BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010057
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390
OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2
Length = 577
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 299/518 (57%), Positives = 388/518 (74%), Gaps = 3/518 (0%)
Query: 2 RDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRG 61
RD +SN+Y ILKYS WDSAQ+ L +L ++WDS+ +N+VLK HPPM+KAWLFFNW ++ +G
Sbjct: 58 RDIVSNIYNILKYSNWDSAQEQLPHLGVRWDSHIINRVLKAHPPMQKAWLFFNWAAQIKG 117
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F HD FTYTTMLDIFGEA RI SM VF LM+EKG+ ID VTYTS++HW+S++GDVDGA+
Sbjct: 118 FKHDHFTYTTMLDIFGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAM 177
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
+WEEM+ C PT+VSYTAYMK+LF + RV+EAT+VYKEM++ + PNC+TYTVLMEYL
Sbjct: 178 RLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYL 237
Query: 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241
V GK EEAL+IF KMQE GVQPDKAACNILI K K GET + +L YMKEN + LRY
Sbjct: 238 VATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVVLRY 297
Query: 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL--I 299
P+F EAL+T K A E+D LL +V+ S E + +D E T ++ + D V+ +
Sbjct: 298 PIFVEALETLKAAGESDDLLREVNSHISVESLCSSDIDETPTAEVNDTKNSDDSRVISSV 357
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
LL K+NLVA+D LL+ + D++I+LDS V+S IIE NCD R +GA LAF+YS++M ++L+
Sbjct: 358 LLMKQNLVAVDILLNQMRDRNIKLDSFVVSAIIETNCDRCRTEGASLAFDYSLEMGIHLK 417
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
++AYLALIG ++ N PKV E+V+EM KA HSLG Y GA+LIHRLG RRP AA +F
Sbjct: 418 KSAYLALIGNFLRSNELPKVIEVVKEMVKAQHSLGCYQGAMLIHRLGFGRRPRLAADVFD 477
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
LLP+DQK A YTAL+ VY SAGS +KA+KI + M + I PSLGT++VLL+GLEK
Sbjct: 478 LLPDDQKGVAAYTALMDVYISAGSPEKAMKILREMREREIMPSLGTYDVLLSGLEKTSDF 537
Query: 480 S-DAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516
+ + RKEKKS+ A A ++ V +E+KICDLL+ +
Sbjct: 538 QKEVALLRKEKKSLVASARFRENVHVEDKICDLLFATN 575
>sp|Q9ZU31|PP138_ARATH Pentatricopeptide repeat-containing protein At2g01360
OS=Arabidopsis thaliana GN=At2g01360 PE=2 SV=1
Length = 182
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 344 ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403
A LA ++S++M ++LE++AYLAL G ++ N KV ++V+EM K+ HSLGVY GA+LIH
Sbjct: 15 ASLALDWSLEMGIHLEKSAYLALAGNFLRSNELSKVIDVVKEMVKSQHSLGVYHGAMLIH 74
Query: 404 RLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463
LG RRP AA+ LLP+DQK + YTAL+ VY SAGS +KA+KI M + I PSL
Sbjct: 75 MLGFGRRPSLAAEALDLLPDDQKGLSAYTALMDVYISAGSPEKAMKILGEMREREIMPSL 134
Query: 464 GTFNVLLAGLEKLGRVS-DAEIYRKEKKSIQADALSKDAVPMEEKIC 509
GT++VLL+GLEK + RKE+KS+ A ++ V +E+KIC
Sbjct: 135 GTYDVLLSGLEKTSDFQRETSSLRKEQKSLVASTRFREIVHVEDKIC 181
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 94 EKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR-- 151
E GI+++ Y ++ + ++ +++ +EM + + + +L R
Sbjct: 24 EMGIHLEKSAYLALAGNFLRSNELSKVIDVVKEMVKSQHSLGVYHGAMLIHMLGFGRRPS 83
Query: 152 -VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
EA D+ + Q+GL YT LM+ + AG E+A++I +M+E + P +
Sbjct: 84 LAAEALDLLPD-DQKGLS----AYTALMDVYISAGSPEKAMKILGEMREREIMPSLGTYD 138
Query: 211 ILIEKCCKAGETRTIILILRYMKENRLALRYPVFKE 246
+L+ K + + LR KE + + F+E
Sbjct: 139 VLLSGLEKTSDFQRETSSLR--KEQKSLVASTRFRE 172
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 215/473 (45%), Gaps = 24/473 (5%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSR--SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
YT N+++ + + +VS+ G + D FTYT+++ + + K + S VF
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M KG + V YT ++H L A +D A++++ +MK EC+PT+ +YT +K L ++R
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA ++ KEM + G+ PN +TYTVL++ L K+E+A E+ +M E G+ P+ N
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398
Query: 212 LIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS---LLWQVHPQF 268
LI CK G + ++ M+ +L+ + E ++ + ++ + + L + +
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKV 458
Query: 269 SPEFISDNDAVE-------FVTTDIEGPLSIDQGLV--------LI--LLKKKNLVAIDS 311
P+ ++ N ++ F + L D+GLV +I L K K +
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371
L + K + + + + +I+ C + D A L E + + + ALI L
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARRPVPAAKIFSLLPEDQKCTA- 429
+ + E+M K G V +LIHR L ++ +L K A
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
TYT I Y G A + M G+ P L T++ L+ G LG+ + A
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA 691
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 97/492 (19%), Positives = 188/492 (38%), Gaps = 65/492 (13%)
Query: 49 AWLFFNWVSRSRGFNHDRFTYTTMLDIF-----------------GEAKRISSMKYVFEL 91
A F +W+S++ + H ++Y ++L + + YV +L
Sbjct: 106 ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDL 165
Query: 92 MQEKGINIDAV----------TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTA 141
++ +N D Y ++++ L+ G VD ++ EM + P I +Y
Sbjct: 166 CRK--MNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNK 223
Query: 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201
+ V+EA ++++ GL P+ +TYT L+ + + A ++F++M G
Sbjct: 224 MVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKG 283
Query: 202 VQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFK--VADENDS 259
+ ++ A LI C A + + MK++ +P + K E S
Sbjct: 284 CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDEC---FPTVRTYTVLIKSLCGSERKS 340
Query: 260 LLWQVHPQFSPEFISDNDAVEFVTTD---IEGPLSIDQGLVLILLKK---KNLVAIDSLL 313
+ + I N V D + + L+ +L+K N++ ++L+
Sbjct: 341 EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 314 SGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK-------------MDLNLER 360
+G + + D+ + ++E R+ + +K ++ LER
Sbjct: 401 NGYCKRGMIEDAVDVVELME----SRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLER 456
Query: 361 ------TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414
Y +LI + F ++ M G + +I L ++R A
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA 516
Query: 415 AKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
+F L + YTALI Y AG D+A + + M K P+ TFN L+ G
Sbjct: 517 CDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHG 576
Query: 473 LEKLGRVSDAEI 484
L G++ +A +
Sbjct: 577 LCADGKLKEATL 588
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 1/231 (0%)
Query: 5 ISNVYKILKYSTWD-SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ NV +L+ W +A++ L+NL ++ D+Y NQVLK A FF W+ R GF
Sbjct: 302 VENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFK 361
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
HD TYTTM+ G AK+ ++ + + M G + VTY ++H A ++ A+N+
Sbjct: 362 HDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNV 421
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ +M+ C P V+Y + I + A D+Y+ M GL P+ +TY+V++ L +
Sbjct: 422 FNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGK 481
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
AG A ++F +M + G P+ NI+++ KA + + + R M+
Sbjct: 482 AGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQN 532
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+ +A FN + + G DR TY T++DI +A + +++ MQ G++ D TY+
Sbjct: 415 LNEAMNVFNQMQEA-GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYS 473
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
+++ L AG + A ++ EM + C P +V+Y M + + A +Y++M
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
G P+ TY+++ME L G EEA +F++MQ+ PD+ +L++ KAG
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593
Query: 226 ILILRYMKENRLALRYPVFKEALQTF 251
+ M L P L TF
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTF 619
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G + TY M+D+ +A+ + ++ MQ G D VTY+ VM L + G ++
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEE 557
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A ++ EM+ K P Y + + V++A Y+ M+ GL PN T L+
Sbjct: 558 AEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLS 617
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223
+R K EA E+ M G++P +L+ CC G ++
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLS-CCTDGRSK 660
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD 355
+V L + K AI+ LL ++ Q ++ + +I + A+ F +
Sbjct: 370 MVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAG 429
Query: 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415
+R Y LI I K ++ + M G S + +++I+ LG A A
Sbjct: 430 CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAH 489
Query: 416 KIFSLLPEDQKCTA---TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
K+F + DQ CT TY ++ ++ A + ALK+Y+ M G P T+++++
Sbjct: 490 KLFCEM-VDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548
Query: 473 LEKLGRVSDAE 483
L G + +AE
Sbjct: 549 LGHCGYLEEAE 559
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 343 GALLAFEYSVKMDLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL 400
G L F Y +K + Y ++G L + F + ++++EM + G
Sbjct: 345 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 404
Query: 401 LIHRLGSARRPVPAAKIFSLLPEDQKCTA---TYTALIGVYFSAGSADKALKIYKTMCRK 457
LIH G A A +F+ + ++ C TY LI ++ AG D A+ +Y+ M
Sbjct: 405 LIHSYGRANYLNEAMNVFNQM-QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG 463
Query: 458 GIHPSLGTFNVLLAGLEKLGRVSDAE 483
G+ P T++V++ L K G + A
Sbjct: 464 GLSPDTFTYSVIINCLGKAGHLPAAH 489
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 64/352 (18%), Positives = 129/352 (36%), Gaps = 57/352 (16%)
Query: 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFS 195
I +Y A + +ND Y Q G + +TYT ++ L RA ++ ++
Sbjct: 329 IDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLD 388
Query: 196 KMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVAD 255
+M G QP+ N LI Y + N L VF + + D
Sbjct: 389 EMVRDGCQPNTVTYNRLIHS---------------YGRANYLNEAMNVFNQMQEAGCKPD 433
Query: 256 E-NDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID----QGLVLILLKKKNLVAID 310
L +H + F+ + A++ G LS D ++ L K +L A
Sbjct: 434 RVTYCTLIDIHAKAG--FL--DIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAH 489
Query: 311 SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL 370
L ++D+ + + +++++ R AL + ++ Y ++ +L
Sbjct: 490 KLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVL 549
Query: 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTAT 430
+ + EM + + +P ++ LL
Sbjct: 550 GHCGYLEEAEAVFTEMQQ--------------------KNWIPDEPVYGLL--------- 580
Query: 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+ ++ AG+ +KA + Y+ M G+ P++ T N LL+ ++ ++++A
Sbjct: 581 ----VDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEA 628
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 1/231 (0%)
Query: 5 ISNVYKILKYSTW-DSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ NV IL+ W +A++ L N + D+Y NQVLK A FF W+ R GF
Sbjct: 297 VENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFK 356
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
HD TYTTM+ G AK+ + + + M G + VTY ++H A + A+N+
Sbjct: 357 HDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNV 416
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ +M+ C P V+Y + I + A D+Y+ M + GL P+ +TY+V++ L +
Sbjct: 417 FNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGK 476
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
AG A +F +M G P+ NI+I KA T + + R M+
Sbjct: 477 AGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQN 527
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 1/206 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+++A FN + + G DR TY T++DI +A + +++ MQE G++ D TY+
Sbjct: 410 LKEAMNVFNQMQEA-GCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYS 468
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
+++ L AG + A ++ EM + C P +V++ + + + A +Y++M
Sbjct: 469 VIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 528
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
G P+ TY+++ME L G EEA +F++MQ PD+ +L++ KAG
Sbjct: 529 GFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKA 588
Query: 226 ILILRYMKENRLALRYPVFKEALQTF 251
+ M + L P L TF
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTF 614
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
+G + T+ M+ + +A+ + ++ MQ G D VTY+ VM L + G ++
Sbjct: 492 GQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLE 551
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A ++ EM+ K P Y + + V +A Y+ M+Q GL PN T L+
Sbjct: 552 EAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLL 611
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219
+R + EA + M G+ P +L+ C A
Sbjct: 612 STFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDA 652
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 346 LAFEYSVKMDLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403
L F Y +K + Y ++G L + F ++ ++++EM + G LIH
Sbjct: 343 LGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIH 402
Query: 404 RLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461
G A A +F+ + E + TY LI ++ AG D A+ +Y+ M G+ P
Sbjct: 403 SYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSP 462
Query: 462 SLGTFNVLLAGLEKLGRVSDAE 483
T++V++ L K G + A
Sbjct: 463 DTFTYSVIINCLGKAGHLPAAH 484
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD 355
+V L + K I+ LL ++ + ++ + +I A+ F +
Sbjct: 365 MVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAG 424
Query: 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415
+R Y LI I K ++ + M +AG S + +++I+ LG A A
Sbjct: 425 CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAH 484
Query: 416 KIFSLLPEDQKCTA---TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
++F + Q CT T+ +I ++ A + + ALK+Y+ M G P T+++++
Sbjct: 485 RLFCEM-VGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEV 543
Query: 473 LEKLGRVSDAE 483
L G + +AE
Sbjct: 544 LGHCGFLEEAE 554
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 118/322 (36%), Gaps = 53/322 (16%)
Query: 164 QRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223
Q G + +TYT ++ L RA ++ E ++ +M G +P+ N LI
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHS-------- 403
Query: 224 TIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVT 283
Y + N L KEA+ F E + D V + T
Sbjct: 404 -------YGRANYL-------KEAMNVFNQMQEAGC---------------EPDRVTYCT 434
Query: 284 TDIEGPLSIDQGLVLILLKKKNL-VAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRD 342
L+ I K L +A+D + + + + D+ S II
Sbjct: 435 ------------LIDIHAKAGFLDIAMD-MYQRMQEAGLSPDTFTYSVIINCLGKAGHLP 481
Query: 343 GALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402
A F V + +I + K + ++ +M AG ++++
Sbjct: 482 AAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVM 541
Query: 403 HRLGSARRPVPAAKIFSLLPEDQKCT--ATYTALIGVYFSAGSADKALKIYKTMCRKGIH 460
LG A +F+ + Y L+ ++ AG+ DKA + Y+ M + G+
Sbjct: 542 EVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLR 601
Query: 461 PSLGTFNVLLAGLEKLGRVSDA 482
P++ T N LL+ ++ R+S+A
Sbjct: 602 PNVPTCNSLLSTFLRVHRMSEA 623
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 199/459 (43%), Gaps = 33/459 (7%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G + D + +TT ++ F + ++ +F M+E G+ + VT+ +V+ L G D
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A E+M + PT+++Y+ +K L R+ +A V KEM ++G PPN Y L++
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+ AG +A+EI M G+ + N LI+ CK G+ +L+ M L++
Sbjct: 387 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM----LSI 442
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN--DAVEFVTTDIEGPLSIDQG-- 295
+ V + + + + L++ +F E + N +TT I G +
Sbjct: 443 GFNVNQGSFTSV-ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 501
Query: 296 ---LVLILLKKKNLV---AIDSLLSG----------------IMDKSIQLDSAVISTIIE 333
L L K +V ++LL G I+ + +D +T+I
Sbjct: 502 ALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS 561
Query: 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393
C ++ D A + + VK L + Y LI L +N + + ++ + G
Sbjct: 562 GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLP 621
Query: 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIY 451
VY +++I A R + F + Q T Y LI Y +G AL++
Sbjct: 622 DVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELR 681
Query: 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490
+ M KGI P+ T+ L+ G+ + RV +A++ +E +
Sbjct: 682 EDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 14/243 (5%)
Query: 29 IKWDSYTVNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85
+K D+YT + + L +E+A F++ R+ G D +TY+ M+D +A+R
Sbjct: 584 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN-GMLPDVYTYSVMIDGCCKAERTEEG 642
Query: 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145
+ F+ M K + + V Y ++ +G + A+ + E+MK K P +YT+ +K
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 702
Query: 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD 205
+ + RV+EA +++EM GL PN + YT L++ + G+ + + +M V P+
Sbjct: 703 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 762
Query: 206 KAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKE----------ALQTFKVAD 255
K ++I + G +L M+E + +KE L+ FK +D
Sbjct: 763 KITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSD 822
Query: 256 END 258
E +
Sbjct: 823 EEN 825
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/384 (21%), Positives = 166/384 (43%), Gaps = 27/384 (7%)
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A++++ + K +P+ + + L + ++ + + +++ +G+ P+ Y +T +
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAIN 281
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA- 238
+ GK EEA+++FSKM+EAGV P+ N +I+ G + M E +
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341
Query: 239 --LRYPVFKEALQTFK-VADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295
+ Y + + L K + D L F P I N+ ++ I+ G
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSF---------IEAG 392
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD 355
+ ++ K+L ++ K + L S+ +T+I+ C + + D A + + +
Sbjct: 393 SLNKAIEIKDL---------MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIG 443
Query: 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415
N+ + ++ ++I +L F V EM S G L LI L + A
Sbjct: 444 FNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAL 503
Query: 416 KI-FSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473
++ F L + T T AL+ AG D+A +I K + +G ++N L++G
Sbjct: 504 ELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGC 563
Query: 474 EKLGRVSDAEIYRKE--KKSIQAD 495
++ +A ++ E K+ ++ D
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPD 587
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 3/182 (1%)
Query: 40 LKTHPPMEKAW-LFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGIN 98
L H KA L+F ++++ GF D T +L EA ++ + + + +G
Sbjct: 493 LCKHGKHSKALELWFQFLNK--GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCV 550
Query: 99 IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDV 158
+D V+Y +++ +D A +EM + P +Y+ + LF ++V+EA
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 610
Query: 159 YKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218
+ + + G+ P+ YTY+V+++ +A + EE E F +M VQP+ N LI C+
Sbjct: 611 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 670
Query: 219 AG 220
+G
Sbjct: 671 SG 672
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 171/442 (38%), Gaps = 48/442 (10%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S+G + TY T++ + + + + + + + M G N++ ++TSV+ L + D
Sbjct: 406 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 465
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A+ EM L+ P T + L + + +A +++ + + +G + T L+
Sbjct: 466 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 525
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238
L AGK +EA I ++ G D+ + N LI CC + + L M + L
Sbjct: 526 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 585
Query: 239 ---LRYPVF----------KEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTD 285
Y + +EA+Q + N L P + + + T+
Sbjct: 586 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGML-----PDVYTYSVMIDGCCKAERTE 640
Query: 286 IEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGAL 345
EG D+ +M K++Q ++ V + +I C R AL
Sbjct: 641 -EGQEFFDE---------------------MMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 678
Query: 346 LAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRL 405
E ++ Y +LI + ++ + + EEM G V+ LI
Sbjct: 679 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 738
Query: 406 GSARRPVPAAKIFSLLPEDQKCTA-----TYTALIGVYFSAGSADKALKIYKTMCRKGIH 460
G + V K+ LL E TYT +IG Y G+ +A ++ M KGI
Sbjct: 739 GKLGQMV---KVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 795
Query: 461 PSLGTFNVLLAGLEKLGRVSDA 482
P T+ + G K G V +A
Sbjct: 796 PDSITYKEFIYGYLKQGGVLEA 817
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/469 (20%), Positives = 179/469 (38%), Gaps = 35/469 (7%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG TY+ ++ AKRI +V + M +KG + + Y +++ AG ++
Sbjct: 337 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNK 396
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ I + M K T +Y +K N + A + KEM+ G N ++T ++
Sbjct: 397 AIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVIC 456
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE-TRTIILILRYMKENRLA 238
L ++ AL +M + P LI CK G+ ++ + L +++ +
Sbjct: 457 LLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG-FV 515
Query: 239 LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL 298
+ L A + D + D + + + G +D+ +
Sbjct: 516 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 575
Query: 299 ILLKKKNLVAIDS-----LLSGI-----MDKSIQL-----------DSAVISTIIEVNCD 337
+ K + D+ L+ G+ ++++IQ D S +I+ C
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635
Query: 338 HRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS----- 392
R + F+ + ++ Y LI + E+ E+M G S
Sbjct: 636 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 695
Query: 393 -LGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIY 451
+ G +I R+ A+ ++ L P YTALI Y G K +
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN----VFHYTALIDGYGKLGQMVKVECLL 751
Query: 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE--KKSIQADALS 498
+ M K +HP+ T+ V++ G + G V++A E +K I D+++
Sbjct: 752 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSIT 800
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 1/187 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+++A++F + + + RG D +TY+ ++ ++ ++ + G+ D TY+
Sbjct: 569 LDEAFMFLDEMVK-RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYS 627
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ A + ++EM K P V Y ++ + R+ A ++ ++M +
Sbjct: 628 VMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 687
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
G+ PN TYT L++ + + EEA +F +M+ G++P+ LI+ K G+ +
Sbjct: 688 GISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 747
Query: 226 ILILRYM 232
+LR M
Sbjct: 748 ECLLREM 754
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/457 (22%), Positives = 193/457 (42%), Gaps = 26/457 (5%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSRSR--GFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
+ N++L M+K L + + + G +H+ +TY +++ F +IS +
Sbjct: 86 FEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGK 145
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M + G VT +S+++ + + AV + ++M P +++T + LFL+++
Sbjct: 146 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 205
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA + M+QRG PN TY V++ L + G + A + +KM+ A ++ + +
Sbjct: 206 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYST 265
Query: 212 LIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQ-VHPQ 267
+I+ CK + + M+ + + Y L ++ + LL + +
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
+P ++ N L+ +K+ LV + L ++ +SI D
Sbjct: 326 INPNVVTFN------------------ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
S++I C H R D A FE + D Y LI K + E+ EM+
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSAD 445
+ G LIH AR A +F + D TY L+ G +
Sbjct: 428 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 487
Query: 446 KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
KA+ +++ + R + P++ T+N+++ G+ K G+V D
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 524
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL---PIKWDSYTVNQVL----KTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ I + T N ++ K +E L+ + RS +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS--ID 362
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
D FTY+++++ F R+ K++FELM K + VTY ++++ A +D V +
Sbjct: 363 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL 422
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+YT + F A V+K+M+ G+ PN TY L++ L +
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 482
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK E+A+ +F +Q + ++P NI+IE CKAG+
Sbjct: 483 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 93/168 (55%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY T+++ F +AKRI +F M ++G+ + VTYT+++H A D D A ++++M
Sbjct: 402 TYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+P I++Y + L N ++++A V++ + + + P YTY +++E + +AGK
Sbjct: 462 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 521
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
E+ ++F + GV+PD N +I C+ G + R M+E+
Sbjct: 522 EDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 79/149 (53%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG + TYTT++ F +A+ + + VF+ M G++ + +TY +++ L G ++
Sbjct: 429 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 488
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ ++E ++ + PTI +Y ++ + +V++ D++ + +G+ P+ Y ++
Sbjct: 489 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAA 208
R G EEA +F KM+E G PD
Sbjct: 549 GFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/427 (18%), Positives = 155/427 (36%), Gaps = 60/427 (14%)
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
+D A+ ++ M P+I + + + + + ++M + G+ N YTY +
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125
Query: 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236
L+ R + AL + KM + G +P + L+ C + ++ M E
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 237 L---ALRYPVFKEALQTFKVADENDSLL-WQVHPQFSPEFISDNDAVEFV---------- 282
+ + L A E +L+ V P ++ V +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 245
Query: 283 -------TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVN 335
IE + I ++ L K ++ +L + + +K ++ + S++I
Sbjct: 246 NLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 305
Query: 336 CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV 395
C++ R A ++ +N + ALI +K + ++ +EM K +
Sbjct: 306 CNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 365
Query: 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---------------------------- 427
+ + LI+ R A +F L+ + C
Sbjct: 366 FTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424
Query: 428 ----------TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
T TYT LI +F A D A ++K M G+HP++ T+N LL GL K G
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484
Query: 478 RVSDAEI 484
++ A +
Sbjct: 485 KLEKAMV 491
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/365 (19%), Positives = 155/365 (42%), Gaps = 32/365 (8%)
Query: 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
++ +A ++ M++ P+ + + L+ + + K++ + + KMQ G+ + N
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 211 ILIEKCCKAGE-TRTIILILRYMK---ENRLALRYPVFKEALQTFKVADENDSLLWQVHP 266
ILI C+ + + + L+ + MK E + + +++D + V
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 267 QFSPEFIS-------------DNDAVEFVTTDIE---GPLSIDQGLVLI-LLKKKNLVAI 309
+ P+ I+ ++AV V ++ P + G+V+ L K+ ++
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGI 369
+LL+ + I+ + + ST+I+ C +R D AL F + Y +LI
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF------SLLPE 423
L + + ++ +M + + V LI + V A K++ S+ P+
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364
Query: 424 DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA- 482
TY++LI + D+A +++ M K P++ T+N L+ G K R+ +
Sbjct: 365 ----IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420
Query: 483 EIYRK 487
E++R+
Sbjct: 421 ELFRE 425
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/434 (23%), Positives = 181/434 (41%), Gaps = 27/434 (6%)
Query: 67 FTYTTMLDIFGEAKRISSMKYVFELMQEK---GINIDAVTYTSVMHWLSNAGDVDGAVNI 123
F+Y +L + R + +M + G D V+YT+V++ GD D A +
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + P +V+Y + + L + +A +V M++ G+ P+C TY ++
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243
+G+ +EA+ KM+ GV+PD ++L++ CK G I M + L
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 244 FKEALQTFKVAD---ENDSLL-WQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
+ LQ + E LL V P D+ + +DQ ++
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHP----DHYVFSILICAYAKQGKVDQAML-- 392
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+ S + + + ++ +I + C R + A+L FE + L+
Sbjct: 393 ------------VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y +LI L N + + E++ EM G L +I R + + K+F
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500
Query: 420 LLPE--DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
L+ + TY LI Y AG D+A+K+ M G+ P+ T++ L+ G K+
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 478 RVSDAEIYRKEKKS 491
R+ DA + KE +S
Sbjct: 561 RMEDALVLFKEMES 574
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/447 (21%), Positives = 185/447 (41%), Gaps = 23/447 (5%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG D TY +++ +A+ + V M + G+ D +TY S++H ++G
Sbjct: 225 RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 284
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ ++M+ P +V+Y+ M L N R EA ++ M +RGL P TY L++
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
G E + M G+ PD +ILI K G+ +L+ M++ L
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNP 404
Query: 240 RYPVFKEALQTF-KVADENDSLLW---QVHPQFSPEFISDNDAVEFVTTDIEGPLS---- 291
+ + K D++L+ + SP I N + + T + +
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464
Query: 292 ---IDQGLVLILL----------KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH 338
+D+G+ L + K+ ++ + L ++ ++ + +T+I C
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524
Query: 339 RRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLG 398
+ D A+ V + L Y LI K++ + +EM +G S +
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 399 ALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCR 456
+++ L RR A +++ + E Q +TY ++ D AL++++ +C
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCL 644
Query: 457 KGIHPSLGTFNVLLAGLEKLGRVSDAE 483
+ TFN+++ L K+GR +A+
Sbjct: 645 MDLKLEARTFNIMIDALLKVGRNDEAK 671
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 1/194 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
ME A + F + S G + D TY +L + +R ++ K ++ + E G I+ TY
Sbjct: 562 MEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++H L D A+ +++ + L + ++ + L R EA D++
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
GL PN +TY ++ E ++ G EE ++F M++ G D N ++ + + GE
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
Query: 226 ILILRYMKENRLAL 239
L + E +L
Sbjct: 741 GTYLSMIDEKHFSL 754
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/384 (21%), Positives = 149/384 (38%), Gaps = 28/384 (7%)
Query: 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATD-V 158
D TY ++ AG +D + K +++T +K L + R +A D V
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 159 YKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE---AGVQPDKAACNILIEK 215
+ M + G PN ++Y +L++ L + +EALE+ M + G PD + +I
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 216 CCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLL-WQVHPQFSPE 271
K G++ M + + + Y AL + D+ +L V P+
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265
Query: 272 FISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTI 331
++ N + G S Q I KK + ++ D S +
Sbjct: 266 CMTYNSI-------LHGYCSSGQPKEAIGFLKK-----------MRSDGVEPDVVTYSLL 307
Query: 332 IEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391
++ C + R A F+ K L E T Y L+ ++ +++ M + G
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367
Query: 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALK 449
Y+ ++LI + A +FS + + TY A+IG+ +G + A+
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 450 IYKTMCRKGIHPSLGTFNVLLAGL 473
++ M +G+ P +N L+ GL
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGL 451
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/465 (22%), Positives = 193/465 (41%), Gaps = 58/465 (12%)
Query: 34 YTVNQVLKTHPPMEKAWLFFNWVSRSR--GFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
+ N++L M+K L + + + G +H+ +TY +++ F +IS +
Sbjct: 11 FEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGK 70
