Query 010057
Match_columns 519
No_of_seqs 494 out of 2444
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 18:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-37 3.8E-42 311.6 34.0 455 13-496 65-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.5E-36 2.9E-40 297.9 34.9 423 43-495 66-548 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.4E-32 4.8E-37 262.7 25.7 203 50-253 10-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.3E-32 1.5E-36 259.4 25.2 207 83-373 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 8.5E-27 2.9E-31 219.6 41.4 371 9-475 7-385 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-26 7.2E-31 216.9 39.9 359 43-495 12-371 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.9E-27 199.0 32.8 193 299-495 279-481 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 5.7E-22 2E-26 190.6 35.4 341 63-498 23-416 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 3.5E-21 1.2E-25 185.0 36.4 211 19-236 10-241 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.8E-21 6.3E-26 190.4 33.8 401 4-463 9-482 (514)
11 3fp2_A TPR repeat-containing p 99.9 3.3E-21 1.1E-25 189.7 28.4 387 44-495 39-494 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.6E-18 5.5E-23 161.0 34.8 169 324-495 153-338 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 6.3E-18 2.2E-22 157.0 35.3 314 66-473 3-350 (359)
14 3fp2_A TPR repeat-containing p 99.8 2.2E-18 7.4E-23 169.6 31.8 377 66-496 25-461 (537)
15 3hym_B Cell division cycle pro 99.8 1.1E-17 3.9E-22 153.3 28.0 270 99-457 20-299 (330)
16 3hym_B Cell division cycle pro 99.8 4.5E-17 1.5E-21 149.3 29.9 293 63-445 19-322 (330)
17 3spa_A Mtrpol, DNA-directed RN 99.8 7.9E-20 2.7E-24 179.6 10.8 119 101-219 127-249 (1134)
18 2xm6_A Protein corresponding t 99.8 6.2E-15 2.1E-19 142.8 45.1 354 63-493 36-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 5.8E-18 2E-22 157.9 21.9 329 80-492 15-359 (368)
20 1fch_A Peroxisomal targeting s 99.8 2.2E-17 7.6E-22 153.9 25.3 282 13-389 13-314 (368)
21 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.1E-20 147.7 39.6 409 32-497 12-497 (530)
22 3spa_A Mtrpol, DNA-directed RN 99.8 2.2E-19 7.4E-24 176.6 10.4 150 66-220 127-286 (1134)
23 1b89_A Protein (clathrin heavy 99.8 5E-18 1.7E-22 154.6 17.5 168 34-232 7-174 (449)
24 4eqf_A PEX5-related protein; a 99.8 9.1E-18 3.1E-22 156.4 19.6 279 135-491 64-355 (365)
25 2xm6_A Protein corresponding t 99.8 1.8E-14 6.2E-19 139.5 41.2 339 43-459 56-434 (490)
26 3cv0_A Peroxisome targeting si 99.8 1.3E-16 4.6E-21 146.0 22.9 288 135-498 20-321 (327)
27 1b89_A Protein (clathrin heavy 99.7 3.6E-17 1.2E-21 149.1 17.0 182 13-228 15-199 (449)
28 2ooe_A Cleavage stimulation fa 99.7 2.7E-14 9.3E-19 139.7 37.9 405 63-495 10-457 (530)
29 4eqf_A PEX5-related protein; a 99.7 8E-16 2.7E-20 143.2 25.4 235 65-389 64-310 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.8E-20 135.2 25.2 152 74-235 7-159 (291)
31 3mkr_A Coatomer subunit epsilo 99.7 5.7E-16 2E-20 138.3 20.5 250 109-457 7-264 (291)
32 3cv0_A Peroxisome targeting si 99.7 5.7E-15 2E-19 135.0 25.9 230 69-389 24-269 (327)
33 1xi4_A Clathrin heavy chain; a 99.7 3.5E-13 1.2E-17 137.4 38.2 377 11-490 1059-1456(1630)
34 4g1t_A Interferon-induced prot 99.7 1.4E-13 5E-18 132.7 34.1 368 63-495 48-462 (472)
35 1xi4_A Clathrin heavy chain; a 99.6 3.9E-12 1.3E-16 129.9 38.3 386 31-488 951-1341(1630)
36 3uq3_A Heat shock protein STI1 99.6 3.1E-14 1.1E-18 125.2 19.6 232 171-495 5-239 (258)
37 4g1t_A Interferon-induced prot 99.6 2.2E-12 7.4E-17 124.5 32.2 389 31-466 49-469 (472)
38 3uq3_A Heat shock protein STI1 99.6 2.1E-13 7.2E-18 119.9 21.4 116 340-457 120-236 (258)
39 2pl2_A Hypothetical conserved 99.6 9.2E-13 3.2E-17 112.2 22.9 167 63-234 2-179 (217)
40 2pl2_A Hypothetical conserved 99.6 1.1E-12 3.7E-17 111.8 22.1 199 133-421 2-211 (217)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.3E-13 2.5E-17 117.7 21.7 151 328-486 114-269 (275)
42 1ouv_A Conserved hypothetical 99.5 4.4E-11 1.5E-15 106.0 33.0 224 65-390 5-252 (273)
43 2h6f_A Protein farnesyltransfe 99.5 7.5E-12 2.6E-16 115.5 26.6 247 136-473 97-363 (382)
44 1ouv_A Conserved hypothetical 99.5 4.3E-11 1.5E-15 106.1 30.4 222 100-423 5-250 (273)
45 2h6f_A Protein farnesyltransfe 99.5 3.4E-12 1.2E-16 117.8 23.5 236 171-496 97-352 (382)
46 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-11 5.9E-16 107.2 27.0 129 103-233 39-168 (252)
47 3u4t_A TPR repeat-containing p 99.5 4.2E-12 1.4E-16 112.6 23.0 128 103-232 5-134 (272)
48 2ho1_A Type 4 fimbrial biogene 99.5 2.5E-11 8.5E-16 106.2 27.3 166 66-234 37-203 (252)
49 3e4b_A ALGK; tetratricopeptide 99.5 1.9E-12 6.4E-17 123.4 21.2 373 9-492 11-421 (452)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.7E-13 3E-17 117.2 17.8 183 44-232 19-203 (275)
51 2vq2_A PILW, putative fimbrial 99.5 3.3E-11 1.1E-15 103.2 26.8 163 66-231 8-172 (225)
52 3u4t_A TPR repeat-containing p 99.5 1.2E-11 4E-16 109.7 23.9 164 69-235 6-171 (272)
53 4e6h_A MRNA 3'-END-processing 99.5 6.6E-10 2.2E-14 109.6 37.8 221 288-515 341-588 (679)
54 3e4b_A ALGK; tetratricopeptide 99.5 4.2E-12 1.4E-16 121.0 21.6 141 339-492 231-387 (452)
55 2q7f_A YRRB protein; TPR, prot 99.5 1E-11 3.5E-16 107.9 22.0 165 66-234 23-187 (243)
56 2q7f_A YRRB protein; TPR, prot 99.5 1E-11 3.4E-16 108.0 21.8 202 100-390 22-223 (243)
57 3ulq_A Response regulator aspa 99.5 1.5E-11 5.3E-16 114.9 24.1 298 77-455 23-366 (383)
58 2vq2_A PILW, putative fimbrial 99.5 8.8E-11 3E-15 100.5 26.9 191 42-236 20-212 (225)
59 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4.2E-17 123.8 16.2 278 138-495 50-375 (411)
60 3vtx_A MAMA; tetratricopeptide 99.5 2.7E-12 9.4E-17 106.3 16.2 170 324-496 4-174 (184)
61 3sf4_A G-protein-signaling mod 99.4 1.1E-12 3.9E-17 123.7 15.0 276 135-456 8-335 (406)
62 3sf4_A G-protein-signaling mod 99.4 3.1E-12 1.1E-16 120.6 17.9 300 100-444 8-363 (406)
63 3ro2_A PINS homolog, G-protein 99.4 2.2E-12 7.4E-17 118.2 16.1 134 362-495 185-335 (338)
64 3ulq_A Response regulator aspa 99.4 2.7E-11 9.3E-16 113.2 22.1 300 3-388 14-367 (383)
65 3nf1_A KLC 1, kinesin light ch 99.4 7.9E-12 2.7E-16 113.1 17.8 244 136-456 27-306 (311)
66 4a1s_A PINS, partner of inscut 99.4 3.4E-12 1.2E-16 120.7 15.9 275 103-457 50-372 (411)
67 3ro2_A PINS homolog, G-protein 99.4 2.1E-11 7.1E-16 111.6 19.4 274 104-457 8-332 (338)
68 3vtx_A MAMA; tetratricopeptide 99.4 2.7E-10 9.2E-15 94.2 23.0 169 64-236 3-171 (184)
69 2ond_A Cleavage stimulation fa 99.4 2.5E-10 8.5E-15 103.0 24.3 166 327-495 101-273 (308)
70 4e6h_A MRNA 3'-END-processing 99.4 1.4E-08 4.8E-13 100.2 38.4 438 17-474 48-585 (679)
71 3nf1_A KLC 1, kinesin light ch 99.4 3E-11 1E-15 109.2 17.8 248 170-495 26-310 (311)
72 3q15_A PSP28, response regulat 99.3 5.7E-10 2E-14 103.9 26.5 314 63-455 7-363 (378)
73 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.1E-14 101.6 27.6 273 142-494 20-324 (373)
74 2ond_A Cleavage stimulation fa 99.3 3.7E-09 1.3E-13 95.2 29.9 218 83-390 33-271 (308)
75 4abn_A Tetratricopeptide repea 99.3 1.7E-10 5.8E-15 110.6 20.8 185 46-236 84-288 (474)
76 4abn_A Tetratricopeptide repea 99.3 2.4E-10 8.3E-15 109.5 20.2 215 117-421 84-318 (474)
77 3as5_A MAMA; tetratricopeptide 99.3 4.4E-11 1.5E-15 98.9 13.0 169 325-496 8-177 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.3 4.4E-11 1.5E-15 119.3 14.0 173 324-499 8-181 (723)
79 3as5_A MAMA; tetratricopeptide 99.3 1.5E-09 5.2E-14 89.5 21.1 166 66-235 8-173 (186)
80 3q15_A PSP28, response regulat 99.2 1.7E-09 5.7E-14 100.8 23.0 231 3-235 14-290 (378)
81 4i17_A Hypothetical protein; T 99.2 2.4E-10 8.2E-15 98.2 14.6 195 292-496 9-213 (228)
82 3edt_B KLC 2, kinesin light ch 99.2 1.2E-09 4.1E-14 97.1 19.2 232 148-456 13-280 (283)
83 1hz4_A MALT regulatory protein 99.2 1.5E-08 5.2E-13 94.1 27.0 274 70-387 18-320 (373)
84 4gyw_A UDP-N-acetylglucosamine 99.2 2.9E-09 1E-13 106.3 21.6 166 65-234 8-173 (723)
85 4i17_A Hypothetical protein; T 99.1 1.8E-08 6.1E-13 86.3 22.3 179 44-236 21-210 (228)
86 3edt_B KLC 2, kinesin light ch 99.1 4.5E-10 1.5E-14 99.8 12.1 169 324-492 42-281 (283)
87 1qqe_A Vesicular transport pro 99.1 9.3E-09 3.2E-13 91.8 20.2 222 151-495 32-272 (292)
88 2uy1_A Cleavage stimulation fa 99.1 3.2E-07 1.1E-11 87.8 29.5 376 14-456 7-412 (493)
89 3mv2_B Coatomer subunit epsilo 99.0 5.9E-09 2E-13 91.2 14.7 183 309-496 85-286 (310)
90 2fo7_A Synthetic consensus TPR 99.0 5E-08 1.7E-12 75.4 17.6 128 104-234 4-131 (136)
91 2fo7_A Synthetic consensus TPR 99.0 4.7E-08 1.6E-12 75.5 17.4 130 68-200 3-132 (136)
92 1qqe_A Vesicular transport pro 99.0 8.3E-09 2.8E-13 92.1 13.6 178 306-498 33-234 (292)
93 3qky_A Outer membrane assembly 98.9 1.3E-08 4.4E-13 89.3 13.9 168 325-495 15-227 (261)
94 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.8E-08 1.7E-12 83.4 16.8 90 408-499 109-220 (225)
95 3mv2_B Coatomer subunit epsilo 98.9 9.5E-08 3.3E-12 83.6 18.1 180 49-236 85-283 (310)
96 3urz_A Uncharacterized protein 98.9 9.4E-09 3.2E-13 86.6 10.7 127 366-495 60-189 (208)
97 2vsy_A XCC0866; transferase, g 98.8 1.7E-08 5.8E-13 99.5 12.4 153 303-458 2-158 (568)
98 3qky_A Outer membrane assembly 98.8 5.4E-07 1.9E-11 78.8 20.5 172 64-238 13-227 (261)
99 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-06 4E-11 73.8 21.3 178 48-238 4-200 (212)
100 3dra_A Protein farnesyltransfe 98.8 1.1E-06 3.8E-11 77.6 21.6 227 3-234 34-286 (306)
101 2yhc_A BAMD, UPF0169 lipoprote 98.8 7.7E-07 2.6E-11 75.8 20.2 61 176-238 152-216 (225)
102 2pzi_A Probable serine/threoni 98.8 1.8E-07 6.1E-12 93.9 17.7 175 41-221 402-583 (681)
103 3qou_A Protein YBBN; thioredox 98.8 5.7E-07 1.9E-11 79.8 18.9 168 63-234 114-283 (287)
104 3urz_A Uncharacterized protein 98.8 4.7E-07 1.6E-11 76.1 17.4 126 107-236 60-187 (208)
105 2ifu_A Gamma-SNAP; membrane fu 98.8 5E-08 1.7E-12 87.7 11.7 167 328-496 39-227 (307)
106 3qou_A Protein YBBN; thioredox 98.7 9.5E-08 3.2E-12 84.9 12.9 163 323-490 115-282 (287)
107 2pzi_A Probable serine/threoni 98.7 8.8E-08 3E-12 96.1 14.1 184 300-489 401-602 (681)
108 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.1E-12 75.9 13.9 161 69-233 9-171 (176)
109 3rjv_A Putative SEL1 repeat pr 98.7 8E-07 2.7E-11 74.9 17.8 171 310-492 6-197 (212)
110 2uy1_A Cleavage stimulation fa 98.7 2.3E-05 7.8E-10 75.0 29.6 363 4-422 17-411 (493)
111 4ga2_A E3 SUMO-protein ligase 98.7 1.5E-08 5.2E-13 80.1 6.4 125 334-494 6-131 (150)
112 2vsy_A XCC0866; transferase, g 98.7 5.1E-07 1.7E-11 88.9 18.5 152 44-200 3-157 (568)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.5E-07 1.2E-11 77.2 15.2 145 330-492 11-172 (213)
114 2qfc_A PLCR protein; TPR, HTH, 98.7 1.1E-05 3.6E-10 71.9 24.6 207 23-234 36-265 (293)
115 2r5s_A Uncharacterized protein 98.7 4.8E-07 1.6E-11 73.7 14.5 156 39-199 15-172 (176)
116 3u3w_A Transcriptional activat 98.7 7.5E-07 2.6E-11 79.4 16.8 163 332-494 82-268 (293)
117 4ga2_A E3 SUMO-protein ligase 98.7 1.6E-07 5.3E-12 74.3 10.2 83 105-189 35-117 (150)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3E-06 1E-10 71.4 18.3 141 105-250 10-165 (213)
119 3gyz_A Chaperone protein IPGC; 98.6 2.4E-07 8.1E-12 72.9 10.3 100 395-495 36-136 (151)
120 3dra_A Protein farnesyltransfe 98.6 7.5E-05 2.6E-09 66.0 26.8 137 81-221 48-195 (306)
121 2ifu_A Gamma-SNAP; membrane fu 98.6 3.3E-06 1.1E-10 75.7 18.3 198 14-233 4-222 (307)
122 4gco_A Protein STI-1; structur 98.6 2.1E-07 7.1E-12 70.9 8.1 95 401-496 19-114 (126)
123 3u3w_A Transcriptional activat 98.5 6.6E-06 2.3E-10 73.2 19.0 166 69-234 78-265 (293)
124 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.7E-11 69.1 12.1 101 361-464 37-138 (151)
125 2qfc_A PLCR protein; TPR, HTH, 98.5 1.3E-06 4.5E-11 77.8 14.3 166 328-493 78-267 (293)
126 2vgx_A Chaperone SYCD; alterna 98.5 8.9E-08 3.1E-12 75.4 5.6 93 363-456 24-117 (148)
127 2e2e_A Formate-dependent nitri 98.5 5.5E-07 1.9E-11 73.4 10.0 132 335-470 20-155 (177)
128 2e2e_A Formate-dependent nitri 98.5 3.8E-07 1.3E-11 74.4 8.4 124 371-496 21-148 (177)
129 1a17_A Serine/threonine protei 98.5 9.1E-06 3.1E-10 65.1 16.6 128 103-233 15-144 (166)
130 1na0_A Designed protein CTPR3; 98.5 1E-05 3.5E-10 61.0 15.9 96 102-199 10-105 (125)
131 1a17_A Serine/threonine protei 98.5 1.4E-05 4.7E-10 64.0 17.0 131 66-199 13-145 (166)
132 1na0_A Designed protein CTPR3; 98.5 1.2E-05 4.2E-10 60.5 15.8 115 66-183 9-123 (125)
133 3gw4_A Uncharacterized protein 98.5 3.1E-06 1.1E-10 70.6 13.4 157 77-234 3-175 (203)
134 2c2l_A CHIP, carboxy terminus 98.4 1.7E-06 5.9E-11 76.4 11.4 50 441-492 148-199 (281)
135 4f3v_A ESX-1 secretion system 98.4 8E-06 2.7E-10 70.5 14.9 188 44-238 20-240 (282)
136 2vyi_A SGTA protein; chaperone 98.4 1.7E-05 5.9E-10 60.3 15.5 117 102-221 13-129 (131)
137 4gco_A Protein STI-1; structur 98.4 1.5E-05 5.1E-10 60.5 14.7 94 69-164 16-109 (126)
138 3q7a_A Farnesyltransferase alp 98.4 0.00038 1.3E-08 62.2 25.6 86 149-236 67-155 (349)
139 2lni_A Stress-induced-phosphop 98.4 1.7E-05 5.7E-10 60.7 15.0 97 101-199 16-112 (133)
140 4f3v_A ESX-1 secretion system 98.4 3.6E-06 1.2E-10 72.6 12.0 189 302-495 18-240 (282)
141 3gw4_A Uncharacterized protein 98.4 5.5E-06 1.9E-10 69.0 13.1 154 44-199 6-175 (203)
142 2vgx_A Chaperone SYCD; alterna 98.4 9.7E-07 3.3E-11 69.4 7.6 101 394-495 20-121 (148)
143 2lni_A Stress-induced-phosphop 98.4 1.4E-05 4.6E-10 61.2 14.2 120 63-185 13-132 (133)
144 2vyi_A SGTA protein; chaperone 98.4 1.6E-05 5.5E-10 60.5 14.5 120 65-187 11-130 (131)
145 3q7a_A Farnesyltransferase alp 98.4 0.00041 1.4E-08 62.0 24.9 176 40-221 64-257 (349)
146 2kck_A TPR repeat; tetratricop 98.3 2.1E-06 7.1E-11 63.5 8.4 101 395-496 6-110 (112)
147 2xcb_A PCRH, regulatory protei 98.3 8.6E-07 2.9E-11 69.2 6.5 94 363-457 21-115 (142)
148 3dss_A Geranylgeranyl transfer 98.3 0.00016 5.6E-09 64.3 20.9 227 4-237 32-306 (331)
149 2c2l_A CHIP, carboxy terminus 98.3 7.8E-06 2.7E-10 72.2 12.2 98 135-234 3-100 (281)
150 4gcn_A Protein STI-1; structur 98.3 3.6E-06 1.2E-10 64.1 8.7 34 430-465 85-118 (127)
151 3q49_B STIP1 homology and U bo 98.3 3.7E-06 1.3E-10 65.0 8.9 102 359-495 8-109 (137)
152 1hxi_A PEX5, peroxisome target 98.3 2E-06 6.8E-11 64.9 6.9 96 400-496 22-118 (121)
153 1p5q_A FKBP52, FK506-binding p 98.3 3.6E-05 1.2E-09 69.9 16.5 132 101-234 147-293 (336)
154 1p5q_A FKBP52, FK506-binding p 98.3 3E-05 1E-09 70.4 15.9 150 45-198 128-292 (336)
155 2dba_A Smooth muscle cell asso 98.2 7.9E-06 2.7E-10 64.0 10.5 66 428-494 65-130 (148)
156 2fbn_A 70 kDa peptidylprolyl i 98.2 3.1E-06 1E-10 70.4 8.1 98 137-236 89-187 (198)
157 2fbn_A 70 kDa peptidylprolyl i 98.2 4.4E-06 1.5E-10 69.5 8.9 154 41-198 15-184 (198)
158 3upv_A Heat shock protein STI1 98.2 7.8E-05 2.7E-09 56.4 14.8 95 103-199 6-100 (126)
159 3upv_A Heat shock protein STI1 98.2 5.5E-05 1.9E-09 57.3 13.8 98 66-165 4-101 (126)
160 2xcb_A PCRH, regulatory protei 98.2 9.4E-06 3.2E-10 63.2 9.3 99 396-495 19-118 (142)
161 4gcn_A Protein STI-1; structur 98.2 5.6E-05 1.9E-09 57.3 13.3 59 69-128 11-69 (127)
162 1elw_A TPR1-domain of HOP; HOP 98.2 0.00014 4.7E-09 54.0 15.4 96 102-199 5-100 (118)
163 1elw_A TPR1-domain of HOP; HOP 98.2 0.00011 3.7E-09 54.5 14.7 99 65-165 3-101 (118)
164 1wao_1 Serine/threonine protei 98.1 2.9E-06 1E-10 81.0 7.1 129 335-499 16-157 (477)
165 4b4t_Q 26S proteasome regulato 98.1 0.00019 6.6E-09 67.7 19.4 98 324-421 134-242 (434)
166 3sz7_A HSC70 cochaperone (SGT) 98.1 0.0001 3.6E-09 58.8 15.0 98 101-200 11-108 (164)
167 3sz7_A HSC70 cochaperone (SGT) 98.1 0.0001 3.5E-09 58.8 14.8 112 135-248 10-121 (164)
168 2xev_A YBGF; tetratricopeptide 98.1 7.9E-06 2.7E-10 62.3 7.8 63 430-494 41-107 (129)
169 1elr_A TPR2A-domain of HOP; HO 98.1 4.4E-05 1.5E-09 58.0 12.0 95 69-164 7-107 (131)
170 1elr_A TPR2A-domain of HOP; HO 98.1 3.8E-05 1.3E-09 58.3 11.7 111 101-214 4-120 (131)
171 2kck_A TPR repeat; tetratricop 98.1 7.1E-05 2.4E-09 54.9 12.7 99 136-236 6-107 (112)
172 3k9i_A BH0479 protein; putativ 98.1 2.6E-06 8.8E-11 63.9 4.6 85 409-494 4-92 (117)
173 3q49_B STIP1 homology and U bo 98.1 0.0001 3.5E-09 56.6 13.8 98 100-199 8-105 (137)
174 4b4t_Q 26S proteasome regulato 98.0 0.00017 5.8E-09 68.1 17.2 167 68-234 57-244 (434)
175 3dss_A Geranylgeranyl transfer 98.0 0.001 3.5E-08 59.2 20.5 152 341-497 126-309 (331)
176 2dba_A Smooth muscle cell asso 98.0 0.00031 1.1E-08 54.6 15.8 95 102-199 29-127 (148)
177 3ro3_A PINS homolog, G-protein 98.0 5.8E-06 2E-10 65.8 5.7 140 325-492 9-158 (164)
178 3ro3_A PINS homolog, G-protein 98.0 6.8E-05 2.3E-09 59.5 11.4 132 103-234 11-157 (164)
179 2hr2_A Hypothetical protein; a 98.0 9.5E-06 3.2E-10 63.0 5.5 113 362-496 13-135 (159)
180 2xev_A YBGF; tetratricopeptide 98.0 7.4E-05 2.5E-09 56.7 10.5 95 367-464 9-110 (129)
181 1hxi_A PEX5, peroxisome target 97.9 9.9E-05 3.4E-09 55.4 10.6 88 109-198 25-112 (121)
182 3rkv_A Putative peptidylprolyl 97.9 2E-05 6.9E-10 62.9 6.9 118 361-495 12-129 (162)
183 3k9i_A BH0479 protein; putativ 97.9 6.5E-05 2.2E-09 56.0 8.4 85 114-199 3-89 (117)
184 2if4_A ATFKBP42; FKBP-like, al 97.8 3.1E-05 1.1E-09 70.3 6.8 98 397-496 232-332 (338)
185 1ihg_A Cyclophilin 40; ppiase 97.8 9.5E-05 3.3E-09 67.9 9.9 121 363-484 226-362 (370)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.0001 3.6E-09 70.0 10.5 128 361-489 269-412 (457)
187 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00014 4.9E-09 65.9 10.2 128 327-457 181-328 (338)
188 1wao_1 Serine/threonine protei 97.7 0.00016 5.4E-09 69.0 10.8 113 44-160 20-134 (477)
189 2kat_A Uncharacterized protein 97.7 7.3E-05 2.5E-09 55.5 6.6 82 413-495 3-85 (115)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00062 2.1E-08 64.6 14.1 94 136-232 317-412 (457)
191 3rkv_A Putative peptidylprolyl 97.7 0.00082 2.8E-08 53.3 12.7 63 137-200 64-126 (162)
192 1ihg_A Cyclophilin 40; ppiase 97.7 0.00074 2.5E-08 61.9 13.7 138 68-227 225-362 (370)
193 3n71_A Histone lysine methyltr 97.6 7.3E-05 2.5E-09 70.9 6.8 123 370-492 319-464 (490)
194 3n71_A Histone lysine methyltr 97.6 0.00066 2.2E-08 64.4 12.5 89 146-234 319-421 (490)
195 1klx_A Cysteine rich protein B 97.6 0.0033 1.1E-07 48.1 14.5 48 149-199 74-125 (138)
