++..+|.++...+.
T Consensus 87 lm~~~p~LikRPIv 100 (119)
T 3f0i_A 87 AMAEHPKLIERPIV 100 (119)
T ss_dssp HHHHCGGGBCSCEE
T ss_pred HHHhChhheeCCEE
Confidence 88888887776654
No 44
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=27.39 E-value=74 Score=27.98 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhCCCCcccc-c-cC--Cccc-ccccccchHHHHHHHhhCCCChhHHHHHHhhc
Q 010056 127 VEVMRERVDFLHNLGLTIEDI-N-NY--PLVL-GCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRY 186 (519)
Q Consensus 127 ~d~v~~~l~~L~~lGls~~~i-~-~~--P~lL-~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~ 186 (519)
.+.+..+|+.|.+.|+-++.- + .+ -.+- +.+ -..+..-|..-|++.+.|...+...
T Consensus 48 ~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G----~~~I~~eL~~KGI~~~~I~~al~~~ 108 (162)
T 3dfg_A 48 PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYG----PLHIRAELGTHGLDSDAVSAAMATF 108 (162)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCC----HHHHHHHHHHTTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc----HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345666788888888776653 2 10 0010 122 2345667788888888888888764
No 45
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=27.31 E-value=45 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHhCC-cHHHHHHHHHh
Q 010056 377 AVTRHVDFLKSCGF-FLQQVRQIVVE 401 (519)
Q Consensus 377 ~l~~kv~fL~~lG~-s~e~I~~mv~r 401 (519)
....+++-|++||| +.+.+.+++..
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45677888889999 77666555543
No 46
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.26 E-value=48 Score=26.17 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhCCC
Q 010056 379 TRHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQRP 427 (519)
Q Consensus 379 ~~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg~~ 427 (519)
..+++-|++|||+.+++.++++.+- ..+..-++||....|-.
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~~i 71 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGGSL 71 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCCCC
Confidence 4678899999999999988776543 23666789999887733
No 47
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.24 E-value=41 Score=25.00 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=28.0
Q ss_pred HhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHh
Q 010056 380 RHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREM 424 (519)
Q Consensus 380 ~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~m 424 (519)
..++-+.+|||+.+++.+.+++... ++..-+++|-..+
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~-------NvErAaDWLFSH~ 58 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGE-------NIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCS-------CHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 4588899999999999998887654 3445566665543
No 48
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=24.04 E-value=81 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCCccccc---cCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhc
Q 010056 140 LGLTIEDIN---NYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRY 186 (519)
Q Consensus 140 lGls~~~i~---~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~ 186 (519)
-|.|....- ..|..+..+.++ +...+.-|..-|+++++|+-+++-.
T Consensus 11 kG~S~S~~P~~~~~P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 11 KGISGSALPFKRRSPKWLHMTPST-VVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CCCCCCCCCSCCSCCSSCCCCHHH-HHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CCccCCCCCCCCCCCccccCCHHH-HHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 355555552 467778887765 8888888999999999999888753
No 49
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=22.91 E-value=88 Score=27.41 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCCCccccc---cCCcccccccccchHHHHHHHhhCCCChhHHHHHHhhc
Q 010056 140 LGLTIEDIN---NYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTEFLRRY 186 (519)
Q Consensus 140 lGls~~~i~---~~P~lL~~s~~~~l~p~l~~L~~lGls~~~i~~ll~~~ 186 (519)
-|.|....- ..|..+..+.++ +...+.-|..-|+++++|+-+++-.
