Query 010057
Match_columns 519
No_of_seqs 494 out of 2444
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 20:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-66 2.3E-71 524.1 53.0 487 3-511 372-892 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.6E-65 3.4E-70 515.7 53.8 474 8-502 413-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-64 2.9E-69 519.2 45.0 479 8-516 128-640 (857)
4 PLN03081 pentatricopeptide (PP 100.0 5.4E-61 1.2E-65 481.1 47.1 459 4-492 90-557 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6E-61 1.3E-65 492.2 45.7 472 6-516 157-672 (857)
6 PLN03081 pentatricopeptide (PP 100.0 7.6E-59 1.6E-63 465.6 40.4 456 28-516 82-543 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-26 8.4E-31 240.8 52.7 467 10-489 406-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-25 3.3E-30 236.3 52.0 492 7-515 369-885 (899)
9 PRK11788 tetratricopeptide rep 99.9 4.4E-21 9.6E-26 181.2 33.3 310 75-479 44-363 (389)
10 PRK11447 cellulose synthase su 99.9 2E-18 4.4E-23 182.7 52.3 477 6-490 117-738 (1157)
11 PRK11447 cellulose synthase su 99.9 8.1E-19 1.8E-23 185.7 47.1 433 11-465 279-749 (1157)
12 PRK11788 tetratricopeptide rep 99.9 6.5E-20 1.4E-24 173.3 32.8 299 108-491 42-346 (389)
13 PRK15174 Vi polysaccharide exp 99.9 6.1E-18 1.3E-22 167.4 43.5 98 324-424 283-381 (656)
14 PRK15174 Vi polysaccharide exp 99.9 6.7E-18 1.5E-22 167.2 42.2 332 69-457 45-381 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 1.9E-18 4.1E-23 156.2 32.2 429 4-496 51-489 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-17 6.1E-22 163.4 44.1 256 185-494 308-573 (615)
17 PRK14574 hmsH outer membrane p 99.8 3.5E-16 7.6E-21 155.4 46.6 436 43-497 47-518 (822)
18 KOG4422 Uncharacterized conser 99.8 7.2E-17 1.6E-21 139.8 35.4 408 35-492 118-590 (625)
19 PRK10049 pgaA outer membrane p 99.8 8.6E-17 1.9E-21 162.8 42.0 408 33-497 18-461 (765)
20 PRK09782 bacteriophage N4 rece 99.8 5.1E-16 1.1E-20 157.4 47.1 194 299-498 518-712 (987)
21 KOG4626 O-linked N-acetylgluco 99.8 3.2E-17 6.9E-22 148.4 28.5 379 36-481 122-508 (966)
22 KOG4422 Uncharacterized conser 99.8 2.1E-15 4.6E-20 130.8 38.1 411 7-474 121-607 (625)
23 PRK09782 bacteriophage N4 rece 99.8 1.5E-15 3.3E-20 154.0 43.7 475 9-496 86-676 (987)
24 PRK10049 pgaA outer membrane p 99.8 7.1E-16 1.5E-20 156.2 40.1 407 6-473 20-470 (765)
25 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-15 5.6E-20 149.5 40.8 372 69-495 130-540 (615)
26 PRK14574 hmsH outer membrane p 99.8 1.6E-14 3.4E-19 143.7 43.2 407 76-499 44-486 (822)
27 KOG2002 TPR-containing nuclear 99.7 1.3E-13 2.9E-18 131.8 36.9 428 45-496 251-749 (1018)
28 KOG2002 TPR-containing nuclear 99.6 7.4E-11 1.6E-15 113.5 41.5 484 5-512 168-726 (1018)
29 KOG2003 TPR repeat-containing 99.6 5.5E-12 1.2E-16 110.8 30.1 428 45-479 216-710 (840)
30 PRK10747 putative protoheme IX 99.6 5.2E-12 1.1E-16 118.2 31.0 294 114-496 97-394 (398)
31 PRK10747 putative protoheme IX 99.6 1.1E-11 2.5E-16 115.9 32.2 284 79-457 97-390 (398)
32 KOG0495 HAT repeat protein [RN 99.6 7.6E-10 1.7E-14 102.0 41.7 381 15-420 390-778 (913)
33 KOG2076 RNA polymerase III tra 99.6 9.8E-11 2.1E-15 111.8 37.2 352 42-422 151-510 (895)
34 PF13429 TPR_15: Tetratricopep 99.6 3.1E-14 6.7E-19 127.3 13.2 158 73-234 15-174 (280)
35 KOG1915 Cell cycle control pro 99.6 1.4E-09 3E-14 96.6 40.5 392 11-457 117-536 (677)
36 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.3E-19 130.3 9.3 159 330-490 115-275 (280)
37 TIGR00540 hemY_coli hemY prote 99.6 4.2E-11 9.2E-16 112.8 33.5 119 78-201 96-217 (409)
38 TIGR00540 hemY_coli hemY prote 99.6 3.2E-11 7E-16 113.6 32.2 292 112-491 95-398 (409)
39 KOG0495 HAT repeat protein [RN 99.5 1.2E-08 2.6E-13 94.4 45.9 463 6-496 411-884 (913)
40 KOG2076 RNA polymerase III tra 99.5 5.2E-10 1.1E-14 107.0 37.5 327 113-490 151-510 (895)
41 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.7E-15 99.6 30.9 292 114-491 97-389 (400)
42 KOG1915 Cell cycle control pro 99.5 2.6E-09 5.6E-14 94.9 37.9 431 44-494 87-538 (677)
43 COG3071 HemY Uncharacterized e 99.5 2.4E-10 5.2E-15 99.4 30.6 300 79-463 97-396 (400)
44 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.5E-16 114.3 22.8 143 81-231 334-480 (638)
45 COG2956 Predicted N-acetylgluc 99.5 1.9E-10 4.2E-15 96.9 27.9 290 79-457 48-347 (389)
46 KOG1155 Anaphase-promoting com 99.5 2.4E-09 5.2E-14 94.9 35.9 197 292-491 332-535 (559)
47 KOG2003 TPR repeat-containing 99.5 9.3E-11 2E-15 103.2 27.2 417 69-495 204-692 (840)
48 KOG4318 Bicoid mRNA stability 99.5 6.4E-11 1.4E-15 112.6 26.8 86 322-410 201-286 (1088)
49 COG2956 Predicted N-acetylgluc 99.5 4.1E-10 8.8E-15 95.0 28.3 288 114-489 48-344 (389)
50 KOG1126 DNA-binding cell divis 99.5 1.5E-11 3.3E-16 113.5 21.0 286 116-498 334-626 (638)
51 KOG4318 Bicoid mRNA stability 99.5 1.6E-10 3.4E-15 110.0 28.1 125 364-491 463-593 (1088)
52 KOG1155 Anaphase-promoting com 99.4 9.6E-10 2.1E-14 97.3 30.0 260 177-492 233-495 (559)
53 PF13041 PPR_2: PPR repeat fam 99.4 3.4E-13 7.4E-18 84.2 6.3 49 134-182 1-49 (50)
54 PF13041 PPR_2: PPR repeat fam 99.4 8.7E-13 1.9E-17 82.4 6.7 50 169-218 1-50 (50)
55 KOG3785 Uncharacterized conser 99.4 4.2E-09 9.1E-14 90.1 30.3 207 283-495 278-493 (557)
56 KOG2047 mRNA splicing factor [ 99.3 7.2E-08 1.6E-12 89.2 36.7 471 6-494 107-689 (835)
57 KOG0547 Translocase of outer m 99.3 2.4E-09 5.1E-14 95.5 24.8 221 182-457 337-566 (606)
58 KOG2047 mRNA splicing factor [ 99.3 2.8E-07 6E-12 85.5 38.4 444 37-490 109-613 (835)
59 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 95.8 22.0 157 334-492 74-232 (234)
60 KOG1129 TPR repeat-containing 99.3 9.2E-10 2E-14 93.0 18.6 238 140-499 227-465 (478)
61 KOG1173 Anaphase-promoting com 99.3 6.5E-08 1.4E-12 88.2 31.2 461 6-496 21-522 (611)
62 KOG0547 Translocase of outer m 99.2 2.1E-08 4.5E-13 89.7 26.4 157 336-495 337-494 (606)
63 KOG1840 Kinesin light chain [C 99.2 3.1E-09 6.7E-14 99.3 22.5 244 171-491 199-478 (508)
64 KOG1156 N-terminal acetyltrans 99.2 1.1E-07 2.4E-12 88.2 32.0 441 6-456 12-510 (700)
65 PRK12370 invasion protein regu 99.2 1.5E-08 3.2E-13 99.5 28.4 146 82-232 320-467 (553)
66 PRK12370 invasion protein regu 99.2 1.6E-08 3.4E-13 99.3 28.6 162 325-492 372-535 (553)
67 TIGR02521 type_IV_pilW type IV 99.2 1.8E-08 3.9E-13 87.9 26.2 187 43-234 44-231 (234)
68 KOG2376 Signal recognition par 99.2 4.7E-07 1E-11 83.2 35.1 459 2-489 13-517 (652)
69 KOG1129 TPR repeat-containing 99.2 3.1E-09 6.8E-14 89.9 18.1 131 103-238 225-356 (478)
70 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.9E-13 95.1 24.2 242 136-455 199-477 (508)
71 PF12569 NARP1: NMDA receptor- 99.2 3.5E-07 7.6E-12 86.9 33.8 152 37-197 11-169 (517)
72 KOG1174 Anaphase-promoting com 99.1 1.6E-06 3.4E-11 76.3 32.5 158 334-495 343-503 (564)
73 KOG1156 N-terminal acetyltrans 99.1 1.4E-06 3E-11 81.1 33.0 400 36-502 11-444 (700)
74 PF12569 NARP1: NMDA receptor- 99.1 1.7E-07 3.7E-12 89.0 28.0 421 4-488 7-516 (517)
75 KOG1173 Anaphase-promoting com 99.1 1.1E-06 2.4E-11 80.4 29.2 131 100-234 243-374 (611)
76 KOG4340 Uncharacterized conser 99.0 1E-06 2.2E-11 74.1 24.2 190 299-494 250-445 (459)
77 PRK11189 lipoprotein NlpI; Pro 99.0 1.3E-06 2.9E-11 78.4 26.9 151 44-198 40-192 (296)
78 KOG4162 Predicted calmodulin-b 99.0 2.5E-05 5.5E-10 74.6 35.7 130 363-494 653-785 (799)
79 KOG3785 Uncharacterized conser 98.9 9.3E-06 2E-10 70.2 29.0 112 8-126 29-146 (557)
80 COG3063 PilF Tfp pilus assembl 98.9 1.4E-06 3.1E-11 70.7 22.5 189 68-260 37-226 (250)
81 PRK11189 lipoprotein NlpI; Pro 98.9 4.5E-07 9.7E-12 81.4 21.7 229 148-470 38-277 (296)
82 KOG2376 Signal recognition par 98.9 2.9E-05 6.2E-10 71.9 32.7 420 8-454 53-517 (652)
83 COG3063 PilF Tfp pilus assembl 98.9 5.9E-07 1.3E-11 72.8 19.4 199 294-495 39-239 (250)
84 cd05804 StaR_like StaR_like; a 98.9 2.3E-05 4.9E-10 73.2 33.6 162 68-234 8-176 (355)
85 KOG1174 Anaphase-promoting com 98.9 1.7E-05 3.6E-10 70.1 29.4 134 97-234 228-362 (564)
86 KOG4162 Predicted calmodulin-b 98.9 8.3E-05 1.8E-09 71.2 35.6 358 125-495 312-752 (799)
87 PF04733 Coatomer_E: Coatomer 98.9 7.1E-08 1.5E-12 85.2 14.9 155 331-495 108-268 (290)
88 PRK04841 transcriptional regul 98.8 2.5E-05 5.4E-10 82.8 35.0 378 69-493 344-761 (903)
89 PF12854 PPR_1: PPR repeat 98.8 6.4E-09 1.4E-13 58.0 4.0 31 167-197 3-33 (34)
90 cd05804 StaR_like StaR_like; a 98.8 3.6E-05 7.8E-10 71.9 31.5 302 102-492 7-336 (355)
91 PF12854 PPR_1: PPR repeat 98.8 7.5E-09 1.6E-13 57.7 3.9 32 131-162 2-33 (34)
92 KOG3617 WD40 and TPR repeat-co 98.8 0.00017 3.6E-09 69.7 34.1 409 43-495 813-1362(1416)
93 PF04733 Coatomer_E: Coatomer 98.7 6.1E-07 1.3E-11 79.3 15.8 146 78-234 13-159 (290)
94 KOG1914 mRNA cleavage and poly 98.7 0.0002 4.3E-09 65.9 36.6 424 30-494 17-503 (656)
95 KOG3617 WD40 and TPR repeat-co 98.7 8E-05 1.7E-09 71.8 30.0 183 32-234 725-940 (1416)
96 KOG0985 Vesicle coat protein c 98.7 0.00022 4.8E-09 70.4 32.2 187 12-231 1059-1245(1666)
97 KOG3616 Selective LIM binding 98.7 0.00011 2.3E-09 70.0 29.1 167 297-486 739-905 (1636)
98 KOG1128 Uncharacterized conser 98.7 1.5E-06 3.3E-11 82.1 16.8 197 292-499 426-623 (777)
99 KOG0624 dsRNA-activated protei 98.7 0.00016 3.5E-09 62.5 27.0 310 139-496 41-374 (504)
100 KOG4340 Uncharacterized conser 98.6 1.2E-05 2.6E-10 67.9 19.8 81 405-487 251-334 (459)
101 KOG3616 Selective LIM binding 98.6 5.6E-05 1.2E-09 71.9 26.2 367 44-488 746-1130(1636)
102 PRK04841 transcriptional regul 98.6 0.00016 3.4E-09 76.9 32.4 338 76-458 384-761 (903)
103 KOG1070 rRNA processing protei 98.6 6.5E-05 1.4E-09 76.5 26.9 133 100-235 1457-1593(1710)
104 KOG1125 TPR repeat-containing 98.6 1E-05 2.2E-10 74.7 19.7 259 146-486 295-565 (579)
105 TIGR03302 OM_YfiO outer membra 98.5 4.9E-06 1.1E-10 72.5 16.2 62 433-494 171-234 (235)
106 KOG0548 Molecular co-chaperone 98.5 0.0008 1.7E-08 62.1 30.0 404 9-475 10-471 (539)
107 KOG0624 dsRNA-activated protei 98.5 0.00054 1.2E-08 59.4 28.6 186 42-236 50-253 (504)
108 TIGR03302 OM_YfiO outer membra 98.5 3.1E-05 6.8E-10 67.4 20.3 170 64-235 31-232 (235)
109 KOG1070 rRNA processing protei 98.5 6.2E-05 1.3E-09 76.7 23.7 162 326-488 1531-1696(1710)
110 PRK10370 formate-dependent nit 98.5 1.5E-05 3.2E-10 66.6 16.7 155 297-466 23-181 (198)
111 KOG0985 Vesicle coat protein c 98.5 0.002 4.2E-08 64.1 40.9 218 6-231 486-749 (1666)
112 KOG1125 TPR repeat-containing 98.5 8.9E-05 1.9E-09 68.7 22.4 200 30-236 285-494 (579)
113 KOG3081 Vesicle coat complex C 98.5 0.00011 2.3E-09 61.4 20.6 175 311-495 94-274 (299)
114 PLN02789 farnesyltranstransfer 98.5 0.00016 3.5E-09 65.0 23.4 203 11-219 47-268 (320)
115 PLN02789 farnesyltranstransfer 98.4 0.00026 5.6E-09 63.7 24.3 50 425-475 214-267 (320)
116 TIGR00756 PPR pentatricopeptid 98.4 4.9E-07 1.1E-11 51.5 4.6 35 429-463 1-35 (35)
117 COG5010 TadD Flp pilus assembl 98.4 0.00018 4E-09 60.0 20.6 164 63-231 63-227 (257)
118 KOG0548 Molecular co-chaperone 98.4 0.00063 1.4E-08 62.7 25.8 196 295-494 229-457 (539)
119 PRK10370 formate-dependent nit 98.4 5.7E-05 1.2E-09 63.1 17.9 115 46-164 55-172 (198)
120 PRK14720 transcript cleavage f 98.4 0.00035 7.6E-09 70.5 25.5 240 62-406 26-268 (906)
121 PRK15359 type III secretion sy 98.4 2.7E-06 6E-11 67.0 9.0 95 401-496 30-125 (144)
122 PF13812 PPR_3: Pentatricopept 98.3 9.7E-07 2.1E-11 49.8 4.5 33 429-461 2-34 (34)
123 PRK14720 transcript cleavage f 98.3 0.00068 1.5E-08 68.5 26.9 167 33-238 31-201 (906)
124 KOG1128 Uncharacterized conser 98.3 0.00024 5.1E-09 67.8 21.8 86 299-387 528-614 (777)
125 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.7E-11 49.8 4.6 33 138-170 2-34 (35)
126 PF13812 PPR_3: Pentatricopept 98.3 1.7E-06 3.6E-11 48.8 4.3 32 138-169 3-34 (34)
127 COG5010 TadD Flp pilus assembl 98.3 7.1E-05 1.5E-09 62.4 15.1 156 329-487 70-226 (257)
128 PF08579 RPM2: Mitochondrial r 98.2 2.1E-05 4.6E-10 56.2 9.8 67 115-181 39-114 (120)
129 PF08579 RPM2: Mitochondrial r 98.2 2.1E-05 4.6E-10 56.2 9.7 80 69-148 28-116 (120)
130 PRK15359 type III secretion sy 98.2 0.00015 3.3E-09 57.1 15.7 92 106-199 29-120 (144)
131 PF07079 DUF1347: Protein of u 98.2 0.0041 8.8E-08 56.4 33.5 438 9-468 14-530 (549)
132 PRK15179 Vi polysaccharide bio 98.2 6.9E-05 1.5E-09 74.5 16.7 140 357-498 83-223 (694)
133 PF10037 MRP-S27: Mitochondria 98.2 4.8E-05 1E-09 70.0 14.4 124 96-219 61-186 (429)
134 KOG1127 TPR repeat-containing 98.2 0.0041 8.9E-08 61.9 27.7 148 44-197 506-656 (1238)
135 TIGR02552 LcrH_SycD type III s 98.2 1.1E-05 2.5E-10 63.2 9.2 96 399-495 21-117 (135)
136 KOG2053 Mitochondrial inherita 98.2 0.0082 1.8E-07 59.2 38.2 229 5-238 13-258 (932)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4E-09 66.0 16.2 126 102-234 170-296 (395)
138 PRK15179 Vi polysaccharide bio 98.1 0.00088 1.9E-08 66.8 22.0 146 63-212 83-228 (694)
139 KOG3081 Vesicle coat complex C 98.1 0.0012 2.5E-08 55.4 18.9 150 74-234 116-270 (299)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.6E-09 58.0 13.1 124 328-452 15-142 (145)
141 COG4783 Putative Zn-dependent 98.1 0.00055 1.2E-08 62.4 18.3 118 370-489 316-434 (484)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4.1E-09 65.9 15.6 127 66-199 169-296 (395)
143 PF01535 PPR: PPR repeat; Int 98.1 5.8E-06 1.3E-10 45.4 3.7 31 429-459 1-31 (31)
144 PF10037 MRP-S27: Mitochondria 98.1 5.5E-05 1.2E-09 69.7 11.8 124 61-184 61-186 (429)
145 TIGR02552 LcrH_SycD type III s 98.1 0.00032 7E-09 54.9 14.9 94 69-164 20-113 (135)
146 COG4783 Putative Zn-dependent 98.0 0.001 2.2E-08 60.8 18.0 178 15-199 251-436 (484)
147 PF09976 TPR_21: Tetratricopep 98.0 0.00083 1.8E-08 53.2 15.6 85 144-230 56-142 (145)
148 PF01535 PPR: PPR repeat; Int 98.0 1.3E-05 2.9E-10 43.9 3.7 28 138-165 2-29 (31)
149 KOG1127 TPR repeat-containing 97.9 0.028 6.2E-07 56.3 29.2 420 44-486 472-946 (1238)
150 KOG3060 Uncharacterized conser 97.9 0.0022 4.7E-08 53.5 17.5 172 321-495 47-223 (289)
151 PF06239 ECSIT: Evolutionarily 97.9 0.00044 9.6E-09 56.3 12.1 35 152-186 119-153 (228)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00014 2.9E-09 55.5 8.8 65 430-494 41-107 (119)
153 cd00189 TPR Tetratricopeptide 97.8 0.00011 2.4E-09 53.3 8.1 94 400-494 5-99 (100)
154 KOG3060 Uncharacterized conser 97.8 0.016 3.4E-07 48.6 23.6 189 44-237 26-222 (289)
155 PF06239 ECSIT: Evolutionarily 97.8 0.00069 1.5E-08 55.3 12.1 116 100-234 46-167 (228)
156 PF14938 SNAP: Soluble NSF att 97.7 0.0073 1.6E-07 54.0 19.2 76 299-390 103-185 (282)
157 PF13414 TPR_11: TPR repeat; P 97.7 9.5E-05 2.1E-09 49.8 5.2 66 428-494 3-69 (69)
158 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0026 5.5E-08 48.4 13.7 98 103-200 4-105 (119)
159 PF05843 Suf: Suppressor of fo 97.6 0.0022 4.8E-08 57.0 14.1 129 68-199 3-135 (280)
160 cd00189 TPR Tetratricopeptide 97.6 0.0022 4.9E-08 46.1 11.8 89 142-232 6-94 (100)
161 PF12895 Apc3: Anaphase-promot 97.6 4.4E-05 9.6E-10 53.8 2.1 78 409-488 3-83 (84)
162 PF12895 Apc3: Anaphase-promot 97.5 0.00011 2.3E-09 51.8 4.0 81 373-453 2-83 (84)
163 PF13432 TPR_16: Tetratricopep 97.5 0.00025 5.5E-09 47.0 5.2 61 434-495 3-63 (65)
164 PRK02603 photosystem I assembl 97.5 0.0095 2.1E-07 48.7 15.5 90 66-156 35-126 (172)
165 PF14938 SNAP: Soluble NSF att 97.5 0.0022 4.8E-08 57.3 12.6 184 332-516 42-249 (282)
166 PRK10866 outer membrane biogen 97.5 0.052 1.1E-06 47.0 20.4 155 76-233 42-239 (243)
167 PF05843 Suf: Suppressor of fo 97.5 0.0051 1.1E-07 54.7 14.6 131 102-235 2-136 (280)
168 PRK15363 pathogenicity island 97.5 0.00084 1.8E-08 52.2 8.3 88 405-493 45-133 (157)
169 PRK10153 DNA-binding transcrip 97.4 0.0035 7.6E-08 60.6 13.9 138 355-495 332-485 (517)
170 KOG2796 Uncharacterized conser 97.4 0.044 9.6E-07 46.2 17.5 141 327-469 179-325 (366)
171 CHL00033 ycf3 photosystem I as 97.4 0.0069 1.5E-07 49.4 13.3 95 101-196 35-138 (168)
172 PLN03088 SGT1, suppressor of 97.4 0.002 4.3E-08 59.6 11.1 101 370-473 12-113 (356)
173 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.12 2.5E-06 47.4 30.5 420 63-494 39-533 (660)
174 KOG2053 Mitochondrial inherita 97.3 0.22 4.8E-06 49.7 41.9 190 8-201 50-256 (932)
175 KOG0553 TPR repeat-containing 97.3 0.0018 4E-08 55.4 9.1 127 334-462 90-220 (304)
176 CHL00033 ycf3 photosystem I as 97.3 0.0076 1.7E-07 49.1 12.6 115 47-162 16-139 (168)
177 PLN03088 SGT1, suppressor of 97.3 0.013 2.8E-07 54.2 15.1 89 109-199 10-98 (356)
178 PRK15363 pathogenicity island 97.3 0.0094 2E-07 46.5 11.7 88 75-164 44-131 (157)
179 PRK10866 outer membrane biogen 97.3 0.044 9.5E-07 47.5 17.4 152 44-199 46-240 (243)
180 PRK02603 photosystem I assembl 97.2 0.024 5.2E-07 46.4 15.0 86 101-187 35-122 (172)
181 KOG2041 WD40 repeat protein [G 97.2 0.22 4.7E-06 48.3 24.6 149 63-232 689-848 (1189)
182 KOG0553 TPR repeat-containing 97.2 0.00096 2.1E-08 57.1 6.4 102 369-473 90-192 (304)
183 COG4700 Uncharacterized protei 97.2 0.058 1.2E-06 43.0 15.4 126 356-483 85-213 (251)
184 PRK10153 DNA-binding transcrip 97.2 0.031 6.7E-07 54.2 17.2 67 170-238 419-485 (517)
185 KOG2280 Vacuolar assembly/sort 97.2 0.29 6.3E-06 47.9 27.3 115 322-453 681-795 (829)
186 PF10300 DUF3808: Protein of u 97.1 0.022 4.8E-07 54.7 15.5 178 328-509 191-392 (468)
187 PF14559 TPR_19: Tetratricopep 97.1 0.0018 4E-08 43.3 6.1 24 104-127 28-51 (68)
188 KOG1914 mRNA cleavage and poly 97.1 0.24 5.3E-06 46.5 36.6 420 10-480 28-527 (656)
189 PF13371 TPR_9: Tetratricopept 97.1 0.0016 3.5E-08 44.3 5.9 59 436-495 3-61 (73)
190 PF14559 TPR_19: Tetratricopep 97.1 0.00099 2.1E-08 44.6 4.6 56 439-495 2-57 (68)
191 KOG1538 Uncharacterized conser 97.1 0.18 3.9E-06 48.3 20.4 93 134-231 554-657 (1081)
192 PF13432 TPR_16: Tetratricopep 97.1 0.0011 2.4E-08 43.8 4.6 57 401-457 3-60 (65)
193 PRK10803 tol-pal system protei 97.1 0.0035 7.5E-08 54.7 8.6 27 363-389 146-172 (263)
194 PF03704 BTAD: Bacterial trans 97.0 0.016 3.6E-07 45.8 11.9 58 69-127 65-122 (146)
195 COG4235 Cytochrome c biogenesi 97.0 0.029 6.4E-07 48.5 13.5 112 357-471 153-268 (287)
196 PF04840 Vps16_C: Vps16, C-ter 97.0 0.27 5.7E-06 44.5 23.8 46 178-227 184-229 (319)
197 PF12688 TPR_5: Tetratrico pep 96.9 0.094 2E-06 39.4 14.2 19 145-163 47-65 (120)
198 PF03704 BTAD: Bacterial trans 96.9 0.037 7.9E-07 43.8 12.9 69 139-208 65-138 (146)
199 PF13525 YfiO: Outer membrane 96.9 0.086 1.9E-06 44.4 15.6 49 177-225 147-197 (203)
200 PF12688 TPR_5: Tetratrico pep 96.9 0.1 2.2E-06 39.2 13.9 105 142-252 7-117 (120)
201 PF12921 ATP13: Mitochondrial 96.8 0.036 7.7E-07 42.1 11.1 57 165-221 46-103 (126)
202 KOG1538 Uncharacterized conser 96.8 0.25 5.5E-06 47.4 18.5 87 362-457 749-846 (1081)
203 PF13281 DUF4071: Domain of un 96.8 0.43 9.4E-06 43.7 22.4 170 67-238 142-337 (374)
204 PF13424 TPR_12: Tetratricopep 96.8 0.0021 4.6E-08 44.4 4.0 65 428-492 5-75 (78)
205 PRK10803 tol-pal system protei 96.7 0.061 1.3E-06 47.1 13.1 100 137-238 144-249 (263)
206 PF12921 ATP13: Mitochondrial 96.6 0.039 8.4E-07 41.9 10.1 99 65-183 1-100 (126)
207 PF04840 Vps16_C: Vps16, C-ter 96.6 0.54 1.2E-05 42.6 26.9 79 358-450 206-284 (319)
208 KOG2796 Uncharacterized conser 96.6 0.11 2.4E-06 43.9 13.1 149 83-239 166-319 (366)
209 KOG2114 Vacuolar assembly/sort 96.5 1.1 2.3E-05 44.9 26.4 175 3-198 336-517 (933)
210 COG4235 Cytochrome c biogenesi 96.5 0.23 5.1E-06 43.2 15.1 99 100-200 155-256 (287)
211 PF13414 TPR_11: TPR repeat; P 96.5 0.022 4.7E-07 38.1 7.5 61 172-233 4-65 (69)
212 PF13525 YfiO: Outer membrane 96.3 0.46 9.9E-06 40.0 16.0 48 142-191 147-198 (203)
213 KOG3941 Intermediate in Toll s 96.3 0.042 9E-07 46.8 9.1 116 63-198 64-186 (406)
214 PF13371 TPR_9: Tetratricopept 96.2 0.013 2.7E-07 39.8 5.3 62 403-466 3-65 (73)
215 COG4700 Uncharacterized protei 96.2 0.48 1E-05 38.0 18.5 133 98-232 86-219 (251)
216 PRK15331 chaperone protein Sic 96.2 0.07 1.5E-06 42.0 9.5 84 407-491 49-133 (165)
217 KOG1258 mRNA processing protei 96.1 1.3 2.9E-05 42.5 27.4 365 16-443 60-490 (577)
218 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.03 6.4E-07 51.7 8.1 63 428-492 75-141 (453)
219 KOG3941 Intermediate in Toll s 96.1 0.14 3.1E-06 43.7 11.4 117 99-234 65-187 (406)
220 KOG1130 Predicted G-alpha GTPa 96.1 0.27 5.8E-06 44.6 13.5 51 74-125 25-79 (639)
221 KOG0550 Molecular chaperone (D 96.1 1.1 2.4E-05 40.9 19.2 270 75-390 58-351 (486)
222 COG4105 ComL DNA uptake lipopr 96.0 0.88 1.9E-05 38.8 20.4 60 176-236 172-234 (254)
223 PF13281 DUF4071: Domain of un 96.0 0.5 1.1E-05 43.3 15.2 32 463-494 305-336 (374)
224 PF09205 DUF1955: Domain of un 95.9 0.18 3.8E-06 37.8 9.9 115 11-132 12-151 (161)
225 KOG1130 Predicted G-alpha GTPa 95.9 0.48 1E-05 43.0 14.3 130 327-456 197-343 (639)
226 PF10300 DUF3808: Protein of u 95.8 0.7 1.5E-05 44.6 16.7 163 69-234 191-375 (468)
227 smart00299 CLH Clathrin heavy 95.7 0.74 1.6E-05 36.0 14.0 109 330-453 12-121 (140)
228 PF13424 TPR_12: Tetratricopep 95.7 0.042 9E-07 37.8 6.0 60 103-162 7-72 (78)
229 KOG1920 IkappaB kinase complex 95.6 3.7 7.9E-05 43.1 24.6 104 333-454 947-1052(1265)
230 COG4105 ComL DNA uptake lipopr 95.5 1.4 3.1E-05 37.6 17.2 62 433-495 172-236 (254)
231 PRK15331 chaperone protein Sic 95.5 0.23 5E-06 39.2 9.7 86 77-164 48-133 (165)
232 KOG0550 Molecular chaperone (D 95.3 0.38 8.3E-06 43.7 11.6 153 334-495 178-353 (486)
233 PF07079 DUF1347: Protein of u 95.3 2.5 5.4E-05 39.3 35.8 443 40-511 16-535 (549)
234 COG0457 NrfG FOG: TPR repeat [ 95.3 1.7 3.7E-05 37.3 19.3 201 292-495 61-268 (291)
235 PF13170 DUF4003: Protein of u 95.2 2.2 4.8E-05 38.2 16.6 131 82-214 78-225 (297)
236 KOG1585 Protein required for f 95.2 1.7 3.6E-05 36.8 14.5 144 327-486 93-250 (308)
237 PF04053 Coatomer_WDAD: Coatom 95.0 0.65 1.4E-05 44.2 13.2 153 44-231 275-427 (443)
238 PF13929 mRNA_stabil: mRNA sta 95.0 1.4 3.1E-05 38.4 13.9 138 80-217 142-289 (292)
239 COG3118 Thioredoxin domain-con 94.9 2.4 5.1E-05 37.1 16.2 147 334-481 143-290 (304)
240 PF04053 Coatomer_WDAD: Coatom 94.8 0.91 2E-05 43.2 13.5 160 299-490 270-429 (443)
241 COG4649 Uncharacterized protei 94.7 1.1 2.4E-05 35.5 11.3 51 439-489 143-193 (221)
242 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.83 1.8E-05 42.7 12.3 66 63-130 72-141 (453)
243 KOG2280 Vacuolar assembly/sort 94.6 5.2 0.00011 39.8 26.2 116 355-487 679-794 (829)
244 smart00299 CLH Clathrin heavy 94.6 1.7 3.6E-05 34.0 16.1 84 71-162 12-95 (140)
245 COG3118 Thioredoxin domain-con 94.6 2.9 6.3E-05 36.6 17.4 148 74-225 142-291 (304)
246 KOG1585 Protein required for f 94.6 2.5 5.5E-05 35.7 13.9 44 82-127 74-117 (308)
247 PF07035 Mic1: Colon cancer-as 94.4 2.1 4.5E-05 34.3 14.6 27 90-116 18-44 (167)
248 KOG0543 FKBP-type peptidyl-pro 94.3 0.14 3.1E-06 46.3 6.6 124 367-492 215-355 (397)
249 PF13176 TPR_7: Tetratricopept 94.1 0.13 2.9E-06 28.8 4.0 24 431-454 2-25 (36)
250 PF13428 TPR_14: Tetratricopep 94.0 0.07 1.5E-06 31.7 2.9 29 429-457 2-30 (44)
251 PF04184 ST7: ST7 protein; In 94.0 5.6 0.00012 37.7 17.2 56 107-162 265-321 (539)
252 COG1729 Uncharacterized protei 94.0 1.1 2.4E-05 38.7 10.9 99 327-457 144-244 (262)
253 PF07035 Mic1: Colon cancer-as 94.0 2.6 5.7E-05 33.7 14.8 134 50-198 14-147 (167)
254 COG3898 Uncharacterized membra 94.0 4.8 0.0001 36.7 28.4 126 103-236 84-218 (531)
255 PF09613 HrpB1_HrpK: Bacterial 94.0 1.4 2.9E-05 34.8 10.5 53 5-57 14-71 (160)
256 PF13428 TPR_14: Tetratricopep 93.9 0.2 4.4E-06 29.7 4.8 32 465-496 3-34 (44)
257 PRK11906 transcriptional regul 93.9 1.7 3.7E-05 40.8 12.7 145 340-488 273-432 (458)
258 COG3629 DnrI DNA-binding trans 93.8 0.94 2E-05 39.7 10.5 79 136-215 153-236 (280)
259 COG1729 Uncharacterized protei 93.8 0.33 7.2E-06 41.7 7.6 87 407-495 153-247 (262)
260 PF04097 Nic96: Nup93/Nic96; 93.8 8.5 0.00018 38.9 20.4 90 142-236 264-357 (613)
261 PF00637 Clathrin: Region in C 93.7 0.0049 1.1E-07 48.6 -3.2 52 333-384 15-66 (143)
262 COG3629 DnrI DNA-binding trans 93.7 0.91 2E-05 39.8 10.2 80 101-181 153-237 (280)
263 KOG0543 FKBP-type peptidyl-pro 93.7 0.79 1.7E-05 41.8 10.0 123 334-457 217-355 (397)
264 KOG2610 Uncharacterized conser 93.6 3.3 7.2E-05 36.8 13.2 116 78-196 115-234 (491)
265 PF00515 TPR_1: Tetratricopept 93.6 0.079 1.7E-06 29.2 2.5 29 466-494 4-32 (34)
266 PF13176 TPR_7: Tetratricopept 93.5 0.062 1.3E-06 30.2 1.9 29 465-493 1-29 (36)
267 KOG2610 Uncharacterized conser 93.2 2 4.2E-05 38.2 11.2 154 301-457 114-276 (491)
268 KOG2114 Vacuolar assembly/sort 93.2 8.4 0.00018 39.0 16.6 146 69-230 337-487 (933)
269 PF07719 TPR_2: Tetratricopept 93.1 0.11 2.4E-06 28.6 2.6 29 466-494 4-32 (34)
270 PF09205 DUF1955: Domain of un 92.9 3.2 6.8E-05 31.4 13.4 62 176-238 91-152 (161)
271 PF10602 RPN7: 26S proteasome 92.8 4.2 9.1E-05 33.3 12.4 62 173-234 38-101 (177)
272 COG5107 RNA14 Pre-mRNA 3'-end 92.8 8.3 0.00018 36.0 32.1 147 325-475 397-547 (660)
273 PF13512 TPR_18: Tetratricopep 92.8 2.7 5.9E-05 32.5 10.3 72 77-148 21-94 (142)
274 COG2976 Uncharacterized protei 92.6 1.6 3.5E-05 35.5 9.3 90 402-493 96-189 (207)
275 PF13170 DUF4003: Protein of u 92.6 7.5 0.00016 34.9 19.5 85 152-238 78-175 (297)
276 PRK15180 Vi polysaccharide bio 92.5 9.6 0.00021 35.9 29.0 124 5-131 293-421 (831)
277 TIGR02561 HrpB1_HrpK type III 92.4 2.8 6E-05 32.6 9.9 53 5-57 14-71 (153)
278 PF13512 TPR_18: Tetratricopep 92.3 4.2 9.2E-05 31.5 12.6 70 44-113 24-94 (142)
279 COG4649 Uncharacterized protei 92.0 5.3 0.00011 31.9 12.8 135 326-461 60-200 (221)
280 KOG2041 WD40 repeat protein [G 91.9 14 0.00031 36.6 26.1 131 14-161 676-821 (1189)
281 PF13374 TPR_10: Tetratricopep 91.6 0.16 3.5E-06 29.5 2.1 28 465-492 4-31 (42)
282 KOG4570 Uncharacterized conser 91.4 5.8 0.00013 35.1 11.7 48 151-198 115-162 (418)
283 PF10602 RPN7: 26S proteasome 91.4 2.9 6.2E-05 34.2 9.8 63 326-388 37-101 (177)
284 KOG1920 IkappaB kinase complex 91.3 23 0.00049 37.7 17.9 77 144-232 947-1025(1265)
285 KOG0276 Vesicle coat complex C 91.2 3.1 6.7E-05 40.2 10.7 151 11-196 596-746 (794)
286 PF04184 ST7: ST7 protein; In 91.0 15 0.00032 35.1 15.7 78 139-216 262-341 (539)
287 PF08631 SPO22: Meiosis protei 91.0 11 0.00024 33.7 24.4 218 12-232 4-272 (278)
288 KOG4570 Uncharacterized conser 91.0 5.1 0.00011 35.4 11.1 102 131-236 59-165 (418)
289 PF00515 TPR_1: Tetratricopept 90.9 0.62 1.3E-05 25.5 4.0 29 429-457 2-30 (34)
290 PF02284 COX5A: Cytochrome c o 90.3 5.2 0.00011 28.7 9.5 60 84-144 28-87 (108)
291 KOG4555 TPR repeat-containing 90.2 6.6 0.00014 29.7 11.3 90 75-166 52-145 (175)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 2.5 5.5E-05 29.8 6.9 45 84-128 25-69 (103)
293 PRK11906 transcriptional regul 90.1 17 0.00038 34.4 15.7 117 45-164 273-400 (458)
294 PF13181 TPR_8: Tetratricopept 90.0 0.32 7E-06 26.7 2.3 29 466-494 4-32 (34)
295 COG3898 Uncharacterized membra 90.0 16 0.00034 33.7 31.8 59 361-421 330-389 (531)
296 PF07719 TPR_2: Tetratricopept 89.9 0.83 1.8E-05 24.9 4.0 28 430-457 3-30 (34)
297 KOG4555 TPR repeat-containing 89.4 7.7 0.00017 29.4 11.8 91 109-201 51-145 (175)
298 KOG4234 TPR repeat-containing 89.4 1.2 2.7E-05 36.2 5.8 21 369-389 104-124 (271)
299 KOG2066 Vacuolar assembly/sort 89.3 27 0.00058 35.3 24.1 26 209-234 508-533 (846)
300 PF11838 ERAP1_C: ERAP1-like C 89.1 18 0.00039 33.2 16.7 109 117-230 146-261 (324)
301 KOG1550 Extracellular protein 89.1 24 0.00052 35.2 15.9 186 46-238 228-429 (552)
302 PF04097 Nic96: Nup93/Nic96; 88.3 31 0.00068 35.0 19.7 88 403-490 422-532 (613)
303 PF00637 Clathrin: Region in C 88.3 0.42 9E-06 37.6 2.7 85 365-454 12-96 (143)
304 KOG1464 COP9 signalosome, subu 87.8 17 0.00038 31.4 14.1 206 303-509 40-278 (440)
305 PF13374 TPR_10: Tetratricopep 87.7 1.3 2.9E-05 25.4 4.1 28 429-456 3-30 (42)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 87.7 7.3 0.00016 27.6 7.8 44 155-198 26-69 (103)
307 PF11207 DUF2989: Protein of u 87.0 13 0.00027 30.9 10.2 73 153-226 123-198 (203)
308 PF10579 Rapsyn_N: Rapsyn N-te 87.0 1.5 3.3E-05 29.6 4.1 57 435-492 14-72 (80)
309 PF13174 TPR_6: Tetratricopept 86.9 1.2 2.6E-05 24.0 3.3 24 434-457 6-29 (33)
310 PRK15180 Vi polysaccharide bio 86.8 2.6 5.7E-05 39.3 7.0 88 406-494 334-422 (831)
311 KOG4648 Uncharacterized conser 86.6 1.5 3.2E-05 39.0 5.1 48 368-416 105-152 (536)
312 PF13929 mRNA_stabil: mRNA sta 86.4 22 0.00049 31.3 17.0 139 114-252 141-289 (292)
313 KOG1941 Acetylcholine receptor 86.1 27 0.00058 31.9 14.7 126 330-455 127-273 (518)
314 PF09613 HrpB1_HrpK: Bacterial 86.0 16 0.00034 29.1 13.7 52 112-165 21-73 (160)
315 PF13431 TPR_17: Tetratricopep 85.8 0.73 1.6E-05 25.4 2.0 23 426-448 11-33 (34)
316 PF11207 DUF2989: Protein of u 85.8 14 0.00031 30.6 9.9 79 111-191 117-198 (203)
317 PF13762 MNE1: Mitochondrial s 85.4 16 0.00034 28.5 10.8 50 135-184 78-128 (145)
318 PF13431 TPR_17: Tetratricopep 85.3 0.87 1.9E-05 25.1 2.1 31 384-415 3-33 (34)
319 PF02284 COX5A: Cytochrome c o 85.0 12 0.00026 26.9 8.9 45 155-199 29-73 (108)
320 COG4785 NlpI Lipoprotein NlpI, 84.7 22 0.00049 29.8 12.5 84 146-232 75-159 (297)
321 KOG1941 Acetylcholine receptor 84.3 33 0.00071 31.3 14.4 54 334-387 215-273 (518)
322 COG1747 Uncharacterized N-term 84.2 41 0.00088 32.4 17.4 165 63-234 63-233 (711)
323 PF13181 TPR_8: Tetratricopept 83.7 3.3 7.2E-05 22.4 4.1 28 430-457 3-30 (34)
324 COG4455 ImpE Protein of avirul 83.6 6.3 0.00014 32.9 7.0 55 400-454 6-61 (273)
325 KOG1258 mRNA processing protei 83.6 47 0.001 32.6 35.7 410 32-477 44-489 (577)
326 COG4455 ImpE Protein of avirul 83.4 12 0.00025 31.4 8.4 53 143-196 8-60 (273)
327 KOG2066 Vacuolar assembly/sort 82.6 60 0.0013 33.1 25.9 103 3-113 358-467 (846)
328 PF07721 TPR_4: Tetratricopept 82.6 2.5 5.3E-05 21.5 3.0 19 433-451 6-24 (26)
329 PF13174 TPR_6: Tetratricopept 82.3 1.4 3.1E-05 23.6 2.2 29 467-495 4-32 (33)
330 COG3947 Response regulator con 82.2 35 0.00076 30.1 13.3 61 430-491 281-341 (361)
331 COG1747 Uncharacterized N-term 82.2 49 0.0011 31.8 23.4 185 133-370 63-249 (711)
332 TIGR02561 HrpB1_HrpK type III 81.8 23 0.00049 27.7 12.5 18 112-129 55-72 (153)
333 TIGR03504 FimV_Cterm FimV C-te 81.4 4.2 9.1E-05 24.0 4.0 24 212-235 5-28 (44)
334 KOG0276 Vesicle coat complex C 80.9 20 0.00043 35.0 10.2 99 372-489 649-747 (794)
335 COG3947 Response regulator con 80.9 39 0.00085 29.8 16.6 55 177-232 285-339 (361)
336 KOG1586 Protein required for f 80.1 37 0.00079 29.0 12.1 65 438-502 164-234 (288)
337 COG0457 NrfG FOG: TPR repeat [ 80.0 35 0.00077 28.8 26.4 88 370-457 177-265 (291)
338 KOG0890 Protein kinase of the 80.0 1.3E+02 0.0028 35.3 22.1 119 106-234 1388-1511(2382)
339 COG5159 RPN6 26S proteasome re 79.9 42 0.0009 29.5 11.7 152 336-487 14-189 (421)
340 smart00028 TPR Tetratricopepti 79.9 2.7 5.8E-05 21.8 2.9 25 431-455 4-28 (34)
341 PF08631 SPO22: Meiosis protei 78.3 50 0.0011 29.5 26.4 161 43-206 6-192 (278)
342 TIGR03504 FimV_Cterm FimV C-te 78.3 4.9 0.00011 23.8 3.6 26 433-458 4-29 (44)
343 PF10345 Cohesin_load: Cohesin 78.1 84 0.0018 32.0 34.0 196 32-234 29-253 (608)
344 KOG3364 Membrane protein invol 78.0 9.5 0.00021 29.1 5.8 65 430-495 34-103 (149)
345 PF14853 Fis1_TPR_C: Fis1 C-te 77.9 3.2 7E-05 25.7 2.9 29 468-496 6-34 (53)
346 PF07163 Pex26: Pex26 protein; 77.4 44 0.00095 29.4 10.2 86 142-229 89-181 (309)
347 PF11663 Toxin_YhaV: Toxin wit 75.2 3.4 7.4E-05 31.3 2.9 31 441-473 108-138 (140)
348 KOG2396 HAT (Half-A-TPR) repea 74.0 87 0.0019 30.2 30.6 111 382-495 447-563 (568)
349 KOG4077 Cytochrome c oxidase, 73.4 27 0.00058 26.4 6.9 47 84-130 67-113 (149)
350 PF07163 Pex26: Pex26 protein; 73.3 64 0.0014 28.4 10.2 21 144-164 126-146 (309)
351 KOG2659 LisH motif-containing 73.2 57 0.0012 27.7 9.9 100 60-161 20-128 (228)
352 KOG1550 Extracellular protein 73.2 1.1E+02 0.0023 30.8 23.3 114 117-237 228-359 (552)
353 COG2976 Uncharacterized protei 72.9 53 0.0011 27.2 15.5 93 366-458 95-189 (207)
354 KOG4234 TPR repeat-containing 72.7 20 0.00043 29.6 6.7 92 334-426 104-199 (271)
355 PF11848 DUF3368: Domain of un 71.0 20 0.00044 21.6 5.1 33 77-109 13-45 (48)
356 PF06552 TOM20_plant: Plant sp 71.0 54 0.0012 26.7 8.8 41 188-236 97-137 (186)
357 PF04762 IKI3: IKI3 family; I 70.9 76 0.0017 34.1 12.5 27 4-30 697-723 (928)
358 PF08311 Mad3_BUB1_I: Mad3/BUB 69.6 31 0.00068 26.3 7.1 43 446-488 81-124 (126)
359 PF14689 SPOB_a: Sensor_kinase 68.7 8.8 0.00019 24.8 3.4 43 445-489 7-49 (62)
360 KOG0890 Protein kinase of the 68.6 2.5E+02 0.0055 33.3 25.4 149 71-230 1388-1542(2382)
361 PF11846 DUF3366: Domain of un 68.2 17 0.00037 30.3 6.1 35 460-494 141-175 (193)
362 KOG4077 Cytochrome c oxidase, 67.1 53 0.0011 24.9 7.7 44 156-199 69-112 (149)
363 KOG0687 26S proteasome regulat 66.5 1E+02 0.0022 27.9 11.3 85 402-486 111-204 (393)
364 KOG4648 Uncharacterized conser 66.2 19 0.00042 32.4 5.9 54 334-388 106-159 (536)
365 PF10579 Rapsyn_N: Rapsyn N-te 66.2 26 0.00057 23.9 5.2 46 183-228 18-65 (80)
366 PF11848 DUF3368: Domain of un 66.1 27 0.00058 21.1 5.3 29 184-212 15-43 (48)
367 cd08819 CARD_MDA5_2 Caspase ac 66.0 43 0.00092 23.4 7.0 62 86-153 22-83 (88)
368 PF14689 SPOB_a: Sensor_kinase 66.0 4.4 9.5E-05 26.2 1.6 27 430-456 25-51 (62)
369 COG0735 Fur Fe2+/Zn2+ uptake r 65.8 54 0.0012 25.8 8.0 24 107-130 26-49 (145)
370 KOG2063 Vacuolar assembly/sort 65.5 1.9E+02 0.0041 30.7 15.1 52 5-57 311-373 (877)
371 PF07575 Nucleopor_Nup85: Nup8 65.3 11 0.00025 37.7 5.1 30 219-248 508-537 (566)
372 PRK12356 glutaminase; Reviewed 65.1 1.1E+02 0.0024 27.8 11.3 23 208-230 233-255 (319)
373 PF13762 MNE1: Mitochondrial s 65.0 66 0.0014 25.2 12.4 50 170-219 78-128 (145)
374 PRK11619 lytic murein transgly 64.7 1.7E+02 0.0038 30.0 29.0 145 68-223 36-180 (644)
375 PF14669 Asp_Glu_race_2: Putat 64.5 80 0.0017 26.0 13.7 72 293-385 135-206 (233)
376 PF02259 FAT: FAT domain; Int 64.1 1.2E+02 0.0026 28.0 19.7 190 8-199 5-212 (352)
377 PF11846 DUF3366: Domain of un 63.5 44 0.00094 27.8 7.6 33 202-234 140-172 (193)
378 PRK12357 glutaminase; Reviewed 62.9 63 0.0014 29.3 8.5 20 21-40 90-109 (326)
379 COG4785 NlpI Lipoprotein NlpI, 62.9 94 0.002 26.3 16.0 182 44-237 79-268 (297)
380 COG5108 RPO41 Mitochondrial DN 62.4 61 0.0013 32.3 8.9 73 71-146 33-113 (1117)
381 PRK10941 hypothetical protein; 61.9 43 0.00093 29.6 7.4 80 430-512 183-262 (269)
382 PF11838 ERAP1_C: ERAP1-like C 60.9 1.3E+02 0.0029 27.4 13.2 86 78-166 142-231 (324)
383 PRK10564 maltose regulon perip 60.2 29 0.00062 30.9 5.9 34 210-243 261-294 (303)
384 PF13934 ELYS: Nuclear pore co 60.1 1.1E+02 0.0024 26.3 11.9 70 401-474 114-183 (226)
385 COG0735 Fur Fe2+/Zn2+ uptake r 60.1 66 0.0014 25.3 7.5 59 196-255 11-69 (145)
386 PF09670 Cas_Cas02710: CRISPR- 59.7 1.3E+02 0.0029 28.3 10.7 52 337-389 143-198 (379)
387 PF06552 TOM20_plant: Plant sp 58.7 77 0.0017 25.9 7.5 27 153-181 97-123 (186)
388 KOG4521 Nuclear pore complex, 58.3 2.8E+02 0.0061 30.3 13.1 136 363-499 986-1139(1480)
389 PRK09687 putative lyase; Provi 58.2 1.4E+02 0.003 26.7 27.8 37 434-473 241-277 (280)
390 COG2909 MalT ATP-dependent tra 58.1 2.5E+02 0.0053 29.6 29.7 195 301-495 469-689 (894)
391 TIGR02508 type_III_yscG type I 57.8 70 0.0015 23.1 8.7 15 112-126 50-64 (115)
392 PRK10564 maltose regulon perip 57.6 29 0.00062 30.9 5.5 35 134-168 254-289 (303)
393 TIGR02508 type_III_yscG type I 57.5 70 0.0015 23.1 8.4 86 44-140 19-106 (115)
394 KOG4567 GTPase-activating prot 56.9 81 0.0017 28.2 7.9 69 122-195 264-342 (370)
395 PRK11639 zinc uptake transcrip 56.8 86 0.0019 25.4 7.9 59 93-152 18-76 (169)
396 TIGR01503 MthylAspMut_E methyl 56.6 31 0.00067 32.7 5.8 137 375-518 69-243 (480)
397 PF14853 Fis1_TPR_C: Fis1 C-te 56.3 47 0.001 20.7 4.8 35 434-470 7-41 (53)
398 PF10345 Cohesin_load: Cohesin 56.2 2.4E+02 0.0052 28.8 40.0 154 43-198 73-252 (608)
399 PF10475 DUF2450: Protein of u 56.1 1.5E+02 0.0032 26.7 10.1 115 105-230 102-221 (291)
400 cd00280 TRFH Telomeric Repeat 55.7 1E+02 0.0022 25.3 7.7 47 83-129 86-139 (200)
401 PRK09687 putative lyase; Provi 55.2 1.6E+02 0.0034 26.4 28.7 55 327-388 208-262 (280)
402 PF13934 ELYS: Nuclear pore co 55.1 1.4E+02 0.003 25.7 9.8 116 20-147 65-183 (226)
403 PF08424 NRDE-2: NRDE-2, neces 55.1 1.7E+02 0.0037 26.8 14.2 78 47-127 48-128 (321)
404 PF02259 FAT: FAT domain; Int 54.8 1.8E+02 0.0038 26.9 22.0 66 324-389 145-213 (352)
405 PF11817 Foie-gras_1: Foie gra 54.7 75 0.0016 27.8 7.8 61 173-233 180-245 (247)
406 KOG3807 Predicted membrane pro 54.4 1.7E+02 0.0037 26.6 10.1 119 82-213 232-354 (556)
407 KOG2034 Vacuolar sorting prote 53.9 2.9E+02 0.0062 29.1 23.3 48 74-127 366-415 (911)
408 KOG1586 Protein required for f 53.7 1.5E+02 0.0032 25.6 18.2 93 150-242 128-231 (288)
409 PF09454 Vps23_core: Vps23 cor 53.2 44 0.00096 21.9 4.6 49 134-183 6-54 (65)
410 PHA02537 M terminase endonucle 53.0 1.2E+02 0.0025 26.2 8.2 23 334-356 92-114 (230)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 51.2 1.1E+02 0.0023 23.4 7.3 62 62-126 62-124 (126)
412 PRK11639 zinc uptake transcrip 50.9 1.1E+02 0.0025 24.8 7.7 59 128-187 18-76 (169)
413 PF11663 Toxin_YhaV: Toxin wit 50.5 23 0.00049 27.1 3.2 31 78-110 107-137 (140)
414 PHA02875 ankyrin repeat protei 50.3 2.3E+02 0.0051 27.0 13.5 17 143-159 72-88 (413)
415 cd00280 TRFH Telomeric Repeat 50.2 1.3E+02 0.0029 24.6 7.6 48 117-164 85-139 (200)
416 PF11817 Foie-gras_1: Foie gra 49.8 47 0.001 29.0 5.8 55 432-486 182-241 (247)
417 COG4976 Predicted methyltransf 49.7 27 0.00058 29.6 3.9 58 439-497 6-63 (287)
418 COG5108 RPO41 Mitochondrial DN 49.4 1.4E+02 0.003 30.1 8.9 74 106-182 33-114 (1117)
419 COG5159 RPN6 26S proteasome re 48.8 2E+02 0.0042 25.6 16.2 31 143-173 10-40 (421)
420 cd08819 CARD_MDA5_2 Caspase ac 47.7 96 0.0021 21.8 6.8 65 120-190 21-85 (88)
421 TIGR03814 Gln_ase glutaminase 47.3 2.2E+02 0.0047 25.7 9.4 18 22-39 75-92 (300)
422 PF10366 Vps39_1: Vacuolar sor 46.8 1.2E+02 0.0025 22.5 8.0 28 429-456 40-67 (108)
423 PF07575 Nucleopor_Nup85: Nup8 46.4 3.3E+02 0.0071 27.5 19.3 136 322-472 402-539 (566)
424 smart00777 Mad3_BUB1_I Mad3/BU 46.1 1.3E+02 0.0029 22.9 6.9 42 446-487 81-123 (125)
425 KOG4642 Chaperone-dependent E3 45.8 2E+02 0.0044 24.9 8.8 83 335-421 20-104 (284)
426 KOG4507 Uncharacterized conser 45.7 1.2E+02 0.0026 30.0 7.8 84 115-199 621-704 (886)
427 PF09454 Vps23_core: Vps23 cor 45.4 37 0.0008 22.2 3.3 51 63-114 5-55 (65)
428 PRK09462 fur ferric uptake reg 45.0 1.5E+02 0.0033 23.3 7.6 36 81-116 32-67 (148)
429 COG4715 Uncharacterized conser 44.9 3.2E+02 0.007 27.0 11.9 115 327-446 305-423 (587)
430 PRK14956 DNA polymerase III su 44.9 3.1E+02 0.0068 26.9 12.2 88 95-206 196-283 (484)
431 COG4941 Predicted RNA polymera 44.8 2.4E+02 0.0053 25.8 9.0 118 376-495 272-397 (415)
432 PF14561 TPR_20: Tetratricopep 43.8 1.1E+02 0.0025 21.5 7.3 57 423-479 17-74 (90)
433 cd07153 Fur_like Ferric uptake 42.7 82 0.0018 23.4 5.5 47 72-118 6-52 (116)
434 KOG1308 Hsp70-interacting prot 42.5 31 0.00068 31.2 3.5 91 372-463 126-217 (377)
435 KOG4567 GTPase-activating prot 42.3 1.8E+02 0.0038 26.2 7.7 58 156-218 263-320 (370)
436 PF09477 Type_III_YscG: Bacter 42.0 1.4E+02 0.003 22.0 9.2 80 44-131 20-99 (116)
437 PRK11619 lytic murein transgly 41.8 4.1E+02 0.0089 27.4 37.7 314 4-352 36-373 (644)
438 TIGR02384 RelB_DinJ addiction 41.6 1.2E+02 0.0026 21.1 5.8 14 18-31 15-28 (83)
439 PF01475 FUR: Ferric uptake re 41.4 74 0.0016 23.9 5.1 47 70-116 11-57 (120)
440 PRK08691 DNA polymerase III su 41.4 4.3E+02 0.0093 27.4 11.6 34 136-170 246-279 (709)
441 PF14669 Asp_Glu_race_2: Putat 40.7 2.1E+02 0.0046 23.7 13.6 57 432-488 136-206 (233)
442 PF02847 MA3: MA3 domain; Int 40.4 1.5E+02 0.0032 21.8 7.0 20 108-127 9-28 (113)
443 KOG2063 Vacuolar assembly/sort 40.0 5E+02 0.011 27.8 20.2 117 103-219 506-639 (877)
444 PF02847 MA3: MA3 domain; Int 39.3 1.5E+02 0.0033 21.8 6.5 62 140-203 6-69 (113)
445 PHA02875 ankyrin repeat protei 39.1 3.5E+02 0.0076 25.8 11.8 115 336-463 110-230 (413)
446 PRK09462 fur ferric uptake reg 38.8 1.9E+02 0.0042 22.7 7.9 34 152-185 33-66 (148)
447 PRK09857 putative transposase; 38.1 2.8E+02 0.006 25.1 8.8 20 185-204 254-273 (292)
448 PF00627 UBA: UBA/TS-N domain; 37.8 57 0.0012 18.2 3.0 33 19-52 4-36 (37)
449 PRK13342 recombination factor 37.4 3.8E+02 0.0082 25.7 18.2 37 338-374 243-279 (413)
450 PRK06645 DNA polymerase III su 37.4 4.3E+02 0.0092 26.3 11.1 36 135-171 257-292 (507)
451 PF07064 RIC1: RIC1; InterPro 37.2 2.9E+02 0.0064 24.4 16.2 156 68-236 84-250 (258)
452 TIGR02878 spore_ypjB sporulati 37.0 74 0.0016 27.0 4.6 25 3-27 7-31 (233)
453 smart00638 LPD_N Lipoprotein N 36.8 4.6E+02 0.01 26.5 26.9 102 64-171 308-411 (574)
454 PF08870 DUF1832: Domain of un 36.5 1.2E+02 0.0025 22.7 5.2 17 48-64 7-23 (113)
455 PF12926 MOZART2: Mitotic-spin 35.3 1.6E+02 0.0034 20.7 7.9 42 87-128 29-70 (88)
456 PF00244 14-3-3: 14-3-3 protei 35.1 3E+02 0.0066 23.9 10.4 59 71-129 6-65 (236)
457 KOG0376 Serine-threonine phosp 34.9 71 0.0015 30.5 4.7 69 403-473 46-115 (476)
458 PF12862 Apc5: Anaphase-promot 34.9 1.7E+02 0.0036 20.8 7.3 53 182-234 9-69 (94)
459 KOG4507 Uncharacterized conser 34.8 1.4E+02 0.0029 29.6 6.5 54 367-421 649-702 (886)
460 KOG4279 Serine/threonine prote 34.5 5.5E+02 0.012 26.7 14.4 226 53-357 147-398 (1226)
461 PRK14956 DNA polymerase III su 34.5 4.6E+02 0.0099 25.8 12.4 102 47-172 183-284 (484)
462 COG4259 Uncharacterized protei 34.4 1.8E+02 0.0039 21.0 6.0 49 447-495 56-104 (121)
463 cd07153 Fur_like Ferric uptake 34.4 1.3E+02 0.0028 22.3 5.4 36 150-185 14-49 (116)
464 PF10155 DUF2363: Uncharacteri 34.1 2.1E+02 0.0046 21.8 11.2 45 446-490 81-125 (126)
465 KOG0991 Replication factor C, 34.0 3.1E+02 0.0068 23.7 12.7 35 99-134 237-271 (333)
466 PRK07003 DNA polymerase III su 34.0 5.9E+02 0.013 26.9 16.3 45 47-93 181-225 (830)
467 PRK14958 DNA polymerase III su 33.2 5E+02 0.011 25.8 12.0 37 135-172 245-281 (509)
468 KOG0686 COP9 signalosome, subu 32.5 4.4E+02 0.0095 25.0 12.7 182 326-510 151-353 (466)
469 PF09670 Cas_Cas02710: CRISPR- 32.5 4.4E+02 0.0095 25.0 12.2 56 109-165 139-198 (379)
470 PF10255 Paf67: RNA polymerase 32.3 1.1E+02 0.0024 28.9 5.5 130 361-500 123-275 (404)
471 PF03745 DUF309: Domain of unk 32.0 1.4E+02 0.0031 19.2 5.6 46 78-123 11-61 (62)
472 KOG1464 COP9 signalosome, subu 31.8 3.6E+02 0.0079 23.8 18.7 140 96-235 21-174 (440)
473 KOG0545 Aryl-hydrocarbon recep 31.7 3E+02 0.0065 24.0 7.2 64 431-495 233-296 (329)
474 KOG4642 Chaperone-dependent E3 31.5 2.5E+02 0.0055 24.4 6.8 118 370-489 20-143 (284)
475 PF09477 Type_III_YscG: Bacter 31.5 2.1E+02 0.0047 21.1 9.6 80 80-166 20-99 (116)
476 PF12926 MOZART2: Mitotic-spin 31.4 1.9E+02 0.004 20.3 8.1 43 192-234 29-71 (88)
477 PF04034 DUF367: Domain of unk 31.2 2.1E+02 0.0046 21.8 5.7 59 395-454 66-125 (127)
478 PF11491 DUF3213: Protein of u 31.0 12 0.00025 25.4 -0.6 53 459-511 20-78 (88)
479 PF04090 RNA_pol_I_TF: RNA pol 30.9 1.6E+02 0.0035 24.6 5.7 65 429-494 42-107 (199)
480 PRK14963 DNA polymerase III su 30.8 5.5E+02 0.012 25.5 11.6 34 136-170 242-275 (504)
481 PF07678 A2M_comp: A-macroglob 30.6 3.3E+02 0.0072 23.8 8.0 149 85-236 33-222 (246)
482 PF10475 DUF2450: Protein of u 30.5 4.1E+02 0.0088 24.0 12.6 52 142-199 104-155 (291)
483 PF09986 DUF2225: Uncharacteri 30.4 2.8E+02 0.0061 23.6 7.3 22 471-492 173-194 (214)
484 KOG2297 Predicted translation 30.4 4.1E+02 0.009 24.0 13.8 69 148-226 267-341 (412)
485 KOG2034 Vacuolar sorting prote 30.4 6.9E+02 0.015 26.5 27.0 49 174-231 507-555 (911)
486 PF10516 SHNi-TPR: SHNi-TPR; 30.3 61 0.0013 18.4 2.2 30 465-494 3-32 (38)
487 PF08424 NRDE-2: NRDE-2, neces 30.0 4.4E+02 0.0095 24.2 17.5 98 63-162 16-128 (321)
488 COG2137 OraA Uncharacterized p 29.8 3.1E+02 0.0068 22.4 13.2 109 85-197 54-164 (174)
489 KOG0991 Replication factor C, 29.6 3.7E+02 0.0081 23.3 13.3 50 426-477 237-286 (333)
490 KOG2582 COP9 signalosome, subu 29.5 4.7E+02 0.01 24.4 18.5 143 63-217 72-226 (422)
491 PF12968 DUF3856: Domain of Un 29.3 2.5E+02 0.0055 21.2 6.4 65 428-492 55-129 (144)
492 PF01475 FUR: Ferric uptake re 29.2 1.4E+02 0.003 22.4 4.9 43 106-148 12-54 (120)
493 PRK00971 glutaminase; Provisio 29.0 4.5E+02 0.0097 24.0 9.4 18 211-228 232-249 (307)
494 COG2405 Predicted nucleic acid 28.9 1.4E+02 0.003 23.1 4.4 33 112-144 120-152 (157)
495 PF12862 Apc5: Anaphase-promot 28.3 2.2E+02 0.0048 20.2 8.4 21 178-198 48-68 (94)
496 PF02607 B12-binding_2: B12 bi 28.1 73 0.0016 21.5 2.9 39 440-478 13-51 (79)
497 PF02607 B12-binding_2: B12 bi 28.0 1.5E+02 0.0032 20.0 4.4 22 150-171 15-36 (79)
498 smart00386 HAT HAT (Half-A-TPR 27.9 95 0.0021 15.9 4.1 13 45-57 2-14 (33)
499 COG2812 DnaX DNA polymerase II 27.8 6.2E+02 0.013 25.2 11.3 48 47-96 181-228 (515)
500 smart00165 UBA Ubiquitin assoc 27.7 1.2E+02 0.0025 16.8 3.8 33 19-52 3-35 (37)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-66 Score=524.13 Aligned_cols=487 Identities=17% Similarity=0.241 Sum_probs=434.8
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC---C-CCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL---P-IKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~---~-~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
+.+..+..+++.|++++|+++|++| + +.|+..+++.++..| |..+.|..+|+.|. .||..+|+.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHH
Confidence 3566778888999999999999999 3 456777777777665 88999999999985 3999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE--AGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 5899999999999999999999999999999999
Q ss_pred HcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHH
Q 010057 234 ENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLL 313 (519)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (519)
+.++.|+..+|..++..|.+.++.+.....+... .......+...++.++..|++.|++++|..++
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM--------------~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM--------------KKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999988877665433221 11223445567788999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCc
Q 010057 314 SGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393 (519)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (519)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCchhHHHHHHHHHh-----------------------cCCHHHHH
Q 010057 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFS-----------------------AGSADKAL 448 (519)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~-----------------------~g~~~~A~ 448 (519)
|..+|+.++.+|++.|++++|.++|+.|.+. .||..+|+.++..|.+ .+..++|+
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999998775 5888999999876542 12346799
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhh
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDL 511 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 511 (519)
.+|++|++.|+.||..||+.++.++.+.+..+.+..+++.+.. ....|+..+++.+|.++
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~---~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI---SADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc---CCCCcchhhhHHHHHhh
Confidence 9999999999999999999999777888888888888876643 35678888888888875
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-65 Score=515.71 Aligned_cols=474 Identities=16% Similarity=0.160 Sum_probs=435.6
Q ss_pred HHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhH
Q 010057 8 VYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISS 84 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 84 (519)
+..+.+.|.+++|.++|+.|.. |+..+|+.+|..| |+++.|.++|+.| ...|+.||..+|+.+|.+|++.|++++
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 4457788999999999999975 9999999999987 8999999999999 578999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 85 MKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 85 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 010057 165 --RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 165 --~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
.|+.||..+|++||.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010057 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322 (519)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (519)
+|..++..+.+.++.+.....+.. ........+...++.++..|++.|++++|..+|+.|...++.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~e--------------M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQD--------------ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH--------------HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999887765442221 122334556678899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh----cCC-------------------CcchHHHHhhhCCcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 403 HRLG----SAR-------------------RPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 403 ~~~~----~~g-------------------~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
..|. +++ ..++|..+|++|.+. .||..+|+.++.++...+..+.+.++++.|...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 7643 221 135799999999886 599999999999888899999999999999999
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccccccc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAV 502 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 502 (519)
+..|+..+|++++.+|.+. .++|..++++|.+. ++.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~---Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL---GVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc---CCCCCcc
Confidence 9999999999999998442 36899999988764 6667654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-64 Score=519.17 Aligned_cols=479 Identities=15% Similarity=0.195 Sum_probs=349.7
Q ss_pred HHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhH
Q 010057 8 VYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISS 84 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 84 (519)
|..|.+.|+++.|+++|++|+ .||..+|+.+|..+ |++++|+++|+.|. ..|+.||..||+.++++|++.+++..