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
M + G VT +S+++ + + AV + ++M P +++T + LFL+++
Sbjct: 71 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 130
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
EA + M+QRG PN TY V++ L + G + A + +KM+ A ++ D N
Sbjct: 131 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 190
Query: 212 LIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTF-KVADENDSLLWQVHPQ 267
+I+ CK + + + M+ + + Y L ++ + +D + L + +
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
+P ++ N L+ +K+ V + L ++ +SI D
Sbjct: 251 INPNLVTFN------------------ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFT 292
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
+++I C H R D A FE+ V D + Y LI K E+ EM+
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKA 447
G L D T TYT LI F G D A
Sbjct: 353 HRG------------------------------LVGD---TVTYTTLIQGLFHDGDCDNA 379
Query: 448 LKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA-EIYRKEKKS 491
K++K M G+ P + T+++LL GL G++ A E++ +KS
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 424
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL---PIKWDSYTVNQVL----KTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ I + T N ++ K +E L + + RS +
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS--ID 287
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
D FTY ++++ F R+ K +FE M K D TY +++ + V+ +
Sbjct: 288 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+YT ++ LF + A V+K+M+ G+PP+ TY++L++ L
Sbjct: 348 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 407
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK E+ALE+F MQ++ ++ D +IE CKAG+
Sbjct: 408 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 445
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 99/190 (52%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+ N + T+ ++D F + + + + + M ++ I+ D TY S+++ +D
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A ++E M K+C+P + +Y +K + RV++ T++++EM RGL + TYT L++
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
L G + A ++F +M GV PD +IL++ C G+ + + YM+++ + L
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428
Query: 240 RYPVFKEALQ 249
++ ++
Sbjct: 429 DIYIYTTMIE 438
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 39/263 (14%)
Query: 13 KYSTWDSAQDLLKNLPIKWDSYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRFTY 69
K+ + D + I D +T N ++ H ++KA F ++ F D TY
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTY 328
Query: 70 TTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKL 129
T++ F ++KR+ +F M +G+ D VTYT+++ L + GD D A ++++M
Sbjct: 329 NTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 388
Query: 130 KECYPTIVSYTAYMKILFLNDRVKEATDV---------------YKEMIQ---------- 164
P I++Y+ + L N ++++A +V Y MI+
Sbjct: 389 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Query: 165 ----------RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
+G+ PN TY ++ L +EA + KM+E G PD N LI
Sbjct: 449 GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIR 508
Query: 215 KCCKAGETRTIILILRYMKENRL 237
+ G+ ++R M+ R
Sbjct: 509 AHLRDGDKAASAELIREMRSCRF 531
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G D TY+ +LD ++ VF+ MQ+ I +D YT+++ + AG VD
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+++ + LK P +V+Y + L ++EA + K+M + G P+ TY L+
Sbjct: 448 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 507
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+R G + E+ +M+ C G+ TI L+ + + RL
Sbjct: 508 RAHLRDGDKAASAELIREMRS----------------CRFVGDASTIGLVANMLHDGRL 550
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 98/455 (21%), Positives = 195/455 (42%), Gaps = 24/455 (5%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G D FTYTT+L F A ++ S +FE M+ G + T+ + + N G
Sbjct: 378 KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTE 437
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+ I++E+ + P IV++ + + N E + V+KEM + G P T+ L+
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
R G +E+A+ ++ +M +AGV PD + N ++ + G +L M++ R
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKP 557
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
+ L + E + +H A E + IE + + LVL+
Sbjct: 558 NELTYCSLLHAYANGKE----IGLMHSL----------AEEVYSGVIEPRAVLLKTLVLV 603
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
K L + S + ++ D +++++ + + A +Y +
Sbjct: 604 CSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPS 663
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y +L+ + + F K EI+ E+ G + +I+ R A++IFS
Sbjct: 664 MATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723
Query: 420 ------LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473
++P+ TY IG Y + ++A+ + + M + G P+ T+N ++ G
Sbjct: 724 EMRNSGIVPD----VITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Query: 474 EKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKI 508
KL R +A+++ ++ +++ A + + + E+I
Sbjct: 780 CKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERI 814
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/484 (22%), Positives = 200/484 (41%), Gaps = 69/484 (14%)
Query: 40 LKTHPPMEKAWLFFNWVSRSRGFNH--DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI 97
L H + A F+W + + + D ++ + G+ R+SS +F +QE G
Sbjct: 145 LGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF 204
Query: 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF-LNDRVKEAT 156
++D +YTS++ +N+G AVN++++M+ C PT+++Y + + + + T
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKIT 264
Query: 157 DVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKC 216
+ ++M G+ P+ YTY L+ R ++EA ++F +M+ AG DK N L++
Sbjct: 265 SLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV- 323
Query: 217 CKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276
Y K +R KEA+ KV +E V FSP ++ N
Sbjct: 324 --------------YGKSHRP-------KEAM---KVLNE------MVLNGFSPSIVTYN 353
Query: 277 DAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNC 336
+ D G++ ++ KN +A +K + D +T++
Sbjct: 354 SLISAYARD---------GMLDEAMELKNQMA---------EKGTKPDVFTYTTLLSGFE 395
Query: 337 DHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVY 396
+ + A+ FE + A I + F ++ +I +E+ G S +
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIV 455
Query: 397 LGALLIHRLGSARRPVPAAKIF------SLLPEDQKCTATYTALIGVYFSAGSADKALKI 450
L+ G + +F +PE + T+ LI Y GS ++A+ +
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE----TFNTLISAYSRCGSFEQAMTV 511
Query: 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICD 510
Y+ M G+ P L T+N +LA L + G +E + A+ P E C
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE-------KVLAEMEDGRCKPNELTYCS 564
Query: 511 LLYG 514
LL+
Sbjct: 565 LLHA 568
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+ RGF+ D T +M+ I+G + ++ V + M+E+G TY S+M+ S + D
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
+ I E+ K P I+SY + N R+++A+ ++ EM G+ P+ TY
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218
+ +EEA+ + M + G +P++ N +++ CK
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 61/133 (45%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+ RGF TY +++ + + + + + KGI D ++Y +V++ +
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
A I+ EM+ P +++Y ++ + +EA V + MI+ G PN TY +
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775
Query: 178 MEYLVRAGKYEEA 190
++ + + +EA
Sbjct: 776 VDGYCKLNRKDEA 788
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/494 (22%), Positives = 204/494 (41%), Gaps = 37/494 (7%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
+R+ +S++ K+ D D++K+ P N++L M K L + + +
Sbjct: 54 LRNRLSDIIKV--DDAVDLFGDMVKSRPFP-SIVEFNKLLSAVAKMNKFELVISLGEQMQ 110
Query: 61 --GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
G +HD +TY+ ++ F ++S V M + G D VT +S+++ ++ +
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
AV + ++M P ++T + LFL+++ EA + +M+QRG P+ TY ++
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238
L + G + AL + KM++ ++ D N +I+ CK
Sbjct: 231 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK-------------------- 270
Query: 239 LRYPVFKEALQTFKVADEN----DSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID- 293
Y +AL F D D + + +DA ++ IE ++ +
Sbjct: 271 --YKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328
Query: 294 ---QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEY 350
L+ +K+ LV + L ++ +SI D S++I C H R D A FE
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388
Query: 351 SVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARR 410
+ D Y LI K + E+ EM++ G LIH AR
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448
Query: 411 PVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468
A +F + TY L+ G KA+ +++ + R + P + T+N+
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508
Query: 469 LLAGLEKLGRVSDA 482
++ G+ K G+V D
Sbjct: 509 MIEGMCKAGKVEDG 522
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 94/168 (55%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY+T++ F +AKR+ +F M ++G+ + VTYT+++H A D D A ++++M
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+P I++Y + L N ++ +A V++ + + + P+ YTY +++E + +AGK
Sbjct: 460 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKV 519
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
E+ E+F + GV P+ A N +I C+ G +L+ MKE+
Sbjct: 520 EDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 26/288 (9%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
R N + T++ ++D F + ++ + +++ M ++ I+ D TY+S+++ +D
Sbjct: 322 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 381
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A +++E M K+C+P +V+Y+ +K RV+E ++++EM QRGL N TYT L+
Sbjct: 382 AKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIH 441
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA- 238
+A + A +F +M GV P+ NIL++ CK G+ +++ Y++ + +
Sbjct: 442 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501
Query: 239 --LRYPVFKEAL-QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295
Y + E + + KV D W++ S + +S N V T I G
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDG-----WELFCNLSLKGVSPN--VIAYNTMISG------- 547
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDG 343
+K + DSLL + + +S +T+I R RDG
Sbjct: 548 ----FCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA----RLRDG 587
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 170/433 (39%), Gaps = 60/433 (13%)
Query: 111 LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170
LS+ VD AV+++ +M +P+IV + + + ++ + + ++M G+ +
Sbjct: 58 LSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHD 117
Query: 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILR 230
YTY++ + R + AL + +KM + G +PD + L+ C + + ++
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177
Query: 231 YMKENRL---ALRYPVFKEALQTFKVADENDSLLWQ-VHPQFSPEFISDNDAVEFVTT-- 284
M E + L A E +L+ Q V P+ ++ V +
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237
Query: 285 ---------------DIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS 329
IE + I ++ L K K++ +L + + +K I+ D S
Sbjct: 238 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297
Query: 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389
++I C++ R A ++ +N + ALI +K + ++ +EM K
Sbjct: 298 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 357
Query: 390 GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---------------------- 427
++ + LI+ R A +F L+ + C
Sbjct: 358 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYSTLIKGFCKAKRVEE 416
Query: 428 ----------------TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471
T TYT LI +F A D A ++K M G+HP++ T+N+LL
Sbjct: 417 GMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLD 476
Query: 472 GLEKLGRVSDAEI 484
GL K G+++ A +
Sbjct: 477 GLCKNGKLAKAMV 489
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 20/211 (9%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+E+ F +S+ RG + TYTT++ F +A+ + + VF+ M G++ + +TY
Sbjct: 414 VEEGMELFREMSQ-RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 472
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ L G + A+ ++E ++ P I +Y ++ + +V++ +++ + +
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI------------ 213
G+ PN Y ++ R G EEA + KM+E G P+ N LI
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 214 -------EKCCKAGETRTIILILRYMKENRL 237
C AG+ TI L+ + + RL
Sbjct: 593 AELIKEMRSCGFAGDASTIGLVTNMLHDGRL 623
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 179/433 (41%), Gaps = 56/433 (12%)
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
H +TY +++ F +IS + M + G VT +S+++ + + AV +
Sbjct: 118 HGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVAL 177
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
++M P +++T + LFL+++ EA + M+QRG PN TY V++ L +
Sbjct: 178 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 237
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL---ALR 240
G + AL + +KM+ A ++ D N +I+ CK + + + M+ + +
Sbjct: 238 RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT 297
Query: 241 YPVFKEALQTF-KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
Y L ++ + +D + L + + +P ++ N L+
Sbjct: 298 YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN------------------ALIDA 339
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+K+ V + L ++ +SI D ++++ C H R D A FE+ V D +
Sbjct: 340 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y LI K E+ EM+ G
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRG----------------------------- 430
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
L D T TYT LI F G D A K++K M G+ P + T+++LL GL G++
Sbjct: 431 -LVGD---TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKL 486
Query: 480 SDA-EIYRKEKKS 491
A E++ +KS
Sbjct: 487 EKALEVFDYMQKS 499
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL---PIKWDSYTVNQVL----KTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ I + T N ++ K +E L+ + + RS +
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS--ID 362
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
D FTY ++++ F R+ K +FE M K D VTY +++ + V+ +
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+YT ++ LF + A V+K+M+ G+PP+ TY++L++ L
Sbjct: 423 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 482
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK E+ALE+F MQ++ ++ D +IE CKAG+
Sbjct: 483 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 109/214 (50%), Gaps = 1/214 (0%)
Query: 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122
N + T+ ++D F + + + +++ M ++ I+ D TY S+++ +D A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
++E M K+C+P +V+Y +K + RV++ T++++EM RGL + TYT L++ L
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 183 RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242
G + A ++F +M GV PD +IL++ C G+ + + YM+++ + L
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276
++ ++ A + D W + S + + N
Sbjct: 507 IYTTMIEGMCKAGKVDD-GWDLFCSLSLKGVKPN 539
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 112/217 (51%), Gaps = 5/217 (2%)
Query: 22 DLLKNLPIKWDSYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78
D++K I D +T N ++ H ++KA F ++ F D TY T++ F +
Sbjct: 355 DMIKR-SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCK 412
Query: 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS 138
+KR+ +F M +G+ D VTYT+++ L + GD D A ++++M P I++
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 472
Query: 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198
Y+ + L N ++++A +V+ M + + + Y YT ++E + +AGK ++ ++F +
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 532
Query: 199 EAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
GV+P+ N +I C + +L+ MKE+
Sbjct: 533 LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 569
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/432 (22%), Positives = 175/432 (40%), Gaps = 17/432 (3%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G+ D T+TT++ + S + + M ++G + VTY V++ L GD D A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+N+ +M+ + +V + + L V +A +++KEM +G+ PN TY+ L+
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L G++ +A ++ S M E + P+ N LI+ K G+ + M + +
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+ + F + D D + F EF+ D V T L+
Sbjct: 365 IFTYNSLVNGFCMHDRLD----KAKQMF--EFMVSKDCFPDVVT--------YNTLIKGF 410
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
K K + L + + + D+ +T+I+ D A F+ V + +
Sbjct: 411 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
Y L+ L K E+ + M K+ L +Y+ +I + A + +F
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530
Query: 421 LPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL-AGLEKLG 477
L + TY +I S +A + K M G P+ GT+N L+ A L
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 478 RVSDAEIYRKEK 489
+ + AE+ R+ +
Sbjct: 591 KAASAELIREMR 602
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/474 (19%), Positives = 189/474 (39%), Gaps = 20/474 (4%)
Query: 5 ISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSR--SRGF 62
+S + K+ K+ S + ++ L I YT N ++ + L + + G+
Sbjct: 92 LSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGY 151
Query: 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122
T +++L+ + KRIS + + M E G D +T+T+++H L AV
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
+ + M + C P +V+Y + L A ++ +M + + + +++ L
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 183 RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242
+ ++AL +F +M+ G++P+ + LI C G +L M E ++
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK 302
F + F + E + D+ + DI S+ G +
Sbjct: 332 TFNALIDAF----------VKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM---- 377
Query: 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR-RDGALLAFEYSVKMDLNLERT 361
L + ++ K D +T+I+ C +R DG L E S + L +
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR-GLVGDTV 436
Query: 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421
Y LI L ++ ++M G + ++L+ L + + A ++F +
Sbjct: 437 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 422 --PEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473
E + YT +I AG D ++ ++ KG+ P++ T+N +++GL
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G D TY+ +LD ++ VF+ MQ+ I +D YT+++ + AG VD
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+++ + LK P +V+Y + L ++EA + K+M + G PN TY L+
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 582
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+R G + E+ +M+ C G+ TI L+ + + RL
Sbjct: 583 RAHLRDGDKAASAELIREMRS----------------CRFVGDASTIGLVANMLHDGRL 625
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/411 (20%), Positives = 162/411 (39%), Gaps = 37/411 (9%)
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
+D A+ ++ M P+IV + + + + + ++M + + YTY +
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236
L+ R + AL + KM + G +P + L+ C + ++ M E
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 237 LALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIE---GPLSID 293
++ TF +H F S +AV V ++ P +
Sbjct: 186 -------YRPDTITFTTL---------IHGLFLHNKAS--EAVALVDRMVQRGCQPNLVT 227
Query: 294 QGLVLILLKKKNLVAID-SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352
G+V+ L K+ + +LL+ + I+ D + +TII+ C +R D AL F+
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 287
Query: 353 KMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPV 412
+ Y +LI L + ++++ +M + + + LI + V
Sbjct: 288 TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 347
Query: 413 PAAKIF------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466
A K++ S+ P+ TY +L+ + DKA ++++ M K P + T+
Sbjct: 348 EAEKLYDDMIKRSIDPD----IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 467 NVLLAGLEKLGRVSDA-EIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516
N L+ G K RV D E++R+ + L D V I L + GD
Sbjct: 404 NTLIKGFCKSKRVEDGTELFRE----MSHRGLVGDTVTYTTLIQGLFHDGD 450
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/424 (24%), Positives = 183/424 (43%), Gaps = 59/424 (13%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D TY M+ + +A I++ V + M ++ D VTY +++ L ++G + A+ +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
+ M ++CYP +++YT ++ + V A + EM RG P+ TY VL+ + +
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF 244
G+ +EA++ + M +G QP+ NI++ C G R+M +L
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTG---------RWMDAEKL------- 331
Query: 245 KEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304
+AD + FSP ++ N + F L +K
Sbjct: 332 --------LAD-------MLRKGFSPSVVTFNILINF-------------------LCRK 357
Query: 305 NLV--AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA 362
L+ AID +L + Q +S + ++ C ++ D A+ E V +
Sbjct: 358 GLLGRAID-ILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416
Query: 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF-SLL 421
Y ++ L K EI+ +++ G S + +I L A + A K+ +
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476
Query: 422 PEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
+D K T TY++L+G G D+A+K + R GI P+ TFN ++ GL K R +
Sbjct: 477 AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK-SRQT 535
Query: 481 DAEI 484
D I
Sbjct: 536 DRAI 539
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 96/208 (46%), Gaps = 2/208 (0%)
Query: 13 KYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSR--SRGFNHDRFTYT 70
K ++A +L + + D T N +L++ K + R R D TYT
Sbjct: 184 KAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243
Query: 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130
+++ + + + M+++G D VTY +++ + G +D A+ +M
Sbjct: 244 ILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS 303
Query: 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190
C P ++++ ++ + R +A + +M+++G P+ T+ +L+ +L R G A
Sbjct: 304 GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRA 363
Query: 191 LEIFSKMQEAGVQPDKAACNILIEKCCK 218
++I KM + G QP+ + N L+ CK
Sbjct: 364 IDILEKMPQHGCQPNSLSYNPLLHGFCK 391
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+E A N +S S+G + TY T++D +A + + + M+ K + D +TY+
Sbjct: 430 VEDAVEILNQLS-SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
S++ LS G VD A+ + E + P V++ + M L + + A D MI R
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAA 208
G PN +YT+L+E L G +EALE+ +++ G+ +A
Sbjct: 549 GCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSA 591
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 180/461 (39%), Gaps = 77/461 (16%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D TT++ F + + E+++ G D +TY ++ AG+++ A+++
Sbjct: 136 DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
+ M + P +V+Y ++ L + ++K+A +V M+QR P+ TYT+L+E R
Sbjct: 196 DRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN----RLALR 240
A+++ +M++ G PD N+L+ CK G I L M + +
Sbjct: 253 SGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+ + T + D L + FSP ++ N + F+ +G L G + +
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR--KGLL----GRAIDI 366
Query: 301 LKK-------KNLVAIDSLLSGI-----MDKSIQL-----------DSAVISTIIEVNC- 336
L+K N ++ + LL G MD++I+ D +T++ C
Sbjct: 367 LEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426
Query: 337 DHRRRDGALLAFEYSVK----------------------------------MDLNLERTA 362
D + D + + S K DL +
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTIT 486
Query: 363 YLALIGILIKLNTFPKVAEIVEEMTKAG-HSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421
Y +L+G L + + + E + G V ++++ S R A F +
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS--RQTDRAIDFLVF 544
Query: 422 PEDQKCT---ATYTALIGVYFSAGSADKALKIYKTMCRKGI 459
++ C +YT LI G A +AL++ +C KG+
Sbjct: 545 MINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/394 (18%), Positives = 150/394 (38%), Gaps = 26/394 (6%)
Query: 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
++ G+N A + ++ SN+ ++ L++ V +++ +
Sbjct: 63 VESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALED-----VESNNHLRQMVRTGE 117
Query: 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211
++E + M+ G P+ T L+ R GK +A +I ++ +G PD N+
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177
Query: 212 LIEKCCKAGETRTIILILRYMKENRLALRY-PVFKEALQTFKVADENDSLLWQVHPQFSP 270
+I CKAGE + +L M + + Y + + + K+ + L + P
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP 237
Query: 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIST 330
+ I+ +E D G+ + LL + D+ D +
Sbjct: 238 DVITYTILIEATCR--------DSGVGHAM----------KLLDEMRDRGCTPDVVTYNV 279
Query: 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
++ C R D A+ + ++ + + +++ +M + G
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 391 HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKAL 448
S V +LI+ L A I +P+ Q + +Y L+ + D+A+
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399
Query: 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+ + M +G +P + T+N +L L K G+V DA
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDA 433
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 424 DQKCT---ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
D+ CT TY L+ G D+A+K M G P++ T N++L + GR
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM 326
Query: 481 DAEIYRKEKKSIQADALSKDAVP 503
DAE + AD L K P
Sbjct: 327 DAE-------KLLADMLRKGFSP 342
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 123/496 (24%), Positives = 189/496 (38%), Gaps = 59/496 (11%)
Query: 28 PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKY 87
P S V + LK+ P + ++ +F V+ + H T ML+ ++ M Y
Sbjct: 80 PDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAY 139
Query: 88 VFELMQEKGINIDAVTYTSVMHWLS----------------------NAGDVDG------ 119
VF+LMQ++ I D TY ++ LS NA +G
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL 199
Query: 120 -------AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCY 172
A+ ++ M L+ P++ +Y++ M L + + KEM GL PN Y
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232
T+T+ + L RAGK EA EI +M + G PD +LI+ C A + + M
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319
Query: 233 KENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292
K R + L F + DS+ QF E D + VT I
Sbjct: 320 KTGRHKPDRVTYITLLDRFSDNRDLDSV-----KQFWSEMEKDGHVPDVVTFTI------ 368
Query: 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352
LV L K N L + D+ I + +T+I R D AL F
Sbjct: 369 ---LVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME 425
Query: 353 KMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPV 412
+ + Y+ I K E E+M G + + ++ L A R
Sbjct: 426 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDR 485
Query: 413 PAAKIF------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466
A +IF L+P+ + TY ++ Y G D+A+K+ M G P +
Sbjct: 486 EAKQIFYGLKDIGLVPD----SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVV 541
Query: 467 NVLLAGLEKLGRVSDA 482
N L+ L K RV +A
Sbjct: 542 NSLINTLYKADRVDEA 557
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 112/475 (23%), Positives = 187/475 (39%), Gaps = 28/475 (5%)
Query: 18 DSAQDLLK---NLPIKWDSYTVN---QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTT 71
DS LLK L +K + YT +VL + +A+ + G D TYT
Sbjct: 240 DSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD-DEGCGPDVVTYTV 298
Query: 72 MLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131
++D A+++ K VFE M+ D VTY +++ S+ D+D W EM+
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 132 CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191
P +V++T + L EA D M +G+ PN +TY L+ L+R + ++AL
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Query: 192 EIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF 251
E+F M+ GV+P + I+ K+G++ + + MK +A +L +
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478
Query: 252 KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311
A + + + D+ + ID+ +
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAI--------------K 524
Query: 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371
LLS +M+ + D V++++I R D A F +M L Y L+ L
Sbjct: 525 LLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG 584
Query: 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK-IFSLLPEDQKCTA- 429
K + E+ E M + G L L A K +F ++ D C
Sbjct: 585 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM--DMGCVPD 642
Query: 430 --TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
TY +I G +A+ + M +K ++P T LL G+ K + DA
Sbjct: 643 VFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDA 696
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 95/181 (52%), Gaps = 1/181 (0%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+S G D TY +LD +G++ +I + +++ M + +T+ V+ L AG+V
Sbjct: 812 KSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871
Query: 118 DGAVNIWEE-MKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
D A++++ + M ++ PT +Y + L + R+ EA +++ M+ G PNC Y +
Sbjct: 872 DDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNI 931
Query: 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236
L+ +AG+ + A +F +M + GV+PD ++L++ C G + + +KE+
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 237 L 237
L
Sbjct: 992 L 992
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128
Y +++ FG+A + +F+ M ++G+ D TY+ ++ L G VD ++ ++E+K
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Query: 129 LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM-IQRGLPPNCYTYTVLMEYLVRAGKY 187
P +V Y + L + R++EA ++ EM RG+ P+ YTY L+ L AG
Sbjct: 989 ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048
Query: 188 EEALEIFSKMQEAGVQPDKAACNILI 213
EEA +I++++Q AG++P+ N LI
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALI 1074
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 51 LFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW 110
L+++ +S R F+ TY ++D ++ R+ K +FE M + G + Y +++
Sbjct: 877 LYYDLMS-DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935
Query: 111 LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170
AG+ D A +++ M + P + +Y+ + L + RV E +KE+ + GL P+
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995
Query: 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILI 213
Y +++ L ++ + EEAL +F++M+ + G+ PD N LI
Sbjct: 996 VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 152/380 (40%), Gaps = 52/380 (13%)
Query: 107 VMHWLSNAGDVDGAVNIWEEM-KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ + +V GA ++E+ K P + +Y + L D ++ A DV+ ++
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
G P+ TY L++ ++GK +E E++ +M + + NI+I KAG
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV--- 871
Query: 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTD 285
++ L L Y + + FSP T
Sbjct: 872 --------DDALDLYYDLMSDR-------------------DFSP------------TAC 892
Query: 286 IEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGAL 345
GPL ID L K L L G++D + + A+ + +I D A
Sbjct: 893 TYGPL-IDG-----LSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 346 LAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRL 405
F+ VK + + Y L+ L + + +E+ ++G + V L+I+ L
Sbjct: 947 ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 406 GSARRPVPAAKIFSLLPEDQKCTA---TYTALIGVYFSAGSADKALKIYKTMCRKGIHPS 462
G + R A +F+ + + T TY +LI AG ++A KIY + R G+ P+
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPN 1066
Query: 463 LGTFNVLLAGLEKLGRVSDA 482
+ TFN L+ G G+ A
Sbjct: 1067 VFTFNALIRGYSLSGKPEHA 1086
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAV 102
H + A F ++ G TY ++ EA I + VF ++ G D
Sbjct: 762 HNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVA 821
Query: 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162
TY ++ +G +D +++EM EC +++ + L V +A D+Y ++
Sbjct: 822 TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881
Query: 163 IQ-RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
+ R P TY L++ L ++G+ EA ++F M + G +P+ A NILI KAGE
Sbjct: 882 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941
Query: 222 TRTIILILRYM 232
+ + M
Sbjct: 942 ADAACALFKRM 952
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G D TY+ ++D R+ + F+ ++E G+N D V Y +++ L + ++ A
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEA 1015
Query: 121 VNIWEEMKL-KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+ ++ EMK + P + +Y + + L + V+EA +Y E+ + GL PN +T+ L+
Sbjct: 1016 LVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1075
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKA 207
+GK E A ++ M G P+
Sbjct: 1076 GYSLSGKPEHAYAVYQTMVTGGFSPNTG 1103
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/393 (20%), Positives = 150/393 (38%), Gaps = 54/393 (13%)
Query: 82 ISSMKYVFE-LMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYT 140
+S + +FE ++ G+ TY ++ L A ++ A +++ ++K C P + +Y
Sbjct: 765 VSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYN 824
Query: 141 AYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK-MQE 199
+ + ++ E ++YKEM N T+ +++ LV+AG ++AL+++ M +