T Consensus 9 kG~S~S~~P~~~~~P~W~~~~~ee-Ve~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 9 KGISSSAIPYSRNAPAWFKLSSES-VIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CCCCCCCCCSCCSCCSSCCSCHHH-HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCcCCCHHH-HHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 355555542 467778887765 8888888999999999999888753
No 50
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=22.32 E-value=44 Score=25.61 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=28.9
Q ss_pred CChhHHhhhCccccccccccchhhHHHHHHHhCCChhHHHHHHhhCcccc
Q 010056 213 NDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREIGGVLTRYPDIL 262 (519)
Q Consensus 213 ~~I~~il~~~P~lL~~s~e~~l~p~v~fL~~lGv~~~~I~~ll~~~P~lL 262 (519)
.+++.+|..+|.+|- .+|..+|-+.-++..+|..+|.-|
T Consensus 16 ~qlR~~vqqNP~lL~-----------~lLqqL~~~NPqL~q~I~~n~e~F 54 (72)
T 1pve_A 16 QQMRQIIQQNPSLLP-----------ALLQQIGRENPQLLQQISQHQEHF 54 (72)
T ss_dssp TTHHHHHTTCGGGHH-----------HHHHHHHTTCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHCHHHHH-----------HHHHHHHhHCHHHHHHHHHCHHHH
Confidence 467888888888774 466777877788888888777544
No 51
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.58 E-value=1.4e+02 Score=23.52 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=21.7
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhh
Q 010056 271 KPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFS 317 (519)
Q Consensus 271 ~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lG 317 (519)
.+.|+-|.++|++++.+.+++..+- .++...++||.+..
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n--------~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN--------MNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHCc
Confidence 4455666666776666665553222 24556666665543
No 52
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=21.30 E-value=4e+02 Score=23.05 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=17.8
Q ss_pred HhHHHHHHhCCcHHHHHHHHHhcC
Q 010056 380 RHVDFLKSCGFFLQQVRQIVVECP 403 (519)
Q Consensus 380 ~kv~fL~~lG~s~e~I~~mv~r~P 403 (519)
+-+.||..-||+.+.|..++...|
T Consensus 137 K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 137 KAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHHCCCCHHHHHHHHhcCc
Confidence 347899999999999987765443
No 53
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.28 E-value=1.2e+02 Score=22.35 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=20.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHh
Q 010056 272 PFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLE 315 (519)
Q Consensus 272 p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~ 315 (519)
..|+-|.+||++.+.+.+.+..+-. ++...++||.+
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~--------nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGN--------NLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTS--------CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--------CHHHHHHHHHH
Confidence 4556666677777666666554421 35555666654
No 54
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.21 E-value=87 Score=23.96 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=12.0
Q ss_pred hhHHHHHHHhCCChHHHHHHHHh
Q 010056 271 KPFVEYLESLGIPRLAVARLIEK 293 (519)
Q Consensus 271 ~p~v~~L~~lG~~~~~i~~iI~~ 293 (519)
...|+-|.+||++++.+.+.+.+
T Consensus 30 ee~I~~L~eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 30 EEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 44455555555555555555443
No 55
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.01 E-value=1.3e+02 Score=22.03 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=22.5
Q ss_pred HHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhcCCccHH
Q 010056 278 ESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSVRKEALP 324 (519)
Q Consensus 278 ~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~l~ 324 (519)
+.+|++...|.+++...+.-+..+.+ +.+...+..+++|+.++...
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~e-t~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDK-TVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTH-HHHHHHHHHHHHTCCCC---
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHHhCCCccHHH
Confidence 35677777777776655521122322 33333344556777665443
No 56
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=1.4e+02 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=21.9
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHh
Q 010056 271 KPFVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLE 315 (519)
Q Consensus 271 ~p~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~ 315 (519)
...|+-|.++|++++.+.+.+..+-. ++...++||.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~--------nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN--------SLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS--------CSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--------CHHHHHHHHHh
Confidence 34566666777777766666665421 35556666653
No 57
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=20.64 E-value=1.3e+02 Score=25.20 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHhCCCCccccCCccCCCChHHHHHHHHHHHhCCCCccccccCCcccccccccchHHHHHHH--hhCCCChhHHHHH
Q 010056 105 YDFLQGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYL--GKLGVRKSTFTEF 182 (519)
Q Consensus 105 v~yL~~~Gi~~~~l~~l~~p~~~d~v~~~l~~L~~lGls~~~i~~~P~lL~~s~~~~l~p~l~~L--~~lGls~~~i~~l 182 (519)
..||+..|++.+...-...|.+.+.+ .+++...|++..++-+ .+. +...-| ..-+++.+++..+
T Consensus 18 ~~~L~~~gi~y~~~di~~~~~~~~el---~~~l~~~~~~~~~l~n------~~~-----~~~k~l~~~~~~ls~~~~~~~ 83 (132)
T 1z3e_A 18 RAWLEEHEIPFVERNIFSEPLSIDEI---KQILRMTEDGTDEIIS------TRS-----KVFQKLNVNVESMPLQDLYRL 83 (132)
T ss_dssp HHHHHHTTCCEEEEETTTSCCCHHHH---HHHHHTCSSCGGGTBC------TTS-----HHHHHHCCCGGGSBHHHHHHH
T ss_pred HHHHHHcCCceEEEEccCCCccHHHH---HHHHHHcCCCHHHhhc------CCc-----hHHHhcCcccccCCHHHHHHH
Confidence 57888888876553332234454444 5667777776655421 110 011111 1124677888888
Q ss_pred HhhcCcccccccccchHHHHHHHHhcCCCCCChhHHhhhCc
Q 010056 183 LRRYPQVLHSSVVVDLAPVVKYLQGLDIKPNDIPRVLERYP 223 (519)
Q Consensus 183 l~~~P~iL~~s~~~~l~p~v~fL~~lG~s~~~I~~il~~~P 223 (519)
+..+|.++...+... ... .-+|++++++..++.+.+
T Consensus 84 l~~~p~likrPiv~~-~~~----~~vGf~~~~~~~~l~~~~ 119 (132)
T 1z3e_A 84 INEHPGLLRRPIIID-EKR----LQVGYNEDEIRRFLPRKV 119 (132)
T ss_dssp HHHCGGGBCSCEEEC-SSC----EEESCCTTGGGGGSCCCC
T ss_pred HHhCccceeCCEEEE-CCE----EEEcCCHHHHHHHhCchh
Confidence 888888877765421 100 015677776666654433
No 58
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.40 E-value=3e+02 Score=24.30 Aligned_cols=120 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhCCcccccccccchhhhHHHHHhhhc-CCccHHHHHhhCCcccccCcchhhhhHHHhhhh
Q 010056 273 FVEYLESLGIPRLAVARLIEKKPYILGFGLEERVKPNVESLLEFSV-RKEALPVVVAQYPEIIGIDLKPKLLGQQSLLNS 351 (519)
Q Consensus 273 ~v~~L~~lG~~~~~i~~iI~~~P~iL~~s~e~~l~~~v~~L~~lGv-~~~~l~~vI~~~P~iL~~s~~~kl~~~~~~L~~ 351 (519)
.+.+|..-.-+..++.+-+.+. +++.+ .+...++.|.+.|+ +....+...++.=.-.+.--..++...+ .
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~k----g~~~~-~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL----~ 94 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSL----DIHED-YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNL----S 94 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGG----TCCHH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHH----H
T ss_pred HHHHhccccccHHHHHHHHHHc----CCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHH----H
Q ss_pred hcCCChhhHHHHH-----------------HhhhhhhhcChhHHHHh-HHHHHHhCCcHHHHHHHHHh
Q 010056 352 AIDSSSKDFGSIV-----------------EKMPQVVNASNSAVTRH-VDFLKSCGFFLQQVRQIVVE 401 (519)
Q Consensus 352 ~lG~s~~~~~~~v-----------------~k~P~iL~~s~~~l~~k-v~fL~~lG~s~e~I~~mv~r 401 (519)
.=|++.+.+..++ ++++..-..+..+.+.| +.||..-||+.+.|..++..
T Consensus 95 ~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 95 KKGIDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp TTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
No 59
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=72 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=29.5
Q ss_pred HhHHHHHHhCCcHHHHHHHHHhcCchhccCHHHHHHHHHHHHHHhC
Q 010056 380 RHVDFLKSCGFFLQQVRQIVVECPQVLALNLDIMKLSFDYFQREMQ 425 (519)
Q Consensus 380 ~kv~fL~~lG~s~e~I~~mv~r~P~lL~~S~e~Lk~k~~fL~~~mg 425 (519)
.+++-|.+|||+.+.+.+++..+-. ..+..-++||...+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 4577889999999999888776532 135566889988664
Done!