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhh
Confidence 444556666666666666664 34556666665544 55566666666653 34555555555555544444444444
Q ss_pred HHHHHHHHHhCCCCC-------------------------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 85 MKYVFELMQEKGINI-------------------------------DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 85 a~~~~~~m~~~~~~~-------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
+.+++..|.+.|+.| |..+||++|.+|++.|+.++|.++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 444444444444444 4455555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 213 (519)
||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||..+|+++|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 55555555555555555555555555555555555555556666666666666666666666554 24555666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcch
Q 010057 214 EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID 293 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (519)
.+|++.|++++|.++|++|.+.|+.|+..++..++.++.+.++.+...... ..........+..++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~--------------~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH--------------ELAERKGLISYVVVA 427 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH--------------HHHHHhCCCcchHHH
Confidence 666666666666666666666666677777777776666666554432211 011233445566788
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
+.++..|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 8999999999999999999999864 5778999999999999999999999999986 5899999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 58899999999999999999999999999
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccCC
Q 010057 454 MCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516 (519)
Q Consensus 454 m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 516 (519)
|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+. .++.|+..++...+..+..+|+
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~--~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK--YSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998743 4678888888888888888775
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.4e-61 Score=481.10 Aligned_cols=459 Identities=15% Similarity=0.177 Sum_probs=426.2
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIF 76 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 76 (519)
+-..|..+.+.|++++|+++|+.| +..|+..+|+.++.++ ++.+.|.+++..| ...|+.||..+|+.++.+|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHH
Confidence 456788899999999999999998 4679999999999987 7899999999999 4789999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEAT 156 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 156 (519)
++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999975 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 157 DVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 157 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|.. +|..+|++||.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999964 699999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHH
Q 010057 237 LALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGI 316 (519)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (519)
+.|+..+|..++.++.+.+..+...+.. ..........+..+++.++..|++.|+++.|..+|+.|
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~--------------~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAH--------------AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHH--------------HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999999999988776543321 11223445667788999999999999999999999998
Q ss_pred HhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-cCCCccc
Q 010057 317 MDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTK-AGHSLGV 395 (519)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 395 (519)
. .||..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 6 4788999999999999999999999999999999999999999999999999999999999999986 6999999
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-SLGTFNVLLAGLE 474 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~ 474 (519)
.+|++++++|++.|++++|.++++.++. .|+..+|++|+.+|..+|+.+.|.++++++.+. .| +..+|..++++|+
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRAPF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYN 539 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHH
Confidence 9999999999999999999999999875 588999999999999999999999999999755 55 4779999999999
Q ss_pred hcCChhHHHHHHHHhccc
Q 010057 475 KLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~ 492 (519)
+.|++++|.+++++|++.
T Consensus 540 ~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCHHHHHHHHHHHHHc
Confidence 999999999999999865
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-61 Score=492.19 Aligned_cols=472 Identities=15% Similarity=0.162 Sum_probs=434.1
Q ss_pred hhHHhhhccCChhHHHHHHHhC---CCCCCHHHHHHHHhcC--------------------------------------C
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL---PIKWDSYTVNQVLKTH--------------------------------------P 44 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~ll~~~--------------------------------------~ 44 (519)
..|.++.+.|++++|+++|++| |+.||.++|+.+|.+| |
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 5688899999999999999998 8899988887766532 6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
+++.|.++|+.|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++
T Consensus 237 ~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 237 DVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 7788888888884 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010057 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 204 (519)
..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999997 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHh
Q 010057 205 DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTT 284 (519)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (519)
|..||+.++.+|++.|+++.|.++++.+.+.|+.++..++..++..|.+.++.+.....+...
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m----------------- 450 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----------------- 450 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-----------------
Confidence 999999999999999999999999999999999999999999999999999888766544332
Q ss_pred ccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHH
Q 010057 285 DIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYL 364 (519)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (519)
...+...++.++..|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.++..+++
T Consensus 451 -~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 451 -PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred -CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 234556889999999999999999999999975 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCchhHHHHHHHHHhcC
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAG 442 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g 442 (519)
+++.+|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+. .||..||+.++.+|.+.|
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999887 589999999999999999999999999999775 689999999999999999
Q ss_pred CHHHHHHHHHHHH-HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccCC
Q 010057 443 SADKALKIYKTMC-RKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516 (519)
Q Consensus 443 ~~~~A~~~~~~m~-~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 516 (519)
++++|.++|++|. +.|+.|+..+|++++.+|.+.|++++|.+++++|. +.||...+..++.++-..|+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~------~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP------ITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999 67999999999999999999999999999998872 56888888888888766554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-59 Score=465.60 Aligned_cols=456 Identities=14% Similarity=0.157 Sum_probs=407.7
Q ss_pred CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 010057 28 PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTY 104 (519)
Q Consensus 28 ~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 104 (519)
...++..+|+.+|..+ |++++|+++|++|....++.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 3445666888888764 8999999999999755568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+.|+.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999999999999964 699999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhh
Q 010057 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQV 264 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 264 (519)
|..+.+.+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|.. ++..+|..++..|.+.++.++....+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999965 46778999999999888887765433
Q ss_pred CCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhH
Q 010057 265 HPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGA 344 (519)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (519)
... .......+...+..++..+++.|+++.+..++..|.+.|+.|+..+|++++.+|++.|++++|
T Consensus 314 ~~M--------------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 314 YEM--------------RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHH--------------HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 211 112234555678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC
Q 010057 345 LLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
.++|+.|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|..++|.++|+.|.+.
T Consensus 380 ~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999886 47889999999999999999999999999999999999999999999999999999999999999653
Q ss_pred ---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccc
Q 010057 425 ---QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDA 501 (519)
Q Consensus 425 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 501 (519)
.|+..+|+.|+.+|++.|+.++|.+++++| ++.||..+|+.++.+|...|+++.|+..++++.++.|+ +.
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~----~~ 528 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE----KL 528 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC----CC
Confidence 588899999999999999999999998876 67899999999999999999999999999999887764 34
Q ss_pred cchHHHHhhhhccCC
Q 010057 502 VPMEEKICDLLYGGD 516 (519)
Q Consensus 502 ~~~~~~i~~~~~~~~ 516 (519)
.++..++..+...|+
T Consensus 529 ~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 529 NNYVVLLNLYNSSGR 543 (697)
T ss_pred cchHHHHHHHHhCCC
Confidence 466666665555553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.9e-26 Score=240.79 Aligned_cols=467 Identities=12% Similarity=0.028 Sum_probs=233.6
Q ss_pred hhhccCChhHHHHHHHhC-CCCCCHHH-HHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhH
Q 010057 10 KILKYSTWDSAQDLLKNL-PIKWDSYT-VNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISS 84 (519)
Q Consensus 10 ~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 84 (519)
.+...|++++|++.|+.. ...|+... ...+ ....|++++|.++++.+... .+++..+|..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHH
Confidence 345566666666666655 22222211 1111 11236666666666666432 24455566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 85 MKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 85 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|.+.|+.+.+... .+...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+.++|...++++..
T Consensus 484 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666655432 234455556666666666666666666665543 22455566666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH
Q 010057 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF 244 (519)
Q Consensus 165 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 244 (519)
.+ +.+...+..+...|...|++++|..+++.+.+. .+.+..+|..+..+|.+.|++++|...++.+.+.... +...+
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 638 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALAL 638 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 42 234455555666666666666666666666543 2334556666666666666666666666665554321 12223
Q ss_pred HHHHHHHhhcCchhHHHhhhCCCCCccc----------------ccchhhhhhHHhc---cCCCCcchhHHHHHHHhcCC
Q 010057 245 KEALQTFKVADENDSLLWQVHPQFSPEF----------------ISDNDAVEFVTTD---IEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 305 (519)
..+...+...++.+.....+........ .....+....... .......+..+...+...|+
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 3333333334443333222211110000 0000000000000 01111222333344555555
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEE 385 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (519)
+++|...+..+.... |+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+.
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 555555555554432 222444445555555555555555555555433 23444455555555555555555555555
Q ss_pred HHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 386 MTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.+.. +.++.+++.+...+...|+ .+|...++++.... .++..+..+..+|.+.|++++|.++|+++.+.+ +.++.
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~ 872 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAA 872 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChH
Confidence 55443 3344455555555555555 44555555444332 234445555555555555555555555555553 22455
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
++..+..++.+.|++++|.++++++
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.5e-25 Score=236.28 Aligned_cols=492 Identities=12% Similarity=0.072 Sum_probs=374.6
Q ss_pred hHHhhhccCChhHHHHHHHhC-CCCCCHHH-HHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 010057 7 NVYKILKYSTWDSAQDLLKNL-PIKWDSYT-VNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81 (519)
Q Consensus 7 ~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 81 (519)
....+.+.|++++|.+.|+++ ...|+... +..+ ....|++++|.+.|+.+.+.. +.+......++..+.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCC
Confidence 445677899999999999988 44555433 3222 223499999999999886432 2344566778889999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKE 161 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (519)
+++|.++++.+.+.. +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998753 4478899999999999999999999999998763 23566788899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH
Q 010057 162 MIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRY 241 (519)
Q Consensus 162 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 241 (519)
+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...|.+.|++++|..+++.+.+.... +.
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 601 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SP 601 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CH
Confidence 99864 4477899999999999999999999999998764 346678889999999999999999999999875433 44
Q ss_pred HHHHHHHHHHhhcCchhHHHhhhCCCCC----------------cccccchhhhhhHHhccC---CCCcchhHHHHHHHh
Q 010057 242 PVFKEALQTFKVADENDSLLWQVHPQFS----------------PEFISDNDAVEFVTTDIE---GPLSIDQGLVLILLK 302 (519)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~ 302 (519)
..+..+...+...++.+.....+..... ........+...+..... .....+..+...+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5555556666666655544332211110 011112222233322222 223344566778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEI 382 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (519)
.|+.+.|..+++.+.... ..+...+..+...+...|++++|+..|+.+...+ |+..++..+..++.+.|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 899999999998887765 3466677788888889999999999999888765 4446777888889999999999999
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 383 VEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
+..+.+.. +.+...+..+...|...|+.++|.+.|+++.+. ++++..++.+...+.+.|+ .+|+++++++.+.. +-
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~ 835 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PN 835 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CC
Confidence 99988765 567778888888999999999999999988765 4567788999999999999 78999999988763 33
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccC
Q 010057 462 SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGG 515 (519)
Q Consensus 462 ~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 515 (519)
++.++..+..++...|++++|.++++++.+..|. +...+......+...|
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE----AAAIRYHLALALLATG 885 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcC
Confidence 5667778888899999999999999999988775 3344444444444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.4e-21 Score=181.20 Aligned_cols=310 Identities=11% Similarity=0.102 Sum_probs=211.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCC
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT---IVSYTAYMKILFLNDR 151 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~ 151 (519)
.+...|++++|...|..+.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556777777777777776532 2455667777777777777777777777665422211 2356666777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK----AACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~ 227 (519)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 335566777777777777777777777777664322211 134455556666677777777
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHH
Q 010057 228 ILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLV 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (519)
.++++.+...
T Consensus 202 ~~~~al~~~p---------------------------------------------------------------------- 211 (389)
T PRK11788 202 LLKKALAADP---------------------------------------------------------------------- 211 (389)
T ss_pred HHHHHHhHCc----------------------------------------------------------------------
Confidence 7666554221
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 308 AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
.+...+..+...+.+.|++++|++.|+++.+.+......++..+..+|.+.|++++|...++.+.
T Consensus 212 ---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 212 ---------------QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred ---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234555667777888888888888888765433334567788888888888888888888888
Q ss_pred hcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 388 KAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS---AGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 388 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.. |+...+..+...+.+.|++++|.++++.+.+..|+...++.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 764 555666778888888888888888888777767777788888877664 558889999999999988888877
Q ss_pred cHHHHHHHHHhcCCh
Q 010057 465 TFNVLLAGLEKLGRV 479 (519)
Q Consensus 465 t~~~l~~~~~~~g~~ 479 (519)
.+|.+.|..
T Consensus 355 ------~~c~~cg~~ 363 (389)
T PRK11788 355 ------YRCRNCGFT 363 (389)
T ss_pred ------EECCCCCCC
Confidence 235555544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2e-18 Score=182.72 Aligned_cols=477 Identities=10% Similarity=-0.012 Sum_probs=277.0
Q ss_pred hhHHhhhccCChhHHHHHHHhC--CCCCCHHH----HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL--PIKWDSYT----VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~--~~~p~~~~----~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
.....+.+.|++++|++.|++. +.+|+... |..+....+++++|++.++.+.+.. +.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcc
Confidence 3344578889999999999998 33344321 2222333489999999999997553 55677888999999999
Q ss_pred CChhHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------------HH
Q 010057 80 KRISSMKYVFELMQEKGI------------------N--------------IDAVTY---------------------TS 106 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~------------------~--------------~~~~~~---------------------~~ 106 (519)
|+.++|.+.++++.+... . |+.... ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999998765321 0 110000 01
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH----------
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP-NCYTYT---------- 175 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~---------- 175 (519)
....+...|++++|+..|++..+... .+...+..+..++.+.|++++|...|++..+..... +...|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 13345678999999999999988632 267889999999999999999999999988753211 111121
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhh
Q 010057 176 --VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKV 253 (519)
Q Consensus 176 --~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (519)
.....+.+.|++++|...|++..+.. +.+...+..+..++...|++++|++.|++..+...... ..+..+...+.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH-
Confidence 22446778999999999999998863 23556778889999999999999999999987654322 22222222222
Q ss_pred cCchhHHHhhhCCCCC-------------------------cccccchhhhhhHHhccCC---CCcchhHHHHHHHhcCC
Q 010057 254 ADENDSLLWQVHPQFS-------------------------PEFISDNDAVEFVTTDIEG---PLSIDQGLVLILLKKKN 305 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 305 (519)
..+.+.....+..... ........+...+...... +......+...+...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 1222222211110000 0011112222222222211 11223344455666666
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC-----------------------------
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL----------------------------- 356 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------------- 356 (519)
.++|...++.+...... +...+..+...+...++.++|+..++.+.....
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 66666666665543221 222222223334455666666666655422110
Q ss_pred ----------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC
Q 010057 357 ----------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK 426 (519)
Q Consensus 357 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 426 (519)
+.+...+..+...+.+.|++++|+..|+...+.. +.+......+...|...|+.++|++.++.+....|
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 1122233344445555566666666666655543 23445555555666666666666666665554433
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 427 -CTATYTALIGVYFSAGSADKALKIYKTMCRKGI--HP---SLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 427 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
+...+..+..++...|++++|.++++++....- +| +...+..+...+...|++++|...|++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234445555556666666666666666554421 11 11233344555566666666666666553
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8.1e-19 Score=185.72 Aligned_cols=433 Identities=12% Similarity=0.066 Sum_probs=274.8
Q ss_pred hhccCChhHHHHHHHhC-CCCCC-HHHHHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHH------------HHH
Q 010057 11 ILKYSTWDSAQDLLKNL-PIKWD-SYTVNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYT------------TML 73 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~li 73 (519)
+...|++++|+..|++. ...|+ ...+..+ ....|++++|++.|+...+...-.++...|. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 45567777777777766 44443 2222222 1223777777777776653321111211121 112
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
..+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 3455667777777777777765322 45566666777777777777777777776552 123445555555553 34667
Q ss_pred HHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHH
Q 010057 154 EATDVYKEMIQRGL--------PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 154 ~a~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 224 (519)
+|..+++.+..... ......+..+...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77766665432210 001123445666777889999999999998875 34 45577788889999999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCC----CcchhHHHHHH
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGP----LSIDQGLVLIL 300 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 300 (519)
|...++.+.+.........+...+ .+...++.+.....+...... .+........ ..........+
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al-~l~~~~~~~~Al~~l~~l~~~---------~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGL-YLSGSDRDRAALAHLNTLPRA---------QWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHhCCch---------hcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999988755433333333222 222333333332221111000 0000000000 00011234567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHH
Q 010057 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (519)
...|+.++|..++.. ...+...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+...|++++|.
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788999999999882 23455667788889999999999999999999875 446778899999999999999999
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 381 EIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-------CTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
+.++.+.+.. +.+......+..++...|+.++|.++++.+....| +...+..+...+...|++++|++.|++
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999887653 34455667788889999999999999998866422 123566678889999999999999998
Q ss_pred HH-HCCCCCCccc
Q 010057 454 MC-RKGIHPSLGT 465 (519)
Q Consensus 454 m~-~~g~~p~~~t 465 (519)
.. ..|+.|+...
T Consensus 737 Al~~~~~~~~~p~ 749 (1157)
T PRK11447 737 AMVASGITPTRPQ 749 (1157)
T ss_pred HHhhcCCCCCCCC
Confidence 75 4567776543
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.5e-20 Score=173.27 Aligned_cols=299 Identities=14% Similarity=0.100 Sum_probs=242.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc
Q 010057 108 MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN---CYTYTVLMEYLVRA 184 (519)
Q Consensus 108 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 184 (519)
...+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3355678999999999999998742 3566889999999999999999999999987532222 25678889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhh
Q 010057 185 GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQV 264 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 264 (519)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 99999999999998752 3467789999999999999999999999887754321110
Q ss_pred CCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhH
Q 010057 265 HPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGA 344 (519)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (519)
.....+..+...+...|++++|
T Consensus 178 ----------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 178 ----------------------------------------------------------EIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHhCCCHHHH
Confidence 0112344566677889999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC
Q 010057 345 LLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.+..+|...|+.++|.+.++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 33456788888999999999999999999997653333466788999999999999999999998887
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---cCChhHHHHHHHHhcc
Q 010057 425 QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK---LGRVSDAEIYRKEKKS 491 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~---~g~~~~a~~~~~~~~~ 491 (519)
.|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.+++...++++.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 777777899999999999999999999999887 6898899988887764 4588888888887764
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=6.1e-18 Score=167.44 Aligned_cols=98 Identities=7% Similarity=0.039 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc-hhHHHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV-YLGALLI 402 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 402 (519)
+...+..+...+...|++++|+..++...+.. +.+...+..+..++.+.|++++|...++.+.+.+ |+. ..+..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 34455566666666777777777777666543 2234445556666677777777777777666543 322 2233344
Q ss_pred HHHhcCCCcchHHHHhhhCCcC
Q 010057 403 HRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
.++...|+.++|...|++..+.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 5566677777777777665544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=6.7e-18 Score=167.17 Aligned_cols=332 Identities=9% Similarity=-0.017 Sum_probs=210.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
...++..+.+.|+++.|..+++........ +...+..++.+....|+++.|...|+++.+... .+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 344455556666666666666666655433 333444444555566666666666666665521 134556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 228 (519)
.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 666666666666666531 223445666666666666666666666666543221 22222222 235566666666666
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHH
Q 010057 229 LRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVA 308 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (519)
++.+.+....+..... ..+...+...|+.++
T Consensus 200 ~~~~l~~~~~~~~~~~-------------------------------------------------~~l~~~l~~~g~~~e 230 (656)
T PRK15174 200 ARALLPFFALERQESA-------------------------------------------------GLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHHhcCCCcchhHH-------------------------------------------------HHHHHHHHHCCCHHH
Confidence 6665554321111100 111223445566666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhh----HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDG----ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
|...+........ .+...+..+...+...|++++ |+..|+...+.. +.+...+..+...+.+.|++++|...++
T Consensus 231 A~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666554432 245566667778888888875 788888888764 3356678888889999999999999999
Q ss_pred HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchh-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTAT-YTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
...+.. +.+......+..++.+.|++++|...++.+....|+... +..+..++...|++++|++.|++..+.
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 988764 345556777888888999999999999888776665433 444567788899999999999988876
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.9e-18 Score=156.21 Aligned_cols=429 Identities=11% Similarity=0.058 Sum_probs=288.1
Q ss_pred hhhhHHhhhccCChhHHHHHHHhCCC-CCC----HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNLPI-KWD----SYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
.+...+...+.|++.+|++--.-.+. .|+ .....++...+.+++.....-....+. .+--..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHH
Confidence 34445555666777777665543321 122 112222222334444443332222221 13345667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY-TAYMKILFLNDRVKEATD 157 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~ 157 (519)
.|++++|..+++.+.+.... ....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+-..+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 77777777777777766332 4567777777777777777777777776654 4444332 233344445677777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 158 VYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK-AACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 158 ~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.|.+..+. .|. ...|+.|.-.+-..|+...|+..|++... +.|+- ..|-.|...|...+.++.|...+......
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77766664 343 33566677777777777777777777765 34443 36677777777777777777776655442
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG 315 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (519)
.. +. ...+..+...|...|.++.|...+++
T Consensus 282 rp--n~------------------------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 282 RP--NH------------------------------------------------AVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred CC--cc------------------------------------------------hhhccceEEEEeccccHHHHHHHHHH
Confidence 21 11 11334455567778888888888888
Q ss_pred HHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc
Q 010057 316 IMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (519)
....... -...|+.+..++-..|+..+|...|....... +.-....+.|...+...|.+++|..+|....+-. +--.
T Consensus 312 al~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~a 388 (966)
T KOG4626|consen 312 ALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFA 388 (966)
T ss_pred HHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhh
Confidence 7654322 24568888899988999999999998887654 2234557888889999999999999998887643 2223
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL 473 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~ 473 (519)
...+.|...|-.+|++++|...+++..+..|+ ..+|+.+...|-..|+.+.|++.+.+.+.. .|. ...++.|.+.|
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHh
Confidence 45677888888999999999999888777665 468888999999999999999999888865 454 56788888899
Q ss_pred HhcCChhHHHHHHHHhcccCccc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
..+|...+|++-+++...+.||.
T Consensus 467 kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCCC
Confidence 99999999999999998888763
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.8e-17 Score=163.39 Aligned_cols=256 Identities=13% Similarity=-0.012 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHh
Q 010057 185 GKYEEALEIFSKMQEAG-VQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLW 262 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 262 (519)
+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+.... ..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--~~-------------------- 365 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--VT-------------------- 365 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cH--------------------
Confidence 56777777777776643 223 2345666666677777777777777776664321 11
Q ss_pred hhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChh
Q 010057 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRD 342 (519)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (519)
..+..+...+...|++++|...++...... ..+...+..+...+...|+++
T Consensus 366 ----------------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 366 ----------------------------QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred ----------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 011223344556677777777777665543 224566777777777888888
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 343 GALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
+|+..|++..+.. +.+...+..+..++.+.|++++|...++..++.. +.++..++.+...+...|++++|.+.|++..
T Consensus 417 ~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 417 QAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877654 2345556677777788888888888888877653 4456677777788888888888888887765
Q ss_pred cCCCCc-h-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 423 EDQKCT-A-------TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 423 ~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...|+. . .++.....+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|..++++..++.+
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 543321 1 11222223344678888888888877663 22344677777888888888888888888776655
No 17
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.5e-16 Score=155.36 Aligned_cols=436 Identities=14% Similarity=0.046 Sum_probs=291.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDR--FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGA 120 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 120 (519)
.|+++.|++.|+...+. .|+. ..+ .++..+...|+.++|...+++.... -..+......+...+...|++++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 47 AGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred CCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 48888888888877533 4442 233 7777777778888888888777721 112233333345677777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 121 VNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 121 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 8888888776322 4556667777788888888888888888765 455555544444444455565688888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH--HHHHHHHhhc--CchhHHHhhhCCCCCcccccch
Q 010057 201 GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVF--KEALQTFKVA--DENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 201 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
. +-+...+..+..+..+.|-...|.++..+-...-...+...+ ..+....... ....... .....+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~---------r~~~~d 268 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE---------RFDIAD 268 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh---------hHHHHH
Confidence 3 225567777778888888877777666543321111110000 0000000000 0000000 000000
Q ss_pred hhhhhHHhcc----CCCC------cchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHH
Q 010057 277 DAVEFVTTDI----EGPL------SIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALL 346 (519)
Q Consensus 277 ~~~~~~~~~~----~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (519)
......+... ..+. ......+..+...++..++...++.+...+......+-..+..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 0011111111 1111 01123455778889999999999999999988777799999999999999999999
Q ss_pred HHHHHHhCC-----CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-----------Cccch---hHHHHHHHHhc
Q 010057 347 AFEYSVKMD-----LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-----------SLGVY---LGALLIHRLGS 407 (519)
Q Consensus 347 ~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~---~~~~l~~~~~~ 407 (519)
+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|++. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999997653 123344467899999999999999999999987321 12211 22345667889
Q ss_pred CCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 408 ARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
.|+..+|++.++.+... |.|......+...+...|++.+|.+.++...... +-+..+......++...+++++|..+.
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999998776 4578899999999999999999999997777662 334566667778889999999999999
Q ss_pred HHhcccCcccc
Q 010057 487 KEKKSIQADAL 497 (519)
Q Consensus 487 ~~~~~~~~~~~ 497 (519)
+.+.+..|+.-
T Consensus 508 ~~l~~~~Pe~~ 518 (822)
T PRK14574 508 DDVISRSPEDI 518 (822)
T ss_pred HHHHhhCCCch
Confidence 99999988754
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=7.2e-17 Score=139.75 Aligned_cols=408 Identities=16% Similarity=0.191 Sum_probs=271.6
Q ss_pred HHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--ChhHH-HHHHHHHHhCC-------------
Q 010057 35 TVNQVLKT--HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK--RISSM-KYVFELMQEKG------------- 96 (519)
Q Consensus 35 ~~~~ll~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a-~~~~~~m~~~~------------- 96 (519)
+-|.++.- .|....+.-+|+.| +..|++.+...-..|++.-+-.+ +..-+ ++-|-.|.+.|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 34444443 37788888899998 57787777777666665433222 22111 12222222221
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 97 ------INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 97 ------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
.+-+..+|..||.++++.-..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|....+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1225678899999999998999999999998888778888999988876543332 778889988888999
Q ss_pred HHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCccCH
Q 010057 171 CYTYTVLMEYLVRAGKYE----EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT-IILILRYMKE----NRLALRY 241 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~~~~~~~ 241 (519)
..|||+++++.++.|+++ .|.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.++.. ..+.|..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 999999999999999775 456677888888999999999999998888887754 3444444433 1222211
Q ss_pred HHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 010057 242 PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKS- 320 (519)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 320 (519)
..+..++...+..+.+..|.+.|..+..-+....
T Consensus 353 ---------------------------------------------p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N 387 (625)
T KOG4422|consen 353 ---------------------------------------------PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN 387 (625)
T ss_pred ---------------------------------------------CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence 1112233444455556666666666655544321
Q ss_pred ---CCcc---HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc
Q 010057 321 ---IQLD---SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 321 ---~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
+.|+ ..-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++..-.+.++-.-++|.+++..|...+
T Consensus 388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 1222 2345677777788888888888888888877778888888888888888888888888888888886666
Q ss_pred chhHHHHHHHHhcCC-Ccc-------------hHHHHhh-------hCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 395 VYLGALLIHRLGSAR-RPV-------------PAAKIFS-------LLPEDQKCTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g-~~~-------------~A~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
......++..+++.. +.. -|..+++ ++..........+...-.+.+.|+.++|.++|..
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 555555555555544 220 1122222 1222122355667777778899999999999998
Q ss_pred HHHCC-CCCCcccHH---HHHHHHHhcCChhHHHHHHHHhccc
Q 010057 454 MCRKG-IHPSLGTFN---VLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 454 m~~~g-~~p~~~t~~---~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+.+ -.|-....+ -+++...+....-.|...++-+...
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 86554 223344444 6666777788888888888877544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=8.6e-17 Score=162.84 Aligned_cols=408 Identities=9% Similarity=-0.030 Sum_probs=298.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010057 33 SYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS 112 (519)
Q Consensus 33 ~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 112 (519)
..-|..+..-.|+.++|++++....... +.+...+..+...+.+.|++++|.++|+...+... .+...+..+..++.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4557788888899999999999885312 55666799999999999999999999999887632 25677888889999
Q ss_pred hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010057 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..|+.++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+...+...+..++|++
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999998772 22455 8888889999999999999999999863 2255566778888888899999999
Q ss_pred HHHHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHc-CCccCHH-HHHHHHHHHhhcCc
Q 010057 193 IFSKMQEAGVQPDK------AACNILIEKCCK-----AGET---RTIILILRYMKEN-RLALRYP-VFKEALQTFKVADE 256 (519)
Q Consensus 193 ~~~~m~~~g~~p~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~~ 256 (519)
.++.... .|+. .....+++.... .+++ +.|+..++.+.+. ...|... .+..+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a--------- 239 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA--------- 239 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH---------
Confidence 8876553 2331 111222222221 1223 5677777766653 1111110 11000
Q ss_pred hhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Q 010057 257 NDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ-LDSAVISTIIEVN 335 (519)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 335 (519)
....+..+...++.++|...|+.+...+.. |+. .-..+..+|
T Consensus 240 ------------------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 240 ------------------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ------------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 000122334668899999999998877543 332 222246688
Q ss_pred hccCChhhHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-----------Cccc---hhH
Q 010057 336 CDHRRRDGALLAFEYSVKMDLNL---ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-----------SLGV---YLG 398 (519)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~ 398 (519)
...|++++|+..|+.+.+..... .......+..++...|++++|.++++.+.+..- .|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987653211 134466677788999999999999999987531 1221 234
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhc
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKL 476 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~ 476 (519)
..+...+...|+.++|+++++++... +.+...+..+...+...|++++|++.+++..+. .|| ...+......+...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHh
Confidence 56677888999999999999998776 445788999999999999999999999999987 465 55556666778999
Q ss_pred CChhHHHHHHHHhcccCcccc
Q 010057 477 GRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 477 g~~~~a~~~~~~~~~~~~~~~ 497 (519)
|++++|+..++++++..|+..
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999998887643
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=5.1e-16 Score=157.45 Aligned_cols=194 Identities=6% Similarity=-0.094 Sum_probs=152.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
.+...|+.+.|...++.+... .|+...+..+..++.+.|+.++|...|+...+.. +.+...+..+.....+.|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 345788888888888886543 3334445566677788899999999998888765 2233334444444556699999
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|...++...+.. |+...+..+...+.+.|+.++|...+++.....| +...++.+..++...|++++|++.|++..+.
T Consensus 595 Al~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 595 ALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999998765 5677888888999999999999999998887755 4678888889999999999999999999887
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
. +-+...+..+..++...|++++|+..+++..++.|+...
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 3 345678888889999999999999999999999886433
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=3.2e-17 Score=148.41 Aligned_cols=379 Identities=12% Similarity=0.102 Sum_probs=303.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc
Q 010057 36 VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVT-YTSVMHWLSNA 114 (519)
Q Consensus 36 ~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~ 114 (519)
+..++..-|++++|+.+++.+.+.+ +.....|..+..++...|+.+.|.+.|.+..+. .|+... .+.+-..+-..
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhh
Confidence 3345566699999999999997543 446788999999999999999999999998876 455443 33445556668
Q ss_pred CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~ 192 (519)
|++++|...+.+..+. .|. ...|+.|...+...|+...|++.|++.... .|+ ...|..|...|...+.++.|..
T Consensus 198 Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred cccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 9999999999988776 444 568999999999999999999999999874 565 4589999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcc
Q 010057 193 IFSKMQEAGVQPD-KAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPE 271 (519)
Q Consensus 193 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 271 (519)
.|.+.... .|+ ...+..+...|...|+++.|+..+++..+..+.
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--------------------------------- 318 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--------------------------------- 318 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------------------------
Confidence 99988764 454 458888888899999999999999988775543
Q ss_pred cccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHH
Q 010057 272 FISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYS 351 (519)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (519)
.+..++.+.......|++.++...+......... .....+.+...|...|.+++|..+|...
T Consensus 319 -----------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 319 -----------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred -----------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2335667777788889999999999887654322 4556788999999999999999999988
Q ss_pred HhCCCCcCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc-chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-c
Q 010057 352 VKMDLNLER-TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG-VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-T 428 (519)
Q Consensus 352 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 428 (519)
.+- .|.- ...+.|...|-+.|++++|..-|++.++-. |+ ...++.+...|...|+.+.|.+.+.+.....|. .
T Consensus 381 l~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 381 LEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred Hhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 764 3443 448899999999999999999999998754 44 457788888899999999999999988776553 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhH
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~ 481 (519)
..++.|...|...|+..+|+.-|+...+. +|| +..+..++.+..-.-+|.+
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 57889999999999999999999998876 677 4456566655433333333
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2.1e-15 Score=130.82 Aligned_cols=411 Identities=10% Similarity=0.088 Sum_probs=282.2
Q ss_pred hHHhhhccCChhHHHHHHHhC---CCCCCHHHHHHHHhc---C---------------------------CChHHHHHHH
Q 010057 7 NVYKILKYSTWDSAQDLLKNL---PIKWDSYTVNQVLKT---H---------------------------PPMEKAWLFF 53 (519)
Q Consensus 7 ~i~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~ll~~---~---------------------------~~~~~A~~~~ 53 (519)
.+...+..|...++.-+++.| ++..+...-..++.- + .+-+.|--+|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~ 200 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLF 200 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHH
Confidence 344566788888888888888 444444443333321 1 0111122223
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 54 NWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
+.. +.+..++.++|.++++....+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|....+.
T Consensus 201 E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 201 ETL------PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred hhc------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 222 567889999999999999999999999999988888899999999987654433 7899999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc--C--C--
Q 010057 134 PTIVSYTAYMKILFLNDRVKE----ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE-ALEIFSKMQEA--G--V-- 202 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~--g--~-- 202 (519)
||..|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++... | +
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788999999999999999999999999888754 55556665542 2 2
Q ss_pred -CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---ccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchh
Q 010057 203 -QP-DKAACNILIEKCCKAGETRTIILILRYMKENRL---ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDND 277 (519)
Q Consensus 203 -~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (519)
.| |...|...+..|.+..+.+.|.++..-++...- .++...
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~---------------------------------- 396 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH---------------------------------- 396 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------------
Confidence 23 455778889999999999999988776654221 011000
Q ss_pred hhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC
Q 010057 278 AVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN 357 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (519)
....+..+....|.....+.....++.|...-.-|+..+...++++....++++-.-+++..+...|..
T Consensus 397 -----------~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 397 -----------RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 001222344455566666666777777777777788888888888887778887777777777777655
Q ss_pred cCHHHHHHHHHHHHhcC-Ccc-------------hHHHHH-------HHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 358 LERTAYLALIGILIKLN-TFP-------------KVAEIV-------EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~-~~~-------------~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
.+...-.-++..+++.. ... -|..++ .++. .........+.+.-.+.+.|+.++|.+
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHH
Confidence 55554444444444443 110 011111 1122 234566777888888999999999999
Q ss_pred HhhhCCcC---CCCchhHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 417 IFSLLPED---QKCTATYT---ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 417 ~~~~~~~~---~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
+|..+.++ -|.....| -++..-.+.+++..|+.+++-|.+.+.+.-...-+-+...|.
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 99877443 13333444 556666778999999999999977753322223334444443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.5e-15 Score=154.04 Aligned_cols=475 Identities=11% Similarity=-0.006 Sum_probs=285.5
Q ss_pred HhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcC---------------------------
Q 010057 9 YKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSR--------------------------- 60 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~--------------------------- 60 (519)
..+.+.|++++|+..+++. ...|+...+..++...+++.+|.++++++....
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eq 165 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPV 165 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHH
Confidence 3455666666666666665 445555555554554556666666666554332
Q ss_pred ----------CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHH
Q 010057 61 ----------GFNHDRFTYTTM-LDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN-AGDVDGAVNIWEEMK 128 (519)
Q Consensus 61 ----------~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~ 128 (519)
...|+..+.... .+.|.+.+++++|.+++..+.+.+.. +..-...|-.+|.. .++ +.+..+++.
T Consensus 166 Al~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~-- 241 (987)
T PRK09782 166 ARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ-- 241 (987)
T ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch--
Confidence 112222222222 44555555555555555555555432 33334444444444 233 444444332
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH------------------------------HH
Q 010057 129 LKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP-PNCYTYT------------------------------VL 177 (519)
Q Consensus 129 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~------------------------------~l 177 (519)
.++-+...+..+...|.+.|+.++|.++++++...-.. |+..++. .+
T Consensus 242 --~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 242 --GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred --hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 12235566667777777777777777777776543111 2222211 22
Q ss_pred HHHHHHcCCHHHHHHHHHHH--------HHcCC--------------------CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKM--------QEAGV--------------------QPDKAACNILIEKCCKAGETRTIILIL 229 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m--------~~~g~--------------------~p~~~~~~~li~~~~~~g~~~~a~~~~ 229 (519)
+..+.+.++++.++++...- .-.+. +-+.....-+--...+.|+.++|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44555566666555443210 00000 113333333444577899999999999
Q ss_pred HHHHHc--CCccCHHHHHHHHHHHhhcCchhHHHhh--h-C---CCCCccc---c-cchhhhhhHHhccCC-----CCcc
Q 010057 230 RYMKEN--RLALRYPVFKEALQTFKVADENDSLLWQ--V-H---PQFSPEF---I-SDNDAVEFVTTDIEG-----PLSI 292 (519)
Q Consensus 230 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~-~---~~~~~~~---~-~~~~~~~~~~~~~~~-----~~~~ 292 (519)
+..... +..++......+...+...+..+...+. + . ....... . .....-......... ....
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 987762 2333444555666777666553322221 1 0 0000000 0 111122222222222 2233
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
+..+...+.. ++..+|...+....... |+......+...+...|++++|...|+.+... +|+...+..+..++.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 4455555555 78888888777665543 55544444455556899999999999987654 3445556677788899
Q ss_pred cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
.|++++|...++...+.. +.....+..+.......|++++|...+++..+..|+...|..+..++.+.|++++|+..|+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999998865 3333344444455556799999999999998877888899999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+..+.. +.+...+..+..++...|+.++|...+++..++.|+.
T Consensus 634 ~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 634 AALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999883 3346677777788999999999999999999988864
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=7.1e-16 Score=156.24 Aligned_cols=407 Identities=9% Similarity=-0.011 Sum_probs=299.2
Q ss_pred hhHHhhhccCChhHHHHHHHhC-CCCCCHH-HHHHH---HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL-PIKWDSY-TVNQV---LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK 80 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~-~~~~l---l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 80 (519)
+-+......|+.++|++++.+. +..|... .+..+ +...|++++|.++|+...... +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 4455667889999999999998 4344433 23333 445599999999999986543 556777888889999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYK 160 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (519)
++++|...++...+... .+.. +..+..++...|+.++|+..+++..+.... +...+..+..++...+..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999988733 2566 888899999999999999999999987432 55666778888889999999999998
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcC
Q 010057 161 EMIQRGLPPNC------YTYTVLMEYLV-----RAGKY---EEALEIFSKMQEA-GVQPDKA-AC----NILIEKCCKAG 220 (519)
Q Consensus 161 ~m~~~g~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g 220 (519)
.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6664 2332 11222222222 22234 7788888888754 2233321 11 11134556779
Q ss_pred ChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHH
Q 010057 221 ETRTIILILRYMKENRLA-LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299 (519)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (519)
++++|...|+.+.+.+.. |+... ..+...