196 2l6j_A TPR repeat-containing p 97.6 0.00021 7.3E-09 52.3 7.4 98 324-423 3-106 (111)
197 1klx_A Cysteine rich protein B 97.6 0.0034 1.2E-07 48.1 14.3 113 115-238 9-129 (138)
198 3ma5_A Tetratricopeptide repea 97.6 0.00017 5.7E-09 51.9 6.3 69 426-495 5-73 (100)
199 2l6j_A TPR repeat-containing p 97.5 4.1E-05 1.4E-09 56.3 2.7 89 397-487 6-102 (111)
200 1dce_A Protein (RAB geranylger 97.5 0.001 3.5E-08 64.7 12.6 154 340-496 44-225 (567)
201 1dce_A Protein (RAB geranylger 97.5 0.0086 3E-07 58.2 18.9 172 44-221 43-241 (567)
202 2hr2_A Hypothetical protein; a 97.4 0.0032 1.1E-07 48.8 12.1 61 138-198 59-129 (159)
203 3qwp_A SET and MYND domain-con 97.3 0.00029 9.9E-09 65.8 6.5 82 428-509 329-417 (429)
204 3qww_A SET and MYND domain-con 97.3 0.0002 7E-09 66.7 5.1 101 408-508 311-427 (433)
205 2kat_A Uncharacterized protein 97.1 0.0055 1.9E-07 45.0 10.8 63 65-128 18-80 (115)
206 3bee_A Putative YFRE protein; 97.1 0.002 6.8E-08 45.2 7.8 77 427-506 5-84 (93)
207 1zu2_A Mitochondrial import re 97.1 0.00032 1.1E-08 54.3 3.9 107 337-471 14-132 (158)
208 1na3_A Designed protein CTPR2; 97.1 0.0091 3.1E-07 41.3 11.4 62 137-199 10-71 (91)
209 1na3_A Designed protein CTPR2; 97.1 0.0077 2.6E-07 41.7 11.0 78 102-181 10-87 (91)
210 3ly7_A Transcriptional activat 97.1 0.0026 8.9E-08 56.9 9.9 136 357-495 191-342 (372)
211 2kc7_A BFR218_protein; tetratr 97.0 0.00041 1.4E-08 49.6 3.3 86 403-498 8-96 (99)
212 3ma5_A Tetratricopeptide repea 97.0 0.0051 1.7E-07 43.9 8.9 62 136-198 7-68 (100)
213 1zu2_A Mitochondrial import re 96.8 0.0079 2.7E-07 46.6 9.1 67 45-114 17-93 (158)
214 2kc7_A BFR218_protein; tetratr 96.7 0.0035 1.2E-07 44.6 6.1 63 434-497 6-69 (99)
215 3ly7_A Transcriptional activat 96.6 0.064 2.2E-06 48.0 14.3 63 135-199 276-338 (372)
216 3mkq_A Coatomer beta'-subunit; 96.5 0.067 2.3E-06 54.9 16.5 122 77-231 610-732 (814)
217 3qww_A SET and MYND domain-con 96.4 0.014 4.8E-07 54.4 9.5 87 148-234 310-410 (433)
218 1pc2_A Mitochondria fission pr 96.4 0.0048 1.6E-07 47.2 5.1 71 425-496 29-104 (152)
219 1wy6_A Hypothetical protein ST 96.4 0.063 2.2E-06 39.5 10.5 116 11-133 17-157 (172)
220 3bee_A Putative YFRE protein; 96.2 0.025 8.7E-07 39.5 7.8 78 393-472 4-85 (93)
221 3qwp_A SET and MYND domain-con 96.2 0.033 1.1E-06 51.9 10.9 92 143-234 294-399 (429)
222 3mkq_B Coatomer subunit alpha; 96.1 0.19 6.4E-06 39.5 12.8 130 334-491 14-143 (177)
223 3mkq_A Coatomer beta'-subunit; 96.0 0.026 8.8E-07 58.0 10.4 156 299-491 608-764 (814)
224 2v5f_A Prolyl 4-hydroxylase su 95.9 0.022 7.7E-07 40.8 6.7 64 432-495 9-78 (104)
225 3u64_A Protein TP_0956; tetrat 95.8 0.091 3.1E-06 45.0 10.9 94 83-178 180-284 (301)
226 1wy6_A Hypothetical protein ST 95.7 0.41 1.4E-05 35.3 12.9 67 324-391 90-156 (172)
227 3mkq_B Coatomer subunit alpha; 95.3 0.67 2.3E-05 36.4 13.2 99 76-195 15-113 (177)
228 1pc2_A Mitochondria fission pr 95.2 0.22 7.4E-06 38.1 10.0 80 84-165 16-100 (152)
229 2v5f_A Prolyl 4-hydroxylase su 94.6 0.36 1.2E-05 34.3 9.6 65 170-234 4-74 (104)
230 3u64_A Protein TP_0956; tetrat 94.1 0.9 3.1E-05 39.0 12.1 94 119-214 181-285 (301)
231 1nzn_A CGI-135 protein, fissio 93.8 0.092 3.1E-06 38.6 4.8 67 428-495 35-106 (126)
232 4h7y_A Dual specificity protei 93.5 1.4 4.7E-05 33.4 10.6 30 100-129 12-47 (161)
233 1y8m_A FIS1; mitochondria, unk 93.0 0.65 2.2E-05 34.8 8.3 84 425-510 36-122 (144)
234 4h7y_A Dual specificity protei 92.9 1.3 4.6E-05 33.5 9.9 105 63-169 10-127 (161)
235 1nzn_A CGI-135 protein, fissio 92.6 0.78 2.7E-05 33.7 8.2 65 99-164 33-102 (126)
236 3o48_A Mitochondria fission 1 92.1 0.48 1.6E-05 35.0 6.6 71 426-496 38-111 (134)
237 1v54_E Cytochrome C oxidase po 92.1 0.97 3.3E-05 31.3 7.5 62 82-144 26-87 (109)
238 2ff4_A Probable regulatory pro 90.5 1.2 4E-05 40.8 9.2 73 102-175 172-249 (388)
239 3lvg_A Clathrin heavy chain 1; 90.4 0.00018 6.2E-09 65.6 -15.5 89 359-453 198-287 (624)
240 4b4t_P 26S proteasome regulato 89.6 9.9 0.00034 35.4 14.8 186 304-491 30-246 (445)
241 2ff4_A Probable regulatory pro 89.4 2 6.8E-05 39.3 9.8 109 100-209 111-248 (388)
242 4gns_B Protein CSD3, chitin bi 89.2 2.9 0.0001 41.6 11.2 125 104-232 251-397 (754)
243 4b4t_P 26S proteasome regulato 89.1 14 0.00049 34.3 23.1 190 44-234 30-246 (445)
244 4fhn_B Nucleoporin NUP120; pro 89.0 9.7 0.00033 40.6 15.9 194 294-492 816-1050(1139)
245 1v54_E Cytochrome C oxidase po 89.0 4.3 0.00015 28.2 9.3 48 152-199 26-73 (109)
246 4gns_B Protein CSD3, chitin bi 88.7 2.9 0.0001 41.6 10.8 129 68-198 250-398 (754)
247 2y69_E Cytochrome C oxidase su 87.9 6.1 0.00021 29.1 9.1 62 82-144 69-130 (152)
248 3lvg_A Clathrin heavy chain 1; 87.6 0.0015 5.2E-08 59.7 -11.7 119 288-421 52-170 (624)
249 4fhn_B Nucleoporin NUP120; pro 87.2 13 0.00044 39.7 15.5 128 104-233 902-1048(1139)
250 3rjo_A Endoplasmic reticulum a 86.6 20 0.00068 33.1 21.9 156 4-166 111-297 (419)
251 3ffl_A Anaphase-promoting comp 86.1 3.3 0.00011 32.0 7.5 58 331-388 26-91 (167)
252 2y69_E Cytochrome C oxidase su 86.0 8.6 0.00029 28.4 9.3 48 153-200 70-117 (152)
253 3ffl_A Anaphase-promoting comp 85.5 2.8 9.7E-05 32.4 6.9 115 3-130 22-151 (167)
254 3txn_A 26S proteasome regulato 81.6 31 0.0011 31.3 18.0 224 5-231 23-280 (394)
255 3o48_A Mitochondria fission 1 79.9 16 0.00054 27.0 9.9 66 99-164 38-106 (134)
256 3esl_A Checkpoint serine/threo 79.2 11 0.00036 30.3 8.2 54 408-461 92-148 (202)
257 4b4t_R RPN7, 26S proteasome re 79.1 32 0.0011 31.8 12.9 97 103-199 133-236 (429)
258 4b4t_R RPN7, 26S proteasome re 76.3 26 0.00091 32.3 11.5 61 173-233 133-195 (429)
259 1zbp_A Hypothetical protein VP 74.9 9 0.00031 32.4 7.0 52 77-129 8-59 (273)
260 2uwj_G Type III export protein 74.3 19 0.00064 24.9 7.7 77 44-131 20-98 (115)
261 1zbp_A Hypothetical protein VP 74.1 14 0.00047 31.3 7.9 51 113-164 9-59 (273)
262 2p58_C Putative type III secre 73.4 20 0.00068 24.8 8.5 77 44-131 21-99 (116)
263 2uwj_G Type III export protein 73.0 20 0.0007 24.7 7.4 87 79-176 19-107 (115)
264 2p58_C Putative type III secre 72.2 22 0.00074 24.7 8.1 87 79-176 20-108 (116)
265 4ady_A RPN2, 26S proteasome re 71.4 97 0.0033 31.9 22.5 295 70-423 343-657 (963)
266 1qsa_A Protein (soluble lytic 71.1 80 0.0027 30.8 24.8 117 304-423 228-347 (618)
267 3esl_A Checkpoint serine/threo 68.9 43 0.0015 26.8 9.6 49 82-130 95-144 (202)
268 1y8m_A FIS1; mitochondria, unk 68.9 34 0.0012 25.6 11.8 66 99-164 37-105 (144)
269 2jy5_A Ubiquilin-1; UBA, alter 67.0 14 0.00047 22.0 4.7 39 15-53 10-48 (52)
270 2bwb_A Ubiquitin-like protein 65.0 11 0.00039 21.7 4.0 38 16-53 6-43 (46)
271 3kae_A CDC27, possible protein 63.3 51 0.0017 25.6 10.4 90 2-98 3-94 (242)
272 1qsa_A Protein (soluble lytic 63.1 1.2E+02 0.004 29.7 31.0 154 3-165 8-167 (618)
273 3lpz_A GET4 (YOR164C homolog); 61.6 85 0.0029 27.6 21.0 164 106-317 40-214 (336)
274 4a1g_A Mitotic checkpoint seri 61.3 48 0.0016 25.2 7.9 83 47-135 52-135 (152)
275 2wvi_A Mitotic checkpoint seri 61.0 44 0.0015 25.8 7.8 49 413-461 78-129 (164)
276 4ets_A Ferric uptake regulatio 60.7 15 0.00052 28.4 5.3 70 47-117 14-85 (162)
277 2wpv_A GET4, UPF0363 protein Y 60.0 88 0.003 27.3 17.9 106 350-455 82-215 (312)
278 4ady_A RPN2, 26S proteasome re 60.0 1.6E+02 0.0055 30.3 33.4 211 299-517 499-722 (963)
279 2knz_A Ubiquilin-4; cytoplasm, 55.8 18 0.00061 21.6 3.9 39 16-54 10-48 (53)
280 2dah_A Ubiquilin-3; UBA domain 55.0 20 0.00069 21.5 4.0 41 15-55 7-47 (54)
281 2ion_A PDCD4, programmed cell 54.6 68 0.0023 24.4 8.2 64 104-168 12-77 (152)
282 2d2s_A Exocyst complex compone 54.5 77 0.0026 26.3 8.9 21 108-128 25-45 (235)
283 1wdy_A 2-5A-dependent ribonucl 53.9 52 0.0018 27.7 8.4 23 372-394 191-213 (285)
284 4fke_A Aminopeptidase N; zinc 53.3 2.1E+02 0.0071 29.6 18.2 48 148-198 738-785 (909)
285 1vej_A Riken cDNA 4931431F19; 52.6 23 0.00077 23.0 4.1 40 15-54 27-66 (74)
286 2d2s_A Exocyst complex compone 52.6 99 0.0034 25.6 9.7 91 141-234 23-119 (235)
287 3kae_A CDC27, possible protein 52.4 62 0.0021 25.1 7.0 53 437-489 71-140 (242)
288 2xig_A Ferric uptake regulatio 52.3 73 0.0025 24.0 8.1 22 109-130 34-55 (150)
289 3hra_A Ankyrin repeat family p 52.2 31 0.0011 27.3 6.3 159 296-464 8-174 (201)
290 3lpz_A GET4 (YOR164C homolog); 51.9 1.3E+02 0.0043 26.6 23.9 25 359-383 135-159 (336)
291 4a1g_A Mitotic checkpoint seri 51.4 77 0.0026 24.0 9.2 54 118-171 82-136 (152)
292 1wr1_B Ubiquitin-like protein 50.4 18 0.0006 22.2 3.2 38 16-53 16-53 (58)
293 1wgl_A TOLL-interacting protei 49.8 42 0.0014 20.5 5.1 47 17-65 9-57 (59)
294 3ltm_A Alpha-REP4; protein eng 49.5 98 0.0033 24.6 19.7 172 63-254 30-201 (211)
295 2fe3_A Peroxide operon regulat 49.5 76 0.0026 23.8 7.5 12 118-129 38-49 (145)
296 2nsz_A Programmed cell death p 49.2 75 0.0026 23.3 9.6 23 105-127 11-33 (129)
297 2dna_A Unnamed protein product 49.0 21 0.0007 22.6 3.4 41 16-56 18-58 (67)
298 3eyy_A Putative iron uptake re 49.0 73 0.0025 23.9 7.4 57 58-116 11-67 (145)
299 1k1a_A B-cell lymphoma 3-encod 47.7 32 0.0011 28.2 5.8 147 74-229 14-170 (241)
300 2cwb_A Chimera of immunoglobul 47.3 34 0.0012 24.1 4.7 39 15-53 64-102 (108)
301 3txn_A 26S proteasome regulato 47.2 1.6E+02 0.0056 26.6 17.9 165 68-233 21-208 (394)
302 2ion_A PDCD4, programmed cell 47.1 91 0.0031 23.6 8.0 65 68-133 11-77 (152)
303 2ko4_A Mediator of RNA polymer 46.8 28 0.00097 22.6 3.8 41 415-455 23-63 (81)
304 3jxi_A Vanilloid receptor-rela 46.3 41 0.0014 28.1 6.4 190 294-489 6-248 (260)
305 2fe3_A Peroxide operon regulat 46.1 91 0.0031 23.3 7.7 60 58-118 14-73 (145)
306 3t8k_A Uncharacterized protein 45.3 77 0.0026 24.9 7.4 156 77-236 14-181 (186)
307 2wvi_A Mitotic checkpoint seri 45.0 1E+02 0.0036 23.7 9.3 54 118-171 77-131 (164)
308 3c1d_A Protein ORAA, regulator 44.9 1E+02 0.0035 23.5 11.1 51 81-133 45-95 (159)
309 3eiq_C Programmed cell death p 43.4 1.8E+02 0.0061 25.9 12.2 214 2-223 55-305 (358)
310 2qx5_A Nucleoporin NIC96; mRNA 43.0 2.5E+02 0.0087 27.6 21.2 81 141-232 299-382 (661)
311 2wpv_A GET4, UPF0363 protein Y 42.4 1.7E+02 0.0059 25.4 21.5 24 294-317 192-215 (312)
312 2nsz_A Programmed cell death p 41.7 1E+02 0.0034 22.6 9.4 64 69-133 10-75 (129)
313 1mzb_A Ferric uptake regulatio 41.5 83 0.0028 23.2 6.6 11 119-129 36-46 (136)
314 4aez_C MAD3, mitotic spindle c 40.9 84 0.0029 25.7 6.8 83 47-135 101-184 (223)
315 3bqo_A Telomeric repeat-bindin 39.4 77 0.0026 25.2 6.0 47 411-457 94-146 (211)
316 2xdt_A Endoplasmic reticulum a 38.9 3.4E+02 0.012 27.9 21.4 37 5-41 595-633 (897)
317 2r9g_A AAA ATPase, central reg 38.7 1.5E+02 0.0051 23.7 8.9 31 149-180 27-57 (204)
318 3eyy_A Putative iron uptake re 37.8 80 0.0027 23.7 6.0 33 153-185 34-66 (145)
319 3ltj_A Alpharep-4; protein eng 37.5 1.5E+02 0.0051 23.3 19.0 154 63-233 25-178 (201)
320 1k1a_A B-cell lymphoma 3-encod 36.7 1.7E+02 0.0057 23.6 8.8 184 294-488 10-205 (241)
321 3bu8_A Telomeric repeat-bindin 36.6 1.6E+02 0.0053 23.9 7.4 48 83-130 89-143 (235)
322 2w57_A Ferric uptake regulatio 36.4 96 0.0033 23.4 6.3 10 155-164 36-45 (150)
323 2o03_A Probable zinc uptake re 36.1 76 0.0026 23.2 5.6 47 71-117 15-61 (131)
324 2b7e_A PRE-mRNA processing pro 35.9 39 0.0013 20.7 3.1 29 118-146 3-31 (59)
325 4aez_C MAD3, mitotic spindle c 35.3 79 0.0027 25.8 5.8 52 342-393 131-183 (223)
326 1ug3_A EIF4GI, eukaryotic prot 35.3 1.6E+02 0.0055 26.0 8.5 94 293-387 14-112 (339)
327 2fu4_A Ferric uptake regulatio 35.1 93 0.0032 20.2 6.7 57 59-116 10-67 (83)
328 2xig_A Ferric uptake regulatio 34.7 1.5E+02 0.005 22.4 8.0 58 197-255 18-75 (150)
329 3bge_A Predicted ATPase; struc 34.4 1.8E+02 0.006 23.2 7.8 22 149-170 20-41 (201)
330 1mzb_A Ferric uptake regulatio 34.4 1.2E+02 0.004 22.3 6.4 61 162-223 9-70 (136)
331 1z5h_A Tricorn protease intera 34.4 3.5E+02 0.012 27.3 11.7 47 169-217 647-693 (780)
332 1ug3_A EIF4GI, eukaryotic prot 34.3 1.6E+02 0.0055 26.0 8.3 25 69-93 14-38 (339)
333 4ets_A Ferric uptake regulatio 34.2 1.1E+02 0.0038 23.4 6.4 44 142-185 38-83 (162)
334 2fu4_A Ferric uptake regulatio 34.0 97 0.0033 20.1 6.9 58 92-150 8-66 (83)
335 3mwm_A ZUR, putative metal upt 32.4 73 0.0025 23.7 5.0 46 71-116 18-63 (139)
336 1rdt_E LXXLL motif coactivator 32.1 18 0.00062 17.2 0.9 20 498-517 3-22 (26)
337 1s6c_A KV4 potassium channel-i 32.1 1.7E+02 0.0058 22.4 11.0 25 463-487 156-180 (183)
338 3l6a_A Eukaryotic translation 32.0 1.8E+02 0.0062 26.0 8.2 65 293-358 15-81 (364)
339 2rfa_A Transient receptor pote 31.3 1.6E+02 0.0056 23.6 7.7 85 403-489 126-220 (232)
340 3se6_A Endoplasmic reticulum a 31.3 4.7E+02 0.016 27.2 20.8 38 4-41 662-701 (967)
341 3aji_A 26S proteasome non-ATPa 31.1 1.5E+02 0.0053 23.7 7.5 180 294-488 7-194 (231)
342 3ctd_A Putative ATPase, AAA fa 30.3 2.2E+02 0.0074 23.0 9.2 30 149-178 48-77 (213)
343 2w57_A Ferric uptake regulatio 29.0 1.4E+02 0.0049 22.4 6.2 63 160-223 6-69 (150)
344 2keb_A DNA polymerase subunit 28.6 1.4E+02 0.005 20.5 7.0 32 84-115 27-58 (101)
345 3ygs_P Procaspase 9; apoptosis 27.6 1.5E+02 0.0051 20.3 5.9 36 116-155 52-87 (97)
346 3mwm_A ZUR, putative metal upt 27.1 1.2E+02 0.0041 22.4 5.4 46 331-376 19-64 (139)
347 3hra_A Ankyrin repeat family p 26.9 55 0.0019 25.8 3.8 19 9-27 10-28 (201)
348 2ijq_A Hypothetical protein; s 26.8 2.2E+02 0.0074 21.9 8.4 50 80-129 46-103 (161)
349 2rfa_A Transient receptor pote 26.4 2.1E+02 0.0073 22.9 7.5 53 179-232 159-220 (232)
350 2keb_A DNA polymerase subunit 25.7 1.7E+02 0.0057 20.2 7.1 31 155-185 28-58 (101)
351 3l6a_A Eukaryotic translation 25.6 3.6E+02 0.012 24.0 10.2 25 69-93 15-39 (364)
352 2o03_A Probable zinc uptake re 25.4 1.4E+02 0.0047 21.8 5.4 42 107-148 16-57 (131)
353 1u60_A Probable glutaminase YB 25.3 3.3E+02 0.011 23.5 9.2 20 21-40 83-102 (310)
354 2zu6_B Programmed cell death p 24.0 3.5E+02 0.012 23.4 11.0 188 67-256 4-252 (307)
355 3twr_A Tankyrase-2; ankyrin re 23.3 80 0.0028 23.8 4.0 16 213-228 112-127 (165)
356 3jxi_A Vanilloid receptor-rela 22.9 2.6E+02 0.0088 22.9 7.5 52 431-487 94-161 (260)
357 1zl8_A LIN-7; heterodimer, alp 22.9 1.2E+02 0.0042 17.7 3.6 45 442-488 7-51 (53)
358 4gq2_M Nucleoporin NUP120; bet 22.6 4E+02 0.014 27.6 10.0 48 103-150 899-950 (950)
359 3f3f_C Nucleoporin NUP85; stru 22.5 3E+02 0.01 26.3 8.0 51 138-190 518-568 (570)
360 3t8k_A Uncharacterized protein 22.5 2.7E+02 0.0094 21.6 8.8 94 297-395 10-109 (186)
361 3mv2_A Coatomer subunit alpha; 22.3 3.9E+02 0.013 23.3 12.3 29 430-458 209-237 (325)
362 1wty_A Hypothetical protein TT 22.0 62 0.0021 23.3 2.8 75 46-128 4-79 (119)
363 2f6m_A Suppressor protein STP2 22.0 1.5E+02 0.0051 18.6 4.0 45 69-114 5-49 (65)
364 2yru_A Steroid receptor RNA ac 21.7 1.6E+02 0.0053 21.2 4.7 41 194-234 49-89 (118)
365 2rg8_A Programmed cell death p 21.2 2.2E+02 0.0076 21.8 5.9 94 294-387 14-110 (165)
366 2p1h_A APAF-1, apoptotic prote 21.1 2E+02 0.0067 19.4 6.8 58 86-151 25-82 (94)
367 2ijq_A Hypothetical protein; s 20.8 2.9E+02 0.0098 21.2 8.3 49 150-198 46-102 (161)
368 1wdy_A 2-5A-dependent ribonucl 20.7 2.6E+02 0.0089 23.1 7.2 20 295-314 7-26 (285)
369 2etb_A Transient receptor pote 20.4 1.3E+02 0.0044 24.8 5.0 54 74-128 7-70 (256)
370 3kea_A K1L; tropism, ANK repea 20.0 3.9E+02 0.013 22.4 8.7 144 295-453 33-183 (285)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-37 Score=311.56 Aligned_cols=455 Identities=10% Similarity=-0.033 Sum_probs=313.9
Q ss_pred ccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010057 13 KYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF 89 (519)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 89 (519)
+.|....+...+..++. ++...|+.++..+ |++++|+++|+.+.. ..|+..++..++.+|.+.|++++|..+|
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34555555555555432 3556666665543 667777777766642 2456666666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHhcCCHHH
Q 010057 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK---------------ECYPTIVSYTAYMKILFLNDRVKE 154 (519)
Q Consensus 90 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~~~~~~ 154 (519)
+.+... .++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 666433 456666777777777777777777777642211 223356667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHH--------------------------------------HHHHHHHHcCCHHHHHHHHHH
Q 010057 155 ATDVYKEMIQRGLPPNCYTYT--------------------------------------VLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~--------------------------------------~li~~~~~~~~~~~a~~~~~~ 196 (519)
|.++|++|.+.+.. +...+. .++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 77777776654311 222222 224455566667777777766
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccch
Q 010057 197 MQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDN 276 (519)
Q Consensus 197 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (519)
+.+. .++..++..++.+|.+.|++++|..+|+++.+.+.. +...+..+...+...++.+.....+..
T Consensus 298 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~---------- 364 (597)
T 2xpi_A 298 INGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISND---------- 364 (597)
T ss_dssp STTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHH----------
T ss_pred hhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHH----------
Confidence 6553 456667777777777777777777777776655432 233344444444444444433221110
Q ss_pred hhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC
Q 010057 277 DAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (519)
...........+..+...|.+.|++++|..+|+.+.... ..+..+|+.++..|.+.|++++|+++|+++.+.+
T Consensus 365 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 365 -----LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp -----HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred -----HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 001111233456677889999999999999999988753 2357799999999999999999999999999875
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC------CCC--c
Q 010057 357 NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED------QKC--T 428 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~--~ 428 (519)
+.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+. .|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 4577889999999999999999999999999865 457889999999999999999999999987543 455 6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