Sbjct: 825 FLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSD 884
Query: 200 AGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS 259
P LI+ K+G + M + ++ + F A E D
Sbjct: 885 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEAD- 943
Query: 260 LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDK 319
A +L ++ +
Sbjct: 944 ------------------------------------------------AACALFKRMVKE 955
Query: 320 SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKV 379
++ D S +++ C R D L F+ + LN + Y +I L K + +
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEA 1015
Query: 380 AEIVEEM-TKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIG 436
+ EM T G + +Y LI LG A A KI++ + + T+ ALI
Sbjct: 1016 LVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1075
Query: 437 VYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469
Y +G + A +Y+TM G P+ GT+ L
Sbjct: 1076 GYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF-ELMQEKGINIDAVTYTSVMHWLSNAGD 116
+ G N D Y +++ G++ R+ +F E+ +GI D TY S++ L AG
Sbjct: 988 KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGM 1047
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
V+ A I+ E++ P + ++ A ++ L+ + + A VY+ M+ G PN TY
Sbjct: 1048 VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1107
Query: 177 L 177
L
Sbjct: 1108 L 1108
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 401 LIHRLGSARRPVPAAKIFSLLPEDQKC---TATYTALIGVYFSAGSADKALKIYKTMCRK 457
LI L + R A ++F + D C A Y LI + AG AD A ++K M ++
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGML-DYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE 955
Query: 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAV 502
G+ P L T++VL+ L +GRV + Y KE ++ L+ D V
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKE---LKESGLNPDVV 997
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 36 VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK 95
+N + K+H +E+A + FN + SRG D +TY +++ G A + ++ +Q
Sbjct: 1003 INGLGKSHR-LEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 96 GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY 139
G+ + T+ +++ S +G + A +++ M P +Y
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 117/441 (26%), Positives = 185/441 (41%), Gaps = 20/441 (4%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G D T+ ++ A ++ + E M G+ D T+T+VM GD+DGA
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMI-QRGLPPNCYTYTVLME 179
+ I E+M C + VS + RV++A + +EM Q G P+ YT+ L+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
L +AG + A+EI M + G PD N +I CK GE + + +L M +
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299
+ + T + EN QV + + + D+ S+ QGL L
Sbjct: 364 NTVTYNTLIST--LCKEN-----QVEEATELARVLTSKG---ILPDVCTFNSLIQGLCLT 413
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+ + VA++ L + K + D + +I+ C + D AL +
Sbjct: 414 ---RNHRVAME-LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF- 418
Y LI K N + EI +EM G S LI L +RR AA++
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 419 SLLPEDQKCTA-TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
++ E QK TY +L+ + G KA I + M G P + T+ L++GL K G
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 478 RVSDAEIYRKEKKSIQADALS 498
RV E+ K +SIQ ++
Sbjct: 590 RV---EVASKLLRSIQMKGIN 607
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/474 (20%), Positives = 196/474 (41%), Gaps = 88/474 (18%)
Query: 31 WDSYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKY 87
W + +VN ++ +E A F +S GF D++T+ T+++ +A +
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
+ ++M ++G + D TY SV+ L G+V AV + ++M ++C P V+Y + L
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
++V+EAT++ + + +G+ P+ T+ L++ L + A+E+F +M+ G +PD+
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436
Query: 208 ACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267
N+LI+ C G+ + +L+ M+ + A + + F A++
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTR--------- 487
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
E I D V V+ +N V ++L+ G+
Sbjct: 488 -EAEEIFDEMEVHGVS--------------------RNSVTYNTLIDGL----------- 515
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
C RR + A + + ++ Y +L+ + K A+IV+ MT
Sbjct: 516 --------CKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKA 447
G + TY LI AG + A
Sbjct: 568 SNGCEPDI---------------------------------VTYGTLISGLCKAGRVEVA 594
Query: 448 LKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA-EIYRK--EKKSIQADALS 498
K+ +++ KGI+ + +N ++ GL + + ++A ++R+ E+ DA+S
Sbjct: 595 SKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVS 648
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
G + + TY T++D +++R+ + + M +G D TY S++ GD+
Sbjct: 499 HGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKK 558
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A +I + M C P IV+Y + L RV+ A+ + + + +G+ + Y +++
Sbjct: 559 AADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQ 618
Query: 180 YLVRAGKYEEALEIFSKMQEAG-VQPDKAACNILIEKCCKAG 220
L R K EA+ +F +M E PD + I+ C G
Sbjct: 619 GLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
Query: 30 KWDSYTVNQVLKTH----PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85
K D YT N +L TH ++KA ++ S G D TY T++ +A R+
Sbjct: 537 KPDKYTYNSLL-THFCRGGDIKKAADIVQAMT-SNGCEPDIVTYGTLISGLCKAGRVEVA 594
Query: 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM-KLKECYPTIVSY-TAYM 143
+ +Q KGIN+ Y V+ L A+N++ EM + E P VSY +
Sbjct: 595 SKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFR 654
Query: 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK-MQEA 200
+ ++EA D E++++G P + +L E L+ E +++ + MQ+A
Sbjct: 655 GLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 180/416 (43%), Gaps = 23/416 (5%)
Query: 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN 149
E MQ GI+ + TY+ +++ + A+ + +M P IV+ + +
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHG 164
Query: 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC 209
+R+ +A + +M++ G P+ +T+ L+ L R + EA+ + +M G QPD
Sbjct: 165 NRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224
Query: 210 NILIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQV-H 265
I++ CK G+ + +L+ M++ ++ + Y +AL +K ++ +L ++ +
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284
Query: 266 PQFSPEFISDN-------------DAVEFVTTDIEGPLSID----QGLVLILLKKKNLVA 308
P ++ N DA ++ IE ++ + L+ +K+ LV
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344
Query: 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIG 368
+ L ++ +SI D S++I C H R D A FE + D Y LI
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 404
Query: 369 ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC- 427
K + E+ EM++ G LIH AR A +F + D
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP 464
Query: 428 -TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
TY+ L+ + G + AL +++ + R + P + T+N+++ G+ K G+V D
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL-------PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ + S ++ +K +E L+ + RS +
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS--ID 358
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
D FTY+++++ F R+ K++FELM K + VTY +++ A VD + +
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+YT + F A V+K+M+ G+ P+ TY++L++ L
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCN 478
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK E AL +F +Q + ++PD NI+IE CKAG+
Sbjct: 479 NGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGK 516
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 99/178 (55%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
R N + T++ ++D F + ++ + +++ M ++ I+ D TY+S+++ +D
Sbjct: 320 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 379
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A +++E M K+C+P +V+Y +K RV E ++++EM QRGL N TYT L+
Sbjct: 380 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIH 439
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+A + + A +F +M GV PD +IL++ C G+ T +++ Y++ +++
Sbjct: 440 GFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 92/178 (51%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG + TYTT++ F +A+ + + VF+ M G+ D +TY+ ++ L N G V+
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVET 484
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ ++E ++ + P I +Y ++ + +V++ D++ + +G+ PN TYT +M
Sbjct: 485 ALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 544
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
R G EEA +F +M+E G PD N LI + G+ ++R M+ R
Sbjct: 545 GFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 602
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 90/167 (53%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY T++ F +AKR+ +F M ++G+ + VTYT+++H A + D A ++++M
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
P I++Y+ + L N +V+ A V++ + + + P+ YTY +++E + +AGK
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
E+ ++F + GV+P+ ++ C+ G + R MKE
Sbjct: 518 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKE 564
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 174/433 (40%), Gaps = 19/433 (4%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G+ D FT+ T++ R S + + M KG D VTY V++ L GD+D A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+++ ++M+ + P +V Y + L V +A +++ EM +G+ PN TY L+
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L G++ +A + S M E + P+ + LI+ K G+ + M + +
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+ + F + D D S + + + +D+G+ L
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 301 -LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+ ++ LV ++ +T+I R D A + F+ V + +
Sbjct: 421 EMSQRGLVG---------------NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y L+ L + E + ++ +Y ++I + A + +F
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 525
Query: 420 LLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL-AGLEKL 476
L + TYT ++ + G ++A +++ M +G P GT+N L+ A L
Sbjct: 526 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Query: 477 GRVSDAEIYRKEK 489
+ + AE+ R+ +
Sbjct: 586 DKAASAELIREMR 598
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/427 (20%), Positives = 166/427 (38%), Gaps = 64/427 (14%)
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
+D AVN++ +M +P+IV ++ + + ++ + ++M G+ N YTY++
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236
L+ R + AL + +KM + G +PD N L+ C + ++ M E
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 237 L--------ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288
L + +F+ + VA + ++ P I N + DI+
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK--RGDIDL 239
Query: 289 PLS---------IDQGLVL------ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIE 333
LS I+ G+V+ L KN+ +L + + +K I+ + +++I
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Query: 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393
C++ R A ++ +N + ALI +K + ++ +EM K
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359
Query: 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-------------------------- 427
++ + LI+ R A +F L+ + C
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418
Query: 428 ------------TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475
T TYT LI +F A D A ++K M G+ P + T+++LL GL
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCN 478
Query: 476 LGRVSDA 482
G+V A
Sbjct: 479 NGKVETA 485
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G D TY+ +LD ++ + VFE +Q + D TY ++ + AG V+
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVE 518
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+++ + LK P +V+YT M +EA +++EM + G P+ TY L+
Sbjct: 519 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+R G + E+ +M+ C G+ TI L+ + + RL
Sbjct: 579 RAHLRDGDKAASAELIREMRS----------------CRFVGDASTIGLVTNMLHDGRL 621
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/490 (21%), Positives = 206/490 (42%), Gaps = 29/490 (5%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR 60
+R+ +S++ K+ D D++K+ P N++L M K L + + +
Sbjct: 54 LRNRLSDIIKV--DDAVDLFGDMVKSRPFP-SIVEFNKLLSAVAKMNKFELVISLGEQMQ 110
Query: 61 --GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
G +HD +TY+ ++ F ++S V M + G D VT +S+++ ++ +
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
AV + ++M P ++T + LFL+++ EA + +M+QRG P+ TY ++
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238
L + G + AL + +KM+ A ++ + N +I+ CK + + M+ +
Sbjct: 231 NGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIR 290
Query: 239 LRYPVFKEALQTF----KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294
+ + + +D + L + + +P ++ N
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFN------------------ 332
Query: 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM 354
L+ K+ LV + L ++ +SI D+ + +I C H R D A F++ V
Sbjct: 333 ALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392
Query: 355 DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414
D Y LI K E+ EM++ G +I A A
Sbjct: 393 DCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSA 452
Query: 415 AKIFSLLPEDQKCT--ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
+F + ++ T TY+ L+ S G D AL I+K + + + ++ +N ++ G
Sbjct: 453 QMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEG 512
Query: 473 LEKLGRVSDA 482
+ K G+V +A
Sbjct: 513 MCKAGKVGEA 522
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 164/424 (38%), Gaps = 86/424 (20%)
Query: 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128
+ T++D + + + +F M+ KGI + VTY S+++ L N G A + M
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 129 LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188
K+ P +V++ A + F ++ EA +++EMIQR + P+ TY +L+ + +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEAL 248
EA ++F M P+ N LI CK + + R M + L + +
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Query: 249 QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVA 308
Q F A + DS + +S+ + +T I
Sbjct: 441 QGFFQAGDCDS-----AQMVFKQMVSNRVPTDIMTYSI---------------------- 473
Query: 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIG 368
LL G+ C + + D AL+ F+Y K ++ L Y
Sbjct: 474 ---LLHGL-------------------CSYGKLDTALVIFKYLQKSEMELNIFIY----- 506
Query: 369 ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCT 428
NT ++E M KAG ++G A + S+ P+
Sbjct: 507 -----NT------MIEGMCKAG-------------KVGEAWDLFCS---LSIKPD----V 535
Query: 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL-AGLEKLGRVSDAEIYRK 487
TY +I S +A +++ M G P+ GT+N L+ A L R + AE+ ++
Sbjct: 536 VTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKE 595
Query: 488 EKKS 491
+ S
Sbjct: 596 MRSS 599
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY T+++ F + KR+ +F M ++G+ + VTYT+++ AGD D A ++++M
Sbjct: 400 TYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQM 459
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
I++Y+ + L ++ A ++K + + + N + Y ++E + +AGK
Sbjct: 460 VSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKV 519
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
EA ++F + ++PD N +I C + + R MKE+
Sbjct: 520 GEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG + TYTT++ F +A S + VF+ M + D +TY+ ++H L + G +D
Sbjct: 427 RGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDT 486
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ I++ ++ E I Y ++ + +V EA D++ + + P+ TY ++
Sbjct: 487 ALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMIS 543
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
L +EA ++F KM+E G P+ N LI
Sbjct: 544 GLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIR 578
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/352 (17%), Positives = 136/352 (38%), Gaps = 53/352 (15%)
Query: 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
+V +A D++ +M++ P+ + L+ + + K+E + + +MQ G+ D +
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 211 ILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSP 270
I I C + ++L+L V + ++ + P
Sbjct: 123 IFINCFC---------------RRSQLSLALAVLAKMMKL----------------GYEP 151
Query: 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIST 330
+ ++ +++ + G K + +L+ +++ + D+ +T
Sbjct: 152 DIVT-------LSSLLNG-----------YCHSKRISDAVALVDQMVEMGYKPDTFTFTT 193
Query: 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
+I H + A+ + V+ + Y ++ L K ++ +M A
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR 253
Query: 391 HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKAL 448
V + +I L R A +F+ + + TY +LI + G A
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313
Query: 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE--KKSIQADALS 498
++ M K I+P++ TFN L+ K G++ +AE +E ++SI D ++
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTIT 365
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 198/474 (41%), Gaps = 56/474 (11%)
Query: 32 DSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91
D T+ L + E A +F + + + GF D T++L F + VF++
Sbjct: 197 DYRTIVNALCKNGYTEAAEMFMSKILKI-GFVLDSHIGTSLLLGFCRGLNLRDALKVFDV 255
Query: 92 M-QEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND 150
M +E ++V+Y+ ++H L G ++ A + ++M K C P+ +YT +K L
Sbjct: 256 MSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315
Query: 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
+ +A +++ EMI RG PN +TYTVL++ L R GK EEA + KM + + P N
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYN 375
Query: 211 ILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF-KVADENDS---LLWQVHP 266
LI CK G +L M++ F E ++ +V + L +
Sbjct: 376 ALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN 435
Query: 267 QFSPEFISDNDAVEFVTT-----------------DIEGPLSIDQGLVLILLKKKNLVAI 309
SP+ +S N ++ + DIE ++ K+
Sbjct: 436 GLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVA 495
Query: 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGI 369
+ L ++ K I LD +T+I+ C + AL E VKM + L L +I
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRI-LTTPHSLNVI-- 552
Query: 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA 429
L+ K ++ EE+ G I++LG L+P
Sbjct: 553 ---LDMLSKGCKVKEELAMLGK----------INKLG-------------LVPS----VV 582
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
TYT L+ +G + +I + M G P++ + +++ GL + GRV +AE
Sbjct: 583 TYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 52/322 (16%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D T+T +++ F + + LM KGI++D VT T+++ + G A+ I
Sbjct: 475 DCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFIL 534
Query: 125 EEM-----------------------KLKE------------CYPTIVSYTAYMKILFLN 149
E + K+KE P++V+YT + L +
Sbjct: 535 ETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRS 594
Query: 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC 209
+ + + + M G PN Y YT+++ L + G+ EEA ++ S MQ++GV P+
Sbjct: 595 GDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654
Query: 210 NILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADE----------NDS 259
++++ G+ + +R M E L ++ LQ F ++ + +D
Sbjct: 655 TVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDI 714
Query: 260 LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDK 319
L + P+ E IS VE + I G LV L K+ + L+ ++++
Sbjct: 715 ALRETDPECINELIS---VVEQLGGCISGLCIF---LVTRLCKEGRTDESNDLVQNVLER 768
Query: 320 SIQLDSAVISTIIEVNCDHRRR 341
+ L+ A + I+E C ++
Sbjct: 769 GVFLEKA-MDIIMESYCSKKKH 789
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G D Y T+ G+ K+IS + +FE M++ G + D TY ++ G+VD
Sbjct: 436 KGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDE 495
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+NI+EE++ +C P I+SY + + L N V EA +KEM ++GL P+ TY+ LME
Sbjct: 496 AINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME 555
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL-- 237
+ + E A +F +M G QP+ NIL++ K G T + + MK+ L
Sbjct: 556 CFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTP 615
Query: 238 -ALRYPVFKEALQTF-----KVADENDSLLWQVHP 266
++ Y V E LQ+ ++ +N W V P
Sbjct: 616 DSITYTVL-ERLQSVSHGKSRIRRKNPITGWVVSP 649
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 183/441 (41%), Gaps = 27/441 (6%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
+ FTY +L + ++ S V+ ++ G +D Y ++ L+ + A ++
Sbjct: 202 NSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVF 258
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
E+MK + C +YT ++ + + EA ++ EMI GL N Y LM+ L +
Sbjct: 259 EDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKG 318
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF 244
++A+++FS+M E G +P++ ++L+ G+ + ++ K Y
Sbjct: 319 KMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYL 378
Query: 245 KEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304
L E L + +S + D+ + + G K
Sbjct: 379 VRTLSKLGHVSEAHRLFCDM---WSFPVKGERDSYMSMLESLCGA-------------GK 422
Query: 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYL 364
+ AI+ +LS I +K + D+ + +T+ ++ FE K + + Y
Sbjct: 423 TIEAIE-MLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYN 481
Query: 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424
LI ++ + I EE+ ++ + LI+ LG A F + E
Sbjct: 482 ILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEK 541
Query: 425 --QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
TY+ L+ + + A +++ M KG P++ T+N+LL LEK GR ++A
Sbjct: 542 GLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEA 601
Query: 483 -EIYRKEKKSIQADALSKDAV 502
++Y K K+ L+ D++
Sbjct: 602 VDLYSKMKQQ----GLTPDSI 618
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 23 LLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79
L+K +K +S+T +L+ + KA+ + + R G D F Y +LD +
Sbjct: 193 LVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRG-GHKLDIFAYNMLLDALAKD 251
Query: 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY 139
++ VFE M+++ D TYT ++ + G D AV ++ EM + +V Y
Sbjct: 252 EKACQ---VFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGY 308
Query: 140 TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME-------------------- 179
M++L V +A V+ M++ G PN YTY++L+
Sbjct: 309 NTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKR 368
Query: 180 --------YLVRA----GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227
YLVR G EA +F M V+ ++ + ++E C AG+T I
Sbjct: 369 YMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIE 428
Query: 228 ILRYMKE 234
+L + E
Sbjct: 429 MLSKIHE 435
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 33 SYTVNQVLKTHPPMEKAWLFFN-WVSRSRGFNHDRFTYTTMLD-IFGEAKRISSMKYVFE 90
SY V + K E LF + W +G +R +Y +ML+ + G K I +++ + +
Sbjct: 376 SYLVRTLSKLGHVSEAHRLFCDMWSFPVKG---ERDSYMSMLESLCGAGKTIEAIEMLSK 432
Query: 91 LMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND 150
+ EKG+ D + Y +V L + +++E+MK P I +Y +
Sbjct: 433 I-HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491
Query: 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
V EA ++++E+ + P+ +Y L+ L + G +EA F +MQE G+ PD +
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551
Query: 211 ILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEAL 248
L+E C + K R+ + Y +F+E L
Sbjct: 552 TLME-C--------------FGKTERVEMAYSLFEEML 574
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+ +G N D TY+T+++ FG+ +R+ +FE M KG + VTY ++ L G
Sbjct: 539 QEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRT 598
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKI 145
AV+++ +MK + P ++YT ++
Sbjct: 599 AEAVDLYSKMKQQGLTPDSITYTVLERL 626
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 78/167 (46%), Gaps = 6/167 (3%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
T ++ FG + ++ L+++ + +++ TY ++ + D A +++ E+
Sbjct: 173 TVNILIGFFGNTE---DLQMCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEI 229
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+ I +Y + L +++ A V+++M +R + YTYT+++ + R GK
Sbjct: 230 RRGGHKLDIFAYNMLLDALAKDEK---ACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKC 286
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
+EA+ +F++M G+ + N L++ K I + M E
Sbjct: 287 DEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVE 333
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 353 KMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPV 412
K DL + Y L+ ++ + K ++ E+ + GH L ++ +L+ L +
Sbjct: 196 KWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEK-- 253
Query: 413 PAAKIFSLLPEDQK---CTA---TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466
A ++F ED K C TYT +I G D+A+ ++ M +G+ ++ +
Sbjct: 254 -ACQVF----EDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGY 308
Query: 467 NVLLAGLEKLGRVSDAEI 484
N L+ L K G++ D I
Sbjct: 309 NTLMQVLAK-GKMVDKAI 325
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 200/481 (41%), Gaps = 60/481 (12%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+GF D TY ++L F + +K V++ MQ+ G D +TY +++H G +D
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDL 420
Query: 120 AVNIWEEMK-LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A+ ++++MK L P ++YT + L +R EA + EM+ G+ P TY+ L+
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI------------- 225
+AGK EEA + FS M +G +PD A +++++ + ETR
Sbjct: 481 CGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540
Query: 226 -------ILILRYMKENR------------------------LALRYPVFKEALQTFKVA 254
++IL MKENR + ++ F A + KVA
Sbjct: 541 PSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVA 600
Query: 255 D------ENDSLLWQVHPQFSPEFISDN-DAVEFVTTDIEGPLS-IDQGLVLILLKKKNL 306
END+LL + S S+ + +EF+ G I + L+++ K NL
Sbjct: 601 ITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNL 660
Query: 307 -VAIDSLLSGIMDKSIQLDSAVI-STIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYL 364
A+D + S+ + T++ + A F +
Sbjct: 661 SAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCK 720
Query: 365 ALIGILIKLNTFPKVAEIV--EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422
+++ + KL FP+ A V + TK H + +I G + A + L
Sbjct: 721 SMVVVYCKLG-FPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLR 779
Query: 423 EDQKCT--ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
+ + T+ +L+ Y G ++A I+ TM R G P++ + N+LL L GR+
Sbjct: 780 QSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLE 839
Query: 481 D 481
+
Sbjct: 840 E 840
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYV--FELMQEKGINIDAVTYTSVMHWLSNAG 115
R RG D ++ T+++ ++ ++ V ++++ G+ DA+TY +++ S
Sbjct: 252 RQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDS 311
Query: 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175
++DGAV ++E+M+ C P + +Y A + + EA ++ E+ +G P+ TY
Sbjct: 312 NLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYN 371
Query: 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMK-- 233
L+ R E+ E++ +MQ+ G D+ N +I K G+ + + + MK
Sbjct: 372 SLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
Query: 234 --ENRLALRYPVFKEAL 248
N A+ Y V ++L
Sbjct: 432 SGRNPDAITYTVLIDSL 448
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/400 (20%), Positives = 169/400 (42%), Gaps = 26/400 (6%)
Query: 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128
YT +++ +G+ K + V +++ G D T+ S+M + G + A I+ M
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 129 LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188
PT+ S + L ++ R++E V +E+ G + + ++++ RAG
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874
Query: 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEAL 248
E +I+S M+ AG P ++IE CK R +++ M+E + ++ L
Sbjct: 875 EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934
Query: 249 QTFKVADENDSLLWQVHPQ-----FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKK 303
+ + ++ + QV+ + P+ + N + D ++G L++ +
Sbjct: 935 KMYTAIEDYKKTV-QVYQRIKETGLEPDETTYNTLIIMYCRDRRP----EEG-YLLMQQM 988
Query: 304 KNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY 363
+NL +D + ++IS + C + A FE + L L+R+ Y
Sbjct: 989 RNLG---------LDPKLDTYKSLISAFGKQKC----LEQAEQLFEELLSKGLKLDRSFY 1035
Query: 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL-- 421
++ I + K ++++ M AG + LL+ S+ P A K+ S L
Sbjct: 1036 HTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKD 1095
Query: 422 PEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461
E + T Y+++I Y + + ++ M ++G+ P
Sbjct: 1096 TEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEP 1135
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/407 (19%), Positives = 155/407 (38%), Gaps = 40/407 (9%)
Query: 99 IDAVTYTSVMHWLS-NA---GDVDGAVNIWEEMKL-----KECYPTIVS----YTAYMKI 145
++ + ++ HW S NA + G + W + L PT+ Y A M +
Sbjct: 175 LEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGV 234
Query: 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE--ALEIFSKMQEAGVQ 203
+ + +A ++ M QRG P+ ++ L+ +++G A+E+ ++ +G++
Sbjct: 235 YSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLR 294
Query: 204 PDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF---KVADENDSL 260
PD N L+ C + + + M+ +R + + + +A E + L
Sbjct: 295 PDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERL 354
Query: 261 LWQVHPQ-FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDK 319
++ + F P+ ++ N L+ +++N + + +
Sbjct: 355 FMELELKGFFPDAVTYN------------------SLLYAFARERNTEKVKEVYQQMQKM 396
Query: 320 SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPK 378
D +TII + + D AL ++ + N + Y LI L K N +
Sbjct: 397 GFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVE 456
Query: 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS--LLPEDQKCTATYTALIG 436
A ++ EM G + + LI A + A FS L + Y+ ++
Sbjct: 457 AAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLD 516
Query: 437 VYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
V KA +Y+ M G PS + +++ GL K R D +
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQ 563
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 8/226 (3%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
R+ G + TY +++ FG+ K + + +FE + KG+ +D Y ++M ++G
Sbjct: 989 RNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSD 1048
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
A + + MK PT+ + M + +EA V + + Y+ +
Sbjct: 1049 SKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSV 1108
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
++ +R+ Y +E +M++ G++PD + + E ++L+L+ +++ +
Sbjct: 1109 IDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALED--I 1166
Query: 238 ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVT 283
P+ A + + E D ++ I DN A+ FV
Sbjct: 1167 GFDLPIRLLAGRPELLVSEVDGWFEKLKS------IEDNAALNFVN 1206
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 5/181 (2%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF + + MLD F A I +K ++ M+ G Y ++ L V A
Sbjct: 852 GFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDA 911
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+ EM+ + + + +K+ + K+ VY+ + + GL P+ TY L+
Sbjct: 912 EIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILI-----EKCCKAGETRTIILILRYMKEN 235
R + EE + +M+ G+ P LI +KC + E L+ + +K +
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 236 R 236
R
Sbjct: 1032 R 1032
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 414 AAKIFSLLPEDQKCTA---TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470
A K+F + E +C TY A+I VY G A +A +++ + KG P T+N LL
Sbjct: 316 AVKVFEDM-EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLL 374
Query: 471 AGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGDGVL 519
R + E ++ + +Q KD + I +YG G L
Sbjct: 375 YA---FARERNTEKVKEVYQQMQKMGFGKDEMTYNTII--HMYGKQGQL 418
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/461 (22%), Positives = 197/461 (42%), Gaps = 22/461 (4%)
Query: 29 IKWDSYTVNQVLKTHPPMEK---AWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85
IK V+ VLK+ EK AW FF W + + + H+ Y +++D+ AK + +
Sbjct: 112 IKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRI 171
Query: 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145
++V +++ + +++ G V+ + +W +MK PT+ +Y M
Sbjct: 172 RFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNG 231
Query: 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD 205
L V A V++ M + P+ TY +++ +AG+ ++A+E M+ G + D
Sbjct: 232 LVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEAD 291
Query: 206 KAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVH 265
K +I+ C + + + + + M E ++ P +L + E L + +
Sbjct: 292 KITYMTMIQACYADSDFGSCVALYQEMDEK--GIQVPPHAFSLVIGGLCKEGK--LNEGY 347
Query: 266 PQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDS 325
F + + ++I L+ K ++ LL ++D+ + D
Sbjct: 348 TVFE----------NMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDV 397
Query: 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPKVAEIVE 384
S ++ C + R + AL F ++ + D L + Y +LI L K + + E
Sbjct: 398 VTYSVVVNGLCKNGRVEEALDYF-HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456
Query: 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA---TYTALIGVYFSA 441