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~--------------------------------------------------~~la~~ 281 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQ--------------------------------------------------RWVASA 281 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHH--------------------------------------------------HHHHHH
Confidence 999999999998886532 22211 113446
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC-----------CcCH---HH
Q 010057 300 LLKKKNLVAIDSLLSGIMDKSIQL---DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL-----------NLER---TA 362 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~ 362 (519)
+...|+.++|...++.+....... .......+..++...|++++|...++.+.+... .|+. ..
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 778899999999999987643221 134566677788999999999999999887531 1332 24
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~ 441 (519)
+..+...+...|++++|+++++.+.... +.+...+..+...+...|++++|++.++++....|+ ...+..+...+.+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 5667788899999999999999998764 556788899999999999999999999998887554 66777888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
|++++|..+++++++. .|+......+-..+
T Consensus 441 ~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999999987 67766554444444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.6e-15 Score=149.47 Aligned_cols=372 Identities=10% Similarity=-0.035 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+......+.+.|++++|...|+...+. .|+...|..+..+|...|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555666677777777777776654 4566667777777777777777777777766652 1145566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------H---------HH-cC
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK-----------------M---------QE-AG 201 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----------------m---------~~-~g 201 (519)
.|++++|+.-|......+-..+. ....++..+........+...++. . .. ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 77777777666555433111111 111111111110000111111100 0 00 00
Q ss_pred CCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccch
Q 010057 202 VQPDK-AACNILIEK---CCKAGETRTIILILRYMKENRL-ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 202 ~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
..+.. ..+..+... ....+++++|.+.|+...+.+. .|....
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~--------------------------------- 332 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI--------------------------------- 332 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH---------------------------------
Confidence 01110 001111111 1234689999999999987652 221111
Q ss_pred hhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC
Q 010057 277 DAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (519)
.+..+...+...|+.++|...++....... -....|..+...+...|++++|+..|+.+.+..
T Consensus 333 ---------------a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 395 (615)
T TIGR00990 333 ---------------ALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN- 395 (615)
T ss_pred ---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 223344567789999999999999876532 135577788888899999999999999998765
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHH
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALI 435 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 435 (519)
+.+...|..+...+...|++++|...|+..++.. +.+...+..+...+.+.|++++|...|+......| ++..|+.+.
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3456788899999999999999999999999875 44566777888899999999999999998876544 578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCccc------HHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGT------FNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++...|++++|++.|++..+..-..+... ++.....+...|++++|.+++++..++.|+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987732111111 111222334469999999999999888664
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.6e-14 Score=143.74 Aligned_cols=407 Identities=11% Similarity=0.021 Sum_probs=282.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..+.|+++.|...|.+..+....-....+ .++..+...|+.++|+..+++.... ..........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999999987433112344 8888899999999999999998721 111222333335688889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999873 235677778889999999999999999999874 566666655555555566776799999999987
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCC---CCccc---ccchhhhhhHHhccCCCCcchhHHHHHHHhcCC---H
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQ---FSPEF---ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN---L 306 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~ 306 (519)
.+. +...+.....++.+.+-.......+... +.... +....+.....-....... .... .
T Consensus 199 ~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~----------~~~r~~~~ 267 (822)
T PRK14574 199 APT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS----------ETERFDIA 267 (822)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc----------chhhHHHH
Confidence 633 3444455556666555444433322211 11100 0011111111000000000 1112 2
Q ss_pred HHHHHHHHHHHhc-CCCcc-----HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHH
Q 010057 307 VAIDSLLSGIMDK-SIQLD-----SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 307 ~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (519)
+.+..-++.+... +..|. ....--.+-++...++..++++.|+.+...+.+....+-..+..+|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3333344444331 22232 12233455577888999999999999999886655567889999999999999999
Q ss_pred HHHHHHHhcCC-----CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-------------C---chhHHHHHHHHH
Q 010057 381 EIVEEMTKAGH-----SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-------------C---TATYTALIGVYF 439 (519)
Q Consensus 381 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~---~~~~~~li~~~~ 439 (519)
.++..+....- +++......|..+|...+++++|..+++.+.+..| | ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999976431 22333357889999999999999999998876433 1 123456788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
..|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++....+.|+....
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 9999999999999998774 6678888899999999999999999999998887765433
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.3e-13 Score=131.78 Aligned_cols=428 Identities=15% Similarity=0.153 Sum_probs=269.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHH
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGIN--IDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.+..+.+.+...-... +.|+...+.|-..|.-.|+++.++.+...+...... .-...|-.+.++|...|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3445556555554333 456677788888888889999999888888765321 123457778888889999999999
Q ss_pred HHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 010057 123 IWEEMKLKECYPTI--VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG----KYEEALEIFSK 196 (519)
Q Consensus 123 ~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~ 196 (519)
.|.+.... .||. ..+--+...+.+.|+++.+...|+..... .+-+..|...|...|...+ ..+.|..++..
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 88877665 3343 34456777888888888888888887765 1224445555555555553 23444444444
Q ss_pred HHHc-------------------------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C
Q 010057 197 MQEA-------------------------------------GVQPDKAACNILIEKCCKAGETRTIILILRYMKEN---R 236 (519)
Q Consensus 197 m~~~-------------------------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 236 (519)
..+. +-.+.+...|.+...+...|+++.|...|...... .
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 3332 22233344444444444555555555555544433 1
Q ss_pred CccCHH-----HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccC-CCCcchhHHHH--HHHhcCCHHH
Q 010057 237 LALRYP-----VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIE-GPLSIDQGLVL--ILLKKKNLVA 308 (519)
Q Consensus 237 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~ 308 (519)
..++.. |....+..+..... ....+...+..... .+.-+...+-. +....+....
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~-----------------~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELH-----------------DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 111110 00111111100000 00111111222222 22222222222 2233467777
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHHHh------------cCC
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM-DLNLERTAYLALIGILIK------------LNT 375 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~ 375 (519)
|...++.....+ ..++..++.+...+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+.
T Consensus 549 a~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 877777766543 224444555555677777788888877666554 223566666666665543 234
Q ss_pred cchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 376 FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
.++|+++|...++.. +.|.+..|-+.-.++.+|++.+|..+|..+.+... +..+|-.+.++|..+|+|..|+++|+.-
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999998876 56888888899999999999999999999887643 5778999999999999999999999876
Q ss_pred HHC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 455 CRK-GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 455 ~~~-g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+. +-.-+......|.+++.+.|.+.+|.+.+.....+.|..
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 554 445578889999999999999999999999888776653
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=7.4e-11 Score=113.45 Aligned_cols=484 Identities=11% Similarity=0.036 Sum_probs=252.2
Q ss_pred hhhHHhhhccCChhHHHHHHHhC-----CCCCCHHHHH-HHHhcCCChHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL-----PIKWDSYTVN-QVLKTHPPMEKAWLFFNWVSRSRGFNH-DRFTYTTMLDIFG 77 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~-----~~~p~~~~~~-~ll~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 77 (519)
++..+.....+++..|+.+|+.. ...||+.+-. .-+-.++..+.|+..|..+.+- .| ++.++..|...-.
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL---DPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHH
Confidence 34444445556666666666653 2223332211 1112335555666666555422 22 2222222222222
Q ss_pred hcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCH
Q 010057 78 EAK---RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY--PTIVSYTAYMKILFLNDRV 152 (519)
Q Consensus 78 ~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~ 152 (519)
... .+..+..++...-+.+-. |+...+.|.+.|.-.|+++.++.+...+...... .-...|-.+.++|-..|++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 222 233444444443333222 5566666777777777777777776666554211 0133466666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNC--YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG----ETRTII 226 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~ 226 (519)
++|...|.+..+. .||. ..+--|...|.+.|+.+.+...|+.+... .+-+..|...|...|+..+ ..+.|.
T Consensus 324 ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 324 EKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 7777777666654 3333 23344666777777777777777777664 1223445556655565554 334444
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhh-hhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 227 LILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAV-EFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
.++....+.. ..+...+..+-..+......-.+ . ....+. .........++.+.+.+...+...|+
T Consensus 401 ~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL-~-----------~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 401 NVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASL-D-----------AYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHH-H-----------HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 4444444332 11222222222222221111100 0 000001 11122223566677778888888888
Q ss_pred HHHHHHHHHHHHhc---CCCccH------HHHHHHHHHHhccCChhhHHHHHHHHHhCCC--------------------
Q 010057 306 LVAIDSLLSGIMDK---SIQLDS------AVISTIIEVNCDHRRRDGALLAFEYSVKMDL-------------------- 356 (519)
Q Consensus 306 ~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 356 (519)
++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+...
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcH
Confidence 88888888765543 122222 1112233333444455566666655544320
Q ss_pred -------------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC-CCccchhHHHHHHHHhc------------CCC
Q 010057 357 -------------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG-HSLGVYLGALLIHRLGS------------ARR 410 (519)
Q Consensus 357 -------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~ 410 (519)
.-++..++.+...+.+...+..|.+-|..+.+.- ..+|+++.-+|.+.|.. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 1222223333333444444444444444333321 12455555555554321 233
Q ss_pred cchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 411 PVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 411 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
.++|.++|.++... +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+..+|...|++..|.+.|+..
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766554 55777778888889999999999999999998853 35668888999999999999999999877
Q ss_pred cccCcccccccccchHHHHhhhh
Q 010057 490 KSIQADALSKDAVPMEEKICDLL 512 (519)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~i~~~~ 512 (519)
....- ..+.+..-+.+....
T Consensus 707 lkkf~---~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 707 LKKFY---KKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHhc---ccCCHHHHHHHHHHH
Confidence 55422 344444444444433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=5.5e-12 Score=110.82 Aligned_cols=428 Identities=12% Similarity=0.092 Sum_probs=266.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhh
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDR-FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA----VTYTSVMHWLSNAGDVDG 119 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 119 (519)
-..+|+..|+-+++.. .-||. ..-..+...+.+...+.+|.+.+......-...+. .+.+.+--.+.+.|+++.
T Consensus 216 m~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3456777777765433 33333 22334455677788899999999887765222222 344445556778999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHHHHHH-----HHHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP------------NCYTYTV-----LMEYLV 182 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------------~~~~~~~-----li~~~~ 182 (519)
|+..|+...+. .||..+--.|+-++.--|+.++..+.|..|..-...| +....+. .++-.-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 99999998776 6787766666667777899999999999998643322 2222222 222222
Q ss_pred HcC--CHHHHHHHHHHHHHcCCCCCHHH-------------HH--------HHHHHHHhcCChHHHHHHHHHHHHcCCcc
Q 010057 183 RAG--KYEEALEIFSKMQEAGVQPDKAA-------------CN--------ILIEKCCKAGETRTIILILRYMKENRLAL 239 (519)
Q Consensus 183 ~~~--~~~~a~~~~~~m~~~g~~p~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (519)
+.+ +.++++-.-..+..--+.||... +. .-..-+.+.|+++.|.+++.-..+.+-..
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 222 22233222222222222232210 00 11235889999999999999888766543
Q ss_pred CHHHHHHHHHH-HhhcCch-hH----------------HHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHH---
Q 010057 240 RYPVFKEALQT-FKVADEN-DS----------------LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL--- 298 (519)
Q Consensus 240 ~~~~~~~~l~~-~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 298 (519)
.+..-..+... |...++. .+ ....-...+....++.+.+..++......+.+-...+..
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 33222111111 1111111 00 011111122222333444455555555554444444333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
.+-..|++++|...|-.+..- +.-+..+...+.+.|-...++.+|++++.+... -++.|+..+.-|...|-+.|+-..
T Consensus 533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhh
Confidence 455677778877777665421 122445566666777777788888888766543 245577778888889999998888
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS-AGSADKALKIYKTMCRK 457 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 457 (519)
|.+.+-+--+. ++.+..+..-|..-|....-+++|+..|++..-..|+..-|..||..|.+ .|++++|+.+|+....+
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87776655442 46677777777777888888899999999887778999999998887665 79999999999988765
Q ss_pred CCCCCcccHHHHHHHHHhcCCh
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~ 479 (519)
++-|..++..|++.|...|..
T Consensus 690 -fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 690 -FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred -CccchHHHHHHHHHhccccch
Confidence 677889999999999888853
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=5.2e-12 Score=118.20 Aligned_cols=294 Identities=11% Similarity=0.094 Sum_probs=209.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVS-YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT--VLMEYLVRAGKYEEA 190 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a 190 (519)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998887765542 12222 333344457889999999999998874 55654333 336688889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCc
Q 010057 191 LEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSP 270 (519)
Q Consensus 191 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 270 (519)
...++.+.+.. +-+...+..+...|.+.|+++.|.+++..+.+.+..+...
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~---------------------------- 223 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH---------------------------- 223 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH----------------------------
Confidence 99999998764 2356688888899999999999999999888865431100
Q ss_pred ccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHH
Q 010057 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEY 350 (519)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (519)
+.++. ...|..++.......+.+...++++.
T Consensus 224 ------------------------------------------~~~l~-------~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 224 ------------------------------------------RAMLE-------QQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred ------------------------------------------HHHHH-------HHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 00000 01222222222333344555555555
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-Cch
Q 010057 351 SVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTA 429 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 429 (519)
+.+. .+.++.....+..++...|+.++|.+++....+. ++++... ++.+....++.+++.+..+...+..| |+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 4332 2456677888899999999999999999998874 3555322 33444456888899988887766544 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+..+...|.+.|++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+++++...+....
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~ 394 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQN 394 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccc
Confidence 7889999999999999999999999987 7999999999999999999999999999887665433
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.1e-11 Score=115.92 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=204.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVT-YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYT--AYMKILFLNDRVKEA 155 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a 155 (519)
.|+++.|++.+....+..- ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5999999988887766532 2333 333345558999999999999999876 45554333 336688899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA-------ACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g~~~~a~~~ 228 (519)
.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999874 3367788899999999999999999999999876543221 112222222222222222222
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHH
Q 010057 229 LRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVA 308 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (519)
++.
T Consensus 252 w~~----------------------------------------------------------------------------- 254 (398)
T PRK10747 252 WKN----------------------------------------------------------------------------- 254 (398)
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 222
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
+.. ..+.+......+..++...|+.++|.++++...+. +|++... ++.+....++.+++.+..+...+
T Consensus 255 -------lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 255 -------QSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred -------CCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 111 11235566677778888889999999999888773 4444221 23334455888889998888887
Q ss_pred cCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 389 AGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.. +-|+....++...+.+.+++++|.+.|+...+..|+...|..+..++.+.|+.++|.+++++-...
T Consensus 323 ~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 323 QH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 64 456667888888899999999999999998888888888889999999999999999999887543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=7.6e-10 Score=102.04 Aligned_cols=381 Identities=14% Similarity=0.041 Sum_probs=210.0
Q ss_pred CChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--
Q 010057 15 STWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL-- 91 (519)
Q Consensus 15 ~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-- 91 (519)
...++|+-++.+. ...|.+.-.-..+....-++.|..+++... ..++.+..+|-+-...=-.+|+.+.+.++.++
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455555555 334444444444444455666777777663 23455666776666666667777777766654
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010057 92 --MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGL 167 (519)
Q Consensus 92 --m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 167 (519)
+...|+..+..-|-.=...|-+.|.+-.+..+.......|+.-. ..||+.-...|.+.+.++-|..+|...++- .
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-f 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-F 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-c
Confidence 34567777777777777777777777777777777666655422 346777777777777777777777777664 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010057 168 PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEA 247 (519)
Q Consensus 168 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 247 (519)
+-+...|......=-..|..+....+|++.... .+-....|.....-+-..||...|..++....+.... +......+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 334556666666666667777777777777664 2234445555556666677777777777776665443 22222222
Q ss_pred HHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HH
Q 010057 248 LQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLD-SA 326 (519)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 326 (519)
+.......+.+..-..+. ......+...++..-+...--.++.++|.+++++..+. .|+ ..
T Consensus 625 vKle~en~e~eraR~lla----------------kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLA----------------KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHhhccccHHHHHHHHH----------------HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 222222222211110000 00011222333333444444455666666666554432 222 22
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLG 406 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (519)
.|..+.+.+-+.++.+.|.+.|..-.+. ++-....|..+...--+.|++-+|..+++...-.+ +.+...|-..|.+-.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 3444444555555555555555433221 12222335555555555566666666666665544 445566666666666
Q ss_pred cCCCcchHHHHhhh
Q 010057 407 SARRPVPAAKIFSL 420 (519)
Q Consensus 407 ~~g~~~~A~~~~~~ 420 (519)
+.|+.+.|..+..+
T Consensus 765 R~gn~~~a~~lmak 778 (913)
T KOG0495|consen 765 RAGNKEQAELLMAK 778 (913)
T ss_pred HcCCHHHHHHHHHH
Confidence 66666666655543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=9.8e-11 Score=111.79 Aligned_cols=352 Identities=11% Similarity=0.099 Sum_probs=224.6
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 42 THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
+.|+.++|.+++.++.+.. +.+...|-.|...|-+.|+.+++...+-..-..... |...|..+-....+.|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 4499999999999998654 667888999999999999999999887555444333 6788999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT----VLMEYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~m 197 (519)
-.|.+..+.. +++...+---...|-+.|+...|.+-|.++.....+.|..-+. .++..+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999998873 3354455556678889999999999999999863222222222 3456677778889999988887
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccch
Q 010057 198 QEA-GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 198 ~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
... +-..+...++.++..+.+...++.+...+..+......++..-+..-- .+.....
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~------------~~~~~~~--------- 365 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE------------RRREEPN--------- 365 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh------------hcccccc---------
Confidence 663 234455678888889999999999988888776644433332210000 0000000
Q ss_pred hhhhhHHhccCCCCcch-hHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 010057 277 DAVEFVTTDIEGPLSID-QGLVLILLKKKNLVAIDSLLSGIMDKS--IQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK 353 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (519)
.+....-..+..+. ..++.+..+.+..+....++.-+.... +.-+...|.-+..+|...|++.+|+.+|..+..
T Consensus 366 ---~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 366 ---ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ---ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 00000000111111 244445555555555555665555555 233445566666666666666666666666665
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 354 MDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
...--+...|-.+..+|...|..++|.+.|...+... +.+...--.|...+.+.|+.++|.+.++.+.
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5433344556666666666666666666666666543 2222233344445556666666666666543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=3.1e-14 Score=127.33 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010057 73 LDIFGEAKRISSMKYVFELMQEKG-INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 73 i~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 151 (519)
...+.+.|++++|.++++...... ..-+...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344444455555555553322221 1112223333333444444555555555554443221 23334444433 34455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKCCKAGETRTIILILR 230 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 230 (519)
+++|.+++....+. .+++..+..++..+.+.++++++.++++.+... ....+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555544443332 133344444444445555555555555544332 122334444444444555555555555544
Q ss_pred HHHH
Q 010057 231 YMKE 234 (519)
Q Consensus 231 ~~~~ 234 (519)
...+
T Consensus 171 ~al~ 174 (280)
T PF13429_consen 171 KALE 174 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.4e-09 Score=96.56 Aligned_cols=392 Identities=11% Similarity=0.075 Sum_probs=251.4
Q ss_pred hhccCChhHHHHHHHhC-CCCCCH--HH--HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010057 11 ILKYSTWDSAQDLLKNL-PIKWDS--YT--VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~-~~~p~~--~~--~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 85 (519)
=.++..+..|..+|++. ..-|-+ .= |..+=...|+...|.++|+... ...|+...|++.|+.=.+.+.++.|
T Consensus 117 Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeiera 193 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERA 193 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666665 222222 11 2222233477777777777553 2477777777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHH
Q 010057 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL----FLNDRVKEATDVYKE 161 (519)
Q Consensus 86 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~ 161 (519)
..+++...-. .|++.+|-...+.=.++|....|..+|+...+. --|...-..+..++ ..+..++.|.-+|.-
T Consensus 194 R~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 194 RSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777654 477777777777777777777777777766543 11222222233333 335556666666666
Q ss_pred HHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH--------HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 162 MIQRGLPPN--CYTYTVLMEYLVRAGKYEEALEIF--------SKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 162 m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~--------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.++. ++-+ ...|..+...=-+.|+.....+.. +.+.+. -+-|-.+|--.++.-...|+.+...++|+.
T Consensus 270 Ald~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 270 ALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6654 2222 344555555445556544443332 222222 233555666666666677777777777777
Q ss_pred HHHcCCccCHHHH-HHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHH
Q 010057 232 MKENRLALRYPVF-KEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAID 310 (519)
Q Consensus 232 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (519)
....-++.....+ ...+-. ..+..+..-....|++.+.
T Consensus 348 AIanvpp~~ekr~W~RYIYL-----------------------------------------WinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYL-----------------------------------------WINYALYEELEAEDVERTR 386 (677)
T ss_pred HHccCCchhHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHhhhHHHHH
Confidence 6654333211111 000000 1233444555678888899
Q ss_pred HHHHHHHhcCCCc-cHHHHHHHHHHH----hccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010057 311 SLLSGIMDKSIQL-DSAVISTIIEVN----CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEE 385 (519)
Q Consensus 311 ~~~~~~~~~~~~~-~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 385 (519)
.+++...+ +.| ...||..+--.| .++.++..|.+++.... |..|-..+|...|..-.+.++++.+..++..
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99988876 344 344555444444 45568889999888776 6778889999999999999999999999999
Q ss_pred HHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 386 MTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK---CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.++.+ +-+..++.-....-...|+.+.|..+|+...+.+. -...|-+.|..-...|.+++|..+|+++++.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99876 45777777777777889999999999998766421 1457778888888899999999999999876
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.1e-14 Score=130.29 Aligned_cols=159 Identities=16% Similarity=0.068 Sum_probs=90.6
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
.++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++...+.. +.+......++..+...
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDM 193 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC
Confidence 33444444555555555555544322 23455556666666777777777777777777654 23455666677777777
Q ss_pred CCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 409 RRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
|+.+++.++++..... +.|+..|..+..+|...|++++|+..|++..+.. +.|+.....+..++...|+.++|.++.+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 7777766666655443 3556778889999999999999999999988763 4578888888899999999999998887
Q ss_pred Hhc
Q 010057 488 EKK 490 (519)
Q Consensus 488 ~~~ 490 (519)
++.
T Consensus 273 ~~~ 275 (280)
T PF13429_consen 273 QAL 275 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 664
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=4.2e-11 Score=112.79 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=58.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIV--SYTAYMKILFLNDRVKE 154 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~ 154 (519)
..|+++.|.+.+....+.. |+. ..+-....+..+.|+.+.|.+.+.+..+. .|+.. ..-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3455555555555544432 222 22223334445555555555555555443 22322 22223445555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
|...++.+.+.. +-+......+...+...|++++|.+++..+.+.+
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 555555555542 1134455555555555555555555555555554
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.2e-11 Score=113.59 Aligned_cols=292 Identities=13% Similarity=0.046 Sum_probs=191.2
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHH
Q 010057 112 SNAGDVDGAVNIWEEMKLKECYPTIV-SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC--YTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~ 188 (519)
...|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 3679999999999887765 34433 3444566778889999999999998875 3454 34444688889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCC
Q 010057 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQF 268 (519)
Q Consensus 189 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (519)
.|...++.+.+.. +-+..++..+...+.+.|+++.|.+++..+.+.++..... +..+-..
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~-~~~l~~~------------------ 230 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE-FADLEQK------------------ 230 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH-HHHHHHH------------------
Confidence 9999999999874 2366688899999999999999999999999987542221 1111000
Q ss_pred CcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHH
Q 010057 269 SPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAF 348 (519)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (519)
.+...+ ..+..+++.+.+
T Consensus 231 ----------------------------------------------------------a~~~~l----~~~~~~~~~~~L 248 (409)
T TIGR00540 231 ----------------------------------------------------------AEIGLL----DEAMADEGIDGL 248 (409)
T ss_pred ----------------------------------------------------------HHHHHH----HHHHHhcCHHHH
Confidence 000000 001111111122
Q ss_pred HHHHhCC---CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchh-HHHHHHH--HhcCCCcchHHHHhhhCC
Q 010057 349 EYSVKMD---LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYL-GALLIHR--LGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 349 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~ 422 (519)
..+.+.. .+.+...+..+...+...|+.++|.++++...+.. |+... ...++.. ....++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 2221111 11244555566666666666666666666666543 22211 0011121 223355566677776655
Q ss_pred cCCC-Cc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 423 EDQK-CT--ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 423 ~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+..| |+ ....++.+.|.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 34 566789999999999999999999644444478988889999999999999999999987633
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=1.2e-08 Score=94.39 Aligned_cols=463 Identities=9% Similarity=0.020 Sum_probs=341.0
Q ss_pred hhHHhhhccCChhHHHHHHHhC--CCCCCHHHHH--HHHh-cCCChHHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHH
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL--PIKWDSYTVN--QVLK-THPPMEKAWLFFNWVS---RSRGFNHDRFTYTTMLDIFG 77 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~--~ll~-~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~li~~~~ 77 (519)
....++.+...++.|..++... .++-+..+|. +.|. +.|+.+....+.+.-. +..|+..+..-|-.=...|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 3455678888899999999987 3444455554 3343 3488888888776544 46788999999999899999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINID--AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..|..-....+......-|+.-. ..||+.-...|.+.+.++-|..+|....+. .+-+...|......=-..|..++.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 99999888888888887776532 458888889999999999999999998776 233667788888777788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
..+|++.... ++-....|....+.+-..|+...|..++....+.... +...|-+-+..-..+.+++.|..+|......
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999886 4445667777778888889999999999998886433 6668889999999999999999999987764
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG 315 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (519)
+. +...+..........+..++..+.+.. ....+.....++-.+-..+-..++++.|...+..
T Consensus 648 sg--TeRv~mKs~~~er~ld~~eeA~rllEe---------------~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 648 SG--TERVWMKSANLERYLDNVEEALRLLEE---------------ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred CC--cchhhHHHhHHHHHhhhHHHHHHHHHH---------------HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 43 333333333222222333322221100 0001111122333344456666777777766654
Q ss_pred HHhcCCCc-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc
Q 010057 316 IMDKSIQL-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 316 ~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
-.. .-| ....|-.+.+.--+.|.+-+|..+|+..+-.+ +-+...|...|+.-.+.|+.+.|..++...++. ++.+
T Consensus 711 G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~s 786 (913)
T KOG0495|consen 711 GTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSS 786 (913)
T ss_pred ccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcc
Confidence 322 223 33345555555567789999999999988776 457778999999999999999999999999876 4677
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
...|..-|....+.++-......+++... |+...-.+...+-...++++|.+.|.+..+.+ +.+..+|.-+..-+.
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~---dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEH---DPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFEL 862 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHH
Confidence 77888888888888887777777766654 57777788888888899999999999999874 344678888888889
Q ss_pred hcCChhHHHHHHHHhcccCccc
Q 010057 475 KLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+.|.-++-.+++.+....+|.+
T Consensus 863 ~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HhCCHHHHHHHHHHHhccCCCC
Confidence 9999999999998888877753
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=5.2e-10 Score=106.98 Aligned_cols=327 Identities=13% Similarity=0.146 Sum_probs=224.7
Q ss_pred hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010057 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..|+.++|.+++.+..+.. +.+...|.+|...|-..|+.+++...+--.-..+ +-|...|..+-....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3388888888888887763 2366788888888888888888776654443332 3356777788888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 193 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
.|.+..+.. +++...+--=...|-+.|+...|..-|.++.+.....+...+...+.
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~----------------------- 284 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR----------------------- 284 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH-----------------------
Confidence 888887753 33444555556677788888888888888877665333333322221
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHhccCChhhHHHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMD-KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYS 351 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (519)
..+..+...++.+.|.+.+..... .+-..+...++.++..+.+...++.|.......
T Consensus 285 ----------------------~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 285 ----------------------RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred ----------------------HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 233444455555656555555443 222334455666777777777777777777766
Q ss_pred HhCCC---------------------------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CccchhHHHHH
Q 010057 352 VKMDL---------------------------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH--SLGVYLGALLI 402 (519)
Q Consensus 352 ~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 402 (519)
..... .++... ..++-++.+....+....+.....+..+ .-+...+.-+.
T Consensus 343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a 421 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLA 421 (895)
T ss_pred hccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHH
Confidence 65211 222222 1223344455555555556666666653 34667888899
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQK--CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~ 479 (519)
++|...|++++|.++|..+...++ +...|-.+..+|...|.++.|++.|++.... .|+ ...-.+|...+.+.|+.
T Consensus 422 ~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 422 DALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNH 499 (895)
T ss_pred HHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCH
Confidence 999999999999999999988754 4668999999999999999999999999877 454 44556677788999999
Q ss_pred hHHHHHHHHhc
Q 010057 480 SDAEIYRKEKK 490 (519)
Q Consensus 480 ~~a~~~~~~~~ 490 (519)
++|.+.++.+.
T Consensus 500 EkalEtL~~~~ 510 (895)
T KOG2076|consen 500 EKALETLEQII 510 (895)
T ss_pred HHHHHHHhccc
Confidence 99999998876
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.2e-10 Score=99.61 Aligned_cols=292 Identities=14% Similarity=0.131 Sum_probs=164.2
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 193 (519)
.|++..|++...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+.-+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665555422 12333444445555666666666666666542234444555555666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccc
Q 010057 194 FSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFI 273 (519)
Q Consensus 194 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (519)
.+++.+.+.. +........++|.+.|++.....++..+.+.+...+...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 6666655422 445566666677777777777777777766665433221100
Q ss_pred cchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 010057 274 SDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK 353 (519)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (519)
...+|..+++-....+..+.-...++..-.
T Consensus 228 --------------------------------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 228 --------------------------------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred --------------------------------------------------HHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 111222222222222223332333333222
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC-CcCCCCchhHH
Q 010057 354 MDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL-PEDQKCTATYT 432 (519)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 432 (519)
. .+-++..-.+++.-+.++|+.++|.++..+..+.+..++. +..-.+.+-++...-++..+.- ...+.++-.+.
T Consensus 258 ~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 258 K-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred H-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 1 1233344445555566666666666666666665544441 1111223334433333333322 22233457788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8888888888888888888877766 78888888888888888888888888887763
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.6e-09 Score=94.93 Aligned_cols=431 Identities=10% Similarity=0.091 Sum_probs=293.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
++...|.++|+.+.... ..+...|--.+..=.++.....|..+|+.....=...| ..|-..+..=-..|++..|.++
T Consensus 87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 67778999999887332 66777888888888999999999999999987633223 2455555555677999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GV 202 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~ 202 (519)
|++-.+. .|+...|++.|+.=.+.+.++.|..+|+...- +.|+..+|......=.++|+...|..+|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998765 89999999999999999999999999999886 4799999999999999999999999999988764 21
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh-hcCchhHHHhhhCCCCCcccccchhhhh
Q 010057 203 -QPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFK-VADENDSLLWQVHPQFSPEFISDNDAVE 280 (519)
Q Consensus 203 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (519)
..+...+.+...-=.++..++.|.-+|.-..+.-+......+-.....+. +.|+...+-..+. ...-..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv---------~KRk~q 310 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV---------GKRKFQ 310 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh---------hhhhhH
Confidence 11223444444444466788999999988777655443333322232322 2222211111000 000001
Q ss_pred hHHhccCCC--CcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--HHHH----HHHHH----HhccCChhhHHHHH
Q 010057 281 FVTTDIEGP--LSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDS--AVIS----TIIEV----NCDHRRRDGALLAF 348 (519)
Q Consensus 281 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~----~li~~----~~~~~~~~~a~~~~ 348 (519)
.-.....++ -..+...+......|+.+...++++..... +.|-. ..|. ..|+. -....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111121 222334555666678888888888887653 33321 1111 11211 13446888888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHH----HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC
Q 010057 349 EYSVKMDLNLERTAYLALIGIL----IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED 424 (519)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 424 (519)
+...+ -++....||.-+=-.| .++.++..|.+++...+ |.-|...++...|..-.+.++++.+..++++..+.
T Consensus 390 q~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 88877 3444555655443333 46788888888888776 44588888888888888888999999999888776
Q ss_pred CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 425 QK-CTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 425 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.| |..+|......-...|+.+.|..+|+-.+.+. .......|...++-=...|.+++|..+++++.+..+
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 44 67888888888788899999999998887662 112234455555555678889999999998877644
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.4e-10 Score=99.35 Aligned_cols=300 Identities=13% Similarity=0.119 Sum_probs=228.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
.|+|..|+++...-.+.+-.| ...|..-..+.-..|+.+.+-..+.+..+..-.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 599999999999988887553 4456666778888999999999999998874456677788888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 159 YKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 159 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
+.++.+.+ +-+.........+|.+.|++.....++..+.+.|+--|...-..=-.+| ..++++....+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~---------~glL~q~~~~~-- 243 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW---------EGLLQQARDDN-- 243 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH---------HHHHHHHhccc--
Confidence 99999875 3367788899999999999999999999999988765544322111222 11222221111
Q ss_pred cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHh
Q 010057 239 LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMD 318 (519)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (519)
+.+.....++...
T Consensus 244 ------------------------------------------------------------------~~~gL~~~W~~~p- 256 (400)
T COG3071 244 ------------------------------------------------------------------GSEGLKTWWKNQP- 256 (400)
T ss_pred ------------------------------------------------------------------cchHHHHHHHhcc-
Confidence 1111111222221
Q ss_pred cCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhH
Q 010057 319 KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLG 398 (519)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 398 (519)
...+-++..-.+++.-+...|+.++|.++.++..+.+..|+ -...-.+.+.++...-.+..+...+.. +.++..+
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~ 331 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLL 331 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHH
Confidence 12344566777888889999999999999999999887776 222334566788888877777776643 4566889
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
.+|...|.+.+.+.+|...|+...+..|+..+|+.+..+|.+.|++.+|.+++++....-.+|+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999988888899999999999999999999999999998765555543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.2e-11 Score=114.27 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE--CYPTIVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
+..+|...|..+..+-.. +..+...+-++|...+++++|.++|+..++.. ..-+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 445556666554443211 33444555566666666666666666665441 011445555555433221 11111
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 159 Y-KEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 159 ~-~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
+ +++.+. -+-.+.+|-++.++|.-.++++.|++.|++..+ +.| ...+|+.+.+=+....++|.|...|+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 1 222221 122455666666666666666666666666555 233 344555555555555555555555554
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.9e-10 Score=96.93 Aligned_cols=290 Identities=11% Similarity=0.115 Sum_probs=177.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT---IVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a 155 (519)
.++.++|.++|-+|.+.... +..+--+|-+.|-+.|..|+|+++.+.+.++---+. ....-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35677777777777764221 344555666777777777777777777765511111 11233455556677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK----AACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
+++|..+.+.|. .-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777777776532 23445666777777777777777777777665433322 1344455555555666666666665
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
..+.+.+-
T Consensus 206 Alqa~~~c------------------------------------------------------------------------ 213 (389)
T COG2956 206 ALQADKKC------------------------------------------------------------------------ 213 (389)
T ss_pred HHhhCccc------------------------------------------------------------------------
Confidence 55433221
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
...--.+.+.+...|+++.|.+.++...+++..--..+...|..+|...|+.++....+..+.+..
T Consensus 214 -------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~- 279 (389)
T COG2956 214 -------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN- 279 (389)
T ss_pred -------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 111112233445677777788888777777655555667777788888888888888888877754
Q ss_pred CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 010057 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS---AGSADKALKIYKTMCRK 457 (519)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 457 (519)
++...-..+.+.-......+.|...+.+-....|+...+..+|..... .|.+.+-+.+++.|...
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333344444444444555666666665555556777777777777654 35566777777777654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.4e-09 Score=94.88 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=156.0
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
...-+...|.-.++-++|...|++..+.+.. ....|+.+..-|...++...|++.|+.+.+.+ +.|...|-.+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3444566788889999999999988765432 45568888888999999999999999999766 557788999999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 450 (519)
-.+...-|+-.|++..+.. +.|..++.+|.++|.+.+++++|++.|.+.... +.+...+..|...|-+.++.++|...
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999875 678999999999999999999999999877654 34567899999999999999999999
Q ss_pred HHHHHHC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 451 YKTMCRK----GIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 451 ~~~m~~~----g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
|++-.+. |..-+ .....-|..-+.+.+++++|..+......
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 8876652 42222 12222234456888899988887765543
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=9.3e-11 Score=103.24 Aligned_cols=417 Identities=12% Similarity=0.066 Sum_probs=263.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHHHCCCCCCh----hhHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYT-SVMHWLSNAGDVDGAVNIWEEMKLKECYPTI----VSYTAYM 143 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li 143 (519)
...|..-|..+....+|...++-+.+...-|+..... .+-..+.+...+.+|++.|+-....-...+. ...+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3444455666677889999999888877777765433 2345677888899999998876654111122 2344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCCHHHHHH
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGV------------QPDKAACNI 211 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------~p~~~~~~~ 211 (519)
-.+.+.|+++.|..-|+...+. .|+..+-..|+-++..-|+.++..+.|..|...-. .|+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678899999999999998876 68988877777788889999999999999976422 233333332
Q ss_pred HHH-----HHHhcCChHHHHHHHH---HHHHcCCcc-------------------------------------CHHHHHH
Q 010057 212 LIE-----KCCKAGETRTIILILR---YMKENRLAL-------------------------------------RYPVFKE 246 (519)
Q Consensus 212 li~-----~~~~~g~~~~a~~~~~---~~~~~~~~~-------------------------------------~~~~~~~ 246 (519)
.|. -.-+... ..|++.+- .+...-+.| +..--..
T Consensus 362 ai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 221 1111111 11111111 111111111 1111122
Q ss_pred HHHHHhhcCchhHH--HhhhCCCCCcc-cccchhhhhhHHhccCCCCcchhH--HHH---HHHhcCCHHHHHHHHHHHHh
Q 010057 247 ALQTFKVADENDSL--LWQVHPQFSPE-FISDNDAVEFVTTDIEGPLSIDQG--LVL---ILLKKKNLVAIDSLLSGIMD 318 (519)
Q Consensus 247 ~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--l~~---~~~~~~~~~~a~~~~~~~~~ 318 (519)
++.++.+....... ...+....... +....++......... ..-++. +.. .....|++++|.+.+.+...
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 22333222211110 00000000000 0011111111111111 111221 111 33456999999999999887
Q ss_pred cCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhH
Q 010057 319 KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLG 398 (519)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 398 (519)
.+..-....|+.-+ .+-..|++++|++.|-++...- ..+...+..+...|....+...|.+++.+.... ++.|+.+.
T Consensus 519 ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 66555556666555 4567899999999998765321 235566777888888899999999988877654 46788899
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH-Hhc
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL-EKL 476 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~-~~~ 476 (519)
+-|.+.|-+.|+-..|.+..-.--.- +.|..+..=|..-|....-+++|+.+|++.-- +.|+..-|..++..| .+.
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 99999999999988888775443332 45677777788889999999999999998754 589999999998766 889
Q ss_pred CChhHHHHHHHHhcccCcc
Q 010057 477 GRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 477 g~~~~a~~~~~~~~~~~~~ 495 (519)
|.+++|..+++..-.-.|+
T Consensus 674 gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ccHHHHHHHHHHHHHhCcc
Confidence 9999999999887655554
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=6.4e-11 Score=112.61 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=52.4
Q ss_pred CccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHH
Q 010057 322 QLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL 401 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (519)
.|++.+|..++.+-..+|+.+.|..++.+|.+.|++.+..-|-.++.+ .++...+..+.+-|...|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 456666666666666666666666666666666666665555555433 55556666666666666666666666655
Q ss_pred HHHHhcCCC
Q 010057 402 IHRLGSARR 410 (519)
Q Consensus 402 ~~~~~~~g~ 410 (519)
+..+.+.|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 555554333
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.1e-10 Score=95.02 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=208.5
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC------YTYTVLMEYLVRAGKY 187 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~~~~ 187 (519)
+++.++|.+.|-+|.+.. +-+..+--+|-+.|-+.|..+.|+.+.+.+.+. ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888888752 113445567788888888899999888888874 442 2334567778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCC
Q 010057 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (519)
|.|+++|..+.+.+. .-.....-|+..|-...+|++|++.-+++.+.+..+...-
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------------------ 178 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------------------ 178 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH------------------------
Confidence 888888888876432 2344667788888888888888888887777554321111
Q ss_pred CCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHH
Q 010057 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLA 347 (519)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (519)
=...|..+...+....+.+.|..+
T Consensus 179 --------------------------------------------------------IAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 179 --------------------------------------------------------IAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 112344555556666788889999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC
Q 010057 348 FEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427 (519)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 427 (519)
+.+..+.+.+ ....=..+.+.....|++..|.+.++...+.+...-+.+...|..+|...|+.++....+..+.+..++
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9888876522 222234566788899999999999999999886667788899999999999999999999998887676
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---CChhHHHHHHHHh
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL---GRVSDAEIYRKEK 489 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~---g~~~~a~~~~~~~ 489 (519)
+..-..+-..-....-.+.|..++.+-... .|+...+.-++..-... |...+....++.|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 777777766666666677788877777666 79998888888766332 3345555555544
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.5e-11 Score=113.51 Aligned_cols=286 Identities=12% Similarity=0.058 Sum_probs=203.7
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010057 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG--LPPNCYTYTVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~ 193 (519)
+..+|...|..+... +.-+.+....+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888885554 22234566678888999999999999999888741 112667788777654322 22222
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 194 FS-KMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 194 ~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
+. .+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+.+..
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~---------------------------------- 453 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR---------------------------------- 453 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc----------------------------------
Confidence 22 22222 2335578999999999999999999998887764432
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
...+|+.+..=+.....+|.|...|+..+
T Consensus 454 ---------------------------------------------------faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 454 ---------------------------------------------------FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred ---------------------------------------------------cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22233333333455567888888888776
Q ss_pred hCCCCcCHHHH---HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCc
Q 010057 353 KMDLNLERTAY---LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCT 428 (519)
Q Consensus 353 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 428 (519)
. +++.+| -.+...|.+.++++.|+-.|+.+.+.+ +.+..+...+...+.+.|+.++|.++++++... +.|+
T Consensus 483 ~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 G----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred c----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 3 444454 456677889999999999999888876 456667777788888999999999999887665 3456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
..--..+..+...+++++|+..++++++. ++-+...+..+...|.+.|..+.|..-|--+.+++|.+..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 66666677777889999999999999987 3334667777888999999999999999888888886543
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=1.6e-10 Score=110.00 Aligned_cols=125 Identities=14% Similarity=-0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC----CCchhHHHHHHHHH
Q 010057 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ----KCTATYTALIGVYF 439 (519)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~ 439 (519)
+.++..|++.-+..+++..-+.....-++ ..|..|++-+....+.++|..+.+++.... -|..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 44555555555555555444443333222 577888888888888888888888775531 24456788888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+.+....+.+++++|.+.-..-+ ..++..+++.....|+.+.-.+..+-+..
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs 593 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS 593 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 88888999999998887522222 44566667777777877777666665444
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.6e-10 Score=97.33 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=198.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHhhc
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA--LRYPVFKEALQTFKVA 254 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 254 (519)
+..++-...+.+++..=.......|+.-+...-+-...+.-...|++.|+.+|+++.+.++- -+..+|..++-+-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34556666678888888888888777655554444455566678999999999999987543 1334444433222111
Q ss_pred CchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 010057 255 DENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (519)
.+.. -.|..+++ --+--+.|...+.+-
T Consensus 313 skLs------------------------------------------------~LA~~v~~-----idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 313 SKLS------------------------------------------------YLAQNVSN-----IDKYRPETCCIIANY 339 (559)
T ss_pred HHHH------------------------------------------------HHHHHHHH-----hccCCccceeeehhH
Confidence 1100 00111111 112234567778888
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchH
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (519)
|.-.++.++|...|+..++.+ +-....|+.+..-|....+...|.+-++..++-. +.|-..|-.|..+|...+...-|
T Consensus 340 YSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHH
Confidence 888899999999999999876 3344569999999999999999999999999875 56888999999999999999999
Q ss_pred HHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 415 AKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 415 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
.-.|++.... |.|+..|.+|..+|.+.++.++|++.|+.....| ..+...+..+...|.+.++.++|.+++++-.+.
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999998886 4578999999999999999999999999999987 336678999999999999999999999987663
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.4e-13 Score=84.24 Aligned_cols=49 Identities=33% Similarity=0.671 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444443
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=8.7e-13 Score=82.40 Aligned_cols=50 Identities=44% Similarity=0.832 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010057 169 PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218 (519)
Q Consensus 169 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 218 (519)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=4.2e-09 Score=90.11 Aligned_cols=207 Identities=10% Similarity=0.041 Sum_probs=132.2
Q ss_pred HhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-----hccCChhhHHHHHHHHHhCCCC
Q 010057 283 TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVN-----CDHRRRDGALLAFEYSVKMDLN 357 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~ 357 (519)
......-+...-.++..|.+.+++.+|..+.+++. ...|-......++.+. .......-|.+.|+..-+.+..
T Consensus 278 P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 278 PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred hHHHhhChHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 33344444555578889999999999999988763 2334444433333322 1222344555666554444332
Q ss_pred cCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHH-HH
Q 010057 358 LERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYT-AL 434 (519)
Q Consensus 358 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-~l 434 (519)
-|... -.++...+.-..++++++-.++.+..-= ..|...--.+..+++..|+..+|+++|-.+.... .|..+|- .|
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSML 434 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHH
Confidence 22211 3344455555667888887777776643 3333344457889999999999999998887653 5667774 46
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 435 IGVYFSAGSADKALKIYKTMCRKGIHPSLGT-FNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++|.++++++-|+.++-++-. +.+..+ +..+...|.+.+.+--|-+.|+.++.++|.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 6789999999988877655432 223333 344456788999988888888888766653
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=7.2e-08 Score=89.21 Aligned_cols=471 Identities=12% Similarity=0.125 Sum_probs=271.1
Q ss_pred hhHHhhhccCChhHHHHHHHhC----CCCCCHHHHH---HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVN---QVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~---~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
.-+..+..+|++...+..|++. ++.-...+|. ..+...+-++.++.++++.. +.++..-+..|..+++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHHHh
Confidence 3344466677777777777765 4333334443 34445677778888888776 3444456777777788
Q ss_pred cCChhHHHHHHHHHHhC----------------------------------------CC--CCC--HHHHHHHHHHHHhc
Q 010057 79 AKRISSMKYVFELMQEK----------------------------------------GI--NID--AVTYTSVMHWLSNA 114 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~----------------------------------------~~--~~~--~~~~~~li~~~~~~ 114 (519)
.+++++|.+.+...... |+ -+| ...|.+|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 88888777666554321 00 111 13578888999999
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-----
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND----------------------RVKEATDVYKEMIQRGL----- 167 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~m~~~g~----- 167 (519)
|.+++|.++|++.... ..++.-|+.+.++|+... +++-.+.-|+.+.+.+.
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 9999999999887654 223444445555444321 12223333444433210
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 168 ------PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP------DKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 168 ------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
+-+...|..-.. ...|+..+....|.+.... +.| -...|..+.+.|-..|+++.|..+|+...+.
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 112223322222 2346677788888887654 222 2246778888899999999999999887665
Q ss_pred CCccCHHHHHHHHHHHhhcC-------chhHHHhhhCC---CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 236 RLALRYPVFKEALQTFKVAD-------ENDSLLWQVHP---QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
... +...+-..+...+ +.+.....+.. .........-+...-.+.-...+..++...+...-..|-
T Consensus 417 ~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 417 PYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred Ccc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 443 2222222222111 11111111110 000000000000001111122334455566666677789
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhc---CCcchHHH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER-TAYLALIGILIKL---NTFPKVAE 381 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~a~~ 381 (519)
++....+++.+.+..+.......|-.+ .+-.+.-++++.++|++-...=..|+. ..|+..+.-+.+. ..++.|..
T Consensus 493 festk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999887765555444322 234555678888888765443223443 3366655555442 46889999
Q ss_pred HHHHHHhcCCCccchhHHHHHHH--HhcCCCcchHHHHhhhCCcCC-C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 382 IVEEMTKAGHSLGVYLGALLIHR--LGSARRPVPAAKIFSLLPEDQ-K--CTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
+|++.++ |++|...-+-.|+-+ =-+.|-...|..++++....- + -...||..|.--+..=-.....++|++.++
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 9999999 777654433222222 234577888999999876642 1 245788877755544344456778888887
Q ss_pred CCCCCCcccHHHHHH---HHHhcCChhHHHHHHHHhcccCc
Q 010057 457 KGIHPSLGTFNVLLA---GLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 457 ~g~~p~~~t~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
. -||...-..-++ .=.+.|..+.|..++..-.++.+
T Consensus 651 ~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 651 S--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred h--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 6 566655444433 23678888999888877766544
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.4e-09 Score=95.54 Aligned_cols=221 Identities=10% Similarity=0.041 Sum_probs=120.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHH
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLL 261 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (519)
.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++..+.|....+.+..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------------------- 392 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------------------- 392 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-----------------------
Confidence 345677777777777776543322 22555666777778888888777776664432
Q ss_pred hhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhccCC
Q 010057 262 WQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL-DSAVISTIIEVNCDHRR 340 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 340 (519)
.+.++.+-...+.-.++++.|..-|+..... .| +...|-.+.-+..+.++
T Consensus 393 ---------------------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 393 ---------------------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred ---------------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHH
Confidence 1223333333444445555555555554332 22 22223333333345556
Q ss_pred hhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-------CccchhHHHHHHHHhcCCCcch
Q 010057 341 RDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-------SLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
+++++..|++..+. ++--+..|+.....+...+++++|.+.|+..++..- .+.+.+.-+++-.- =.+++..
T Consensus 444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~ 521 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHH
Confidence 66666666666543 344455566666666667777777777666664321 11122222222221 1256666
Q ss_pred HHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 414 AAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 414 A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|.+++++..+..| .-..|.+|...-.+.|+.++|+++|++....
T Consensus 522 a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 522 AENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666655433 3456666666666666666666666665443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=2.8e-07 Score=85.47 Aligned_cols=444 Identities=11% Similarity=0.091 Sum_probs=246.2
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 37 NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 37 ~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..++-..|+.......|+...+...+.-....|...+......+-.+-+..++++..+- ++..-+--|..++..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 33333446666666667666655544444556777777777777777777777777664 44446666777777777
Q ss_pred hhhHHHHHHHHHHC------CCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcC
Q 010057 117 VDGAVNIWEEMKLK------ECYPTIVSYTAYMKILFLNDRVKE---ATDVYKEMIQRGLPPNCY--TYTVLMEYLVRAG 185 (519)
Q Consensus 117 ~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~ 185 (519)
+++|.+.+...... .-+.+...|..+.+..+++-+.-. ...+++.+... -+|.. .|++|...|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 77777777666432 112345556666665555443322 23344444332 34443 5778888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCc------hhH
Q 010057 186 KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADE------NDS 259 (519)
Q Consensus 186 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~ 259 (519)
.+++|..+|++.... ..+..-|+.+.++|++..+...+..+=-.-.+.+-.-+...+...+..+...-+ ++.
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 888888888877654 224444555555555432222111111000011111111111111111111000 000
Q ss_pred HHhh-------hCCCCCcccccchhhhhhHH-hc--------cCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 010057 260 LLWQ-------VHPQFSPEFISDNDAVEFVT-TD--------IEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323 (519)
Q Consensus 260 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (519)
..++ -+..+.............++ .. .......+..+...|-..|+++.|..+|++..+-..+-
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 0000 00111111111111111111 11 11334456678888999999999999999876543322
Q ss_pred c---HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC----------c-------CHHHHHHHHHHHHhcCCcchHHHHH
Q 010057 324 D---SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN----------L-------ERTAYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 324 ~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
- ..+|......-.++.+++.|+++.+.....--. | +...|...++.--..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 334555555556667888888888766432111 1 1233556666666778899999999
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCc-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCT-ATYTALIGVYFS---AGSADKALKIYKTMCRK 457 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 457 (519)
+.+++..+... .+.-...-.+-.+.-++++.+++++-... .|++ ..|++.+.-+.+ ..+.+.|..+|++..+
T Consensus 501 driidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 99998775332 22222222344555688999999876664 3443 467777766654 3578999999999998
Q ss_pred CCCCCc-ccHHHHHHHH-HhcCChhHHHHHHHHhc
Q 010057 458 GIHPSL-GTFNVLLAGL-EKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 458 g~~p~~-~t~~~l~~~~-~~~g~~~~a~~~~~~~~ 490 (519)
|.+|.. .|+-.+...+ .+.|....|..+++++-
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677753 3443443444 56788888899888753
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1e-09 Score=95.85 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=91.6
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CccchhHHHHHHHHhcCCCcc
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLGVYLGALLIHRLGSARRPV 412 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 412 (519)
.+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+....+... +.....+..+...+...|+++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 3333444444444444443332 12223344444444555555555555555544211 112233444555556666666
Q ss_pred hHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 413 PAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 413 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+|.+.+++.....| +...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666665544333 3456777888888888999999888888776 344566677777788888888888888877655
Q ss_pred c
Q 010057 492 I 492 (519)
Q Consensus 492 ~ 492 (519)
.
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=9.2e-10 Score=93.01 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=136.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHh
Q 010057 140 TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC-NILIEKCCK 218 (519)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~ 218 (519)
+.+.++|.+.|.+.+|.+.|+.-+.. .|-+.||..|-+.|.+..+++.|+.+|.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34555666666666666666655554 455556666666666666666666666655543 2333333 234445555
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHH
Q 010057 219 AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVL 298 (519)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (519)
.++.++|.++++...+....