.+|..++.+|.+.|++++|+++|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.++.|+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 799999999999999999999999999885 5578999999999999999999999999999987764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-36 Score=297.93 Aligned_cols=423 Identities=10% Similarity=-0.069 Sum_probs=346.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|....+...+..+. .++...|+.++..|.+.|++++|..+|+.|.+. .|+..++..++.+|.+.|++++|..
T Consensus 66 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 355555666665442 478899999999999999999999999999864 5788999999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHcCCH
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR---------------GLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~~~~ 187 (519)
+|+++... +++..+++.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988643 678999999999999999999999999954322 3345789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH--------------------------------------HHHHHHHHhcCChHHHHHHH
Q 010057 188 EEALEIFSKMQEAGVQPDKAAC--------------------------------------NILIEKCCKAGETRTIILIL 229 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~--------------------------------------~~li~~~~~~g~~~~a~~~~ 229 (519)
++|.++|++|.+.+.. +...+ +.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999876421 23333 33366777999999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHH
Q 010057 230 RYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAI 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (519)
+++.+. .++...+..+...+...++.+.....+... ..........+..++..+...|+.++|
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKI---------------LEIDPYNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHCTTCCTTHHHHHHHHHHHTCHHHH
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 998775 467788888888888888776554322111 111123456677888999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
..+++.+.... ..+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+.+.+.
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 359 YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998543 4478889999999999999999999999998754 346778999999999999999999999999987
Q ss_pred CCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--
Q 010057 390 GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRK----GIHPS-- 462 (519)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-- 462 (519)
+ +.+..++..++.+|.+.|++++|.++|+++.+. +.++.+|+.++.+|.+.|++++|+++|++|.+. +..|+
T Consensus 437 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 437 F-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp T-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred C-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 5 568889999999999999999999999998765 456889999999999999999999999999887 67787
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 463 LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 463 ~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..+|..+..+|.+.|++++|.++++++.++.|+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 679999999999999999999999999888654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-32 Score=262.70 Aligned_cols=203 Identities=15% Similarity=0.237 Sum_probs=164.3
Q ss_pred HHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hhh
Q 010057 50 WLFFNWVSRSRGFNHDR-FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD---------VDG 119 (519)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 119 (519)
..+.+.+ ++.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++.
T Consensus 10 e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 10 ENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344455 455555544 35788888888888888999999888888888888889988888887654 577
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 120 AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 120 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888898899999999999899999999999888888888988999999999888999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhh
Q 010057 200 AGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKV 253 (519)
Q Consensus 200 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (519)
.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..++..++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888889889999999999889999999999998888888888888888877764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.3e-32 Score=259.38 Aligned_cols=207 Identities=16% Similarity=0.239 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------H
Q 010057 83 SSMKYVFELMQEKGINIDAV-TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR---------V 152 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~ 152 (519)
..++.+.+.+.+.+..+++. .++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45566777888877766554 6899999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHH
Q 010057 233 KENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSL 312 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (519)
.+.|
T Consensus 167 ~~~G---------------------------------------------------------------------------- 170 (501)
T 4g26_A 167 VESE---------------------------------------------------------------------------- 170 (501)
T ss_dssp HHTT----------------------------------------------------------------------------
T ss_pred HhcC----------------------------------------------------------------------------
Confidence 7754
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 010057 313 LSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL 373 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (519)
+.||..+|+++|.+|++.|+.++|.++|++|++.+..|+..||+.++..|+..
T Consensus 171 --------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 --------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp --------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred --------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 56888899999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.5e-27 Score=219.58 Aligned_cols=371 Identities=15% Similarity=0.092 Sum_probs=214.4
Q ss_pred HhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHh----cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChh
Q 010057 9 YKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLK----THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS 83 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 83 (519)
..+.+.|++++|++.++++ ...|+......++. ..|++++|..+++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHH
Confidence 3445556666666666554 33344333322222 2356666666665554332 445556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
+|...|+.+.+.... +..+|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666554211 34455666666666666666666666655542 22 334455555555566666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 010057 163 IQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 163 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
.+.. +-+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++...+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----- 234 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP----- 234 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-----
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----
Confidence 5542 2234555566666666666666666666665532 12344555555555556666666555554433211
Q ss_pred HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010057 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322 (519)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (519)
T Consensus 235 -------------------------------------------------------------------------------- 234 (388)
T 1w3b_A 235 -------------------------------------------------------------------------------- 234 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHH
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLI 402 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (519)
.+..++..+...|...|++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|.+.++.+.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 134456666677777777777777777777654 2345567777777777777777777777777653 44556666677
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGLEK 475 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~~~ 475 (519)
..+.+.|++++|.+.++++.+..| +..+|..+..+|.+.|++++|++.|+++.+. .|+ ...+..+...+..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHH
Confidence 777777777777777766655433 3556677777777777777777777777654 333 3444444444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.1e-26 Score=216.90 Aligned_cols=359 Identities=14% Similarity=0.061 Sum_probs=284.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
.|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|..
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 378888888887776443 4456667777777788888888888887777653 3367788888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 010057 123 IWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGV 202 (519)
Q Consensus 123 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 202 (519)
.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 888877652 2245567888888888888888888888887752 2234566667777777888888888888877652
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhH
Q 010057 203 QPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282 (519)
Q Consensus 203 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (519)
+-+..+|..+...+.+.|++++|...|+++.+.++
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------- 200 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--------------------------------------------- 200 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------------------------------
Confidence 22456777888888888888888888877665332
Q ss_pred HhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH
Q 010057 283 TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA 362 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (519)
.+...+..+...+...|++++|+..|++..+.. +.+..+
T Consensus 201 ----------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 201 ----------------------------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ----------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 134456677778889999999999999988764 335678
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~ 441 (519)
+..+..++.+.|++++|.+.++.+.+.. +.++..+..+...+.+.|++++|.+.|+++.+. +++..+|+.+...+.+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999875 445678899999999999999999999988765 45678999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...++++.++.|+
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998763 445778999999999999999999999999988775
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=199.03 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=109.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcch
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPK 378 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 378 (519)
.+...|+++.|...++....... .+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 34444444444445544443321 133455555566666666666666666666543 2234455566666666666666
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC-------chhHHHHHHHHHh---cCCHHHHH
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC-------TATYTALIGVYFS---AGSADKAL 448 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~li~~~~~---~g~~~~A~ 448 (519)
|...+..+.+.. +.+...+..+...+...|++++|.+.++.+....|+ ...|..+..+|.. .|++++|+
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 666666666543 234455566666666666666666666655432111 2256666666666 66666666
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 449 KIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 449 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+.|+++.+.. +.+..++..+...|.+.|++++|...++++.++.|+
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 6666666552 233455566666666666666666666666665553
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.7e-22 Score=190.57 Aligned_cols=341 Identities=14% Similarity=0.123 Sum_probs=243.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.+...+..+...+.+.|++++|..+|+.+.+... .+..+|..+..++...|++++|...|+++.+.+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 45667788888888888889999888888887532 3678888888888888889999888888877642 257788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVL------------MEYLVRAGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
..+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...|+.+.+.. +.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 88888888999998888888875 3443 455544 334778888888888888887753 3366
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhcc
Q 010057 207 AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDI 286 (519)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (519)
.++..+..+|.+.|++++|...++.+.+...
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------------------------- 208 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKN------------------------------------------------- 208 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 7888888888888888888888887665321
Q ss_pred CCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHH
Q 010057 287 EGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLAL 366 (519)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (519)
.+..++..+...|...|++++|+..|+.+.+.. +.+...+..+
T Consensus 209 ------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 209 ------------------------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp ------------------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 133445556666666666666666666666442 1122223333
Q ss_pred ------------HHHHHhcCCcchHHHHHHHHHhcCCCcc-----chhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCc
Q 010057 367 ------------IGILIKLNTFPKVAEIVEEMTKAGHSLG-----VYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCT 428 (519)
Q Consensus 367 ------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 428 (519)
...+.+.|++++|...+..+.+.. |+ ...+..+...+.+.|++++|.+.++.+.+. +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 677788888888888888887753 33 336677778888888888888888876554 3357
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHH------------HHHhcC-----ChhHHHHHHHH-h
Q 010057 429 ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLA------------GLEKLG-----RVSDAEIYRKE-K 489 (519)
Q Consensus 429 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~------------~~~~~g-----~~~~a~~~~~~-~ 489 (519)
..|..+..+|...|++++|.+.|+++.+. .|+ ...+..+.. .|...| ..+++.+.+++ .
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH
Confidence 78888888888888888888888888875 454 344444442 233444 55677777775 6
Q ss_pred cccCccccc
Q 010057 490 KSIQADALS 498 (519)
Q Consensus 490 ~~~~~~~~~ 498 (519)
.+..|+...
T Consensus 408 l~~~pd~~~ 416 (450)
T 2y4t_A 408 LQWHPDNFQ 416 (450)
T ss_dssp HHSCGGGCC
T ss_pred HHhCCCCCC
Confidence 677777554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.5e-21 Score=185.03 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=167.0
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHh---cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010057 19 SAQDLLKNL-PIKWD-SYTVNQVLK---THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQ 93 (519)
Q Consensus 19 ~a~~~~~~~-~~~p~-~~~~~~ll~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 93 (519)
.+...|.+. ...|+ ...+..+.. ..|++++|+++|+.+.+.. +.+..+|..+...+...|++++|...|+.+.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444 33343 344444332 3499999999999987543 5678999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-h---hhHHHHH------------HHHHhcCCHHHHHH
Q 010057 94 EKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT-I---VSYTAYM------------KILFLNDRVKEATD 157 (519)
Q Consensus 94 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~---~~~~~li------------~~~~~~~~~~~a~~ 157 (519)
+.+.. +..++..+..+|.+.|++++|...|+++.+.. |+ . ..+..+. ..+...|++++|..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87543 68899999999999999999999999998763 43 3 5665554 44889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 158 VYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 158 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.|+++.+.. +.+..++..+..+|.+.|++++|.++|+.+.+.. +.+..++..+..+|...|++++|...++.+.+..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999863 4478899999999999999999999999998753 3467899999999999999999999999988643
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-21 Score=190.42 Aligned_cols=401 Identities=7% Similarity=-0.037 Sum_probs=296.1
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
+......+.+.|++++|+..|+++ ...|++..+..+...+ |++++|++.|+.+.+.. +.+...|..+..++.+.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHH
Confidence 345556677888999999999887 4457777766655444 88999999888886543 55677888888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH---------------------------------
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEE--------------------------------- 126 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------------------------- 126 (519)
|++++|...|+.+.+.+. ++......++..+........+.+.+..
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999988887653 2333333333333332222222222211
Q ss_pred --HHHCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHH
Q 010057 127 --MKLKEC---------YPTIVSYTAYMKILFL---NDRVKEATDVYKEMIQ-----RGL--------PPNCYTYTVLME 179 (519)
Q Consensus 127 --m~~~~~---------~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~ 179 (519)
+..... +.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111000 1124455555554554 8999999999999887 311 123567888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhH
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS 259 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (519)
.+...|++++|...|+.+.+.. |+..++..+..++...|+++.|...++.+.+.....