EM++ G + Y LI R+ A +F + E++ C TYT L+ F
Sbjct: 457 EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKE 516
Query: 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
++ALK++ M KGI P+ F L GL G+V+ A
Sbjct: 517 HRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARA 557
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF D TY+ +++ + R+ F + G+ I+++ Y+S++ L AG VD A
Sbjct: 392 GFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 451
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM-IQRGLPPNCYTYTVLME 179
++EEM K C Y A + + +V EA ++K M + G YTYT+L+
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLS 511
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILIL 229
+ + + EEAL+++ M + G+ P A L C +G+ IL
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKIL 561
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 18/263 (6%)
Query: 18 DSAQ---DLLKNLPIKWDSYTVNQVLK-------THPPMEKAWLFFNWVSRSRGFNHDRF 67
DSA+ +++++ IK D T N ++K T MEK +RG D+
Sbjct: 239 DSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDM-----ETRGHEADKI 293
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY TM+ S +++ M EKGI + ++ V+ L G ++ ++E M
Sbjct: 294 TYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENM 353
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
K P + YT + + V++A + MI G P+ TY+V++ L + G+
Sbjct: 354 IRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRV 413
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE---NRLALRYPVF 244
EEAL+ F + G+ + + LI+ KAG + M E R + Y
Sbjct: 414 EEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNAL 473
Query: 245 KEALQTFKVADENDSLLWQVHPQ 267
+A + DE +L ++ +
Sbjct: 474 IDAFTKHRKVDEAIALFKRMEEE 496
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Query: 321 IQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVA 380
I+ D +T+I+ C + A+ ++ Y+ +I + F
Sbjct: 253 IKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCV 312
Query: 381 EIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS--LLPEDQKCTATYTALIGVY 438
+ +EM + G + + +L+I L + +F + + A YT LI Y
Sbjct: 313 ALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGY 372
Query: 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485
+GS + A+++ M +G P + T++V++ GL K GRV +A Y
Sbjct: 373 AKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 419
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 18 DSAQDLLKNLPIKW---DSYTVNQVLKT---HPPMEKAWLFFNWVSRSRGFNHDRFTYTT 71
D A+ L + + K DSY N ++ H +++A F + G + +TYT
Sbjct: 449 DEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTI 508
Query: 72 MLD-IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130
+L +F E + ++K ++++M +KGI A + ++ L +G V A I +E+
Sbjct: 509 LLSGMFKEHRNEEALK-LWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELA-- 565
Query: 131 ECYPTIVSYTA----YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186
P V A + L R+KEA + + +RG TV++ L + GK
Sbjct: 566 ---PMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGK 622
Query: 187 YEEALEI 193
+ A+++
Sbjct: 623 ADLAMKL 629
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 61/353 (17%), Positives = 122/353 (34%), Gaps = 53/353 (15%)
Query: 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190
ECY ++V A K + DR++ V E+ + P L++ + G EE
Sbjct: 153 ECYVSLVDVLALAKDV---DRIRF---VSSEIKKFEFPMTVSAANALIKSFGKLGMVEEL 206
Query: 191 LEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQT 250
L ++ KM+E G++P N L+ A + + M+ R+ + ++
Sbjct: 207 LWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKG 266
Query: 251 FKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAID 310
+ A + + ++ + + D + ++T ++ + +
Sbjct: 267 YCKAGQTQKAMEKLRDMETRG--HEADKITYMT------------MIQACYADSDFGSCV 312
Query: 311 SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL 370
+L + +K IQ+ S +I C + + FE ++ Y LI
Sbjct: 313 ALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGY 372
Query: 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTAT 430
K + ++ M G V T
Sbjct: 373 AKSGSVEDAIRLLHRMIDEGFKPDV---------------------------------VT 399
Query: 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
Y+ ++ G ++AL + T G+ + ++ L+ GL K GRV +AE
Sbjct: 400 YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAE 452
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 101/178 (56%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
R N D FT++ ++D F + ++ + +++ M ++ I+ VTY+S+++ +D
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A ++E M K C+P +V+Y +K RV+E +V++EM QRGL N TY +L++
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
L +AG + A EIF +M GV P+ N L++ CK G+ +++ Y++ +++
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 103/460 (22%), Positives = 192/460 (41%), Gaps = 24/460 (5%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
++ A F + +SR F ++ +L + + + + E MQ GI + TY+
Sbjct: 62 LDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
+++ + A+ + +M P IV+ ++ + + R+ EA + +M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225
G PN T+ L+ L K EA+ + +M G QPD +++ CK G+T
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 226 ILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQVHPQ-FSPEFISD------ 275
+L M++ +L L Y + L +K D+ +L ++ + P ++
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 276 -------NDAVEFVTTDIEGPLSID----QGLVLILLKKKNLVAIDSLLSGIMDKSIQLD 324
+DA ++ IE ++ D L+ +K+ LV + L ++ +SI
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384
S++I C H R D A FE+ V + Y LI K + E+
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAG 442
EM++ G +LI L A A +IF + D TY L+ G
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 443 SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+KA+ +++ + R + P++ T+N+++ G+ K G+V D
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAV 102
H +++A F ++ F D TY T++ F + KR+ VF M ++G+ + V
Sbjct: 374 HDRLDEAKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162
TY ++ L AGD D A I++EM P I++Y + L N ++++A V++ +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 163 IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
+ + P YTY +++E + +AGK E+ ++F + GV+PD A N +I C+ G
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 552
Query: 223 RTIILILRYMKEN 235
+ + MKE+
Sbjct: 553 EEADALFKEMKED 565
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL---PIKWDSYT----VNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ I D +T ++ +K +E L+ V RS +
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRS--ID 358
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
TY+++++ F R+ K +FE M K D VTY +++ V+ + +
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+Y ++ LF A +++KEM+ G+PPN TY L++ L +
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK E+A+ +F +Q + ++P NI+IE CKAG+
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 16/179 (8%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G + TY T+LD + ++ VFE +Q + TY ++ + AG V+
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+++ + LK P +V+Y + +EA ++KEM + G PN Y L+
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+R G E + E+ +M+ G AG+ TI L+ + + RL
Sbjct: 579 RARLRDGDREASAELIKEMRSCGF----------------AGDASTIGLVTNMLHDGRL 621
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG N + TY TML F A +I F M+++ ID VTYT+V+H AG++
Sbjct: 224 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A N+++EM + P++ +Y A +++L D V+ A +++EM++RG PN TY VL+
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 343
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232
L AG++ E+ +M+ G +P+ N++I + E + + M
Sbjct: 344 GLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+ AW FF + R D TYTT++ FG A I + VF+ M +G+ TY
Sbjct: 246 IRHAWEFF-LEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYN 304
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
+++ L +V+ AV ++EEM + P + +Y ++ LF ++ + M
Sbjct: 305 AMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENE 364
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213
G PN TY +++ Y + E+AL +F KM P+ NILI
Sbjct: 365 GCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 96/471 (20%), Positives = 173/471 (36%), Gaps = 89/471 (18%)
Query: 15 STWDSAQDLLKNLPIKWDSYTVNQVLK---THPPMEKAWLFFNWV-SRSRGFNHDRFTYT 70
+T Q LL W VN VLK H P KA FF+++ + R + HD ++
Sbjct: 38 TTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGP--KALQFFHFLDNHHREYVHDASSFD 95
Query: 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130
+DI ++ + M+ I T+ V ++AG D AV ++ M
Sbjct: 96 LAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEH 155
Query: 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190
C+ + S+ + +L + RV++A ++++ + R + TY V++ + +A
Sbjct: 156 GCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKA 214
Query: 191 LEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQT 250
LE+ +M E G+ P+ N +++ +AG+ R MK+ + + +
Sbjct: 215 LEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHG 274
Query: 251 FKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAID 310
F VA E +K+ V +
Sbjct: 275 FGVAGE--------------------------------------------IKRARNVFDE 290
Query: 311 SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL 370
+ G++ A + +I+V C + A++ FE V+ T Y LI L
Sbjct: 291 MIREGVLP-----SVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGL 345
Query: 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTAT 430
F + E+++ M G P Q T
Sbjct: 346 FHAGEFSRGEELMQRMENEGCE-----------------------------PNFQ----T 372
Query: 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481
Y +I Y +KAL +++ M P+L T+N+L++G+ R D
Sbjct: 373 YNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 423
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 38 QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI 97
QVL +E A + F + R RG+ + TY ++ A S + + + M+ +G
Sbjct: 308 QVLCKKDNVENAVVMFEEMVR-RGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGC 366
Query: 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE--- 154
+ TY ++ + S +V+ A+ ++E+M +C P + +Y + +F+ R ++
Sbjct: 367 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVV 426
Query: 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201
A + EM++RG P +T+ ++ L+ G A EI ++G
Sbjct: 427 AGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG 473
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 3/187 (1%)
Query: 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358
+L K K + L + + +D+ + I+ C +R AL + V+ +N
Sbjct: 170 VLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINP 228
Query: 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF 418
T Y ++ + E EM K + V ++H G A A +F
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288
Query: 419 SLLPEDQ--KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL 476
+ + ATY A+I V + + A+ +++ M R+G P++ T+NVL+ GL
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 348
Query: 477 GRVSDAE 483
G S E
Sbjct: 349 GEFSRGE 355
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 314 SGIMDKSIQL-----------DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA 362
+G DK+++L D A +TI++V C +R + A F +++ +++
Sbjct: 139 AGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFR-ALRGRFSVDTVT 197
Query: 363 YLALIGILIKLNTFPKVAEIVEEMTKAG--HSLGVYLGALL-IHRLGSARRPVPAAKIFS 419
Y ++ + PK E+++EM + G +L Y L R G R A F
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH----AWEFF 253
Query: 420 LLPEDQKC---TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL 476
L + + C TYT ++ + AG +A ++ M R+G+ PS+ T+N ++ L K
Sbjct: 254 LEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKK 313
Query: 477 GRVSDAEIYRKE 488
V +A + +E
Sbjct: 314 DNVENAVVMFEE 325
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 401 LIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIH 460
LIHR+ S R P+ K F+++ E Y SAG DKA+K++ M G
Sbjct: 113 LIHRMRSLRIG-PSPKTFAIVAER-------------YASAGKPDKAVKLFLNMHEHGCF 158
Query: 461 PSLGTFNVLLAGLEKLGRVSDA-EIYRKEKKSIQADALSKDAV 502
L +FN +L L K RV A E++R + D ++ + +
Sbjct: 159 QDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVI 201
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA-EIYR 486
T TY ++ + KAL++ K M +GI+P+L T+N +L G + G++ A E +
Sbjct: 195 TVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFL 254
Query: 487 KEKK 490
+ KK
Sbjct: 255 EMKK 258
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/463 (22%), Positives = 197/463 (42%), Gaps = 39/463 (8%)
Query: 35 TVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS-SMKYVFELMQ 93
TV Q L+ FF+WVS ++GF+H ++ ML+ G A+ ++ + ++F + +
Sbjct: 70 TVLQTLRLIKVPADGLRFFDWVS-NKGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIER 128
Query: 94 EKG--INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151
+ + + S++ NAG +V +++ MK P+++++ + + IL R
Sbjct: 129 RSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGR 188
Query: 152 VKEATDVYKEMIQR-GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
A D++ EM + G+ P+ YT+ L+ + +EA IF M+ PD N
Sbjct: 189 TGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYN 248
Query: 211 ILIEKCCKAGETRTIILILRYMKENRLALRYPV--FKEALQTFKVADENDSLLWQVHPQF 268
+I+ C+AG+ + +L M + + V + ++ + + E D + H
Sbjct: 249 TIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDML 308
Query: 269 SPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMD--KSIQLDSA 326
S +AV + T L+ L + I +L G D + D+
Sbjct: 309 SRGL--KPNAVTYNT------------LIKGLSEAHRYDEIKDILIGGNDAFTTFAPDAC 354
Query: 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEM 386
+ +I+ +CD D A+ F+ + M L+ + +Y LI L N F + + E+
Sbjct: 355 TFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNEL 414
Query: 387 TKAGHSLGVYLGALLIHRLGSARRPV-----------PAAKIF-SLLPEDQKCTATYTAL 434
+ V LG L +A P+ A K+F L+ + +Y L
Sbjct: 415 FEK----EVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTL 470
Query: 435 IGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
I + G A ++ M R+ P L T+ +L+ GL K+G
Sbjct: 471 ITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIG 513
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 139/332 (41%), Gaps = 30/332 (9%)
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F D T+ ++ +A + + VF+ M ++ D+ +Y+ ++ L + D A
Sbjct: 349 FAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAE 408
Query: 122 NIWEEMKLKE-------CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL--PPNCY 172
++ E+ KE C P +Y + L N + K+A V++++++RG+ PP
Sbjct: 409 TLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPP--- 465
Query: 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232
+Y L+ R GK++ A E+ M PD +LI+ K GE L+ M
Sbjct: 466 SYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRM 525
Query: 233 KENRLALRYPVFKEALQTF---KVADENDSLLW-------QVHPQFSPE-----FISDND 277
+ F L K A+E+ L+ + + S + F S
Sbjct: 526 LRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQK 585
Query: 278 AVEFVTTDI---EGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV 334
F+ + G L + L+ L + + L+ +L+ ++KS +D +T+IE
Sbjct: 586 EKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEG 645
Query: 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLAL 366
C H+R A + V++ + + + ++ L
Sbjct: 646 LCKHKRHSEAFSLYNELVELGNHQQLSCHVVL 677
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 400 LLIHRLGSARR-PVPAAKIFSLLPEDQKCTAT----YTALIGVYFSAGSADKALKIYKTM 454
L++ LG AR V +FS+ C + +LI Y +AG +++K+++TM
Sbjct: 105 LMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTM 164
Query: 455 CRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
+ GI PS+ TFN LL+ L K GR A
Sbjct: 165 KQMGISPSVLTFNSLLSILLKRGRTGMAH 193
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478
+YT L+ Y D+A+ ++ M +G+ P+ T+N L+ GL + R
Sbjct: 283 SYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHR 331
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 117/519 (22%), Positives = 205/519 (39%), Gaps = 45/519 (8%)
Query: 1 MRDTISNVYKILKYSTWDSA-QDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRS 59
+ DTI +++ W + Q+ +++L +WD V VL +E A FF W RS
Sbjct: 87 LEDTIC---RMMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERS 143
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
HDR T+ M+ + GE +++ + + M EKG+ D + ++ AG V
Sbjct: 144 GLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQE 203
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+V I+++MK TI SY + K++ R A + +M+ G+ P +TY +++
Sbjct: 204 SVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLW 263
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+ + E AL F M+ G+ PD A N +I C+ + + MK N++
Sbjct: 264 GFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGP 323
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN------------DAVEFVTTD-- 285
+ ++ + D D L ++ + I N DA + V
Sbjct: 324 SVVSYTTMIKGYLAVDRVDDGL-RIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNI 382
Query: 286 -----IEGPLSIDQGLVLILL----KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNC 336
+ D + L LL K ++ A +L + ++ ++ +IE C
Sbjct: 383 LKNMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQC 442
Query: 337 DHRRRDGALLAFEYSVKMD--------LNLERTAYLALIGILIKLNTFPKVAEIVEEMTK 388
+ A+ + ++ + L +E +AY +I L K + ++ K
Sbjct: 443 KASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMK 502
Query: 389 AGHSLGVYLGALLIHRLGSARRPVPAA-----KIFSLLPEDQKCTATYTALIGVYFSAGS 443
G L L+ G A+ P + KI S ++ A Y LI Y S G
Sbjct: 503 RGVQDQDALNNLI---RGHAKEGNPDSSYEILKIMSRRGVPRESNA-YELLIKSYMSKGE 558
Query: 444 ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
A +M G P F ++ L + GRV A
Sbjct: 559 PGDAKTALDSMVEDGHVPDSSLFRSVIESLFEDGRVQTA 597
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 167/393 (42%), Gaps = 83/393 (21%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
+YTTM+ + R+ +FE M+ GI +A TY++++ L +AG + A NI + M
Sbjct: 327 SYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNM 386
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKE---ATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
K P + ++K+L + + AT+V K M +P Y VL+E +A
Sbjct: 387 MAKHIAPK--DNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKA 444
Query: 185 GKYEEALEI-------------------------------------------FSKMQEAG 201
Y A+++ F ++ + G
Sbjct: 445 SAYNRAIKLLDTLIEKEIILRHQDTLEMEPSAYNPIIEYLCNNGQTAKAEVLFRQLMKRG 504
Query: 202 VQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADEN---- 257
VQ D+ A N LI K G + IL+ M + ++ ++++ E
Sbjct: 505 VQ-DQDALNNLIRGHAKEGNPDSSYEILKIMSRRGVPRESNAYELLIKSYMSKGEPGDAK 563
Query: 258 ---DSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK-------NLV 307
DS++ H S F S +E + D G + +++I++ K +L+
Sbjct: 564 TALDSMVEDGHVPDSSLFRS---VIESLFED--GRVQTASRVMMIMIDKNVGIEDNMDLI 618
Query: 308 A--IDSLL-SGIMDKSI-QLD-------SAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356
A +++LL G +++++ ++D +A + +++ V + + AL ++ ++ DL
Sbjct: 619 AKILEALLMRGHVEEALGRIDLLNQNGHTADLDSLLSVLSEKGKTIAALKLLDFGLERDL 678
Query: 357 NLERTAY----LALIGILIKLNTFPKVAEIVEE 385
+LE ++Y AL+G LN + + +I+E+
Sbjct: 679 SLEFSSYDKVLDALLGAGKTLNAYSVLCKIMEK 711
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489
+YT +I Y + D L+I++ M GI P+ T++ LL GL G++ +A
Sbjct: 327 SYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEA------- 379
Query: 490 KSIQADALSKDAVPMEEKI 508
K+I + ++K P + I
Sbjct: 380 KNILKNMMAKHIAPKDNSI 398
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
Query: 35 TVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE 94
T+ L + M+ A+ FN + ++G D FTY ++ R S + M E
Sbjct: 255 TIIDGLCKYKHMDDAFDLFNKM-ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Query: 95 KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM-KLKECYPTIVSYTAYMKILFLNDRVK 153
K IN D V + +++ G + A +++EM K K C+P +V+Y +K RV+
Sbjct: 314 KNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVE 373
Query: 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213
E +V++EM QRGL N TYT L+ +A + A +F +M GV PD NIL+
Sbjct: 374 EGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILL 433
Query: 214 EKCCKAGETRTIILILRYMKENRLAL---RYPVFKEAL-QTFKVAD 255
+ C G T +++ YM++ + L Y EAL + KV D
Sbjct: 434 DGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 112/496 (22%), Positives = 204/496 (41%), Gaps = 66/496 (13%)
Query: 19 SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78
S+ D +NL S V Q LK ++ A F + +SR F ++ +L +
Sbjct: 38 SSDDCRENL-----SRKVLQDLK----LDDAIGLFGDMVKSRPF-PSIVEFSKLLSAIAK 87
Query: 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS 138
+ + + E MQ GI+ + TY+ +++ + A+ I +M P+IV+
Sbjct: 88 MNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVT 147
Query: 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198
+ + +R+ EA + +M++ G P+ T+T L+ L + K EA+ + +M
Sbjct: 148 LNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMV 207
Query: 199 EAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADEND 258
G QPD +I CK GE + +L M++ ++ E D
Sbjct: 208 VKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKI------------------EAD 249
Query: 259 SLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMD 318
+++ T I+G L K K++ L + +
Sbjct: 250 VVIYN--------------------TIIDG-----------LCKYKHMDDAFDLFNKMET 278
Query: 319 KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378
K I+ D + +I C++ R A ++ ++N + + ALI +K +
Sbjct: 279 KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVE 338
Query: 379 VAEIVEEMTKAGHSL-GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC--TATYTALI 435
++ +EM K+ H V LI +R ++F + + T TYT LI
Sbjct: 339 AEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLI 398
Query: 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK--EKKSIQ 493
+F A D A ++K M G+HP + T+N+LL GL G V A + + +K+ ++
Sbjct: 399 HGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMK 458
Query: 494 ADALSKDAVPMEEKIC 509
D ++ M E +C
Sbjct: 459 LDIVT--YTTMIEALC 472
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 20/211 (9%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+E+ F +S+ RG + TYTT++ F +A+ + + VF+ M G++ D +TY
Sbjct: 372 VEEGMEVFREMSQ-RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN 430
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ L N G+V+ A+ ++E M+ ++ IV+YT ++ L +V++ D++ + +
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI------------ 213
G+ PN TYT +M R G EEA +F +M+E G P+ N LI
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550
Query: 214 -------EKCCKAGETRTIILILRYMKENRL 237
C AG+ T L+ + + RL
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNMLHDGRL 581
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 6/231 (2%)
Query: 11 ILKYSTWDSAQDLLKNL---PIKWDSYTVNQVLKT---HPPMEKAWLFFNWVSRSRGFNH 64
+ Y W A LL ++ I D N ++ + +A ++ + +S+
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D Y T++ F + KR+ VF M ++G+ + VTYT+++H A D D A ++
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 414
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
++M +P I++Y + L N V+ A V++ M +R + + TYT ++E L +A
Sbjct: 415 KQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
GK E+ ++F + GV+P+ ++ C+ G + MKE+
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKED 525
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/491 (20%), Positives = 193/491 (39%), Gaps = 54/491 (10%)
Query: 5 ISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSR--SRGF 62
+S + K+ K+ S + ++NL I + YT + + + L + + G+
Sbjct: 82 LSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGY 141
Query: 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122
T ++L+ F RIS + + M E G D VT+T+++H L AV
Sbjct: 142 GPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVA 201
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
+ E M +K C P +V+Y A + L A ++ +M + + + Y +++ L
Sbjct: 202 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC 261
Query: 183 RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242
+ ++A ++F+KM+ G++PD N LI C G R+ +RL
Sbjct: 262 KYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYG---------RWSDASRLL---- 308
Query: 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK 302
+D L ++P D V F L+ +K
Sbjct: 309 --------------SDMLEKNINP----------DLVFF------------NALIDAFVK 332
Query: 303 KKNLVAIDSLLSGIM-DKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT 361
+ LV + L ++ K D +T+I+ C ++R + + F + L
Sbjct: 333 EGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 392
Query: 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421
Y LI + + ++M G + +L+ L + A +F +
Sbjct: 393 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM 452
Query: 422 PE-DQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
+ D K TYT +I AG + ++ ++ KG+ P++ T+ +++G + G
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 512
Query: 480 SDAEIYRKEKK 490
+A+ E K
Sbjct: 513 EEADALFVEMK 523
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 94/434 (21%), Positives = 175/434 (40%), Gaps = 55/434 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G+ D T+TT++ + + S + E M KG D VTY +V++ L G+ D A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+N+ +M+ + +V Y + L + +A D++ +M +G+ P+ +TY L+
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA-- 238
L G++ +A + S M E + PD N LI+ K G+ + M +++
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 239 --LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGL 296
+ Y + +K +E +V + S + N TT I G
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEG----MEVFREMSQRGLVGNTVT--YTTLIHG-------- 400
Query: 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356
+ ++ + ++ + D + +++ C++ + AL+ FEY K D+
Sbjct: 401 ---FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM 457
Query: 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416
L+ Y +I E + KAG V G L L S + P
Sbjct: 458 KLDIVTYTTMI----------------EALCKAGK---VEDGWDLFCSL-SLKGVKPNV- 496
Query: 417 IFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL-AGLEK 475
TYT ++ + G ++A ++ M G P+ GT+N L+ A L
Sbjct: 497 ------------VTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 476 LGRVSDAEIYRKEK 489
+ AE+ ++ +
Sbjct: 545 GDEAASAELIKEMR 558
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/452 (21%), Positives = 181/452 (40%), Gaps = 57/452 (12%)
Query: 37 NQVLKTHPPMEKAWLFFNWVSRSRGF--NHDRFTYTTMLDIFGEAKRISSMKYVFELMQE 94
N++L M K L + R + ++D ++Y +++ F ++ V M +
Sbjct: 84 NKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMK 143
Query: 95 KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154
G D VT +S+++ + + AV + ++M + E P V++ + LFL+++ E
Sbjct: 144 LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASE 203
Query: 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
A + M+ RG P+ +TY ++ L + G + AL + KM++ ++ D +I+
Sbjct: 204 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 263
Query: 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF----KVADENDSLLWQVHPQFSP 270
C + + M + + ++ + +D + L + + +P
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 323
Query: 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIST 330
+ V F L+ +K+ LV + L ++ +SI D S+
Sbjct: 324 ------NVVTF------------SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365
Query: 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
+I C H R D A FE + D Y LI K + E+ EM++ G
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425
Query: 391 HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKI 450
+G+ T TY LI F AG D A KI
Sbjct: 426 -------------LVGN--------------------TVTYNTLIQGLFQAGDCDMAQKI 452
Query: 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+K M G+ P + T+++LL GL K G++ A
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 9/219 (4%)
Query: 11 ILKYSTWDSAQDLLKNL-------PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ + S ++ +K +E L+ + RS +
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS--ID 357
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
D FTY+++++ F R+ K++FELM K + VTY +++ A V+ + +
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+Y ++ LF A ++K+M+ G+PP+ TY++L++ L +
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
GK E+AL +F +Q++ ++PD NI+IE CKAG+
Sbjct: 478 YGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKV 516
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 103/178 (57%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
R N + T++ ++D F + ++ + +++ M ++ I+ D TY+S+++ +D
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A +++E M K+C+P +V+Y +K RV+E ++++EM QRGL N TY L++
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
L +AG + A +IF KM GV PD +IL++ CK G+ +++ Y++++++
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 91/168 (54%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY T++ F +AKR+ +F M ++G+ + VTY +++ L AGD D A I+++M
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
P I++Y+ + L ++++A V++ + + + P+ YTY +++E + +AGK
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKV 516
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
E+ ++F + GV+P+ +I C+ G + R MKE+
Sbjct: 517 EDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+E+ F +S+ RG + TY T++ +A + +F+ M G+ D +TY+
Sbjct: 411 VEEGMELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ L G ++ A+ ++E ++ + P I +Y ++ + +V++ D++ + +
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI------------ 213
G+ PN YT ++ R G EEA +F +M+E G P+ N LI
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589
Query: 214 -------EKCCKAGETRTIILILRYMKENRLALRY 241
C G+ TI +++ + + RL Y
Sbjct: 590 AELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 624
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/525 (18%), Positives = 205/525 (39%), Gaps = 54/525 (10%)
Query: 5 ISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSR--SRGF 62
+S + K+ K+ S + ++NL I +D Y+ N ++ + L + + G+
Sbjct: 87 LSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY 146
Query: 63 NHDRFTYTTMLDIFGEAKRISS----------MKY------------------------- 87
D T +++L+ + KRIS M+Y
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
+ + M +G D TY +V++ L GD+D A+++ ++M+ + +V YT + L
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
V +A +++ EM +G+ PN TY L+ L G++ +A + S M E + P+
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326
Query: 208 ACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267
+ LI+ K G+ + M + + + + F + D D
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
S + + + +++G+ L + G++ ++ ++ +
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR---------GLVGNTVTYNTLI 437
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
+CD ++ F+ V + + Y L+ L K K + E +
Sbjct: 438 QGLFQAGDCDMAQK-----IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSAD 445
K+ +Y ++I + A + +F L + YT +I + G +
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552
Query: 446 KALKIYKTMCRKGIHPSLGTFNVLL-AGLEKLGRVSDAEIYRKEK 489
+A +++ M G P+ GT+N L+ A L + + AE+ ++ +
Sbjct: 553 EADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMR 597
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/390 (20%), Positives = 162/390 (41%), Gaps = 35/390 (8%)
Query: 129 LKECYPTIVSYTAYMKI---LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185
L+ Y + SY K+ + L+ ++ +A D++ EM+Q P+ + L+ + +
Sbjct: 35 LRGVYFSAASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMN 94
Query: 186 KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE----------N 235
K++ + + +MQ + D + NILI C+ + + +L M + +
Sbjct: 95 KFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLS 154
Query: 236 RLALRYPVFKEALQTFKVADENDSLLWQ---------VHPQFSPEFISDNDAV--EFVTT 284
L Y K + + D+ + +Q +H F S+ A+ V
Sbjct: 155 SLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR 214
Query: 285 DIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGA 344
+ L +V L K+ ++ SLL + I+ D + +TII+ C+++ + A
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274
Query: 345 LLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404
L F + Y +LI L + + ++ +M + + V + LI
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334
Query: 405 LGSARRPVPAAKIF------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458
+ V A K++ S+ P+ TY++LI + D+A +++ M K
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPD----IFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 459 IHPSLGTFNVLLAGLEKLGRVSDA-EIYRK 487
P++ T+N L+ G K RV + E++R+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 36/174 (20%)
Query: 40 LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINI 99
L + +EKA + F ++ +S+ D +TY M++ +A ++ +F + KG+
Sbjct: 475 LCKYGKLEKALVVFEYLQKSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533
Query: 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVY 159
+ + YT+++ G LKE EA ++
Sbjct: 534 NVIIYTTMISGFCRKG-------------LKE----------------------EADALF 558
Query: 160 KEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213
+EM + G PN TY L+ +R G + E+ +M+ G D + +++I
Sbjct: 559 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI 612
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/490 (22%), Positives = 206/490 (42%), Gaps = 59/490 (12%)