T Consensus 303 m~~~~~a~~lYk~vlk~~~~------------------------------------------------------------ 322 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI------------------------------------------------------------ 322 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc------------------------------------------------------------
Confidence 55555555555554442211
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
+......+...|.-.++++-|+.+|+++...|+ -++..|+.+.-+|.-.+++|-
T Consensus 323 -------------------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 323 -------------------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred -------------------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 222222333344555677777777777777774 355667766666666677776
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
++.-|......--.|+. | ...|-.+.......|+..-|.+.|+-....+
T Consensus 377 ~L~sf~RAlstat~~~~------------------a-------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQ------------------A-------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hHHHHHHHHhhccCcch------------------h-------------hhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 66666665543322221 1 2345455555555677777777777666553
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 459 IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 459 ~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
.-....++.+.-.-.+.|++++|..++...++..|+...+
T Consensus 426 -~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 426 -AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred -cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 2235566666666677777777777777777777766555
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.5e-08 Score=88.25 Aligned_cols=461 Identities=11% Similarity=0.002 Sum_probs=267.7
Q ss_pred hhHHhhhccCChhHHHHHHHhC---CCCCCHHHH-HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL---PIKWDSYTV-NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~---~~~p~~~~~-~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 81 (519)
..+.-.+.+.++..|.-+-++. +..|+..-| ..++...+++++|..+...- .. ..-|..+.......+.+..+
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~l--e~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTY-KL--EKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hh--hhhhHHHHHHHHHHHHHHHH
Confidence 3344455566777777777766 333433333 44454557888888776643 12 25677788888888889999
Q ss_pred hhHHHHHHHHHHhC--CC-----------CCCHHH----HHHHH-------HHHHhcCChhhHHHHHHHHHHCCCCCChh
Q 010057 82 ISSMKYVFELMQEK--GI-----------NIDAVT----YTSVM-------HWLSNAGDVDGAVNIWEEMKLKECYPTIV 137 (519)
Q Consensus 82 ~~~a~~~~~~m~~~--~~-----------~~~~~~----~~~li-------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 137 (519)
++.|..++..-... ++ .+|..- -+.-. ..|......++|...|.+.... |..
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~ 173 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAK 173 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chh
Confidence 99999888732110 00 000000 00011 1222333455555555555443 333
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010057 138 SYTAYMKILFLND-RVKEATDVYKEMIQR-GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEK 215 (519)
Q Consensus 138 ~~~~li~~~~~~~-~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 215 (519)
.|..+...-...= ..++-+.+++.+.-. -..-+......+.....-...-+.....-.+-.-.+..-+......-.+-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 3333322211110 011112222210000 00001111111111110000000000000001111233455555666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 216 CCKAGETRTIILILRYMKENRL-ALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
|...+++.+..++.+.+.+..+ .++.-.+..+ .+...++....... .+... .........|.
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia--~l~el~~~n~Lf~l--------------sh~LV-~~yP~~a~sW~ 316 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIA--CLYELGKSNKLFLL--------------SHKLV-DLYPSKALSWF 316 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH--HHHHhcccchHHHH--------------HHHHH-HhCCCCCcchh
Confidence 7777888888888887766543 2333222222 33333332222111 11111 12223344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC--CCCcCHHHHHHHHHHHHh
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM--DLNLERTAYLALIGILIK 372 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 372 (519)
.+...|...+...+|.+.|.+...-+.. =...|-.+..+|+-.|..|+|+..|..+.+. |. .-+..| +..-|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LY--lgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLY--LGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHH--HHHHHHH
Confidence 6777777789999999999986543322 1235667778888899999999999877664 31 112333 4446888
Q ss_pred cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC----CCC----chhHHHHHHHHHhcCCH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED----QKC----TATYTALIGVYFSAGSA 444 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~ 444 (519)
.++...|.++|.+..... +.|+.+.+.+.-.....+.+.+|..+|+..... .+. ..+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999999998764 678888888877777888999999999865422 111 33578899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 445 DKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 445 ~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
++|+..+++.+... +-|..++.++.-.|...|.++.|.+.|.+..-+.|+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99999999998873 6688999999999999999999999999998777764
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.1e-08 Score=89.68 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=134.9
Q ss_pred hccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHH
Q 010057 336 CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415 (519)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (519)
.-.|+.-.|.+-|+...+....++. .|--+...|....+.++....|....+.+ +-++.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 4457888999999998887644433 27777778999999999999999999876 567788888888888889999999
Q ss_pred HHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 416 KIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 416 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.=|++..+..| +...|-.+-.+..+.++++++...|++.+++ ++--+..|+....++...+++++|.+.|++.+++.|
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999988755 5778888888888999999999999999987 455688999999999999999999999999999998
Q ss_pred c
Q 010057 495 D 495 (519)
Q Consensus 495 ~ 495 (519)
.
T Consensus 494 ~ 494 (606)
T KOG0547|consen 494 R 494 (606)
T ss_pred c
Confidence 7
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=3.1e-09 Score=99.31 Aligned_cols=244 Identities=16% Similarity=0.101 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDKA-ACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (519)
..+...|...|...|++++|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++..--.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e------ 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE------ 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH------
Confidence 346666888999999999999998887653 2 123333 233366677788888888888887655110
Q ss_pred HHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 010057 244 FKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323 (519)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (519)
...-....-
T Consensus 273 -----------------------------------------------------------------------~~~G~~h~~ 281 (508)
T KOG1840|consen 273 -----------------------------------------------------------------------EVFGEDHPA 281 (508)
T ss_pred -----------------------------------------------------------------------HhcCCCCHH
Confidence 000000011
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhC-----CCC-cCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhc---CCC-
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKM-----DLN-LERTA-YLALIGILIKLNTFPKVAEIVEEMTKA---GHS- 392 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~- 392 (519)
-..+++.|-.+|++.|++++|...++...+- +.. |.... ++.+...|...+++++|..+++...+. -+.
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 1223444445566666666666555544331 211 22222 666666777777777777777765531 111
Q ss_pred ---ccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-----C---C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 010057 393 ---LGVYLGALLIHRLGSARRPVPAAKIFSLLPED-----Q---K-CTATYTALIGVYFSAGSADKALKIYKTMCR---- 456 (519)
Q Consensus 393 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 456 (519)
.-..+++.|...|.+.|++++|+++++.+... . + ....++.|..+|.+.+++.+|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 22456677777788888888888887755332 1 1 134667888888888888888888877432
Q ss_pred CCC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 457 KGI-HPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 457 ~g~-~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
.|. .|+ ..+|..|...|...|++++|+++.+.+..
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 331 122 35677888888999999999888877653
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=1.1e-07 Score=88.16 Aligned_cols=441 Identities=12% Similarity=0.093 Sum_probs=271.5
Q ss_pred hhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHh-cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 010057 6 SNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLK-THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK 80 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 80 (519)
.++..+-..+++..-++..+.+ +-.+++...--+.- ..|+.++|.+..+...+. -..+.+.|+.+.-.+....
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhh
Confidence 3444444556666655555544 55556555554443 449999999999887643 3667788999888888889
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYK 160 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (519)
++++|.+.|....+.+.. |..+|.-+--.-++.|+++.......++.+.. +-....|..+..++.-.|+...|..+++
T Consensus 90 ~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543 67777777666677788888888888877662 1145678888888888999999999998
Q ss_pred HHHHCC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 161 EMIQRG-LPPNCYTYTVLME------YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 161 ~m~~~g-~~p~~~~~~~li~------~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
+..+.. -.|+...|..... ...+.|..++|.+.+...... +.-....-.+-...+.+.+++++|..++..+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 888753 3566666654332 344566777777766555432 11111222334556777888888888888887
Q ss_pred HcCCccCHHHHHHHHHH-HhhcCchhHHH-------hhhCC----------CCCcccccchhhhhhHHhc-cCCCCcchh
Q 010057 234 ENRLALRYPVFKEALQT-FKVADENDSLL-------WQVHP----------QFSPEFISDNDAVEFVTTD-IEGPLSIDQ 294 (519)
Q Consensus 234 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 294 (519)
...+ +...|...+.. +......-... ++..+ .+....-.......+.... ..+-+.+..
T Consensus 247 ~rnP--dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 247 ERNP--DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred hhCc--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 7553 33333322222 21111110000 00000 0000101112222232222 233344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hcC----------CCccHH--HHHHHHHHHhccCChhhHHHHHHHHHhCCCCc
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIM----DKS----------IQLDSA--VISTIIEVNCDHRRRDGALLAFEYSVKMDLNL 358 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (519)
.+...|-......-..++...+. ..+ -.|... ++--++..+-..|+++.|+.+++....+ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 45444433322221122222211 111 133333 4456777888999999999999988754 45
Q ss_pred CHH-HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCch--------
Q 010057 359 ERT-AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA-------- 429 (519)
Q Consensus 359 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 429 (519)
+.. .|..=.+.+...|+++.|..++.+..+.+ .+|..+-.--..-..+.++.++|.++.......+-+..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 543 36666788899999999999999998876 46666655666667788999999999888776543222
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 010057 430 TYTAL--IGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 430 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.|-.+ ..+|.+.|++..|++=|.....
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 33332 4568888888888876665543
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.5e-08 Score=99.49 Aligned_cols=146 Identities=9% Similarity=-0.014 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKE 161 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (519)
+++|...++...+.... +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555554322 34445555555555555555555555555442 11234445555555555555555555555
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 162 MIQRGLPPNC-YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 162 m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
..+. .|+. ..+..++..+...|++++|...+++..... .| +...+..+..++...|++++|...+..+
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5543 2221 122222333444455555555555544331 12 2223444444555555555555555443
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.6e-08 Score=99.31 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...++.+.+...+.++..+..+..+
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 345566667788889999999999998876533 2223333444566678899999998888765423345556677778
Q ss_pred HhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhcCChhHH
Q 010057 405 LGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRK-GIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
+...|+.++|...++++....|+ ....+.+...|...| ++|...++.+.+. .-.|....+ +-..+.-.|+.+.+
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~ 526 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAE 526 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHH
Confidence 88899999999999887665444 444566666777777 4788877777654 223333333 33445556777666
Q ss_pred HHHHHHhccc
Q 010057 483 EIYRKEKKSI 492 (519)
Q Consensus 483 ~~~~~~~~~~ 492 (519)
..+ +++.+-
T Consensus 527 ~~~-~~~~~~ 535 (553)
T PRK12370 527 KMW-NKFKNE 535 (553)
T ss_pred HHH-HHhhcc
Confidence 666 666554
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=1.8e-08 Score=87.89 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=147.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|++++|.+.++...+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+...|++++|..
T Consensus 44 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred CCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHH
Confidence 489999999998886432 445677888888899999999999999988876533 56678888888899999999999
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 123 IWEEMKLKECYP-TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 123 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
.|++.......| ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 198 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT- 198 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999987653222 34566777888889999999999999888753 235667888888899999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 202 VQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344566777778888888999999888777654
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.7e-07 Score=83.21 Aligned_cols=459 Identities=11% Similarity=0.055 Sum_probs=252.4
Q ss_pred chhhhhHHhhhccCChhHHHHHHHhC-CCCCCHH-H-HHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010057 2 RDTISNVYKILKYSTWDSAQDLLKNL-PIKWDSY-T-VNQVLKT--HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIF 76 (519)
Q Consensus 2 ~~~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~-~-~~~ll~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 76 (519)
++++..+..+..+|++++|.+...++ .+-||.. . ...++.. .+.+++|+.+.+.- .+...+..-+ +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~--fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFF--FEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhh--HHHHH
Confidence 35778888899999999999999988 4334432 2 2333332 27788888555432 1111111111 23344
Q ss_pred --HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHH
Q 010057 77 --GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF-LNDRVK 153 (519)
Q Consensus 77 --~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~ 153 (519)
.+.+..++|...++...+. +..+...-.+.+-+.|++++|..+|+.+.+.+. ..+..-+.+-+ ..+..-
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHhh
Confidence 4678899999888733322 444666667788899999999999999977632 22222222111 000001
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHc-------C------CCCCHH-HHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLME---YLVRAGKYEEALEIFSKMQEA-------G------VQPDKA-ACNILIEKC 216 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~-------g------~~p~~~-~~~~li~~~ 216 (519)
.+. .+......| ..+|..+.+ .+...|++.+|+++++...+. + +.-... .-.-|...+
T Consensus 160 ~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111 122222233 224444333 456789999999999887221 1 111111 112244456
Q ss_pred HhcCChHHHHHHHHHHHHcCCcc--CHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhc-cCCCCcch
Q 010057 217 CKAGETRTIILILRYMKENRLAL--RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTD-IEGPLSID 293 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 293 (519)
-..|+.++|..++....+....- ...+...-|.++.......+- ..+.. .......-...+.... ......+.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~-~~l~~---k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG-DLLKS---KKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCch-HHHHH---HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67899999999999988876542 112222222222211111000 00000 0000000000000000 00111122
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc--CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH--RRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
...+......+..+.+.++...+. +.. ....+..++..+.+. ..+..+.+++...-+....-........+....
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp--~~~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLP--GMS-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCC--ccC-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 222222222233333333333221 122 234455555544332 246677777776665443333455667788889
Q ss_pred hcCCcchHHHHHH--------HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC----CCC----chhHHHHH
Q 010057 372 KLNTFPKVAEIVE--------EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED----QKC----TATYTALI 435 (519)
Q Consensus 372 ~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~li 435 (519)
..|+++.|.+++. .+.+.+. .+.+..+++..+.+.++.+.|..++...... .+. ..++..+.
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 9999999999999 5555544 4445667788888888877777777654321 111 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
..-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|+.+-+++
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 56677899999999999999864 78899999999999885 577888877554
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.1e-09 Score=89.87 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT-VLMEYL 181 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~ 181 (519)
--+.+-.+|.+.|.+.+|...|+.-.+. .|-..||..|-++|.+..++..|+.+|.+-++. .|-.+||. -+.+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 3467889999999999999999998876 567889999999999999999999999998875 56556654 567788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
-..++.++|.++|+...+.. ..++....++...|.-.++++.|+.+++.+.+.|+.
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 88999999999999998863 335667777778888899999999999999998865
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1.3e-08 Score=95.14 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=170.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-C
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQR-----GL-PPNCYT-YTVLMEYLVRAGKYEEALEIFSKMQEA-----G-V 202 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~ 202 (519)
..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999887653 21 233332 334677889999999999999998642 2 2
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 203 QPDK-AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 203 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
.|.. .+++.|..+|.+.|++++|...++...+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------------------------- 311 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------------------------- 311 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------------------------
Confidence 2322 3777788899999999999999887654
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhccCChhhHHHHHHHHHhC---CCC
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLD-SAVISTIIEVNCDHRRRDGALLAFEYSVKM---DLN 357 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~ 357 (519)
++.... ....|. ...++.+...++..+++++|..+++...+. -+.
T Consensus 312 ------------------------------I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 312 ------------------------------IYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred ------------------------------HHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 111100 000111 122455566677778888888888766543 122
Q ss_pred cC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CCC---ccchhHHHHHHHHhcCCCcchHHHHhhhCCc---
Q 010057 358 LE----RTAYLALIGILIKLNTFPKVAEIVEEMTKA----GHS---LGVYLGALLIHRLGSARRPVPAAKIFSLLPE--- 423 (519)
Q Consensus 358 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 423 (519)
++ ..+++.+...|...|++++|+++++.++.. +.. -....++.+...|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 345899999999999999999999998742 111 1244567778889999999999999875432
Q ss_pred -CCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 424 -DQKC----TATYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 424 -~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
-+|+ ..+|..|...|.+.|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1333 4688999999999999999999988775
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=3.5e-07 Score=86.87 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=84.7
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc-
Q 010057 37 NQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTY-TSVMHWLSNA- 114 (519)
Q Consensus 37 ~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~- 114 (519)
+.++...|++++|++.++.-. ..+.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 466666788888888887642 3334445556777777788888888888888888874 444444 4444444222
Q ss_pred ----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010057 115 ----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRV-KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEE 189 (519)
Q Consensus 115 ----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 189 (519)
.+.+...++++++... -|...+...+.-.+.....+ ..+...+..+...|+++ +|+.|-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 2456667777777655 23333333332222221222 23445556666666553 45555555554444444
Q ss_pred HHHHHHHH
Q 010057 190 ALEIFSKM 197 (519)
Q Consensus 190 a~~~~~~m 197 (519)
..+++...
T Consensus 162 i~~l~~~~ 169 (517)
T PF12569_consen 162 IESLVEEY 169 (517)
T ss_pred HHHHHHHH
Confidence 44444443
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.6e-06 Score=76.34 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH-HHH-hcCCCc
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI-HRL-GSARRP 411 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~ 411 (519)
.+...+++++|.-.|+...... +-+..+|..++.+|...|.+.+|.-.-+...+. ++.+..+.+.+. ..+ -....-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 3444566666666666665433 234556667777777667666665555544432 122332222221 111 111223
Q ss_pred chHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 412 VPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 412 ~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
++|.++++......|+ ....+.+...+...|..++++.++++-... .||....+.+...+.....+++|...|....
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5566666655554444 334455556666666777777777666554 5666666666666666666777766666666
Q ss_pred ccCcc
Q 010057 491 SIQAD 495 (519)
Q Consensus 491 ~~~~~ 495 (519)
.++|.
T Consensus 499 r~dP~ 503 (564)
T KOG1174|consen 499 RQDPK 503 (564)
T ss_pred hcCcc
Confidence 66553
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.12 E-value=1.4e-06 Score=81.11 Aligned_cols=400 Identities=12% Similarity=0.081 Sum_probs=238.8
Q ss_pred HHHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 36 VNQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 36 ~~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
|-.++..+ +++...+.+.+.+.+ +++--..+.....-.+...|+.++|......-.+..+. +.+.|+.+.-.+-.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44445544 677777777777764 33444555555555566678888888888877776555 67788888777777
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..++++|+..|......+. -|...|.-+--.-++.++++.....-.++.+. .| ....|..+..++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988877642 26677777766777778888877777777764 33 44567777778888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhC
Q 010057 193 IFSKMQEAG-VQPDKAACNILI------EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVH 265 (519)
Q Consensus 193 ~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (519)
++++..+.. -.|+...|.-.. ....+.|.++.|.+.+..-...-+.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--------------------------- 217 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--------------------------- 217 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------------------------
Confidence 888887653 345655554332 2344556666666665543321100
Q ss_pred CCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HhccCChhhH
Q 010057 266 PQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV-NCDHRRRDGA 344 (519)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 344 (519)
...+...-...+.+.+++++|..++..+... .||..-|...... +.+-.+.-++
T Consensus 218 -----------------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 218 -----------------------KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred -----------------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 0011222344677888999999999888765 4666666654443 3333333344
Q ss_pred H-HHHHHHHhCC---CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch----HHH
Q 010057 345 L-LAFEYSVKMD---LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP----AAK 416 (519)
Q Consensus 345 ~-~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~ 416 (519)
+ .+|....+.- -.|-....+.+ ....-.+..-+++..+.+.|+++-. ..+...|-.-...+- +..
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~ 345 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTS 345 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHH
Confidence 4 5555554431 11111111111 1112223344555566666654322 222222211111110 111
Q ss_pred HhhhCC------------cCCCCchhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhH
Q 010057 417 IFSLLP------------EDQKCTATYT--ALIGVYFSAGSADKALKIYKTMCRKGIHPSL-GTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 417 ~~~~~~------------~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~ 481 (519)
+...+. ..+|....|. -++..|-+.|+++.|..+++..+.+ .|+. ..|..=.+.+.+.|+.++
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHH
Confidence 111111 1245444454 4667778889999999999888866 6653 334444578888899999
Q ss_pred HHHHHHHhcccCccccccccc
Q 010057 482 AEIYRKEKKSIQADALSKDAV 502 (519)
Q Consensus 482 a~~~~~~~~~~~~~~~~~~~~ 502 (519)
|..++++..+++..+...|..
T Consensus 424 Aa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 424 AAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred HHHHHHHHHhccchhHHHHHH
Confidence 999999888887665555433
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.7e-07 Score=88.96 Aligned_cols=421 Identities=14% Similarity=0.077 Sum_probs=258.9
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHh----cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLK----THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFG- 77 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~- 77 (519)
++-.+..+...|++++|++.++.. ..-+|...+..... ..|+.++|..+|+.+... .|+...|-..+..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHh
Confidence 456667788899999999999987 55567777665544 449999999999999754 565555544444443
Q ss_pred hc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010057 78 EA-----KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV-DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 78 ~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 151 (519)
.. .+.+...++++.+.+.- |.......+.-.+..-..+ ..+...+..+...|++ .+|+.|-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 22 25677888999887763 3333332222222221122 3455566666777754 466667677776666
Q ss_pred HHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 010057 152 VKEATDVYKEMIQR----G----------LPPNCY--TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD-KAACNILIE 214 (519)
Q Consensus 152 ~~~a~~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 214 (519)
.+-..+++...... + -+|+.. ++.-+...|-..|++++|+++++..+++ .|+ +..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 134443 4566788899999999999999999986 566 558888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
.+-..|++.+|.+.++.....+.. +..+.+
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~--------------------------------------------------DRyiNs 266 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA--------------------------------------------------DRYINS 266 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh--------------------------------------------------hHHHHH
Confidence 999999999999999988875543 222445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--------HHHHHHHHHHhccCChhhHHHHHHHHHhC-----CCCcCH-
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDS--------AVISTIIEVNCDHRRRDGALLAFEYSVKM-----DLNLER- 360 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~- 360 (519)
..+..+.+.|++++|..++......+..|.. ........+|.+.|++..|++.|....+. .-+.|-
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 5677888999999999999998877754432 23456677889999999999888776553 112222
Q ss_pred ---------HHHHHHHHHHHhcCC-------cchHHHHHHHHHhcCCCcc---c---------hhHHHHHHHH---hcCC
Q 010057 361 ---------TAYLALIGILIKLNT-------FPKVAEIVEEMTKAGHSLG---V---------YLGALLIHRL---GSAR 409 (519)
Q Consensus 361 ---------~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~---~---------~~~~~l~~~~---~~~g 409 (519)
.+|..+++..-+... ...|.+++-.+.+...... . .--..+..-- .+..
T Consensus 347 ~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 347 SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 333333333222211 1234555555543321100 0 0000000000 0011
Q ss_pred CcchHHHHhhh-----------CCc---CCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 410 RPVPAAKIFSL-----------LPE---DQKCTATYTALIGVYFSA-GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 410 ~~~~A~~~~~~-----------~~~---~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
.-+++...-.. ... .+.|... ...-+.+. .=.++|.++++-+.+.+ +-+..||......|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~ 502 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYL 502 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHH
Confidence 11111111000 000 0112211 12223333 35677889888888885 456789999999999
Q ss_pred hcCChhHHHHHHHH
Q 010057 475 KLGRVSDAEIYRKE 488 (519)
Q Consensus 475 ~~g~~~~a~~~~~~ 488 (519)
+.|++-.|.+.+.+
T Consensus 503 Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 503 RKGKYLLALQALKK 516 (517)
T ss_pred hcCcHHHHHHHHHh
Confidence 99999888887754
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-06 Score=80.43 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
+.........-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4445555556666777888888888877765 2446666666677777777777777666777765 3335667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPD-KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.|.-.|..++|.+.|...... .|. ...|-.....|+-.|..++|+..+...-+
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 777778888888888776543 222 23677777778777888877777665433
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1e-06 Score=74.10 Aligned_cols=190 Identities=15% Similarity=0.083 Sum_probs=100.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 299 ILLKKKNLVAIDSLLSGIMDK-SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
.+.+.++.+.|.+.+..|..+ ....|++|...+.-. -..+++.+..+-+.-+...+. -...||..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHh
Confidence 456678888888888887654 234466665544322 223556666666666666653 45678999999999998888
Q ss_pred hHHHHHHHHHhcCC-CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCC---HHHHHHHHH
Q 010057 378 KVAEIVEEMTKAGH-SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGS---ADKALKIYK 452 (519)
Q Consensus 378 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~---~~~A~~~~~ 452 (519)
.|..++.+-...-+ -.+.+.|+.|=.........++|.+-++.+.+.-. ......+=+.--...++ ...|++-++
T Consensus 328 lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd 407 (459)
T KOG4340|consen 328 LAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYD 407 (459)
T ss_pred HHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88877766433222 13444554332223334456666655544432100 00000011111111111 112223333
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
+..+.- ....-+-...|++..++..+++.|+..-+...
T Consensus 408 ~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 408 ETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 333221 11222334556788889999999987665444
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=1.3e-06 Score=78.38 Aligned_cols=151 Identities=15% Similarity=0.050 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHD--RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|+...+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 3445566666555533323332 234566666666777777777777777665432 4667777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
..|++..+.... +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777776655211 3456666666666777777777777776664 3332211222222334556777777775544
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=2.5e-05 Score=74.57 Aligned_cols=130 Identities=16% Similarity=0.084 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~ 441 (519)
|......+.+.++.++|...+.+..+.. +..+..|......+...|...+|.+.|.......|+ +.+-.++..++.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 5556666777777777766666665543 345556666666677778888888888766655454 55677888888888
Q ss_pred CCHHHHHH--HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 442 GSADKALK--IYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 442 g~~~~A~~--~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|+..-|.. ++..+.+.+ +-+...|-.+...+.+.|+.+.|.+.|....++++
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 87777777 888888775 55677888888888888888888888887777755
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=9.3e-06 Score=70.19 Aligned_cols=112 Identities=9% Similarity=0.039 Sum_probs=67.2
Q ss_pred HHhhhccCChhHHHHHHHhC-CC-CCCHHHHHHHHhcC----CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 010057 8 VYKILKYSTWDSAQDLLKNL-PI-KWDSYTVNQVLKTH----PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR 81 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~ll~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 81 (519)
+..++.+.++..|+.+++-- .. +-.......-|..| |++++|...|..+..+. .|+...+..|.-.+--.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 45677888999999998854 11 11222334444443 99999999999886544 6666666666655556688
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 126 (519)
+.+|..+-....+. +-.-..|+....+.|+-++-..+...
T Consensus 107 Y~eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888776544432 22233333444444554444444333
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.4e-06 Score=70.65 Aligned_cols=189 Identities=15% Similarity=0.057 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
+...|.-.|.+.|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|+........ +..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4556677888999999999999999987433 5668888889999999999999999998876322 5677888888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 226 (519)
..|++++|.+.|++....-.-| -..+|..+.-+..+.|+.+.|...|++-.+.... ...+...+.+...+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988753222 2457888888888999999999999998876322 3346778888888999999999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHH
Q 010057 227 LILRYMKENRLALRYPVFKEALQTFKVADENDSL 260 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (519)
.+++.....+. ++...+...++.-...++.+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHH
Confidence 99998888777 7777777777777777766544
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=4.5e-07 Score=81.41 Aligned_cols=229 Identities=12% Similarity=-0.058 Sum_probs=148.3
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 148 LNDRVKEATDVYKEMIQRG-LPPN--CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
..+..+.+..-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466677888888877532 2222 3457777778888888888888888887753 2256688888888888888888
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|...|+...+....
T Consensus 117 A~~~~~~Al~l~P~------------------------------------------------------------------ 130 (296)
T PRK11189 117 AYEAFDSVLELDPT------------------------------------------------------------------ 130 (296)
T ss_pred HHHHHHHHHHhCCC------------------------------------------------------------------
Confidence 88888876653221
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
+...+..+..++...|++++|++.|+...+.. |+..........+...++.++|...+.
T Consensus 131 -------------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 131 -------------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred -------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 34456677777888899999999999988764 332222222223445678899999987
Q ss_pred HHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC---cCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 385 EMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP---EDQ-----KCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
...... .++... ..+.. ...|+..++ +.++.+. +.. .....|..+...+.+.|++++|+..|++..+
T Consensus 190 ~~~~~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYEKL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhhC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 655432 233222 22222 234555444 2333322 111 1245788889999999999999999999887
Q ss_pred CCCCCCcccHHHHH
Q 010057 457 KGIHPSLGTFNVLL 470 (519)
Q Consensus 457 ~g~~p~~~t~~~l~ 470 (519)
.+ +||.+-+...+
T Consensus 265 ~~-~~~~~e~~~~~ 277 (296)
T PRK11189 265 NN-VYNFVEHRYAL 277 (296)
T ss_pred hC-CchHHHHHHHH
Confidence 75 44555444433
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.9e-05 Score=71.91 Aligned_cols=420 Identities=12% Similarity=0.080 Sum_probs=231.9
Q ss_pred HHhhhccCChhHHHHHHHhCCC--CCCHHHHHHHH--hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChh
Q 010057 8 VYKILKYSTWDSAQDLLKNLPI--KWDSYTVNQVL--KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS 83 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~~~--~p~~~~~~~ll--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 83 (519)
+..+++.+++++|+.+.+.-+. .-+.+.|.-.- ...+..++|+..++-.. +.+..+...-...|.+.|+++
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHH
Confidence 4557888999999988886532 22222233332 23389999999888432 334556777778889999999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH---HHHHhcCCHHHHHHHH
Q 010057 84 SMKYVFELMQEKGINI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM---KILFLNDRVKEATDVY 159 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~ 159 (519)
++.++|..+.+.+..- +...-..++.+-.. -.+. .+......| ..+|..+- ..+...|++.+|++++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999998875431 11122222222111 1111 222222233 33444433 3567899999999999
Q ss_pred HHHHHC-------C------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCC
Q 010057 160 KEMIQR-------G------LPPNCY-TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC----NILIEKCCKAGE 221 (519)
Q Consensus 160 ~~m~~~-------g------~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~ 221 (519)
+..... + +.-+.. .-..|.-.+...|+-++|.+++..++... .+|.... |.|+..-....-
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~ 277 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNY 277 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhcccccc
Confidence 988321 1 111111 12234456778899999999999998764 3444322 222222111111
Q ss_pred hH-HHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhcc-CCCCcchhHHHHH
Q 010057 222 TR-TIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDI-EGPLSIDQGLVLI 299 (519)
Q Consensus 222 ~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 299 (519)
++ .++..++........ .... .+. ..+...+.+... .........++......... ..+..+...++..
T Consensus 278 ~d~~~l~~k~~~~~~l~~---~~l~----~Ls-~~qk~~i~~N~~-lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~ 348 (652)
T KOG2376|consen 278 FDGDLLKSKKSQVFKLAE---FLLS----KLS-KKQKQAIYRNNA-LLALFTNKMDQVRELSASLPGMSPESLFPILLQE 348 (652)
T ss_pred CchHHHHHHHHHHHHhHH---HHHH----HHH-HHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHH
Confidence 22 122222221111000 0000 000 000000000000 00000000011111111111 1222333334432
Q ss_pred HH--hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHH--------HHHhCCCCcCHHHHHHHHHH
Q 010057 300 LL--KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFE--------YSVKMDLNLERTAYLALIGI 369 (519)
Q Consensus 300 ~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~ 369 (519)
.. +.....++..++....+....-...+.-..++.....|+++.|++++. .+.+.+..| .+...+...
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l 426 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVAL 426 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHH
Confidence 22 223466777777777665544445667777888899999999999999 444444444 556667778
Q ss_pred HHhcCCcchHHHHHHHHHhc--CCCccch----hHHHHHHHHhcCCCcchHHHHhhhCCc-CCCCchhHHHHHHHHHhcC
Q 010057 370 LIKLNTFPKVAEIVEEMTKA--GHSLGVY----LGALLIHRLGSARRPVPAAKIFSLLPE-DQKCTATYTALIGVYFSAG 442 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g 442 (519)
+.+.++-+.|..++....+. .-.+... ++.-+...-.+.|+.++|..+++++.+ .++|..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~- 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL- 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-
Confidence 88888888888888887642 1112222 233334444567999999999999988 577888999999999988
Q ss_pred CHHHHHHHHHHH
Q 010057 443 SADKALKIYKTM 454 (519)
Q Consensus 443 ~~~~A~~~~~~m 454 (519)
+++.|..+-+.+
T Consensus 506 d~eka~~l~k~L 517 (652)
T KOG2376|consen 506 DPEKAESLSKKL 517 (652)
T ss_pred CHHHHHHHhhcC
Confidence 778888876654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=5.9e-07 Score=72.83 Aligned_cols=199 Identities=11% Similarity=-0.033 Sum_probs=165.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
-.+...|...|+...|..-+++..+.+.. ...++..+...|.+.|..+.|.+.|+...... +-+-...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 35677999999999999999998876532 55678888888999999999999999998765 33455677777778999
Q ss_pred CCcchHHHHHHHHHhcCCCc-cchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSL-GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
|++++|.+.|+.......-+ -..++..+.-+..+.|+++.|.+.|++..+..| .+.+.-.+.......|++-.|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999999999998764433 445777788888899999999999998877654 4677888999999999999999999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 452 ~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+.....+. ++..++...+..-.+.|+.+.+.++=..+....|.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99888774 89999999999999999999999988888666554
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=2.3e-05 Score=73.24 Aligned_cols=162 Identities=13% Similarity=0.025 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
.|..+...+...++.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344455555555666665555554443211 1121 122222334456677777777777766552 123333332 112
Q ss_pred HH----hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010057 146 LF----LNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG 220 (519)
Q Consensus 146 ~~----~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 220 (519)
+. ..+....+.+.+.. ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22 23444444444443 1112233 3344455566677777777777777777643 223456666777777777
Q ss_pred ChHHHHHHHHHHHH
Q 010057 221 ETRTIILILRYMKE 234 (519)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (519)
++++|...++....
T Consensus 163 ~~~eA~~~l~~~l~ 176 (355)
T cd05804 163 RFKEGIAFMESWRD 176 (355)
T ss_pred CHHHHHHHHHhhhh
Confidence 77777777776544
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.7e-05 Score=70.14 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010057 97 INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175 (519)
Q Consensus 97 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 175 (519)
++-|+.....+...+...|+.++|+..|++.... .|+ ........-.+.+.|+.+....+...+.... .-+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3345566667777777777777777777766544 222 2222222333456666666666666665431 12233333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.-....-...+++.|+.+-+..++.. +.+...|-.=..++...++++.|.-.|+....
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 33334445566677776666665532 11333444444556666777777766665544
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=8.3e-05 Score=71.20 Aligned_cols=358 Identities=11% Similarity=0.006 Sum_probs=220.8
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010057 125 EEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP 204 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 204 (519)
.++....+.-|...|..+--+....|+++.+-+.|++.... .--....|+.+-..|...|.-..|..+++.-....-.|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33444445557778888888888899999999999887754 33366788888889999999889999888776543224
Q ss_pred -CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHc------CCccCHHHHHHHHHHH-hhcCchhHHHhhhCCCCCcccccc
Q 010057 205 -DKAACNILIEKCCKA-GETRTIILILRYMKEN------RLALRYPVFKEALQTF-KVADENDSLLWQVHPQFSPEFISD 275 (519)
Q Consensus 205 -~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 275 (519)
|...+...-+.|.+. +..++++.+..+.... .+.|....+..+--.+ ......+..- ....
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR----------~~~h 460 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER----------DALH 460 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH----------HHHH
Confidence 333444444444433 6666666666555541 1122211111111111 1111111000 0001
Q ss_pred hhhhhhHH---hccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 276 NDAVEFVT---TDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 276 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
......++ .....++.+...+...|...+++..|.....+....+-.-+...|..+.-.+...+++.+|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 11111121 122344455566777888999999999999998888777788888888888888899999999888765
Q ss_pred hC-CC------------------CcCHHHHHHHHHHHHh---------c--------------CCcchHHHHHHHH----
Q 010057 353 KM-DL------------------NLERTAYLALIGILIK---------L--------------NTFPKVAEIVEEM---- 386 (519)
Q Consensus 353 ~~-~~------------------~~~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~---- 386 (519)
+. |. .-...|...++..+-. . .+..++....+.+
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 43 21 0001122222222220 0 1112222222211
Q ss_pred ----HhcC---------CCcc--------chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCH
Q 010057 387 ----TKAG---------HSLG--------VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSA 444 (519)
Q Consensus 387 ----~~~~---------~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 444 (519)
...| ..|. ...+......+.+.+..++|...+.+..... -.+..|......+...|++
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh
Confidence 1111 1222 2244556777888999999987777766543 3466788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHH--HHHHhcccCcc
Q 010057 445 DKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEI--YRKEKKSIQAD 495 (519)
Q Consensus 445 ~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~ 495 (519)
.+|.+.|...... .|+ .....++...+.+.|+..-|.. ++..+.+++|.
T Consensus 701 ~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 701 EEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 9999999988876 555 5678888899999999888888 99988888775
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=7.1e-08 Score=85.15 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=116.4
Q ss_pred HHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHh----
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLG---- 406 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 406 (519)
....+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ +..+...+..++.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHh
Confidence 334567788999998888642 456777788899999999999999999998753 2334444544433
Q ss_pred cCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh-hHHHH
Q 010057 407 SARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV-SDAEI 484 (519)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~-~~a~~ 484 (519)
-.+.+.+|..+|+++.+. ++++.+.+.+..++...|++++|.+++++..+.+ +-|+.|+..++.+....|+. +.+.+
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 334699999999998876 5678888999999999999999999999987764 44677888888888888888 66888
Q ss_pred HHHHhcccCcc
Q 010057 485 YRKEKKSIQAD 495 (519)
Q Consensus 485 ~~~~~~~~~~~ 495 (519)
++.+++...|+
T Consensus 258 ~l~qL~~~~p~ 268 (290)
T PF04733_consen 258 YLSQLKQSNPN 268 (290)
T ss_dssp HHHHCHHHTTT
T ss_pred HHHHHHHhCCC
Confidence 99988877664
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=2.5e-05 Score=82.83 Aligned_cols=378 Identities=10% Similarity=-0.039 Sum_probs=201.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINID-AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
+......+...|++.++...+...... +. ..............|+.+.+...++.+.......+..........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 444455566677777666544332211 00 01112222344456777777776666532111112222333444555
Q ss_pred hcCCHHHHHHHHHHHHHC--CC----CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQR--GL----PPNC--YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK----AACNILIEK 215 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~--g~----~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~ 215 (519)
..|+++++...+.+.... .. .+.. .....+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 677888888777766542 00 1111 11222334455678888888888776653111111 234555566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhH
Q 010057 216 CCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295 (519)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (519)
+...|+++.|...+++............. .. .....
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~-~~-------------------------------------------~~~~~ 536 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHY-AL-------------------------------------------WSLLQ 536 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHH-HH-------------------------------------------HHHHH
Confidence 67778888888887776652111000000 00 01122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHhccCChhhHHHHHHHHHhC--CCCc--CHHHHH
Q 010057 296 LVLILLKKKNLVAIDSLLSGIMDK----SIQ--L-DSAVISTIIEVNCDHRRRDGALLAFEYSVKM--DLNL--ERTAYL 364 (519)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~ 364 (519)
+...+...|++..|...+.+.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 344556677777777766654321 111 1 1223334445566678888888888776543 1112 123344
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCcc-chhH-----HHHHHHHhcCCCcchHHHHhhhCCcCCC-Cch----hHHH
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLG-VYLG-----ALLIHRLGSARRPVPAAKIFSLLPEDQK-CTA----TYTA 433 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~ 433 (519)
.+...+...|+.+.|.+.+.......-... ...+ ...+..+...|+.+.|.+.+.......+ ... .+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 456667778888888888877754211110 0000 1122334557788888888766544211 111 1345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccC
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRK----GIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 493 (519)
+..++...|++++|..++++.... |..++ ..++..+..++.+.|+.++|...+++..++.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666777888888888888877653 32222 2345556677788888888888888877654
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=6.4e-09 Score=58.00 Aligned_cols=31 Identities=35% Similarity=0.711 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010057 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 167 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 197 (519)
+.||..||++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=3.6e-05 Score=71.90 Aligned_cols=302 Identities=11% Similarity=-0.030 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC-YPTI-VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
..|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3555666666677778887776666554421 1222 112222334567889999999998888752 223334442 22
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhc
Q 010057 180 YLVR----AGKYEEALEIFSKMQEAGVQPDK-AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVA 254 (519)
Q Consensus 180 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (519)
.+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...++...+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD---------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------------
Confidence 2222 3444455554443 11223333 34445666778888899888888887764422
Q ss_pred CchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 010057 255 DENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEV 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (519)
+...+..+...
T Consensus 147 ---------------------------------------------------------------------~~~~~~~la~i 157 (355)
T cd05804 147 ---------------------------------------------------------------------DAWAVHAVAHV 157 (355)
T ss_pred ---------------------------------------------------------------------CcHHHHHHHHH
Confidence 12233444445
Q ss_pred HhccCChhhHHHHHHHHHhCCC-CcCH--HHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CccchhH-H--HHHHHHhc
Q 010057 335 NCDHRRRDGALLAFEYSVKMDL-NLER--TAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLGVYLG-A--LLIHRLGS 407 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~ 407 (519)
+...|++++|...++....... .|+. ..|..+...+...|++++|..+++....... .+..... + .++..+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 5556666666666665554321 1221 1234455566666666666666666543221 1111110 1 22333333
Q ss_pred CCCcchHHHH---hhhCCcCCCC-chhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CC-cccHHHHHHHH
Q 010057 408 ARRPVPAAKI---FSLLPEDQKC-TATY--TALIGVYFSAGSADKALKIYKTMCRKGIH-------PS-LGTFNVLLAGL 473 (519)
Q Consensus 408 ~g~~~~A~~~---~~~~~~~~~~-~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p~-~~t~~~l~~~~ 473 (519)
.|....+.+. ........+. ...+ .....++...|+.++|.++++.+...... +. ........-++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 3433333222 1111111011 1122 34666777888899999999888764322 11 11122222345
Q ss_pred HhcCChhHHHHHHHHhccc
Q 010057 474 EKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~ 492 (519)
...|++++|.+.+.....+
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7889999998888876654
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=7.5e-09 Score=57.75 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=17.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 131 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=0.00017 Score=69.68 Aligned_cols=409 Identities=14% Similarity=0.117 Sum_probs=206.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|-+++|..+|++-.+ |..|=+.|-..|.|++|.++-+.--+-.+ ..||..-..-+-..+|.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHH
Confidence 3666666666665421 33444555556667766666544332211 2355555555555666666666
Q ss_pred HHHHHHHCCC---------C----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 123 IWEEMKLKEC---------Y----------PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 123 ~~~~m~~~~~---------~----------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
.|++...... + .|...|.-...-+-..|+.+.|+.+|...++ |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 6654311100 0 0111111111112234444444444443332 2333444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhh
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQ 263 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 263 (519)
.|+.++|-++-++ .-|....-.|.+.|-..|++.+|..+|..... +..+|+.+...+-.|.+...
T Consensus 951 qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 4555555444332 12556666788888888999999888876543 55666666554443333221
Q ss_pred hCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH--------HHhc--CCCccHHHHHHHHH
Q 010057 264 VHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG--------IMDK--SIQLDSAVISTIIE 333 (519)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~li~ 333 (519)
.... .. ........+++....-....+..|-+.|.+.+|.++--+ +... ....|+...+-...
T Consensus 1016 al~s-~~------~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1016 ALMS-GG------SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred Hhhc-Cc------hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1111 00 000111122233333445566778888888888765422 1222 33446667777777
Q ss_pred HHhccCChhhHHHHHHHHHh----------CCC----------------CcCHH----HHHHHHHHHHhcCCcchHHHHH
Q 010057 334 VNCDHRRRDGALLAFEYSVK----------MDL----------------NLERT----AYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~----------~~~----------------~~~~~----~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
.++.+.++++|..++-..++ .|+ .|+.. ....+...|.++|.+..|-+-|
T Consensus 1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777777776654322 121 23322 3666777888888877665444
Q ss_pred HH----------HHhcC-----------------------------CCccchhHHHHHHHHhcCCC--------------
Q 010057 384 EE----------MTKAG-----------------------------HSLGVYLGALLIHRLGSARR-------------- 410 (519)
Q Consensus 384 ~~----------~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~-------------- 410 (519)
.+ +++.| ...++.+...++..|.+..-
T Consensus 1169 TQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi 1248 (1416)
T KOG3617|consen 1169 TQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI 1248 (1416)
T ss_pred hhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh
Confidence 33 22333 11334444444444444322
Q ss_pred --------------cchHHHHhhhCCcCCCCchhHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCCCc--
Q 010057 411 --------------PVPAAKIFSLLPEDQKCTATYTALIGVYFS-----------AGSADKALKIYKTMCRKGIHPSL-- 463 (519)
Q Consensus 411 --------------~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~g~~p~~-- 463 (519)
+++|.+.+.++..+......++.|-.-.+. ..+..+.++-...|.+.-.-||+
T Consensus 1249 Eiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir 1328 (1416)
T KOG3617|consen 1249 EIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIR 1328 (1416)
T ss_pred hHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcch
Confidence 223333333333221112222222211111 12444444444555555333433
Q ss_pred --ccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 464 --GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 464 --~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|..++..+....+|+.|-+.++++....|.
T Consensus 1329 ~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1329 CTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 46788889999999999999999999877665
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=6.1e-07 Score=79.28 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=63.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATD 157 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 157 (519)
-.|++..+..-.+ ........+.....-+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455555554443 222211112333444556666666555333 2322222 4444444444433333334444444
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 158 VYKEMIQRGLPPNCYTY-TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 158 ~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
-+++....+..++..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44433333222222222 22223444456666666665432 2445555566666666666666666666654
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.0002 Score=65.87 Aligned_cols=424 Identities=11% Similarity=0.190 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010057 30 KWDSYTVNQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSV 107 (519)
Q Consensus 30 ~p~~~~~~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 107 (519)
+-|..+|+.+|..+ ...+++.+.+++++. .++-....|..-|+.-...++++.++.+|.+-...- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45789999999866 578999999999974 346677889999999999999999999999987763 367777777
Q ss_pred HHHHHh-cCChhhH----HHHHHHH-HHCCCCCC-hhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC--
Q 010057 108 MHWLSN-AGDVDGA----VNIWEEM-KLKECYPT-IVSYTAYMKI---------LFLNDRVKEATDVYKEMIQRGLPP-- 169 (519)
Q Consensus 108 i~~~~~-~g~~~~a----~~~~~~m-~~~~~~p~-~~~~~~li~~---------~~~~~~~~~a~~~~~~m~~~g~~p-- 169 (519)
++---+ .|+...+ .+.|+-. .+.|+.+- ...|+..+.- |..+.+++...++|+++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764443 3343332 2233332 33354433 3345555542 445567777888888887642110
Q ss_pred ----CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHH--HHHHHHH--
Q 010057 170 ----NCYTYTVLMEYL-------VRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTI--ILILRYM-- 232 (519)
Q Consensus 170 ----~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a--~~~~~~~-- 232 (519)
|-..|..=|+-. -+...+..|.++++++... |+.....+ .-..|-.++. .+++...
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHH
Confidence 111111111111 1223455666666665432 32211111 0000001110 0111000
Q ss_pred --HHcCCccCH---------HHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHH
Q 010057 233 --KENRLALRY---------PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILL 301 (519)
Q Consensus 233 --~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (519)
+..++.... ..+...+..+.-.+ +++.. ...+.. ..-..+.
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p---eiWy~------------------~s~yl~-------~~s~l~~ 297 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP---EIWYD------------------YSMYLI-------EISDLLT 297 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH---HHHHH------------------HHHHHH-------HhhHHHH
Confidence 011111000 00111111111000 00000 000000 0000122
Q ss_pred hcCCH-------HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc---CChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHH
Q 010057 302 KKKNL-------VAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH---RRRDGALLAFEYSVKM-DLNLERTAYLALIGIL 370 (519)
Q Consensus 302 ~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 370 (519)
..|+. +++..+++.....-..-+..+|..+...--.. +..+..-+.+.++... ...|+ .+|...++..
T Consensus 298 ~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~i 376 (656)
T KOG1914|consen 298 EKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFI 376 (656)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHH
Confidence 22222 23333333332222222333333333211111 1244444555555443 22332 3466777777
Q ss_pred HhcCCcchHHHHHHHHHhcCCCc-cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHH
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSL-GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 448 (519)
.+..-+..|..+|..+.+.+..+ ++++.++++.-|| .++..-|.++|+.-... +.++.--...+..+...++-..|.
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R 455 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNAR 455 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHH
Confidence 77777777888888887766555 6667777777665 35667777777754433 233344456666667777777777
Q ss_pred HHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 449 KIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 449 ~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+|++....++.|| ...|..++.-=..-|+...+.++-++.-..-|
T Consensus 456 ~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 456 ALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 78888777766555 35677777666777777777777766655544
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=8e-05 Score=71.76 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=117.6
Q ss_pred CHHHHHHHHhcC-----CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------C
Q 010057 32 DSYTVNQVLKTH-----PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK-G--------I 97 (519)
Q Consensus 32 ~~~~~~~ll~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~ 97 (519)
|..|-.++|.-. |+.+.|.+-.+.+ .+...|..+.+.|.+..+++-|.-.+..|... | -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 677777777642 9999998777665 23567999999999999999888777776542 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
.|+ .+-..+.-.....|.+++|..+|.+-++. ..|=..|-..|.+++|+++-+.=..- . =..||..-
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHH
Confidence 121 22333334456778899999999887654 44556677789999998886543321 1 22455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQEA-------------------GVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~~-------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
...+-..++.+.|++.|+.-... .-..|...|.....-.-..|+.+.|+.+|...+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 66666677788877777643110 0122445555555555566777777777765544
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00022 Score=70.42 Aligned_cols=187 Identities=13% Similarity=0.170 Sum_probs=133.2
Q ss_pred hccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010057 12 LKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFEL 91 (519)
Q Consensus 12 ~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 91 (519)
...+-+++|..+|+... .+....+.++...+..++|.++-++.- .+..|+.+..+-.+.|...+|.+-|
T Consensus 1059 i~~~LyEEAF~ifkkf~--~n~~A~~VLie~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSy-- 1127 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD--MNVSAIQVLIENIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESY-- 1127 (1666)
T ss_pred hhhhHHHHHHHHHHHhc--ccHHHHHHHHHHhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHH--
Confidence 44566778888888764 356677777777788888888776552 2456888888888888888887766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 010057 92 MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC 171 (519)
Q Consensus 92 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 171 (519)
.+. -|+..|..+++...+.|.+++-.+.+.-.++..-.|.. =+.||-+|++.+++.+.++++ .-||.
T Consensus 1128 -ika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~ 1194 (1666)
T KOG0985|consen 1128 -IKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNV 1194 (1666)
T ss_pred -Hhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCc
Confidence 222 26778888888888888888888877766665444433 357788888888887766554 24677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 172 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.....+.+-|...+.++.|.-+|..+. -|.-|...+...|++..|.+.-++
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777888888888888877776443 366666677777777777665443
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=0.00011 Score=70.05 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=109.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCc
Q 010057 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTF 376 (519)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (519)
+......+.+.+|..+++.+.++.. -..-|..+...|+..|+++.|.++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3455566778888888887766543 3445778888999999999999988643 2356678889999999
Q ss_pred chHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 377 PKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
..|.++-.+.. |.......|-+-..-+-+.|++.+|++++-.+.. |+ ..|..|-+.|..+..+++.++-.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~--p~-----~aiqmydk~~~~ddmirlv~k~h- 877 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--PD-----KAIQMYDKHGLDDDMIRLVEKHH- 877 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC--ch-----HHHHHHHhhCcchHHHHHHHHhC-
Confidence 98877765553 3233445555555567888999999988877655 32 35677778888887777766421
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 457 KGIHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 457 ~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
| ..-..|...+..-+...|+.+.|+.-|
T Consensus 878 -~-d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 878 -G-DHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred -h-hhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 1 011234444444444444444444433
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.5e-06 Score=82.08 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=157.8
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
.+...+.+|+..|+..+|..+..+..+ -+|+...|..+....-...-+++|.++++..... .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 456678899999999999998888766 4788888988888877777788899888765432 1111111233
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 450 (519)
+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.+++..|.+.|.......|| ...||.+-.+|.+.|+..+|...
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 4688999999998887754 345667777777788999999999999988887665 67999999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 451 ~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
+++..+.+ .-+...|...+-...+.|.+++|.+.++++.++.-+...+
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 99999988 5667888888889999999999999999998887666633
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00016 Score=62.55 Aligned_cols=310 Identities=12% Similarity=0.064 Sum_probs=179.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM---EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI-LIE 214 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~ 214 (519)
.--+-..+...|++..|+..|....+- |+..|.++. ..|...|+...|+.=+..+.+ ..||-..-.. -..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 334445555666666666666666553 333333332 355566666666666666655 3455432111 123
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
.+.+.|.++.|..=|+.+.+..... .....+-..+ ...++.. ...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~--~~~~eaqskl---~~~~e~~------------------------------~l~ 159 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN--GLVLEAQSKL---ALIQEHW------------------------------VLV 159 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc--chhHHHHHHH---HhHHHHH------------------------------HHH
Confidence 4556677777777777666654321 1111111000 0000000 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQL-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
..+..+...||...+...+..+.. +.| +...+..-..+|...|.+..|+.=++...+.. .-+..++--+-..+...
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 234455667777777777777654 344 44455566677788888888887777766654 23444455556667777
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHH-------------HHHhcCCCcchHHHHhhhCCcCCCC-----chhHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLI-------------HRLGSARRPVPAAKIFSLLPEDQKC-----TATYTALI 435 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li 435 (519)
|+.+.++...++.++.+ |+....-... ......+++.++.+..+...+..|. ...+..+-
T Consensus 237 gd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 88888888888877754 4443221111 1123345555555555554444343 22344566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+|...+++.+|++.-.+..+. .|| ..++.-=..+|.-..+++.|+.-|++..+.+++.
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 6777788999999988888766 454 6777777788888888999999999888887753
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.2e-05 Score=67.88 Aligned_cols=81 Identities=12% Similarity=-0.027 Sum_probs=42.2
Q ss_pred HhcCCCcchHHHHhhhCCcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH
Q 010057 405 LGSARRPVPAAKIFSLLPED---QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~ 481 (519)
+.+.|+++.|.+.+..|+-. .-|++|...+.-.-. .+++-+..+-+.-+.... +-...||..++-.|++..-++-
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhH
Confidence 34556666666666666543 234555443322211 233444444444444442 2345566666667777666666
Q ss_pred HHHHHH
Q 010057 482 AEIYRK 487 (519)
Q Consensus 482 a~~~~~ 487 (519)
|-.++-
T Consensus 329 AADvLA 334 (459)
T KOG4340|consen 329 AADVLA 334 (459)
T ss_pred HHHHHh
Confidence 666554
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=5.6e-05 Score=71.86 Aligned_cols=367 Identities=16% Similarity=0.118 Sum_probs=196.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
..|.+|+.+++.+.. . ....--|..+...|+..|+++.|+++|.+. ..++-.|..|.+.|+++.|.++
T Consensus 746 kew~kai~ildniqd-q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQD-Q--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhh-h--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 578888888887742 2 222334677778888888888888887432 2355567788888888888877
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 203 (519)
-++.. |.......|-+-..-+-+.|++.+|+++|-... .|+. -|.+|-+.|..+..+++.+.-....