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------- 303 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-------------------- 303 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC--------------------
Confidence 9999999999999999998764 447788899999999999999999999988754321
Q ss_pred HHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccC
Q 010057 260 LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHR 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (519)
...+..+...+...|+++.|...+......... +...+..+...+...|
T Consensus 304 ------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 304 ------------------------------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYREN 352 (514)
T ss_dssp ------------------------------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTT
T ss_pred ------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcC
Confidence 113344566778889999999999988765433 5667888999999999
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC-Ccc----chhHHHHHHHHhc---CCCc
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH-SLG----VYLGALLIHRLGS---ARRP 411 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~ 411 (519)
++++|+..|+.+.+.. +.+...+..+...+...|++++|...+..+.+... .++ ...+..+...+.. .|++
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999999999998764 33567888999999999999999999999986431 112 3388889999999 9999
Q ss_pred chHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 010057 412 VPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSL 463 (519)
Q Consensus 412 ~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (519)
++|.+.++.+.... .+..+|..+..+|.+.|++++|.+.|++..+. .|+.
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 99999999876653 45778899999999999999999999999987 4553
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3.3e-21 Score=189.72 Aligned_cols=387 Identities=10% Similarity=0.018 Sum_probs=209.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|++.|+.+.+.. +.+...|..+...|.+.|++++|.+.++.+.+.+.. +...+..+..++...|++++|...
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666555332 345555666666666666666666666665554322 455555566666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHH-------------------------
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQR------GLPPNCY------------------------- 172 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~------------------------- 172 (519)
|+.+ .. .|+. .+..+..+...+....|...++++... ...|+..
T Consensus 116 ~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 6422 11 1111 111122233333334444444444321 0011111
Q ss_pred -----HHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 173 -----TYTVLMEYLV--------RAGKYEEALEIFSKMQEAGVQPD--------KAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 173 -----~~~~li~~~~--------~~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
....+...+. ..+++++|..+++.+.+. .|+ ..++..+...+...|+++.|...++.
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 1111111111 123566666666666653 222 22345555566666666666666666
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
..+.... .. .+..+...+...|+++.|..
T Consensus 269 ~~~~~~~--~~-------------------------------------------------~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 269 SINLHPT--PN-------------------------------------------------SYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHCCC--HH-------------------------------------------------HHHHHHHHTCCSSCCHHHHH
T ss_pred HHhcCCC--ch-------------------------------------------------HHHHHHHHHHHhcCHHHHHH
Confidence 6554322 11 11123333445566666666
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
.+........ .+..++..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 298 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666554432 245566666777777777777777777776654 2234566677777777777777777777777654
Q ss_pred CccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-------CchhHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 010057 392 SLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-------CTATYTALIGVYFSA----------GSADKALKIYKTM 454 (519)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 454 (519)
+.+...+..+...+...|++++|.+.|+++.+..| ....+..+..+|.+. |++++|+..|++.
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 34555667777777777777777777776543311 112234445566666 7777777777777
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 455 CRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 455 ~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.. +.+...+..+..+|.+.|++++|.+.++++.++.|+
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 7663 334566777777777777777777777777776654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.6e-18 Score=161.01 Aligned_cols=169 Identities=9% Similarity=0.011 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH----
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA---- 399 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 399 (519)
+...+..+...+...|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 34556666667777778888888887777654 4456667777777888888888888888777654 22222222
Q ss_pred --------HHHHHHhcCCCcchHHHHhhhCCcCCCCc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 010057 400 --------LLIHRLGSARRPVPAAKIFSLLPEDQKCT-----ATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTF 466 (519)
Q Consensus 400 --------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 466 (519)
.+...+.+.|++++|.+.++.+.+..|+. ..|..+..+|.+.|++++|++.+++..+.. +.+..++
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 22555778888888888888776544432 235567788888999999999999888763 3467788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 467 NVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 467 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..+...+...|++++|...++++.++.|+
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 88888889999999999999998888765
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=6.3e-18 Score=156.95 Aligned_cols=314 Identities=14% Similarity=0.115 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
+..+..+...+...|++++|...|+.+.+.... +..++..+...+...|++++|...|++..+.. +.+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 344555556666666666666666666554322 45566666666666666666666666665542 1144556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPP----NCYTYTVL------------MEYLVRAGKYEEALEIFSKMQEAGVQPDKAAC 209 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 209 (519)
+...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++.+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 66666666666666666653 23 22233333 355566666666666666665542 2344556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCC
Q 010057 210 NILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGP 289 (519)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (519)
..+..++...|+++.|...++...+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------------------------- 185 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS---------------------------------------------------- 185 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS----------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------------------------------------------
Confidence 6666666666666666666665544321
Q ss_pred CcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHH------
Q 010057 290 LSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAY------ 363 (519)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 363 (519)
.+...+..+...+...|++++|...|+...+... .+...+
T Consensus 186 ---------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~ 231 (359)
T 3ieg_A 186 ---------------------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQV 231 (359)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred ---------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHH
Confidence 1223344444445555555555555555544321 111111
Q ss_pred ------HHHHHHHHhcCCcchHHHHHHHHHhcCCCccc----hhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHH
Q 010057 364 ------LALIGILIKLNTFPKVAEIVEEMTKAGHSLGV----YLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYT 432 (519)
Q Consensus 364 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 432 (519)
..+...+.+.|++++|...++.+.+... .+. ..+..+...+...|++++|.+.++...+.. .++..|.
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 2235567778888888888888877542 122 224446677888888888888888776643 3577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 010057 433 ALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL 473 (519)
Q Consensus 433 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~ 473 (519)
.+..+|.+.|++++|.+.|++..+. .|+ ...+..+..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999999877 455 44444444443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=2.2e-18 Score=169.59 Aligned_cols=377 Identities=11% Similarity=0.027 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+.+.|++++|...|+.+.+.... +...|..+..++...|++++|.+.|++..+.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456788888999999999999999999987533 78899999999999999999999999998874 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHH------
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GVQPDKAACNILI------ 213 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li------ 213 (519)
+...|++++|...|+.+.. .|+. ....+..+...+...+|...++.+... ...|+.......+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999964322 2332 222344555666677888888887442 2233333322211
Q ss_pred ------------------------HHHH--------hcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHH
Q 010057 214 ------------------------EKCC--------KAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLL 261 (519)
Q Consensus 214 ------------------------~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (519)
..+. ..|++++|..+++.+.+........... ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~-~~------------- 243 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN-AA------------- 243 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH-HH-------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH-HH-------------
Confidence 1111 1134555666665555433221100000 00
Q ss_pred hhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCCh
Q 010057 262 WQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRR 341 (519)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 341 (519)
..+..+...+...|+++.|...+....... |+...+..+...+...|++
T Consensus 244 -----------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 244 -----------------------------LALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp -----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred -----------------------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 022334557788999999999999988765 4477888999999999999
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 342 DGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998765 3467789999999999999999999999999865 456778889999999999999999999988
Q ss_pred CcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhc----------CChhHHHHH
Q 010057 422 PEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIH-PS----LGTFNVLLAGLEKL----------GRVSDAEIY 485 (519)
Q Consensus 422 ~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l~~~~~~~----------g~~~~a~~~ 485 (519)
.+.. .+...|..+...|...|++++|++.|+++.+..-. ++ ...+.....++... |++++|...
T Consensus 371 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 7654 45778999999999999999999999998876311 11 11133445667777 999999999
Q ss_pred HHHhcccCccc
Q 010057 486 RKEKKSIQADA 496 (519)
Q Consensus 486 ~~~~~~~~~~~ 496 (519)
++++.+..|+.
T Consensus 451 ~~~a~~~~p~~ 461 (537)
T 3fp2_A 451 LTKACELDPRS 461 (537)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhCCCC
Confidence 99999887753
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-17 Score=153.34 Aligned_cols=270 Identities=11% Similarity=-0.046 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 99 IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345566667777777777777777777776653 2245566667777777777777777777777652 23556677777
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCch
Q 010057 179 EYLVRAG-KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADEN 257 (519)
Q Consensus 179 ~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (519)
..+...| ++++|...|+...+.. +.+...+..+..++...|++++|...++...+...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------- 156 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-------------------- 156 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--------------------
Confidence 7777777 7777777777776643 22455677777777777777777777776555221
Q ss_pred hHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Q 010057 258 DSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD 337 (519)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (519)
.+...+..+...|..
T Consensus 157 -----------------------------------------------------------------~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 157 -----------------------------------------------------------------GCHLPMLYIGLEYGL 171 (330)
T ss_dssp -----------------------------------------------------------------TCSHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------ccHHHHHHHHHHHHH
Confidence 123445567777888
Q ss_pred cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC--------CccchhHHHHHHHHhcCC
Q 010057 338 HRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH--------SLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 409 (519)
.|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+..- +.....+..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887764 34566777888888888888888888888775310 122334444555555555
Q ss_pred CcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 410 RPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
++++|.+.+++..+. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 555555555444332 223444455555555555555555555554433
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.5e-17 Score=149.34 Aligned_cols=293 Identities=8% Similarity=-0.074 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.+...+..+...+...|++++|.++|+.+.+.... +...+..++..+...|++++|...++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 445555666667777777777777777777665322 44455566667777777777777777776652 2245667777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 143 MKILFLND-RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 143 i~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|...++...+... .+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 77777777 7777777777777653 22456677777777777777777777777766532 234556667777777777
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHH
Q 010057 222 TRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILL 301 (519)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (519)
+++|...++...+....
T Consensus 175 ~~~A~~~~~~al~~~~~--------------------------------------------------------------- 191 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE--------------------------------------------------------------- 191 (330)
T ss_dssp HHHHHHHHHHHHTTCTT---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCC---------------------------------------------------------------
Confidence 77777777766553211
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCC--------CCcCHHHHHHHHHHHHhc
Q 010057 302 KKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD--------LNLERTAYLALIGILIKL 373 (519)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 373 (519)
+...+..+...+...|++++|+..|+.+.+.. .+.....+..+...+...
T Consensus 192 ----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 192 ----------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred ----------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 23344555555666666666666666665431 123345677788888888
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHH-HhcCCHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVY-FSAGSAD 445 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~-~~~g~~~ 445 (519)
|++++|...++...+.. +.+...+..+...+...|++++|.+.|+++.+..| +...+..+..++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888888888887754 34667777888888888888888888888777644 466777777777 3455543
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.9e-20 Score=179.64 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKL---KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
..|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34677777777777777777777766653 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010057 178 MEYLVRAGK-YEEALEIFSKMQEAGVQPDKAACNILIEKCCKA 219 (519)
Q Consensus 178 i~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 219 (519)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 777777776 366777777777777777777777766555443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6.2e-15 Score=142.79 Aligned_cols=354 Identities=12% Similarity=-0.003 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCC
Q 010057 63 NHDRFTYTTMLDIFGE----AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYP 134 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p 134 (519)
..+...+..+...|.. .+++++|...|+...+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3456666667777766 677777777777777653 55667777777777 777777887777777664
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 010057 135 TIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 135 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.++|+...+.| +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666667777766 677778888877777654 55666677777766 667778888877777654 56
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhH
Q 010057 207 AACNILIEKCCK----AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282 (519)
Q Consensus 207 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (519)
..+..|...|.. .+++++|...|+...+.+...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~------------------------------------------- 220 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL------------------------------------------- 220 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-------------------------------------------
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHH-------------------------------------------
Confidence 667777777776 677777777777766644210
Q ss_pred HhccCCCCcchhHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc----cCChhhHHHHHHHHHhC
Q 010057 283 TTDIEGPLSIDQGLVLILLK----KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD----HRRRDGALLAFEYSVKM 354 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 354 (519)
....+...+.. .++.++|...++.....+ +...+..+...|.. .++.++|+..|+...+.
T Consensus 221 ---------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 221 ---------GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp ---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 11112222332 456666766666665543 33344444445554 66777777777777765
Q ss_pred CCCcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC---CcchHHHHhhhCCcCCC
Q 010057 355 DLNLERTAYLALIGILIKL-----NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR---RPVPAAKIFSLLPEDQK 426 (519)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 426 (519)
+ +...+..+...|... +++++|...++...+.+ +...+..+...|...| +.++|.+.|++..+. .
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~ 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C
Confidence 4 334555666666665 77777777777777765 2344555666665545 567777777766554 3
Q ss_pred CchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHhcccC
Q 010057 427 CTATYTALIGVYFS----AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK----LGRVSDAEIYRKEKKSIQ 493 (519)
Q Consensus 427 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 493 (519)
++..+..|...|.. .+++++|++.|++..+.| ++..+..+...|.+ .+++++|..++++..+..
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 46677777777777 677788888887777765 35566667777766 677788888877776665
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.8e-18 Score=157.93 Aligned_cols=329 Identities=12% Similarity=0.007 Sum_probs=215.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH-HHHHHHHCCC---CCChhhHHHHHHHHHhcCCHHHH
Q 010057 80 KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN-IWEEMKLKEC---YPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a 155 (519)
+.++.+...|+.+.+.+ |+ ++.-.|++++|.. .|++...... ..+...+..+...+.+.|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 44555555666665542 11 2233478888887 7776543311 11356788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
...|+++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+..++..+..+|...|++++|...++.+.+.
T Consensus 84 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 84 VLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999863 4477788999999999999999999999998764 346778999999999999999999999988875
Q ss_pred CCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHH
Q 010057 236 RLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSG 315 (519)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (519)
.......... . +...
T Consensus 162 ~~~~~~~~~~--------------------------------------------------~-------~~~~-------- 176 (368)
T 1fch_A 162 TPAYAHLVTP--------------------------------------------------A-------EEGA-------- 176 (368)
T ss_dssp STTTGGGCC-----------------------------------------------------------------------
T ss_pred CcCcHHHHHH--------------------------------------------------H-------HHHh--------
Confidence 4321100000 0 0000
Q ss_pred HHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc
Q 010057 316 IMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
....+. ..+.. +..+...|++++|+..|+.+.+..... +..++..+...+.+.|++++|...++.+.+.. +.+
T Consensus 177 ---~~~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 ---GGAGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ---hhhccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000000 00111 112225677888888888777654221 46778888888888888888888888887764 345
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------Cc
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP----------SL 463 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~ 463 (519)
...+..+...+...|++++|.+.|+++.+.. .+...|..+..+|.+.|++++|++.|+++.+..... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 6677888888888888888888888776543 457789999999999999999999999988752111 15
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 464 GTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 464 ~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
.+|..+..+|...|++++|..++++..+.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 78999999999999999999998765443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=2.2e-17 Score=153.94 Aligned_cols=282 Identities=10% Similarity=-0.014 Sum_probs=178.5
Q ss_pred ccCChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHH-HHHHHhhcCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 010057 13 KYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWL-FFNWVSRSRGFNH--DRFTYTTMLDIFGEAKRISSMKYV 88 (519)
Q Consensus 13 ~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~ 88 (519)
..+.|+.+...|+.+ ...|+... ..+++++|++ .|+...+...-.| +...+..+...+.+.|++++|...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAEAHP------WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCchhhH------HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 445666677777766 22233211 1267888888 7775543221122 345577888888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010057 89 FELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLP 168 (519)
Q Consensus 89 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 168 (519)
|+.+.+.... +..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++......
T Consensus 87 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 87 FEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999887533 67788888899999999999999999888764 336778888889999999999999999988875321
Q ss_pred CCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 169 PNCYTYTV---------------LMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 169 p~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+...+.. .+..+...|++++|...|+.+.+.... ++..++..+..+|.+.|++++|...++.+
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 -YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp -TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222211 233333777888888888887764211 14667777778888888888888777766
Q ss_pred HHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHH
Q 010057 233 KENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSL 312 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (519)
.+...
T Consensus 244 l~~~~--------------------------------------------------------------------------- 248 (368)
T 1fch_A 244 LSVRP--------------------------------------------------------------------------- 248 (368)
T ss_dssp HHHCT---------------------------------------------------------------------------
T ss_pred HHhCc---------------------------------------------------------------------------
Confidence 55321
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 010057 313 LSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 389 (519)
.+...+..+...+...|++++|+..|+.+.+.. +.+...+..+..++.+.|++++|...++.+.+.
T Consensus 249 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 249 ----------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 134456666777777888888888888877654 345667778888888888888888888887653
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.1e-15 Score=147.68 Aligned_cols=409 Identities=10% Similarity=0.081 Sum_probs=266.2
Q ss_pred CHHHHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010057 32 DSYTVNQVLKT--HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMH 109 (519)
Q Consensus 32 ~~~~~~~ll~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 109 (519)
+...|..++.. .|++++|..+|+.+.+. ++.+...|...+..+.+.|++++|..+|++..+. .|+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 44556555543 47888888888888643 3567778888888888888888888888888876 367777777765
Q ss_pred HH-HhcCChhhHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 010057 110 WL-SNAGDVDGAVN----IWEEMKLK-ECYP-TIVSYTAYMKILFL---------NDRVKEATDVYKEMIQRGLPPNCYT 173 (519)
Q Consensus 110 ~~-~~~g~~~~a~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~ 173 (519)
.. ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34577776665 66655432 4443 45567776665544 6778888888888887311111233
Q ss_pred HHHHHHHHH-------------HcCCHHHHHHHHHHHHH------c---CCCCC--------HHHHHHHHHHHHhc----
Q 010057 174 YTVLMEYLV-------------RAGKYEEALEIFSKMQE------A---GVQPD--------KAACNILIEKCCKA---- 219 (519)
Q Consensus 174 ~~~li~~~~-------------~~~~~~~a~~~~~~m~~------~---g~~p~--------~~~~~~li~~~~~~---- 219 (519)
|........ +.++++.|..++..+.. . .+.|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 333222110 12345555555554321 0 02232 12333333221111
Q ss_pred CCh----HHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhH
Q 010057 220 GET----RTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQG 295 (519)
Q Consensus 220 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (519)
++. ..+..+|++.....+ ....++..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p--------------------------------------------------~~~~~w~~ 277 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLG--------------------------------------------------HHPDIWYE 277 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHT--------------------------------------------------TCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCC--------------------------------------------------CCHHHHHH
Confidence 111 133344444333211 11223333
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-H
Q 010057 296 LVLILLK-------KKNLV-------AIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-R 360 (519)
Q Consensus 296 l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 360 (519)
....+.. .|+++ .|..++++....-.+-+...+..+...+...|++++|..+|+.+.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 3444433 67776 88888888765222335778889999999999999999999999985 343 2
Q ss_pred -HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH-HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHH
Q 010057 361 -TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARRPVPAAKIFSLLPED-QKCTATYTALIGV 437 (519)
Q Consensus 361 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 437 (519)
..|...+..+.+.|++++|.++|....+.. +.+...+...... +...|+.++|..+|+...+. +.++..|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 478888888899999999999999999864 2233333322222 34689999999999987665 3457899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCcccc
Q 010057 438 YFSAGSADKALKIYKTMCRKGI-HPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g~-~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
+.+.|+.++|..+|++....+- .|+ ...|...+......|+.+.+..+.+++.+..|+..
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 9999999999999999998742 222 23677777777889999999999999999988533
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=176.59 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQE---KGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
..|||++|.+|++.|++++|.++|+.|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHH
Q 010057 143 MKILFLNDR-VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD------KAACNILIEK 215 (519)
Q Consensus 143 i~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~ 215 (519)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.+++.+.+. .+++..+++ .-++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999999766554 333344443 2244443 4455566667
Q ss_pred HHhcC
Q 010057 216 CCKAG 220 (519)
Q Consensus 216 ~~~~g 220 (519)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 76655
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5e-18 Score=154.64 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 34 YTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 34 ~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
...+.+|...|++++|.++++.+. .| .+|..+..++.+.|++++|.+.|... +|..+|..++.++..
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 344556666677777777777652 22 36777777777777777777777431 366677777777777
Q ss_pred cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEI 193 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 193 (519)
.|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766555543 3456667777777777777777776663 25666777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 194 FSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 194 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
|..+ ..|..++.++.+.|+++.|.+.++.+
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 7755 25677777777777777777666654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=9.1e-18 Score=156.39 Aligned_cols=279 Identities=10% Similarity=-0.004 Sum_probs=209.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999998863 3478889999999999999999999999998763 335778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
+|...|++++|...++.+.+.... .... ..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~------------------------------------------------~~ 171 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK--YKYL------------------------------------------------VK 171 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH--HHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhCcc--chHH------------------------------------------------Hh
Confidence 999999999999999988774321 0000 00
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhc
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LERTAYLALIGILIKL 373 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 373 (519)
........+..+...+...|++++|+..|+++.+.... ++...+..+...+...