Query: 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAV 102
H +++A F + +SR F ++ +L + K+ + E M+ G++ +
Sbjct: 43 HLKLDEAVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLY 101
Query: 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162
TY +++ L + A+ I +M P+IV+ + + +R+ EA + +M
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 163 IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
++ G P+ T+T L+ L + K EA+ + +M G QPD +I CK GE
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221
Query: 223 RTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQV-HPQFSPEFISD--- 275
+ +L M++ ++ + Y ++L ++ D+ +L ++ + P+ +
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281
Query: 276 ----------NDAVEFVTTDIEGPLSID----QGLVLILLKKKNLVAIDSLLSGIMDKSI 321
+DA ++ +E ++ + L+ K+ L+ + L ++ +SI
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341
Query: 322 QLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAE 381
+ +++I C H R D A F V D + Y LI N F K +
Sbjct: 342 DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI------NGFCKAKK 395
Query: 382 IVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSA 441
+V+ M + R S R V T TYT LI +F A
Sbjct: 396 VVDGME--------------LFRDMSRRGLVGN-------------TVTYTTLIHGFFQA 428
Query: 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK--EKKSIQADALSK 499
D A ++K M G+HP++ T+N LL GL K G++ A + + +K ++ D +
Sbjct: 429 SDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488
Query: 500 DAVPMEEKIC 509
+ M E +C
Sbjct: 489 NI--MSEGMC 496
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 102/193 (52%), Gaps = 1/193 (0%)
Query: 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAV 102
H +++A F + S+ D TY T+++ F +AK++ +F M +G+ + V
Sbjct: 358 HDRLDEAQQIFTLMV-SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416
Query: 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162
TYT+++H A D D A ++++M +P I++Y + L N ++++A V++ +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 163 IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
+ + P+ YTY ++ E + +AGK E+ ++F + GV+PD A N +I CK G
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 223 RTIILILRYMKEN 235
+ MKE+
Sbjct: 537 EEAYTLFIKMKED 549
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL---PIKWDSYTVNQVL----KTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ I + T N ++ K +E LF + RS +
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS--ID 342
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
+ TY ++++ F R+ + +F LM K D VTY ++++ A V + +
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ +M + V+YT + F A V+K+M+ G+ PN TY L++ L +
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK E+A+ +F +Q++ ++PD NI+ E CKAG+
Sbjct: 463 NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/436 (21%), Positives = 175/436 (40%), Gaps = 18/436 (4%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G+ D T+TT++ + + S + E M KG D VTY +V++ L G+ D A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+N+ +M+ + +V Y+ + L V +A +++ EM +G+ P+ +TY+ L+
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L G++ +A + S M E + P+ N LI+ K G+ + M + +
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+ + F + D D S + + D V T I G
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD---VVTYNTLING-----------F 390
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
K K +V L + + + ++ +T+I D A + F+ V ++
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
Y L+ L K K + E + K+ +Y ++ + A + +F
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510
Query: 421 LPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL-AGLEKLG 477
L + Y +I + G ++A ++ M G P GT+N L+ A L
Sbjct: 511 LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGD 570
Query: 478 RVSDAEIYRKEKKSIQ 493
+ + AE+ KE +S +
Sbjct: 571 KAASAELI-KEMRSCR 585
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 158/386 (40%), Gaps = 28/386 (7%)
Query: 129 LKECYPTIVSYTAYMKIL----FLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
L+ Y + +SY Y + L L+ ++ EA D++ EM++ P+ ++ L+ + +
Sbjct: 19 LRGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKM 78
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE---------- 234
K++ + KM+ GV + NI+I C+ + + IL M +
Sbjct: 79 KKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTL 138
Query: 235 NRLALRYPVFKEALQTFKVADENDSLLWQ---------VHPQFSPEFISDNDA-VEFVTT 284
N L + + + D+ + +Q VH F S+ A VE +
Sbjct: 139 NSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVV 198
Query: 285 DIEGPLSIDQGLVLILLKKKNLVAID-SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDG 343
P + G V+ L K+ + +LL+ + I+ D + ST+I+ C +R D
Sbjct: 199 KGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDD 258
Query: 344 ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403
AL F + + Y +LI L + + ++ +M + + V LI
Sbjct: 259 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLID 318
Query: 404 RLGSARRPVPAAKIFSLLPEDQ--KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461
+ + A K+F + + TY +LI + D+A +I+ M K P
Sbjct: 319 AFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378
Query: 462 SLGTFNVLLAGLEKLGRVSDA-EIYR 486
+ T+N L+ G K +V D E++R
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFR 404
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 16/179 (8%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G + + TY T+LD + ++ VFE +Q+ + D TY + + AG V+
Sbjct: 443 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVE 502
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+++ + LK P +++Y + +EA ++ +M + G P+ TY L+
Sbjct: 503 DGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLI 562
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+R G + E+ +M+ C AG+ T L+ + + RL
Sbjct: 563 RAHLRDGDKAASAELIKEMRS----------------CRFAGDASTYGLVTDMLHDGRL 605
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 86/195 (44%), Gaps = 9/195 (4%)
Query: 8 VYKILKYSTWDSAQDLLKNL---PIKWDSYTVNQVLK---THPPMEKAWLFFNWVSRSRG 61
++ + S D+AQ + K + + + T N +L + +EKA + F ++ +S+
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK- 480
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
D +TY M + +A ++ +F + KG+ D + Y +++ G + A
Sbjct: 481 MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAY 540
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
++ +MK P +Y ++ + + ++ KEM + TY ++ + L
Sbjct: 541 TLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 600
Query: 182 VRAGKYEEA-LEIFS 195
G+ ++ LE+ S
Sbjct: 601 -HDGRLDKGFLEVLS 614
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/477 (21%), Positives = 203/477 (42%), Gaps = 58/477 (12%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
M++A+ F V RG D Y+T++D + +A + +F KG+ +D V ++
Sbjct: 302 MDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFS 360
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
S + +GD+ A +++ M + P +V+YT +K L + R+ EA +Y ++++R
Sbjct: 361 STIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKR 420
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG----- 220
G+ P+ TY+ L++ + G ++ M + G PD +L++ K G
Sbjct: 421 GMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHA 480
Query: 221 ETRTIILILRYMKENRLAL--------RYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272
++ ++ + ++ N + R F EAL+ F++ ++ + P
Sbjct: 481 MRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMG-----IYGIKP------ 529
Query: 273 ISDNDAVEFVT----TDIEGPLSIDQGLVLILLKKKNLVAIDSL---------------- 312
D F T + +EG L ++ L L K + D+L
Sbjct: 530 ----DVATFTTVMRVSIMEGRL--EEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPT 583
Query: 313 ----LSGIMDKS-IQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALI 367
L +M ++ I D AV + +I + R + A F ++ + + Y +I
Sbjct: 584 IGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMI 643
Query: 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPE--DQ 425
L + I E + +LIH L A ++FS++ E +
Sbjct: 644 CGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSK 703
Query: 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
TY L+ + + + + K+++ M KGI PS+ ++++++ GL K GRV +A
Sbjct: 704 PNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA 760
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 6/218 (2%)
Query: 22 DLLKNLPIKWDSYTVNQVL----KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFG 77
DL++ I D N V+ K H +E A FFN + + D TY TM+ +
Sbjct: 590 DLMQRNKISADIAVCNVVIHLLFKCHR-IEDASKFFNNLIEGK-MEPDIVTYNTMICGYC 647
Query: 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIV 137
+R+ + +FEL++ + VT T ++H L D+DGA+ ++ M K P V
Sbjct: 648 SLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAV 707
Query: 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKM 197
+Y M + ++ + +++EM ++G+ P+ +Y+++++ L + G+ +EA IF +
Sbjct: 708 TYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQA 767
Query: 198 QEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
+A + PD A ILI CK G L+ +M N
Sbjct: 768 IDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRN 805
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%)
Query: 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121
F + T T ++ + + + +F +M EKG +AVTY +M W S + D++G+
Sbjct: 667 FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSF 726
Query: 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181
++EEM+ K P+IVSY+ + L RV EAT+++ + I L P+ Y +L+
Sbjct: 727 KLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGY 786
Query: 182 VRAGKYEEALEIFSKMQEAGVQPD 205
+ G+ EA ++ M GV+PD
Sbjct: 787 CKVGRLVEAALLYEHMLRNGVKPD 810
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 189/414 (45%), Gaps = 24/414 (5%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
T+ T+++ F + + +F++M+++GI D + Y++++ AG + ++ +
Sbjct: 288 TFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQA 347
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
K +V +++ + + + + A+ VYK M+ +G+ PN TYT+L++ L + G+
Sbjct: 348 LHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRI 407
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEA 247
EA ++ ++ + G++P + LI+ CK G R+ + E+ + + YP +
Sbjct: 408 YEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALY----EDMIKMGYP--PDV 461
Query: 248 LQTFKVADENDSLLWQVHP-QFSPEFISDNDAVEFVTTD--IEGPLSIDQGLVLILLKKK 304
+ + D +H +FS + + + + V + I+G +++ LK
Sbjct: 462 VIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNR--FDEALKVF 519
Query: 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYL 364
L+ I I+ D A +T++ V+ R + AL F KM L + AY
Sbjct: 520 RLMGI---------YGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYC 570
Query: 365 ALIGILIKLNTFPKVA-EIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPE 423
LI K + P + ++ + M + S + + ++IH L R A+K F+ L E
Sbjct: 571 TLIDAFCK-HMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIE 629
Query: 424 D--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475
+ TY +I Y S D+A +I++ + P+ T +L+ L K
Sbjct: 630 GKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCK 683
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 22 DLLKNLPIKWDSYTVN---QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78
+LLK P ++ T+ VL + M+ A F+ ++ +G + TY ++D F +
Sbjct: 660 ELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAE-KGSKPNAVTYGCLMDWFSK 718
Query: 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS 138
+ I +FE MQEKGI+ V+Y+ ++ L G VD A NI+ + + P +V+
Sbjct: 719 SVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVA 778
Query: 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
Y ++ R+ EA +Y+ M++ G+ P+ L EY
Sbjct: 779 YAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALSEY 820
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/421 (19%), Positives = 167/421 (39%), Gaps = 32/421 (7%)
Query: 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN 149
L+ E+G + V+ V+ LS ++ A + + P +V++ +
Sbjct: 241 RLVMERGFRVGIVSCNKVLKGLS-VDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKR 299
Query: 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC 209
+ A D++K M QRG+ P+ Y+ L++ +AG ++FS+ GV+ D
Sbjct: 300 GEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVF 359
Query: 210 NILIEKCCKAGETRTIILILRYMKENRLA---LRYPVFKEALQTFKVADENDSLLWQVHP 266
+ I+ K+G+ T ++ + M ++ + Y + + L E + Q+
Sbjct: 360 SSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILK 419
Query: 267 Q-FSPEFISDNDAV----------------EFVTTDIEGPLSIDQGLVLILLKKKNLVAI 309
+ P ++ + + E + P + G+++ L K+ L+
Sbjct: 420 RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLH 479
Query: 310 DSLLS-GIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFE----YSVKMDLNLERTAYL 364
S ++ +SI+L+ V +++I+ C R D AL F Y +K D+ +
Sbjct: 480 AMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDV----ATFT 535
Query: 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424
++ + I + + M K G LI +P ++F L+ +
Sbjct: 536 TVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRN 595
Query: 425 QKCT--ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+ A +I + F + A K + + + P + T+N ++ G L R+ +A
Sbjct: 596 KISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEA 655
Query: 483 E 483
E
Sbjct: 656 E 656
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/428 (22%), Positives = 178/428 (41%), Gaps = 55/428 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G +H+ +TY +++ F R+S + M + G D VT S+++ + + A
Sbjct: 108 GISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 167
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
V + ++M P V++T + LFL+++ EA + M+QRG P+ TY ++
Sbjct: 168 VALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNG 227
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL--- 237
L + G + AL + +KM+ A ++ + + +I+ CK + + M+ +
Sbjct: 228 LCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 287
Query: 238 ALRYPVFKEALQTF-KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGL 296
+ Y L + + +D + L + + +P ++ + L
Sbjct: 288 VITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFS------------------AL 329
Query: 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356
+ +KK LV + L ++ +SI + S++I C R A E ++ D
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Query: 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416
Y LI K K E+ EM++ G +G+
Sbjct: 390 LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRG-------------LVGN--------- 427
Query: 417 IFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL 476
T TYT LI +F A D A ++K M G+HP++ T+N+LL GL K
Sbjct: 428 -----------TVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476
Query: 477 GRVSDAEI 484
G+++ A +
Sbjct: 477 GKLAKAMV 484
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 11 ILKYSTWDSAQDLLKNL-------PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFN 63
+ Y W A LL ++ + S ++ +K ++ L+ + RS +
Sbjct: 298 LCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRS--ID 355
Query: 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123
+ FTY+++++ F R+ K + ELM K + VTY ++++ A VD + +
Sbjct: 356 PNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMEL 415
Query: 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183
+ EM + V+YT + F A V+K+M+ G+ PN TY +L++ L +
Sbjct: 416 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 475
Query: 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GK +A+ +F +Q + ++PD NI+IE CKAG+
Sbjct: 476 NGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 92/178 (51%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
R N + T++ ++D F + ++ + ++E M ++ I+ + TY+S+++ +
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGE 376
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A + E M K+C P +V+Y + RV + ++++EM QRGL N TYT L+
Sbjct: 377 AKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIH 436
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+A + A +F +M GV P+ NIL++ CK G+ +++ Y++ + +
Sbjct: 437 GFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 494
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/469 (19%), Positives = 187/469 (39%), Gaps = 63/469 (13%)
Query: 33 SYTVNQVLKTHPP---MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF 89
SY +VL+T ++ A F +++SR F ++ +L + + +
Sbjct: 43 SYDYREVLRTGLSDIELDDAIGLFGVMAQSRPF-PSIIEFSKLLSAIAKMNKFDLVISFG 101
Query: 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN 149
E M+ GI+ + TY +++ + A+ + +M P IV+ + +
Sbjct: 102 EKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHG 161
Query: 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC 209
+R+ +A + +M++ G P+ T+T L+ L K EA+ + +M + G QPD
Sbjct: 162 NRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTY 221
Query: 210 NILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFS 269
++ CK G+T + +L M+ ++ ++ + DSL H
Sbjct: 222 GAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVI---------DSLCKYRH---- 268
Query: 270 PEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS 329
++DA+ +L + + +K ++ + S
Sbjct: 269 -----EDDAL-------------------------------NLFTEMENKGVRPNVITYS 292
Query: 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389
++I C++ R A ++ +N + ALI +K K ++ EEM K
Sbjct: 293 SLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKR 352
Query: 390 GHSLGVYL------GALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGS 443
++ G ++ RLG A++ + LP TY LI + A
Sbjct: 353 SIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPN----VVTYNTLINGFCKAKR 408
Query: 444 ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492
DK +++++ M ++G+ + T+ L+ G + +A++ K+ S+
Sbjct: 409 VDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 457
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 72/121 (59%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY T+++ F +AKR+ +F M ++G+ + VTYT+++H A D D A ++++M
Sbjct: 395 TYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 454
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+P I++Y + L N ++ +A V++ + + + P+ YTY +++E + +AGK+
Sbjct: 455 VSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514
Query: 188 E 188
+
Sbjct: 515 K 515
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/432 (21%), Positives = 176/432 (40%), Gaps = 23/432 (5%)
Query: 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126
FTY M+D + + + + +FE M+ +G+ D VTY S++ G +D V +EE
Sbjct: 263 FTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEE 322
Query: 127 MKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186
MK C P +++Y A + ++ + Y+EM GL PN +Y+ L++ + G
Sbjct: 323 MKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 382
Query: 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL---ALRYPV 243
++A++ + M+ G+ P++ LI+ CK G + M + + + Y
Sbjct: 383 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 442
Query: 244 FKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKK 303
+ L + E + L ++ T + L+ L+ +K
Sbjct: 443 LIDGLCDAERMKEAEELFGKMD-----------------TAGVIPNLASYNALIHGFVKA 485
Query: 304 KNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY 363
KN+ LL+ + + I+ D + T I C + + A + + + Y
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545
Query: 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPE 423
L+ K + +++EM + + V +LI L + A F+ +
Sbjct: 546 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 605
Query: 424 D---QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
D Q A +TA+I + A +++ M +KG+ P + L+ G K G V
Sbjct: 606 DFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVL 665
Query: 481 DAEIYRKEKKSI 492
+A R + I
Sbjct: 666 EALALRDKMAEI 677
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 160/395 (40%), Gaps = 61/395 (15%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+ RG D TY +M+D FG+ R+ FE M++ D +TY ++++ G +
Sbjct: 289 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKL 348
Query: 118 DGAVNIWEEMKLKECYPTIVSYTA--------------------------------YMKI 145
+ + EMK P +VSY+ Y +
Sbjct: 349 PIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408
Query: 146 LFLNDRVKEATDVYK---EMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGV 202
+ N ++ +D ++ EM+Q G+ N TYT L++ L A + +EA E+F KM AGV
Sbjct: 409 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV 468
Query: 203 QPDKAACNILIEKCCKAGETRTIILILRYMKENRLA---LRYPVF------KEALQTFKV 253
P+ A+ N LI KA + +L +K + L Y F E ++ KV
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 528
Query: 254 --------ADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL----- 300
+ +SL++ F S N D L I+ +V
Sbjct: 529 VMNEMKECGIKANSLIYTT--LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 586
Query: 301 LKKKNLV--AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358
L K LV A+D D +Q ++A+ + +I+ C + + A FE V+ L
Sbjct: 587 LCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646
Query: 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393
+RTAY +L+ K + + ++M + G L
Sbjct: 647 DRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 681
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 162/391 (41%), Gaps = 32/391 (8%)
Query: 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164
++H + G D +++M PT+ +Y + + V+ A +++EM
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 290
Query: 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224
RGL P+ TY +++ + G+ ++ + F +M++ +PD N LI CK G+
Sbjct: 291 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 350
Query: 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTT 284
+ R MK N L + + F + ++ Q + +F D V V
Sbjct: 351 GLEFYREMKGNGLKPNVVSYSTLVDAFC----KEGMMQQ-----AIKFYVDMRRVGLVPN 401
Query: 285 DIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGA 344
+ ID K NL L + ++ ++ + + +I+ CD R A
Sbjct: 402 EYTYTSLIDAN-----CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 345 LLAFEYSVKMDL-----NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399
F KMD NL +Y ALI +K + E++ E+ G + L
Sbjct: 457 EELFG---KMDTAGVIPNL--ASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511
Query: 400 LLIHRLGSARRPVPAAKIFSLLPEDQKC-----TATYTALIGVYFSAGSADKALKIYKTM 454
I L S + + AAK+ ++ E ++C + YT L+ YF +G+ + L + M
Sbjct: 512 TFIWGLCSLEK-IEAAKV--VMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 568
Query: 455 CRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485
I ++ TF VL+ GL K VS A Y
Sbjct: 569 KELDIEVTVVTFCVLIDGLCKNKLVSKAVDY 599
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/481 (20%), Positives = 181/481 (37%), Gaps = 78/481 (16%)
Query: 40 LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINI 99
LK P + A+ FF W GF H +Y + I A+ V + M +
Sbjct: 118 LKEDPKL--AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADC 175
Query: 100 DAV---------------TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144
D + ++ L + G ++ A+ + +MK +P S +
Sbjct: 176 DVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLH 235
Query: 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204
+ + +K+MI G P +TY ++++ + + G E A +F +M+ G+ P
Sbjct: 236 RFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVP 295
Query: 205 DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQV 264
D N +I+ K G + MK+ + E D + +
Sbjct: 296 DTVTYNSMIDGFGKVGRLDDTVCFFEEMKD------------------MCCEPDVITYNA 337
Query: 265 HPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLD 324
+F +EF +++G GL K N+V+ +L+ + +
Sbjct: 338 LINCFCKFGKLPIGLEFY-REMKG-----NGL------KPNVVSYSTLVDAFCKEGM--- 382
Query: 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384
+ I+ D RR L+ EY+ Y +LI K+ +
Sbjct: 383 ---MQQAIKFYVDMRRV--GLVPNEYT-----------YTSLIDANCKIGNLSDAFRLGN 426
Query: 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF------SLLPEDQKCTATYTALIGVY 438
EM + G V LI L A R A ++F ++P A+Y ALI +
Sbjct: 427 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN----LASYNALIHGF 482
Query: 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK--SIQADA 496
A + D+AL++ + +GI P L + + GL L ++ A++ E K I+A++
Sbjct: 483 VKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542
Query: 497 L 497
L
Sbjct: 543 L 543
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 1/171 (0%)
Query: 68 TYTTMLDIFGEAKRIS-SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126
T+ ++D + K +S ++ Y + + G+ +A +T+++ L V+ A ++E+
Sbjct: 579 TFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQ 638
Query: 127 MKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186
M K P +YT+ M F V EA + +M + G+ + YT L+ L +
Sbjct: 639 MVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQ 698
Query: 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
++A +M G+ PD+ C +++K + G + + Y+ +++L
Sbjct: 699 LQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQL 749
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 75/150 (50%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+ KA +FN +S G + +T M+D + ++ + +FE M +KG+ D YT
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
S+M G+V A+ + ++M +++YT+ + L +++++A +EMI
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFS 195
G+ P+ +++ G +EA+E+ S
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEAVELQS 742
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF-SLLPE 423
AL +LI L + + +M + L+HR + + F ++
Sbjct: 197 ALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGA 256
Query: 424 DQKCTA-TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+ T TY +I G + A +++ M +G+ P T+N ++ G K+GR+ D
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316
Query: 483 EIYRKEKKSI--QADALSKDAV 502
+ +E K + + D ++ +A+
Sbjct: 317 VCFFEEMKDMCCEPDVITYNAL 338
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 113/465 (24%), Positives = 207/465 (44%), Gaps = 43/465 (9%)
Query: 32 DSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYV 88
D ++ N V++ +EKA N + S G + T+ ++D F +A ++
Sbjct: 176 DVFSYNTVIRGFCEGKELEKALELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEAMGF 234
Query: 89 FELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148
+ M+ G+ D V YTS++ + G++D +++E+ + P ++Y ++
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294
Query: 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAA 208
++KEA+++++ MI+RG+ PN YTYT L++ L GK +EAL++ + M E +P+
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Query: 209 CNILIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQVH 265
NI+I K CK G + I+ MK+ R + Y + L DE LL+ +
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414
Query: 266 PQFS---PEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK---------NLVAIDSLL 313
S P+ IS N + + + ++D + LL +K N++ +L
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQALD---IYDLLVEKLGAGDRVTTNILLNSTLK 471
Query: 314 SGIMDKSIQL-----DSAVI--STIIEVNCDHRRRDGAL-LAFEYSVKM---DLNLERTA 362
+G ++K+++L DS ++ S D + G L +A KM +L
Sbjct: 472 AGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFD 531
Query: 363 YLALIGILIKLNTFPKVAEIVEEMTKAGH-----SLGVYL-GALLIHRLGSARRPVPAAK 416
Y L+ L K + + + EEM + + S + + G+L + SA +
Sbjct: 532 YNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMS 591
Query: 417 IFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461
L P+ TY+ LI + G D+A+ + M G P
Sbjct: 592 RAGLSPD----LFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEP 632
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 85/172 (49%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TYT M+D F + ++ K + M+ + Y ++ L G +D A ++EEM
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+ +P +VS+ + +K A + M + GL P+ +TY+ L+ ++ G
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+EA+ F KM ++G +PD C+ +++ C GET + +++ + + + L
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVL 667
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/484 (21%), Positives = 193/484 (39%), Gaps = 43/484 (8%)
Query: 35 TVNQVLKTHPPMEKAWLFFNWVSR--SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL- 91
+++ +L+ + M K F ++ RGF + + + +L G + + K V L
Sbjct: 109 SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLK--GLCRNLECGKAVSLLR 166
Query: 92 -MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND 150
M+ + D +Y +V+ +++ A+ + EMK C ++V++ +
Sbjct: 167 EMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAG 226
Query: 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
++ EA KEM GL + YT L+ G+ + +F ++ E G P N
Sbjct: 227 KMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYN 286
Query: 211 ILIEKCCKAGETRTIILILRYMKENRLALRYPVF---------------KEALQTFKVAD 255
LI CK G+ + I +M E +R V+ KEALQ +
Sbjct: 287 TLIRGFCKLGQLKEASEIFEFMIER--GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMI 344
Query: 256 END----SLLWQ--VHPQFSPEFISDN-DAVEFVTTDIEGPLSIDQGLVL-ILLKKKNLV 307
E D ++ + ++ ++D + VE + P +I ++L L K +L
Sbjct: 345 EKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLD 404
Query: 308 AIDSLLSGIMDKSIQLDSAVIS--TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLA 365
LL ++ S D VIS +I C R AL ++ V+ +R
Sbjct: 405 EASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNI 464
Query: 366 LIGILIKLNTFPKVAEIVEEM--TKAGHSLGVYL----GALLIHRLGSARRPVPAAKIFS 419
L+ +K K E+ +++ +K + Y G L A+ + ++
Sbjct: 465 LLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSE 524
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
L P Y L+ GS D+A ++++ M R P + +FN+++ G K G +
Sbjct: 525 LQPS----VFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDI 580
Query: 480 SDAE 483
AE
Sbjct: 581 KSAE 584
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/403 (21%), Positives = 157/403 (38%), Gaps = 64/403 (15%)
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
VF+ + G ++ A ++M L + + + A + + +M + + VS + ++
Sbjct: 60 VFQQAVDSGSSL-AFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYV 118
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
+ A V M++RG N Y + +L++ L R + +A+ + +M+ + PD
Sbjct: 119 QMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVF 178
Query: 208 ACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267
+ N +I C+ E + + MK + + + + F A + D +
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMG----- 233
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
F+ + ++F+ GL + +LV SL+ G D
Sbjct: 234 ----FLKE---MKFM------------GL------EADLVVYTSLIRGFCD--------- 259
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER------TAYLALIGILIKLNTFPKVAE 381
C R AL D LER Y LI KL + +E
Sbjct: 260 --------CGELDRGKALF--------DEVLERGDSPCAITYNTLIRGFCKLGQLKEASE 303
Query: 382 IVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPE-DQKCTA-TYTALIGVYF 439
I E M + G VY LI L + A ++ +L+ E D++ A TY +I
Sbjct: 304 IFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLC 363
Query: 440 SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
G A++I + M ++ P T+N+LL GL G + +A
Sbjct: 364 KDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEA 406
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/190 (17%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 28 PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKY 87
P +D + L +++AW F + R F D ++ M+D +A I S +
Sbjct: 527 PSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKSAES 585
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
+ M G++ D TY+ +++ ++K+ +
Sbjct: 586 LLVGMSRAGLSPDLFTYSKLIN-------------------------------RFLKLGY 614
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
L+ EA + +M+ G P+ + +++Y + G+ ++ E+ K+ + + DK
Sbjct: 615 LD----EAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKE 670
Query: 208 -ACNILIEKC 216
C ++ C
Sbjct: 671 LTCTVMDYMC 680
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 153/398 (38%), Gaps = 51/398 (12%)
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
VF E G+ + +Y V+H++ G + A ++ M+LK P ++SY+ +
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
+ + + + M ++GL PN Y Y ++ L R K EA E FS+M G+ PD
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 208 ACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267
LI+ CK G+ R +++H +
Sbjct: 353 VYTTLIDGFCKRGDIRAA--------------------------------SKFFYEMHSR 380
Query: 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327
+T D+ +I G I ++V L + K ++ DS
Sbjct: 381 -------------DITPDVLTYTAIISGFCQI----GDMVEAGKLFHEMFCKGLEPDSVT 423
Query: 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387
+ +I C A + ++ + Y LI L K E++ EM
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483
Query: 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSAD 445
K G ++ +++ L + A K+ T TYT L+ Y +G D
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 543
Query: 446 KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
KA +I K M KG+ P++ TFNVL+ G G + D E
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 138/342 (40%), Gaps = 22/342 (6%)
Query: 53 FNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS 112
F + SR D TYT ++ F + + +F M KG+ D+VT+T +++
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432
Query: 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCY 172
AG + A + M C P +V+YT + L + A ++ EM + GL PN +