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~-- 880 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH-- 880 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhh--
Confidence 66543 334455566666666777888888888775443 2443 4567777777777777665442211
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHH
Q 010057 204 PDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVT 283 (519)
Q Consensus 204 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (519)
-..|-..+..-+-..|++..|+.-|-+..+ +......|...+-+++..+.
T Consensus 881 -l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri-------------------- 930 (1636)
T KOG3616|consen 881 -LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI-------------------- 930 (1636)
T ss_pred -hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH--------------------
Confidence 112444455556666777777666554332 11111122111111111110
Q ss_pred hccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHH
Q 010057 284 TDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY 363 (519)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (519)
....+.......+++...+.-.-+.|.++++.. | ....-+...|.++.++-|.++-+...+.. .|...
T Consensus 931 aktegg~n~~k~v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k-~~~vh-- 998 (1636)
T KOG3616|consen 931 AKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH-- 998 (1636)
T ss_pred HhccccccHHHHHHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--
Confidence 011122233344555555555555666666542 1 23344555677788888888777666543 22222
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHH-----HHHHHhcCC-CcchHHHHhhhCCc----------CCCC
Q 010057 364 LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL-----LIHRLGSAR-RPVPAAKIFSLLPE----------DQKC 427 (519)
Q Consensus 364 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g-~~~~A~~~~~~~~~----------~~~~ 427 (519)
..+..-+-..|++++|.+-|-+.++.+.- +. +|.. .=.-+.+.| ++++|.++|-.-.. ..|+
T Consensus 999 lk~a~~ledegk~edaskhyveaiklnty-ni-twcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~ 1076 (1636)
T KOG3616|consen 999 LKLAMFLEDEGKFEDASKHYVEAIKLNTY-NI-TWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED 1076 (1636)
T ss_pred hHHhhhhhhccchhhhhHhhHHHhhcccc-cc-hhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh
Confidence 22333456778888888888777765421 10 1100 001122333 45555555421110 1111
Q ss_pred --chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 010057 428 --TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 428 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
+..|..-.++-...|++.+|..++-+. -+|| ..++-|...+.|..|.++.+.
T Consensus 1077 ~l~dv~tgqar~aiee~d~~kae~fllra----nkp~-----i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1077 LLADVLTGQARGAIEEGDFLKAEGFLLRA----NKPD-----IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred hhHHHHhhhhhccccccchhhhhhheeec----CCCc-----hHHHHHHHhccChHHHHHHHh
Confidence 122333333334456666665554322 2454 344566677777777777653
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00016 Score=76.86 Aligned_cols=338 Identities=9% Similarity=-0.040 Sum_probs=165.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--C----CCCh--hhHHHHHHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE--C----YPTI--VSYTAYMKILF 147 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~----~p~~--~~~~~li~~~~ 147 (519)
....|++..+...++.+.......+..........+...|+++++...+......- . .|.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666665554321111122222333444455667777766666554320 0 0111 11122223345
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEALEIFSKMQEA----GV-QPDKAACNILIEKCCK 218 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~ 218 (519)
..|++++|...+++....--..+. ...+.+...+...|++++|...+.+.... |- .+...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 667777777777666542111111 23344555566677777777776665432 11 1112244445556666
Q ss_pred cCChHHHHHHHHHHHHcCCc---cCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhH
Q 010057 219 AGETRTIILILRYMKENRLA---LRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295 (519)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (519)
.|+++.|...+++.....-. +...... .....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------------------------------~~~~~ 578 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHE---------------------------------------------FLLRI 578 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHH---------------------------------------------HHHHH
Confidence 77777777776665441000 0000000 00111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCc--cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cCHHHH-----HH
Q 010057 296 LVLILLKKKNLVAIDSLLSGIMDK--SIQL--DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LERTAY-----LA 365 (519)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~ 365 (519)
+...+...|+++.|...+...... ...+ ....+..+...+...|++++|.+.+......... .....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 222344456666666655554321 1111 1223334455566677888887777766442100 000101 11
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCccc---hhHHHHHHHHhcCCCcchHHHHhhhCCcC----CC---CchhHHHHH
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLGV---YLGALLIHRLGSARRPVPAAKIFSLLPED----QK---CTATYTALI 435 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~~li 435 (519)
.+..+...|+.+.|.+.+............ .....+..++...|+.++|...++..... +. ...+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 123344567777777776655432111110 11234556677778888888877765432 11 123556667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 010057 436 GVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
.++.+.|+.++|...+.+..+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888899999999888887764
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=6.5e-05 Score=76.52 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK-ECYPT---IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYT 175 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 175 (519)
+...|-..|..+...++.++|.+++++.... +++-. ...|.++++.-...|.-+...++|++..+. --.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4457777788888888888888888877654 11111 235777777777777777888888887774 11234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.+..+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 7888888888888888888888765 2245567888888888888888888888877663
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1e-05 Score=74.66 Aligned_cols=259 Identities=15% Similarity=0.107 Sum_probs=167.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 224 (519)
+.+.|++.+|.-.|+.....+ +-+...|-.|.......++-..|+..+.++.+. .| +.....+|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 456788888888888877763 225667888888888888888888888888774 34 44577777777877787778
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|...++......++-..... .+...
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~---------a~~~~---------------------------------------------- 396 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVS---------AGENE---------------------------------------------- 396 (579)
T ss_pred HHHHHHHHHHhCccchhccc---------cCccc----------------------------------------------
Confidence 88877766554322000000 00000
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCcchHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVK-MDLNLERTAYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
+.+ ..+-.++.. ......++|-.+.. .+..+|+.....|.-.|--.|++++|...|
T Consensus 397 ~~~----------~~~s~~~~~-------------~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 397 DFE----------NTKSFLDSS-------------HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred ccc----------CCcCCCCHH-------------HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 000 000011111 22233344444433 344567777777777788888888888888
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHH---CC-
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCR---KG- 458 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g- 458 (519)
+.++... +.|..+||-|...++...+.++|+..+++..+..|+ +.++-.|.-+|...|.+++|.+.|=..+. .+
T Consensus 454 ~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 454 EAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 8888765 457778888888888888888888888888887776 45666777889999999999998876543 21
Q ss_pred -----CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 459 -----IHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 459 -----~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
-.++...|.+|=.++.-.+..|.+.+..
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 1123346666666666666666555444
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=4.9e-06 Score=72.48 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKG--IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+...|.+.|++++|+..+++..+.. -+.....+..+..++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45667888999999999999998772 112346788999999999999999999988765443
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.0008 Score=62.06 Aligned_cols=404 Identities=14% Similarity=0.037 Sum_probs=225.6
Q ss_pred HhhhccCChhHHHHHHHhC-CCCCCHH-HHHHHHhcC---CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCCh
Q 010057 9 YKILKYSTWDSAQDLLKNL-PIKWDSY-TVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHD-RFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~-~~~p~~~-~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 82 (519)
-..+..|++++|+..|.+. .+.|+.. .|+.-..++ |++++|++=-..- ..+.|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccH
Confidence 3456789999999999987 6666533 333333322 7888777644433 334665 45688888888889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHHC---CCCCChhhHHHHHHHHHh--------
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG---AVNIWEEMKLK---ECYPTIVSYTAYMKILFL-------- 148 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~---~~~p~~~~~~~li~~~~~-------- 148 (519)
++|..-|.+-.+.... |...++-+..++........ --.++..+... ........|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999988887432 56677778777721110000 00111111100 000011223333322211
Q ss_pred --cCCHHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHH
Q 010057 149 --NDRVKEATDVYKE-----MIQRG-------LPP------------N----------CYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 149 --~~~~~~a~~~~~~-----m~~~g-------~~p------------~----------~~~~~~li~~~~~~~~~~~a~~ 192 (519)
..+...+...+.. +...| ..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111111111110 00001 111 0 1123456667777778888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 193 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
-+....+.. -+..-++..-.+|...|.+..+...-....+.|.... ..+..+-.++.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r------------------- 303 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALAR------------------- 303 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHH-------------------
Confidence 888877753 3555556666778888888777776666555443211 111111111111
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
+-..+.+.++++.+...+.+.......|+.. .+....++++.......
T Consensus 304 -----------------------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 304 -----------------------LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA 351 (539)
T ss_pred -----------------------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH
Confidence 2224555677777777777755444443321 12223344444443332
Q ss_pred hCCCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chh
Q 010057 353 KMDLNLERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TAT 430 (519)
Q Consensus 353 ~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 430 (519)
-. .|.... ...-...+.+.|++..|...|.++++.. +.|...|....-+|.+.|.+..|.+=-+...+..|+ ...
T Consensus 352 ~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 352 YI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 22 232221 2222566778899999999999988876 678888888888999999988888777666665443 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
|.-=..++.-..+|++|++.|.+..+.+ |+..-+.--+.-|..
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 5555556666678889999998888773 554444444444433
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.51 E-value=0.00054 Score=59.42 Aligned_cols=186 Identities=9% Similarity=0.074 Sum_probs=119.0
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCh
Q 010057 42 THPPMEKAWLFFNWVSRSRGFNHDRFTYTTM---LDIFGEAKRISSMKYVFELMQEKGINIDAV-TYTSVMHWLSNAGDV 117 (519)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~ 117 (519)
+.|++..|+.-|...+ .-|+..|.++ ...|...|+...|..=+....+. +||-. ....--..+.+.|.+
T Consensus 50 a~~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HhhhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccH
Confidence 4478888888888775 3333334433 45677788888888888887775 55532 222223466788889
Q ss_pred hhHHHHHHHHHHCCCCCC--hhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 118 DGAVNIWEEMKLKECYPT--IVSY------------TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~--~~~~------------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
+.|..=|+........-+ ...+ ...+..+...|+...|......+++- .+-|...|..=..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHh
Confidence 999888888877632110 1111 12334455677888888888877774 24466777777778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.|++..|+.=++...+..- -+..++--+-..+...|+.+.++..+++..+.+
T Consensus 202 ~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred cCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 8888887766666655322 244455555666777788888777777766644
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=3.1e-05 Score=67.40 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCh--hhH
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGIN-I-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTI--VSY 139 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 139 (519)
.....+-.+...+...|+++.|...|+.+.+.... | ....+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556666777777788888888888877765321 1 1235666777777888888888888887765221111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHH
Q 010057 140 TAYMKILFLN--------DRVKEATDVYKEMIQRGLPPNCY-TY-----------------TVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 140 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~~~~~~~a~~~ 193 (519)
..+..++... |+.++|.+.|+.+... .|+.. .+ ..+...|.+.|++++|...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4444444443 6677788888887765 23321 11 1345667888999999999
Q ss_pred HHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 194 FSKMQEAGV-QP-DKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 194 ~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
++...+... .| ....+..+..++...|++++|..+++.+...
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999887521 12 3568889999999999999999998887664
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=6.2e-05 Score=76.66 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-CccchhHHHHHHH
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLGVYLGALLIHR 404 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 404 (519)
..|..|...|.+.+..++|-++|+.|.+.= .-....|...+..+.+..+-+.|..++.+.++.=- .-......-.+..
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 456777788888888999999999888752 24567788889999999999999999999887531 1234455556666
Q ss_pred HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhH
Q 010057 405 LGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~ 481 (519)
-.+.|+.+++..+|+..... |.....|+.+|..-.++|+.+.+..+|++.++.++.|- ...|...+.-=...|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 77899999999999876654 45678999999999999999999999999999987765 3456666654455666554
Q ss_pred HHHHHHH
Q 010057 482 AEIYRKE 488 (519)
Q Consensus 482 a~~~~~~ 488 (519)
++..-.+
T Consensus 1690 vE~VKar 1696 (1710)
T KOG1070|consen 1690 VEYVKAR 1696 (1710)
T ss_pred HHHHHHH
Confidence 4443333
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.5e-05 Score=66.57 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=106.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCc
Q 010057 297 VLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTF 376 (519)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (519)
+..|...|++..+..-.+.+.. |. ..+...++.++++..++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467778887776433322211 10 01223556677777777777665 55677788888888889999
Q ss_pred chHHHHHHHHHhcCCCccchhHHHHHHH-HhcCCC--cchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 377 PKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARR--PVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
++|...|+...+.. +.+...+..+..+ +...|+ .++|.+++++..+..| ++..+..+...+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998888865 4466666777765 356666 4788888887777644 56778888888888888888888888
Q ss_pred HHHHCCCCCCcccH
Q 010057 453 TMCRKGIHPSLGTF 466 (519)
Q Consensus 453 ~m~~~g~~p~~~t~ 466 (519)
++.+.. +|+....
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 888774 5554443
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.002 Score=64.15 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=135.6
Q ss_pred hhHHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010057 6 SNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSM 85 (519)
Q Consensus 6 ~~i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 85 (519)
..+..++..|++++++-...+.|..|+...+..-+.. ..++++.++...+.+..+...| ++.+...+...+....+
T Consensus 486 KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~d---ie~I~DlFme~N~iQq~ 561 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEEPLAD---IEQIVDLFMELNLIQQC 561 (1666)
T ss_pred HHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCCCccc---HHHHHHHHHHHHhhhhh
Confidence 3455677788888888888888999997776555444 4678888888777654432223 23333333322222222
Q ss_pred HHHHHHH-------------------HhC-----------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 010057 86 KYVFELM-------------------QEK-----------GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT 135 (519)
Q Consensus 86 ~~~~~~m-------------------~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 135 (519)
-..+-.. ... +.- +..-+..+.+.|.+.|-..+|++-+.++... + -
T Consensus 562 TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--K-R 637 (1666)
T KOG0985|consen 562 TSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-R 637 (1666)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--H-H
Confidence 2222111 111 111 1222566788899999999999888776532 1 1
Q ss_pred hhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------
Q 010057 136 IVSYTA-----YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA---------- 200 (519)
Q Consensus 136 ~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------- 200 (519)
....+. -+-.|...-.++.+.+.+..|...++..|..+...+..-|...=-.+..+++|+..+.-
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSi 717 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSI 717 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHH
Confidence 111111 12345556678889999999998888888887777777676666666667777665432
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 201 -GVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 201 -g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
++.-|..+.--.|.+.++.|++.+++++.++
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 2445666666778888999988877777654
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=8.9e-05 Score=68.69 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=145.8
Q ss_pred CCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010057 30 KWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMH 109 (519)
Q Consensus 30 ~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 109 (519)
.|+++.-...+-.-|++..|.-.|+..+++. +-+...|..|....+..++-..|+..+.+..+.... |....-.|.-
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAV 361 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAV 361 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 4667776666666788999999999887654 557788999998888888888899888888887443 5677777888
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 010057 110 WLSNAGDVDGAVNIWEEMKLKECY--------PTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-RGLPPNCYTYTVLMEY 180 (519)
Q Consensus 110 ~~~~~g~~~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~ 180 (519)
.|...|.-..|..+++.-.....+ ++...-+. ..+.....+....++|-++.. .+..+|+.....|.-.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 888888888888888876543210 01110000 222333344555666666554 4445788888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 181 LVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
|--.|++++|.+.|+..... .| |..+||-|.-.++...+.++|+..|.+.++..
T Consensus 440 y~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred HhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 88899999999999988874 45 55689999999998899999999999887744
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00011 Score=61.40 Aligned_cols=175 Identities=16% Similarity=0.093 Sum_probs=127.4
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 010057 311 SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 390 (519)
++.+.+.......+......-...|+..+++++|++..+... +......=+..+.+..+++-|.+.++.|.+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444444444444444556889999999999887621 33334444556778889999999999998753
Q ss_pred CCccchhHHHHHHHH----hcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 010057 391 HSLGVYLGALLIHRL----GSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGT 465 (519)
Q Consensus 391 ~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 465 (519)
+..+.+-|..++ .-.+.+.+|.-+|+++.++ +|++.+.+....++...|++++|..++++...+. .-++.|
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 445555555554 4456699999999999985 7888999999999999999999999999999885 456788
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHhcccCcc
Q 010057 466 FNVLLAGLEKLGRVSDA-EIYRKEKKSIQAD 495 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~ 495 (519)
+..++..-...|+..++ .+.+.+++...|.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 88888777777876554 6677777666654
No 114
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=0.00016 Score=64.97 Aligned_cols=203 Identities=10% Similarity=0.046 Sum_probs=145.7
Q ss_pred hhccCChhHHHHHHHhC-CCCCCHHHH-H---HHHhcCC-ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh--
Q 010057 11 ILKYSTWDSAQDLLKNL-PIKWDSYTV-N---QVLKTHP-PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI-- 82 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~-~~~p~~~~~-~---~ll~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-- 82 (519)
+...++.++|+.+.+++ ...|+.++. + .++...+ ++++++..++.+.+.. +.+..+|+..-..+.+.++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhh
Confidence 33456889999999987 556665542 2 2444556 6789999999887543 55667788776666666653
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CC----HHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN---DR----VKEA 155 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~----~~~a 155 (519)
+++...++.+.+.... |..+|+....++...|+++++++.++++.+.+.. |..+|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 6778888888887655 7889999988999999999999999999887654 677787766665554 22 2466
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRA----GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
++...+++... +-|...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+..
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 77776776653 33667888888877763 34466888888876643 23666888888888864
No 115
>PLN02789 farnesyltranstransferase
Probab=98.44 E-value=0.00026 Score=63.72 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=27.5
Q ss_pred CCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 425 QKCTATYTALIGVYFSA----GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
+.|..+|+-+...+... ++..+|.+.+.+....+ +.++..+..+++.|+.
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34556666666666552 23345666666655432 3345566666666654
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=4.9e-07 Score=51.50 Aligned_cols=35 Identities=37% Similarity=0.703 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=0.00018 Score=60.03 Aligned_cols=164 Identities=15% Similarity=0.021 Sum_probs=133.3
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHH
Q 010057 63 NH-DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTA 141 (519)
Q Consensus 63 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 141 (519)
.| |... ..+-..+...|+-+....+........ .-|....+..+....+.|++..|...|.+..... ++|..+|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 44 4444 666677777888888877776654432 2366677779999999999999999999998764 668999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+--+|.+.|+.++|..-|.+..+.- .-+...+|.|.-.+.-.|+.+.|..++......+. -|..+-..+.......|+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCC
Confidence 9999999999999999999998852 23567888888899999999999999999887643 377788888899999999
Q ss_pred hHHHHHHHHH
Q 010057 222 TRTIILILRY 231 (519)
Q Consensus 222 ~~~a~~~~~~ 231 (519)
++.|.++...
T Consensus 218 ~~~A~~i~~~ 227 (257)
T COG5010 218 FREAEDIAVQ 227 (257)
T ss_pred hHHHHhhccc
Confidence 9999988664
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00063 Score=62.72 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHH-------HH
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLA-------LI 367 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 367 (519)
.+.....+..++..+..-+....... -+..-++..-.+|...|.+.+....-....+.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 45555666666666666666555443 34445556666777777776666666555555421 1122332 33
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCccchhHH-------------------------HHHHHHhcCCCcchHHHHhhhCC
Q 010057 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA-------------------------LLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
.++.+.++++.+...|.......-.|+...-. .-...+.+.|++..|.+.+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35555667777777777765433233221110 11233455667777777776665
Q ss_pred cC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 423 ED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 423 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.. +.|...|....-+|.+.|.+..|++=.+.-++.. ++....|.-=..++....+|++|.+.|++..+.+|
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 54 3356677777777777777777777666666552 22223333333344555567777777776666654
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=5.7e-05 Score=63.06 Aligned_cols=115 Identities=7% Similarity=0.090 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hhhHHH
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW-LSNAGD--VDGAVN 122 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~ 122 (519)
.++++..++...+.. +.|...|..+...|...|+++.|...|+...+.... +...+..+..+ +...|+ .++|.+
T Consensus 55 ~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 55 PEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 344444444433222 334444555555555555555555555544444322 34444444443 233343 245555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
++++..+.... +..++..+...+.+.|++++|...++++.+
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554444221 334444444444455555555555555444
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=0.00035 Score=70.45 Aligned_cols=240 Identities=10% Similarity=0.069 Sum_probs=149.6
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhH
Q 010057 62 FNH-DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY 139 (519)
Q Consensus 62 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 139 (519)
+.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+.+..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 344 4567888888888888888888888866665 3332 2333333355555554433333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 140 TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
.++.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|+..
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 3444444555555555555556553 2345578888889999999999999999998875 33677888888888888
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHH
Q 010057 220 GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLI 299 (519)
Q Consensus 220 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (519)
++++|.+++......
T Consensus 164 -dL~KA~~m~~KAV~~---------------------------------------------------------------- 178 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------------------------------------------------------- 178 (906)
T ss_pred -hHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 999999888876552
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCcch
Q 010057 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM-DLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
+...+++..+..++..+.... ..+.+.-..+.+.+... +..--..++-.+-..|...+++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~-----------------~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYN-----------------SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcC-----------------cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 223344555555555554322 12333334444444433 323333445566666777778888
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHh
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLG 406 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (519)
+..+++.+++.. +.|.....-++.+|.
T Consensus 242 ~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 888888887765 335555555565554
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=2.7e-06 Score=66.96 Aligned_cols=95 Identities=14% Similarity=-0.053 Sum_probs=55.9
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~ 479 (519)
+...+...|++++|...|+...... .+...|..+..++.+.|++++|+..|++..+.+ +.+...+..+..++...|+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 4444555555555555555544432 345566666666666666666666666666553 33455666666666666666
Q ss_pred hHHHHHHHHhcccCccc
Q 010057 480 SDAEIYRKEKKSIQADA 496 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~~ 496 (519)
++|...+++..++.|+.
T Consensus 109 ~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 109 GLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66666666666665543
No 122
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=9.7e-07 Score=49.79 Aligned_cols=33 Identities=36% Similarity=0.679 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00068 Score=68.47 Aligned_cols=167 Identities=8% Similarity=-0.008 Sum_probs=117.6
Q ss_pred HHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010057 33 SYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDR-FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVM 108 (519)
Q Consensus 33 ~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 108 (519)
...+..++..+ +++++|.++.+..... .|+. ..|-.+.-.+.+.++.+.+..+ .++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 45566776655 8999999999976544 3433 2233333356666665544444 334
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
.......++..+..+...|...+ -+...+..+..+|-+.|+.++|.+.++++++.. +-|..+.|.+.-.|+.. +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 44444455544555555555442 245588889999999999999999999999976 44788899999999988 999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 189 EALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 189 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
+|.+++...... +....++..+..++.++....+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc
Confidence 999998877653 66777888888888888775543
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00024 Score=67.83 Aligned_cols=86 Identities=6% Similarity=0.082 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQL-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
...+.++++.+...|...... .| +...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.++
T Consensus 528 ~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHH
Confidence 344455555555555544332 22 23445555555555555555555555555554 223334444444555555555
Q ss_pred hHHHHHHHHH
Q 010057 378 KVAEIVEEMT 387 (519)
Q Consensus 378 ~a~~~~~~~~ 387 (519)
+|.+.+..+.
T Consensus 605 da~~A~~rll 614 (777)
T KOG1128|consen 605 DAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.3e-06 Score=49.75 Aligned_cols=33 Identities=36% Similarity=0.731 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1.7e-06 Score=48.80 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 169 (519)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=7.1e-05 Score=62.42 Aligned_cols=156 Identities=13% Similarity=-0.000 Sum_probs=122.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 329 STIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
..+-..+...|+-+....+........ +-+.......+....+.|++..|...+.+..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566677777777777766654322 3344456667888888999999999999988765 68888999999999999
Q ss_pred CCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 409 RRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
|++++|..-|.+..+.. .++..+|.|...|.-.|+.+.|..++......+ .-|...-..+..+....|++++|+.+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988877763 457788888888888999999999999988874 3366677777788889999999988875
No 128
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.23 E-value=2.1e-05 Score=56.18 Aligned_cols=67 Identities=19% Similarity=0.402 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKEC-YPTIVSYTAYMKILFLND--------RVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..||+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 344444444444333321 2233445555555555555555555555544
No 129
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.23 E-value=2.1e-05 Score=56.22 Aligned_cols=80 Identities=10% Similarity=0.215 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHCCCCCChhhH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDAVTYTSVMHWLSNAG--------DVDGAVNIWEEMKLKECYPTIVSY 139 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~ 139 (519)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556677777999999999999999999 999999999999888753 244677899999999999999999
Q ss_pred HHHHHHHHh
Q 010057 140 TAYMKILFL 148 (519)
Q Consensus 140 ~~li~~~~~ 148 (519)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.22 E-value=0.00015 Score=57.12 Aligned_cols=92 Identities=13% Similarity=-0.024 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 33444444555555555555544432 1134444455555555555555555555555432 224444444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 010057 186 KYEEALEIFSKMQE 199 (519)
Q Consensus 186 ~~~~a~~~~~~m~~ 199 (519)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
No 131
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.22 E-value=0.0041 Score=56.39 Aligned_cols=438 Identities=11% Similarity=0.068 Sum_probs=211.6
Q ss_pred HhhhccCChhHHHHHHHhC--CCCCCHHHH------HHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 9 YKILKYSTWDSAQDLLKNL--PIKWDSYTV------NQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~--~~~p~~~~~------~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
..+-+.++.++|.++|-+. ...-+++.+ +.+|.++ .+.+.-........+..|-.+-...+..+. +.+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHH
Confidence 3456778999999999988 333232332 3445554 667766666666655444333333333332 347
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCChhhHH
Q 010057 79 AKRISSMKYVFELMQEK--GINI------------DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYPTIVSYT 140 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~ 140 (519)
.+.+.+|.+.+..-.++ +-.| |...=+..+..+...|++.++..+++++... ...-+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899998888776654 3222 1222245677888999999999999998765 2335788888
Q ss_pred HHHHHHHhc--------CC-------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 010057 141 AYMKILFLN--------DR-------VKEATDVYKEMIQR------GLPPNCYTYTVLMEYLVRAG--KYEEALEIFSKM 197 (519)
Q Consensus 141 ~li~~~~~~--------~~-------~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m 197 (519)
.++-.+.+. .. ++.+.-...+|... .+.|....+..++....-.. ...--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755554442 11 22333333333321 23444444555544433221 222233333333
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC----HHHHHHHHHHHhhcCchhHHHh------hhCC
Q 010057 198 QEAGVQPDKA-ACNILIEKCCKAGETRTIILILRYMKENRLALR----YPVFKEALQTFKVADENDSLLW------QVHP 266 (519)
Q Consensus 198 ~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~------~~~~ 266 (519)
.+.-+.|+.. +...|+..+.+ +.+++..+-+.+....+.+- ..++...+....+..+...... .+.+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3344445433 23333333333 34444433333332222111 1222333322222222221110 0000
Q ss_pred CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH---HHhccC-Chh
Q 010057 267 QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIE---VNCDHR-RRD 342 (519)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~-~~~ 342 (519)
...-+... --...........+.. .+.+ ...-..++......++... .....++. -+=+.| .-+
T Consensus 330 ~~svs~Kl-lls~~~lq~Iv~~DD~-------~~Tk---lr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 330 RISVSEKL-LLSPKVLQDIVCEDDE-------SYTK---LRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred cchhhhhh-hcCHHHHHHHHhcchH-------HHHH---HHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccH
Confidence 00000000 0000000000000000 1111 1222233333333322211 11111121 122233 477
Q ss_pred hHHHHHHHHHhCCCCcCHHHHH----HHHHHHHhc---CCcchHHHHHHHHHhcCCCcc----chhHHHHHHH--HhcCC
Q 010057 343 GALLAFEYSVKMDLNLERTAYL----ALIGILIKL---NTFPKVAEIVEEMTKAGHSLG----VYLGALLIHR--LGSAR 409 (519)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g 409 (519)
+|+++++...+-. +-|..+-+ .+=.+|... ..+.+...+-+-+.+.|++|. ....|.|.++ +...|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8888888877642 22333322 222333322 344555556666667787663 3455666555 55677
Q ss_pred CcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 010057 410 RPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 468 (519)
++.++.-.-..+.+-.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 477 ey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred cHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 77777766655555567788888888888888888888888865 3666666553
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=6.9e-05 Score=74.46 Aligned_cols=140 Identities=7% Similarity=-0.043 Sum_probs=87.9
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHH
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALI 435 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li 435 (519)
..+...+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|....++.....|+ ......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3445566666666677777777777777776653 223334455566666777777777777666555443 44556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
.++.+.|++++|+.+|++....+ +-+..++..+..++...|+.++|...|++..+...++.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 66666777777777777776632 233566666666677777777777777776666555543
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=4.8e-05 Score=70.04 Aligned_cols=124 Identities=14% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 96 GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK--ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
+...+......+++.+....+++.+..++-+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456777777888888888888888888888765 2323345667999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888777667777777777777665
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.20 E-value=0.0041 Score=61.92 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.+..+|.+.|+....-. ..+...+......|+...+++.|..+.-..-+... ..-..-|...--.|.+.++...|+.
T Consensus 506 ~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence 45667777777664222 33556677788888888888888777433222110 0011223333344556666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM--EYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~m 197 (519)
-|+...+..+. |...|..+..+|...|++..|.++|.+.... .|+. +|...- -.-+..|.+.+++..+..+
T Consensus 584 ~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 584 EFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666555322 5666667777777777777777777665542 3332 222211 1223445555555555544
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=1.1e-05 Score=63.19 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 010057 399 ALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477 (519)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g 477 (519)
..+...+...|+.++|.+.|+.+... +.+...|..+..+|...|++++|...+++..+.+ +.+...+..+...+...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 33444444555555555555544332 2245556666666666666666666666665553 334555555556666666
Q ss_pred ChhHHHHHHHHhcccCcc
Q 010057 478 RVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 478 ~~~~a~~~~~~~~~~~~~ 495 (519)
++++|...+++..++.|+
T Consensus 100 ~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 100 EPESALKALDLAIEICGE 117 (135)
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 666666666666665553
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.0082 Score=59.18 Aligned_cols=229 Identities=10% Similarity=0.096 Sum_probs=153.6
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHh-cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLK-THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
+.-|...+..+++..|++...++ |..|-..++.++.. ..|+.++|..+++... ..+ ..|..|...+-..|...
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~-~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY-GLK-GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCC-CCchHHHHHHHHHHHHH
Confidence 45577788889999999888877 33333444444433 4499999999988763 222 33888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND--------- 150 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------- 150 (519)
++.++|..+|+..... .|+......+..+|.|.+.+.+-.++=-+|-+. .+-+...+=.+++.+...-
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999999876 577888888888999988876654444444332 2224555555665554421
Q ss_pred -CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010057 151 -RVKEATDVYKEMIQRG-LPPNCYTYTVLMEYLVRAGKYEEALEIFS-KMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 151 -~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 227 (519)
-..-|.+.++.+.+.+ ---+..=...-...+...|++++|.+++. ...+.-..-+...-+--+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234666777777654 11122112222334456788999999994 34443333344455566788888899999999
Q ss_pred HHHHHHHcCCc
Q 010057 228 ILRYMKENRLA 238 (519)
Q Consensus 228 ~~~~~~~~~~~ 238 (519)
+-.++...+..
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 98888887754
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00019 Score=65.99 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++..... +-+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566777778899999999999999883 44 55568888888999999999999998752 34677777778889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKA-ACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+.++++.|+++.+++.+. .|+.. +|..|..+|.+.|+++.|+..+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999884 56555 999999999999999999988886653
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00088 Score=66.83 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..++..+-.|.....+.|++++|..+++...+.... +......+...+.+.+++++|....++....... +....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 666888888888999999999999999999887332 4567778888999999999999999998887432 45667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
..++.+.|++++|..+|++....+ +-+..++..+...+.+.|+.++|...|+...+. ..|....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 888889999999999999998742 234778888888999999999999999988765 23344444443
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0012 Score=55.42 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----N 149 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 149 (519)
..|...+++++|.+...... +......=+..+.+..+.+-|...++.|.... +..|.+.|..+|.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34455555555555544311 22333333344445555555555555555442 34444444444443 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 010057 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET-RTIILI 228 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~ 228 (519)
+...+|.-+|++|-+. ..|+..+.+-...++...|++++|..++++....... ++.+...+|-+-...|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3455555556555543 4555555555555555566666666666555544222 334444444333333332 333344
Q ss_pred HHHHHH
Q 010057 229 LRYMKE 234 (519)
Q Consensus 229 ~~~~~~ 234 (519)
+.+++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00012 Score=57.99 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=57.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCCCCc--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc--hhHHHHHH
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNL--ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV--YLGALLIH 403 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 403 (519)
|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+........++. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 3556666666666666543111 1122333445566667777777777776665411111 11222333
Q ss_pred HHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 404 RLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
.+...|++++|...++........+..+......|.+.|++++|...|+
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444444444433322233344444444444444444444444
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00055 Score=62.44 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 448 (519)
+...|+++.|+..+..+++.- +.|+.......+.+.+.++.++|.+.++++....|+ ...+-.+..+|.+.|++.+|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 344566666666666665542 345555555566666666666666666666655454 455556666666666666666
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
.+++...... +-|+..|..|..+|...|+..+|.....+.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666665552 445666666666666666666555554443
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00019 Score=65.91 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
......+++.+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++..... +-+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456677778888899999999999999884 44 45568888888899999999999988662 2356666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNC-YTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+.+.++.+.|+++.+++.+. .|+. .+|..|..+|...|+++.|+..++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999999999999985 5654 5999999999999999999999988764
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=5.8e-06 Score=45.36 Aligned_cols=31 Identities=35% Similarity=0.687 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGI 459 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 459 (519)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988874
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=5.5e-05 Score=69.69 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhh
Q 010057 61 GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK--GINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS 138 (519)
Q Consensus 61 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 138 (519)
+.+.+......++..+....+.+.+..++-..... ....-..|.+++|+.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34567778888899988888999999999888765 2323345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999887777888887777766665
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00032 Score=54.87 Aligned_cols=94 Identities=9% Similarity=0.039 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
...+...+...|++++|.+.|+.+.+.+. .+...+..+...+...|++++|...+++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 33444444445555555555555444322 134444444455555555555555555444332 1233444444444455
Q ss_pred cCCHHHHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQ 164 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~ 164 (519)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.001 Score=60.79 Aligned_cols=178 Identities=10% Similarity=-0.010 Sum_probs=122.3
Q ss_pred CChhHHHHHHHhC-----CCCCCHHHHHHHHhcC--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010057 15 STWDSAQDLLKNL-----PIKWDSYTVNQVLKTH--PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKY 87 (519)
Q Consensus 15 ~~~~~a~~~~~~~-----~~~p~~~~~~~ll~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 87 (519)
.++.++...-+++ .-.|+...+...+... +........+..+.... .-...-|..-+.. ...|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~-~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQT-YLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHH-HHhcccchHHH
Confidence 3455566666666 2334555555555422 12222222222222221 1223335444444 46789999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 88 VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166 (519)
Q Consensus 88 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 166 (519)
.++.+.+.-. -|+.-+......+.+.|+.++|.+.++.+... .|+ ...+-.+..++.+.|++.+|..+++.....
T Consensus 328 ~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~- 403 (484)
T COG4783 328 LLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN- 403 (484)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Confidence 9999988632 25555566678999999999999999999877 566 556677888999999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 167 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+-|+..|..|..+|...|+..++.....+...
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 355889999999999999999999888877765
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00083 Score=53.16 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPN--CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
..+...|++++|...|+........|+ ......|...+...|++++|+..++...... .....+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 334444455555555544444321111 1122233444444455555555444322211 122233344444555555
Q ss_pred hHHHHHHHH
Q 010057 222 TRTIILILR 230 (519)
Q Consensus 222 ~~~a~~~~~ 230 (519)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.3e-05 Score=43.90 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 165 (519)
+|+.+|++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.95 E-value=0.028 Score=56.33 Aligned_cols=420 Identities=14% Similarity=0.092 Sum_probs=240.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHD-RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.+...|+..|-+..+. .|+ ...|..|...|+...+...|.+.|+..-+..-. +...+......|++..+++.|..
T Consensus 472 K~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHH
Confidence 5677777776655432 343 457999999999888999999999998876433 67788899999999999999999
Q ss_pred HHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 123 IWEEMKLKEC-YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 123 ~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
+.-...+... ..-...|...--.|.+.++...|..-|+...... +-|...|..+..+|.+.|.+..|.++|.....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-- 624 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-- 624 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence 9444333211 1112233334445778999999999999988753 23777999999999999999999999998876
Q ss_pred CCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCC-------ccCHHH-------------------HHHHHHHHh-
Q 010057 202 VQPDKAACNILIE--KCCKAGETRTIILILRYMKENRL-------ALRYPV-------------------FKEALQTFK- 252 (519)
Q Consensus 202 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~-------------------~~~~l~~~~- 252 (519)
+.|+. +|.-.-. .-+..|.+.++...+..+..... ..-... +...+..+.
T Consensus 625 LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 625 LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45543 3333222 23456778777777766544210 000011 111111110
Q ss_pred ---hcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHh----cCCHHHHHHHH----HHHHhcCC
Q 010057 253 ---VADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK----KKNLVAIDSLL----SGIMDKSI 321 (519)
Q Consensus 253 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~----~~~~~~~~ 321 (519)
.....+...|.+.+... ..+ .... +..+...++..+.+ .+...+-.-++ ........
T Consensus 704 ~l~h~~~~~~~~Wi~asdac----------~~f-~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl 771 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDAC----------YIF-SQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL 771 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHH----------HHH-HHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH
Confidence 00011111221111100 000 0011 11222222222222 11110000000 00001111
Q ss_pred CccHHHHHHHHHHHhc----cC----ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCc
Q 010057 322 QLDSAVISTIIEVNCD----HR----RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (519)
..+..+|..+...|.+ .+ +...|+..+....+.. .-+..+|+.|.-. ...|++.-+..-|-.-.... +.
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~ 848 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PT 848 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-cc
Confidence 1122233333322222 11 3346777777766543 2355666666544 55577776666655554433 34
Q ss_pred cchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCcccHHH
Q 010057 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCR----KGIHPSLGTFNV 468 (519)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~ 468 (519)
...+|..+.-.+....+++-|...|.......| |...|-.....-...|+.-++..+|..--+ .|--|+..-|-+
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 556666676678888999999999999988754 567787666666778888888888877322 233455555555
Q ss_pred HHHHHHhcCChhHHHHHH
Q 010057 469 LLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 469 l~~~~~~~g~~~~a~~~~ 486 (519)
........|+.++-..-.
T Consensus 929 ~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HHHHHHhccchHHHHHHh
Confidence 555556666655544433
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0022 Score=53.47 Aligned_cols=172 Identities=13% Similarity=0.054 Sum_probs=119.2
Q ss_pred CCccHHH-HHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 321 IQLDSAV-ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 321 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
..++..+ |-.++-+....|+.+-|...++.+...- +-+...-..-..-+-..|++++|.++++.+++.+ +.|..++.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence 4455443 4456666677888888999888887653 2122221111223455688999999999998877 56677776
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG- 477 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g- 477 (519)
--+...-..|+..+|++-+....+. ..|...|.-+...|...|++++|.-.++++.-.. |.++..+..+...+.-.|
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh
Confidence 6666677777777887777665554 4678899999999999999999999999988662 334555556666654444
Q ss_pred --ChhHHHHHHHHhcccCcc
Q 010057 478 --RVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 478 --~~~~a~~~~~~~~~~~~~ 495 (519)
+.+-|.++|++..++.|.
T Consensus 204 ~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHHHHhChH
Confidence 456688889888888773
No 151
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.86 E-value=0.00044 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 34456666666666666666666666666655544
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00014 Score=55.53 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGI--HPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+..+..++.+.|++++|++.|+.+....- +.....+..+..++.+.|++++|...++++.+..|
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 344455556666666666666666554410 01123344555555666666666666666555544
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00011 Score=53.28 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~ 478 (519)
.+...+...|++++|...++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 344455556666666666665544322 33566777777888888888888888877763 3344567777778888888
Q ss_pred hhHHHHHHHHhcccCc
Q 010057 479 VSDAEIYRKEKKSIQA 494 (519)
Q Consensus 479 ~~~a~~~~~~~~~~~~ 494 (519)
+++|...+++..+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 8888888887766554
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.016 Score=48.57 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=133.3
Q ss_pred CChHHHHHHHHHHhh--cCC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 010057 44 PPMEKAWLFFNWVSR--SRG-FNHDRFT-YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG 119 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~--~~~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 119 (519)
.+.++..+++..+.. ..| ..++..+ |..++-+....++.+.|...++.+...- +-+..+-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 466777777776652 223 4566554 6666667778899999999999988763 2233332222334455788999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
|+++++.+.+.. +.|..++--=+...-..|+.-+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998875 346777777676777788888888888888875 566899999999999999999999999999887
Q ss_pred cCCCCCHH-HHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 010057 200 AGVQPDKA-ACNILIEKCCKAG---ETRTIILILRYMKENRL 237 (519)
Q Consensus 200 ~g~~p~~~-~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~ 237 (519)
. .|... .+..+...+.-.| +.+.+.++|....+...
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 3 45444 4444555444443 45677788887776544
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.78 E-value=0.00069 Score=55.26 Aligned_cols=116 Identities=15% Similarity=0.270 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010057 100 DAVTYTSVMHWLSNA-----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTY 174 (519)
Q Consensus 100 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 174 (519)
+..+|..++..|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 556666666665532 4455555555566666666666666666655443 2211 0111111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET-RTIILILRYMKE 234 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 234 (519)
. --.+-+-|++++++|...|+.||..|+..+++.+++.+.. .+..++.-.|.+
T Consensus 114 -----h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 114 -----H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -----c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1 1124577999999999999999999999999999887763 334444444443
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.0073 Score=53.95 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc-CChhhHHHHHHHHHhC----CCCcC--HHHHHHHHHHHH
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH-RRRDGALLAFEYSVKM----DLNLE--RTAYLALIGILI 371 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 371 (519)
.|...|+...+-..+..+ ...|-.. |++++|++.|++..+. + .+. ..++..+...+.
T Consensus 103 ~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 344555555555444443 3456666 7888888888876653 2 221 233666777788
Q ss_pred hcCCcchHHHHHHHHHhcC
Q 010057 372 KLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~ 390 (519)
+.|++++|.++|++.....
T Consensus 167 ~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHHHh
Confidence 8888888888888877643
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=9.5e-05 Score=49.81 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHhcccCc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG-RVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 494 (519)
...|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...| ++++|.+.+++..+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678899999999999999999999999884 445778888888999999 79999999999988776
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0026 Score=48.36 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECY--PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP--PNCYTYTVLM 178 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li 178 (519)
++..+...+.+.|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444444555555555555555555443110 01223444555555555555555555555542100 1123444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 010057 179 EYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0022 Score=56.99 Aligned_cols=129 Identities=15% Similarity=0.223 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW-LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 146 (519)
+|..+++...+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|..+|+...+. ...+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666654321 122333333222 12234444566666665544 233455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 147 FLNDRVKEATDVYKEMIQRGLPPNC---YTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+.++.+.|..+|+..... +.++. ..|...++.=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666544 22222 2555566655566666666666655554
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.58 E-value=0.0022 Score=46.12 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+...+...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555555444431 1122344444444445555555555555444432 1122344444445555555
Q ss_pred hHHHHHHHHHH
Q 010057 222 TRTIILILRYM 232 (519)
Q Consensus 222 ~~~a~~~~~~~ 232 (519)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=4.4e-05 Score=53.79 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=36.5
Q ss_pred CCcchHHHHhhhCCcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 010057 409 RRPVPAAKIFSLLPEDQK---CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~ 485 (519)
|+++.|+.+++++.+..| +...+-.+..+|.+.|++++|++++++ .+.+ +.+......+..+|.+.|++++|.+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444433322 223344456666666666666666655 2221 11123333344555666666666666
Q ss_pred HHH
Q 010057 486 RKE 488 (519)
Q Consensus 486 ~~~ 488 (519)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00011 Score=51.81 Aligned_cols=81 Identities=11% Similarity=0.050 Sum_probs=44.7
Q ss_pred cCCcchHHHHHHHHHhcCC-CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGH-SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
.|+++.|+.+++.+.+... .++...+-.+..+|.+.|++++|..+++.....+.+....-.+..+|.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555666666666655432 113333333566666666666666666652111222334445577788888888888887
Q ss_pred HH
Q 010057 452 KT 453 (519)
Q Consensus 452 ~~ 453 (519)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00025 Score=47.00 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+...+.+.|++++|++.|++..+.. +-+...+..+..++...|++++|..+++++.+..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4456777788888888888877764 234666667777777788888888888777766664
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0095 Score=48.75 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID--AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM 143 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 143 (519)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34566666677777888888888877776433222 35677777777778888888887777766521 1345555666
Q ss_pred HHHHhcCCHHHHH
Q 010057 144 KILFLNDRVKEAT 156 (519)
Q Consensus 144 ~~~~~~~~~~~a~ 156 (519)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666644433
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.0022 Score=57.29 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=104.4
Q ss_pred HHHHhccCChhhHHHHHHHHHhCCC---CcC--HHHHHHHHHHHHhcCCcchHHHHHHHHHh----cCCC-ccchhHHHH
Q 010057 332 IEVNCDHRRRDGALLAFEYSVKMDL---NLE--RTAYLALIGILIKLNTFPKVAEIVEEMTK----AGHS-LGVYLGALL 401 (519)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l 401 (519)
...|-..+++++|.+.|.+..+... .+. ...|......|.+. ++++|.+.+....+ .|-. .-...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556666666666665533211 111 11244444444333 66677766666543 3311 113345556
Q ss_pred HHHHhcC-CCcchHHHHhhhCCcC---CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----Ccc-cHH
Q 010057 402 IHRLGSA-RRPVPAAKIFSLLPED---QKC----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-----SLG-TFN 467 (519)
Q Consensus 402 ~~~~~~~-g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~ 467 (519)
...|... |++++|.+.|++..+. ..+ ..++..+...+.+.|++++|+++|++....-... +.. .+-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 6677777 8888888888765432 111 3456778888899999999999999887653221 111 122
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhhhccCC
Q 010057 468 VLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDLLYGGD 516 (519)
Q Consensus 468 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 516 (519)
..+-++...|+...|.+.+++..+..|.........+..-|......||
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 2333556778999999999999888887766655555555544444444
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.052 Score=47.04 Aligned_cols=155 Identities=11% Similarity=0.078 Sum_probs=88.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTY---TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL---- 148 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 148 (519)
+.+.|++++|.+.|+.+...-..+ .... -.+..++.+.+++++|...|++..+.-..-....|...+.+.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 345666666666666666543221 1221 23445556666666666666666655221112233333333221
Q ss_pred -------------cCC---HHHHHHHHHHHHHCCCCCCHHH------------------HHHHHHHHHHcCCHHHHHHHH
Q 010057 149 -------------NDR---VKEATDVYKEMIQRGLPPNCYT------------------YTVLMEYLVRAGKYEEALEIF 194 (519)
Q Consensus 149 -------------~~~---~~~a~~~~~~m~~~g~~p~~~~------------------~~~li~~~~~~~~~~~a~~~~ 194 (519)
..| ..+|.+.|+++++. -|++.- --.+.+.|.+.|.+..|..-+
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 011 23444555555543 233211 113455688889999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 195 SKMQEA--GVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 195 ~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
+.+.+. +.+........++.+|...|..+.|......+.
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 998875 444455577788899999999999988776554
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0051 Score=54.71 Aligned_cols=131 Identities=15% Similarity=0.323 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI-LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
.+|..+|+..-+.+..+.|..+|.+.++.+ ..+...|-..... |...++.+.|.++|+...+. +..+...|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998653 2234444444444 33367778899999999876 56678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 181 LVRAGKYEEALEIFSKMQEAGVQPDK---AACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
+.+.++.+.|..+|+..... +.++. ..|...++-=.+.|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999865 33322 48999999999999999999999888774
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.48 E-value=0.00084 Score=52.19 Aligned_cols=88 Identities=15% Similarity=-0.033 Sum_probs=57.1
Q ss_pred HhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 010057 405 LGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~ 483 (519)
+...|++++|.++|+.+....| +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|+.+.|+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 4455666666666665544333 34556666667777777777777777777665 345666667777777777777777
Q ss_pred HHHHHhcccC
Q 010057 484 IYRKEKKSIQ 493 (519)
Q Consensus 484 ~~~~~~~~~~ 493 (519)
+.|+..++..
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 7777666654
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0035 Score=60.59 Aligned_cols=138 Identities=14% Similarity=0.022 Sum_probs=88.7
Q ss_pred CCCcCHHHHHHHHHHHHhcC-----CcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC--------CcchHHHHhhhC
Q 010057 355 DLNLERTAYLALIGILIKLN-----TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR--------RPVPAAKIFSLL 421 (519)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 421 (519)
..+.+...|...+++..... +...|..+|++..+.. +-....+..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34556666777777654432 2556777777777754 222334443333332211 122333333332
Q ss_pred Cc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 422 PE---DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 422 ~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.. .+.++..|..+...+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 22 23345677777777777899999999999988884 67788888888899999999999999988877664
No 170
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.044 Score=46.19 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH----
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI---- 402 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 402 (519)
+.+.+++.+...|.+.-.+..+.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666677788888888888887767788888899999999999999999999887643344444444433
Q ss_pred -HHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 010057 403 -HRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469 (519)
Q Consensus 403 -~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 469 (519)
..|.-.+++.+|.+.+++++..+ .|+...|.=.-+..-.|+..+|++..+.|... .|.+.+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33666788999999999888764 45555555555555578999999999999987 5666555543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0069 Score=49.35 Aligned_cols=95 Identities=19% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYP--TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
...|..+...+...|++++|...|++.......| ...+|..+...+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455556666666677777777777665442221 12356666667777777777777777666541 22233444444
Q ss_pred HHHH-------HcCCHHHHHHHHHH
Q 010057 179 EYLV-------RAGKYEEALEIFSK 196 (519)
Q Consensus 179 ~~~~-------~~~~~~~a~~~~~~ 196 (519)
..+. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 55565555444443
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.38 E-value=0.002 Score=59.55 Aligned_cols=101 Identities=10% Similarity=-0.068 Sum_probs=57.9
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 448 (519)
+...|+++.|++.|..+++.. +.+...+..+..+|...|++++|...++++....| +...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 334455555555555555443 23344444555555555555555555555544433 3556777777777778888888
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
..|++.++. .|+...+...+..|
T Consensus 91 ~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHH
Confidence 887777765 45554444444333
No 173
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.35 E-value=0.12 Score=47.35 Aligned_cols=420 Identities=9% Similarity=0.126 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.|..+|-.||..+...+..++..+++++|..- ++.=...|..-|++=....++..+..+|.+...... +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 667888999999999999999999999999863 233345788788877778899999999999887744 45566666
Q ss_pred HHHHHhcCCH------HHHHHHHHHHHH-CCCCCCHH-HHHHHH---HHHHHcCC------HHHHHHHHHHHHHcCCCC-
Q 010057 143 MKILFLNDRV------KEATDVYKEMIQ-RGLPPNCY-TYTVLM---EYLVRAGK------YEEALEIFSKMQEAGVQP- 204 (519)
Q Consensus 143 i~~~~~~~~~------~~a~~~~~~m~~-~g~~p~~~-~~~~li---~~~~~~~~------~~~a~~~~~~m~~~g~~p- 204 (519)
+.---+.+.. ....+.|+-... .++.|-.. .|+..+ ...-..|. ++.....|.++...-+.-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 5544333211 112233333332 45666544 333333 22223333 445555666665531110
Q ss_pred -----CHHHHHHHHH-HHHh--cCC----hHHHHHHHHHHHH--cCCccCHHHHHHHHHHHhhcCchhH------HHhhh
Q 010057 205 -----DKAACNILIE-KCCK--AGE----TRTIILILRYMKE--NRLALRYPVFKEALQTFKVADENDS------LLWQV 264 (519)
Q Consensus 205 -----~~~~~~~li~-~~~~--~g~----~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~ 264 (519)
|-..|..=++ +-++ .|+ +-.|...++++.. .|...-.++.. +.+.+..+... +-|+.
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~---Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL---RTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh---hhhccccccccchhhhHhhHhh
Confidence 1111111111 1111 121 3345555555443 23322111111 00111111000 00110
Q ss_pred CCCCCcc-cccchhh---hhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC
Q 010057 265 HPQFSPE-FISDNDA---VEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR 340 (519)
Q Consensus 265 ~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (519)
.-..... ....... +.-...+......++..-...+...+|-+.|......-.. ..|.... -+-..|.-.++
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~spsL~~--~lse~yel~nd 348 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPSLTM--FLSEYYELVND 348 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCchhe--eHHHHHhhccc
Confidence 0000000 0000000 1111111112222222222333344444444444332111 1111000 01111111112
Q ss_pred hhhHHHHHHHHHh--------------CCC---------------CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC-
Q 010057 341 RDGALLAFEYSVK--------------MDL---------------NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG- 390 (519)
Q Consensus 341 ~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 390 (519)
-+.....|+.... .+. .--...|...++...+..-++.|..+|..+.+.|
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 2222222211100 000 0111346667777777788889999999999888
Q ss_pred CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHH
Q 010057 391 HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATY-TALIGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFN 467 (519)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~ 467 (519)
..++++++++++.-++ .|+..-|.++|+.-...-||...| +..+..+...++-..|..+|+...+. +..+ ...|.