T Consensus 172 -------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 172 -------------------------NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred -------------------------hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 00011223444556677788888888888888776422 2567788888888888
Q ss_pred CCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 374 NTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+..| +..+|..+..+|.+.|++++|++.|+
T Consensus 227 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888888764 45677888888888899999999999888766544 47789999999999999999999999
Q ss_pred HHHHCCC---C--------CCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 453 TMCRKGI---H--------PSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 453 ~m~~~g~---~--------p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
++.+..- . .+...|..+..++...|+.+.+....++..+
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9887521 0 1367889999999999999999988876443
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.8e-14 Score=139.51 Aligned_cols=339 Identities=13% Similarity=0.068 Sum_probs=278.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 010057 43 HPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE----AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----A 114 (519)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 114 (519)
.+++++|++.|+...+. .+...+..+...|.. .++.++|.+.|+...+.| +...+..|-..|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 48999999999998642 467788889999988 899999999999998875 66778888888888 8
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGK 186 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~ 186 (519)
+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998876 67788888888887 889999999999999864 78888999999988 899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHh
Q 010057 187 YEEALEIFSKMQEAGVQPDKAACNILIEKCCK----AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLW 262 (519)
Q Consensus 187 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 262 (519)
.++|.++|+...+.| +...+..+...|.. .+++++|..+|+...+.+...
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----------------------- 256 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI----------------------- 256 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH-----------------------
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH-----------------------
Confidence 999999999998865 56788888888886 789999999999887754321
Q ss_pred hhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc
Q 010057 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLK----KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH 338 (519)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (519)
....+...+.. .++.++|...++...+.+ +...+..+...|...
T Consensus 257 -----------------------------a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 257 -----------------------------AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp -----------------------------HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred -----------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 11122333444 688899999999887654 445666666777666
Q ss_pred -----CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CcchHHHHHHHHHhcCCCccchhHHHHHHHHhc---
Q 010057 339 -----RRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN---TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS--- 407 (519)
Q Consensus 339 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 407 (519)
+++++|+..|+...+.+ +...+..+...|...| ++++|.+.|+...+.| ++..+..|...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 89999999999999876 3456777777777756 7899999999999875 56677778888887
Q ss_pred -CCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 010057 408 -ARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS----AGSADKALKIYKTMCRKGI 459 (519)
Q Consensus 408 -~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 459 (519)
.++.++|.+.|++..+.. ++..+..|...|.+ .+++++|.+.|++..+.|.
T Consensus 379 ~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 789999999999887653 47788999999998 8999999999999999864
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.3e-16 Score=145.95 Aligned_cols=288 Identities=11% Similarity=-0.008 Sum_probs=209.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34556677778888888888888888887753 3366778888888888888888888888887753 336678888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
.|...|++++|...++.+.+..........
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 127 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGS-------------------------------------------------- 127 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHH--------------------------------------------------
Confidence 888888888888888887764332100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH--HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIE--VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.+ ....|+......+.. .+...|++++|+..++.+.+.. +.+...+..+...+..
T Consensus 128 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 128 VN----------------------LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp ----------------------------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HH----------------------hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 00 000011111111212 2566778888888888887764 3366778888888888
Q ss_pred cCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIY 451 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 451 (519)
.|++++|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+++.+.. .+...|..+..+|.+.|++++|.+.|
T Consensus 185 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999998888764 3456778888888889999999999988876543 45778999999999999999999999
Q ss_pred HHHHHCCCCC-----------CcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 452 KTMCRKGIHP-----------SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 452 ~~m~~~g~~p-----------~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
+++.+..... +..++..+..++.+.|++++|..++++..+..|+...
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9998763211 3678888999999999999999999887776665443
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=3.6e-17 Score=149.06 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=67.6
Q ss_pred ccCChhHHHHHHHhCCCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010057 13 KYSTWDSAQDLLKNLPIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVF 89 (519)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 89 (519)
+.|++++|.+.+++++ ++.+|..+..++ |++++|++.|.+ .+|..+|..++..+...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4578999999999983 345888887766 899999999964 367789999999999999999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 90 ELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169 (519)
Q Consensus 90 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 169 (519)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 877764 4567889999999999999999998885 368889999999999999999999999977
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILI 228 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 228 (519)
..|..|..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 37999999999999999999999988 2789999999999999999999543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.7e-14 Score=139.74 Aligned_cols=405 Identities=10% Similarity=0.042 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+-+...|..++.. .+.|++++|..+|+.+.+.. +-+...|..++..+.+.|++++|..+|++.... .|+...|..+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 5578899999984 78899999999999999864 337789999999999999999999999999877 4677788777
Q ss_pred HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCH
Q 010057 143 MKIL-FLNDRVKEATD----VYKEMIQ-RGLPP-NCYTYTVLMEYLVR---------AGKYEEALEIFSKMQEAGVQPDK 206 (519)
Q Consensus 143 i~~~-~~~~~~~~a~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~ 206 (519)
+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677766655 7776655 35444 56678877776655 68899999999998873111112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccc-cchhhhhhHHhc
Q 010057 207 AACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFI-SDNDAVEFVTTD 285 (519)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 285 (519)
..|..........|. ..+..++.+ ....+..+...+................+.+... ......
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~--------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~------ 230 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED--------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV------ 230 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT--------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH------
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH------
Confidence 344333221111111 111111110 0111222221111100000000000000000000 000000
Q ss_pred cCCCCcchhHHHHHHHh----cCCH----HHHHHHHHHHHhcCCCccHHHHHHHHHHHhc-------cCChh-------h
Q 010057 286 IEGPLSIDQGLVLILLK----KKNL----VAIDSLLSGIMDKSIQLDSAVISTIIEVNCD-------HRRRD-------G 343 (519)
Q Consensus 286 ~~~~~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~ 343 (519)
..+...+..... .++. ..+..++++..... .-+...|......+.. .|+++ +
T Consensus 231 -----~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 231 -----DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp -----HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 011111111111 1122 35556676665542 2256677777777664 68877 8
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc--chhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 344 ALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG--VYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+++.. |+ ...|..++..+.+.|++++|.++|++.
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999863223457779999999999999999999999999864 43 247888888888999999999999998
Q ss_pred CcCCCC-chhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 422 PEDQKC-TATYTALIGV-YFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 422 ~~~~~~-~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.+|+ ...|...... +...|++++|.++|++..+.. +.+...|..++..+.+.|+.++|..+|++..+..|.
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 876553 2333332222 346899999999999998872 335788888999999999999999999999877553
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=8e-16 Score=143.18 Aligned_cols=235 Identities=11% Similarity=-0.027 Sum_probs=173.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...|..+...+.+.|++++|...|+.+.+.... +..+|..+...+...|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445778888888899999999999998876433 67888889999999999999999999888763 235778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPN-----------CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNIL 212 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l 212 (519)
+|...|++++|...|+++.+. .|+ ...+..+...+...|++++|..+|+++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999888774 222 223344577778888888888888888775321 157788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...|...|++++|...++...+...
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p------------------------------------------------------- 244 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP------------------------------------------------------- 244 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-------------------------------------------------------
Confidence 8888888888888888887665321
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.+..++..+..+|...|++++|+..|+++.+.. +.+...+..+..+|.+
T Consensus 245 ------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 245 ------------------------------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 134567777778888888888888888887754 3346678888888888
Q ss_pred cCCcchHHHHHHHHHhc
Q 010057 373 LNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~ 389 (519)
.|++++|...++.+.+.
T Consensus 294 ~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSL 310 (365)
T ss_dssp HTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 88888888888888753
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.7e-15 Score=135.25 Aligned_cols=152 Identities=7% Similarity=-0.023 Sum_probs=99.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
+.....|++..|...++........+.......+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33445677777777776654432111123445566777777777777765543 13456667777777777777777
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+|.+.++++...+..| +...+..+...+...|++++|++.++. +.+..++..+...+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777665444 344555566777777777777777766 346667777777777777777777777776
Q ss_pred HHc
Q 010057 233 KEN 235 (519)
Q Consensus 233 ~~~ 235 (519)
.+.
T Consensus 157 ~~~ 159 (291)
T 3mkr_A 157 QDQ 159 (291)
T ss_dssp HHH
T ss_pred Hhh
Confidence 664
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=5.7e-16 Score=138.33 Aligned_cols=250 Identities=11% Similarity=0.043 Sum_probs=139.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
+-....|++..|+..++..... .|+ ......+.++|...|+++.|...++.. -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3344556666666666554333 222 234445566666666666666554331 23455566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhC
Q 010057 187 YEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVH 265 (519)
Q Consensus 187 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (519)
.++|++.++++...+..| +...+..+..++...|++++|.+.++.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------------------------------- 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------------------------------
Confidence 666666666666554334 333444555666666666666665543
Q ss_pred CCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHH
Q 010057 266 PQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGAL 345 (519)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (519)
..+...+..+...|.+.|++++|.
T Consensus 127 --------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 127 --------------------------------------------------------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp --------------------------------------------------------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 113344555666677777777777
Q ss_pred HHHHHHHhCCCCcCHHHH---HHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 346 LAFEYSVKMDLNLERTAY---LALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|++.|+++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776653 332211 112233333466777777777776652 4455556666666666666666666666554
Q ss_pred cCC-CCchhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 010057 423 EDQ-KCTATYTALIGVYFSAGSADK-ALKIYKTMCRK 457 (519)
Q Consensus 423 ~~~-~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 457 (519)
... .++.++..++..+...|+.++ +.++++++.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 432 245556666666666666544 34566666555
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=5.7e-15 Score=135.02 Aligned_cols=230 Identities=10% Similarity=0.019 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+..+...+...|++++|..+|+.+.+.... +...+..+..++...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 445555666666666666666666654322 55566666666666666666666666665542 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPN-CYTYTVL--------------ME-YLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
.|++++|.+.++++.+.. |+ ...+..+ .. .+...|++++|...++.+.+.. +.+..++..+
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666666542 22 1122111 11 2455566677777776666542 2255566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...|...|++++|...++.+.+...
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~------------------------------------------------------- 203 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRP------------------------------------------------------- 203 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-------------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-------------------------------------------------------
Confidence 6667777777777666665544221
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK 372 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (519)
.+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+..
T Consensus 204 ------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 204 ------------------------------DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 123345555566666677777777776666543 2345566677777777
Q ss_pred cCCcchHHHHHHHHHhc
Q 010057 373 LNTFPKVAEIVEEMTKA 389 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~ 389 (519)
.|++++|.+.++.+.+.
T Consensus 253 ~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 77777777777776654
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=3.5e-13 Score=137.43 Aligned_cols=377 Identities=11% Similarity=0.093 Sum_probs=219.1
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFE 90 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 90 (519)
+...|.+++|.++|++.+. .....+.++...+++++|.++.++. -++.+|..+..++.+.|++++|.+.|.
T Consensus 1059 ai~lglyEEAf~IYkKa~~--~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV--NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556777777777777652 2333455566667777777777644 235667777777777777777777774
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010057 91 LMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 91 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
.. -|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .|+
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 42 256677777777777777777777777665543 33333445777777777766533332 2 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQT 250 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (519)
...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n---------------- 1249 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS---------------- 1249 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------------
Confidence 566666777777777777777777764 3677777777777777777777765422
Q ss_pred HhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 010057 251 FKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIST 330 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (519)
...|......+...+++..|....-. +..+...+..
T Consensus 1250 ---------------------------------------~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLee 1285 (1630)
T 1xi4_A 1250 ---------------------------------------TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 1285 (1630)
T ss_pred ---------------------------------------HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHH
Confidence 11333344445555555555544332 3345555667
Q ss_pred HHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHhcCCCc------cchhHHHHH
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL--NTFPKVAEIVEEMTKAGHSL------GVYLGALLI 402 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 402 (519)
++..|.+.|.+++|+.+++...... +-....|+-+...+++- ++..++.+.|..- -++++ +...|..++
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHH
Confidence 7777777777777777777666443 22333455555555543 2333333333322 12222 455677777
Q ss_pred HHHhcCCCcchHHHHh-------------hhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 010057 403 HRLGSARRPVPAAKIF-------------SLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVL 469 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 469 (519)
..|.+.|+++.|.... ........|+..|...+..|... ...++.-+.......+ -+.-.
T Consensus 1363 ~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~P~~lndLl~~l~~rl-----D~~R~ 1435 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRL-----DHTRA 1435 (1630)
T ss_pred HHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--ChHHHHHHHHHhhhcC-----ChHHH
Confidence 7777777777766322 12222234566666666666632 2223333333332211 22345
Q ss_pred HHHHHhcCChhHHHHHHHHhc
Q 010057 470 LAGLEKLGRVSDAEIYRKEKK 490 (519)
Q Consensus 470 ~~~~~~~g~~~~a~~~~~~~~ 490 (519)
+..+.+.|...-+..+++..+
T Consensus 1436 V~l~~~~~~l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1436 VNYFSKVKQLPLVKPYLRSVQ 1456 (1630)
T ss_pred HHHHHHcCChHHhHHHHHHHH
Confidence 556666777776666665543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.4e-13 Score=132.73 Aligned_cols=368 Identities=10% Similarity=-0.044 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK-----G--INI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK---- 130 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 130 (519)
......||.+...+...|++++|.+.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888888999999998888776431 1 122 4567888888999999999999888876542
Q ss_pred -C-CCC-ChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC
Q 010057 131 -E-CYP-TIVSYTAYMKILFL--NDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEY---LVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 131 -~-~~p-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g 201 (519)
+ ..+ ...++..+..++.+ .+++++|.+.|++..+. .| +...+..+... +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 111 23455555555544 35688999999988875 34 34455444444 345577788888888877643
Q ss_pred CCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchh
Q 010057 202 VQPDKAACNILIEKCCKA----GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDND 277 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (519)
+.+..++..+...+... ++++.|.+.+++.......
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--------------------------------------- 245 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--------------------------------------- 245 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS---------------------------------------
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc---------------------------------------
Confidence 22455665555555543 5677888888776654322
Q ss_pred hhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc-------------------
Q 010057 278 AVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH------------------- 338 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------- 338 (519)
.......+...+...|+.+.|...+......... +...+..+...|...
T Consensus 246 -----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
T 4g1t_A 246 -----------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313 (472)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred -----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1113344556777888888888888877665422 344555555555322
Q ss_pred CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccch--hHHHHHH-HHhcCCCcchHH
Q 010057 339 RRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVY--LGALLIH-RLGSARRPVPAA 415 (519)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~ 415 (519)
+..+.|...|+...+.. +.+...+..+...+...|++++|.+.|+..++....+... .+..+.. .+...|+.++|.
T Consensus 314 ~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 23456666776666544 2344557777788888888888888888887765333221 1222222 234667788888
Q ss_pred HHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 416 KIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|++..+..|+...+.. ....+.+++++..+.. +.++.+|..+..+|...|++++|.+.|++..++.|.
T Consensus 393 ~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888776665554332222 2233445555555543 556889999999999999999999999999887554
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=3.9e-12 Score=129.92 Aligned_cols=386 Identities=13% Similarity=0.104 Sum_probs=199.7
Q ss_pred CCHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHH
Q 010057 31 WDSYTVNQVLKTHPPMEKAWLFFNWVSRS-RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI--NIDAVTYTSV 107 (519)
Q Consensus 31 p~~~~~~~ll~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l 107 (519)
-|+..|+.+|...... -.++.+|.... -.-.-++.--...+++|...|.+.++.++++...-.+- .-+...-+.+
T Consensus 951 ~d~~lW~~vl~~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 4667777777554322 23344443210 00123444456677888888888888888888874321 1133455556
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 010057 108 MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 108 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 187 (519)
+.+..+. +..+..+..++.... + ...+...+...|.+++|..+|++... .....+.++. ..+++
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhH
Confidence 6555555 445555555554321 1 23355566667777777777766421 1222233322 45566
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCC
Q 010057 188 EEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQ 267 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (519)
++|.++.++.. +..+|..+..++.+.|++++|.+.|... -+...|......+.+.++.++..+-+...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665441 3456666666666666666666666432 12223333333333333222221110000
Q ss_pred CCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHH
Q 010057 268 FSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLA 347 (519)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (519)
.-...++.+...+...|.+.++++.....++ .++...|..+...|...|++++|..+
T Consensus 1161 ----------------rk~~~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1161 ----------------RKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred ----------------HhhcccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0000112233446666666666664443321 23444555566666666666666666
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC
Q 010057 348 FEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427 (519)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 427 (519)
|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..+|...|++..|......+.. +
T Consensus 1218 Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv---~ 1279 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H 1279 (1630)
T ss_pred HHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---C
Confidence 6653 25666666666666666666666655 3345666666666666666666665554322 2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh--cCChhHHHHHHHH
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK--LGRVSDAEIYRKE 488 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~--~g~~~~a~~~~~~ 488 (519)
+..+..++..|.+.|.+++|+.+++...... +-....|+-+...|++ -++..++.++|..
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455566666777777777777776655332 2223344444444433 3334444555543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.1e-14 Score=125.22 Aligned_cols=232 Identities=14% Similarity=0.034 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc--CHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLAL--RYPVFKEAL 248 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l 248 (519)
...+..+...+...|++++|..+|+...+.. .+..++..+..++...|++++|...++...+..... +..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3467777778888888888888888887765 677788888888888888888888888765522110 000
Q ss_pred HHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 010057 249 QTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVI 328 (519)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (519)
.....+
T Consensus 77 --------------------------------------------------------------------------~~~~~~ 82 (258)
T 3uq3_A 77 --------------------------------------------------------------------------VISKSF 82 (258)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 013455
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcC
Q 010057 329 STIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA 408 (519)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (519)
..+...+...|++++|+..|+.+.+.. |+. ..+.+.|++++|...++.+.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666667777778888888887777643 332 34556677788888888877754 34556677777788888
Q ss_pred CCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 010057 409 RRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
|++++|.+.++++.+. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877654 3457788899999999999999999999998874 4457788888899999999999999999
Q ss_pred HhcccCcc
Q 010057 488 EKKSIQAD 495 (519)
Q Consensus 488 ~~~~~~~~ 495 (519)
+..++.|.
T Consensus 232 ~a~~~~~~ 239 (258)
T 3uq3_A 232 AARTKDAE 239 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHhChh
Confidence 99888754
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.2e-12 Score=124.49 Aligned_cols=389 Identities=12% Similarity=-0.020 Sum_probs=233.0
Q ss_pred CCHHHHHHHH---hcCCChHHHHHHHHHHhhc----C---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 010057 31 WDSYTVNQVL---KTHPPMEKAWLFFNWVSRS----R---GFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK----- 95 (519)
Q Consensus 31 p~~~~~~~ll---~~~~~~~~A~~~~~~~~~~----~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 95 (519)
.....||.+- ...|+.++|++.|+...+. . .-+....+|+.+...|...|++++|...++...+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3345565432 3349999999999876431 1 12334678999999999999999999999887642
Q ss_pred C-CC-CCHHHHHHHHHHHHhc--CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 010057 96 G-IN-IDAVTYTSVMHWLSNA--GDVDGAVNIWEEMKLKECYPT-IVSYTAYMKI---LFLNDRVKEATDVYKEMIQRGL 167 (519)
Q Consensus 96 ~-~~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~ 167 (519)
+ .. ....++..+..++... +++++|++.|++..+.. |+ ...+..+..+ +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 1356676666566554 56899999999988763 43 4455544444 445678889999999888753
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 010057 168 PPNCYTYTVLMEYLVRA----GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPV 243 (519)
Q Consensus 168 ~p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 243 (519)
+.+..++..+...+... +++++|.+++++..... +.+..++..+...|...|+++.|...++...+..+.....
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~- 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL- 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH-
Confidence 33566666666555544 57789999999988753 3466788999999999999999999999988765432211
Q ss_pred HHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 010057 244 FKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL 323 (519)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (519)
+..+-..+......... .............+..+.|...+........ .
T Consensus 284 ~~~lg~~y~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~ 332 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMN------------------------------LRENGMYGKRKLLELIGHAVAHLKKADEAND-N 332 (472)
T ss_dssp HHHHHHHHHHHHHHHHH------------------------------C------CHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHHHHHhhh------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-c
Confidence 11111111100000000 0000000011122334566666666655432 2
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHH--HHHHHHH-HHHhcCCcchHHHHHHHHHhcCCCccchhHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT--AYLALIG-ILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL 400 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (519)
+...+..+...|...|++++|++.|++..+....+... .+..+.. .....|+.++|+..|...++.. |+......