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492
Query: 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232
TY ++ L ++G EEA+++ + + AG+ D L++ CK+GE IL+ M
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552
Query: 233 KENRLALRYPVFKEALQTF----KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288
L F + F + D L W + +P + N
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN------------ 600
Query: 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAF 348
LV + NL A ++ + + + D +++ +C R A F
Sbjct: 601 ------SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654
Query: 349 EYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
+ ++ + Y LI +K F + E+ ++M + G
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/432 (22%), Positives = 174/432 (40%), Gaps = 28/432 (6%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
+Y ++ + RI ++ LM+ KG D ++Y++V++ G++D + E M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
K K P Y + + +L ++ EA + + EMI++G+ P+ YT L++ + G
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEA 247
A + F +M + PD +I C+ G+ + M L F E
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 248 LQTF-KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNL 306
+ + K D+ ++VH S N V TT I+G L K+ +L
Sbjct: 428 INGYCKAGHMKDA--FRVHNHMIQAGCSPN--VVTYTTLIDG-----------LCKEGDL 472
Query: 307 VAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGAL-LAFEYSVKMDLNLERTAYLA 365
+ + LL + +Q + ++I+ C + A+ L E+ LN + Y
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA-GLNADTVTYTT 531
Query: 366 LIGILIKLNTFPKVAEIVEEMTKAGH-----SLGVYLGALLIH-RLGSARRPVPAAKIFS 419
L+ K K EI++EM G + V + +H L + +
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591
Query: 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
+ P T+ +L+ Y + A IYK MC +G+ P T+ L+ G K +
Sbjct: 592 IAPN----ATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 480 SDAEIYRKEKKS 491
+A +E K
Sbjct: 648 KEAWFLFQEMKG 659
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
++K W V + +G + + Y +++ + +++ + F M +GI D V YT
Sbjct: 297 LDKVWKLIE-VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYT 355
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
+++ GD+ A + EM ++ P +++YTA + + EA ++ EM +
Sbjct: 356 TLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK 415
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
GL P+ T+T L+ +AG ++A + + M +AG P+ LI+ CK G+
Sbjct: 416 GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 123/320 (38%), Gaps = 33/320 (10%)
Query: 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK-AGETRTIILILRYM 232
+ V + LV G EA +F KM G+ +CN+ + + K +T T I++ R
Sbjct: 178 FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREF 237
Query: 233 KEN----RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288
E +A V Q ++ + + LL ++P+ IS +T + G
Sbjct: 238 PEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVIS-------YSTVVNG 290
Query: 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAF 348
+ L + L+ + K ++ +S + +II + C + A AF
Sbjct: 291 YCRFGE-----------LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAF 339
Query: 349 EYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408
++ + + Y LI K ++ EM + V +I
Sbjct: 340 SEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 399
Query: 409 RRPVPAAKIF------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS 462
V A K+F L P+ + T+T LI Y AG A +++ M + G P+
Sbjct: 400 GDMVEAGKLFHEMFCKGLEPD----SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
Query: 463 LGTFNVLLAGLEKLGRVSDA 482
+ T+ L+ GL K G + A
Sbjct: 456 VVTYTTLIDGLCKEGDLDSA 475
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 85/194 (43%), Gaps = 24/194 (12%)
Query: 18 DSAQDLLKNL---PIKWDSYTVNQVLKT---HPPMEKAWLFFNWVSRSRGFNHDRFTYTT 71
D AQ++LK + ++ T N ++ H +E NW+ ++G + T+ +
Sbjct: 543 DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM-LAKGIAPNATTFNS 601
Query: 72 MLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131
++ + + + +++ M +G+ D TY +++ A ++ A +++EMK K
Sbjct: 602 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Query: 132 CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191
++ +Y+ +K + EA +V+ +M + GL + +E
Sbjct: 662 FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD-----------------KEIF 704
Query: 192 EIFSKMQEAGVQPD 205
+ FS + G +PD
Sbjct: 705 DFFSDTKYKGKRPD 718
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 177/454 (38%), Gaps = 60/454 (13%)
Query: 36 VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK 95
V V+K KA FN + + GF H TY ++++ G + +M+ V M+E
Sbjct: 10 VTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMREN 69
Query: 96 -GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154
G ++ Y M G V AVN++E M +C PT+ SY A M +L + +
Sbjct: 70 VGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQ 129
Query: 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
A VY M RG+ P+ Y++T+ M+ + + AL + + M G + + ++
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMN------VVA 183
Query: 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFIS 274
C G + +EN A Y +F + L
Sbjct: 184 YCTVVG---------GFYEENFKAEGYELFGKML-------------------------- 208
Query: 275 DNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV 334
+ + LS L+ +L KK ++ + LL ++ + + + + I+
Sbjct: 209 --------ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQG 260
Query: 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394
C DGA+ ++ + Y LI L K + F + + +M G
Sbjct: 261 LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPD 320
Query: 395 VYLGALLI------HRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKAL 448
Y LI + A R V A +P+ TY +LI G ++AL
Sbjct: 321 SYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQ----FTYRSLIDGLCHEGETNRAL 376
Query: 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
++ KGI P++ +N L+ GL G + +A
Sbjct: 377 ALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 15/285 (5%)
Query: 8 VYKILKYSTWDSAQDLLK---NLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRS--RGF 62
+Y + K S + A+ L N ++ DSYT N ++ + L V + GF
Sbjct: 293 IYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGF 352
Query: 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122
D+FTY +++D + +F KGI + + Y +++ LSN G + A
Sbjct: 353 VPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQ 412
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
+ EM K P + ++ + L V +A + K MI +G P+ +T+ +L+
Sbjct: 413 LANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472
Query: 183 RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA---L 239
K E ALEI M + GV PD N L+ CK + ++ + M E A
Sbjct: 473 TQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLF 532
Query: 240 RYPVFKEALQTFKVADENDSLLWQV-HPQFSPEFISDNDAVEFVT 283
+ + E+L ++ DE LL ++ + +P DAV F T
Sbjct: 533 TFNILLESLCRYRKLDEALGLLEEMKNKSVNP------DAVTFGT 571
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
T+ +++ + +S + ++M KG D T+ ++H S ++ A+ I + M
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
P + +Y + + L + ++ + YK M+++G PN +T+ +L+E L R K
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
+EAL + +M+ V PD LI+ CK G+ + R M+E
Sbjct: 548 DEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S+G+ D FT+ ++ + ++ + + ++M + G++ D TY S+++ L +
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+ ++ M K C P + ++ ++ L ++ EA + +EM + + P+ T+ L+
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLI 573
Query: 179 EYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIE 214
+ + G + A +F KM+EA V NI+I
Sbjct: 574 DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIH 610
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 95/465 (20%), Positives = 176/465 (37%), Gaps = 43/465 (9%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G D TY ++ + + + M +G+ D+ TY +++ G V
Sbjct: 280 QGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQL 339
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A I + P +Y + + L A ++ E + +G+ PN Y L++
Sbjct: 340 AERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIK 399
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
L G EA ++ ++M E G+ P+ NIL+ CK G +++ M +
Sbjct: 400 GLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVM------I 453
Query: 240 RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID----QG 295
F + TF + L+ Q E +A+E + ++ + D
Sbjct: 454 SKGYFPDIF-TFNI------LIHGYSTQLKME-----NALEILDVMLDNGVDPDVYTYNS 501
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD 355
L+ L K + +++K + + ++E C +R+ D AL E
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561
Query: 356 LNLERTAYLALIGILIK---LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPV 412
+N + + LI K L+ + +EE K S Y ++IH
Sbjct: 562 VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY--NIIIHAFTEKLNVT 619
Query: 413 PAAKIFSLLPEDQKCTA----TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468
A K+F + + +C TY ++ + G+ + K M G PSL T
Sbjct: 620 MAEKLFQEMVD--RCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGR 677
Query: 469 LLAGLEKLGRVSDAE--IYRKEKKSIQADALSKDAVPMEEKICDL 511
++ L RV +A I+R +K + +A++ ICD+
Sbjct: 678 VINCLCVEDRVYEAAGIIHRMVQKGLVPEAVN--------TICDV 714
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%)
Query: 11 ILKYSTWDSAQDLL---KNLPIKWDSYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNH 64
+ +Y D A LL KN + D+ T ++ + ++ A+ F + + +
Sbjct: 541 LCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSS 600
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
TY ++ F E ++ + +F+ M ++ + D TY ++ G+V+
Sbjct: 601 STPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFL 660
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169
EM P++ + + L + DRV EA + M+Q+GL P
Sbjct: 661 LEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 5/208 (2%)
Query: 32 DSYTVNQVL---KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYV 88
D +T N ++ T ME A + V G + D +TY ++L+ + + +
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILD-VMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518
Query: 89 FELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148
++ M EKG + T+ ++ L +D A+ + EEMK K P V++ +
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCK 578
Query: 149 NDRVKEATDVYKEMIQR-GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
N + A ++++M + + + TY +++ A ++F +M + + PD
Sbjct: 579 NGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638
Query: 208 ACNILIEKCCKAGETRTIILILRYMKEN 235
++++ CK G L M EN
Sbjct: 639 TYRLMVDGFCKTGNVNLGYKFLLEMMEN 666
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 10/174 (5%)
Query: 318 DKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377
D+ I D + ++ C R AL + AY ++G + N
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198
Query: 378 KVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF------SLLPEDQKCTATY 431
+ E+ +M +G SL + L+ L K+ +LP TY
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPN----LFTY 254
Query: 432 TALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485
I G D A+++ + +G P + T+N L+ GL K + +AE+Y
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/462 (20%), Positives = 189/462 (40%), Gaps = 39/462 (8%)
Query: 44 PPMEKAWLFFNWVSRSRGFN---------------HDRFTYTTMLDIFGEAKRISSMKYV 88
P + FF+ ++R++ FN H+ +T M++ F + V
Sbjct: 86 PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145
Query: 89 FELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148
+ + G D T+ +++ L G V AV + + M C P +V+Y + + +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAA 208
+ A D+ ++M +R + + +TY+ +++ L R G + A+ +F +M+ G++
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 209 CNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF----KVADENDSLLWQV 264
N L+ CKAG+ L+L+ M + F L F K+ + N+ +
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 265 HPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLD 324
SP I+ N ++ G + + L +++L ++ D
Sbjct: 326 TRGISPNIITYNTLMD--------------GYCM----QNRLSEANNMLDLMVRNKCSPD 367
Query: 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384
+++I+ C +R D + F K L Y L+ + E+ +
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK--CTATYTALIGVYFSAG 442
EM G V +L+ L + A +IF L + + YT +I G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 443 SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484
+ A ++ ++ KG+ P++ T+ V+++GL K G +S+A I
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/462 (22%), Positives = 196/462 (42%), Gaps = 63/462 (13%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G D TY ++++ + S + M+E+ + D TY++++ L G +D A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+++++EM+ K ++V+Y + ++ L + + + K+M+ R + PN T+ VL++
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
V+ GK +EA E++ +M G+ P+ N L++ Y +NRL
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDG---------------YCMQNRL--- 349
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPL---SIDQGL- 296
++ N+ L V + SP+ ++ T+ I+G +D G+
Sbjct: 350 -------------SEANNMLDLMVRNKCSPDIVT-------FTSLIKGYCMVKRVDDGMK 389
Query: 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356
V + K+ LVA ++ S +++ C + A F+ V +
Sbjct: 390 VFRNISKRGLVA---------------NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434
Query: 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416
+ Y L+ L K EI E++ K+ LG+ + +I + + A
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494
Query: 417 IFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474
+F LP + TYT +I GS +A + + M G P+ T+N L+
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554
Query: 475 KLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516
+ G ++ + +E KS S DA ++ I D+L G+
Sbjct: 555 RDGDLTASAKLIEEMKSC---GFSADASSIKMVI-DMLLSGE 592
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 94/181 (51%), Gaps = 1/181 (0%)
Query: 53 FNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS 112
F +S+ RG + TY+ ++ F ++ +I + +F+ M G+ D +TY ++ L
Sbjct: 391 FRNISK-RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449
Query: 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCY 172
+ G ++ A+ I+E+++ + IV YT ++ + +V++A +++ + +G+ PN
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509
Query: 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232
TYTV++ L + G EA + KM+E G P+ N LI + G+ ++ M
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
Query: 233 K 233
K
Sbjct: 570 K 570
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 76/156 (48%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G D TY +LD + ++ +FE +Q+ +++ V YT+++ + G V+
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A N++ + K P +++YT + L + EA + ++M + G PN TY L+
Sbjct: 491 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLI 550
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
+R G + ++ +M+ G D ++ ++I+
Sbjct: 551 RAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/390 (20%), Positives = 159/390 (40%), Gaps = 60/390 (15%)
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
D A+ +++EM P++V ++ + + + D K++ G+ N YT ++
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+ R K A + K+ + G +PD N LI+ G+ ++++ M EN
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189
Query: 238 ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLV 297
P+ ++ N V + + L++D +
Sbjct: 190 -------------------------------QPDVVTYNSIVNGICRSGDTSLALD---L 215
Query: 298 LILLKKKNLVA--------IDSLL-SGIMDKSIQL-----DSAVISTIIEVN------CD 337
L ++++N+ A IDSL G +D +I L + S+++ N C
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275
Query: 338 HRR-RDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVY 396
+ DGALL + V ++ + L+ + +K + E+ +EM G S +
Sbjct: 276 AGKWNDGALL-LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 397 LGALLIHRLGSARRPVPAAKIFSLLPEDQKCT---ATYTALIGVYFSAGSADKALKIYKT 453
L+ R A + L+ + KC+ T+T+LI Y D +K+++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393
Query: 454 MCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
+ ++G+ + T+++L+ G + G++ AE
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAE 423
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/416 (23%), Positives = 180/416 (43%), Gaps = 51/416 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G +YTT+L K+ S+ + +++ G +D++ + +V++ S +G+++ A
Sbjct: 75 GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDA 134
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG---LPPNCYTYTVL 177
V +MK PT +Y +K + + + ++++ M++ G + PN T+ VL
Sbjct: 135 VQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVL 194
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
++ + K EEA E+ KM+E GV+PD N + + GET ++
Sbjct: 195 VQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGET---------VRAESE 245
Query: 238 ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLV 297
+ V KE A N V + E D + FV E
Sbjct: 246 VVEKMVMKEK------AKPNGRTCGIVVGGYCREG-RVRDGLRFVRRMKE---------- 288
Query: 298 LILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN 357
+ + NLV +SL++G ++ +D I ++ L E +VK D+
Sbjct: 289 --MRVEANLVVFNSLINGFVE---VMDRDGIDEVL------------TLMKECNVKADV- 330
Query: 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKI 417
Y ++ K A++ +EM KAG + ++L A+ P A ++
Sbjct: 331 ---ITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEEL 387
Query: 418 F-SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
+L+ E + +T +I + S GS D A++++ MC+ G+ P++ TF L+ G
Sbjct: 388 LETLIVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWG 443
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D TY+T+++ + A + VF+ M + G+ DA Y+ + A + A +
Sbjct: 329 DVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELL 388
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
E + + E P +V +T + N + +A V+ +M + G+ PN T+ LM +
Sbjct: 389 ETL-IVESRPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEV 447
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIE 214
+ +A E+ M+ GV+P+ + +L E
Sbjct: 448 KQPWKAEEVLQMMRGCGVKPENSTFLLLAE 477
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/347 (19%), Positives = 138/347 (39%), Gaps = 25/347 (7%)
Query: 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIF 194
T+ S T M +L R EA V+K + + G P+ +YT L+ + +Y I
Sbjct: 44 TVRSRTKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIV 103
Query: 195 SKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVA 254
S+++++G + D N +I ++G + L MKE L + ++ + +A
Sbjct: 104 SEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIA 163
Query: 255 DENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLS 314
+ P+ S E + + +E D+ + LV KKK + ++
Sbjct: 164 GK---------PERSSELL--DLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVK 212
Query: 315 GIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI--- 371
+ + ++ D+ +TI C ++ + E KM + + GI++
Sbjct: 213 KMEECGVRPDTVTYNTI--ATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGY 270
Query: 372 -KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA- 429
+ V M + + + LI+ ++ +L+ E C
Sbjct: 271 CREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE---CNVK 327
Query: 430 ----TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
TY+ ++ + SAG +KA +++K M + G+ P +++L G
Sbjct: 328 ADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKG 374
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 193/465 (41%), Gaps = 48/465 (10%)
Query: 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126
FTY ++ F A I +F+ M+ KG + VTY +++ +D +
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 127 MKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186
M LK P ++SY + L R+KE + V EM +RG + TY L++ + G
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR---YPV 243
+ +AL + ++M G+ P LI CKAG + L M+ L Y
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 244 FKEALQTFKVADENDSLLWQVHPQ-FSPEFISDNDAV--EFVTTDIEGPLSIDQGLVLIL 300
+ +E +L +++ FSP ++ N + VT +E ++ VL
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA-----VLED 440
Query: 301 LKKKNL----VAIDSLLSG----------------IMDKSIQLDSAVISTIIEVNCDHRR 340
+K+K L V+ ++LSG +++K I+ D+ S++I+ C+ RR
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500
Query: 341 RDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL 400
A +E +++ L + Y ALI K ++ EM + G V ++
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 401 LIHRLGSARRPVPAAKIFSLL------PED-------QKCT----ATYTALIGVYFSAGS 443
LI+ L R A ++ L P D + C+ + +LI + G
Sbjct: 561 LINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGM 620
Query: 444 ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488
+A +++++M K P +N+++ G + G + A KE
Sbjct: 621 MTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 90/163 (55%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF+ TY +++ ++ V E M+EKG++ D V+Y++V+ + DVD A
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+ + EM K P ++Y++ ++ R KEA D+Y+EM++ GLPP+ +TYT L+
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223
G E+AL++ ++M E GV PD ++LI K TR
Sbjct: 530 YCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTR 572
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/423 (19%), Positives = 174/423 (41%), Gaps = 30/423 (7%)
Query: 88 VFELMQEKGINIDAVTYTSVMH-WLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146
+ L Q G ++Y +V+ + + ++ A N+++EM + P + +Y ++
Sbjct: 156 IVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGF 215
Query: 147 FLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK 206
+ A ++ +M +G PN TY L++ + K ++ ++ M G++P+
Sbjct: 216 CFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNL 275
Query: 207 AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF-KVADENDSLLWQ-- 263
+ N++I C+ G + + +L M +L + ++ + K + + +L+
Sbjct: 276 ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335
Query: 264 -VHPQFSPEFIS-------------DNDAVEFVTTDIEGPLSIDQGLVLILL----KKKN 305
+ +P I+ N A+EF+ L ++ L+ +K
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395
Query: 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLA 365
+ +L + D + +I +C + + A+ E + L+ + +Y
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455
Query: 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL----- 420
++ + + + EM + G + LI RR A ++
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 421 LPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVS 480
LP D+ TYTALI Y G +KAL+++ M KG+ P + T++VL+ GL K R
Sbjct: 516 LPPDE---FTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTR 572
Query: 481 DAE 483
+A+
Sbjct: 573 EAK 575
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 84/164 (51%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
G TYT+++ +A ++ + M+ +G+ + TYT+++ S G ++
Sbjct: 339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNE 398
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A + EM P++V+Y A + + ++++A V ++M ++GL P+ +Y+ ++
Sbjct: 399 AYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223
R+ +EAL + +M E G++PD + LI+ C+ T+
Sbjct: 459 GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/413 (22%), Positives = 176/413 (42%), Gaps = 53/413 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF + TY +L + ++ + + + M+E+ I +DAV Y+ ++ L G +D A
Sbjct: 207 GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNA 266
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
N++ EM++K I+ YT ++ R + + ++MI+R + P+ ++ L++
Sbjct: 267 FNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDC 326
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
V+ GK EA E+ +M + G+ PD LI+ CK EN+L
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK---------------ENQLD-- 369
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVE-FVTTDIEGPLSIDQGLVLI 299
N L V P + N + + ++ ID GL L
Sbjct: 370 --------------KANHMLDLMVSKGCGPNIRTFNILINGYCKANL-----IDDGLEL- 409
Query: 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+K +L + + D+ +T+I+ C+ + + A F+ V + +
Sbjct: 410 -FRKMSL------------RGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
+Y L+ L K EI E++ K+ L + + ++IH + +A + A +F
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516
Query: 420 LLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470
LP + TY +IG GS +A +++ M G P+ T+N+L+
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/456 (21%), Positives = 200/456 (43%), Gaps = 32/456 (7%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G H+ +T + M++ +++S + + G D VT++++++ L G V
Sbjct: 101 KGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSE 160
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ + + M PT+++ A + L LN +V +A + M++ G PN TY +++
Sbjct: 161 ALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLK 220
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+ ++G+ A+E+ KM+E ++ D +I+I+ CK G + M+
Sbjct: 221 VMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKA 280
Query: 240 RYPVFKEALQTFKVA---DENDSLLWQ-VHPQFSPEFISDNDAVE-FVTTDIEGPLSIDQ 294
++ ++ F A D+ LL + + +P+ ++ + ++ FV EG L +
Sbjct: 281 DIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK---EGKLREAE 337
Query: 295 GLVLILLKKK---NLVAIDSLLSGIMDKSIQLDSA--VISTIIEVNCDHRRRDGALL--- 346
L ++++ + V SL+ G K QLD A ++ ++ C R +L
Sbjct: 338 ELHKEMIQRGISPDTVTYTSLIDGFC-KENQLDKANHMLDLMVSKGCGPNIRTFNILING 396
Query: 347 ---------AFEYSVKMDLN---LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394
E KM L + Y LI +L E+ +EM
Sbjct: 397 YCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD 456
Query: 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQK--CTATYTALIGVYFSAGSADKALKIYK 452
+ +L+ L P A +IF + + + Y +I +A D A ++
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516
Query: 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE-IYRK 487
++ KG+ P + T+N+++ GL K G +S+A+ ++RK
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 35/211 (16%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG + D TYT+++D F + ++ ++ +LM KG + T+ +++ A +D
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDD 405
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+ ++ +M L+ V+Y ++ +++ A ++++EM+ R + P+ +Y +L++
Sbjct: 406 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLD 465
Query: 180 YLVRAGKYEEALEIFSKMQEA-----------------------------------GVQP 204
L G+ E+ALEIF K++++ GV+P
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525
Query: 205 DKAACNILIEKCCKAGETRTIILILRYMKEN 235
D NI+I CK G L+ R M+E+
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 79/154 (51%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG D TY T++ F E ++ K +F+ M + + D V+Y ++ L + G+ +
Sbjct: 416 RGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ I+E+++ + I Y + + +V +A D++ + +G+ P+ TY +++
Sbjct: 476 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213
L + G EA +F KM+E G P+ NILI
Sbjct: 536 GLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 156/393 (39%), Gaps = 34/393 (8%)
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
D AV++++EM P ++ ++ ++ + D+ K+M +G+ N YT +++
Sbjct: 54 DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+ R K A K+ + G +PD + LI C G + ++ M E
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG- 172
Query: 238 ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG---PLSIDQ 294
K L T L +V +DAV + +E P +
Sbjct: 173 ------HKPTLITLNALVNGLCLNGKV-----------SDAVLLIDRMVETGFQPNEVTY 215
Query: 295 GLVLILLKKKNLVAID-SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK 353
G VL ++ K A+ LL + ++ I+LD+ S II+ C D A F
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275
Query: 354 MDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH---RLGSARR 410
+ Y LI + A+++ +M K + V + LI + G R
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335
Query: 411 PVPAAKIF---SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFN 467
K + P+ T TYT+LI + DKA + M KG P++ TFN
Sbjct: 336 AEELHKEMIQRGISPD----TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391
Query: 468 VLLAGLEKLGRVSDA-EIYRKEK-KSIQADALS 498
+L+ G K + D E++RK + + AD ++
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/424 (21%), Positives = 165/424 (38%), Gaps = 59/424 (13%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
D F Y +++ F + RI V + M+ K + D VTY ++ L + G +D A+ +
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
++ C PT+++YT ++ L V EA + EM+ RGL P+ +TY ++ + +
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF 244
G + A E+ ++ G +PD + NIL+ G+
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK----------------------- 313
Query: 245 KEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304
W+ + + S+ VT I L+ L +
Sbjct: 314 -----------------WEEGEKLMTKMFSEKCDPNVVTYSI---------LITTLCRDG 347
Query: 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYL 364
+ +LL + +K + D+ +I C R D A+ E + + Y
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407
Query: 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF------ 418
++ L K + EI ++ + G S + L S+ + A +
Sbjct: 408 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN 467
Query: 419 SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478
+ P++ TY ++I G D+A ++ M HPS+ T+N++L G K R
Sbjct: 468 GIDPDE----ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523
Query: 479 VSDA 482
+ DA
Sbjct: 524 IEDA 527
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE---KGINIDAVTYTSVMHWLSNAG 115
SRG D FTY T+ I G K + FE+++ KG D ++Y ++ L N G
Sbjct: 256 SRGLKPDMFTYNTI--IRGMCKE-GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312
Query: 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175
+ + +M ++C P +V+Y+ + L + +++EA ++ K M ++GL P+ Y+Y
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYD 372
Query: 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
L+ R G+ + A+E M G PD N ++ CK G+ + I + E
Sbjct: 373 PLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 61 GFNHDRFTYTTMLD-IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
G + + +Y TM ++ +I ++ + E+M GI+ D +TY S++ L G VD
Sbjct: 433 GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMS-NGIDPDEITYNSMISCLCREGMVDE 491
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A + +M+ E +P++V+Y + R+++A +V + M+ G PN TYTVL+E
Sbjct: 492 AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIE 551
Query: 180 YLVRAGKYEEALEI 193
+ AG EA+E+
Sbjct: 552 GIGFAGYRAEAMEL 565
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+ +G D ++Y ++ F R+ E M G D V Y +V+ L G
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
D A+ I+ ++ C P SY L+ + A + EM+ G+ P+ TY +
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSM 479
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
+ L R G +EA E+ M+ P NI++ CKA I +L M N
Sbjct: 480 ISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
RS+ F+ D TY M+ ++ V + +TYT ++ G V
Sbjct: 185 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGV 244
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
D A+ + +EM + P + +Y ++ + V A ++ + + +G P+ +Y +L
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNIL 304
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237
+ L+ GK+EE ++ +KM P+ +ILI C+ G+ + +L+ MKE L
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364
Query: 238 A 238
Sbjct: 365 T 365
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421
AY ALI K+N +++ M S ++I L S + A K+ + L
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 422 PED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
D Q TYT LI G D+ALK+ M +G+ P + T+N ++ G+ K G V
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Query: 480 SDA-EIYRK-EKKSIQADALS 498
A E+ R E K + D +S
Sbjct: 280 DRAFEMVRNLELKGCEPDVIS 300
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL---MQEKGINIDAVTYTSVMHWLSNAG 115
S G + D TY +M+ R + FEL M+ + VTY V+ A
Sbjct: 466 SNGIDPDEITYNSMISCLC---REGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522
Query: 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164
++ A+N+ E M C P +YT ++ + EA ++ ++++
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 186/431 (43%), Gaps = 35/431 (8%)
Query: 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK-ECYPTIVSYT 140
ISS + VF+ M + G++++ T+ +++ G ++ A+ + E M + + P V+Y
Sbjct: 185 ISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244
Query: 141 AYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200
+K + R+ + ++ +M + GL PN TY L+ + G +EA +I M++
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT 304
Query: 201 GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKE----------ALQT 250
V PD NILI C AG R + ++ MK +L + +L+
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEA 364
Query: 251 FKVAD--ENDSL-LWQVHPQFSPEFISDNDAVEFVT------TDIEGPLSID----QGLV 297
K+ + END + QV S +++ + E VT D+ G S D L+
Sbjct: 365 RKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHG-FSPDIVTYHTLI 423
Query: 298 LILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN 357
LK +L ++ + K I++++ ++TI++ C R+ D A + K
Sbjct: 424 KAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFI 483