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~ 506 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYD 506 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHH
Confidence 5678888888888765 577888888988655544554444 56677777788888888888865544 2222 45677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 468 VLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 468 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.++.-=..-|+...+..+-+.+.++-|
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 777666777777666555555544433
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.31 E-value=0.22 Score=49.73 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=127.7
Q ss_pred HHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhc----CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh
Q 010057 8 VYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKT----HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 82 (519)
...+.|.|+.++|..+++.. +.+++...-...+.. .++.++|..+|+...+. -|+......+..+|.+.+++
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHH
Confidence 34578999999999999988 444443333333333 38999999999988643 67788888888999999888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCC
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD----------VDGAVNIWEEMKLKE-CYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~ 151 (519)
.+-.+.--+|-+. ++-+...+=++++....... ..-|.+.++.+.+.+ -.-+..-.......+...|+
T Consensus 127 k~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 127 KKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence 7766555555443 22234444455555544321 234666777776653 22223333444455667889
Q ss_pred HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 152 VKEATDVY-KEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 152 ~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
+++|++++ ....+.-..-+...-+.-+..+...++|.+..++-.++...|
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 99999999 444444344455666677888899999999999999998875
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0018 Score=55.41 Aligned_cols=127 Identities=11% Similarity=0.014 Sum_probs=83.9
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+..+ +.....|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888888764 3455667777888888888888888777777654 3455677778888888888888
Q ss_pred HHHHhhhCCcCCCCchhHH-HHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC
Q 010057 414 AAKIFSLLPEDQKCTATYT-ALIGVYFSAGSAD---KALKIYKTMCRKGIHPS 462 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~ 462 (519)
|++.|++..+..|+-.+|- .|-.+=-+.+... .+...++.....|..||
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 8888888777766555543 3333333333333 33444444444454444
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0076 Score=49.11 Aligned_cols=115 Identities=7% Similarity=-0.068 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINI--DAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
..+...+..+.+..+-......|..+...+...|++++|...|+........+ ...+|..+...+...|+.++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444443333333345667788888888999999999999987653322 2357888889999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 010057 125 EEMKLKECYPTIVSYTAYMKILF-------LNDRVKEATDVYKEM 162 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~-------~~~~~~~a~~~~~~m 162 (519)
++..... +....+++.+...+. ..|+++.|...+++.
T Consensus 96 ~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9987652 223455666666666 677777666555543
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.013 Score=54.25 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
..+...|+++.|++.|++..+.... +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3344556666666666666654321 44555566666666666666666666666542 224455666666666666666
Q ss_pred HHHHHHHHHHH
Q 010057 189 EALEIFSKMQE 199 (519)
Q Consensus 189 ~a~~~~~~m~~ 199 (519)
+|...|+...+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.26 E-value=0.0094 Score=46.51 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=44.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE 154 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 154 (519)
.+...|++++|.++|+.+...... +..-|-.|-.++-..|++++|+..|.......+ -|..++-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 334455555555555555554322 333444444455555555555555555554432 244455555555555555555
Q ss_pred HHHHHHHHHH
Q 010057 155 ATDVYKEMIQ 164 (519)
Q Consensus 155 a~~~~~~m~~ 164 (519)
|.+.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.044 Score=47.50 Aligned_cols=152 Identities=7% Similarity=0.048 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTY---TTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN--A---- 114 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~---- 114 (519)
|++++|++.|+.+.... +-+...- -.+..++.+.++++.|...+++..+....-...-|...+.+.+. .
T Consensus 46 g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 46 GNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 89999999999987543 2222322 34567788899999999999999876433223334444444331 1
Q ss_pred -----------CC---hhhHHHHHHHHHHCCCCCChhh------H------------HHHHHHHHhcCCHHHHHHHHHHH
Q 010057 115 -----------GD---VDGAVNIWEEMKLKECYPTIVS------Y------------TAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 115 -----------g~---~~~a~~~~~~m~~~~~~p~~~~------~------------~~li~~~~~~~~~~~a~~~~~~m 162 (519)
.| ...|...|+++.+. -|++.- . -.+.+-|.+.|.+..|..-++.+
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v 201 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQM 201 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 12 23566777777665 333321 1 12234588899999999999999
Q ss_pred HHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 163 IQR--GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 163 ~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+. +.+........++.+|...|..++|.++...+..
T Consensus 202 ~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 202 LRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 985 3333455677888999999999999988776543
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.024 Score=46.36 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777888888999999999998876533322 3577888888899999999999998888752 22455666677
Q ss_pred HHHHHcCCH
Q 010057 179 EYLVRAGKY 187 (519)
Q Consensus 179 ~~~~~~~~~ 187 (519)
..+...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 777776664
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.22 Score=48.28 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCC--------CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQE-KGINI--------DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
.|.+..|..+.......-.++-|+..|-+... .|++. +...-.+=+. +--|++++|.++|-+|.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchh---
Confidence 67788888888777777777777777654433 12210 0011111111 2247788888888777655
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL--PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 211 (519)
...|..+.+.|++-.+.++++.--. +. ..-...|+.+...++....|++|.+.|...... ..
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3345666777777776666543111 00 011346777777777777788887777654321 23
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 010057 212 LIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~ 232 (519)
.+.++.+..++++.+.+.+.+
T Consensus 828 ~~ecly~le~f~~LE~la~~L 848 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL 848 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc
Confidence 455555555555555444433
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.00096 Score=57.06 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=86.1
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHH
Q 010057 369 ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 447 (519)
-+.+.+++.+|+..|...++.. +.|+..|..-..+|.+.|.++.|++--+......|. ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4677899999999999999875 567778888899999999999999988887776554 56899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 448 LKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 448 ~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
++.|++.++. .|+..+|..=+...
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 9999998866 78888877666544
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.20 E-value=0.058 Score=42.98 Aligned_cols=126 Identities=12% Similarity=0.029 Sum_probs=91.3
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC---CchhHH
Q 010057 356 LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK---CTATYT 432 (519)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 432 (519)
.-|+...--.|..+..+.|+..+|...|.+...--+..|..+.-.+.++....+++..|...++.+.+.+| .+.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45666666677788888888888888888887766667777777777887888888888888887766533 244556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~ 483 (519)
.+...|...|++.+|..-|+..... -|++..-.....-+.+.|..++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 6777788888888888888888876 566665555555566677655543
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.031 Score=54.24 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
+...|..+.-.+...|++++|...+++.... .|+...|..+...+...|+.++|.+.+++....+..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4455666655555667777777777777664 356667777777777777777777777766655443
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.29 Score=47.92 Aligned_cols=115 Identities=6% Similarity=-0.014 Sum_probs=80.2
Q ss_pred CccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHH
Q 010057 322 QLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL 401 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (519)
.....+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++.+++-+.... +.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhH
Confidence 3344445555556666788888877766654 57777777778888888888876655544431 3345557
Q ss_pred HHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 402 IHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 453 (519)
+.+|.+.|+.++|.+.+.+.... .-...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh-------HHHHHHHHHhccHHHHHHHHHH
Confidence 78888889999998888777653 2577788888888888776543
No 186
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.13 E-value=0.022 Score=54.72 Aligned_cols=178 Identities=15% Similarity=0.081 Sum_probs=121.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCC-CCcCH-----HHHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCccchh
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMD-LNLER-----TAYLALIGILIK----LNTFPKVAEIVEEMTKAGHSLGVYL 397 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (519)
+..+++...-.|+-+.+++.+....+.+ +.-.. ..|..++..+.. ..+.+.|.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 4556666667788888888888776643 22111 124444444443 356678899999998763 55555
Q ss_pred HHH-HHHHHhcCCCcchHHHHhhhCCcCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 010057 398 GAL-LIHRLGSARRPVPAAKIFSLLPEDQ-----KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471 (519)
Q Consensus 398 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 471 (519)
+.. -.+.+...|++++|.+.|+...... -....+--+...+.-.++|++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 433 3455778899999999999765431 224566778888999999999999999999874 456666766666
Q ss_pred HH-HhcCCh-------hHHHHHHHHhcccCcccccccccchHHHHh
Q 010057 472 GL-EKLGRV-------SDAEIYRKEKKSIQADALSKDAVPMEEKIC 509 (519)
Q Consensus 472 ~~-~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~ 509 (519)
+| ...|+. ++|.++++++..+...... ...+++.|+.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g-k~lp~E~Fv~ 392 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG-KSLPLEKFVI 392 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc-CCCChHHHHH
Confidence 55 778888 8899999888776654333 3344455544
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0018 Score=43.26 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
+..+..+|.+.|++++|..+++++
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 188
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.12 E-value=0.24 Score=46.53 Aligned_cols=420 Identities=11% Similarity=0.078 Sum_probs=198.1
Q ss_pred hhhccCChhHHHHHHHhC-CCCCC-HHHHHHHHhc---CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-CCh-
Q 010057 10 KILKYSTWDSAQDLLKNL-PIKWD-SYTVNQVLKT---HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA-KRI- 82 (519)
Q Consensus 10 ~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~ll~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~- 82 (519)
..+....+++++..++++ +.-|+ +..|..-|.. ..+++....+|.+... . ..+...|..-|..-.+. ++.
T Consensus 28 re~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv-k--vLnlDLW~lYl~YVR~~~~~~~ 104 (656)
T KOG1914|consen 28 REAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV-K--VLNLDLWKLYLSYVRETKGKLF 104 (656)
T ss_pred HHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H--HhhHhHHHHHHHHHHHHccCcc
Confidence 344555889999999998 44444 4555555543 3788888889987753 2 45677777777655432 222
Q ss_pred ---hHHHHHHHHH-HhCCCCCC-HHHHHHHHH---------HHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH------
Q 010057 83 ---SSMKYVFELM-QEKGINID-AVTYTSVMH---------WLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY------ 142 (519)
Q Consensus 83 ---~~a~~~~~~m-~~~~~~~~-~~~~~~li~---------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------ 142 (519)
+...+.|+-. .+.|+.+- ...|+..+. -+..+.+.+...++++++..--+.-=...|+-.
T Consensus 105 ~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~ 184 (656)
T KOG1914|consen 105 GYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQE 184 (656)
T ss_pred hHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Confidence 2334444443 34454332 234555443 345566788888888888654221111222211
Q ss_pred HHH-------HHhcCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHHHcC------C--HHHH
Q 010057 143 MKI-------LFLNDRVKEATDVYKEMIQ--RGLPPNCY---------------TYTVLMEYLVRAG------K--YEEA 190 (519)
Q Consensus 143 i~~-------~~~~~~~~~a~~~~~~m~~--~g~~p~~~---------------~~~~li~~~~~~~------~--~~~a 190 (519)
|+- --+...+..|.++++++.. +|+..+.. .|-.+|..=-..+ . -...
T Consensus 185 IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv 264 (656)
T KOG1914|consen 185 INIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRV 264 (656)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHH
Confidence 111 1134456677777777654 34322211 2444443222111 0 1122
Q ss_pred HHHHHHHH-HcCCCCCHHHH-HHHH----HHHHhcCC-------hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCch
Q 010057 191 LEIFSKMQ-EAGVQPDKAAC-NILI----EKCCKAGE-------TRTIILILRYMKENRLALRYPVFKEALQTFKVADEN 257 (519)
Q Consensus 191 ~~~~~~m~-~~g~~p~~~~~-~~li----~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (519)
.-++++.. -.+..|+.... ...+ +.+...|+ .+++..+++.....-..-+...+ .++..+.....
T Consensus 265 ~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly-~~~a~~eE~~~- 342 (656)
T KOG1914|consen 265 MYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY-FALADYEESRY- 342 (656)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHhc-
Confidence 22333332 22444443311 1111 12222232 34566666654443222111111 11111100000
Q ss_pred hHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Q 010057 258 DSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD 337 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (519)
..+..+.....++++......--..+|...++.--+
T Consensus 343 --------------------------------------------~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR 378 (656)
T KOG1914|consen 343 --------------------------------------------DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR 378 (656)
T ss_pred --------------------------------------------ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH
Confidence 000122222333333222111222334444444444
Q ss_pred cCChhhHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 338 HRRRDGALLAFEYSVKMDLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
..-+..|..+|.++++.+..+ ....+++++.-+| .++...|.++|+.=++. +..++.-....++.+...++-..|..
T Consensus 379 ~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 379 AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHH
Confidence 455555556666665555444 3333444444333 34555555665554432 12333333445555555566666666
Q ss_pred HhhhCCcC--CC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcccHHHHHHHHHhcCChh
Q 010057 417 IFSLLPED--QK--CTATYTALIGVYFSAGSADKALKIYKTMCRK---GIHPSLGTFNVLLAGLEKLGRVS 480 (519)
Q Consensus 417 ~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~l~~~~~~~g~~~ 480 (519)
+|++.... ++ ....|..++.--..-|+...++++-+++... ...|...+-..+++-|.-.+.+.
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 66655443 22 2456777777777778888888877776544 12233344455566665555443
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0016 Score=44.29 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 436 GVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|.+.+++++|+++++++.+.+ +.++..+......+.+.|++++|.+.+++..+..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45777888888888888888773 445666666777778888888888888888777664
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.00099 Score=44.59 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.|++++|+++|+++.... +-+...+..+..+|.+.|++++|.++++++....|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45677888888888877662 335566666777778888888888888777666554
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.18 Score=48.32 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=55.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCC
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVY---------KEMIQRGLPPNCYTYTVLMEYLVRAGKY--EEALEIFSKMQEAGV 202 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~ 202 (519)
|....+.+-+..|...|.+++|.++- +.+-.. ..+...+++-=.+|.+..+. -+.+.-++++++.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44555666666777788887776541 111111 12333455555666666553 344445566777787
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 203 QPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 203 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.|+.... ...|+-.|.+.+|-++|.+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 7876543 3456777888888888764
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0011 Score=43.82 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+...+...|++++|.+.|+.+.+..| +...|..+..++.+.|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777888888888887776644 5778888999999999999999999998876
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.0035 Score=54.71 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
|...+....+.|++++|...|+.+++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~ 172 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK 172 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555554445556666666666666654
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.016 Score=45.85 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
...++..+...|+++.|..+...+.....- +...|..+|.+|...|+...|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444555555555555555544221 4445555555555555555555555544
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.029 Score=48.55 Aligned_cols=112 Identities=10% Similarity=-0.031 Sum_probs=79.3
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC---CcchHHHHhhhCCcCCC-CchhHH
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR---RPVPAAKIFSLLPEDQK-CTATYT 432 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~ 432 (519)
+-|...|..|...|...|+.+.|..-|....+.. ++++..+..+..++.... ...++..+|+++...+| |+.+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4566778888888888888888888888888753 355566666666543322 25678888887776544 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA 471 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 471 (519)
.|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 77888888888888888888888773 44444444443
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.27 Score=44.50 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 227 (519)
|.-+...|+...|.++-.+.. .|+..-|-.-+++++..++|++..+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~ 229 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEK 229 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344444444444444433331 1344445555555555555544444
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.95 E-value=0.094 Score=39.38 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMI 163 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~ 163 (519)
.+...|++++|+.++++..
T Consensus 47 tlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444333
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.037 Score=43.84 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAA 208 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 208 (519)
...++..+...|++++|.++.+.+.... +.|...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555556677777777777666642 33556667777777777777777777766532 366666554
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.086 Score=44.44 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=29.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+...|.+.|.+..|..-++.+.+. +..........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 456677778888888888777765 1111223455667777777776644
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.89 E-value=0.1 Score=39.23 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPN--CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD----KAACNILIEK 215 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 215 (519)
+..++-..|+.++|..+|++....|...+ ...+-.+.+.+...|++++|..+++...... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44567788999999999999999887655 3466778889999999999999999988652 33 2222333446
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 010057 216 CCKAGETRTIILILRYMKENRLALRYPVFKEALQTFK 252 (519)
Q Consensus 216 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 252 (519)
+...|+.++|...+-.... ++...|...+..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7788999999998876554 23336666665553
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.036 Score=42.09 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 010057 165 RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 165 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~ 221 (519)
....|+..+..+++.+|+..+++..|.++.+...+. +++.+..+|..|++-+...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 346778888888888888888888888888887765 677777788888776554433
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.25 Score=47.41 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCch-----------h
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA-----------T 430 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~ 430 (519)
+...+..-+.+...+..|.++|..|-+. ..+++.....+++.+|..+-+..++..||+. -
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3444444444555566666666665332 2355556666777777777766666544432 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
|.-.-.+|.+.|+-.+|..+++++...
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 334456788888889999998887654
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.76 E-value=0.43 Score=43.67 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKG---INIDAVTYTSVMHWLSN---AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 67 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
.+...++-.|....+++...++.+.+.... +.-+..+-....-++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556888999999999999998752 22133333445556667 899999999999976666677888998
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH---HH-HHHcC--
Q 010057 141 AYMKILFL---------NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK-Y---EEALEIF---SK-MQEAG-- 201 (519)
Q Consensus 141 ~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~---~~a~~~~---~~-m~~~g-- 201 (519)
.+.+.|-. ....++|...|.+--+. .||.++=-.+...+...|. . .+..++- .. ..+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88876643 22467788888766553 4555432222223333332 2 2222322 22 11223
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 202 -VQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 202 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
-..|-..+.+++.++.-.|+.++|.+..+.|.+....
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3456678889999999999999999999999987533
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0021 Score=44.42 Aligned_cols=65 Identities=31% Similarity=0.403 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRK----GI-HPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++++++..++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357888999999999999999999988754 21 122 557888888999999999999999987654
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.66 E-value=0.061 Score=47.06 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEALEIFSKMQEAG--VQPDKAACN 210 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~ 210 (519)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.- -......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34666666667789999999999999885 3443 467788889999999999999999998641 111234555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 211 ILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.+..++...|+.+.|..+|+.+.+..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5667788899999999999988876543
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.62 E-value=0.039 Score=41.90 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
|..++..+|.++++.|+.+....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777777665432 21111100 0000 0112245666667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQ-RGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~ 183 (519)
+|+.++++..|+++++...+ .+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777666554 3556566666666664443
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=0.54 Score=42.57 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHH
Q 010057 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGV 437 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 437 (519)
|+..-|-..+.+++..++|++..++... .-.+.-|-..+.+|.+.|+..+|..++.+++ +..-+..
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~--------~~~rv~~ 271 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP--------DEERVEM 271 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC--------hHHHHHH
Confidence 4444444455555555555444433211 1122334444444444555555544444421 1334444
Q ss_pred HHhcCCHHHHHHH
Q 010057 438 YFSAGSADKALKI 450 (519)
Q Consensus 438 ~~~~g~~~~A~~~ 450 (519)
|.+.|++.+|.+.
T Consensus 272 y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 272 YLKCGDYKEAAQE 284 (319)
T ss_pred HHHCCCHHHHHHH
Confidence 4555555554443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.11 Score=43.94 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+...++|+.=. ..+-+.+++.+.-.|.+.-...++++..+...+.+......|.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55566664433 24566777777777888888888888887765556777778888888888888888888877
Q ss_pred HHCCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010057 163 IQRGLPPNCYTYTVLM-----EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237 (519)
Q Consensus 163 ~~~g~~p~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 237 (519)
.+..-..|..+++.++ ..|.-.+++..|...++++....- .|+...|.=.-+..-.|+...|.+.++.|++..+
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6543344444444433 345556778888888887776532 2444444433334446888888888888887665
Q ss_pred cc
Q 010057 238 AL 239 (519)
Q Consensus 238 ~~ 239 (519)
.+
T Consensus 318 ~~ 319 (366)
T KOG2796|consen 318 RH 319 (366)
T ss_pred cc
Confidence 54
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=1.1 Score=44.87 Aligned_cols=175 Identities=17% Similarity=0.229 Sum_probs=114.4
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhCCCCCCHHHHHHHHh-------cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVNQVLK-------THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
++-..+..+.+..-++-|+.+.+..+.. ......+.. .-|+++.|...|-+-. .-+.| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d--~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD--EDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHH
Confidence 4556777888888899999998877543 333333333 3388999987776543 22233 235566
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
|....+....-.+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66667777888888889888886 66777889999999999988877776544 2211 11234556666666667776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
.-+-..... +......++ -..+++++|++++..+.
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 655444332 333334443 35678889988887663
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.23 Score=43.19 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL---NDRVKEATDVYKEMIQRGLPPNCYTYTV 176 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 176 (519)
|...|-.|-..|...|+.+.|..-|.+..+.. .+|...+..+..++.. .....++.++|+++.... +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 56666666666666666666666666665541 2234444444433322 223456666666666642 124445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555666666777777777666664
No 211
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.49 E-value=0.022 Score=38.09 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 010057 172 YTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAG-ETRTIILILRYMK 233 (519)
Q Consensus 172 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~ 233 (519)
.+|..+...+...|++++|+..|++..+.. +-+...+..+..+|.+.| ++++|.+.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444555555555554444431 112234444444444444 3445544444433
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.30 E-value=0.46 Score=40.04 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEAL 191 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~ 191 (519)
+..-|.+.|.+..|..-++.+.+. -|++ ...-.++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456788999999999999999886 3443 34567788888888877544
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.25 E-value=0.042 Score=46.85 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChh
Q 010057 63 NHDRFTYTTMLDIFGE-----AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIV 137 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 137 (519)
..|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+..- .|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 4455566666655543 34566677777888888888888888888877644321 11110
Q ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 010057 138 SYTAYMKILFL-NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY-EEALEIFSKMQ 198 (519)
Q Consensus 138 ~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 198 (519)
+. ..+.. -.+-+=+.+++++|...|+-||..+-..|++++.+.+.. .+...+.-.|.
T Consensus 128 -fQ---~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 -FQ---KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -HH---HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11 11111 112234677888888888888888888888888777653 34444444444
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.24 E-value=0.013 Score=39.81 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=44.0
Q ss_pred HHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 010057 403 HRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 466 (519)
..|.+.+++++|.++++.+... +.++..|.....+|.+.|++++|.+.|++..+. .|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 3455666677777777666554 335677788888888888999999888888877 4554443
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.22 E-value=0.48 Score=38.00 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHH
Q 010057 98 NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL-PPNCYTYTV 176 (519)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ 176 (519)
.|++...-.|..+..+.|+..+|...|++....-.--|....-.+.++....+++..|...++++.+.+. ..++.+-..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5677777778888889999999999998877654455677777888888888999999999988877431 012334455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+.+.+...|..++|..-|+..... -|+...-.-....+++.|+.+++..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677888888998899888888874 455544444445566777666655444443
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.19 E-value=0.07 Score=42.01 Aligned_cols=84 Identities=12% Similarity=-0.044 Sum_probs=36.6
Q ss_pred cCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 010057 407 SARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIY 485 (519)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~ 485 (519)
..|++++|+.+|+-+.-.. .|+.-|..|..+|-..+++++|+..|......+ .-|+..+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3444444444444333321 223333444444444455555555554444333 12333333444444555555555555
Q ss_pred HHHhcc
Q 010057 486 RKEKKS 491 (519)
Q Consensus 486 ~~~~~~ 491 (519)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 544433
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.14 E-value=1.3 Score=42.46 Aligned_cols=365 Identities=10% Similarity=0.035 Sum_probs=193.4
Q ss_pred ChhHHHHHHHhC-CCCCCHHHHHHHHhc----CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCChhHHHHHH
Q 010057 16 TWDSAQDLLKNL-PIKWDSYTVNQVLKT----HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE-AKRISSMKYVF 89 (519)
Q Consensus 16 ~~~~a~~~~~~~-~~~p~~~~~~~ll~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 89 (519)
..+.+..+++.+ +-.|-.+-|-.-.+. .|..+.+..+|++-+ .+++.++..|...+..+.. .|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 334455555555 555666654433332 277788888888775 4567777777776666543 45666777777
Q ss_pred HHHHhC-C--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------cCCHHHHHH
Q 010057 90 ELMQEK-G--INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL---------NDRVKEATD 157 (519)
Q Consensus 90 ~~m~~~-~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~~~~~~a~~ 157 (519)
+..+.. | +. +...|-..|..-..++++.....++++..+- ...-|+..-..|.+ ....+++.+
T Consensus 138 e~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 138 ERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 776652 2 22 3445667777667777788888888877664 22223322222221 112222222
Q ss_pred HHHHHH--------------------HCCCCCCHH--HHHHHHH-------HHHHcCCHHHHHHHHHHHHHc---CCC--
Q 010057 158 VYKEMI--------------------QRGLPPNCY--TYTVLME-------YLVRAGKYEEALEIFSKMQEA---GVQ-- 203 (519)
Q Consensus 158 ~~~~m~--------------------~~g~~p~~~--~~~~li~-------~~~~~~~~~~a~~~~~~m~~~---g~~-- 203 (519)
+-.... ..+-+-+.. ..+.+-. ++............|+.-.+. .+.
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl 292 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL 292 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc
Confidence 222111 110011111 1111111 111222223333333333221 122
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 204 --PDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 204 --p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
++..+|..-+.--...|+.+.+.-+|+...-. ...|
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-----cA~Y------------------------------------- 330 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-----CALY------------------------------------- 330 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-----Hhhh-------------------------------------
Confidence 24557888888888889998888888765431 1111
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKS--IQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE 359 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (519)
..+|-..+......|+...+..++..-.+-. -.|....+.+.+. -..|+.+.|..+++.+.+.- |+
T Consensus 331 --------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~--pg 398 (577)
T KOG1258|consen 331 --------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY--PG 398 (577)
T ss_pred --------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC--Cc
Confidence 1123333333334466666666665543322 2334444444443 34578999999999887754 44
Q ss_pred HHH-HHHHHHHHHhcCCcchHH---HHHHHHHhcCCCccchhHHHHHHH-----HhcCCCcchHHHHhhhCCcC-CCCch
Q 010057 360 RTA-YLALIGILIKLNTFPKVA---EIVEEMTKAGHSLGVYLGALLIHR-----LGSARRPVPAAKIFSLLPED-QKCTA 429 (519)
Q Consensus 360 ~~~-~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~-~~~~~ 429 (519)
..- -..-+....+.|+.+.+. +++....... -+..+...+.-- +.-+++.+.|..++..+.+. +++..
T Consensus 399 ~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 399 LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 322 223344556777777777 4444433322 222222222222 34467888999999888776 56677
Q ss_pred hHHHHHHHHHhcCC
Q 010057 430 TYTALIGVYFSAGS 443 (519)
Q Consensus 430 ~~~~li~~~~~~g~ 443 (519)
.|..++......+.
T Consensus 477 ~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 477 LYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhCCc
Confidence 88888887776653
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.09 E-value=0.03 Score=51.75 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG----TFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
...|+.+..+|.+.|++++|+..|++.++. .|+.. +|..+..+|...|+.++|...+++..++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555555544 33322 3555555555555555555555555544
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.08 E-value=0.14 Score=43.73 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 99 IDAVTYTSVMHWLSNA-----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
-|..+|-..+..+... +.++-....++.|.+-|+.-|..+|+.||+.+=+-.- .|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 3666777777666543 4566666667777788888888888888776543221 111 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET-RTIILILRYMKE 234 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 234 (519)
|....-.|-+ +-+-+++++++|...|+.||-.+-..|++++.+.+-. .+..++.-.|.+
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2222222222 2345788999999999999999999999999988764 345555555544
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.07 E-value=0.27 Score=44.59 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDA----VTYTSVMHWLSNAGDVDGAVNIWE 125 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~ 125 (519)
.-+++.|+......+|+...+.|-. |. .+|..|-++|.-.+++++|++...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4567888888888888888887754 43 356667778888888888887643
No 221
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=1.1 Score=40.85 Aligned_cols=270 Identities=14% Similarity=0.060 Sum_probs=128.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~ 153 (519)
.+.+..++..|...+....+.... +..-|..-...+...|++++|.-=.+.-.+. .|. .....-.-+++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 345566777777777777766443 3444554555555556666655444333322 111 112222333333333333
Q ss_pred HHHHHHH---------------HHHHCCC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 010057 154 EATDVYK---------------EMIQRGL-PPNCYTYTVLM-EYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE-- 214 (519)
Q Consensus 154 ~a~~~~~---------------~m~~~g~-~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-- 214 (519)
+|.+.++ ....... +|.-.+|-.|- .++...++.++|.+.-..+.+.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 3333332 1111111 12333343332 35556778888877776666532 1123333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
++...++.+.+...|.+....++. ......+........ .+.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpd--h~~sk~~~~~~k~le------------------------------------~~k 253 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPD--HQKSKSASMMPKKLE------------------------------------VKK 253 (486)
T ss_pred ccccccchHHHHHHHhhhhccChh--hhhHHhHhhhHHHHH------------------------------------HHH
Confidence 333457777788777776664432 222111111110000 000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-HHHHHHHHHHH
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDK---SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-RTAYLALIGIL 370 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 370 (519)
.--....+.|.+..|.+.+...... +++|+...|.....+..+.|+..+|+.--....+.. |. ...|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHH
Confidence 1112344666777777766664432 344555556666666666677777666665555322 11 11122333344
Q ss_pred HhcCCcchHHHHHHHHHhcC
Q 010057 371 IKLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~ 390 (519)
...++|+.|.+-++...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44566666666666665543
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.97 E-value=0.88 Score=38.83 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDK---AACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.+.+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|-..|-.+.|.+.-.-+...-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 3556788889999999999998876 22222 245556778888888888887766665543
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.97 E-value=0.5 Score=43.30 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 463 LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 463 ~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...+.+++.++.-.|+.++|.+..+++..+.|
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 33444555566666666666666666665544
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.94 E-value=0.18 Score=37.78 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=57.1
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHhc-------------------------CCChHHHHHHHHHHhhcCCCCCC
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKT-------------------------HPPMEKAWLFFNWVSRSRGFNHD 65 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~-------------------------~~~~~~A~~~~~~~~~~~~~~~~ 65 (519)
++-.|..++-.++..+.-.+-+...+|.+|.. ||+..+....+-.+ ..+
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~------n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR------NKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT------T--
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh------cch
Confidence 44567777777777766222344455555432 24444444444332 233
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC 132 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 132 (519)
.......+..+.+.|+-+...+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444555566666666666666666665542 244556666666666666666666666666666554
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.90 E-value=0.48 Score=43.03 Aligned_cols=130 Identities=15% Similarity=-0.008 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHH----HhCCCC-cCHHHHHHHHHHHHhcCCcchHHHHHHHHHh----cCC-Cccch
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYS----VKMDLN-LERTAYLALIGILIKLNTFPKVAEIVEEMTK----AGH-SLGVY 396 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 396 (519)
.|..+-+.|.-.|+++.|+..-+.- .+.|-+ .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4566666677778888887655432 222322 2234577888888888999999888877542 221 12334
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCC-------cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLP-------EDQKCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
+.-+|.++|.-..+++.|+..+.+-. ..-....++.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44556666666666666666654321 1111244666677777777777777766655443
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.84 E-value=0.7 Score=44.64 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCChhh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEK-GINID-----AVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYPTIVS 138 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 138 (519)
+..+++..+=.||-+.+.+.+..-.+. ++.-. .-.|+..+..+.. ..+.+.|.++++.+..+ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555556666666666554442 12211 1123444433332 34567777888877776 566665
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 139 YTAYM-KILFLNDRVKEATDVYKEMIQRG---LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 139 ~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
|...- +.+...|++++|.+.|++..... -+.....+--+.-++.-.++|++|.+.|..+.+..-. +..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 54433 34556778888888887654311 1123334555666677788888888888888765322 3333333322
Q ss_pred -HHHhcCCh-------HHHHHHHHHHHH
Q 010057 215 -KCCKAGET-------RTIILILRYMKE 234 (519)
Q Consensus 215 -~~~~~g~~-------~~a~~~~~~~~~ 234 (519)
++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 23345666 778888877654
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.72 E-value=0.74 Score=36.01 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
.++..+...+.+.....+++.+...+ ..+....+.++..|++.+. .+..+.+.. ..+.+-...++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444556666666666666655 2455566666666665432 222222221 122233333455555555
Q ss_pred CcchHHHHhhhCCcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHH
Q 010057 410 RPVPAAKIFSLLPEDQKCTATYTALIGVYFSA-GSADKALKIYKT 453 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 453 (519)
.++++.-++.++.. |...+..+... ++++.|++++.+
T Consensus 84 l~~~~~~l~~k~~~-------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDGN-------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhcC-------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 55555555544432 22233333333 555555555543
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.042 Score=37.82 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLK----EC-YPT-IVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+|+.+...|...|++++|+..|++.... |- .|+ ..+++.+..++...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444555555555544444321 10 011 233444444444444444444444443
No 229
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.59 E-value=3.7 Score=43.10 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=59.2
Q ss_pred HHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccch--hHHHHHHHHhcCCC
Q 010057 333 EVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVY--LGALLIHRLGSARR 410 (519)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 410 (519)
..+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+..++... -+.. +.-.|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333444566666555554321 123456677777777777777766431 1211 22456666777788
Q ss_pred cchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 411 PVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
.-+|-++..+..++ ..-.+..|++...|++|+.+-...
T Consensus 1015 h~eAa~il~e~~sd------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 88887777766553 233444555666677776665443
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.47 E-value=1.4 Score=37.63 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPSL---GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.+-|.+.|.+-.|..-+++|++. .+-.. ..+-.+..+|.+.|..++|.+.-+-+..-.|+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 4566789999999999999999988 23223 35666778999999999998888766554443
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.47 E-value=0.23 Score=39.20 Aligned_cols=86 Identities=6% Similarity=-0.033 Sum_probs=47.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEAT 156 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 156 (519)
...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|......+. -|...+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666666554433 344445555555555666666666655544432 24444445555566666666666
Q ss_pred HHHHHHHH
Q 010057 157 DVYKEMIQ 164 (519)
Q Consensus 157 ~~~~~m~~ 164 (519)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655554
No 232
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.38 Score=43.69 Aligned_cols=153 Identities=11% Similarity=-0.058 Sum_probs=103.1
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCCcchHHHHHHHHHhcCCCccchhHHHH----------
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGI--LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL---------- 401 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------- 401 (519)
.+...|+.++|...-....+..- ...+...+++ +--.++.+.+...|.+.+..+ |+.......
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 44556788888877766665431 1223334433 334578889999999988765 443322221
Q ss_pred ---HHHHhcCCCcchHHHHhhhCCcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH---
Q 010057 402 ---IHRLGSARRPVPAAKIFSLLPEDQK-----CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL--- 470 (519)
Q Consensus 402 ---~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~--- 470 (519)
.+-..+.|++..|.+.+.+.....| +...|-....+..+.|+..+|+.--++..+. |+.-...++
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 1224577899999999988766544 4556777777888999999999998887765 433333333
Q ss_pred HHHHhcCChhHHHHHHHHhcccCcc
Q 010057 471 AGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 471 ~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++...++|++|.+.+++..+...+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3567789999999999988776554
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.29 E-value=2.5 Score=39.30 Aligned_cols=443 Identities=13% Similarity=0.102 Sum_probs=227.1
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--Hh
Q 010057 40 LKTHPPMEKAWLFFNWVSRSRGFNHD----RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWL--SN 113 (519)
Q Consensus 40 l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~ 113 (519)
|...++..+|.++|.++.++..-.|. ....+-+|++|.. ++.+.....+..+.+. .| ...|-.+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44458999999999988754422222 2234566777764 4777777777777664 22 23344444332 36
Q ss_pred cCChhhHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLK--ECYP------------TIVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPPNCYTYT 175 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~ 175 (519)
.+.+++|.+.+..-.+. +-.| |-.-=+..+.++...|.+.++..+++++... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899999888776654 2221 1122256677888999999999999988764 3447888999
Q ss_pred HHHHHHHHcC--------C-------HHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 010057 176 VLMEYLVRAG--------K-------YEEALEIFSKMQEA------GVQPDKAACNILIEKCCKA--GETRTIILILRYM 232 (519)
Q Consensus 176 ~li~~~~~~~--------~-------~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~ 232 (519)
.++-.++++- . ++-+.-+..+|... .+.|-......++....-. .+..--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 8666555431 1 22233333333221 2445555555555444332 2233344455545
Q ss_pred HHcCCccCHHHHHHHH-HHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 233 KENRLALRYPVFKEAL-QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
...-+.|+...+...+ ..+.. +.+++.+-....... .....-+.-...+..++....+.++...|..
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~----------~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q 319 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS----------KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ 319 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555566555444332 22222 111111110000000 0000001111233445555666666666666
Q ss_pred HHHHHHhcCCCccHH-----HHHHHHHHHhcc----CChhhHHHHHHHHHhCCCCcCHHH-HHHH---HHHHHhcCC-cc
Q 010057 312 LLSGIMDKSIQLDSA-----VISTIIEVNCDH----RRRDGALLAFEYSVKMDLNLERTA-YLAL---IGILIKLNT-FP 377 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~-----~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~-~~ 377 (519)
.+.-+...+...+.. +-..+.+..|.. .+...-+.+|.......+ |..- ...+ ..-+.+.|. -+
T Consensus 320 ~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 320 YLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccH
Confidence 665554332221100 011111222211 122333444444443332 2111 1122 223344454 77
Q ss_pred hHHHHHHHHHhcCCCccchhHHHHHHH----Hhc---CCCcchHHHHhhhCCcC--CC----CchhHHHHHHH--HHhcC
Q 010057 378 KVAEIVEEMTKAGHSLGVYLGALLIHR----LGS---ARRPVPAAKIFSLLPED--QK----CTATYTALIGV--YFSAG 442 (519)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~---~g~~~~A~~~~~~~~~~--~~----~~~~~~~li~~--~~~~g 442 (519)
+|+++++.+.+-- +.|...-|.+... |.. ...+.+-.++-+-+.+. +| +...-|-|..| +..+|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8888888888743 2344443433322 221 12233333322222222 11 12233445444 45689
Q ss_pred CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHhhh
Q 010057 443 SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKICDL 511 (519)
Q Consensus 443 ~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 511 (519)
++.++.-.-.-+. .+.|++.+|..+.-+.....++++|..++..+ +|+....+.-+.+.
T Consensus 477 ey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--------P~n~~~~dskvqKA 535 (549)
T PF07079_consen 477 EYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--------PPNERMRDSKVQKA 535 (549)
T ss_pred cHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC--------CCchhhHHHHHHHH
Confidence 9998776554444 35899999999999999999999999999654 45555555555443
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.27 E-value=1.7 Score=37.33 Aligned_cols=201 Identities=18% Similarity=0.101 Sum_probs=140.6
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHH-H
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDK-SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIG-I 369 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 369 (519)
........+...++...+...+...... ........+......+...++...+...+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 3345556777788888888777776543 3344555666677777777888999999998887554331 22222223 7
Q ss_pred HHhcCCcchHHHHHHHHHhcCC--CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC--chhHHHHHHHHHhcCCHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGH--SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC--TATYTALIGVYFSAGSAD 445 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 445 (519)
+...|+++.+...+........ ......+......+...++.+.+...+.......++ ...+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 8899999999999999866221 122333333344466788899999999888776443 577888888999999999
Q ss_pred HHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 446 KALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 446 ~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.|...+...... .|+ ...+......+...+..+++...+++..+..|.
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998877 344 344555555555777799999999888777665
No 235
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.20 E-value=2.2 Score=38.22 Aligned_cols=131 Identities=15% Similarity=0.262 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhhHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCC-
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSN--AG----DVDGAVNIWEEMKLKEC---YPTIVSYTAYMKILFLNDR- 151 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~- 151 (519)
++....+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777778888777666665553332222 22 24567788888877622 1234455555544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 152 ---VKEATDVYKEMIQRGLPPNCY--TYTVLMEYLVRAGK--YEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 152 ---~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
.+.++.+|+.+.+.|+..+.. ..+.++..+....+ ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 355677777777777665433 22333332222222 4477778888888888777777665543
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=1.7 Score=36.79 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhC--CCCcCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKM--DLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
.|.--...|..+|.++-|-..+++.-+. ++.|+... |..-+......++...|.+++ ...-
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---------------gk~s 157 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---------------GKCS 157 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---------------HHhh
Confidence 3445555666666666666555554432 33343322 333333333333333332222 2233
Q ss_pred HHHhcCCCcchHHHHhhhCCcC------CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHH
Q 010057 403 HRLGSARRPVPAAKIFSLLPED------QKC-TATYTALIGVYFSAGSADKALKIYKTMCRKG---IHPSLGTFNVLLAG 472 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~l~~~ 472 (519)
..+.+..++++|-..|.+-... -++ -..|-..|-.|....++..|.+.++.-..-+ -.-|..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 3444555555555444432211 011 1235555556666677777777777643321 12345567777777
Q ss_pred HHhcCChhHHHHHH
Q 010057 473 LEKLGRVSDAEIYR 486 (519)
Q Consensus 473 ~~~~g~~~~a~~~~ 486 (519)
|.. |+.+++..++
T Consensus 238 yd~-gD~E~~~kvl 250 (308)
T KOG1585|consen 238 YDE-GDIEEIKKVL 250 (308)
T ss_pred hcc-CCHHHHHHHH
Confidence 643 6666655544
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.02 E-value=0.65 Score=44.21 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
++++.+.++.+.-.--.. -| ..-.+.++..+-+.|-.+.|.++-.+-..+ .....+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHH
Confidence 577776666541110111 12 555788888888888888888875443322 4456678888888887
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 203 (519)
.++. ++...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.++..++.+.....|-
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 6543 3677999999999999999999999987654 56677778888998888888877776652
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 204 PDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 204 p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
++....++...|+.++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666677778888888887765
No 238
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.02 E-value=1.4 Score=38.37 Aligned_cols=138 Identities=10% Similarity=0.087 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChhhHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 80 KRISSMKYVFELMQE-KGINIDAVTYTSVMHWLSN-AG-DVDGAVNIWEEMKL-KECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
.-..+|.++|+.... ..+--|..+...+++.+.. .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666653222 2234466666666666655 22 22223333333332 23456666777777777777777777
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHH
Q 010057 156 TDVYKEMIQR-GLPPNCYTYTVLMEYLVRAGKYEEALEIFSK-----MQEAGVQPDKAACNILIEKCC 217 (519)
Q Consensus 156 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~~~ 217 (519)
.++++..... +..-|...|..+|+.....|+..-..++.++ +++.++..+...-..+-+.+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 7777666554 4455667777777777777777766666654 244556666665555544443
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=2.4 Score=37.12 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=101.7
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
.....|+..+|..+|+........ +...-..+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 346678899999999888876422 3455667888999999999999999988654322222233344555666666666
Q ss_pred HHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhH
Q 010057 414 AAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAGLEKLGRVSD 481 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~g~~~~ 481 (519)
...+-+.....+.|+..--.+...+...|+.++|++.+-.+.+.+ -.-|...-..++..+.-.|.-+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 666666666655567777788889999999999999877766552 12355566777777777674433
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.79 E-value=0.91 Score=43.23 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=109.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
...-.++++.+..++..-.-.. ..+....+.+++.+-+.|-++.|+.+.. |+. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 5566788888666664111000 1134557788888888899999987754 222 22344567899888
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
|.++.+.. .+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.++-.++.+.....|
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87665443 4677999999999999999999999999876 7888888999999988888887777776
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 459 IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 459 ~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
-++..+.++.-.|+.++..+++.+..
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 36677777888899999999887653
No 241
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=1.1 Score=35.53 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
..+|.++......+-+-..|-+.....-..|.-+-.+.|++.+|..+|+.+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 345555555554444433332222233333444445555555555555544
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.64 E-value=0.83 Score=42.66 Aligned_cols=66 Identities=9% Similarity=-0.059 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA----VTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+.+...|+.+..+|.+.|++++|...|+...+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888888888889999998888887763 442 35888888888888888888888888765
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=5.2 Score=39.76 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=87.6
Q ss_pred CCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHH
Q 010057 355 DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTAL 434 (519)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 434 (519)
|......+.+--+.-+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-+++-..... +.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----PIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----PIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----CCCchhH
Confidence 333444555666667778898888888776653 47888888889999999999887776655543 7889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 435 IGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
+.+|.+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.+.--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 99999999999999998654211 1 56778888899888876653
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.63 E-value=1.7 Score=34.00 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND 150 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 150 (519)
.++..+...+........++.+.+.+. .+...++.++..|++.. .+...+.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444444555555555555555442 34455555555555442 2222222221 112333334555555555
Q ss_pred CHHHHHHHHHHH
Q 010057 151 RVKEATDVYKEM 162 (519)
Q Consensus 151 ~~~~a~~~~~~m 162 (519)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=2.9 Score=36.60 Aligned_cols=148 Identities=19% Similarity=0.207 Sum_probs=95.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3446778888888888888775433 456677788888888888888888888765421112222223344555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+..++-++.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..|+..+.-.|.-+-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 555555555543 226777777888888888888888777666543 433 556667777777777744333
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=2.5 Score=35.74 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
++.|.-+.++|.+.. --+..|+.....|..+|..+.|-..+++.
T Consensus 74 yEqaamLake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 344444444444431 01234555556666666666655555544
No 247
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.44 E-value=2.1 Score=34.29 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=12.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 90 ELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 90 ~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..+.+.++.|+...+..+++.+.+.|+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444444444
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.14 Score=46.29 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=68.7
Q ss_pred HHHHHhcCCcchHHHHHHHHHhc-----CCCc---------cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhH
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKA-----GHSL---------GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATY 431 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 431 (519)
.+.+.+.|++..|..-|+...+. +.++ -..++..|.-++.+.+++.+|.+.-+..... ++|+-..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 45667778888888887776531 1111 1223344555566666666666666555443 3445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH-HhcCC-hhHHHHHHHHhccc
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL-EKLGR-VSDAEIYRKEKKSI 492 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~-~~~g~-~~~a~~~~~~~~~~ 492 (519)
---..+|...|+++.|+..|+++++. .|+......=+..| .+... .++..++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55566666666777777777666665 45544444444444 22222 23335556555433
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.08 E-value=0.13 Score=28.83 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 431 YTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.02 E-value=0.07 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.+|..+..+|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35666777777777777777777777766
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.02 E-value=5.6 Score=37.67 Aligned_cols=56 Identities=5% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECY-PTIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+..++-+.|+.++|++.|.+|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333344445555555555554432111 01223344445555555555555555444
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=1.1 Score=38.66 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDL--NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
.|+.-+.. .+.|++..|...|....+... .-....+-.|..++...|+++.|..+|..+.+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-------------- 208 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-------------- 208 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC--------------
Confidence 45444443 344556666666666665421 1222335556666666666666666666665532
Q ss_pred HhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 405 LGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
++.+.-+...-.|..+..+.|+.++|...|++..+.
T Consensus 209 -----------------P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 209 -----------------PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred -----------------CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111122345555666666666777777777766665
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.99 E-value=2.6 Score=33.74 Aligned_cols=134 Identities=11% Similarity=0.136 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010057 50 WLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 129 (519)
.++.+.+ ...+++|+...+..+++.+.+.|++....++ ...++-+|.......+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl-~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSL-NQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 5666666 4678899999999999999999987665554 466666676655554433332 22333333333333
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 130 KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 130 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+ =...+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+|+-..
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1124566677777888888888887665322 22223445555555555544444444443
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.98 E-value=4.8 Score=36.72 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=84.5
Q ss_pred HHHHHHHHHH--hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--
Q 010057 103 TYTSVMHWLS--NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL--FLNDRVKEATDVYKEMIQRGLPPNCYTYTV-- 176 (519)
Q Consensus 103 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-- 176 (519)
-|..|-.++. -.|+-..|.++-.+-.+. +.-|....-.|+.+- .-.|+++.|.+-|+.|.. |+.|-..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3444544443 357777777776665432 233666666666544 347999999999999986 4444333
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 177 --LMEYLVRAGKYEEALEIFSKMQEAGVQPDK-AACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 177 --li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
|.-.--+.|+.+.|..+-+..-.. .|.. ....+.+...|..|+++.|+++++.-+...
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 333335678888888888777654 3333 477888999999999999999998766543
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.96 E-value=1.4 Score=34.83 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=26.8
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHhc-CCChHHHHHHHHHHh
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLKT-HPPMEKAWLFFNWVS 57 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~~-~~~~~~A~~~~~~~~ 57 (519)
+..+..-++.++.+++..+++.+ |..|...++...+.- .|+|.+|+.+|+.+.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34444455555666666666655 223333444444432 256666666666553
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.89 E-value=0.2 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
++..+..+|.+.|++++|++.++++.+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777666653
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=93.88 E-value=1.7 Score=40.77 Aligned_cols=145 Identities=11% Similarity=0.020 Sum_probs=97.7
Q ss_pred ChhhHHHHHHHHHhC-CCCcCHH-HHHHHHHHHHh---------cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 340 RRDGALLAFEYSVKM-DLNLERT-AYLALIGILIK---------LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
..+.|+.+|.+.... ...|+.. .|..+..++.. ..+..+|.+..+...+.+ +.|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788888888732 3445433 24444333322 223456777777777776 56777777788877888
Q ss_pred CCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhcCChhHHHH
Q 010057 409 RRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS---LGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
++++.|...|++.....|| ...|......+.-.|+.++|.+.+++..+. .|. .......++.|+..+ .++|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 8899999999999887666 456777777777899999999999997766 343 233444455666655 566666
Q ss_pred HHHH
Q 010057 485 YRKE 488 (519)
Q Consensus 485 ~~~~ 488 (519)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 5543
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.84 E-value=0.94 Score=39.67 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAACN 210 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 210 (519)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466777777777788888888888877753 33677788888888888888888888777754 47788777777
Q ss_pred HHHHH
Q 010057 211 ILIEK 215 (519)
Q Consensus 211 ~li~~ 215 (519)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=0.33 Score=41.69 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=63.1
Q ss_pred cCCCcchHHHHhhhCCcCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCC
Q 010057 407 SARRPVPAAKIFSLLPEDQKC----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS----LGTFNVLLAGLEKLGR 478 (519)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l~~~~~~~g~ 478 (519)
+.|++.+|...|....+.-|+ +..+-=|..++...|++++|..+|..+.+. .|+ +..+--|..+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHhcC
Confidence 445566666666554443222 233444888999999999999999999875 232 3456667778899999
Q ss_pred hhHHHHHHHHhcccCcc
Q 010057 479 VSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 479 ~~~a~~~~~~~~~~~~~ 495 (519)
.++|...|+++.+-.|+
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999999887775
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.76 E-value=8.5 Score=38.86 Aligned_cols=90 Identities=11% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc-
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG-VQPDKAACNILIEKCCKA- 219 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~- 219 (519)
....+.-.|+++.|.+.+.+ ..+...|.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34556678899999988877 2223445555555554443222222111 2222110 011114567778777764
Q ss_pred --CChHHHHHHHHHHHHcC
Q 010057 220 --GETRTIILILRYMKENR 236 (519)
Q Consensus 220 --g~~~~a~~~~~~~~~~~ 236 (519)
.++..|.+++-.+....
T Consensus 339 ~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFK 357 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-
T ss_pred hccCHHHHHHHHHHHHHcC
Confidence 56777887777665543
No 261
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.75 E-value=0.0049 Score=48.64 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 333 EVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333334444444444444444444433333
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.74 E-value=0.91 Score=39.75 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-----RGLPPNCYTYT 175 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 175 (519)
..++..++..+..+|+.+.+...++++..... -+...|..+|.+|.+.|+...|...|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45788888999999999999999999988743 3788999999999999999999999988765 58889888877
Q ss_pred HHHHHH
Q 010057 176 VLMEYL 181 (519)
Q Consensus 176 ~li~~~ 181 (519)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 776663
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.79 Score=41.76 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=85.5
Q ss_pred HHhccCChhhHHHHHHHHHhC-----CCCc---------CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 334 VNCDHRRRDGALLAFEYSVKM-----DLNL---------ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
.|.+.|++..|...|++.... +..+ -..++..+..++.+.+++..|++.-...+..+ ++|....-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 456666666666666654332 1111 12357778888999999999999999999877 56776666
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCCCCchh-HHHHHHHHHhcCCHH-HHHHHHHHHHHC
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQKCTAT-YTALIGVYFSAGSAD-KALKIYKTMCRK 457 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~-~A~~~~~~m~~~ 457 (519)
.-..++...|+++.|+..|+++.+..|+... -+.++.+--+...+. +..++|..|...
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6778899999999999999999887665444 444444444444433 347788888765
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=3.3 Score=36.83 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCCHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSY----TAYMKILFLNDRVK 153 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~~~~ 153 (519)
.+|+..+|...|+.+.+. .+-|...+...=.+|...|+.+.-...++++... ..||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555543 2224445555555555555555555555554432 12233222 22223334455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
+|++.-++..+.+ +-|...-.++...+--.|++.++.++..+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555432 22344444444445555555555555443
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.55 E-value=0.079 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|..+..+|...|++++|...+++..+++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 44444455555555555555555554444
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.46 E-value=0.062 Score=30.23 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhcccC
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 493 (519)
+|..+...|.+.|++++|.+++++...+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47789999999999999999999966543
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=2 Score=38.19 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=103.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHH----HHHHHhcCCc
Q 010057 301 LKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLAL----IGILIKLNTF 376 (519)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~ 376 (519)
...|+..+|...++++.+. .+.|...+.-.=.+|.-+|+.+.-...++++... ..|+...|..+ .-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567777777777776653 3446666777777888888888888888877654 12344333322 2234567888
Q ss_pred chHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-----chhHHHHHHHHHhcCCHHHHHHHH
Q 010057 377 PKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-----TATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
++|++.-++..+.+ +.|.-...++.+.+-..|++.++.++..+-...-.+ ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 89988888887765 456677778888888888999988887766554111 223444445566678899999998
Q ss_pred HHHHHC
Q 010057 452 KTMCRK 457 (519)
Q Consensus 452 ~~m~~~ 457 (519)
+.-+-.
T Consensus 271 D~ei~k 276 (491)
T KOG2610|consen 271 DREIWK 276 (491)
T ss_pred HHHHHH
Confidence 764433
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=8.4 Score=38.98 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS----NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
...-|..+.+..-++-|..+.+ ..+ .+......++..|+ +.|++++|...|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4455556666666666666543 222 24444444444443 567788777776654322 122 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~ 223 (519)
-|.......+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. .| ....+..|.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 556666667777777777777765 66666777888888888777776665554 2222 12 233455555555555
Q ss_pred HHHHHHH
Q 010057 224 TIILILR 230 (519)
Q Consensus 224 ~a~~~~~ 230 (519)
.|..+-.