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~ 410 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK 410 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH
Confidence 34457778888999999999999999998876444322 1223322 2356789999999999998764 44332222
Q ss_pred HHHHHhcCCCcchHHHHhhhCCc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccH
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPE-DQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPSLGTF 466 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~ 466 (519)
. ...+.++++.... .+.+..+|..+..+|...|++++|++.|++.++.| ..|++.+|
T Consensus 411 ~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 M---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp H---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred H---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2 2233444444333 35568899999999999999999999999999875 23554443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.1e-13 Score=119.89 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhh
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFS 419 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 419 (519)
++++|+..++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344444444443322 1122334445555555555555555555555433 2334455555555555555555555555
Q ss_pred hCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 420 LLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 420 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
...+. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 54443 233667888888888888988888888887765
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=9.2e-13 Score=112.21 Aligned_cols=167 Identities=11% Similarity=-0.015 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+++...+..+...+.+.|++++|...|+...+.... +...+..+..++.+.|++++|+..|++..+... .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 344455555555556666666666666665554322 455555555566666666666666665555421 134455555
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010057 143 MKILFLN-----------DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNI 211 (519)
Q Consensus 143 i~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 211 (519)
...+... |++++|...|++..+.. +-+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555555 66666666666655532 1134455555566666666666666666655544 45555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 010057 212 LIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
+..+|...|++++|...|+...+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666555544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.1e-12 Score=111.80 Aligned_cols=199 Identities=12% Similarity=0.038 Sum_probs=118.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3456667777777777777777777777777652 2356677777777777777777777777777643 2245566666
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 213 IEKCCKA-----------GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 213 i~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
..++.+. |++++|...++...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-------------------------------------------- 115 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-------------------------------------------- 115 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--------------------------------------------
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--------------------------------------------
Confidence 6666666 666666665555444221
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHH
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT 361 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (519)
-+...+..+...+...|++++|+..|++..+.. .+..
T Consensus 116 -----------------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 116 -----------------------------------------RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 133445555566666777777777777776665 5666
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
.+..+..++...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66777777777777777777777776653 234445555555556666666665555543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=7.3e-13 Score=117.69 Aligned_cols=151 Identities=11% Similarity=-0.075 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS 407 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (519)
+..+...|...|++++|+..|+.+.+.. |+.......+..+...|++++|...+....... +++...+ .++..+..
T Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 189 (275)
T 1xnf_A 114 HLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLG 189 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHH
Confidence 3344444455555555555555554432 222222333334455567777777776665543 2333333 35555666
Q ss_pred CCCcchHHHHhhhCCcCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 010057 408 ARRPVPAAKIFSLLPEDQKC-----TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
.++.++|.+.++......|+ ...|..+...|.+.|++++|.+.|++..+. .|+. +.....++...|++++|
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQD 265 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhh
Confidence 66677777777766554332 567888999999999999999999999876 3432 33345577788888888
Q ss_pred HHHH
Q 010057 483 EIYR 486 (519)
Q Consensus 483 ~~~~ 486 (519)
.+.+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 7766
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=4.4e-11 Score=106.01 Aligned_cols=224 Identities=11% Similarity=0.064 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN----AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
+..++..+...+...|++++|.+.|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45666777777777788888888887777732 45667777777777 788888888888777764 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010057 141 AYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQEAGVQPDKAACNIL 212 (519)
Q Consensus 141 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 212 (519)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777754 66777777777777 778888888887777754 45566666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCC
Q 010057 213 IEKCCK----AGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288 (519)
Q Consensus 213 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (519)
...|.. .+++++|...++...+.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------------------------- 180 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---------------------------------------------------- 180 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------------------------
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------------------------
Confidence 677766 677777777777655432
Q ss_pred CCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc----cCChhhHHHHHHHHHhCCCCcCHHHHH
Q 010057 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCD----HRRRDGALLAFEYSVKMDLNLERTAYL 364 (519)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (519)
+...+..+...|.. .+++++|+..|+...+.+. ...+.
T Consensus 181 -----------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 181 -----------------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 12233344445555 6778888888887777652 45666
Q ss_pred HHHHHHHh----cCCcchHHHHHHHHHhcC
Q 010057 365 ALIGILIK----LNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 365 ~l~~~~~~----~~~~~~a~~~~~~~~~~~ 390 (519)
.+...|.+ .+++++|.+.++...+.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777 788888888888887765
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=7.5e-12 Score=115.49 Aligned_cols=247 Identities=11% Similarity=0.028 Sum_probs=165.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK-YEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
...|+.+...+.+.|++++|++.|++.++.. +-+...|+.+...+...|+ +++|+..|++...... -+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456666677777777777777777777652 2245667777777777775 7777777777776432 25567777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchh
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQ 294 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (519)
++...|++++|+..|+.+.+....
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-------------------------------------------------------- 198 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-------------------------------------------------------- 198 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT--------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc--------------------------------------------------------
Confidence 777777777777777766653321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-c
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK-L 373 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 373 (519)
+...|..+..++...|++++|+..|+++.+.. +-+...|+.+..++.+ .
T Consensus 199 -----------------------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 199 -----------------------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred -----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 34455555666666777777887777777665 2355667777777777 5
Q ss_pred CCcchH-----HHHHHHHHhcCCCccchhHHHHHHHHhcCC--CcchHHHHhhhCCcCCCCchhHHHHHHHHHhcC----
Q 010057 374 NTFPKV-----AEIVEEMTKAGHSLGVYLGALLIHRLGSAR--RPVPAAKIFSLLPEDQKCTATYTALIGVYFSAG---- 442 (519)
Q Consensus 374 ~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 442 (519)
|..++| ++.+...++.. +-+...+..+...+...| +.++|.+.+..+...+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 555777 47777777654 345567777777777777 578888888777222445677888888888764
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCc-ccHHHHHHHH
Q 010057 443 -----SADKALKIYKTM-CRKGIHPSL-GTFNVLLAGL 473 (519)
Q Consensus 443 -----~~~~A~~~~~~m-~~~g~~p~~-~t~~~l~~~~ 473 (519)
..++|+++|+++ .+. .|.. ..|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 258889999888 555 4443 3444444443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=4.3e-11 Score=106.10 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLPPNCYTYT 175 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 175 (519)
+..++..+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45667777777888888888888888877742 45677777777777 888888888888887764 677777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010057 176 VLMEYLVR----AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCK----AGETRTIILILRYMKENRLALRYPVFKEA 247 (519)
Q Consensus 176 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 247 (519)
.+...|.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|...++...+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------
Confidence 77788887 888888888888877754 66677777777777 777777777777665533
Q ss_pred HHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHH
Q 010057 248 LQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAV 327 (519)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (519)
+...
T Consensus 145 ----------------------------------------------------------------------------~~~a 148 (273)
T 1ouv_A 145 ----------------------------------------------------------------------------DGDG 148 (273)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ----------------------------------------------------------------------------cHHH
Confidence 1122
Q ss_pred HHHHHHHHhc----cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 328 ISTIIEVNCD----HRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK----LNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 328 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
+..+...|.. .+++++|+..|+...+.+ +...+..+...+.. .+++++|.+.++...+.+. ...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 2333334444 677888888888877664 34566677777777 7788888888877776642 33444
Q ss_pred HHHHHHhc----CCCcchHHHHhhhCCc
Q 010057 400 LLIHRLGS----ARRPVPAAKIFSLLPE 423 (519)
Q Consensus 400 ~l~~~~~~----~g~~~~A~~~~~~~~~ 423 (519)
.+...|.. .++.++|.+.|++..+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 45555555 5555555555554443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=3.4e-12 Score=117.76 Aligned_cols=236 Identities=11% Similarity=-0.005 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE-TRTIILILRYMKENRLALRYPVFKEALQ 249 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 249 (519)
...|..+...+.+.|++++|+..+++..... +-+..+|..+..++...|+ +++|+..|++..+....
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----------
Confidence 4567888888999999999999999998853 2256788999999999996 99999999988774432
Q ss_pred HHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 010057 250 TFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS 329 (519)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (519)
+...|.
T Consensus 165 --------------------------------------------------------------------------~~~a~~ 170 (382)
T 2h6f_A 165 --------------------------------------------------------------------------NYQVWH 170 (382)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred --------------------------------------------------------------------------CHHHHH
Confidence 455677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhc-C
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGS-A 408 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 408 (519)
.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++.+++.. +.+...++.+..++.. .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 77778888899999999999999876 4467789999999999999999999999999976 4577888999999988 6
Q ss_pred CCcchH-----HHHhhhCCcCC-CCchhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC---
Q 010057 409 RRPVPA-----AKIFSLLPEDQ-KCTATYTALIGVYFSAG--SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLG--- 477 (519)
Q Consensus 409 g~~~~A-----~~~~~~~~~~~-~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g--- 477 (519)
|..++| .+.|++..... .+...|+.+...+.+.| ++++|++.+.++ +. -+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 666888 47777766554 45778999999999988 689999999988 33 2445677888888998864
Q ss_pred ------ChhHHHHHHHHh-cccCccc
Q 010057 478 ------RVSDAEIYRKEK-KSIQADA 496 (519)
Q Consensus 478 ------~~~~a~~~~~~~-~~~~~~~ 496 (519)
..++|.++++++ .+++|..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchh
Confidence 258999999999 8887753
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.7e-11 Score=107.21 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 33444444444444444444444444331 1133344444444444444444444444444431 123444444444444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
..|++++|.++++++...+..| +...+..+..++...|++++|...++...
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555554444321222 22344444444555555555555444433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=4.2e-12 Score=112.58 Aligned_cols=128 Identities=8% Similarity=0.079 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN--CYTYTVLMEY 180 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~ 180 (519)
.+......+...|++++|+..|++..+... .+...+..+..++...|++++|.+.+++..+.+-.|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455566666667777776666665521 1344666666666666666666666666665321111 2335666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 181 LVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+...|++++|.+.|+...+.. +.+..++..+..+|...|++++|...+++.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666665532 123345556666666666666666555543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=2.5e-11 Score=106.18 Aligned_cols=166 Identities=14% Similarity=0.036 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|.+.|+.+.+... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 46678888888899999999999998887643 367788888899999999999999999887763 2367788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988743345 45677888888999999999999999888753 2356788888888888899998
Q ss_pred HHHHHHHHHH
Q 010057 225 IILILRYMKE 234 (519)
Q Consensus 225 a~~~~~~~~~ 234 (519)
|...++.+.+
T Consensus 194 A~~~~~~~~~ 203 (252)
T 2ho1_A 194 ARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888887665
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.9e-12 Score=123.42 Aligned_cols=373 Identities=9% Similarity=-0.001 Sum_probs=190.2
Q ss_pred HhhhccCChhHHHHHHHhC---CCCCCHHH-HHHHHhcCCCh---HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-
Q 010057 9 YKILKYSTWDSAQDLLKNL---PIKWDSYT-VNQVLKTHPPM---EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK- 80 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~---~~~p~~~~-~~~ll~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 80 (519)
..+.+.|++++|++.|++. +. |+... ...+....|+. ++|.+.|+.... .++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY-SEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----TSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-CTGGGTCC---------------------------------CHHHHHHHHHTC--
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhCCC
Confidence 3455667777777777765 32 22211 11112222444 677777766641 14444555555444443
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010057 81 ----RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDG---AVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK 153 (519)
Q Consensus 81 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 153 (519)
+.++|...|+...+.|.. ..+..|...|...+..+. +.+.+......| +...+..|...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 566777777777665532 245555555555444333 333333333333 3455555666666655443
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHH
Q 010057 154 EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG---KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA----GETRTII 226 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~ 226 (519)
++.+....+.+.-...++..+..|...|...| +.++|++.|+...+.| .++...+..|...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 33333222221111112225666666666666 6667777776666655 23444444555555433 4566666
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCH
Q 010057 227 LILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNL 306 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (519)
..|+... .+
T Consensus 238 ~~~~~aa-~g---------------------------------------------------------------------- 246 (452)
T 3e4b_A 238 ALLEKIA-PG---------------------------------------------------------------------- 246 (452)
T ss_dssp HHHHHHG-GG----------------------------------------------------------------------
T ss_pred HHHHHHc-CC----------------------------------------------------------------------
Confidence 6665543 11
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHH-H--hccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-----Ccch
Q 010057 307 VAIDSLLSGIMDKSIQLDSAVISTIIEV-N--CDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN-----TFPK 378 (519)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 378 (519)
+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++
T Consensus 247 -----------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 247 -----------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp -----------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred -----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 12222222222 2 34667788888888877766 4455566666665 44 7777
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhc----CCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh----cCCHHHHHHH
Q 010057 379 VAEIVEEMTKAGHSLGVYLGALLIHRLGS----ARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS----AGSADKALKI 450 (519)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 450 (519)
|.+.|+... . .++.....|...|.. ..+.++|.+.|++..+. .++.....|...|.. .+++.+|...
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 887777776 3 344555556655555 33777888888877654 335666777777764 4588999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 451 YKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 451 ~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
|+...+.|. ++.......+......++..+|..+.++-.+.
T Consensus 381 ~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 381 SQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999888873 22222222222223334566676666654443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=8.7e-13 Score=117.19 Aligned_cols=183 Identities=13% Similarity=0.037 Sum_probs=121.7
Q ss_pred CChHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNH--DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
+++++|++.|+.+.+.....+ +..+|..+...+...|++++|...|+...+.... +..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 677888888887764321111 3566777778888888888888888887776432 5677777888888888888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010057 122 NIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAG 201 (519)
Q Consensus 122 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 201 (519)
..|++..+.. +.+..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 8888877653 225667777777788888888888888877764 3444444444455566677777777776665542
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 202 VQPDKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 202 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
+++...+ .++..+...++.+.|...++..
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 2232233 3555555666666666666554
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=3.3e-11 Score=103.23 Aligned_cols=163 Identities=10% Similarity=-0.017 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 33444445555555555555555555444321 134444444455555555555555555444432 1133444444444
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 146 LFLN-DRVKEATDVYKEMIQRGLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 146 ~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 4444 555555555544444211122 2344444444444444444444444444321 112334444444444444444
Q ss_pred HHHHHHHH
Q 010057 224 TIILILRY 231 (519)
Q Consensus 224 ~a~~~~~~ 231 (519)
+|...++.
T Consensus 165 ~A~~~~~~ 172 (225)
T 2vq2_A 165 DADYYFKK 172 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.2e-11 Score=109.68 Aligned_cols=164 Identities=16% Similarity=0.095 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--IVSYTAYMKIL 146 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 146 (519)
+......+...|++++|...|+...+.... +...+..+...+...|++++|...|++..+....|+ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444556667777777777777777765332 444677777777777777777777777766321111 22367777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010057 147 FLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 226 (519)
...|++++|.+.|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+..++..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888887777652 2255677777777788888888888777776542 224455666652344445777777
Q ss_pred HHHHHHHHc
Q 010057 227 LILRYMKEN 235 (519)
Q Consensus 227 ~~~~~~~~~ 235 (519)
..++...+.
T Consensus 163 ~~~~~a~~~ 171 (272)
T 3u4t_A 163 SSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=6.6e-10 Score=109.55 Aligned_cols=221 Identities=7% Similarity=-0.070 Sum_probs=157.6
Q ss_pred CCCcchhHHHHHHHhcCCHHHHH-HHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC---------C
Q 010057 288 GPLSIDQGLVLILLKKKNLVAID-SLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL---------N 357 (519)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~ 357 (519)
....++-..+......|+.+.|. .++++..... +.+...+-..+...-..|++++|..+|+.+..... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34555666666777788888886 9998877532 33555667778888889999999999998876410 1
Q ss_pred cC------------HHHHHHHHHHHHhcCCcchHHHHHHHHHhc-CCCccchhHHHHHHHHhcC-CCcchHHHHhhhCCc
Q 010057 358 LE------------RTAYLALIGILIKLNTFPKVAEIVEEMTKA-GHSLGVYLGALLIHRLGSA-RRPVPAAKIFSLLPE 423 (519)
Q Consensus 358 ~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 423 (519)
|+ ...|...+....+.|+.+.|..+|..+.+. + .....+|...+..-.+. ++.+.|.++|+...+
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 32 235777788888889999999999999876 2 12233343333333344 458999999998766
Q ss_pred C-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhcccCccccccc
Q 010057 424 D-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP--SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKD 500 (519)
Q Consensus 424 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 500 (519)
. +.++..|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+++.+..|+.
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~---- 574 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV---- 574 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC----
T ss_pred HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence 5 4456677888888888999999999999998874211 23456666666688999999999999998887753
Q ss_pred ccchHHHHhhhhccC
Q 010057 501 AVPMEEKICDLLYGG 515 (519)
Q Consensus 501 ~~~~~~~i~~~~~~~ 515 (519)
..+..|+....+++
T Consensus 575 -~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 575 -NKLEEFTNKYKVLD 588 (679)
T ss_dssp -CHHHHHHHHTCBTT
T ss_pred -cHHHHHHHHhcCCc
Confidence 35555555554443
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=4.2e-12 Score=120.97 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=109.5
Q ss_pred CChhhHHHHHHHHHhCCCCcCHHHHHHHHHH-H--HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC-----C
Q 010057 339 RRRDGALLAFEYSVKMDLNLERTAYLALIGI-L--IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR-----R 410 (519)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~ 410 (519)
+++++|+..|+... .| +...+..+... + ...+++++|.+.|+...+.| ++.....|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68999999999987 33 44556666665 3 46899999999999999887 4556666767766 44 8
Q ss_pred cchHHHHhhhCCcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHH
Q 010057 411 PVPAAKIFSLLPEDQKCTATYTALIGVYFS----AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEK----LGRVSDA 482 (519)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~----~g~~~~a 482 (519)
.++|.+.|++.. +.++..+..|...|.. ..++++|++.|++..+.|. +.....+...|.. ..+.++|
T Consensus 303 ~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 303 AKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 999999999988 5667888888888877 4599999999999998873 4455666666653 4578899
Q ss_pred HHHHHHhccc
Q 010057 483 EIYRKEKKSI 492 (519)
Q Consensus 483 ~~~~~~~~~~ 492 (519)
..++++..+.
T Consensus 378 ~~~~~~A~~~ 387 (452)
T 3e4b_A 378 YVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHC
Confidence 9999887654
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1e-11 Score=107.90 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|...|+.+.+.... +...+..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555555666666666666666554322 45555556666666666666666666655442 1244555555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655542 2245555555556666666666666666555432 22444555555555555555555
Q ss_pred HHHHHHHHH
Q 010057 226 ILILRYMKE 234 (519)
Q Consensus 226 ~~~~~~~~~ 234 (519)
...++.+.+
T Consensus 179 ~~~~~~~~~ 187 (243)
T 2q7f_A 179 LSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554433
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1e-11 Score=108.00 Aligned_cols=202 Identities=16% Similarity=0.120 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567777778888888888888888887653 2356777888888888888888888888887753 336677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhH
Q 010057 180 YLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDS 259 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (519)
.+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++.+.+...
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------------- 156 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---------------------- 156 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----------------------
Confidence 8888888888888888887653 33566777778888888888888888777655321
Q ss_pred HHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccC
Q 010057 260 LLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHR 339 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (519)
.+...+..+...+...|
T Consensus 157 ---------------------------------------------------------------~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 157 ---------------------------------------------------------------NDTEARFQFGMCLANEG 173 (243)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHcC
Confidence 12334555666667777
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAG 390 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 390 (519)
++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777776654 3345667777777777777777777777777653
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.5e-11 Score=114.89 Aligned_cols=298 Identities=10% Similarity=0.003 Sum_probs=177.6
Q ss_pred HhcCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHH--HhcCChhhHH-----------HHHHHHHHCCCCCChhh-
Q 010057 77 GEAKRISSMKYVFELMQEK--GI--NIDAVTYTSVMHWL--SNAGDVDGAV-----------NIWEEMKLKECYPTIVS- 138 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~~~~p~~~~- 138 (519)
.+.+++++|..+++++.+. .+ .++...|..++..- ...++.+.+. +.++.+.... ++...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 5678888888888887653 22 22333444444321 1223344444 6666665431 11111
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---C
Q 010057 139 -----YTAYMKILFLNDRVKEATDVYKEMIQRG-LPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GV---Q 203 (519)
Q Consensus 139 -----~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~---~ 203 (519)
+......+...|++++|...|++..+.- -.++ ..++..+...|...|++++|...+.+..+. .. .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 2224556778899999999999987630 0122 357888889999999999999999887653 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhH
Q 010057 204 P-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFV 282 (519)
Q Consensus 204 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (519)
+ ...++..+..+|...|++++|...+++..+.......