Query: 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKI 417
++ Y LI + K E+ +EM K + V LI L + A +
Sbjct: 484 VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEK 543
Query: 418 F------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471
F LLP+D +T+ ++I Y G +KA + Y + P T N+LL
Sbjct: 544 FDELAESGLLPDD----STFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLN 599
Query: 472 GLEKLGRVSDA 482
GL K G A
Sbjct: 600 GLCKEGMTEKA 610
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 87/177 (49%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
+G + T T+LD + +++ + ++G +D VTY +++ V+
Sbjct: 445 KGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEK 504
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ +W+EMK + PT+ ++ + + L + + + A + + E+ + GL P+ T+ ++
Sbjct: 505 ALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIIL 564
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236
+ G+ E+A E +++ + +PD CNIL+ CK G T + + E R
Sbjct: 565 GYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER 621
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/434 (20%), Positives = 180/434 (41%), Gaps = 28/434 (6%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF---ELMQEKGINIDAVTYTSVMHWLSNA 114
+ G +R TY + ++G K + S+K F ELM++ + D TY +++ L NA
Sbjct: 267 KKNGLVPNRVTYNNL--VYGYCK-LGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNA 323
Query: 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTY 174
G + + + + MK + P +V+Y + F EA + ++M G+ N T+
Sbjct: 324 GSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTH 383
Query: 175 TVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKCCKAGETRTIILILRYMK 233
+ +++L + K E ++ + G PD + LI+ K G+ + ++R M
Sbjct: 384 NISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMG 443
Query: 234 ENRLALRYPVFK---EALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPL 290
+ + + +AL + DE +LL H + FI D V + T
Sbjct: 444 QKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKR---GFIVDE--VTYGT------- 491
Query: 291 SIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEY 350
L++ +++ + + + I + +++I C H + + A+ F+
Sbjct: 492 -----LIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDE 546
Query: 351 SVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARR 410
+ L + + + ++I K K E E K Y +L++ L
Sbjct: 547 LAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGM 606
Query: 411 PVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469
A F+ L E+++ T TY +I + +A + M KG+ P T+N
Sbjct: 607 TEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSF 666
Query: 470 LAGLEKLGRVSDAE 483
++ L + G++S+ +
Sbjct: 667 ISLLMEDGKLSETD 680
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 8/246 (3%)
Query: 29 IKWDSYTVNQVLKT---HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85
IK ++ T+N +L +++A N + RGF D TY T++ F +++
Sbjct: 447 IKMNTITLNTILDALCKERKLDEAHNLLNSAHK-RGFIVDEVTYGTLIMGFFREEKVEKA 505
Query: 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145
+++ M++ I T+ S++ L + G + A+ ++E+ P ++ + +
Sbjct: 506 LEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILG 565
Query: 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD 205
RV++A + Y E I+ P+ YT +L+ L + G E+AL F+ + E + D
Sbjct: 566 YCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVD 624
Query: 206 KAACNILIEKCCKAGETRTIILILRYMKENRLA---LRYPVFKEALQTFKVADENDSLLW 262
N +I CK + + +L M+E L Y F L E D LL
Sbjct: 625 TVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLK 684
Query: 263 QVHPQF 268
+ +F
Sbjct: 685 KFSGKF 690
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 84/405 (20%), Positives = 150/405 (37%), Gaps = 97/405 (23%)
Query: 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVR------------------------------- 183
A ++++MI+ L PN T L+ LVR
Sbjct: 150 ALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNV 209
Query: 184 -------AGKYEEALEIFSKM-QEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
GK E+AL + +M E V PD N +++ K G + +L MK+N
Sbjct: 210 LVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKN 269
Query: 236 RLA-------------LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282
L + KEA Q ++ + + L P+ + N +
Sbjct: 270 GLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL---------PDLCTYN----IL 316
Query: 283 TTDIEGPLSIDQGLVLI-----LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVN-- 335
+ S+ +GL L+ L + ++V ++L+ G + + L++ + +E +
Sbjct: 317 INGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGV 376
Query: 336 --------------CDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPKVA 380
C +R+ + V M + + Y LI +K+
Sbjct: 377 KANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGAL 436
Query: 381 EIVEEMTKAG-----HSLGVYLGALLIHR-LGSARRPVPAAKIFSLLPEDQKCTATYTAL 434
E++ EM + G +L L AL R L A + +A + ++ TY L
Sbjct: 437 EMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE----VTYGTL 492
Query: 435 IGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479
I +F +KAL+++ M + I P++ TFN L+ GL G+
Sbjct: 493 IMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKT 537
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 9/217 (4%)
Query: 20 AQDLLKNLP---IKWDSYTVNQVLKTHPPMEKA----WLFFNWVSRSRGFNHDRFTYTTM 72
A ++ + +P K D YT N ++ +++ WL + +S G + TY T+
Sbjct: 478 AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE--GVVANTVTYNTL 535
Query: 73 LDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC 132
++ F I + + M +G +D +TY S++ L AG+VD A +++E+M
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192
P+ +S + L + V+EA + KEM+ RG P+ T+ L+ L RAG+ E+ L
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILIL 229
+F K+Q G+ PD N L+ CK G L+L
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLL 692
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/467 (20%), Positives = 181/467 (38%), Gaps = 26/467 (5%)
Query: 22 DLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81
D L+N K + + ++L+ + + F+W G+ H Y ++ G
Sbjct: 67 DSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGE 126
Query: 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK-LKECYPTIVSYT 140
++ + M+++GI + S+M AG + EM+ + C PT SY
Sbjct: 127 FKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYN 186
Query: 141 AYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200
++IL + K A +V+ +M+ R +PP +T+ V+M+ + + AL + M +
Sbjct: 187 VVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH 246
Query: 201 GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSL 260
G P+ LI K + +L M F + + D +
Sbjct: 247 GCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 306
Query: 261 LWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL-LKKKNLVAIDSLLSGIMDK 319
V+ F D+ ++ + +D L + K +V ++L+ G +
Sbjct: 307 AKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTH 366
Query: 320 SIQLDS--AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377
+LD AV+S ++ Y + D+ Y +LI K
Sbjct: 367 G-RLDDAKAVLSDMVT---------------SYGIVPDV----CTYNSLIYGYWKEGLVG 406
Query: 378 KVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALI 435
E++ +M G VY +L+ + A + + + D + T + LI
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
+ +A++I++ M RKG P + TFN L++GL ++ + A
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 513
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 90/424 (21%), Positives = 163/424 (38%), Gaps = 52/424 (12%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RGF D TY +++ + R+ + K +F + + I V + +++H G +D
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLDD 371
Query: 120 AVNIWEEMKLK-ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A + +M P + +Y + + + V A +V +M +G PN Y+YT+L+
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238
+ + GK +EA + ++M G++P+ N LI CK + I R M
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491
Query: 239 LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL 298
F + DE LW + + IS+ VT + L+
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLR-----DMISEGVVANTVTYNT---------LIN 537
Query: 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358
L++ + L++ ++ + LD +++I+ C D A FE ++
Sbjct: 538 AFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597
Query: 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF 418
+ LI L + + E +EM G + +
Sbjct: 598 SNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI----------------------- 634
Query: 419 SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478
T+ +LI AG + L +++ + +GI P TFN L++ L K G
Sbjct: 635 ----------VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGF 684
Query: 479 VSDA 482
V DA
Sbjct: 685 VYDA 688
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/492 (21%), Positives = 192/492 (39%), Gaps = 35/492 (7%)
Query: 49 AWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVM 108
A +F++ +SR FT+ ++ F I S + M + G ++V Y +++
Sbjct: 202 ANVFYDMLSRK--IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLI 259
Query: 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP 168
H LS V+ A+ + EEM L C P ++ + L DR+ EA + M+ RG
Sbjct: 260 HSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFA 319
Query: 169 PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILI 228
P+ TY LM L + G+ + A ++F ++ +P+ N LI G +
Sbjct: 320 PDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAV 375
Query: 229 LRYMKENRL---------ALRYPVFKEALQTFKVADENDSLLWQVHPQ-FSPEFISDN-- 276
L M + +L Y +KE L + +D P +S + D
Sbjct: 376 LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC 435
Query: 277 ---------DAVEFVTTDIEGPLSID-QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSA 326
+ + ++ D P ++ L+ K+ + + + K + D
Sbjct: 436 KLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY 495
Query: 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEM 386
+++I C+ AL + + Y LI ++ + ++V EM
Sbjct: 496 TFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 555
Query: 387 TKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTA--LIGVYFSAGSA 444
G L LI L A A +F + D + + LI +G
Sbjct: 556 VFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMV 615
Query: 445 DKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA-EIYRKEKKSIQADALSKDAVP 503
++A++ K M +G P + TFN L+ GL + GR+ D ++RK +QA+ + D V
Sbjct: 616 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRK----LQAEGIPPDTVT 671
Query: 504 MEEKICDLLYGG 515
+ L GG
Sbjct: 672 FNTLMSWLCKGG 683
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+++A+ N +S + G + + ++ F + RI +F M KG D T+
Sbjct: 440 IDEAYNVLNEMS-ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFN 498
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
S++ L ++ A+ + +M + V+Y + +KEA + EM+ +
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQ 558
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG 220
G P + TY L++ L RAG+ ++A +F KM G P +CNILI C++G
Sbjct: 559 GSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Query: 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRF 67
+ K D+A+DL +P K + N ++ TH ++ A + + S G D
Sbjct: 332 LCKIGRVDAAKDLFYRIP-KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVC 390
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY +++ + + + V M+ KG + +YT ++ G +D A N+ EM
Sbjct: 391 TYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM 450
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
P V + + R+ EA ++++EM ++G P+ YT+ L+ L +
Sbjct: 451 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223
+ AL + M GV + N LI + GE +
Sbjct: 511 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 546
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 145/372 (38%), Gaps = 64/372 (17%)
Query: 190 ALEIFS-KMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEAL 248
++E+FS + G + +LI K GE +TI +L MK+ + + +F +
Sbjct: 94 SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIM 153
Query: 249 QTFKVA---DENDSLLWQVHPQFS--PEFISDNDAVEFVTT------------DIEG--- 288
+ + A + L+ ++ +S P F S N +E + + D+
Sbjct: 154 RDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI 213
Query: 289 -PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ---LDSAVISTIIEVNCDHRRRDGA 344
P G+V+ N IDS LS + D + +S + T+I R + A
Sbjct: 214 PPTLFTFGVVMKAFCAVN--EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA 271
Query: 345 LLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-----SLGVYLGA 399
L E M + + +I L K + + A++V M G + G +
Sbjct: 272 LQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331
Query: 400 LL-IHRLGSA-----RRPVPAAKIFSLLP---------EDQKC--------------TAT 430
L I R+ +A R P P IF+ L +D K T
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCT 391
Query: 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490
Y +LI Y+ G AL++ M KG P++ ++ +L+ G KLG++ +A E
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNE-- 449
Query: 491 SIQADALSKDAV 502
+ AD L + V
Sbjct: 450 -MSADGLKPNTV 460
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/471 (20%), Positives = 198/471 (42%), Gaps = 27/471 (5%)
Query: 29 IKWDSYTVNQVLKTHPPMEKAWLFFNWVSRS--RGFNHDRFTYTTMLDIFGEAKRISSMK 86
I+ D YT+ ++ + +K F+ + R+ G+ D T++T+++ F R+S
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAV 160
Query: 87 YVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146
+ + M E D VT +++++ L G V A+ + + M P V+Y + L
Sbjct: 161 ALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRL 220
Query: 147 FLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK 206
+ A D++++M +R + + Y+++++ L + G +++AL +F++M+ G++ D
Sbjct: 221 CKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280
Query: 207 AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF----KVADENDSLLW 262
+ LI C G+ +LR M + F + F K+ + +
Sbjct: 281 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340
Query: 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322
+ +P+ I+ N ++ K+ L + + ++ K +
Sbjct: 341 MITRGIAPDTITYNSLIDG------------------FCKENCLHEANQMFDLMVSKGCE 382
Query: 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEI 382
D S +I C +R D + F L Y L+ + E+
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442
Query: 383 VEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC--TATYTALIGVYFS 440
+EM G V +L+ L A +IF + + + Y +I +
Sbjct: 443 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 502
Query: 441 AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE-IYRKEKK 490
A D A ++ ++ KG+ P + T+NV++ GL K G +S+A+ ++RK K+
Sbjct: 503 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 35/212 (16%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
+RG D TY +++D F + + +F+LM KG D VTY+ +++ A VD
Sbjct: 343 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 402
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
+ ++ E+ K P ++Y + + ++ A ++++EM+ RG+PP+ TY +L+
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 179 EYLVRAGKYEEALEIFSKMQEA-----------------------------------GVQ 203
+ L G+ +ALEIF KMQ++ GV+
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522
Query: 204 PDKAACNILIEKCCKAGETRTIILILRYMKEN 235
PD N++I CK G ++ R MKE+
Sbjct: 523 PDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S+G + TY T++ F ++ ++++ K +F+ M +G+ VTY ++ L + G+++
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A+ I+E+M+ I Y + + +V +A ++ + +G+ P+ TY V++
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213
L + G EA +F KM+E G PD NILI
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
SRG TY +LD + ++ +FE MQ+ + + Y ++H + NA VD
Sbjct: 448 SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 507
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A +++ + K P +V+Y + L + EA ++++M + G P+ +TY +L+
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
+ ++E+ +M+ G D + ++I+
Sbjct: 568 RAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/394 (18%), Positives = 152/394 (38%), Gaps = 31/394 (7%)
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
V+ A++++E M PT + + + + K M G+ + YT T+
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 110
Query: 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236
++ R K A + + + G +PD + L+ C G + ++ M E +
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170
Query: 237 ----LALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292
L + +V++ + V F P+ ++ + + L++
Sbjct: 171 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230
Query: 293 DQGLVLILLKKKNL--------VAIDSLL-SGIMD-----------KSIQLDSAVISTII 332
D + ++++N+ + IDSL G D K I+ D S++I
Sbjct: 231 D---LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 287
Query: 333 EVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS 392
C+ + D + ++ + + ALI + +K + E+ EM G +
Sbjct: 288 GGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347
Query: 393 LGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---TATYTALIGVYFSAGSADKALK 449
LI A ++F L+ + C TY+ LI Y A D ++
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVS-KGCEPDIVTYSILINSYCKAKRVDDGMR 406
Query: 450 IYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483
+++ + KG+ P+ T+N L+ G + G+++ A+
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 142/364 (39%), Gaps = 62/364 (17%)
Query: 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK 196
+SY ++ ++ +V +A D+++ MIQ P + L + R +Y+ L
Sbjct: 36 LSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG 95
Query: 197 MQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADE 256
M+ G++ D I+I C Y ++ +L + V A
Sbjct: 96 MELNGIEHDMYTMTIMI-NC--------------YCRKKKLLFAFSVLGRA--------- 131
Query: 257 NDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLV--LILLKKK-NLVAIDSLL 313
W++ + P+ I+ + V +EG +S LV ++ +K++ +LV + +L+
Sbjct: 132 -----WKLG--YEPDTITFSTLVNGFC--LEGRVSEAVALVDRMVEMKQRPDLVTVSTLI 182
Query: 314 SGIMDK----------------SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN 357
+G+ K Q D ++ C AL F + ++
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 242
Query: 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKI 417
Y +I L K +F + EM G V + LI L + + AK+
Sbjct: 243 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 302
Query: 418 F------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471
+++P+ T++ALI V+ G +A ++Y M +GI P T+N L+
Sbjct: 303 LREMIGRNIIPD----VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358
Query: 472 GLEK 475
G K
Sbjct: 359 GFCK 362
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+ KA F + +SR Y ++ A ++ +F + +KG+ D VTY
Sbjct: 471 LNKALEIFEKMQKSR-MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ L G + A ++ +MK C P +Y ++ + + ++ +EM
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVC 589
Query: 166 GLPPNCYTYTVLMEYL 181
G + T ++++ L
Sbjct: 590 GFSADSSTIKMVIDML 605
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/467 (21%), Positives = 193/467 (41%), Gaps = 46/467 (9%)
Query: 49 AWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVM 108
A FF ++ S F H T+ M+ ++ S++Y+ + M+ +G + + SV+
Sbjct: 59 ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVI 118
Query: 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP 168
G + AV ++ +K C P++ Y + L +R++ VY++M + G
Sbjct: 119 SVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFE 178
Query: 169 PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILI 228
PN +TY VL++ L + K + A ++ +M G PD + +I C+ G
Sbjct: 179 PNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG-------- 230
Query: 229 LRYMKENR-LALRY-PVFK--EALQTFKVADENDS------LLWQVHPQFSPEFISDNDA 278
+KE R LA R+ PV AL + E+D + V SP IS +
Sbjct: 231 --LVKEGRELAERFEPVVSVYNALIN-GLCKEHDYKGAFELMREMVEKGISPNVISYSTL 287
Query: 279 VEFVTTDIEGPLSIDQGLVLILLKK---KNLVAIDSLLSGIMDKSIQLDS---------- 325
+ + G + + + +LK+ N+ + SL+ G + D+
Sbjct: 288 INVLCNS--GQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRG 345
Query: 326 -------AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378
+T+++ C H A+ F + ++ + Y +LI K +
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDG 405
Query: 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA--TYTALIG 436
I +M +G V + ++ L + A + ++ ++ + T+ A I
Sbjct: 406 AVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIK 465
Query: 437 VYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAGLEKLGRVSDA 482
AG D A K+++ M ++ P++ T+N LL GL K R+ +A
Sbjct: 466 GLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEA 512
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
YT M++ + + + E+M ++ T+ + + L +AG +D A ++ +M
Sbjct: 424 VYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM 483
Query: 128 KLKE-CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186
+ + C P IV+Y + L +R++EA + +E+ RG+ + TY L+ AG
Sbjct: 484 EQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGL 543
Query: 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
AL++ KM G PD+ N++I CK G+
Sbjct: 544 PGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGK 578
Score = 39.3 bits (90), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY +LD +A RI + + +G+ + TY +++H NAG A+ + +M
Sbjct: 495 TYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKM 554
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYK--EMIQRGLPPNCYTYTVLMEYLVRAG 185
+ P ++ + + + A + +R P+ +YT ++ L R+
Sbjct: 555 MVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSN 614
Query: 186 KYEEALEIFSKMQEAGVQPDKAACNILI 213
E+ + + +M AG+ P A ++LI
Sbjct: 615 CREDGVILLERMISAGIVPSIATWSVLI 642
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY+ +LD F + ++ K +FE M I+ D VTY+S+++ L +D A +++ M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
K C +VSY + RV++ +++EM QRGL N TY L++ +AG
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
++A E FS+M G+ PD NIL+ C GE ++I M++ + L
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 2/215 (0%)
Query: 5 ISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSR--SRGF 62
+S + K+ KY S ++ L I+ D YT N V+ + L + + + G+
Sbjct: 92 LSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGY 151
Query: 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122
DR T ++++ F R+S + + M E G D V Y +++ L V+ A +
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 211
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
++E++ K P +V+YTA + L + R +A + +MI++ + PN TY+ L++ V
Sbjct: 212 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFV 271
Query: 183 RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCC 217
+ GK EA E+F +M + PD + LI C
Sbjct: 272 KNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G+ D Y ++D + KR++ F+ ++ KGI + VTYT++++ L N+ A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+ +M K+ P +++Y+A + N +V EA ++++EM++ + P+ TY+ L+
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L + +EA ++F M G D + N LI CKA + + R M + L
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364
Query: 241 YPVFKEALQTFKVADEND 258
+ +Q F A + D
Sbjct: 365 TVTYNTLIQGFFQAGDVD 382
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 97/195 (49%), Gaps = 1/195 (0%)
Query: 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAV 102
H +++A F+ + S+G D +Y T+++ F +AKR+ +F M ++G+ + V
Sbjct: 308 HDRIDEANQMFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366
Query: 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162
TY +++ AGDVD A + +M P I +Y + L N +++A ++++M
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426
Query: 163 IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
+R + + TYT ++ + + GK EEA +F + G++PD ++ C G
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLL 486
Query: 223 RTIILILRYMKENRL 237
+ + MK+ L
Sbjct: 487 HEVEALYTKMKQEGL 501
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 15 STWDSAQDLLKNLPIKWDSYTV-------NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRF 67
S W A LL ++ K + V + +K +E LF V S + D
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS--IDPDIV 296
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TY+++++ RI +F+LM KG D V+Y ++++ A V+ + ++ EM
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+ V+Y ++ F V +A + + +M G+ P+ +TY +L+ L G+
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 416
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
E+AL IF MQ+ + D +I CK G+
Sbjct: 417 EKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK 450
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/433 (20%), Positives = 172/433 (39%), Gaps = 52/433 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G +D +T+ +++ F ++S + M + G D VT S+++ V A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
V++ ++M P IV+Y A + L RV +A D +KE+ ++G+ PN TYT L+
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
L + ++ +A + S M + + P+ + L++ ++K ++
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA---------------FVKNGKVLEA 279
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+F+E V P+ ++ + S+ GL L
Sbjct: 280 KELFEE----------------MVRMSIDPDIVTYS--------------SLINGLCL-- 307
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
+ + + ++ K D +T+I C +R + + F + L
Sbjct: 308 --HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNT 365
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
Y LI + K E +M G S ++ +L+ L A IF
Sbjct: 366 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 421 LPEDQKC--TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478
+ + + TYT +I G ++A ++ ++ KG+ P + T+ +++GL G
Sbjct: 426 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485
Query: 479 VSDAE-IYRKEKK 490
+ + E +Y K K+
Sbjct: 486 LHEVEALYTKMKQ 498
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 150/385 (38%), Gaps = 24/385 (6%)
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTV 176
++ A++++ +M +P+IV + + + + + K+M G+ + YT+ +
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE-- 234
++ + AL I KM + G +PD+ L+ C+ + ++ M E
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185
Query: 235 --NRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292
+ + +T +V D D P ++ T + G
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT-------YTALVNG---- 234
Query: 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352
L LLS ++ K I + S +++ + + A FE V
Sbjct: 235 -------LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287
Query: 353 KMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPV 412
+M ++ + Y +LI L + + ++ + M G V LI+ A+R
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 347
Query: 413 PAAKIFSLLPEDQ--KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470
K+F + + T TY LI +F AG DKA + + M GI P + T+N+LL
Sbjct: 348 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILL 407
Query: 471 AGLEKLGRVSDAEIYRKEKKSIQAD 495
GL G + A + ++ + + D
Sbjct: 408 GGLCDNGELEKALVIFEDMQKREMD 432
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
++KA FF+ + G + D +TY +L + + +FE MQ++ +++D VTYT
Sbjct: 381 VDKAQEFFSQMDFF-GISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 439
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
+V+ + G V+ A +++ + LK P IV+YT M L + E +Y +M Q
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
Query: 166 GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204
GL N T + G + E+ KM G P
Sbjct: 500 GLMKNDCTLS--------DGDITLSAELIKKMLSCGYAP 530
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 92/412 (22%), Positives = 179/412 (43%), Gaps = 51/412 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
GF + TY +L++ ++ + + + M+E+ I +DAV Y+ ++ L G +D A
Sbjct: 223 GFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA 282
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
N++ EM++K I++Y + R + + ++MI+R + PN T++VL++
Sbjct: 283 FNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDS 342
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
V+ GK EA ++ +M + G+ P+ N LI+ C KENRL
Sbjct: 343 FVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC---------------KENRL--- 384
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+EA+Q + + P+ ++ N + ID GL L
Sbjct: 385 ----EEAIQMVDL---------MISKGCDPDIMTFN----ILINGYCKANRIDDGLE--L 425
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
++ +L + + ++ +T+++ C + + A F+ V + +
Sbjct: 426 FREMSL------------RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDI 473
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
+Y L+ L K EI ++ K+ L + + ++IH + +A + A +F
Sbjct: 474 VSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCS 533
Query: 421 LP-EDQKCTA-TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470
LP + K A Y +I S KA +++ M +G P T+N+L+
Sbjct: 534 LPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 155/370 (41%), Gaps = 21/370 (5%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
R D Y+ ++D + + + +F M+ KG D +TY +++ NAG D
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
+ +M ++ P +V+++ + +++EA + KEM+QRG+ PN TY L++
Sbjct: 317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID 376
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL 239
+ + EEA+++ M G PD NILI CKA + + R M +
Sbjct: 377 GFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIA 436
Query: 240 RYPVFKEALQTFKVAD--ENDSLLWQ--VHPQFSPEFIS---------DN----DAVEFV 282
+ +Q F + E L+Q V + P+ +S DN A+E
Sbjct: 437 NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIF 496
Query: 283 TTDIEGPLSIDQGLVLILLKKK-NLVAIDS---LLSGIMDKSIQLDSAVISTIIEVNCDH 338
+ + +D G+ +I++ N +D L + K ++LD+ + +I C
Sbjct: 497 GKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRK 556
Query: 339 RRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLG 398
A + F + + Y LI + + AE++EEM +G V
Sbjct: 557 DSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTV 616
Query: 399 ALLIHRLGSA 408
++I+ L S
Sbjct: 617 KMVINMLSSG 626
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/437 (20%), Positives = 175/437 (40%), Gaps = 54/437 (12%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELM---QEKGINIDAVTYTSVMHWLSNAG 115
S+G H +T + M++ F +++S Y F M + G D V + ++++ L
Sbjct: 116 SKGIAHSIYTLSIMINCFCRCRKLS---YAFSTMGKIMKLGYEPDTVIFNTLLNGLCLEC 172
Query: 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175
V A+ + + M PT+++ + L LN +V +A + M++ G PN TY
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
Query: 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235
++ + ++G+ A+E+ KM+E ++ D +I+I+ CK G + M+
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
Query: 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295
+ + F A W + + I + VT +
Sbjct: 293 GFKADIITYNTLIGGFCNAGR-----WDDGAKLLRDMIKRKISPNVVTFSV--------- 338
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD 355
L+ +K+ L D LL +M + I ++ +++I+ C R + A+ + +
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415
+ + + LI K N E+ EM+ G V A
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRG---------------------VIAN 437
Query: 416 KIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475
T TY L+ + +G + A K+++ M + + P + ++ +LL GL
Sbjct: 438 ------------TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 476 LGRVSDA-EIYRKEKKS 491
G + A EI+ K +KS
Sbjct: 486 NGELEKALEIFGKIEKS 502
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 149/371 (40%), Gaps = 44/371 (11%)
Query: 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210
+ +A D++++MIQ P + L + + +YE L + +M+ G+ +
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 211 ILIEKCCK------AGETRTIILILRYMKE--------NRLALRYPVFKEALQTFKVADE 256
I+I C+ A T I+ L Y + N L L V EAL+
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRV-SEALELV----- 181
Query: 257 NDSLLWQVHPQFSPEFISDN-------------DAVEFVTTDIEG---PLSIDQGLVLIL 300
D ++ H P I+ N DAV + +E P + G VL +
Sbjct: 182 -DRMVEMGH---KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 301 LKKKNLVAID-SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359
+ K A+ LL + +++I+LD+ S II+ C D A F +
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 360 RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419
Y LIG + A+++ +M K S V ++LI + A ++
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357
Query: 420 LLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
+ + T TY +LI + ++A+++ M KG P + TFN+L+ G K
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417
Query: 478 RVSDA-EIYRK 487
R+ D E++R+
Sbjct: 418 RIDDGLELFRE 428
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
SR D +Y +LD + + +F +++ + +D Y ++H + NA VD
Sbjct: 466 SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVD 525
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A +++ + LK +Y + L D + +A ++++M + G P+ TY +L+
Sbjct: 526 DAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213
+ A E+ +M+ +G D + ++I
Sbjct: 586 RAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVI 620
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
+EKA F + +S+ D Y ++ A ++ +F + KG+ +DA Y
Sbjct: 489 LEKALEIFGKIEKSK-MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYN 547
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++ L + A ++ +M + P ++Y ++ +D A ++ +EM
Sbjct: 548 IMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSS 607
Query: 166 GLPPNCYTYTVLMEYL 181