T Consensus 481 ~a~~LA~ 487 (933)
T KOG2114|consen 481 EAELLAT 487 (933)
T ss_pred HHHHHHH
Confidence 5555443
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.13 E-value=0.11 Score=28.57 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
+..+...+...|++++|.+.+++..++.|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444455555555555555555555544
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.92 E-value=3.2 Score=31.43 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.-+......|.-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344445555555555555555432 2344455555555555555555555555555555544
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.84 E-value=4.2 Score=33.27 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD--KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.+...+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777777777777777777776533332 23556677777777777777777666554
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.80 E-value=8.3 Score=35.98 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMD-LNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
...|...+++-.+....+.|..+|-++++.+ +.++...+++++.-++ .|+...|..+|+.=...- +.+..-..-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456667777667777888999999998888 5577777888876554 578888888888766542 223333344556
Q ss_pred HHhcCCCcchHHHHhhhCCcC-CCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 404 RLGSARRPVPAAKIFSLLPED-QKC--TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
.+...++-+.|..+|+...+. ..+ ...|..+|.--..-|+...|..+=++|.+. -|-..+...+.+-|.-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 667788888899999855432 112 457889999888899999999999999877 6777676666666643
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.76 E-value=2.7 Score=32.50 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=36.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 77 GEAKRISSMKYVFELMQEKGIN--IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
.+.|++++|.+.|+.+..+-.. -.....-.|+.+|.+.++++.|...+++..+....--..-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3556666666666666553111 12234444556666666666666666666555322222344444444433
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.65 E-value=1.6 Score=35.50 Aligned_cols=90 Identities=16% Similarity=-0.016 Sum_probs=55.3
Q ss_pred HHHHhcCCCcchHHHHhhhCCcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 010057 402 IHRLGSARRPVPAAKIFSLLPEDQKCT----ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g 477 (519)
...+..++++++|+.-++.....+.|. ..=-.|.+...+.|.+++|+.+++...+.+. .+.....-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 444667777777777776554432221 1223355566777888888888876655432 1222333445677788
Q ss_pred ChhHHHHHHHHhcccC
Q 010057 478 RVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 478 ~~~~a~~~~~~~~~~~ 493 (519)
+.++|..-|++..+..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888777665
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.58 E-value=7.5 Score=34.90 Aligned_cols=85 Identities=16% Similarity=0.307 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCh
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR--AG----KYEEALEIFSKMQEAGV---QPDKAACNILIEKCCKAGET 222 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~ 222 (519)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777777666553333222 22 24677788888877632 2344455555433 23332
Q ss_pred ----HHHHHHHHHHHHcCCc
Q 010057 223 ----RTIILILRYMKENRLA 238 (519)
Q Consensus 223 ----~~a~~~~~~~~~~~~~ 238 (519)
+.++.+|+.+.+.|+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 3445555555554543
No 276
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.47 E-value=9.6 Score=35.86 Aligned_cols=124 Identities=16% Similarity=0.072 Sum_probs=71.9
Q ss_pred hhhHHhhhccCChhHHHH-HHHhC---CCCCCHHHHHHHH-hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 5 ISNVYKILKYSTWDSAQD-LLKNL---PIKWDSYTVNQVL-KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~-~~~~~---~~~p~~~~~~~ll-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
...|-+....|+...|-+ ++..+ +..|+....-+.| ...|+++.+.+.+.... .-+.....+...+++..-+.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhch
Confidence 344555555566655433 23322 3345544444444 34477777777766553 22344556667777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKE 131 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 131 (519)
|+++.|..+-+.|....++ ++++........-..|-++++.-.|++....+
T Consensus 371 ~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 7777777777777776665 45544443333344566777777777766553
No 277
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.42 E-value=2.8 Score=32.56 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=27.4
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHHHHHHHHhc-CCChHHHHHHHHHHh
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSYTVNQVLKT-HPPMEKAWLFFNWVS 57 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~~ll~~-~~~~~~A~~~~~~~~ 57 (519)
+..+..-++.++++++..+++.+ +..|...++-..|.- .|+|.+|+.+|+.+.
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 33444444555666666666655 333334444444443 256666666666553
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.33 E-value=4.2 Score=31.46 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 44 PPMEKAWLFFNWVSRSRGFNH-DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
|+++.|.+.|+.+..+....| ....--.++.+|.+.+++++|...+++..+....-...-|...+.+++.
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 566666666665543333222 2334445555566666666666666665554322222334444444433
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=5.3 Score=31.93 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH-
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH- 403 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 403 (519)
..|..-++ +++.+..++|+..|..+.+.|...-+.. -..........|+...|...|.++-...-.|-..--.+-++
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444444 3667889999999999988775433322 23334456778999999999999987654443331222222
Q ss_pred --HHhcCCCcchHHHHhhhCCcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 404 --RLGSARRPVPAAKIFSLLPEDQK--CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 404 --~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
.+...|.+++.....+-+...+. ....-..|.-+-.+.|++.+|.+.|.........|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 25677888888888877665422 23445678888889999999999999887653344
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.94 E-value=14 Score=36.64 Aligned_cols=131 Identities=8% Similarity=0.022 Sum_probs=67.2
Q ss_pred cCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCh
Q 010057 14 YSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFN--------HDRFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 14 ~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~ 82 (519)
.=..++|.+..+ ..|.+..|..+-... -.++.|...|-+...-.|++ .+...-.+=+.+| .|.+
T Consensus 676 ~vgledA~qfiE---dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~f 750 (1189)
T KOG2041|consen 676 AVGLEDAIQFIE---DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEF 750 (1189)
T ss_pred HhchHHHHHHHh---cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcch
Confidence 334555555555 457777776654332 34555555554432222221 1111112223333 4889
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
++|++++-+|-++.+ .|..+.+.|++-.+.++++.- |-..| ...|+.+...++....|++|.+.
T Consensus 751 eeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877632 245555666666655554421 11111 23455555555555556666555
Q ss_pred HHH
Q 010057 159 YKE 161 (519)
Q Consensus 159 ~~~ 161 (519)
|..
T Consensus 819 Y~~ 821 (1189)
T KOG2041|consen 819 YSY 821 (1189)
T ss_pred HHh
Confidence 543
No 281
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.55 E-value=0.16 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=13.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
+++.+...|...|++++|..++++..++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3444444455555555555555444443
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=5.8 Score=35.05 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
++++++.++..=.+.|+-||..+++.+|+.+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555554444
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.37 E-value=2.9 Score=34.23 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
..+..+...|++.|+.+.|++.|.++++....+.... +..+|+...-.+++..+.........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466778888999999999999999888765554433 67788888888999888888777654
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.31 E-value=23 Score=37.73 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA--ACNILIEKCCKAGE 221 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 221 (519)
.-+.....+++|--+|+..-+. ..-+.+|..+|+|.+|..+..++... -|.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3333455555555555443221 12345566666666666666655431 1222 12445555666666
Q ss_pred hHHHHHHHHHH
Q 010057 222 TRTIILILRYM 232 (519)
Q Consensus 222 ~~~a~~~~~~~ 232 (519)
+-+|-++..+.
T Consensus 1015 h~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1015 HYEAAKILLEY 1025 (1265)
T ss_pred chhHHHHHHHH
Confidence 66666655543
No 285
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=3.1 Score=40.16 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=86.6
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFE 90 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 90 (519)
+.-+|+++.|..++..++ ++.......++...|-.++|+++- +|.. .-.....+.|+++.|.++..
T Consensus 596 ~vmrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~s----------~D~d---~rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALELS----------TDPD---QRFELALKLGRLDIAFDLAV 661 (794)
T ss_pred HhhhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhcC----------CChh---hhhhhhhhcCcHHHHHHHHH
Confidence 344566666666666664 444444455555555555555432 2211 11123345677777777654
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 91 LMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 91 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
+.. +..-|..|-++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.
T Consensus 662 e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--- 723 (794)
T KOG0276|consen 662 EAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--- 723 (794)
T ss_pred hhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence 432 45667777777777777777777776543 245566666667776665555555555542
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
.|.-.-+|...|+++++.+++..
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHh
Confidence 12233345566777777766644
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.05 E-value=15 Score=35.09 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQRGLP-PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD-KAACNILIEKC 216 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 216 (519)
-..+..++-+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+..+...+.+ ...|+..+--+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 345666777899999999999999875211 1344777899999999999999999999865433222 23666654333
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.04 E-value=11 Score=33.66 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=122.1
Q ss_pred hccCChhHHHHHHHhCCC---CCCHHHHHHH--------Hhc--CC-ChHHHHHHHHHHhh-------cCCCCCCH----
Q 010057 12 LKYSTWDSAQDLLKNLPI---KWDSYTVNQV--------LKT--HP-PMEKAWLFFNWVSR-------SRGFNHDR---- 66 (519)
Q Consensus 12 ~~~~~~~~a~~~~~~~~~---~p~~~~~~~l--------l~~--~~-~~~~A~~~~~~~~~-------~~~~~~~~---- 66 (519)
.+.|+.+.|..++.+... ..++.....+ ... .+ +++.|...+++... .....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 578899999999998821 1222222222 111 25 66666655544321 12234444
Q ss_pred -HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 67 -FTYTTMLDIFGEAKRIS---SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 67 -~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
.++..++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|...- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 45677778887777654 556666666554222 35566666777777899999999999998762 2134555555
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH-HHH--HcC------CHHHHHHHHHHHHHc-CCCCCHH
Q 010057 143 MKIL---FLNDRVKEATDVYKEMIQRGLPPNCY-TYT-VLME-YLV--RAG------KYEEALEIFSKMQEA-GVQPDKA 207 (519)
Q Consensus 143 i~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~-~li~-~~~--~~~------~~~~a~~~~~~m~~~-g~~p~~~ 207 (519)
+..+ ... ....|...+..+....+.|... ... .++. .+. +.+ ..+...++++.+.+. +.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5554 333 3456667777766655555553 111 1111 111 111 144555555544332 3334444
Q ss_pred HHHHH---H----HHHHhcCChHHHHHHHHHH
Q 010057 208 ACNIL---I----EKCCKAGETRTIILILRYM 232 (519)
Q Consensus 208 ~~~~l---i----~~~~~~g~~~~a~~~~~~~ 232 (519)
+-.++ + ..+.+.++++.|.+.|+-.
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 43333 2 3456789999999988754
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=5.1 Score=35.39 Aligned_cols=102 Identities=9% Similarity=0.088 Sum_probs=57.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 010057 131 ECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR---GLPP--NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD 205 (519)
Q Consensus 131 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 205 (519)
|......+...++..-....+++.+...+-.+... -..| +.+++..++. .-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 44445555555555555566666666666555532 0111 1222222222 2255566666666666677777
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 206 KAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
..+++.+|+.+.+.+++..|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777766666555443
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.89 E-value=0.62 Score=25.50 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46888999999999999999999998876
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.33 E-value=5.2 Score=28.69 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+..+-++.+....+.|++.+..+.+++|-|.+++..|.++|+-.+.+. .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666666667777777777777777777777777777777776541 122225665553
No 291
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.16 E-value=6.6 Score=29.68 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=49.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCChhhHHHH---HHHHHhcC
Q 010057 75 IFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK-ECYPTIVSYTAY---MKILFLND 150 (519)
Q Consensus 75 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l---i~~~~~~~ 150 (519)
+++..|+.+.|.+.|.+....-.+ +...||.-..++--.|+.++|++=+++..+. |-+ +...+.+. ...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 345566777777776666554222 5566666666666667777776666665554 222 22222222 22344556
Q ss_pred CHHHHHHHHHHHHHCC
Q 010057 151 RVKEATDVYKEMIQRG 166 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g 166 (519)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666665555443
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.11 E-value=2.5 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
++.+-++.+......|++.+..+.+++|-+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555556666666666666666666666666666555
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=90.10 E-value=17 Score=34.39 Aligned_cols=117 Identities=11% Similarity=0.132 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRF-TYTTMLDIFGE---------AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
..+.|..+|.+........|+-. .|..+-..+.. .....+|.++.+...+.+.. |......+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45678888888764455566533 33333322221 12334556666666665543 666666666666667
Q ss_pred CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
++++.|...|++.... .|| ..+|........-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777777777777665 333 34555555555667777777777777555
No 294
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.04 E-value=0.32 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
|..+...|...|++++|...|++..++.|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444555555555555555555555444
No 295
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.97 E-value=16 Score=33.65 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHH-hcCCCcchHHHHhhhC
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRL-GSARRPVPAAKIFSLL 421 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 421 (519)
.....+..+-...|++..|..--+...+. .|....|..|.+.- ...|+-.++...+.+.
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 34445555555566666555444444433 35555555554442 2336666666555544
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.95 E-value=0.83 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.|..+...|.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999998876
No 297
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.43 E-value=7.7 Score=29.36 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHHc
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR-GLPPNCY---TYTVLMEYLVRA 184 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~---~~~~li~~~~~~ 184 (519)
-+.+..|+++.|++.|.+....- +-....||.=..++--.|+.++|++=+++..+. |-+ +.. .|..=...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35678899999999999987763 337788999999999999999999999988874 322 332 233334456677
Q ss_pred CCHHHHHHHHHHHHHcC
Q 010057 185 GKYEEALEIFSKMQEAG 201 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g 201 (519)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888776655
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.39 E-value=1.2 Score=36.23 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHhcCCcchHHHHHHHHHhc
Q 010057 369 ILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~ 389 (519)
-+...|++++|..-|...+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh
Confidence 355667777777777777654
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=27 Score=35.34 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
-..|...|...++++.|..++-..++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 34478888888888888888776655
No 300
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=89.11 E-value=18 Score=33.16 Aligned_cols=109 Identities=8% Similarity=-0.057 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010057 117 VDGAVNIWEEMKLKEC----YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 192 (519)
.+.|.+.|++....+. ..+......++....+.|+.+....+++.... .++..-...++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5567777777766421 33445556666777777776665555555554 3467777888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 010057 193 IFSKMQEAG-VQPDKAACNILIEKCCKAGET--RTIILILR 230 (519)
Q Consensus 193 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~ 230 (519)
+++.....+ +++.. . ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888887754 44332 3 3334444433333 55555544
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.08 E-value=24 Score=35.25 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC--
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDI-FGEAKRISSMKYVFELMQE-------KGINIDAVTYTSVMHWLSNAG-- 115 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-- 115 (519)
...|..+++.......+.+-...=...... +....|.+.|...|....+ .| .....+-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567888888775432222222222222223 4466789999999998877 54 3335666777777643
Q ss_pred ---ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHH
Q 010057 116 ---DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL-NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV--RAGKYEE 189 (519)
Q Consensus 116 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~ 189 (519)
+.+.|..++...-..|. |+....-..+.-... ..+...|.++|...-..|.. +..-+..++-... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 56679999988887763 344433333332222 35678999999999988743 2222222222111 2347889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 190 ALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 190 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
|..++....+.| .|...--...+..+.. +.++.+.-.+..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 999999988887 3333333334444544 7777777777777666544
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.30 E-value=31 Score=34.95 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=43.9
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh-cCC-----------HHHHHHHHHHHHHCC-----CC-CCcc
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS-AGS-----------ADKALKIYKTMCRKG-----IH-PSLG 464 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~g~-----------~~~A~~~~~~m~~~g-----~~-p~~~ 464 (519)
.-+...|++++|..+|..+.+...-....|.++.-... ... ...|..+.+.....+ +. .+..
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~ 501 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRE 501 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHH
Confidence 34667788888888888776531112233333332222 222 233444444333221 11 1234
Q ss_pred cHHHHHHH-----HHhcCChhHHHHHHHHhc
Q 010057 465 TFNVLLAG-----LEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 465 t~~~l~~~-----~~~~g~~~~a~~~~~~~~ 490 (519)
|+..|+.. +.+.|++++|.+.++++.
T Consensus 502 t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 502 TFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 55555542 367889999999888764
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.27 E-value=0.42 Score=37.59 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCH
Q 010057 365 ALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSA 444 (519)
Q Consensus 365 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 444 (519)
.++..+.+.+.+.....+++.+.+.+...+....+.++..|++.+..++..++++.... .-...++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcchH
Confidence 35666777888888999999999877667788999999999999988999999984433 2224555666666666
Q ss_pred HHHHHHHHHH
Q 010057 445 DKALKIYKTM 454 (519)
Q Consensus 445 ~~A~~~~~~m 454 (519)
++|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.77 E-value=17 Score=31.40 Aligned_cols=206 Identities=10% Similarity=0.071 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHhccCChhhHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHhcC
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLD---SAVISTIIEVNCDHRRRDGALLAFEYSVKM-----DLNLERTAYLALIGILIKLN 374 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 374 (519)
....++|..-|+...+....-. ......+|..+.+.+++++.++.|.++... .-.-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456777777777665432222 334556788889999999999999888653 11234566788888777777
Q ss_pred CcchHHHHHHHHHh----c-CCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-----C-CC-------chhHHHHHH
Q 010057 375 TFPKVAEIVEEMTK----A-GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-----Q-KC-------TATYTALIG 436 (519)
Q Consensus 375 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~-------~~~~~~li~ 436 (519)
+.+...++|+.-++ . +-..-..+-.-|...|...|.+.+..+++.++..+ + .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 77766666554332 1 11112223345666777778888888887765432 1 11 346888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHH-----HHhcCChhHH-HHHHHHhcccCcccccccccchHHHHh
Q 010057 437 VYFSAGSADKALKIYKTMCRKG-IHPSLGTFNVLLAG-----LEKLGRVSDA-EIYRKEKKSIQADALSKDAVPMEEKIC 509 (519)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l~~~-----~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 509 (519)
.|..+++-.+-..+|++...-. ..|-+.... +++- ..+.|.+++| ..+|+..+..+..+.+....++..++.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 9998888888788888776532 234444433 3333 4567888877 456666666655565555555555443
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.74 E-value=1.3 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998765
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.67 E-value=7.3 Score=27.65 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+.+-++.+....+.|++....+-+++|-+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.01 E-value=13 Score=30.87 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA---GVQPDKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 226 (519)
+.|.+.|-++...+.--++..-..|...|. ..+.+++..++-...+. +-.+|+..+.+|...+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555444434444444444443 45566666666555432 22455666666666666666666553
No 308
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.97 E-value=1.5 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 435 IGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
+..| ..++.++|+..|+...+.-..|. ..++..++.+|+..|++.++..+--.-.++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56677889999988877632222 347778888899999998887766443333
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.93 E-value=1.2 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+..+|.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555666666666666666654
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.80 E-value=2.6 Score=39.33 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=53.0
Q ss_pred hcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 010057 406 GSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
...|.++.+...+...... .....+...+++...+.|++++|..+-+.|....+. |+.............|-++++..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 3455555555555443332 223445666777777777888888877777766543 33333333444456677788888
Q ss_pred HHHHhcccCc
Q 010057 485 YRKEKKSIQA 494 (519)
Q Consensus 485 ~~~~~~~~~~ 494 (519)
+|++...+.|
T Consensus 413 ~wk~~~~~~~ 422 (831)
T PRK15180 413 YWKRVLLLNP 422 (831)
T ss_pred HHHHHhccCC
Confidence 8877766655
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.63 E-value=1.5 Score=38.99 Aligned_cols=48 Identities=4% Similarity=-0.094 Sum_probs=26.5
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
+-|.++|.+++|+..|...+... +.++.++..-..+|.+..++..|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 44556666666666666555432 2255555555555666555554443
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.44 E-value=22 Score=31.32 Aligned_cols=139 Identities=10% Similarity=0.152 Sum_probs=95.2
Q ss_pred cCChhhHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 010057 114 AGDVDGAVNIWEEMKL-KECYPTIVSYTAYMKILFLNDR--VKEATDVYKEMIQ-RGLPPNCYTYTVLMEYLVRAGKYEE 189 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~ 189 (519)
+..+.+|+.+|+.... ..+--|..+...+++......+ ...--++.+-+.. .|-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777773322 2344577777778777766222 2222222222332 3467889999999999999999999
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHHcCCccCHHHHHHHHHHHh
Q 010057 190 ALEIFSKMQEA-GVQPDKAACNILIEKCCKAGETRTIILILRY-----MKENRLALRYPVFKEALQTFK 252 (519)
Q Consensus 190 a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 252 (519)
-.++++..... +..-|...|..+|+.-...||..-..++..+ +++.++..+...-..+-+.+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99999988765 6667888999999999999999988888775 445566665554444444443
No 313
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.12 E-value=27 Score=31.86 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=71.0
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh----cCCCccch----
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMD-----LNLERTAYLALIGILIKLNTFPKVAEIVEEMTK----AGHSLGVY---- 396 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~---- 396 (519)
++-.++...+.++++++.|+...+.- .......+..+-..|.+..|+++|.-+.....+ .++..-..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 45566666678888888888776541 112234577888888888999888776666543 22111111
Q ss_pred -hHHHHHHHHhcCCCcchHHHHhhhCCcC---CCCch----hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 397 -LGALLIHRLGSARRPVPAAKIFSLLPED---QKCTA----TYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 397 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
..-.+.-++...|++-+|.+.-++..+. ..|.. ..-.+.+.|...|+.+.|+.-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1122333455666666666655543322 12222 23445556666677776666665543
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.00 E-value=16 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=25.3
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 112 SNAGDVDGAVNIWEEMKLKECYPTIVSYTA-YMKILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~ 165 (519)
.+.++.+.+..+++.+.-. .|....... -...+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666655543 333222211 122244556666666666665543
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.84 E-value=0.73 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=15.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHH
Q 010057 426 KCTATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~ 448 (519)
.|+.+|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34666677777777777766664
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.79 E-value=14 Score=30.57 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=59.2
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCH
Q 010057 111 LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR---GLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~ 187 (519)
..+.|+ +.|.+.|-++...+.--+......|..-|. ..+.+++.+++....+. +-.+|+..+..|.+.+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 778888888887765545555555555554 77899999999888762 3477899999999999999999
Q ss_pred HHHH
Q 010057 188 EEAL 191 (519)
Q Consensus 188 ~~a~ 191 (519)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
No 317
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.37 E-value=16 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 135 TIVSYTAYMKILFLNDR-VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
+..+|++++.+.+.... ---+..+|.-|++.+.+++..-|..+|+++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44455555555544444 233445555555555566666666666655544
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.31 E-value=0.87 Score=25.10 Aligned_cols=31 Identities=6% Similarity=-0.196 Sum_probs=21.5
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHH
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAA 415 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (519)
++.++.. +.+...+..+...|...|+.++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 456777888888888888888775
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.97 E-value=12 Score=26.90 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.71 E-value=22 Score=29.77 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
|-..|-+.-|.-=|.+... +.|+ +..||-|.-.+...|+++.|.+.|+...+....-+-...|--|. +.-.|+++.
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 4444555555544555444 3444 34566666666666666666666666665422212112222221 223456665
Q ss_pred HHHHHHHH
Q 010057 225 IILILRYM 232 (519)
Q Consensus 225 a~~~~~~~ 232 (519)
|.+=+...
T Consensus 152 Aq~d~~~f 159 (297)
T COG4785 152 AQDDLLAF 159 (297)
T ss_pred hHHHHHHH
Confidence 55544433
No 321
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.27 E-value=33 Score=31.32 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=31.7
Q ss_pred HHhccCChhhHHHHHHHHHh----CCCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 334 VNCDHRRRDGALLAFEYSVK----MDLNLE-RTAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
++-..|....|.+.-++..+ .|-++. ......+.+.|...|+.+.|..-|+...
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 45556666666666665543 343222 1224556667777788887776666654
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.25 E-value=41 Score=32.36 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..|.....+++..+..+..+.-++.+..+|..-|- +...|-.++..|..+ ..+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34555667777777777778888888888877642 566777788888777 556667777777666442 33333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPP-----NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-GVQPDKAACNILIEKC 216 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 216 (519)
..-|-+ ++.+.+..+|......=++. =...|..|... -..+.+....+...+... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 433333 66666666666554431110 01133333321 123444444444444322 3333333444444455
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010057 217 CKAGETRTIILILRYMKE 234 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~ 234 (519)
....++.+|.+++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 555555555555554333
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.67 E-value=3.3 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
+|..+...|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778888999999999999999988765
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.62 E-value=6.3 Score=32.89 Aligned_cols=55 Identities=16% Similarity=0.005 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPE-DQKCTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
..+..+.+.+.+.+|+...+.-.+ ++.|...-..++..|+-.|+|++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334455555666666666543333 3334555566666666666666665554443
No 325
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.56 E-value=47 Score=32.57 Aligned_cols=410 Identities=11% Similarity=0.044 Sum_probs=213.6
Q ss_pred CHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010057 32 DSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRF-TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSV 107 (519)
Q Consensus 32 ~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 107 (519)
+-..|..++... .+.+.+..+++.+..+ -|... -|......=.+.|..+.+.++|++-.. |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 444566666654 3456677777777633 45544 355555555778999999999999886 466677788777
Q ss_pred HHHHH-hcCChhhHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-
Q 010057 108 MHWLS-NAGDVDGAVNIWEEMKLK-ECY-PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR- 183 (519)
Q Consensus 108 i~~~~-~~g~~~~a~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 183 (519)
+..+. ..|+.+...+.|+..... |.. .+..-|...|.--...+++.....+|+..++. | ...|+....-|.+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHH
Confidence 66554 457788888888887765 322 24556888888888899999999999999874 2 2233333332221
Q ss_pred --c------CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 010057 184 --A------GKYEEALEIFSKMQEA----GVQPDKAACNILIEKCCK-AGETRTIILILRYMKENRLALRYPVFKEALQT 250 (519)
Q Consensus 184 --~------~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (519)
. ...+++.++-...... ...+.......-+.--.. .+..+.+.....+... .....+.
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~----~~~~~~~----- 266 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS----IHEKVYQ----- 266 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH----HHHHHHH-----
Confidence 1 1233333332222210 000111111111110000 0111111111110000 0000000
Q ss_pred HhhcCchhHHHhhhCCCC-----CcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH
Q 010057 251 FKVADENDSLLWQVHPQF-----SPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDS 325 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (519)
.........+.....+ ........+. ..+..-+....+.|+.+.+.-++++..-.--.-+.
T Consensus 267 --~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql------------~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e 332 (577)
T KOG1258|consen 267 --KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL------------KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE 332 (577)
T ss_pred --hhHhHHHHHHhhhhhccccccccCcccHHHH------------HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH
Confidence 0000000000000000 0000011111 12233444556677777777777765421111111
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKMDLN--LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
.|--.+.-....|+.+-|..++....+-.++ |....+.+.+ +-..|+++.|..+++.+...- +.-...-..-+.
T Consensus 333 -fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~ 408 (577)
T KOG1258|consen 333 -FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY-PGLVEVVLRKIN 408 (577)
T ss_pred -HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHh
Confidence 1222222223337778887777766654433 3333333333 344589999999999998764 222223333455
Q ss_pred HHhcCCCcchHH---HHhhhCCcCCCCchhHHHHHHHHH-----hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 010057 404 RLGSARRPVPAA---KIFSLLPEDQKCTATYTALIGVYF-----SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK 475 (519)
Q Consensus 404 ~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 475 (519)
...+.|+.+.+. +++........+....+.+.--+. -.++.+.|..++.+|.+. ++++...|..++.-+..
T Consensus 409 ~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 409 WERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 567788888887 555555444333344333333332 357899999999999877 46667777777777655
Q ss_pred cC
Q 010057 476 LG 477 (519)
Q Consensus 476 ~g 477 (519)
.+
T Consensus 488 ~~ 489 (577)
T KOG1258|consen 488 QP 489 (577)
T ss_pred CC
Confidence 55
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.44 E-value=12 Score=31.40 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
++.+.+.+.+.+++...++-.+.. +-|..+-..++..++-.|+|++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 334444444444444444433321 11333334444444444444444444333
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.61 E-value=60 Score=33.06 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=51.6
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC-CCCCC---HHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL-PIKWD---SYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~---~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
+..++|.=+++.+.+++|+.+-+.. |..|. ...+...+..+ |+++.|-...-.|. .-+..-|.--+..
T Consensus 358 ~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----gn~~~eWe~~V~~ 432 (846)
T KOG2066|consen 358 DQEDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-----GNNAAEWELWVFK 432 (846)
T ss_pred CcchhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-----cchHHHHHHHHHH
Confidence 3445566666677777777777765 44331 22233333322 55666555555553 3344455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
+...++......+ ++......+...|..++..+..
T Consensus 433 f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 433 FAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 5555444433322 3333223345566666655554
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.57 E-value=2.5 Score=21.49 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 010057 433 ALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~ 451 (519)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.27 E-value=1.4 Score=23.63 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 467 NVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 467 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
-.+..++.+.|++++|.+.++++.+..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34567788899999999999999887775
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.21 E-value=35 Score=30.13 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+++..-..|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.|..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556678899999999999999998875 66788888899999999997777777766643
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.17 E-value=49 Score=31.82 Aligned_cols=185 Identities=12% Similarity=0.061 Sum_probs=115.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
..|....-+++..+..+..+.-++.+..+|+..| -+...|..++.+|... ..++-..+++++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3466677888899999888988999999999864 4778899999999888 777888888888876443 44444555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccC-HHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALR-YPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLS 291 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (519)
..-|-+ ++.+.+..+|..+..+-++-. ......+
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ev-------------------------------------------- 173 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEV-------------------------------------------- 173 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHH--------------------------------------------
Confidence 555544 888888888887766433210 0000000
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMD-KSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL 370 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (519)
|..+.. .-..+.+....+...+.. .|...-...+..+-.-|....++++|++++..+.+.. .-|...-..++.-+
T Consensus 174 -WeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 174 -WEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred -HHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 000000 001233333444444432 2334445556666677888889999999998888765 23444444444433
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.85 E-value=23 Score=27.73 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=8.1
Q ss_pred HhcCChhhHHHHHHHHHH
Q 010057 112 SNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~ 129 (519)
...|++++|.++|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344444444444444443
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.35 E-value=4.2 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=13.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 010057 212 LIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.95 E-value=20 Score=35.01 Aligned_cols=99 Identities=16% Similarity=0.057 Sum_probs=50.7
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHH
Confidence 445555555444433 2334455566666666666666666655543 445555555555554444444
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 452 KTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 452 ~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
....+.| ..|...-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444443 1233334555556666665555443
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.92 E-value=39 Score=29.85 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 177 LMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 177 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
..+.|..+|.+.+|.++.+...... +.+...+-.|+..++..||--.+.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445555555555555555554431 234445555555555555544444444433
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.05 E-value=37 Score=28.97 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcccHH---HHHH-HHHh--cCChhHHHHHHHHhcccCccccccccc
Q 010057 438 YFSAGSADKALKIYKTMCRKGIHPSLGTFN---VLLA-GLEK--LGRVSDAEIYRKEKKSIQADALSKDAV 502 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~l~~-~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~ 502 (519)
-+..+++.+|+.+|++.....+..+..-|. .++. ++++ ..+.-.+...+++.+++.|........
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 345688999999999887664332222221 1222 2222 256667788888888888876665443
No 337
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=79.99 E-value=35 Score=28.76 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=50.1
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 448 (519)
+...++.+.+...+....+.........+..+...+...+..+.|...+.......|+ ...+..+...+...+..+.+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 4455566666666666555431113444555555566666666666666665554333 334444444444666778888
Q ss_pred HHHHHHHHC
Q 010057 449 KIYKTMCRK 457 (519)
Q Consensus 449 ~~~~~m~~~ 457 (519)
..+.+....
T Consensus 257 ~~~~~~~~~ 265 (291)
T COG0457 257 EALEKALEL 265 (291)
T ss_pred HHHHHHHHh
Confidence 888777766
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.97 E-value=1.3e+02 Score=35.30 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEM----KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
.+..+-.+++.+.+|...++.- .+. .-...-|..+...|+.-++++....+...-.. +...+. -|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 3445667888899999888883 222 11233445555589999999988888775222 222333 34455
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPD-KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
...|++..|...|+.+.+.+ |+ ..+++-++..-...|.++.+....+....
T Consensus 1460 e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 67899999999999998753 44 55777777766677888777765554433
No 339
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.91 E-value=42 Score=29.53 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=78.0
Q ss_pred hccCChhhHHHHHHHHHhCCCCcCHH-------HHHHHHHHHHhcCCcchHHHHHHHHH----hcCCCccchhHHHHHHH
Q 010057 336 CDHRRRDGALLAFEYSVKMDLNLERT-------AYLALIGILIKLNTFPKVAEIVEEMT----KAGHSLGVYLGALLIHR 404 (519)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~ 404 (519)
.+.+++++|+..|.++...|+..+.. +...+...|...|+.....+...... ...-+....+...|+..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 34445555555555555555444332 23445556666666555444433322 21112334445555555
Q ss_pred HhcCC-CcchHHHHhhhCCcC----CC---CchhHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCcccHHHHH-H
Q 010057 405 LGSAR-RPVPAAKIFSLLPED----QK---CTATYTALIGVYFSAGSADKALKIYK----TMCRKGIHPSLGTFNVLL-A 471 (519)
Q Consensus 405 ~~~~g-~~~~A~~~~~~~~~~----~~---~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~l~-~ 471 (519)
+.... .+++..++.....+- +. ....=..++..+.+.|++.+|+.+.. ++++.+-+|+..+...+= .
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESK 173 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESK 173 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHH
Confidence 44332 244444444332221 00 01223568889999999999998655 445555567766655443 3
Q ss_pred HHHhcCChhHHHHHHH
Q 010057 472 GLEKLGRVSDAEIYRK 487 (519)
Q Consensus 472 ~~~~~g~~~~a~~~~~ 487 (519)
+|.......++..-+.
T Consensus 174 vyh~irnv~KskaSLT 189 (421)
T COG5159 174 VYHEIRNVSKSKASLT 189 (421)
T ss_pred HHHHHHhhhhhhhHHH
Confidence 5655555555554443
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.87 E-value=2.7 Score=21.82 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
|..+...+...|++++|...|++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555555555555444
No 341
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.33 E-value=50 Score=29.51 Aligned_cols=161 Identities=9% Similarity=0.072 Sum_probs=94.0
Q ss_pred CCChHHHHHHHHHHhhcC-CCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCH-----H
Q 010057 43 HPPMEKAWLFFNWVSRSR-GFNHDRF------TYTTMLDIFGEAKRISSMKYVFELMQEK--------GINIDA-----V 102 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~-~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~-----~ 102 (519)
.|+.+.|..++.+..... ...|+.. .|+.-...+.+..+++.|...+++..+. ...|+. .
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 378899999998875333 3344432 2444444443332777776655543321 223332 4
Q ss_pred HHHHHHHHHHhcCChh---hHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVD---GAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
++..++.+|...+..+ +|..+++.+... .|+ ..++-.-+..+.+.++.+++.+.+.+|... +.-....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 5677778888777755 455566666444 233 455556677777789999999999999986 222344555555
Q ss_pred HHHHHc--CCHHHHHHHHHHHHHcCCCCCH
Q 010057 179 EYLVRA--GKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 179 ~~~~~~--~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
+.+-.. .....+...++.+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 554222 2345566666666554444444
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.27 E-value=4.9 Score=23.78 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
-|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35678888888888888888888654
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.12 E-value=84 Score=32.01 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=115.8
Q ss_pred CHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHH-----H
Q 010057 32 DSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDR--FTYTTMLDIFG-EAKRISSMKYVFELMQEKGINIDAV-----T 103 (519)
Q Consensus 32 ~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~ 103 (519)
+...|..+| ..|+..++.+.+...++|.. .++-.+...+. ...+++.|+..+++.....-.++.. .
T Consensus 29 ~l~~Y~kLI------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 29 QLKQYYKLI------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hHHHHHHHH------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 344555554 56777777776555555543 34555555555 6789999999998765432222222 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYPTIVSYTAY-MKILFLNDRVKEATDVYKEMIQRG---LPPNCYTYT 175 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~ 175 (519)
-..++..+.+.+... |...+++..+. +..+=...|..+ +..+...++...|.+.++.+...- ..|-..++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 334567777777666 88888886554 111222333343 333334489999999998887631 233344444
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHHHHcC--C-------CCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 010057 176 VLMEYLV--RAGKYEEALEIFSKMQEAG--V-------QPDKAACNILIEKCC--KAGETRTIILILRYMKE 234 (519)
Q Consensus 176 ~li~~~~--~~~~~~~a~~~~~~m~~~g--~-------~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~ 234 (519)
.++.+.. +.+..+++.+..+.+.... + .|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555444 3455677777777764321 1 345567777776655 45777777777766654
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.03 E-value=9.5 Score=29.11 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 430 TYTALIGVYFSAG---SADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 430 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+--.+.+++.+.. +..+.+.++++..+.+ .|+ ......+.-++.+.++++++.++.+...+.+|+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3344455555443 3344566666666522 222 233344445666777777777777776666554
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.90 E-value=3.2 Score=25.74 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 468 VLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 468 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+.-++.+.|++++|.++.+.+.+++|+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 34557788888888888888888887763
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.41 E-value=44 Score=29.38 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQR--GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK- 218 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 218 (519)
=|.+++..+++.+++...-+.-+. .++| .....-|-.|.+.+++..+.++-..-...--.-+...|.++...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356677777777766554433321 2233 23334444567777777777776666543222233346666555544
Q ss_pred ----cCChHHHHHHH
Q 010057 219 ----AGETRTIILIL 229 (519)
Q Consensus 219 ----~g~~~~a~~~~ 229 (519)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 47777777766
No 347
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.23 E-value=3.4 Score=31.30 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 441 AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 441 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
-|.-.+|..+|++|.+.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3455668999999999998888 677777654
No 348
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.01 E-value=87 Score=30.18 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=73.5
Q ss_pred HHHHHHhcCCCccch-hHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 010057 382 IVEEMTKAGHSLGVY-LGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFS--AGSADKALKIYKTMCRK 457 (519)
Q Consensus 382 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 457 (519)
++....+.+ .++.. .-+.+++-+...|-.++|..++..+... +++...|..+|..-.. .-+..-+.++|+.|...
T Consensus 447 Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 447 IISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 333334443 34433 3456777778888899999999888776 4567788888775322 22367788889888754
Q ss_pred -CCCCCcccHHHHHHHHHhcCChhHHHHHHHH-hcccCcc
Q 010057 458 -GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE-KKSIQAD 495 (519)
Q Consensus 458 -g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~ 495 (519)
| .|+..|--.+.-=...|..+.+-.++.+ ++-++|.
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 6 6777787777666788888887555543 4444443
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.44 E-value=27 Score=26.35 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+..+-++.+..-.+.|++.+...-+++|-+.+|+..|.++|+-.+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566677777778888888888888888888888888888887654
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.27 E-value=64 Score=28.42 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=10.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010057 144 KILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~ 164 (519)
-.|.+.+.+..+.++-...+.
T Consensus 126 LLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 344455555555554444443
No 351
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=73.24 E-value=57 Score=27.71 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 010057 60 RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINI---DAVTYT--SVMHWLSNAGDVDGAVNIWEEMKLKECYP 134 (519)
Q Consensus 60 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p 134 (519)
..+.+...-+|.|+--|.-...+.+|...|. .+.|+.| +..+++ .-|+.....|+.+.|++..+++...-+.-
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Confidence 3445666666666666666666666666553 3344444 223322 24555567777777777766664332222
Q ss_pred ChhhHHHHHH----HHHhcCCHHHHHHHHHH
Q 010057 135 TIVSYTAYMK----ILFLNDRVKEATDVYKE 161 (519)
Q Consensus 135 ~~~~~~~li~----~~~~~~~~~~a~~~~~~ 161 (519)
|...+-.|.. -..+.|..++|+++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3222222221 13345555555555544
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.18 E-value=1.1e+02 Score=30.81 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHc
Q 010057 117 VDGAVNIWEEMKLKECYPTIVSYTAYMK----I-LFLNDRVKEATDVYKEMIQ-------RGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~~~~~~~li~----~-~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 184 (519)
...|.+.++.....| +...-..+.. + +....+++.|+..|+...+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345677777766665 3332222222 2 4456677888888777765 43 223444555555553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCC
Q 010057 185 G-----KYEEALEIFSKMQEAGVQPDKAACNILIEKCCK-AGETRTIILILRYMKENRL 237 (519)
Q Consensus 185 ~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~ 237 (519)
. +.+.|..++...-+.|. |+...+...+..... ..+...|.++|...-+.|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 2 45667777776666653 344333333222222 2345566666666655553
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.87 E-value=53 Score=27.18 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=67.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCc--cchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCC
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSL--GVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGS 443 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 443 (519)
+...+...+++++|...++........- ....--.|.......|.+++|...++...+..-.......-.+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 3456678899999999988877532111 11122234455677899999999999887753334445566788999999
Q ss_pred HHHHHHHHHHHHHCC
Q 010057 444 ADKALKIYKTMCRKG 458 (519)
Q Consensus 444 ~~~A~~~~~~m~~~g 458 (519)
.++|..-|++..+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999999885
No 354
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.70 E-value=20 Score=29.64 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=54.2
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCc----CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNL----ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
-+.++|++++|..-|...++.-... ....|..-..++.+.+.++.|+.-....++.+. ......-.-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh
Confidence 3567899999999998887653211 123355556677788888888777777776551 11112222233455555
Q ss_pred CcchHHHHhhhCCcCCC
Q 010057 410 RPVPAAKIFSLLPEDQK 426 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~ 426 (519)
++++|++-+..+.+..|
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 55555555555554433
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.97 E-value=20 Score=21.65 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=19.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMH 109 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 109 (519)
.+.|-..++..+++.|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666666555544
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.97 E-value=54 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
++|.+.|+...+ ..|+..+|+.-+..+. +|-++..++.+.+
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 344444444443 3566667766666663 2444555555544
No 357
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=70.87 E-value=76 Score=34.10 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=20.5
Q ss_pred hhhhHHhhhccCChhHHHHHHHhCCCC
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNLPIK 30 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~~~~ 30 (519)
++..|..++..++|.+|..+.++..+.
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~RkhRId 723 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRKHRID 723 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccc
Confidence 456777888888888888888877433
No 358
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.63 E-value=31 Score=26.30 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 010057 446 KALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 446 ~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
.+.++|+.|..+|+--. +.-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78889999988876655 44566666777888999999988875
No 359
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.70 E-value=8.8 Score=24.80 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 445 DKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 445 ~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
+...++++.+... +-|..-.-.++.++...|++++|.++++++
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444433 334444445556666666666666666544
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.61 E-value=2.5e+02 Score=33.26 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=97.2
Q ss_pred HHHHHHHhcCChhHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010057 71 TMLDIFGEAKRISSMKYVFEL----MQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 146 (519)
.+..+-.+++.+.+|...++. .++.. ....-|..+...|+.-+++|...-+...-.. +. ....-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHH
Confidence 344455677888999988888 33331 1234455556699999999998887774111 12 233444566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChHH
Q 010057 147 FLNDRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL-IEKCCKAGETRT 224 (519)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~ 224 (519)
...|++..|...|+.+.+. .|+ ..+++-++......|.++.++...+-.... ..+....++++ +.+-=+.++++.
T Consensus 1460 e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 7889999999999999986 344 667887887777888888887766655543 22333333332 333456677777
Q ss_pred HHHHHH
Q 010057 225 IILILR 230 (519)
Q Consensus 225 a~~~~~ 230 (519)
......
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 766655
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.25 E-value=17 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 460 HPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 460 ~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 67777777777777777777777777777766666
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.08 E-value=53 Score=24.86 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.+-++.+....+.|++.....-+++|-+.+|+..|..+|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555543
No 363
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.48 E-value=1e+02 Score=27.91 Aligned_cols=85 Identities=9% Similarity=-0.053 Sum_probs=35.7
Q ss_pred HHHHhcCCCcchHHHHhhhCCcC------CCCchhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH-H-
Q 010057 402 IHRLGSARRPVPAAKIFSLLPED------QKCTATYTA-LIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLA-G- 472 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~-~- 472 (519)
..-|++-|+.+.|.+.+++.-+. +-|+..+.. |.-.|..+.-..+-++..+.+.+.|-..+...---... .
T Consensus 111 aeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly 190 (393)
T KOG0687|consen 111 AEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY 190 (393)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH
Confidence 33455555555555555433222 122322222 22233344444455555555666665444322111111 1
Q ss_pred HHhcCChhHHHHHH
Q 010057 473 LEKLGRVSDAEIYR 486 (519)
Q Consensus 473 ~~~~g~~~~a~~~~ 486 (519)
|....++.+|-.+|
T Consensus 191 ~msvR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 191 CMSVRNFKEAADLF 204 (393)
T ss_pred HHHHHhHHHHHHHH
Confidence 13334556665555
No 364
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.18 E-value=19 Score=32.36 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=32.6
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
-|.+.|.+++|+..|....... +.|++++..-..+|.+...+..|+.-....+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4666777777777776554332 22666666666677777666666555444443
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.17 E-value=26 Score=23.88 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=30.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHhcCChHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQEAGVQP-DK-AACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~a~~~ 228 (519)
..++.++|+..+....+.-..| +. .++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888887776652222 22 2667778888888888777665
No 366
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.06 E-value=27 Score=21.11 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
.|-.+++..+++.|.+.|+..+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 33333444444444444444444444333
No 367
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.03 E-value=43 Score=23.42 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 86 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
.++++.+.+.|+- +......+..+-...|+.+.|.+++..+. + ....|...+.++-..|.-+
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchh
Confidence 3455555555532 33333333333234455555555555555 3 2334555555555544433
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.98 E-value=4.4 Score=26.19 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
-.-.+|.+|.+.|++++|.++++++..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344678899999999999998888764
No 369
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.81 E-value=54 Score=25.75 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=10.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHC
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
++..+...++.-.|.++++++.+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 333334443334444444444443
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.54 E-value=1.9e+02 Score=30.67 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred hhhHHhhhccCChhHHHHHHHhCCCCCCHHHHH-----HHHh------cCCChHHHHHHHHHHh
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNLPIKWDSYTVN-----QVLK------THPPMEKAWLFFNWVS 57 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~~~~p~~~~~~-----~ll~------~~~~~~~A~~~~~~~~ 57 (519)
-.+|..+++..++++|..+-+... .|++...- ..+. ..+++++|.+.|..+.
T Consensus 311 ~~qi~~lL~~k~fe~ai~L~e~~~-~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 311 EKQIQDLLQEKSFEEAISLAEILD-SPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 346677778888888888877552 23432221 1111 1277888888887763
No 371
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.35 E-value=11 Score=37.68 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHH
Q 010057 219 AGETRTIILILRYMKENRLALRYPVFKEAL 248 (519)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 248 (519)
.|++.+|.+.+-.+...+..|.......+.
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp ------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 366777777777777777766655444333
No 372
>PRK12356 glutaminase; Reviewed
Probab=65.10 E-value=1.1e+02 Score=27.80 Aligned_cols=23 Identities=4% Similarity=-0.155 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 010057 208 ACNILIEKCCKAGETRTIILILR 230 (519)
Q Consensus 208 ~~~~li~~~~~~g~~~~a~~~~~ 230 (519)
+...+......+|.++.+-++.-
T Consensus 233 ~~r~v~s~M~TCGmYd~SG~fa~ 255 (319)
T PRK12356 233 NVPYILAEMTMEGLYERSGDWAY 255 (319)
T ss_pred HHHHHHHHHHHcCCccchhhHHH
Confidence 33344444445566666555543
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.96 E-value=66 Score=25.21 Aligned_cols=50 Identities=10% Similarity=0.273 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 170 NCYTYTVLMEYLVRAGK-YEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
+...|..++.+.++..- --.+..+|..+++.+.+++..-|..+|.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44455555555544443 334455555555555555666666666655543
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.68 E-value=1.7e+02 Score=29.96 Aligned_cols=145 Identities=11% Similarity=0.102 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
.|.....+ .+.|++..+.++...+....+ .....|..+..... ....++....+++-. +.+.....-...+..+.
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHH
Confidence 34443333 355667777666666643322 12223333322211 223343333333321 11111222233344455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
+.+++....+.+.. .+.+...-.....+....|+.++|......+-..|.. ....++.++..+.+.|.+.
T Consensus 111 ~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 111 RREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 56666665552211 1234444455666666777766666665555444322 3445666666666655543
No 375
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=64.53 E-value=80 Score=26.04 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=40.9
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.-+++..|.+..++.+...+++.|....+.-+ . +.++... .+..+.-...|.....+.+
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft-----~-LKGL~g~---------------e~~asrCqivn~AaEiFL~ 193 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFT-----S-LKGLTGP---------------EKLASRCQIVNIAAEIFLK 193 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----h-ccCccCc---------------cccCchhhhHHHHHHHHHH
Confidence 34566777777777777777777765433211 1 1111000 0123444556666777777
Q ss_pred cCCcchHHHHHHH
Q 010057 373 LNTFPKVAEIVEE 385 (519)
Q Consensus 373 ~~~~~~a~~~~~~ 385 (519)
.|.++.|..++++
T Consensus 194 sgsidGA~~vLre 206 (233)
T PF14669_consen 194 SGSIDGALWVLRE 206 (233)
T ss_pred cCCchHHHHHHhc
Confidence 7888887777763
No 376
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.11 E-value=1.2e+02 Score=27.99 Aligned_cols=190 Identities=10% Similarity=0.070 Sum_probs=103.1
Q ss_pred HHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhc-CCChHHHHHHHHHHhhcCC--C-CCCHHHHHHHHHHHHhcCCh
Q 010057 8 VYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKT-HPPMEKAWLFFNWVSRSRG--F-NHDRFTYTTMLDIFGEAKRI 82 (519)
Q Consensus 8 i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~A~~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~ 82 (519)
+...-+.|+|+...+..... +..|+...+.++..- .++.+++....+.+..... + ......|......+.+...+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L 84 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQL 84 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHH
Confidence 34566889999977777777 344566677776665 3788887777766532110 0 11122333333333444444
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----cCChhhHHHH---HHHHHH--CCCCCChhhHHHHHHHHHhcCCH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLSN-----AGDVDGAVNI---WEEMKL--KECYPTIVSYTAYMKILFLNDRV 152 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~---~~~m~~--~~~~p~~~~~~~li~~~~~~~~~ 152 (519)
.+..++.+-.....- +......++..... ..+++.-..+ -..+.. ........+|..+...+.+.|.+
T Consensus 85 ~Elee~~~~~~~~~~--~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~ 162 (352)
T PF02259_consen 85 VELEEIIELKSNLSQ--NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF 162 (352)
T ss_pred HHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc
Confidence 444444433322110 11222222222111 1111111111 111111 11233456788889999999999
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 153 KEATDVYKEMIQRGLPP---NCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+.|...+..+...+..+ ++...-.-.+..-..|+..+|+..++....
T Consensus 163 ~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 163 QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999988753221 334444455666778888999998888776
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.51 E-value=44 Score=27.82 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 202 VQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666666666666666666665555544
No 378
>PRK12357 glutaminase; Reviewed
Probab=62.93 E-value=63 Score=29.29 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 010057 21 QDLLKNLPIKWDSYTVNQVL 40 (519)
Q Consensus 21 ~~~~~~~~~~p~~~~~~~ll 40 (519)
..+|++.|..|+-..||+++
T Consensus 90 ~~V~~~VG~EPSG~~FNSi~ 109 (326)
T PRK12357 90 SYVLERVDVEPTGDAFNSII 109 (326)
T ss_pred HHHHHHhCCCCCCCCcchhh
Confidence 55777778888888777774
No 379
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=62.92 E-value=94 Score=26.31 Aligned_cols=182 Identities=9% Similarity=-0.006 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHD-RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
|-++.|.-=|.+.. .+.|+ +..||-+.-.+...|+++.|.+.|+...+....-+-...|.=|..| -.|+++-|.+
T Consensus 79 GL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHH
Confidence 34444444444332 33554 5678888888899999999999999998875443333333333332 4588888887
Q ss_pred HHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 123 IWEEMKLKE-CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 123 ~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
=|...-+.. -.|=...|-.++ -..-++.+|..-+.+--+ ..|..-|...|-.|.- |++. ...+++.++...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 776665552 122222333332 244566666654443222 1254555444433321 1111 122333333211
Q ss_pred C------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010057 202 V------QPDKAACNILIEKCCKAGETRTIILILRYMKENRL 237 (519)
Q Consensus 202 ~------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 237 (519)
- ..=..||--|.+-+...|+.+.|..+|+-....++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 0 01124666778888899999999999998777554
No 380
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.43 E-value=61 Score=32.35 Aligned_cols=73 Identities=7% Similarity=0.075 Sum_probs=43.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChh------hHHHHHHHHHHCCCCCChhhHHHH
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKG--INIDAVTYTSVMHWLSNAGDVD------GAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+|+.+|...|++..+.++++.+...+ -+.-...||..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67777777788877777777776532 2222345666777777777643 3344444433 33366666666
Q ss_pred HHHH
Q 010057 143 MKIL 146 (519)
Q Consensus 143 i~~~ 146 (519)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6543
No 381
>PRK10941 hypothetical protein; Provisional
Probab=61.92 E-value=43 Score=29.64 Aligned_cols=80 Identities=8% Similarity=-0.114 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccchHHHHh
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKIC 509 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~ 509 (519)
..+.+-.+|.+.++++.|+++.+.+.... +.|+.-+.--.-.|.+.|-+..|..-++...+..|+ .|+.......|.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~--dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE--DPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--chhHHHHHHHHH
Confidence 45677788899999999999999998873 344555666666788999999998888888877775 355555555555
Q ss_pred hhh
Q 010057 510 DLL 512 (519)
Q Consensus 510 ~~~ 512 (519)
.+-
T Consensus 260 ~l~ 262 (269)
T PRK10941 260 SIE 262 (269)
T ss_pred HHh
Confidence 443
No 382
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.89 E-value=1.3e+02 Score=27.38 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=49.2
Q ss_pred hcCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 78 EAKRISSMKYVFELMQEKGI----NIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
..+-.+.+.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++......++.+.+...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHH
Confidence 33445666677766665311 345556666666667777655555555555433 25566677777777777777
Q ss_pred HHHHHHHHHHHCC
Q 010057 154 EATDVYKEMIQRG 166 (519)
Q Consensus 154 ~a~~~~~~m~~~g 166 (519)
...++++.....+
T Consensus 219 ~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 219 LLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHcCCc
Confidence 7777777777643
No 383
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.22 E-value=29 Score=30.88 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 010057 210 NILIEKCCKAGETRTIILILRYMKENRLALRYPV 243 (519)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (519)
+..|+...+.||+++|+.++++.++.|+.--..+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3445555555555555555555555554433333
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.14 E-value=1.1e+02 Score=26.26 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
++.++...|+.+.|..+++.......+......++.+ ..++...+|..+-+...+.. ....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 5555555666666666666554322222223333333 44566666666555443321 1335555555554
No 385
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.10 E-value=66 Score=25.29 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=27.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcC
Q 010057 196 KMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVAD 255 (519)
Q Consensus 196 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (519)
.+.+.|++++.. -..+++...+.++.-.|.++++.+.+.++..+..|+-..+..+...+
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444322 23344444445444555555555555555555555444444444433
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.74 E-value=1.3e+02 Score=28.34 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=25.3
Q ss_pred ccCChhhHHHHHHHHHhCCCCcCHH--HHHHHHHHHH--hcCCcchHHHHHHHHHhc
Q 010057 337 DHRRRDGALLAFEYSVKMDLNLERT--AYLALIGILI--KLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 389 (519)
+.+++..|.++|..+... ++++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445566666666655554 333332 2333333332 334455566666655443
No 387
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.71 E-value=77 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
++|.+.|+...+. .|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3444444444442 34444444444443
No 388
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.31 E-value=2.8e+02 Score=30.26 Aligned_cols=136 Identities=12% Similarity=0.126 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc-C--CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHH
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKA-G--HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYF 439 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 439 (519)
|..+++.+-+.+-.+.+.++-...++. + .+.-+.+++.+.+-....|.+-+|.+.+-..+.......+...++-.+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 778888888888888888887777653 1 1223446677888888888888888887766554333456677777777
Q ss_pred hcCCHHHH------------HH-HHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHH-HHHHHHhcccCcccccc
Q 010057 440 SAGSADKA------------LK-IYKTMCRKGIHPSLG-TFNVLLAGLEKLGRVSDA-EIYRKEKKSIQADALSK 499 (519)
Q Consensus 440 ~~g~~~~A------------~~-~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~ 499 (519)
.+|.++.- .. +++..-.. .+.... -|+.|..-+...+++.+| --.|+..-.+..+...+
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~ 1139 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMT 1139 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCC
Confidence 77776542 22 22222222 222233 344444444666777665 44455544444443333
No 389
>PRK09687 putative lyase; Provisional
Probab=58.17 E-value=1.4e+02 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
.+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 34444444443 344444444443 23444444333333
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.10 E-value=2.5e+02 Score=29.55 Aligned_cols=195 Identities=13% Similarity=0.013 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHHHHHH----hcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHH---HHH--HHHHH
Q 010057 301 LKKKNLVAIDSLLSGIM----DKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY---LAL--IGILI 371 (519)
Q Consensus 301 ~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~ 371 (519)
...++.+.+.++.+... .....+....+..+..+..-.|++++|..+.+...+..-.-+...| ..+ ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34566666666555443 3334445566777777777788888888887776654323333332 222 22344
Q ss_pred hcCCcch--HHHHHHHHHhcC-C-----CccchhHHHHHHHHhcC-CCcchHHHHhhhCCcCCCCc-hh---HHHHHHHH
Q 010057 372 KLNTFPK--VAEIVEEMTKAG-H-----SLGVYLGALLIHRLGSA-RRPVPAAKIFSLLPEDQKCT-AT---YTALIGVY 438 (519)
Q Consensus 372 ~~~~~~~--a~~~~~~~~~~~-~-----~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~---~~~li~~~ 438 (519)
..|+... ....+....... . .+-..+...+..++.+. +...++..-++......|.. .. +..|+..+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 5563322 223333332210 0 11223444445554441 11222222222222222221 12 23566777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPS----LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...|+.++|...++++......+. ..+-...+......-.-+.+...-...+...|+
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~ 689 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGDPD 689 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccCch
Confidence 778888888888888876543332 233333333333344445555555444444444
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.76 E-value=70 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=6.6
Q ss_pred HhcCChhhHHHHHHH
Q 010057 112 SNAGDVDGAVNIWEE 126 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~ 126 (519)
...|++++|..+.+.