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------- 219 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------------------------------------- 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----------------------------------------
Confidence 1 2347788888999999999999998876552110000
Q ss_pred HhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CC-C
Q 010057 283 TTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DL-N 357 (519)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~ 357 (519)
......++..+...|...|++++|+..|++..+. +. +
T Consensus 220 --------------------------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 220 --------------------------------------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 0001234566777788888888888888877762 22 3
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC----CCccchhHHHHHHHHhcCCC---cchHHHHhhhCCcCCCCchh
Q 010057 358 LERTAYLALIGILIKLNTFPKVAEIVEEMTKAG----HSLGVYLGALLIHRLGSARR---PVPAAKIFSLLPEDQKCTAT 430 (519)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 430 (519)
....++..+...+.+.|++++|...++...+.. -+.....+..+...|...|+ .++|..+++.....+.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 334558888888888999999988888876531 11111123334444555555 44455555444221112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
+..+...|...|++++|.+.|++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=8.8e-11 Score=100.55 Aligned_cols=191 Identities=12% Similarity=0.019 Sum_probs=162.1
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhhH
Q 010057 42 THPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA-GDVDGA 120 (519)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a 120 (519)
..|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+...+... |++++|
T Consensus 20 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHHH
Confidence 3499999999999887543 55688899999999999999999999999988643 3678899999999999 999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 121 VNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 121 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988323333 5778889999999999999999999998863 33588899999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 200 AGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 200 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.....+...+..+...+...|+.+.+..+++.+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 176 RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 5432467788888888899999999999999887644
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.2e-12 Score=123.76 Aligned_cols=278 Identities=11% Similarity=0.010 Sum_probs=172.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC----YTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAA 208 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~ 208 (519)
.+..+...+...|++++|...|++..+.+.. +. ..+..+...|...|++++|...+++..+. +-.| ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666777777777777777664211 22 35666777777777777777777766542 1112 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCC
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (519)
+..+...|...|++++|...+++..+..... ++.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~------------------------------- 162 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL---------------GDR------------------------------- 162 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------TCH-------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------hch-------------------------------
Confidence 6777778888888888888877655421000 000
Q ss_pred CCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC-----------------hhhHHHHHHHH
Q 010057 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR-----------------RDGALLAFEYS 351 (519)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~~ 351 (519)
......+..+...|...|+ +++|++.+++.
T Consensus 163 ---------------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 163 ---------------------------------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 0011223333334444444 55555555544
Q ss_pred HhC----CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-----ccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 352 VKM----DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS-----LGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 352 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
.+. +..+ ....+..+...+...|++++|...+....+.... .....+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 332 1111 1234666777777778888888777777643210 11225667777788888888888887765
Q ss_pred CcCCC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 422 PEDQK-------CTATYTALIGVYFSAGSADKALKIYKTMCRKG----IH-PSLGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 422 ~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-p~~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
....+ ...++..+...|...|++++|.+.+++..+.. -. ....++..+...|...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 43211 14577888999999999999999999887641 11 11347777888999999999999999988
Q ss_pred cccCcc
Q 010057 490 KSIQAD 495 (519)
Q Consensus 490 ~~~~~~ 495 (519)
.++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 877654
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=2.7e-12 Score=106.30 Aligned_cols=170 Identities=16% Similarity=0.088 Sum_probs=147.3
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
+..+|..+...|...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56788889999999999999999999998875 3466778999999999999999999999998765 345667777788
Q ss_pred HHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 010057 404 RLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
.+...++++.|.+.+.+.... +.+...+..+..+|.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 899999999999999887665 3457789999999999999999999999999874 44677899999999999999999
Q ss_pred HHHHHHhcccCccc
Q 010057 483 EIYRKEKKSIQADA 496 (519)
Q Consensus 483 ~~~~~~~~~~~~~~ 496 (519)
.+.+++..+++|+.
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999998864
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=123.66 Aligned_cols=276 Identities=14% Similarity=0.024 Sum_probs=145.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD- 205 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~- 205 (519)
....+......+...|++++|...|++..+.+. .+ ..++..+...|...|++++|...+++.... +-.|.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455555666667777777777776666421 12 245666666777777777777777665432 21221
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHh
Q 010057 206 KAACNILIEKCCKAGETRTIILILRYMKENRLAL-RYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTT 284 (519)
Q Consensus 206 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (519)
..++..+...|...|+++.|...++...+..... +....
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------------------------- 126 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE---------------------------------------- 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch----------------------------------------
Confidence 3366667777777788888877777655421110 00000
Q ss_pred ccCCCCcchhHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHhccC
Q 010057 285 DIEGPLSIDQGLVLILLKKKN--------------------LVAIDSLLSGIMDK----SIQL-DSAVISTIIEVNCDHR 339 (519)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~ 339 (519)
......+...+...|+ ++.|...+...... +..+ ....+..+...|...|
T Consensus 127 -----~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 127 -----ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc
Confidence 0012233334445555 66666666554321 1111 1234555666666666
Q ss_pred ChhhHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhcC----CCc-cchhHHHHHHHHhcCC
Q 010057 340 RRDGALLAFEYSVKMDL-NLE----RTAYLALIGILIKLNTFPKVAEIVEEMTKAG----HSL-GVYLGALLIHRLGSAR 409 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g 409 (519)
++++|+..+++..+... .++ ..++..+...+...|++++|...+....+.. ..+ ...++..+...|...|
T Consensus 202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 77777766666554310 011 1245566666666666666666666655321 000 1334455555566666
Q ss_pred CcchHHHHhhhCCcC---CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 410 RPVPAAKIFSLLPED---QKC----TATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
++++|.+.++..... .++ ..++..+...|...|++++|.+.+++..+
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666544332 111 33455556666666666666666665543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.1e-12 Score=120.61 Aligned_cols=300 Identities=10% Similarity=-0.056 Sum_probs=186.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPP-N 170 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 170 (519)
....+......+...|++++|...|++..+.... + ..+|..+...+...|++++|...+++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444455555566666666666666665554211 1 234555666666666666666666654431 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC--------------------hHHH
Q 010057 171 CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAGE--------------------TRTI 225 (519)
Q Consensus 171 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~--------------------~~~a 225 (519)
..++..+...|...|++++|...+++..+. +-.+ ...++..+...|...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 335566666777777777777777666532 1111 13367777788888888 7777
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
...++...+.. ...+..... ...+..+...+...|+
T Consensus 167 ~~~~~~al~~~---------------~~~~~~~~~-----------------------------~~~~~~la~~~~~~g~ 202 (406)
T 3sf4_A 167 VDFYEENLSLV---------------TALGDRAAQ-----------------------------GRAFGNLGNTHYLLGN 202 (406)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH-----------------------------HHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHH---------------HhccCcHHH-----------------------------HHHHHHHHHHHHHccC
Confidence 77776654411 000000000 0134456678888999
Q ss_pred HHHHHHHHHHHHhcCC-Cc----cHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCC
Q 010057 306 LVAIDSLLSGIMDKSI-QL----DSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLE-RTAYLALIGILIKLNT 375 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~ 375 (519)
+++|...++....... .+ ....+..+...|...|++++|+..+++..+. +..+. ..++..+...+...|+
T Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 9999999988654311 11 2347888888999999999999999988764 21111 4468888999999999
Q ss_pred cchHHHHHHHHHhcC----CC-ccchhHHHHHHHHhcCCCcchHHHHhhhCCcC---C----CCchhHHHHHHHHHhcCC
Q 010057 376 FPKVAEIVEEMTKAG----HS-LGVYLGALLIHRLGSARRPVPAAKIFSLLPED---Q----KCTATYTALIGVYFSAGS 443 (519)
Q Consensus 376 ~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~~~li~~~~~~g~ 443 (519)
+++|...+....+.. .. ....++..+...|...|++++|.+.+++..+. . ....++..+...|...|+
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 999999999987532 11 12557778888999999999999998865432 0 112344455555555554
Q ss_pred H
Q 010057 444 A 444 (519)
Q Consensus 444 ~ 444 (519)
.
T Consensus 363 ~ 363 (406)
T 3sf4_A 363 S 363 (406)
T ss_dssp T
T ss_pred h
Confidence 4
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.2e-12 Score=118.21 Aligned_cols=134 Identities=13% Similarity=-0.051 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcC----C-CccchhHHHHHHHHhcCCCcchHHHHhhhCCcC---CCC----ch
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAG----H-SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED---QKC----TA 429 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~ 429 (519)
.+..+...+...|++++|.+.++...+.. . ......+..+...+...|++++|.+.+++.... .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 46666667777777777777777665321 0 011225566666777777777777777655332 111 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKG----IHP-SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
++..+...|...|++++|.+.+++..+.. -.+ ...++..+...|.+.|++++|..++++..++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 77888899999999999999999887641 111 1446778888999999999999999998877553
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=2.7e-11 Score=113.20 Aligned_cols=300 Identities=8% Similarity=-0.017 Sum_probs=185.1
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC-----CC--CCCHHHHHHHHhcC-----CChHHHH-----------HHHHHHhhc
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL-----PI--KWDSYTVNQVLKTH-----PPMEKAW-----------LFFNWVSRS 59 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~-----~~--~p~~~~~~~ll~~~-----~~~~~A~-----------~~~~~~~~~ 59 (519)
..+......++.+++++|..+++++ .. .++...|-.++... ++.+.+. +.++.+...
T Consensus 14 ~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~ 93 (383)
T 3ulq_A 14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK 93 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc
Confidence 3567778888899999999988877 33 23333344443321 2233333 555554211
Q ss_pred CCCCCCHHHH------HHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 60 RGFNHDRFTY------TTMLDIFGEAKRISSMKYVFELMQEK----GINI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 60 ~~~~~~~~~~------~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
+++...+ -.....+...|++++|...++...+. +-.+ ...++..+...|...|+++.|...+++..
T Consensus 94 ---~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 94 ---QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 12455667778888888888887653 1111 23567778888888888888888888765
Q ss_pred HCC--C---C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010057 129 LKE--C---Y-PTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL-PPN----CYTYTVLMEYLVRAGKYEEALEIFSKM 197 (519)
Q Consensus 129 ~~~--~---~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m 197 (519)
+.. . . ....+++.+...|...|++++|...|++..+..- .++ ..++..+...|...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 431 1 1 1134677777888888888888888887664210 012 236777788888888888888888877
Q ss_pred HHc----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCccc
Q 010057 198 QEA----GV-QPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEF 272 (519)
Q Consensus 198 ~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 272 (519)
.+. +. +....++..+..+|.+.|++++|...+++..+.....
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------- 297 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------- 297 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------------------
Confidence 652 23 2234577778888888888888888887655421100
Q ss_pred ccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC---hhhHHHHHH
Q 010057 273 ISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR---RDGALLAFE 349 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 349 (519)
+-......+..+...|...|+ .++|+.+++
T Consensus 298 -----------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 298 -----------------------------------------------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp -----------------------------------------------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 000011224445566667777 566666665
Q ss_pred HHHhCCCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 350 YSVKMDLNLE-RTAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 350 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
.. +..|+ ...+..+...|...|++++|.+.++...+
T Consensus 331 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 331 SK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54 32332 33466778888888888888888888765
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=7.9e-12 Score=113.12 Aligned_cols=244 Identities=12% Similarity=0.081 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQR-------GLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GV 202 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~ 202 (519)
..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666677777777777777777776652 12223456677777777788888888777776543 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhh
Q 010057 203 QP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEF 281 (519)
Q Consensus 203 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (519)
.| ...++..+...|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------------------------------------------- 141 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR--------------------------------------------- 141 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH---------------------------------------------
Confidence 22 34577788888889999999998888765521
Q ss_pred HHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC------C
Q 010057 282 VTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM------D 355 (519)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 355 (519)
..............+..+...+...|++++|++.|+.+.+. +
T Consensus 142 --------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 142 --------------------------------EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp --------------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred --------------------------------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 00000000112344666677778888888888888877664 2
Q ss_pred CCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcC-------CCccc-h------hHHHHHHHHhcCCCcchHHHHhhh
Q 010057 356 LNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKAG-------HSLGV-Y------LGALLIHRLGSARRPVPAAKIFSL 420 (519)
Q Consensus 356 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-~------~~~~l~~~~~~~g~~~~A~~~~~~ 420 (519)
..| ....+..+...+...|++++|.+.++.+.+.. ..+.. . .+..+...+...+.+.++...++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 122 23457788888888999999998888887531 11111 1 111122223333445555555554
Q ss_pred CCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 421 LPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 421 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
.....| +..+|..+..+|.+.|++++|.++|++..+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444322 344566666666666777777666666554
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=3.4e-12 Score=120.68 Aligned_cols=275 Identities=13% Similarity=0.006 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTI----VSYTAYMKILFLNDRVKEATDVYKEMIQR----GL-PPNCYT 173 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~ 173 (519)
.+..+...+...|++++|...|++..+.... +. ..|..+...|...|++++|...+++..+. +- .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666667777777777776655211 22 35666666777777777777777665542 11 112346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 010057 174 YTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAGE-----------------TRTIILILRY 231 (519)
Q Consensus 174 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 231 (519)
+..+...|...|++++|...+++..+. +-.| ...++..+...|...|+ ++.|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777777888888888887776543 1112 23477778888888888 6777666665
Q ss_pred HHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHH
Q 010057 232 MKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (519)
..+..
T Consensus 209 al~~~--------------------------------------------------------------------------- 213 (411)
T 4a1s_A 209 NLKLM--------------------------------------------------------------------------- 213 (411)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 43310
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010057 312 LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LE----RTAYLALIGILIKLNTFPKVAEIVEEM 386 (519)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 386 (519)
.... ........+..+...|...|++++|+..|++..+.... ++ ...+..+...+...|++++|...++..
T Consensus 214 --~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 214 --RDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp --HHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --HHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 0000 00001224445555666666666666666665543110 11 124666677777777777777777776
Q ss_pred HhcCCC-----ccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC---C----CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 387 TKAGHS-----LGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ---K----CTATYTALIGVYFSAGSADKALKIYKTM 454 (519)
Q Consensus 387 ~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m 454 (519)
.+.... ....++..+...|...|++++|.+.+++..... + ...++..+..+|.+.|++++|.+.|++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 542110 123456667777777788877777777654321 1 1347788999999999999999999998
Q ss_pred HHC
Q 010057 455 CRK 457 (519)
Q Consensus 455 ~~~ 457 (519)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=2.1e-11 Score=111.60 Aligned_cols=274 Identities=14% Similarity=0.049 Sum_probs=167.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPP-NCYTY 174 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~ 174 (519)
+......+...|++++|...|++..+.... + ...+..+...+...|++++|.+.+++..+. +-.| ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666667777777777776654211 2 245666666777777777777777665432 1111 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAG-VQPD----KAACNILIEKCCKAGE--------------------TRTIILIL 229 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 229 (519)
..+...+...|++++|...+++..+.. -.++ ..++..+...|...|+ ++.|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 677777778888888888877765421 0112 3367777778888888 66666666
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHH
Q 010057 230 RYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAI 309 (519)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (519)
++.....
T Consensus 167 ~~a~~~~------------------------------------------------------------------------- 173 (338)
T 3ro2_A 167 EENLSLV------------------------------------------------------------------------- 173 (338)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 5543310
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHhcCCcchHHHHHH
Q 010057 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLN-LERTAYLALIGILIKLNTFPKVAEIVE 384 (519)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 384 (519)
.... ........+..+...+...|++++|+..++...+. +.. ....++..+...+...|++++|...++
T Consensus 174 ----~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 174 ----TALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp ----HHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----HhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000 00001234455556666677777777777666543 111 112256677777778888888888877
Q ss_pred HHHhcC----CC-ccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC---C----CchhHHHHHHHHHhcCCHHHHHHHHH
Q 010057 385 EMTKAG----HS-LGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ---K----CTATYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 385 ~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
...+.. .. ....++..+...+...|++++|...+++..... + ...++..+...|.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 766421 11 114456667777888888888888877654321 1 13477889999999999999999999
Q ss_pred HHHHC
Q 010057 453 TMCRK 457 (519)
Q Consensus 453 ~m~~~ 457 (519)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98875
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=2.7e-10 Score=94.15 Aligned_cols=169 Identities=12% Similarity=0.065 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYM 143 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 143 (519)
.++.+|..+...|.+.|++++|.+.|++..+.... +..++..+..++.+.|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 46778999999999999999999999999887544 6788999999999999999999999998776422 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 144 KILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
..+...++++.|...+.+..... +-+...+..+...|.+.|++++|++.|++..+.. +.+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88999999999999999988763 3467888999999999999999999999998763 336678999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 010057 224 TIILILRYMKENR 236 (519)
Q Consensus 224 ~a~~~~~~~~~~~ 236 (519)
+|...|++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887754
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=2.5e-10 Score=103.00 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=101.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-HH-HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-RT-AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
.|..+...+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+...+.. +.+...+......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4555555566666677777777666653 232 22 56666666666777777777777776643 2233333332222
Q ss_pred -HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHhcCCh
Q 010057 405 -LGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKG-IHPS--LGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 405 -~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~l~~~~~~~g~~ 479 (519)
+...|+.++|.++|++..+. +.+...|..++..+.+.|++++|..+|++..+.. ++|+ ...|..++....+.|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 12256777777777665443 3345667777777777777777777777777652 3442 34566666666677777
Q ss_pred hHHHHHHHHhcccCcc
Q 010057 480 SDAEIYRKEKKSIQAD 495 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~ 495 (519)
++|..+++++.+..|+
T Consensus 258 ~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 258 ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHccc
Confidence 7777777777776664
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1.4e-08 Score=100.15 Aligned_cols=438 Identities=11% Similarity=0.074 Sum_probs=263.3
Q ss_pred hhHHHHHHHhC--CCCCCHHHHHHHHhcC---CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHH
Q 010057 17 WDSAQDLLKNL--PIKWDSYTVNQVLKTH---PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR---ISSMKYV 88 (519)
Q Consensus 17 ~~~a~~~~~~~--~~~p~~~~~~~ll~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~ 88 (519)
..+.+..|++. ..+-|...|..++..+ +..+.+..+|+.+.... +.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 33344444443 3345677777777643 67888888888887543 6677778888888777777 8888888
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------hhHHHHHHHHHH-CCC-CCC-hhhHHHHHHHHH---------
Q 010057 89 FELMQEKG-INIDAVTYTSVMHWLSNAGDV--------DGAVNIWEEMKL-KEC-YPT-IVSYTAYMKILF--------- 147 (519)
Q Consensus 89 ~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~li~~~~--------- 147 (519)
|+...... ..|++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 88887753 136777888777766665543 234467776543 355 454 456777665433
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHH----------HHcCCHHHHHHHHHHHHHc--CCC---------
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTV---LMEYL----------VRAGKYEEALEIFSKMQEA--GVQ--------- 203 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---li~~~----------~~~~~~~~a~~~~~~m~~~--g~~--------- 203 (519)
..++.+.+..+|+..+......-..+|.. +-..+ -...+++.|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23456778888888775311111223322 11110 0112345566666554321 111
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHh
Q 010057 204 ------P-----D---KAACNILIEKCCKAG-------ETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLW 262 (519)
Q Consensus 204 ------p-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 262 (519)
| + ...|...+.---..+ ..+.+..+|++....-.. ....+.....-+...++.+...+
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 134444444322222 123455667776654332 22222222222222222111100
Q ss_pred hhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCc----------
Q 010057 263 QVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKS---------IQL---------- 323 (519)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---------- 323 (519)
...............++-..+...-..|+++.|..+++.+.... -.|
T Consensus 365 --------------~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 365 --------------KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp --------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred --------------HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 00000111111222334456667778899999999999887531 013
Q ss_pred --cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-CCcchHHHHHHHHHhcCCCccchhHHH
Q 010057 324 --DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKL-NTFPKVAEIVEEMTKAGHSLGVYLGAL 400 (519)
Q Consensus 324 --~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (519)
...+|...++...+.|..+.|..+|..+++.-..+....|......-.+. ++.+.|..+|+..++. ++.+...+..
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 12367777777778899999999999998761122334454433333444 4589999999999986 4556667778
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcCCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPEDQK----CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
.++.....|+.+.|..+|++.....| ....|...+..-.+.|+.+.+.++.+++.+. .|+......+.+-|.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 88888889999999999999877644 2468889999889999999999999999988 677666666666553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=3e-11 Score=109.22 Aligned_cols=248 Identities=12% Similarity=0.019 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-------GVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYP 242 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 242 (519)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 4567888999999999999999999998763 223345578888999999999999999988765521
Q ss_pred HHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010057 243 VFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQ 322 (519)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (519)
.........