G P + T +++ L
Sbjct: 608 GFPADVSTVKMVINML 623
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 1/188 (0%)
Query: 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTS 106
+A L F+ + + G + TY+ ++D+F ++ + M + G+ + Y S
Sbjct: 384 HEAELLFDRMGKI-GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442
Query: 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166
+++ GD+ A EM K+ PT+V+YT+ M ++ +A +Y EM +G
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502
Query: 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTII 226
+ P+ YT+T L+ L RAG +A+++F++M E V+P++ N++IE C+ G+
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAF 562
Query: 227 LILRYMKE 234
L+ M E
Sbjct: 563 EFLKEMTE 570
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 37/208 (17%)
Query: 51 LFFNWVS--RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVM 108
LFF + RG D YT+M+D + +++LM +G + VTYT+V+
Sbjct: 665 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724
Query: 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND------------------ 150
+ L AG V+ A + +M+ P V+Y ++ IL +
Sbjct: 725 NGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLL 784
Query: 151 -----------------RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193
R++EA+++ MI G+ P+C TYT ++ L R ++A+E+
Sbjct: 785 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844
Query: 194 FSKMQEAGVQPDKAACNILIEKCCKAGE 221
++ M E G++PD+ A N LI CC AGE
Sbjct: 845 WNSMTEKGIRPDRVAYNTLIHGCCVAGE 872
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 197/463 (42%), Gaps = 58/463 (12%)
Query: 52 FFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI---SSMKYVFELMQEKGINIDAVTYTS-- 106
FFN++ RGF+H ++ ++ +A SS+ L K ++ V ++
Sbjct: 90 FFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYE 149
Query: 107 -------------VMHWLSNAGDVDGAVNIWEEMKLK-ECYPTIVSYTAYMKILFLNDRV 152
+ H++ + +DG + +++ M K P + + +A + L
Sbjct: 150 KCKLSSSSSFDLLIQHYVRSRRVLDGVL-VFKMMITKVSLLPEVRTLSALLHGLVKFRHF 208
Query: 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212
A +++ +M+ G+ P+ Y YT ++ L A E+ + M+ G + N+L
Sbjct: 209 GLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVL 268
Query: 213 IEKCCKAGETRTIILILRYMKENRL--------ALRYPVFKEALQTFKVADEN-DSLLWQ 263
I+ CK + + I + + L L Y + K +Q F++ E D +L
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCK--VQEFEIGLEMMDEMLCL 326
Query: 264 VHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323
+FSP + V++ +EG L K+ + +L+ ++D +
Sbjct: 327 ---RFSPSEAA-------VSSLVEG-----------LRKRGKIEEALNLVKRVVDFGVSP 365
Query: 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIV 383
+ V + +I+ C R+ A L F+ K+ L Y LI + + +
Sbjct: 366 NLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFL 425
Query: 384 EEMTKAGHSLGVYLGALLIHRLGSAR-RPVPAAKIFSLLPEDQK---CTATYTALIGVYF 439
EM G L VY LI+ G + + AA+ F ++K TYT+L+G Y
Sbjct: 426 GEMVDTGLKLSVYPYNSLIN--GHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483
Query: 440 SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
S G +KAL++Y M KGI PS+ TF LL+GL + G + DA
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDA 526
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/460 (23%), Positives = 177/460 (38%), Gaps = 62/460 (13%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G D + YT ++ E K +S K + M+ G +++ V Y ++ L V
Sbjct: 220 SVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVW 279
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
AV I +++ K+ P +V+Y + L + ++ EM+ P+ + L+
Sbjct: 280 EAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLV 339
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238
E L + GK EEAL + ++ + GV P+ N LI+ CK + L+ M ++
Sbjct: 340 EGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM--GKIG 397
Query: 239 LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL 298
LR ND VT I L+
Sbjct: 398 LR---------------PND-----------------------VTYSI---------LID 410
Query: 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358
+ ++ L S L ++D ++L +++I +C A + L
Sbjct: 411 MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470
Query: 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIF 418
Y +L+G K + EMT G + +Y L+ L A A K+F
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 419 SLLPE--DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL 476
+ + E + TY +I Y G KA + K M KGI P ++ L+ GL
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLT 590
Query: 477 GRVSDAEIYRKEKKSIQADALSKDAVPMEEKIC--DLLYG 514
G+ S+A+++ D L K + E IC LL+G
Sbjct: 591 GQASEAKVF--------VDGLHKGNCELNE-ICYTGLLHG 621
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/408 (20%), Positives = 168/408 (41%), Gaps = 20/408 (4%)
Query: 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128
Y ++D + +++ + + + K + D VTY ++++ L + + + + +EM
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEML 324
Query: 129 LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188
P+ + ++ ++ L +++EA ++ K ++ G+ PN + Y L++ L + K+
Sbjct: 325 CLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFH 384
Query: 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR-YPVFKEA 247
EA +F +M + G++P+ +ILI+ C+ G+ T + L M + L L YP
Sbjct: 385 EAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY---- 440
Query: 248 LQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLV 307
+ L H +F ++ E + +E + L+ K +
Sbjct: 441 -----------NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKIN 489
Query: 308 AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALI 367
L + K I +T++ A+ F + ++ R Y +I
Sbjct: 490 KALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549
Query: 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427
+ K E ++EMT+ G Y LIH L + AK+F C
Sbjct: 550 EGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ-ASEAKVFVDGLHKGNC 608
Query: 428 TAT---YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472
YT L+ + G ++AL + + M ++G+ L + VL+ G
Sbjct: 609 ELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDG 656
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/424 (20%), Positives = 166/424 (39%), Gaps = 51/424 (12%)
Query: 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120
G + Y ++++ + IS+ + M K + VTYTS+M + G ++ A
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA 491
Query: 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180
+ ++ EM K P+I ++T + LF +++A ++ EM + + PN TY V++E
Sbjct: 492 LRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEG 551
Query: 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALR 240
G +A E +M E G+ PD + LI C G+ + + + + L
Sbjct: 552 YCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611
Query: 241 YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLIL 300
+ L F + + L E V ++ L L+
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQ--------------EMVQRGVDLDLVCYGVLIDGS 657
Query: 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER 360
LK K+ LL + D+ ++ D + +++I+ A ++ +
Sbjct: 658 LKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNE 717
Query: 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSL 420
Y A+I L K F AE+ L S +PV S
Sbjct: 718 VTYTAVINGLCKAG-FVNEAEV----------------------LCSKMQPV------SS 748
Query: 421 LPEDQKCTATYTALIGVYFSAGSAD--KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478
+P TY + + + G D KA++++ + KG+ + T+N+L+ G + GR
Sbjct: 749 VPNQ----VTYGCFLDI-LTKGEVDMQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGR 802
Query: 479 VSDA 482
+ +A
Sbjct: 803 IEEA 806
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 88/213 (41%), Gaps = 41/213 (19%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE---KGINIDAVTYTSVMHWLSNAGD 116
RG + D Y ++D G K K F L++E +G+ D V YTS++ S GD
Sbjct: 641 RGVDLDLVCYGVLID--GSLKH-KDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGD 697
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKIL------------------------------ 146
A IW+ M + C P V+YTA + L
Sbjct: 698 FKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGC 757
Query: 147 FLNDRVKEATDVYKEM-----IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201
FL+ K D+ K + I +GL N TY +L+ R G+ EEA E+ ++M G
Sbjct: 758 FLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDG 817
Query: 202 VQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
V PD +I + C+ + + I + M E
Sbjct: 818 VSPDCITYTTMINELCRRNDVKKAIELWNSMTE 850
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 8/183 (4%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
+G +T+TT+L A I +F M E + + VTY ++ GD+
Sbjct: 500 GKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMS 559
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTY 174
A +EM K P SY + L L + EA V+ + + +G NC Y
Sbjct: 560 KAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKG---NCELNEICY 615
Query: 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
T L+ R GK EEAL + +M + GV D +LI+ K + + +L+ M +
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHD 675
Query: 235 NRL 237
L
Sbjct: 676 RGL 678
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT 105
M+KA N + + G + TY ++ F RI + M G++ D +TYT
Sbjct: 769 MQKAVELHNAILK--GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYT 826
Query: 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR 165
++++ L DV A+ +W M K P V+Y + + + +AT++ EM+++
Sbjct: 827 TMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886
Query: 166 GLPPN 170
GL PN
Sbjct: 887 GLIPN 891
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQE--KGINIDAVTYTSVMHWLSNAGDVDGAVN 122
++ TY LDI + + M+ EL KG+ + TY ++ G ++ A
Sbjct: 751 NQVTYGCFLDILTKGE--VDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASE 808
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
+ M P ++YT + L + VK+A +++ M ++G+ P+ Y L+
Sbjct: 809 LITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCC 868
Query: 183 RAGKYEEALEIFSKMQEAGVQPD 205
AG+ +A E+ ++M G+ P+
Sbjct: 869 VAGEMGKATELRNEMLRQGLIPN 891
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488
TYT +I KA++++ +M KGI P +N L+ G G + A R E
Sbjct: 824 TYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNE 882
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 189/486 (38%), Gaps = 58/486 (11%)
Query: 15 STWDSAQDLLKNLPIKWDSYTVN---QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTT 71
S W +++LK I D T N VL EK+ + +S G+ TY T
Sbjct: 176 SVWSFLKEMLKR-KICPDVATFNILINVLCAEGSFEKSSYLMQKMEKS-GYAPTIVTYNT 233
Query: 72 MLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131
+L + + R + + + M+ KG++ D TY ++H L + + + +M+ +
Sbjct: 234 VLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 293
Query: 132 CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191
+P V+Y + +V A+ + EM+ GL PN T+ L++ + G ++EAL
Sbjct: 294 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 353
Query: 192 EIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA---LRYPVFKEAL 248
++F M+ G+ P + + +L++ CK E MK N + + Y + L
Sbjct: 354 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 413
Query: 249 QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVA 308
DE LL + S + I D D V + L+ K
Sbjct: 414 CKNGFLDEAVVLL----NEMSKDGI-DPDIVTY------------SALINGFCKVGRFKT 456
Query: 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIG 368
++ I + + + ST+I C A+ +E + + + L+
Sbjct: 457 AKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVT 516
Query: 369 ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCT 428
L K + E + MT G +LP T
Sbjct: 517 SLCKAGKVAEAEEFMRCMTSDG-----------------------------ILPN----T 543
Query: 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488
++ LI Y ++G KA ++ M + G HP+ T+ LL GL K G + +AE + K
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603
Query: 489 KKSIQA 494
++ A
Sbjct: 604 LHAVPA 609
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 100/452 (22%), Positives = 172/452 (38%), Gaps = 59/452 (13%)
Query: 55 WVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114
++ ++G +Y +LD + + + M+ G+ + +TYT ++ L
Sbjct: 357 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416
Query: 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTY 174
G +D AV + EM P IV+Y+A + R K A ++ + + GL PN Y
Sbjct: 417 GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476
Query: 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
+ L+ R G +EA+ I+ M G D N+L+ CKAG+ +R M
Sbjct: 477 STLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS 536
Query: 235 NRLALRYPVFK----------EALQTFKVADENDSLLWQVHPQFSP---------EFISD 275
+ + F E L+ F V DE + HP F +
Sbjct: 537 DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV--GHHPTFFTYGSLLKGLCKGGHL 594
Query: 276 NDAVEFVTTDIEGPLSID----QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTI 331
+A +F+ + P ++D L+ + K NL SL ++ +SI DS +++
Sbjct: 595 REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 654
Query: 332 IEVNCDHRRRDGALL-AFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390
I C + A+L A E + ++ + Y + + K + E+M G
Sbjct: 655 ISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLG 714
Query: 391 HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKI 450
H+ P+ T A+I Y G +K +
Sbjct: 715 HT-----------------------------PD----IVTTNAMIDGYSRMGKIEKTNDL 741
Query: 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482
M + P+L T+N+LL G K VS +
Sbjct: 742 LPEMGNQNGGPNLTTYNILLHGYSKRKDVSTS 773
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 29 IKWDSYTVNQVL-KTHPPMEKAWLF-FNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMK 86
++ D YT N ++ K E W F V S G + D+ T M+ + R +
Sbjct: 820 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 879
Query: 87 YVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146
V M ++GI+ ++ Y +++ L GD+ A + EEM + P V+ +A ++ L
Sbjct: 880 MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939
Query: 147 FLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK 206
+ EAT + + M++ L P ++T LM + G EALE+ M G++ D
Sbjct: 940 AKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999
Query: 207 AACNILIEKCCKAGE 221
+ N+LI C G+
Sbjct: 1000 VSYNVLITGLCAKGD 1014
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%)
Query: 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124
++ YT +D +A + + Y E M G D VT +++ S G ++ ++
Sbjct: 683 NKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLL 742
Query: 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184
EM + P + +Y + V + +Y+ +I G+ P+ T L+ + +
Sbjct: 743 PEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICES 802
Query: 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
E L+I GV+ D+ N+LI KCC GE
Sbjct: 803 NMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGE 839
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 10/208 (4%)
Query: 20 AQDLLKNL---PIKWDSYTVNQVL----KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTM 72
A+ LK+L P D+ N +L K+ + LF V RS D +TYT++
Sbjct: 597 AEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS--ILPDSYTYTSL 654
Query: 73 LD-IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131
+ + + K + ++ + E + + V YT + + AG + E+M
Sbjct: 655 ISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLG 714
Query: 132 CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191
P IV+ A + ++++ D+ EM + PN TY +L+ + +
Sbjct: 715 HTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSF 774
Query: 192 EIFSKMQEAGVQPDKAACNILIEKCCKA 219
++ + G+ PDK C+ L+ C++
Sbjct: 775 LLYRSIILNGILPDKLTCHSLVLGICES 802
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 69/167 (41%)
Query: 48 KAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSV 107
KA ++F + G D T M+D + +I + M + + TY +
Sbjct: 701 KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNIL 760
Query: 108 MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL 167
+H S DV + ++ + L P ++ + + + ++ ++ + K I RG+
Sbjct: 761 LHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGV 820
Query: 168 PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214
+ YT+ +L+ G+ A ++ M G+ DK C+ ++
Sbjct: 821 EVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVS 867
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
++TT++ + + + + +M G+ +D V+Y ++ L GD+ A ++EEM
Sbjct: 966 SFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEM 1025
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATD-VYKEMIQRGL 167
K +Y A ++ L + D + K+++ RG
Sbjct: 1026 KGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Query: 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416
N + Y LI + ++ EI M G + VY + LGS +
Sbjct: 120 NSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAI---LGSVVKSGEDVS 176
Query: 417 IFSLLPEDQK---C--TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471
++S L E K C AT+ LI V + GS +K+ + + M + G P++ T+N +L
Sbjct: 177 VWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLH 236
Query: 472 GLEKLGRVSDAEIYRKEKKSIQADA 496
K GR A KS DA
Sbjct: 237 WYCKKGRFKAAIELLDHMKSKGVDA 261
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/501 (22%), Positives = 183/501 (36%), Gaps = 97/501 (19%)
Query: 15 STWDSAQDLLKNLPIKWDSYTVN---QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTT 71
+ W D+ + + IK + YT N VL ++KA F + G TY T
Sbjct: 208 NAWVFYADMYR-MEIKSNVYTFNIMINVLCKEGKLKKAKGFLG-IMEVFGIKPTIVTYNT 265
Query: 72 MLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131
++ F RI + + M+ KG D TY ++ W+ N G A + EMK
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIG 322
Query: 132 CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191
P VSY ++ N ++ A EM+++G+ P YTY L+ L K E A
Sbjct: 323 LVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAE 382
Query: 192 EIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTF 251
+ +++E G+ D NILI C+ G+ + + F
Sbjct: 383 ILIREIREKGIVLDSVTYNILINGYCQHGDAK-------------------------KAF 417
Query: 252 KVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311
+ DE +T I+ L+ +L +K D
Sbjct: 418 ALHDE------------------------MMTDGIQPTQFTYTSLIYVLCRKNKTREADE 453
Query: 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371
L ++ K ++ D +++T+++ +C D A + M +N + Y L+ L
Sbjct: 454 LFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLC 513
Query: 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATY 431
F + E++ EM + G + P+ +Y
Sbjct: 514 GEGKFEEARELMGEMKRRG-----------------------------IKPDH----ISY 540
Query: 432 TALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491
LI Y G A + M G +P+L T+N LL GL K AE +E K
Sbjct: 541 NTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMK- 599
Query: 492 IQADALSKDAVPMEEKICDLL 512
S+ VP + C ++
Sbjct: 600 ------SEGIVPNDSSFCSVI 614
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/444 (21%), Positives = 173/444 (38%), Gaps = 62/444 (13%)
Query: 55 WVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114
++ + +GF T +L + RI + + M I + T+ +++ L
Sbjct: 179 YLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKE 238
Query: 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTY 174
G + A M++ PTIV+Y ++ L R++ A + EM +G P+ TY
Sbjct: 239 GKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTY 298
Query: 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
++ ++ G+ A E+ +M+E G+ PD + NILI C G+ E
Sbjct: 299 NPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDL-----------E 344
Query: 235 NRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294
A R + K+ + P F + N T I G
Sbjct: 345 MAFAYRDEMVKQGM--------------------VPTFYTYN-------TLIHG------ 371
Query: 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM 354
L + + A + L+ I +K I LDS + +I C H A + +
Sbjct: 372 -----LFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTD 426
Query: 355 DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYL------GALLIHRLGSA 408
+ + Y +LI +L + N + E+ E++ G + + G I + A
Sbjct: 427 GIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRA 486
Query: 409 RRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468
+ + S+ P+D TY L+ G ++A ++ M R+GI P ++N
Sbjct: 487 FSLLKEMDMMSINPDD----VTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNT 542
Query: 469 LLAGLEKLGRVSDAEIYRKEKKSI 492
L++G K G A + R E S+
Sbjct: 543 LISGYSKKGDTKHAFMVRDEMLSL 566
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126
+TY T++ +I + + + ++EKGI +D+VTY +++ GD A + +E
Sbjct: 363 YTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDE 422
Query: 127 MKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186
M PT +YT+ + +L ++ +EA +++++++ +G+ P+ LM+ G
Sbjct: 423 MMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGN 482
Query: 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG---ETRTIILILR-------YMKENR 236
+ A + +M + PD N L+ C G E R ++ ++ ++ N
Sbjct: 483 MDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNT 542
Query: 237 LALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGL 296
L Y + F V DE SL F+P ++ N ++ ++ + EG L+ +
Sbjct: 543 LISGYSKKGDTKHAFMVRDEMLSL------GFNPTLLTYNALLKGLSKNQEGELAEE--- 593
Query: 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDS 325
+L +K + +V DS +++ LD+
Sbjct: 594 LLREMKSEGIVPNDSSFCSVIEAMSNLDA 622
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 424 DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD-- 481
+ K T + L+ D+A++ + M KG +P T N +L L +L R+ +
Sbjct: 151 ETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAW 210
Query: 482 ---AEIYRKEKKS 491
A++YR E KS
Sbjct: 211 VFYADMYRMEIKS 223
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 115/495 (23%), Positives = 194/495 (39%), Gaps = 69/495 (13%)
Query: 11 ILKYSTWDSAQDLLKNL--------PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGF 62
+LK D+A+ L+ + P +D V+ MEKA F+ + S G
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCIC--VMSKEGVMEKAKALFDGMIAS-GL 378
Query: 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122
Y ++++ + K + + M+++ I I TY +V+ + ++GD+DGA N
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYN 438
Query: 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182
I +EM C P +V YT +K N R +A V KEM ++G+ P+ + Y L+ L
Sbjct: 439 IVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLS 498
Query: 183 RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242
+A + +EA +M E G++P+ I +A E + +Y+KE R P
Sbjct: 499 KAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD---KYVKEMRECGVLP 555
Query: 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK 302
+ L T GL+ K
Sbjct: 556 --NKVLCT--------------------------------------------GLINEYCK 569
Query: 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA 362
K ++ S ++D+ I D+ + ++ + + D A F + + +
Sbjct: 570 KGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629
Query: 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422
Y LI KL K + I +EM + G + V + +L LG R K LL
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML---LGGFCRSGEIEKAKELLD 686
Query: 423 ED-----QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477
E TY +I Y +G +A +++ M KG+ P + L+ G +L
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN 746
Query: 478 RVSDA-EIYRKEKKS 491
V A I+ KK
Sbjct: 747 DVERAITIFGTNKKG 761
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/429 (20%), Positives = 170/429 (39%), Gaps = 22/429 (5%)
Query: 59 SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118
S G + D TY+ ++D + + + K + M GINI Y + +S G ++
Sbjct: 305 SLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVME 364
Query: 119 GAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178
A +++ M P +Y + ++ V++ ++ EM +R + + YTY ++
Sbjct: 365 KAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVV 424
Query: 179 EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238
+ + +G + A I +M +G +P+ LI+ + + +L+ MKE +A
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 239 ---LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295
Y L K DE S L VE V ++
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFL-----------------VEMVENGLKPNAFTYGA 527
Query: 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD 355
+ ++ + D + + + + + + + +I C + A A+ V
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587
Query: 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415
+ + Y L+ L K + EI EM G + V+ +LI+ A+
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647
Query: 416 KIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473
IF + E+ Y L+G + +G +KA ++ M KG+HP+ T+ ++ G
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707
Query: 474 EKLGRVSDA 482
K G +++A
Sbjct: 708 CKSGDLAEA 716
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 1/165 (0%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
R +G D F+Y +++ F + + +F+ M E+G+ + + Y ++ +G++
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEI 678
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
+ A + +EM +K +P V+Y + + + EA ++ EM +GL P+ + YT L
Sbjct: 679 EKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
++ R E A+ IF + G A N LI K G+T
Sbjct: 739 VDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFKFGKT 782
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 129/605 (21%), Positives = 220/605 (36%), Gaps = 113/605 (18%)
Query: 1 MRDTISNVYKILKYSTWDSAQDLL--KNLPIKWDSYTVNQVLKTHPPMEKAWL--FFNWV 56
+ D + + ILK W +D L NL I+ + V VL++ + + L FFNWV
Sbjct: 31 LSDASAEIAGILKQENW---RDTLVSSNLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWV 87
Query: 57 SRSRGFNH--DRFTYTTM-LDIFGEAKRISSMKYVFELMQEK------------------ 95
+ D F++ + L FG ++ S V E M E+
Sbjct: 88 DSQKVTEQKLDSFSFLALDLCNFGSFEKALS---VVERMIERNWPVAEVWSSIVRCSQEF 144
Query: 96 -GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154
G + D V + + G ++ AV ++ E P + + L +R+
Sbjct: 145 VGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDL 204
Query: 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE---------------------EALEI 193
DVYK M++R + + TY +L+ RAG + AL++
Sbjct: 205 FWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKL 264
Query: 194 FSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL---RYPVFKEALQT 250
M G+ P K ++LI+ CK +L M ++L Y + + L
Sbjct: 265 KESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324
Query: 251 FKVADENDSLLWQVHPQ---------------FSPEFISDNDAVEFVTTDIEGPLSIDQG 295
+ AD L+ ++ S E + + F G + Q
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384
Query: 296 LVLIL---LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352
++ ++KN+ LL + ++I + T+++ C DGA + +
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 353 KMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPV 412
Y LI ++ + F +++EM + G + ++ LI L A+R
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504
Query: 413 PAAKIFSLLPED--QKCTATYTALIGVYFSA---GSADKALK------------------ 449
A + E+ + TY A I Y A SADK +K
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 450 --------------IYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA-EIYRKEK-KSIQ 493
Y++M +GI T+ VL+ GL K +V DA EI+R+ + K I
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 494 ADALS 498
D S
Sbjct: 625 PDVFS 629
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 11/173 (6%)
Query: 63 NHDRF------TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116
+ DRF TY M+D + + + K +F MQ + +TYTS+++ G
Sbjct: 796 SFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGR 855
Query: 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR-----GLPPNC 171
+++E P + Y+ + +A + +M + G +
Sbjct: 856 RAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915
Query: 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224
T L+ + G+ E A ++ M PD A LI + C + R
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRV 968
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Query: 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119
RG + D +TY T++ RI K +F M EK VTYTS+++ L + +VD
Sbjct: 186 RGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDE 245
Query: 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179
A+ EEMK K P + +Y++ M L + R +A ++++ M+ RG PN TYT L+
Sbjct: 246 AMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLIT 305
Query: 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTII-----LILRYMKE 234
L + K +EA+E+ +M G++PD +I C + R +IL +
Sbjct: 306 GLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITP 365
Query: 235 NRL 237
NRL
Sbjct: 366 NRL 368
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147
+F M ++G + D+ TY +++ L G +D A ++ EM K+C PT+V+YT+ + L
Sbjct: 179 IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLC 238
Query: 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA 207
+ V EA +EM +G+ PN +TY+ LM+ L + G+ +A+E+F M G +P+
Sbjct: 239 GSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV 298
Query: 208 ACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKE------ALQTFKVA----DE- 256
LI CK + + + +L M L ++ + A+ F+ A DE
Sbjct: 299 TYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
Query: 257 ------NDSLLWQVHPQFSPEFI 273
+ L W +H + S E +
Sbjct: 359 ILGGITPNRLTWNIHVKTSNEVV 381
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%)
Query: 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127
TYT++++ +K + E M+ KGI + TY+S+M L G A+ ++E M
Sbjct: 229 TYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMM 288
Query: 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187
+ C P +V+YT + L +++EA ++ M +GL P+ Y ++ K+
Sbjct: 289 MARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKF 348
Query: 188 EEALEIFSKMQEAGVQPDKAACNILIE 214
EA +M G+ P++ NI ++
Sbjct: 349 REAANFLDEMILGGITPNRLTWNIHVK 375
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 106/225 (47%), Gaps = 14/225 (6%)
Query: 8 VYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVL-------KTHPPMEKAWLFFNWVSRSR 60
V +++ + + +A+DL+ + I+ + + +L + H P + +F + +
Sbjct: 58 VLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVF----HKMK 113
Query: 61 GFNHD--RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS-NAGDV 117
F+ D + Y T+L I E +++ ++ M+E G+ + ++ L N G V
Sbjct: 114 DFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTV 173
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
D + I+ EM + C P +Y + L R+ EA ++ EM+++ P TYT L
Sbjct: 174 DAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSL 233
Query: 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222
+ L + +EA+ +M+ G++P+ + L++ CK G +
Sbjct: 234 INGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRS 278
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117
+S+G + FTY++++D + R +FE+M +G + VTYT+++ L +
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177
AV + + M L+ P Y + + +EA + EMI G+ PN T+ +
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 178 MEY---LVR---AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221
++ +VR A A ++ M+ G+ + L++ CK GE
Sbjct: 374 VKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGE 423
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 4/160 (2%)
Query: 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT 135
+G R VF M++ + Y +V+ L ++ A ++ M+ PT
Sbjct: 96 YGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPT 155
Query: 136 IVSYTAYMKILFLND-RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIF 194
+ S +K L ND V ++ EM +RG P+ YTY L+ L R G+ +EA ++F
Sbjct: 156 VASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLF 215
Query: 195 SKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234
++M E P LI C ++ + +RY++E
Sbjct: 216 TEMVEKDCAPTVVTYTSLINGLCG---SKNVDEAMRYLEE 252
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 346 LAFEYSVKM-DLNLERTAYLALIGILIKL-----NTFPKVAEIVEEMTKAGHSLGVYLGA 399
LAF++ M ++ L T +A + +LIK T +I EM K G Y
Sbjct: 139 LAFKFYKNMREIGLPPT--VASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYG 196
Query: 400 LLIHRLGSARRPVPAAKIFSLLPEDQKCT---ATYTALIGVYFSAGSADKALKIYKTMCR 456
LI L R A K+F+ + E + C TYT+LI + + D+A++ + M
Sbjct: 197 TLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKS 255
Query: 457 KGIHPSLGTFNVLLAGLEKLGR 478
KGI P++ T++ L+ GL K GR
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGR 277
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDA 501
G+ D LKI+ M ++G P T+ L++GL + GR+ +A K + + + KD
Sbjct: 171 GTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEA-------KKLFTEMVEKDC 223
Query: 502 VP 503
P
Sbjct: 224 AP 225
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 406 GSARRPVPAAKIFSLLPEDQKCTAT---YTALIGVYFSAGSADKALKIYKTMCRKGIHPS 462
G RP + ++F + +D C + Y ++ + + A K YK M G+ P+
Sbjct: 97 GRVHRPFDSLRVFHKM-KDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPT 155
Query: 463 LGTFNVLLAGLEKLGRVSDA 482
+ + NVL+ L + DA
Sbjct: 156 VASLNVLIKALCRNDGTVDA 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,075,923
Number of Sequences: 539616
Number of extensions: 7621946
Number of successful extensions: 26772
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 20217
Number of HSP's gapped (non-prelim): 3912
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)