T Consensus 50 mNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 50 MNRGDYQSALQLGNK 64 (115)
T ss_pred HccchHHHHHHhcCC
Confidence 344444444444433
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.56 E-value=29 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=19.5
Q ss_pred CChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010057 134 PTIVS-YTAYMKILFLNDRVKEATDVYKEMIQRGLP 168 (519)
Q Consensus 134 p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 168 (519)
||.++ |+..|....+.||+++|+++++|.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34433 345556666666666666666666655544
No 393
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.51 E-value=70 Score=23.11 Aligned_cols=86 Identities=8% Similarity=0.042 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTM--LDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
...++|..+-+|+.. .++..-...+ +..+.+.|++++|..+.+.+ ..||...|.+|-. .+.|..+.+.
T Consensus 19 HcHqEA~tIAdwL~~----~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~ 88 (115)
T TIGR02508 19 HCHQEANTIADWLHL----KGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALE 88 (115)
T ss_pred hHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHH
Confidence 567889999999853 3322333334 45677899999999998766 3689999887754 4777777777
Q ss_pred HHHHHHHHCCCCCChhhHH
Q 010057 122 NIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~ 140 (519)
.-+.+|...| .|....|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7777887775 33444443
No 394
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.94 E-value=81 Score=28.23 Aligned_cols=69 Identities=10% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCCHHHHH
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----------AGKYEEAL 191 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~~~~~~a~ 191 (519)
++|+.|.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.. |+.-|..|+..|+. .|++....
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4555555556666655555555555555556666666666554 22224444444432 35666665
Q ss_pred HHHH
Q 010057 192 EIFS 195 (519)
Q Consensus 192 ~~~~ 195 (519)
++++
T Consensus 339 kLLQ 342 (370)
T KOG4567|consen 339 KLLQ 342 (370)
T ss_pred HHHh
Confidence 5554
No 395
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.76 E-value=86 Score=25.44 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=27.6
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 010057 93 QEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRV 152 (519)
Q Consensus 93 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 152 (519)
.+.|+.++.. -..++..+...++.-.|.++++.+.+.+..++..|..--|..+...|-+
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445443332 2233344444444555555555555555444544444444455554443
No 396
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.58 E-value=31 Score=32.69 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=70.4
Q ss_pred CcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-------C----CchhHHHHHHHH-----
Q 010057 375 TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-------K----CTATYTALIGVY----- 438 (519)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~----~~~~~~~li~~~----- 438 (519)
.+++-.++++.+.+.| .+| +....+++|.+.+++++|.+.++.-.+.+ | ....-..++...
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 3455556666666554 222 33344677777777777777776554321 1 011223344332
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHhccc-------------------Cccc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPS---LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI-------------------QADA 496 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~ 496 (519)
.++|.+ .+..+++.+...|+.-. ..+|+. -|.+.=-.+++...|+.+..+ ...-
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL 221 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL 221 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc
Confidence 355664 47788888888776433 233332 222222333333333322111 1233
Q ss_pred ccccccchHHHHhhhhccCCCC
Q 010057 497 LSKDAVPMEEKICDLLYGGDGV 518 (519)
Q Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ 518 (519)
++|.+..-.++|.+++....||
T Consensus 222 vPPsisiav~ilE~Lla~eqGV 243 (480)
T TIGR01503 222 VPPSISNAIGIIEGLLAAEQGV 243 (480)
T ss_pred cChHHHHHHHHHHHHHHHHcCC
Confidence 4455555566778888777776
No 397
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.27 E-value=47 Score=20.66 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 470 (519)
+.-++.+.|++++|.+..+.+.+. .|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 455778888888888888888877 67655444443
No 398
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.19 E-value=2.4e+02 Score=28.82 Aligned_cols=154 Identities=9% Similarity=0.110 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRF-----TYTTMLDIFGEAKRISSMKYVFELMQEK----GINIDAVTYTSV-MHWLS 112 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-i~~~~ 112 (519)
..+.+.|...+.+...... .++.. .-..+++.+.+.+... |...++...+. +..+-...+..+ +..+.
T Consensus 73 T~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred cCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4899999999987642111 13221 2234455565555544 88888876653 122222333333 33333
Q ss_pred hcCChhhHHHHHHHHHHCC---CCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHH
Q 010057 113 NAGDVDGAVNIWEEMKLKE---CYPTIVSYTAYMKILF--LNDRVKEATDVYKEMIQRGL---------PPNCYTYTVLM 178 (519)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~---------~p~~~~~~~li 178 (519)
..++...|.+.++.+.... ..|-..++-.++.+.. +.+..+++.+.++++..... .|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 4489999999999886542 2334445555555544 45667778888877744221 33556677776
Q ss_pred HHH--HHcCCHHHHHHHHHHHH
Q 010057 179 EYL--VRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 179 ~~~--~~~~~~~~a~~~~~~m~ 198 (519)
..+ ...|+++.+...++++.
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 654 45677767776666553
No 399
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=56.07 E-value=1.5e+02 Score=26.74 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
-.++..+.+.++.....+.+..+. ....-...+..+...|++..|++++.+..+. .. +..-|+.+=..-
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---
Confidence 345566666666666667666664 3344456677777889999999998877653 10 111111111111
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010057 185 GKYEEALEIFSKMQEA-----GVQPDKAACNILIEKCCKAGETRTIILILR 230 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 230 (519)
.++++.....+.+.+. -..-|+..|..++.||.-.|+...+.+-+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1222333333322221 114688899999999999998776654433
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.65 E-value=1e+02 Score=25.30 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhCCCCCCH--H-----HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDA--V-----TYTSVMHWLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~--~-----~~~~li~~~~~~g~~~~a~~~~~~m~~ 129 (519)
+.|..+|+.+.+.--.|.. . .-...+-.|.+.|.+++|.+++++...
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4677777777664322210 1 112234567777888888888877765
No 401
>PRK09687 putative lyase; Provisional
Probab=55.17 E-value=1.6e+02 Score=26.42 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=24.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
+-...+.++.+.++ ..++..+-...+.+. .....+.+++..|.. +|...+..+.+
T Consensus 208 VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 208 IRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 33344444444444 334444444433321 123445555555553 35555555544
No 402
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.09 E-value=1.4e+02 Score=25.72 Aligned_cols=116 Identities=9% Similarity=-0.075 Sum_probs=61.0
Q ss_pred HHHHHHh-CCCCCCHHHHHHHHh--cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010057 20 AQDLLKN-LPIKWDSYTVNQVLK--THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKG 96 (519)
Q Consensus 20 a~~~~~~-~~~~p~~~~~~~ll~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 96 (519)
+..-|.. .+++|.-..+..-+= ..+++++|++.+-. ..+.|+- ..-++.++...|+.+.|..++..+.-..
T Consensus 65 ~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~----ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l 138 (226)
T PF13934_consen 65 LAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELLSH----PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL 138 (226)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHhCC----CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC
Confidence 3333433 366554443332221 22677777776632 2222222 2246777777788888888876654331
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 97 INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 97 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
.+......++.. ..++.+.+|...-+...... ....+..++..+.
T Consensus 139 --~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 139 --SSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred --CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 233344444444 55677777777666654431 1445555555555
No 403
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.08 E-value=1.7e+02 Score=26.83 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhhHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN---AGDVDGAVNI 123 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~ 123 (519)
+.-+.+++.+.+. .+.+...+-..|+.+.+..+.+...+.|+.+...... +...|...|..... .-.++....+
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455677776544 2456666777777777777777777777777776332 56666666655443 2234444444
Q ss_pred HHHH
Q 010057 124 WEEM 127 (519)
Q Consensus 124 ~~~m 127 (519)
|.+.
T Consensus 125 y~~~ 128 (321)
T PF08424_consen 125 YEKC 128 (321)
T ss_pred HHHH
Confidence 4443
No 404
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=54.84 E-value=1.8e+02 Score=26.91 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL---ERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
...++..+.+.+-+.|.++.|...+..+...+... .+.....-.......|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567777888888888888888888887654221 2333444455667778888888888887763
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.66 E-value=75 Score=27.79 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEA----G-VQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
..-.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345677888999999999999988532 2 33455577778888888899888877655543
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.45 E-value=1.7e+02 Score=26.56 Aligned_cols=119 Identities=12% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKE 161 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (519)
..+|+++|+...+. -..+|+ ++++...--...+.+.++....-+..-..|.-+.-+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHCCCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 010057 162 MIQRGLPPNCYTYTV---LMEYLVRAGKYEEALEIFSKMQEAGVQPDKA-ACNILI 213 (519)
Q Consensus 162 m~~~g~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li 213 (519)
+.+. .|=...+|. ||.++....-+.++..++.+.-+...+.+.. .|++.+
T Consensus 301 L~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred Hhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 407
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.92 E-value=2.9e+02 Score=29.06 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDA--VTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
+.|...|++++|.++-..- |+. .++..-...|.+.+++..|-+++.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4466677887777765322 221 23333345666777888888888876
No 408
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.68 E-value=1.5e+02 Score=25.60 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHH--CCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHH---HHHh
Q 010057 150 DRVKEATDVYKEMIQ--RGLPPNCY---TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI---LIE---KCCK 218 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~--~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---li~---~~~~ 218 (519)
.+++.|+..|++.-+ .|-+.+.. .+..+...-+..+++.+|+++|+++....+.-+..-|.. ++. ++..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566777777776554 12121222 233344445667889999999999887654443333332 111 1222
Q ss_pred cCChHHHHHHHHHHHHcCCccCHH
Q 010057 219 AGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 219 ~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
..|.-.+...++...+..+.....
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 356666677777776666554433
No 409
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.16 E-value=44 Score=21.86 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=26.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 134 PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
|+...++.++..+++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666554 245555544444443
No 410
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.98 E-value=1.2e+02 Score=26.18 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHhccCChhhHHHHHHHHHhCCC
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDL 356 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~ 356 (519)
=+...|+++.|+++.+.+.++|.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCC
Confidence 34667788888888887777764
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.23 E-value=1.1e+02 Score=23.37 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHH
Q 010057 62 FNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID-AVTYTSVMHWLSNAGDVDGAVNIWEE 126 (519)
Q Consensus 62 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 126 (519)
..-|..-...-+.. +. ....+.++|..|...|+.-. ..-|..-...+...|++++|.++|+.
T Consensus 62 Y~nD~RylkiWi~y-a~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 62 YKNDERYLKIWIKY-AD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GTT-HHHHHHHHHH-HT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH-HH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34555444443332 32 33389999999988776544 55778888888899999999999875
No 412
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.95 E-value=1.1e+02 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 010057 128 KLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 128 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 187 (519)
+..|++++..- ..++..+...++.-.|.++++.+.+.+..++..|-.--|..+...|-+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44455533332 244444444455556666777776666555666555555666666543
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.48 E-value=23 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=19.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHW 110 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 110 (519)
..|.-..|..+|..|.++|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34556667777777777776665 46666654
No 414
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.30 E-value=2.3e+02 Score=26.99 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVY 159 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~ 159 (519)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34444556655544444
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.21 E-value=1.3e+02 Score=24.64 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHCCCCCC--hhhHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 117 VDGAVNIWEEMKLKECYPT--IVSYT-----AYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~--~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
++.|+.+|+.+.+.-..|. ...-. ..+-.|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4567777776665422221 11111 122245555555555555555554
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.82 E-value=47 Score=29.04 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCRK----G-IHPSLGTFNVLLAGLEKLGRVSDAEIYR 486 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~t~~~l~~~~~~~g~~~~a~~~~ 486 (519)
-.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+-
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45677788888999999988887432 3 2334556667777778888877766554
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.66 E-value=27 Score=29.62 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
.+.++.+.|.+++.+..+.- +-...+|--+...-.+.|+++.|.+.|++..+++|++.
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34566666666666665541 22344555555555666666666666666666666543
No 418
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.39 E-value=1.4e+02 Score=30.11 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLK--ECYPTIVSYTAYMKILFLNDRVK------EATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
+|..+|..+|++-++.++++..... |-+.=...||..|+.+.+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998765 33334567899999999998754 3444444444 45577888877
Q ss_pred HHHHH
Q 010057 178 MEYLV 182 (519)
Q Consensus 178 i~~~~ 182 (519)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 76543
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.76 E-value=2e+02 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
.+-..+.+++++|...|.+....|+..|..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 3344455555555555555555555554433
No 420
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.74 E-value=96 Score=21.76 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 190 (519)
+.++++.+.+.|+- +......+-.+--..|+.+.|.+++..+. .| +..|..+++++-..|+.+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 33455555555432 22222333222234566666666666666 42 23455666666655554444
No 421
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=47.27 E-value=2.2e+02 Score=25.73 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=8.9
Q ss_pred HHHHhCCCCCCHHHHHHH
Q 010057 22 DLLKNLPIKWDSYTVNQV 39 (519)
Q Consensus 22 ~~~~~~~~~p~~~~~~~l 39 (519)
++|++.|..|+-..||++
T Consensus 75 ~V~~~VG~ePSG~~FNsi 92 (300)
T TIGR03814 75 EVWERVGVEPSGDPFNSI 92 (300)
T ss_pred HHHHHhCCCCCCCCccch
Confidence 344444555555555544
No 422
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.83 E-value=1.2e+02 Score=22.45 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.-|..|+..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588999999999999999999998877
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.36 E-value=3.3e+02 Score=27.54 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=26.2
Q ss_pred CccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHH
Q 010057 322 QLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALL 401 (519)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (519)
-.+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|...+.-+.+.|+...+..+-..+.+.....+......+
T Consensus 402 ~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~l 479 (566)
T PF07575_consen 402 LDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDL 479 (566)
T ss_dssp --SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------------------
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHH
Confidence 33445556666667777777777777765543321 1233556666667777766666555555533222222222222
Q ss_pred HHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 010057 402 IHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVY--FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 472 (519)
++.....--. .+....|..+=..| .+.|++.+|.+.+-.+.+..+.|...-...+.++
T Consensus 480 l~~i~~~~~~-------------~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 480 LDNIGSPMLL-------------SQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHhcchhhh-------------hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 2221111100 01111222222221 3347888888888888888777776655555543
No 424
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.15 E-value=1.3e+02 Score=22.90 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHH
Q 010057 446 KALKIYKTMCRKGIHPS-LGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 446 ~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
+..++|..|..+|+--. +.-|......+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35678888888876554 3345555566678888888888885
No 425
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.80 E-value=2e+02 Score=24.91 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=46.5
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHH-HHHHHhcCCCcc
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL-LIHRLGSARRPV 412 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 412 (519)
|....+++.|+..|.+... +.|+..+ |+.-+..+.+..+++.+.+--...++. .||...-.. +-..+.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 5556678888886666554 4466655 455566667777777776655555543 344333222 222334444555
Q ss_pred hHHHHhhhC
Q 010057 413 PAAKIFSLL 421 (519)
Q Consensus 413 ~A~~~~~~~ 421 (519)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 555555544
No 426
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.65 E-value=1.2e+02 Score=29.96 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=38.1
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIF 194 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 194 (519)
|+...|...+.........-.-+..-.|.+...+.|..-.|..++.+.+... ...+.++..+.+++....++++|++.|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 4444555544444332211122233334444444455555555555444432 223444555555555555555555555
Q ss_pred HHHHH
Q 010057 195 SKMQE 199 (519)
Q Consensus 195 ~~m~~ 199 (519)
++..+
T Consensus 700 ~~a~~ 704 (886)
T KOG4507|consen 700 RQALK 704 (886)
T ss_pred HHHHh
Confidence 55444
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.41 E-value=37 Score=22.23 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
.|+...++.++..+++-.-.+.+...++...+.|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45556677777777777777777777777777765 3666666666666554
No 428
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.02 E-value=1.5e+02 Score=23.30 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344555555555555444444444444444444443
No 429
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=44.92 E-value=3.2e+02 Score=27.01 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC--ccchhHHHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS--LGVYLGALLIHR 404 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 404 (519)
...-.+.++.+.+...+++.+.++.... ...|..++..+...+...+|...+.+-.+.+-+ .+....-.++..
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 4555667788888888888888776542 245788888888899888887766665544322 233344567788
Q ss_pred HhcCCCcchHHHHhhhCCcCCCCchhHHHHHHH--HHhcCCHHH
Q 010057 405 LGSARRPVPAAKIFSLLPEDQKCTATYTALIGV--YFSAGSADK 446 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~ 446 (519)
+...|++-.|.++-+.....+|+..+|--|-.+ +...|+.+.
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r~p~~~sy~~lw~~~~~~gi~~~e~ 423 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFRTPNGRSYLGLWLAAVYAGIGREER 423 (587)
T ss_pred HHhhcchHHHHHHHHHHccCCCCccchhhHHHHHHHhhhchHHH
Confidence 888999999988888877777887777665444 333444433
No 430
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.89 E-value=3.1e+02 Score=26.86 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010057 95 KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTY 174 (519)
Q Consensus 95 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 174 (519)
.|+..+......++. ...|+...|+.++++....+ ....++..+... . |+ ++...+
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~-----------------l--g~-~~~~~~ 251 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKM-----------------I--GY-HGIEFL 251 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHH-----------------h--CC-CCHHHH
Confidence 456556666555543 34577777777777654321 011222222111 1 22 244455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
..++......+....|+.+++++.+.|..|..
T Consensus 252 ~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 252 TSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 55555554444455666666666666655543
No 431
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.83 E-value=2.4e+02 Score=25.78 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHhcCCCccchhHHHHHHHHhc------CCCcchHHHHhhhCCcCCCCc-hhHHHHHHHHHhcCCHHHHH
Q 010057 376 FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS------ARRPVPAAKIFSLLPEDQKCT-ATYTALIGVYFSAGSADKAL 448 (519)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 448 (519)
++++..++......+. |.++...+.|.++-. .-++.....+++.+....|++ ++.|--+ +..+..-++.++
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAV-Ala~~~Gp~agL 349 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAV-ALAMREGPAAGL 349 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHH-HHHHhhhHHhHH
Confidence 4556666666666663 666666555554321 123445555555554444443 3344332 334444566777
Q ss_pred HHHHHHHHCCCCCCcccHHHHH-HHHHhcCChhHHHHHHHHhcccCcc
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLL-AGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...+.+.+.+--.+...|..+= ..+.+.|..++|..-|+....+.++
T Consensus 350 a~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 350 AMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 7777776664222333333333 3457888888888888888777554
No 432
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.80 E-value=1.1e+02 Score=21.53 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=37.6
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhcCCh
Q 010057 423 EDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP-SLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 423 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l~~~~~~~g~~ 479 (519)
..+.|...--.+...+...|++++|++.+-++....-.. +...-..++..+.-.|.-
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 334556777788888999999999999988888764333 344556666777666653
No 433
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.74 E-value=82 Score=23.38 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010057 72 MLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118 (519)
Q Consensus 72 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 118 (519)
++..+...+..-.|.++++.+.+.+..++..|....+..+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566666666666655555555555555555555433
No 434
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.49 E-value=31 Score=31.18 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=62.4
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCc-hhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCT-ATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 450 (519)
..|.+++|++.+...++.+ ++...+|.--...+.+.++...|++=.+...+.+||. ..|-.-..+..-.|+|.+|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4567788888888777765 4555555555666777778888877777666655542 2344444455567899999999
Q ss_pred HHHHHHCCCCCCc
Q 010057 451 YKTMCRKGIHPSL 463 (519)
Q Consensus 451 ~~~m~~~g~~p~~ 463 (519)
|....+.++.+..
T Consensus 205 l~~a~kld~dE~~ 217 (377)
T KOG1308|consen 205 LALACKLDYDEAN 217 (377)
T ss_pred HHHHHhccccHHH
Confidence 9999888765543
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.27 E-value=1.8e+02 Score=26.25 Aligned_cols=58 Identities=12% Similarity=0.449 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK 218 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 218 (519)
.++++.|...++.|.-..|..+.-.+.+.=.+..++.+++.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 35667777778888888887777777777788888888888875 33336666666663
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.02 E-value=1.4e+02 Score=21.99 Aligned_cols=80 Identities=6% Similarity=0.042 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
...++|..+.+|+.... .-...+--+-+..+.+.|++++| +. .......||...|.+|- -.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll--~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LL--LPQCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HH--HHTTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HH--hcccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 45667777777774321 11122222333445666777777 11 12223356666665553 3466666666666
Q ss_pred HHHHHHCC
Q 010057 124 WEEMKLKE 131 (519)
Q Consensus 124 ~~~m~~~~ 131 (519)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665543
No 437
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.82 E-value=4.1e+02 Score=27.38 Aligned_cols=314 Identities=8% Similarity=0.007 Sum_probs=156.4
Q ss_pred hhhhHHhhhccCChhHHHHHHHhCC-CCC-CHHHHHHHHhcCC--ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNLP-IKW-DSYTVNQVLKTHP--PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~~-~~p-~~~~~~~ll~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
....+...++.|++..+.++..++. .+. .-..|..+....+ ..++...+++.. .+.+.....-...+..+.+.
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHc
Confidence 4456667888999999999998883 222 2334555555543 455555555432 33333444445566677778
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH--HHH
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE--ATD 157 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~--a~~ 157 (519)
+++....+.+.. .+.+...-.....+....|+.++|......+=..| ......++.++..+.+.|.+.. ..+
T Consensus 113 ~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~ 186 (644)
T PRK11619 113 EDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLE 186 (644)
T ss_pred cCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHH
Confidence 888877763311 13455666667788888899887766666653333 2246677888888876665433 222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChH
Q 010057 158 VYKEMIQRGLPPNCYTYTVLMEYLV------------RAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCC--KAGETR 223 (519)
Q Consensus 158 ~~~~m~~~g~~p~~~~~~~li~~~~------------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~ 223 (519)
-+......| +...-..|..... -..+...+..++.. +.|+...-..++.++. ...+.+
T Consensus 187 R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~ 258 (644)
T PRK11619 187 RIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAE 258 (644)
T ss_pred HHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHH
Confidence 233333322 2222222222110 00111222111111 2233322222222222 345678
Q ss_pred HHHHHHHHHHHcCC-ccCHHHHH-HHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhcc--CCCCcchhHHHHH
Q 010057 224 TIILILRYMKENRL-ALRYPVFK-EALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDI--EGPLSIDQGLVLI 299 (519)
Q Consensus 224 ~a~~~~~~~~~~~~-~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 299 (519)
.|..++........ .+...... ..+ ++...... .......|..... ..+..+...-+..
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~l-A~~~a~~~----------------~~~~a~~w~~~~~~~~~~~~~~e~r~r~ 321 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIV-AWRLMGND----------------VTDEQAKWRDDVIMRSQSTSLLERRVRM 321 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHhcc----------------CCHHHHHHHHhcccccCCcHHHHHHHHH
Confidence 88888887654432 22111111 111 11100000 0011112222111 1123333444455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 010057 300 LLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSV 352 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (519)
....++.+.+...+..|..... -...-.--+.+++...|+.++|...|+.+.
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5577788777777777754332 233344445566566788888888888764
No 438
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=41.56 E-value=1.2e+02 Score=21.08 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.8
Q ss_pred hHHHHHHHhCCCCC
Q 010057 18 DSAQDLLKNLPIKW 31 (519)
Q Consensus 18 ~~a~~~~~~~~~~p 31 (519)
++|.++|+++|+.|
T Consensus 15 ~~a~~i~~~lGl~~ 28 (83)
T TIGR02384 15 KEAYAVFEELGLTP 28 (83)
T ss_pred HHHHHHHHHhCCCH
Confidence 45666777777653
No 439
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.44 E-value=74 Score=23.88 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 70 TTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 70 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34555555555566677777777766666666655555555555554
No 440
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.35 E-value=4.3e+02 Score=27.43 Aligned_cols=34 Identities=6% Similarity=-0.122 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
......|+.++.+ ++...++.+++++...|+.+.
T Consensus 246 ~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 246 KQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 3344555555544 677777777777777766443
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.68 E-value=2.1e+02 Score=23.74 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--------------CCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCRKG--------------IHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
-+++..|.+..+|.+..++++.|.+.. ..+.-...|.....|.+.|..+.|...+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 457778888899999999999997652 233345677888899999999999999974
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.37 E-value=1.5e+02 Score=21.82 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=8.8
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 010057 108 MHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 108 i~~~~~~g~~~~a~~~~~~m 127 (519)
+.-|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555544443
No 443
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.97 E-value=5e+02 Score=27.79 Aligned_cols=117 Identities=4% Similarity=0.036 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC--------
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT---IVSYTAYMKILFLNDRV--KEATDVYKEMIQRGLPP-------- 169 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p-------- 169 (519)
-|..|+..|...|+.++|+++|.+.....-.-| ..-+--++.-+-+.+.. +-++++-....+....-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 488899999999999999999998876310001 11122233333333332 33333333333221000
Q ss_pred CH---HHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 170 NC---YTY-TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 170 ~~---~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
|. .+. ..-+-.|......+-+..+++.+....-.++....+.++..|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 00 000 012234567778899999999998766666778888888888764
No 444
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.28 E-value=1.5e+02 Score=21.77 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC
Q 010057 140 TAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG--KYEEALEIFSKMQEAGVQ 203 (519)
Q Consensus 140 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~ 203 (519)
..++..|...++.++|...+.++... .--......++..+...+ .-+.+..++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45666777888888888888776322 112223334444444432 234455566666655544
No 445
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.15 E-value=3.5e+02 Score=25.80 Aligned_cols=115 Identities=4% Similarity=-0.021 Sum_probs=50.6
Q ss_pred hccCChhhHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccc---hhHHHHHHHHhcCCC
Q 010057 336 CDHRRRDGALLAFEYSVKMDLNLERTA--YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGV---YLGALLIHRLGSARR 410 (519)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 410 (519)
+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+. .+.+.+.|..++. .-.+. ++..+..|+
T Consensus 110 ~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~----v~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~ 180 (413)
T PHA02875 110 TILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG----IELLIDHKACLDIEDCCGCTP-LIIAMAKGD 180 (413)
T ss_pred HHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 445554 45555566666554332 1123334445666543 3444455543321 12222 233344566
Q ss_pred cchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 411 PVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 411 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
.+-+.-+++.-... ..+.....+++..-+..|+. ++.+.+.+.|..++.
T Consensus 181 ~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 181 IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 55555554432221 01111112333333445554 345555667766664
No 446
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.76 E-value=1.9e+02 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444443334444333344444444
No 447
>PRK09857 putative transposase; Provisional
Probab=38.08 E-value=2.8e+02 Score=25.07 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 010057 185 GKYEEALEIFSKMQEAGVQP 204 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g~~p 204 (519)
|.-+++.++...|...|+.+
T Consensus 254 G~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 254 GEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 33344455555555555443
No 448
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=37.84 E-value=57 Score=18.20 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHH
Q 010057 19 SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLF 52 (519)
Q Consensus 19 ~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~ 52 (519)
+.++.+..||..++ ..-.++....++.+.|.++
T Consensus 4 ~~v~~L~~mGf~~~-~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 4 EKVQQLMEMGFSRE-QAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHTS-HH-HHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHh
Confidence 44555555665433 4444444444677766654
No 449
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.45 E-value=3.8e+02 Score=25.71 Aligned_cols=37 Identities=14% Similarity=-0.043 Sum_probs=23.8
Q ss_pred cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 010057 338 HRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN 374 (519)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 374 (519)
..+++.|+.++..|.+.|..|....-..++.++-..|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3577888888888888877666554444444444444
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.38 E-value=4.3e+02 Score=26.26 Aligned_cols=36 Identities=3% Similarity=0.125 Sum_probs=24.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC 171 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 171 (519)
+....-.|+.+..+ |+.++|+.+++++...|..|..
T Consensus 257 ~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 257 DSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 44444555555544 7888888888888888776543
No 451
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.23 E-value=2.9e+02 Score=24.36 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----hhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV-----DGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..+.+++.+.+.+....|..+.+.+.... -=..+...|+......... ......+....+. ++ ....|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~--~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~-~f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLP--YFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQ-EFPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCC--CcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HH-cCcchHHH
Confidence 35778888888888888888888876542 1234444555443333221 1122222222211 00 11234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG-VQP-----DKAACNILIEKC 216 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-----~~~~~~~li~~~ 216 (519)
+..|++.=+...-..+|... | .| ..|+.-|.+.|+.+.|-.++--+...+ ... +...-.-|+...
T Consensus 160 vv~C~RKtE~~~W~~LF~~l---g-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a 230 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYL---G-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMA 230 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhc---C-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 55566655555555555533 2 22 257777888888888888777665443 222 333445677888
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 010057 217 CKAGETRTIILILRYMKENR 236 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~~~ 236 (519)
...++++-+.++.+-+..-+
T Consensus 231 ~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 231 LESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HhcccHHHHHHHHHHHHHhC
Confidence 88999999999998877644
No 452
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=37.02 E-value=74 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.3
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL 27 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~ 27 (519)
++.+.+..+.++|++++|.+++...
T Consensus 7 ~lsD~~LQl~K~~~yeeAkqvL~yF 31 (233)
T TIGR02878 7 DLSDQVLQLTKQARYEEAKQVLEYF 31 (233)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHHHH
Confidence 4667788899999999999999876
No 453
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.78 E-value=4.6e+02 Score=26.51 Aligned_cols=102 Identities=9% Similarity=0.043 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM 143 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 143 (519)
+....+..|++.+. .=+.+...+++.++... + ...+..++++....|-......+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 45556777777764 34677777888777641 1 567888888888888877777777777666543 233333333
Q ss_pred HHHHhc-CCHHHHHHHHHHHHH-CCCCCCH
Q 010057 144 KILFLN-DRVKEATDVYKEMIQ-RGLPPNC 171 (519)
Q Consensus 144 ~~~~~~-~~~~~a~~~~~~m~~-~g~~p~~ 171 (519)
.+.... .-..+.++.+.++.+ ..+.+..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccH
Confidence 332221 223344444444444 3444454
No 454
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=36.50 E-value=1.2e+02 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.183 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhcCCCCC
Q 010057 48 KAWLFFNWVSRSRGFNH 64 (519)
Q Consensus 48 ~A~~~~~~~~~~~~~~~ 64 (519)
++.+.+.++.+..|+.|
T Consensus 7 ~~~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITP 23 (113)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 44455555544555555
No 455
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.29 E-value=1.6e+02 Score=20.66 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 87 YVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 87 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
++|+.....|+..|+.+|..++....-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444455555555554
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.07 E-value=3e+02 Score=23.87 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=32.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHH
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN-AGDVDGAVNIWEEMKL 129 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~ 129 (519)
.+.+.+-+.++++++...+..+...+...+..-.|.+-.+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455566667777777777777776666666666665555532 2444445555555433
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.94 E-value=71 Score=30.48 Aligned_cols=69 Identities=12% Similarity=-0.116 Sum_probs=29.7
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQKC-TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
.++.+.+++..|..=+..+.+..|. ...|--=..++.+.+++.+|+..|+..... .|+..-+...+.-|
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 3444444444444444433333221 122222233344444555555555554433 55555555555444
No 458
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.89 E-value=1.7e+02 Score=20.79 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=28.7
Q ss_pred HHcCCHHHHHHHHHHHH----HcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQ----EAGVQPD----KAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~----~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+.|++..|.+.+...- ..+.... ......+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666666654444432 2222221 12222344556677888888888877655
No 459
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=34.80 E-value=1.4e+02 Score=29.62 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=22.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
.+...+.|..-.|-.++.+.+... ...+.++-.+.+++....+++.|.+.|+..
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a 702 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQA 702 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHH
Confidence 333333344444444444433332 223333334444444444444444444433
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.50 E-value=5.5e+02 Score=26.68 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHH
Q 010057 53 FNWVSRSRGFNHDRFTYTTMLDIFGEAKRI---SSMKYVFELMQEKGINID---AVTYTSVMHWLSNAGDVDGAVNIWEE 126 (519)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 126 (519)
+.+..+.-.+..+...-..+++-..+..+. ++-...+++|.++=-.|+ ..+...++-.|-...+++..+++.+.
T Consensus 147 ~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~ 226 (1226)
T KOG4279|consen 147 MKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVED 226 (1226)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHH
Q ss_pred HHHCCCCCChhh----------HHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHH-------HHHHHHHHcCCH
Q 010057 127 MKLKECYPTIVS----------YTAYMKILFLNDRVKEATDVYKEMIQ--RGLPPNCYTYT-------VLMEYLVRAGKY 187 (519)
Q Consensus 127 m~~~~~~p~~~~----------~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~-------~li~~~~~~~~~ 187 (519)
++.. ||..- |.-.++--.+.|+-++|+...-.|.+ ..+.||..... -+-+.|-..+..
T Consensus 227 Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~ 303 (1226)
T KOG4279|consen 227 LKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESL 303 (1226)
T ss_pred HHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhH
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCC
Q 010057 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE-TRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHP 266 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (519)
+.|.++|++.-+ +.|+...--.+...+...|+ ++...++-.--.+
T Consensus 304 ~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~Igmk-------------------------------- 349 (1226)
T KOG4279|consen 304 NHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMK-------------------------------- 349 (1226)
T ss_pred HHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHH--------------------------------
Q ss_pred CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHH
Q 010057 267 QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALL 346 (519)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (519)
+-....+.|.+++....|+ ....+.+-.-.+++.+|.+
T Consensus 350 -----------------------------Ln~LlgrKG~leklq~YWd-------------V~~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 350 -----------------------------LNSLLGRKGALEKLQEYWD-------------VATYFEASVLANDYQKAIQ 387 (1226)
T ss_pred -----------------------------HHHHhhccchHHHHHHHHh-------------HHHhhhhhhhccCHHHHHH
Q ss_pred HHHHHHhCCCC
Q 010057 347 AFEYSVKMDLN 357 (519)
Q Consensus 347 ~~~~~~~~~~~ 357 (519)
.-+.|.+...+
T Consensus 388 Aae~mfKLk~P 398 (1226)
T KOG4279|consen 388 AAEMMFKLKPP 398 (1226)
T ss_pred HHHHHhccCCc
No 461
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.48 E-value=4.6e+02 Score=25.78 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE 126 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 126 (519)
+...+.++......|+..+......+... ..|+...|..++++....+- ...++..+... +
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~-------------l-- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKM-------------I-- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCC--CCcCHHHHHHH-------------h--
Confidence 34455556555566777777776666654 45888888888877553210 11122222111 1
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 010057 127 MKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCY 172 (519)
Q Consensus 127 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 172 (519)
|.. +...+..++.+....+....|+.++++|.+.|..|...
T Consensus 244 ----g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ----GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ----CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 222 45555556665555555567777777777777655433
No 462
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.39 E-value=1.8e+02 Score=21.03 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 447 ALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 447 A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
-.+.+++....+....+-....|.-.|.+.|+.+.|.+-|+.-+.+.|+
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 3455666666654444444556667788899999998888877666553
No 463
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.39 E-value=1.3e+02 Score=22.31 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 150 DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
+..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444445555544444444444444444444444
No 464
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.14 E-value=2.1e+02 Score=21.84 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhc
Q 010057 446 KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 446 ~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~ 490 (519)
-...+++.+++.++.-....+.-+-.-|.+..+..+|..+|+.++
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 344556667777755555555555556677778888888887664
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.04 E-value=3.1e+02 Score=23.73 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 010057 99 IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYP 134 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 134 (519)
|.+.....++..|. .+++++|.+++.++-+.|..|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 44444444444432 244555555555555555543
No 466
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=34.03 E-value=5.9e+02 Score=26.90 Aligned_cols=45 Identities=0% Similarity=-0.077 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQ 93 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 93 (519)
++..+.++.+....|+.-+......+.+. ..|+...++.++++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAi 225 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 34445555554455555555555555444 2466666666665544
No 467
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.17 E-value=5e+02 Score=25.83 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=26.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCY 172 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 172 (519)
+......++.++.. ++.+.+++++++|...|..|...
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 44555556665544 78888999999999888776543
No 468
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.55 E-value=4.4e+02 Score=24.99 Aligned_cols=182 Identities=15% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc---------CCCcc
Q 010057 326 AVISTIIEVNCDHRRRDGALLAFEYSVKM--DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA---------GHSLG 394 (519)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 394 (519)
..+.-+...|...|+++.|++.|.+.+.. ..+-....+..+|..-.-.|+|.....+....... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcC--------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPED--------QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 466 (519)
...+..|.+...+ +...|.+.|-..... .|...+.-..+.+++--++-+--+.+...-.-..+---...+
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCcc--cccccccchHHHHhh
Q 010057 467 NVLLAGLEKLGRVSDAEIYRKEKKSIQAD--ALSKDAVPMEEKICD 510 (519)
Q Consensus 467 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~i~~ 510 (519)
..++..|.. +++....+++++++.--.- ++.|..-++...|..
T Consensus 309 r~il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~ 353 (466)
T KOG0686|consen 309 REILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRN 353 (466)
T ss_pred HHHHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHHH
No 469
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.54 E-value=4.4e+02 Score=24.96 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=41.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIV--SYTAYMKILF--LNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 165 (519)
..+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445889999999999999987 555554 4555556554 366788999999987764
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.35 E-value=1.1e+02 Score=28.93 Aligned_cols=130 Identities=14% Similarity=0.048 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhc--CC-----CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHH
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKA--GH-----SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTA 433 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 433 (519)
.+...+++.++-.||+..|+++++.+.-. ++ .-...++-.+.-+|...+++.+|.+.|..+. .|-.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL-------~yi~ 195 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL-------LYIQ 195 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 34556777888889999999998887521 11 1234456667777788888888888875441 2211
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHHC-----CCCC---CcccHHHHHHHH------HhcCChhHHHHHHHHhcccCcccc
Q 010057 434 LIG--VYFSAGSADKALKIYKTMCRK-----GIHP---SLGTFNVLLAGL------EKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 434 li~--~~~~~g~~~~A~~~~~~m~~~-----g~~p---~~~t~~~l~~~~------~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
=.. ...+..+++...+..++|... -+.| |..+...+=.-| ...|+.+.-+++| ....|..+
T Consensus 196 r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF---~~acPKFI 272 (404)
T PF10255_consen 196 RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF---SFACPKFI 272 (404)
T ss_pred HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH---HhhCCCcc
Confidence 111 122334555555555555432 1123 333333333333 2244444445555 44567666
Q ss_pred ccc
Q 010057 498 SKD 500 (519)
Q Consensus 498 ~~~ 500 (519)
.|.
T Consensus 273 sp~ 275 (404)
T PF10255_consen 273 SPV 275 (404)
T ss_pred CCC
Confidence 665
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.00 E-value=1.4e+02 Score=19.24 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=20.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChhhHHHH
Q 010057 78 EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWL-----SNAGDVDGAVNI 123 (519)
Q Consensus 78 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~ 123 (519)
..|++=++-++++.+=.....+....+..+|... .+.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4555556666665554332223344444444433 234555555443
No 472
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.77 E-value=3.6e+02 Score=23.79 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChhhHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC-
Q 010057 96 GINIDAVTYTSVMHWL-SNAGDVDGAVNIWEEMKLKECYPTIV---SYTAYMKILFLNDRVKEATDVYKEMIQR---GL- 167 (519)
Q Consensus 96 ~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~- 167 (519)
+-.||+..-|..-.+- .+..++++|+.-|++..+..-....+ +...+|..+.+.+++++.+..|.+|+.. .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455555444332211 13346777777777776652222233 2345667777888888888877777531 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 168 -PPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE----A-GVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 168 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
.-+..+.|.++..-+...+.+-...+|+.-.+ . +-+.=..|-+-|...|...+++.+..++++++.+.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 12344566777766666666555555543321 1 00111113345677788888888888888887763
No 473
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.66 E-value=3e+02 Score=24.02 Aligned_cols=64 Identities=5% Similarity=-0.016 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+-.+-.++...|++-++++.-.+..... +-+...|--=..+.+..=+.++|..-+.+..+++|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3444455556666666666666666552 222333333333333333445566666666666553
No 474
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.51 E-value=2.5e+02 Score=24.35 Aligned_cols=118 Identities=10% Similarity=-0.080 Sum_probs=75.2
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCccc-hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCch-hHHHHHHHHHhcCCHHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAGHSLGV-YLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA-TYTALIGVYFSAGSADKA 447 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A 447 (519)
|.....++.|..-|.+.+.. .|+. .-|+.-+-++.+..+++.+..-=.+..+..||.+ ..-.+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 55556788888877666654 3655 3445556667777787777666555555555533 445566677788889999
Q ss_pred HHHHHHHHHC----CCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 448 LKIYKTMCRK----GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 448 ~~~~~~m~~~----g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
+..+.+.... .++|-......|..+=...=...++.++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999887543 34454556666665554444455666666554
No 475
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.50 E-value=2.1e+02 Score=21.08 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVY 159 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (519)
...++|..+.+.+...+.. ...+--.-+..+.+.|++++| +.. ......||...|-+|-. .+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 3556677777776665431 222222223455566777777 111 11223566666665543 3566666666666
Q ss_pred HHHHHCC
Q 010057 160 KEMIQRG 166 (519)
Q Consensus 160 ~~m~~~g 166 (519)
..+-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665543
No 476
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.41 E-value=1.9e+02 Score=20.32 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 192 EIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 192 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
++|+-....|+..|..+|..++....-+=-++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555566666666666666655555555555555555543
No 477
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.18 E-value=2.1e+02 Score=21.79 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=31.9
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTA-TYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
..+.-++..++.-.|..++|.++++...=. ++-. .=.-++..|.++.+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG-~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWG-HTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334455555666666666666666554321 1111 1134677777777766666655443
No 478
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=30.99 E-value=12 Score=25.39 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=20.9
Q ss_pred CCCCcccHHHHHHHHHhcCCh--h----HHHHHHHHhcccCcccccccccchHHHHhhh
Q 010057 459 IHPSLGTFNVLLAGLEKLGRV--S----DAEIYRKEKKSIQADALSKDAVPMEEKICDL 511 (519)
Q Consensus 459 ~~p~~~t~~~l~~~~~~~g~~--~----~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 511 (519)
+..+..+|..++++|++.|.+ | .-+++++...++.|+.+..-..|...+|-+-
T Consensus 20 Lsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTveELIE~S 78 (88)
T PF11491_consen 20 LSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVEELIESS 78 (88)
T ss_dssp TTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS-------SS-----
T ss_pred hhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheeeccccHHHHHHHh
Confidence 456778899999999998863 2 3477888888888888888777777666543
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.87 E-value=1.6e+02 Score=24.59 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL-GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...+.++..+...|+++.|-+.|.-++... ..|. ..|..-+..+.+.+.-....++++.+....+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 345778888888888888888888887653 3343 2455556666776666665577777655544
No 480
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.82 E-value=5.5e+02 Score=25.54 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
......+++++ ..++.++|+.+++++...|..|.
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33344555555 55888999999999988875543
No 481
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=30.62 E-value=3.3e+02 Score=23.76 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------
Q 010057 85 MKYVFELMQEKGINIDAVTYTSVMHWLSNA----GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND---------- 150 (519)
Q Consensus 85 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------- 150 (519)
+.+.|..+.+. +..|......-+..+... |.+.+.-.++..-...|+..+...-.-++-++...+
T Consensus 33 v~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~ 111 (246)
T PF07678_consen 33 VVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEY 111 (246)
T ss_dssp HHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCH
T ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhh
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------------CCC
Q 010057 151 --RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-------------------------GVQ 203 (519)
Q Consensus 151 --~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------------------------g~~ 203 (519)
-.++|...++.-... ..+.++...+--++...|+.+.+.++++.+... +-.
T Consensus 112 ~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s 189 (246)
T PF07678_consen 112 ENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSS 189 (246)
T ss_dssp HHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHH
T ss_pred HHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccch
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 204 PDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 204 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.++.+-.-.+-++.+.++.+.+..+.+.+.+..
T Consensus 190 ~~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~qr 222 (246)
T PF07678_consen 190 LDVETTAYALLALLKRGDLEEASPIVRWLISQR 222 (246)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.53 E-value=4.1e+02 Score=23.98 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
++....+.++.....+.+..+.. ...-...++.....|++.+|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444432 22333445555566666666666666554
No 483
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.44 E-value=2.8e+02 Score=23.61 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=14.3
Q ss_pred HHHHhcCChhHHHHHHHHhccc
Q 010057 471 AGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 471 ~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
....+.|+.++|.++|.++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3446777777777777766543
No 484
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.41 E-value=4.1e+02 Score=24.03 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=37.3
Q ss_pred hcCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 148 LNDRVKEATDVY-KEMIQRGLPPNCY----TYTVLMEYLVRAGKYE-EALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 148 ~~~~~~~a~~~~-~~m~~~g~~p~~~----~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+...+++..... ++|++.++ |+.. .|..+|++---+.+-+ -|.+.+++ ..+|.-|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCCh
Confidence 334445544443 45666654 4543 4666666543332111 12222222 3468889999999998
Q ss_pred hHHHH
Q 010057 222 TRTII 226 (519)
Q Consensus 222 ~~~a~ 226 (519)
.+..+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 77654
No 485
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.37 E-value=6.9e+02 Score=26.55 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
+.+.-..+...|+.+....+-.-|.+ |..++.-+.+.+.+++|++++..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666777777665555543 66777888888888888887764
No 486
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.35 E-value=61 Score=18.45 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=15.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 465 TFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
+|..+.......+++++|.+=|++..++..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344445555555556665555555554433
No 487
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.96 E-value=4.4e+02 Score=24.19 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhcC------------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 63 NHDRFTYTTMLDIFGEAK------------RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~------------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+-|+.+|-.++..--..- -.+.-..++++..+.+. -+...+..+|..+.+.-+.+...+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456667766665432221 12344556666666533 35566666777777777777777777777665
Q ss_pred CCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 010057 131 ECYPTIVSYTAYMKILFL---NDRVKEATDVYKEM 162 (519)
Q Consensus 131 ~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m 162 (519)
... +...|...|...-. .-.++...++|.+.
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 211 45555555554333 22344555555443
No 488
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=29.77 E-value=3.1e+02 Score=22.42 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 85 MKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 85 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
...+++.+.+.|..-|..--.+.++.-.+.| ..-..+..++.+.|+ +..+-...+..+......+.|.+++..-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 4445555555555434333334444444444 444555556666663 444444444444444444555544444333
Q ss_pred C-CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 010057 165 R-GLPPNCYTYTVLMEYLVRAG-KYEEALEIFSKM 197 (519)
Q Consensus 165 ~-g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m 197 (519)
. +.+|+..-...+.+.+.+.| .++.+..++..+
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 2 23444444444444444444 334444444333
No 489
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.65 E-value=3.7e+02 Score=23.29 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 010057 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG 477 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g 477 (519)
|.+.....++..|.+ ++.++|.+.+.++.+.|+.|.. ..+.+++++-...
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVVKNMD 286 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhcc
Confidence 556677778877664 5899999999999999988753 3456666665443
No 490
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.50 E-value=4.7e+02 Score=24.38 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhh
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVS 138 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~ 138 (519)
.|++.+.-.++.-+....+-+....+-... ..+.+.+-.++.+.+.....+++..+.... +.|. ...
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhh
Confidence 356666666666666555533222111111 123444555555555555444433333221 1111 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQ-----RGLPPNCYTYTVLM---EYLVRAGKYEEALEIFSKMQEAGVQPDKAACN 210 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 210 (519)
...++..+.+.+++..++..++.-.. .+.-|-...+.-+. -.|...++++.|+.+|..+.- .|....-.
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~ 219 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSH 219 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHH
Confidence 34556666666666655554432211 11111111111111 123345688888888888775 35444444
Q ss_pred HHHHHHH
Q 010057 211 ILIEKCC 217 (519)
Q Consensus 211 ~li~~~~ 217 (519)
..+.+|-
T Consensus 220 ~hlEaYk 226 (422)
T KOG2582|consen 220 IHLEAYK 226 (422)
T ss_pred HHHHHHH
Confidence 4455543
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.31 E-value=2.5e+02 Score=21.23 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCC-cccHHHHH----HHHHhcCChhHHHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCR----KG-IHPS-LGTFNVLL----AGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~-~~t~~~l~----~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..++..|-.++...|++++++.--+.... .| +.-| ...|...+ .++...|..++|...|+..-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45667777888888888776654444332 12 2333 33343333 2567788899998888876554
No 492
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.22 E-value=1.4e+02 Score=22.35 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=20.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
.++......+..-.|.++++.+.+.+...+..|.-.-|..+.+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 3444445555555566666666555544444443333333333
No 493
>PRK00971 glutaminase; Provisional
Probab=29.01 E-value=4.5e+02 Score=23.95 Aligned_cols=18 Identities=6% Similarity=-0.217 Sum_probs=9.1
Q ss_pred HHHHHHHhcCChHHHHHH
Q 010057 211 ILIEKCCKAGETRTIILI 228 (519)
Q Consensus 211 ~li~~~~~~g~~~~a~~~ 228 (519)
.+......+|.++.+-+.
T Consensus 232 ~v~s~M~TcGmYD~SG~f 249 (307)
T PRK00971 232 QVNALMLTCGMYDASGEF 249 (307)
T ss_pred HHHHHHHHcCCccchHHH
Confidence 333344445666665554
No 494
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=28.87 E-value=1.4e+02 Score=23.12 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=22.5
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 112 SNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 112 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
-+.|-..+...++++|.+.|+..+...|+..++
T Consensus 120 k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 120 KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 355666677777777777777777777766554
No 495
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.29 E-value=2.2e+02 Score=20.16 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=11.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~ 198 (519)
...+...|++++|...+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666665554
No 496
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.06 E-value=73 Score=21.55 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=28.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~ 478 (519)
-.++.+.+.+++++..+.|+.|.......+.-+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 357888999999999988888877766666666655554
No 497
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.02 E-value=1.5e+02 Score=20.03 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 010057 150 DRVKEATDVYKEMIQRGLPPNC 171 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p~~ 171 (519)
++.+.+.+++++..+.|..|..
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~ 36 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPED 36 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTH
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 3444444444444444443333
No 498
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.94 E-value=95 Score=15.85 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=6.5
Q ss_pred ChHHHHHHHHHHh
Q 010057 45 PMEKAWLFFNWVS 57 (519)
Q Consensus 45 ~~~~A~~~~~~~~ 57 (519)
+.+.|.++|+.+.
T Consensus 2 ~~~~~r~i~e~~l 14 (33)
T smart00386 2 DIERARKIYERAL 14 (33)
T ss_pred cHHHHHHHHHHHH
Confidence 3445555555554
No 499
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.76 E-value=6.2e+02 Score=25.18 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKG 96 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 96 (519)
+.....++.+....++..+...+..+.++ ..|....+..+++++...|
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHcc
Confidence 34555566666666666666666655544 4566677777777776653
No 500
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=27.67 E-value=1.2e+02 Score=16.76 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHH
Q 010057 19 SAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLF 52 (519)
Q Consensus 19 ~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~ 52 (519)
+.++.+..||..++ ....++-...++.+.|.+.
T Consensus 3 ~~v~~L~~mGf~~~-~a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 3 EKIDQLLEMGFSRE-EALKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHHcCCCHH-HHHHHHHHhCCCHHHHHHH
Confidence 45556666665433 4444444444666666543
Done!