T Consensus 100 -----------------------------------------------------------------------~~~~~~~~~ 108 (311)
T 3nf1_A 100 -----------------------------------------------------------------------EKTLGKDHP 108 (311)
T ss_dssp -----------------------------------------------------------------------HHHHCTTCH
T ss_pred -----------------------------------------------------------------------HHHhCCCCh
Confidence 010000111
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhC------CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc------
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKM------DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKA------ 389 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 389 (519)
.....+..+...|...|++++|+..|+++.+. +..| ....+..+...+...|++++|.+.++.+.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 13445667777888889999999888887764 2222 3445888889999999999999999998764
Q ss_pred C-CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC---------CC-Cch------hHHHHHHHHHhcCCHHHHHHHHH
Q 010057 390 G-HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED---------QK-CTA------TYTALIGVYFSAGSADKALKIYK 452 (519)
Q Consensus 390 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~------~~~~li~~~~~~g~~~~A~~~~~ 452 (519)
+ .+....++..+...|...|++++|.+.++++.+. .+ +.. .+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2 1223456777888899999999999988876532 11 111 22223333444455555666666
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...... +.+..++..+..+|.+.|++++|.+++++..++.|+
T Consensus 269 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 665442 334677888999999999999999999999877654
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=5.7e-10 Score=103.94 Aligned_cols=314 Identities=11% Similarity=-0.005 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHH--HhcCChhhHH---------HHHH
Q 010057 63 NHDRFTYTTMLDIF--GEAKRISSMKYVFELMQEK--GI--NIDAVTYTSVMHWL--SNAGDVDGAV---------NIWE 125 (519)
Q Consensus 63 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~--~~~g~~~~a~---------~~~~ 125 (519)
.|+..+-+.+-.-| ...+++++|.++++++.+. .+ .++...|-.++..- .-.+..+.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555555555555 6788899999888887552 12 22334444444321 1123333333 6666
Q ss_pred HHHHCCCCCCh-h---hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 126 EMKLKECYPTI-V---SYTAYMKILFLNDRVKEATDVYKEMIQRG-LPPN----CYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 126 ~m~~~~~~p~~-~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
.+.....+.+. . .+......+...|++++|...|++..+.- -.++ ..++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 66443111111 1 12233445678899999999999887631 1123 34677888899999999999999988
Q ss_pred HHHc----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCc
Q 010057 197 MQEA----G-VQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSP 270 (519)
Q Consensus 197 m~~~----g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 270 (519)
..+. + ..+ ...+++.+..+|...|+++.|...+++..+.... .+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------------~~~-------------- 217 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---------------IQN-------------- 217 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------TTC--------------
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---------------cCC--------------
Confidence 7643 1 111 2447778888999999999999998876541100 000
Q ss_pred ccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHH
Q 010057 271 EFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEY 350 (519)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (519)
......++..+...|...|++++|+..|++
T Consensus 218 --------------------------------------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 218 --------------------------------------------------DRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 001123456666777788888888888887
Q ss_pred HHhC----CCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC----ccchhHHHHHHHHhcCCC---cchHHHHhh
Q 010057 351 SVKM----DLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHS----LGVYLGALLIHRLGSARR---PVPAAKIFS 419 (519)
Q Consensus 351 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 419 (519)
..+. +.+....++..+...+.+.|++++|...++...+..-. .....+..+...+...++ +.+|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7761 21223566788888888889999998888888763211 112223333344444454 455555554
Q ss_pred hCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 420 LLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 420 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
.....+.....+..+...|...|++++|.+.|++..
T Consensus 328 ~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 328 KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 432211112334445555555555555555555543
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=1.2e-09 Score=101.58 Aligned_cols=273 Identities=11% Similarity=0.021 Sum_probs=166.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCY----TYTVLMEYLVRAGKYEEALEIFSKMQEAGV-QPDK----AACNIL 212 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~l 212 (519)
....+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345556788888888887776643222222 455666777788888888888887654210 1122 245667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...+...|+++.|...+++..+...
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~------------------------------------------------------- 124 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLIN------------------------------------------------------- 124 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 7788888999999988887654210
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c-cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC--c--CHHHHHH
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQ--L-DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN--L--ERTAYLA 365 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~ 365 (519)
..+.. | ....+..+...+...|++++|...+++..+.... + ....+..
T Consensus 125 -------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 125 -------------------------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp -------------------------HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred -------------------------HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 00000 1 1223444555666777777777777776653211 1 1234666
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCcc-chhHH-----HHHHHHhcCCCcchHHHHhhhCCcCCCC-----chhHHHH
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLG-VYLGA-----LLIHRLGSARRPVPAAKIFSLLPEDQKC-----TATYTAL 434 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l 434 (519)
+...+...|++++|...++......-.++ ...+. ..+..+...|+.++|...++......+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77777788888888888877764311111 11111 2233466788888888888777654221 1245667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 435 IGVYFSAGSADKALKIYKTMCRK----GIHPSL-GTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 435 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..++.+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 77788888888888888877543 222222 2555566777888888888888887766543
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3.7e-09 Score=95.24 Aligned_cols=218 Identities=12% Similarity=0.121 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------hhHHHHHHHHHHCCCCC-ChhhHHHHHHHHH
Q 010057 83 SSMKYVFELMQEKGINIDAVTYTSVMHWLS-------NAGDV-------DGAVNIWEEMKLKECYP-TIVSYTAYMKILF 147 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 147 (519)
++|..+|+...+... -+...|..+...+. +.|+. ++|..+|++..+. +.| +...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 566677777766432 25667776666654 34665 7777777777662 123 4456777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPN-CY-TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCC-KAGETRT 224 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~ 224 (519)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|+++.
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777777787777777763 343 33 67777777777777777777777777643 223334433332222 2577777
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|..+|+...+...
T Consensus 188 A~~~~~~al~~~p------------------------------------------------------------------- 200 (308)
T 2ond_A 188 AFKIFELGLKKYG------------------------------------------------------------------- 200 (308)
T ss_dssp HHHHHHHHHHHHT-------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCC-------------------------------------------------------------------
Confidence 7777666544211
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHhcCCcchHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMD-LNL--ERTAYLALIGILIKLNTFPKVAE 381 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 381 (519)
-+...|..++..+...|+.++|..+|++..+.. ..| ....|..++....+.|+.+.|..
T Consensus 201 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 201 ------------------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp ------------------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 134556666777777888888888888888763 344 34567777888888888888888
Q ss_pred HHHHHHhcC
Q 010057 382 IVEEMTKAG 390 (519)
Q Consensus 382 ~~~~~~~~~ 390 (519)
+++.+.+..
T Consensus 263 ~~~~a~~~~ 271 (308)
T 2ond_A 263 VEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888887653
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=1.7e-10 Score=110.61 Aligned_cols=185 Identities=10% Similarity=-0.020 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRI-SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
++++++.++..... .+.+...+..+...+...|++ ++|.+.|+...+.... +...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666677665422 244677888888888888888 8888888888776432 5778888888888888888888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCH
Q 010057 125 EEMKLKECYPTIVSYTAYMKILFLN---------DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA--------GKY 187 (519)
Q Consensus 125 ~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~ 187 (519)
++..+. .|+...+..+...+... |++++|.+.|++..+.. +-+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888776 46667788888888888 88888888888888753 33577888888888887 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 188 EEALEIFSKMQEAGVQ--PDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 188 ~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
++|...|++..+.... -+...|..+..+|...|++++|...|++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888774210 267788888888888888888888888776643
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=2.4e-10 Score=109.53 Aligned_cols=215 Identities=12% Similarity=-0.017 Sum_probs=154.1
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010057 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRV-KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFS 195 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 195 (519)
++++...+++..... +.+...+..+...+...|++ ++|.+.|++..+.. +-+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666676655442 23677888888899999999 99999999988763 2357889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCC
Q 010057 196 KMQEAGVQPDKAACNILIEKCCKA---------GETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHP 266 (519)
Q Consensus 196 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (519)
...+. .|+...+..+..+|... |++++|...+++..+....
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------------------- 211 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---------------------------- 211 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----------------------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----------------------------
Confidence 99875 57778888888888888 8888888888877664321
Q ss_pred CCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc--------
Q 010057 267 QFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH-------- 338 (519)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 338 (519)
+...+..+..+|...
T Consensus 212 ---------------------------------------------------------~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 212 ---------------------------------------------------------DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ---------------------------------------------------------CHHHHHHHHHHHHHHHHhhcccc
Confidence 233444455555555
Q ss_pred CChhhHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 339 RRRDGALLAFEYSVKMDLN--LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
|++++|+..|++..+.... -+...|..+..+|...|++++|.+.|+...+.. +.+...+..+...+...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888775411 366678888888888888888888888887754 2333444555555555555555555
Q ss_pred HhhhC
Q 010057 417 IFSLL 421 (519)
Q Consensus 417 ~~~~~ 421 (519)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 44443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=4.4e-11 Score=98.93 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR 404 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (519)
...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666777888889999999888877653 3456778888888899999999999999988764 4466777888888
Q ss_pred HhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHH
Q 010057 405 LGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAE 483 (519)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~ 483 (519)
+...|++++|.+.++++... +.+...+..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999877654 3457788899999999999999999999998874 445778888999999999999999
Q ss_pred HHHHHhcccCccc
Q 010057 484 IYRKEKKSIQADA 496 (519)
Q Consensus 484 ~~~~~~~~~~~~~ 496 (519)
.+++++.++.|+.
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 9999998876653
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=4.4e-11 Score=119.33 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=151.0
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHH
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIH 403 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (519)
+...++.+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++.++.. +-+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678889999999999999999999998865 3356779999999999999999999999999875 456778899999
Q ss_pred HHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 010057 404 RLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDA 482 (519)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a 482 (519)
+|...|++++|.+.|++..+..| +...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998877544 57899999999999999999999999999873 33467888999999999999999
Q ss_pred HHHHHHhcccCcccccc
Q 010057 483 EIYRKEKKSIQADALSK 499 (519)
Q Consensus 483 ~~~~~~~~~~~~~~~~~ 499 (519)
.+.++++.++.++....
T Consensus 165 ~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 165 DERMKKLVSIVADQLEK 181 (723)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhHHhh
Confidence 99999999888775544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=1.5e-09 Score=89.51 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34577778888889999999999988877543 367888888999999999999999999987763 3367788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 225 (519)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988763 4477888889999999999999999999988763 34677888999999999999999
Q ss_pred HHHHHHHHHc
Q 010057 226 ILILRYMKEN 235 (519)
Q Consensus 226 ~~~~~~~~~~ 235 (519)
...++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999887664
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.7e-09 Score=100.80 Aligned_cols=231 Identities=11% Similarity=-0.040 Sum_probs=151.0
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC-----C--CCCCHHHHHHHHhc--------CCChH------HHHHHHHHHhhcCC
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL-----P--IKWDSYTVNQVLKT--------HPPME------KAWLFFNWVSRSRG 61 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~-----~--~~p~~~~~~~ll~~--------~~~~~------~A~~~~~~~~~~~~ 61 (519)
.++...+..++.+++++|.++++++ . ..++...|-.++.. ..... ...+.++.+....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~- 92 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ- 92 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC-
Confidence 4667788889999999999999876 2 22333333444331 11111 1224555442111
Q ss_pred CCC-CH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-
Q 010057 62 FNH-DR----FTYTTMLDIFGEAKRISSMKYVFELMQEKGI-NI----DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK- 130 (519)
Q Consensus 62 ~~~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 130 (519)
.+ +. ..+-.....+...|++++|...|+...+... .+ ...++..+...|...|+++.|...+++..+.
T Consensus 93 -~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 93 -KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11 11 1223334456778999999999988765311 11 2457778888888999999999888887543
Q ss_pred ---CC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 131 ---EC-YP-TIVSYTAYMKILFLNDRVKEATDVYKEMIQR----GLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 131 ---~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
+- .+ ...+++.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 11 2456778888889999999999988887652 1111 1346777888888899999999998887651
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010057 201 ----GVQPDKAACNILIEKCCKAGETRTIILILRYMKEN 235 (519)
Q Consensus 201 ----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 235 (519)
+.+....++..+..+|.+.|++++|...+++..+.
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22223567788888888999999999888876663
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.4e-10 Score=98.18 Aligned_cols=195 Identities=11% Similarity=0.009 Sum_probs=116.6
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 292 IDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
.+......+...|++++|...|+........++...+..+..++...|++++|+..|+...+.. +-+...+..+..++.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3344455666677777777777776665543455555556666777777777777777766554 223445666667777
Q ss_pred hcCCcchHHHHHHHHHhcCCCccc-------hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC---chhHHHHHHHHHhc
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGV-------YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---TATYTALIGVYFSA 441 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~ 441 (519)
..|++++|...++...+.. +.+. ..+..+...+...|++++|.+.|++..+..|+ ...|..+..+|...
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 7777777777777776643 2223 33555556666667777777777666655443 44555666665443
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
| ..+++++...+ ..+...+... .....+.+++|..++++..++.|+.
T Consensus 167 ~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 167 G-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp H-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred H-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3 23344444442 2222222222 2233455699999999999987764
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.2e-09 Score=97.08 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQ-------RGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GVQP-DKAACNILI 213 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li 213 (519)
..|++++|..+|++..+ ...+....++..+...|...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554443 111223456777777777888888888887777643 1122 344778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcch
Q 010057 214 EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID 293 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (519)
.+|...|++++|...+++..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~--------------------------------------------------------- 115 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR--------------------------------------------------------- 115 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 88999999999998888765521
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC------CCCc-CHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM------DLNL-ERTAYLAL 366 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 366 (519)
..............+..+...|...|++++|+..|+++.+. +..| ...++..+
T Consensus 116 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 116 --------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred --------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00000000112345666777788888888888888877664 1122 34558888
Q ss_pred HHHHHhcCCcchHHHHHHHHHhc-------CCCc-cchhHHHHHHHHhcCCC------cchHHHHhhhCCcCCC-CchhH
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKA-------GHSL-GVYLGALLIHRLGSARR------PVPAAKIFSLLPEDQK-CTATY 431 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~-~~~~~ 431 (519)
...+...|++++|...++.+.+. ...+ ....+..+...+...+. +..+...++......| ...++
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88999999999999999888753 1122 22233333333333222 2233333333333222 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
..+...|...|++++|.++|++..+
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777778888888888888877664
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=1.5e-08 Score=94.13 Aligned_cols=274 Identities=11% Similarity=0.008 Sum_probs=165.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCC----hhhHH
Q 010057 70 TTMLDIFGEAKRISSMKYVFELMQEKGINIDAV----TYTSVMHWLSNAGDVDGAVNIWEEMKLKEC-YPT----IVSYT 140 (519)
Q Consensus 70 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~ 140 (519)
......+...|++++|...++...+.....+.. +++.+...+...|++++|...+++...... .++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445667888999988888877653222222 456666778888999999998888765311 011 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHH
Q 010057 141 AYMKILFLNDRVKEATDVYKEMIQR----GLP--PN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ----PDKAAC 209 (519)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~ 209 (519)
.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888999999999999887652 222 22 345667888889999999999999988754211 124577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCccCH-HHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCC
Q 010057 210 NILIEKCCKAGETRTIILILRYMKENRLALRY-PVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEG 288 (519)
Q Consensus 210 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (519)
..+...+...|++++|...+++.......+.. ..+...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~----------------------------------------- 216 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN----------------------------------------- 216 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------------------------------------
Confidence 78888999999999999999987653211110 000000
Q ss_pred CCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcCH-
Q 010057 289 PLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQL---DSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLER- 360 (519)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 360 (519)
........+...|+.+.|...+.........+ ....+..+...+...|++++|...++..... +..++.
T Consensus 217 ---~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 217 ---ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 00011223455666677666666654322111 1223445555666666666666666655432 211111
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
..+..+..++...|+.++|...+....
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 134444555556666666666655554
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=2.9e-09 Score=106.26 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...|+.+...|.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4678999999999999999999999999886433 5788999999999999999999999998876322 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
++.+.|++++|++.|++..+.. +-+...|+.+...|...|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999988853 2257789999999999999999999999998753 2256688999999999999999
Q ss_pred HHHHHHHHHH
Q 010057 225 IILILRYMKE 234 (519)
Q Consensus 225 a~~~~~~~~~ 234 (519)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887655
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=1.8e-08 Score=86.33 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFN-HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVN 122 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 122 (519)
|++++|++.|+...+.. + ++...+..+...+...|++++|...++...+.... +...|..+...+...|++++|..
T Consensus 21 ~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 21 KNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp TCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHH
Confidence 66666666666655332 2 45555555666666666666666666666655322 44556666666666666666666
Q ss_pred HHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q 010057 123 IWEEMKLKECYPTI-------VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN---CYTYTVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 123 ~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~ 192 (519)
.|++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...| ..
T Consensus 98 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~-----~~ 169 (228)
T 4i17_A 98 TLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNG-----AD 169 (228)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHH-----HH
Confidence 66666554211 22 33555555566666666666666666653 343 334445555544332 22
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 193 IFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 193 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+++.+...+ ..+...|.... ....+.+++|...++...+..
T Consensus 170 ~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 170 VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 333333321 11233333322 222344588888888877754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=4.5e-10 Score=99.84 Aligned_cols=169 Identities=12% Similarity=0.064 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhC------CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc------C
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKM------DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKA------G 390 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 390 (519)
...++..+...|...|++++|+..|+++.+. +-.| ...++..+...+...|++++|.+.+....+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4567778888888889999999888887754 2222 3445888888888899999998888888754 1
Q ss_pred -CCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC--------CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 010057 391 -HSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED--------QK-CTATYTALIGVYFSAGSADKALKIYKTMCRK--- 457 (519)
Q Consensus 391 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 457 (519)
.+.....+..+...|...|++++|.+.+++.... .| ...++..+..+|...|++++|++++++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567777888888899999988888766443 22 2457788888888999999999998887753
Q ss_pred ---------------------------------------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 458 ---------------------------------------------GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 458 ---------------------------------------------g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+....++..+...|...|++++|..++++..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122446778888999999999999999988664
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=9.3e-09 Score=91.77 Aligned_cols=222 Identities=9% Similarity=0.020 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 010057 151 RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KAACNILIEKCCKAGETRTI 225 (519)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 225 (519)
++++|...|++. ...|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888888776542 22222 35777888888888888888
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCC
Q 010057 226 ILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKN 305 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (519)
...++...+.. ...|+
T Consensus 97 ~~~~~~Al~l~----------------------------------------------------------------~~~g~ 112 (292)
T 1qqe_A 97 VDSLENAIQIF----------------------------------------------------------------THRGQ 112 (292)
T ss_dssp HHHHHHHHHHH----------------------------------------------------------------HHTTC
T ss_pred HHHHHHHHHHH----------------------------------------------------------------HHcCC
Confidence 88877655411 01111
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc-CChhhHHHHHHHHHhCCCCc-C----HHHHHHHHHHHHhcCCcchH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDH-RRRDGALLAFEYSVKMDLNL-E----RTAYLALIGILIKLNTFPKV 379 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a 379 (519)
...+ ..++..+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|
T Consensus 113 ~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 113 FRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 1111 22344555666664 78888888887766531100 1 23466666777777777777
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010057 380 AEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGI 459 (519)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 459 (519)
...|+...+.........+. ....|..+..+|...|++++|+..|++..+.
T Consensus 178 ~~~~~~al~~~~~~~~~~~~---------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 228 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWS---------------------------LKDYFLKKGLCQLAATDAVAAARTLQEGQSE-- 228 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGG---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHhcCCcccHH---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 77777776643211110000 0113455556666666666666666665543
Q ss_pred CCCcc------cHHHHHHHHH--hcCChhHHHHHHHHhcccCcc
Q 010057 460 HPSLG------TFNVLLAGLE--KLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 460 ~p~~~------t~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.|+.. .+..+..+|. ..+++++|...|+++..++|.
T Consensus 229 ~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 23211 2333444443 345566677777666555553
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=3.2e-07 Score=87.84 Aligned_cols=376 Identities=7% Similarity=-0.040 Sum_probs=218.0
Q ss_pred cC-ChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 010057 14 YS-TWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR-ISSMKYVFE 90 (519)
Q Consensus 14 ~~-~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~ 90 (519)
.| +++.|+.+|+++ ..-|. ++.+.+.++|+..+.. .|++..|...+....+.++ .+.+..+|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 377778888766 22233 6788999999988642 5788899888888877763 456677777
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------------cCC
Q 010057 91 LMQEK-GIN-IDAVTYTSVMHWLS----NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL-------------NDR 151 (519)
Q Consensus 91 ~m~~~-~~~-~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------------~~~ 151 (519)
..... |.. .+...|...+..+. ..|+.+.+..+|++........-...|......-.. .+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 76653 432 36677887777654 245678888888888763111111223222221100 112
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG--K-----YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRT 224 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 224 (519)
+..|..+++++...--..+...|...+..-...+ - .+.+..+|+++... .+-+...|...+.-+.+.|+.+.
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 2334444444432100013345555554432211 1 34567888888775 34457788888888889999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcC
Q 010057 225 IILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKK 304 (519)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (519)
|..+++..... |....+......+. +.+... ..+...+. ..
T Consensus 232 ar~i~erAi~~---P~~~~l~~~y~~~~---e~~~~~--------------------------------~~l~~~~~-~~ 272 (493)
T 2uy1_A 232 AKKVVERGIEM---SDGMFLSLYYGLVM---DEEAVY--------------------------------GDLKRKYS-MG 272 (493)
T ss_dssp HHHHHHHHHHH---CCSSHHHHHHHHHT---TCTHHH--------------------------------HHHHHHTC---
T ss_pred HHHHHHHHHhC---CCcHHHHHHHHhhc---chhHHH--------------------------------HHHHHHHH-hh
Confidence 99999998887 33322222111110 000000 00000000 00
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCcchHHHHH
Q 010057 305 NLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIK-LNTFPKVAEIV 383 (519)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~ 383 (519)
..+.. ... .......+|...+..+.+.+..+.|..+|..+ +.. ..+...|......-.. .++.+.|..+|
T Consensus 273 ~~~~~-----~~~--~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 273 EAESA-----EKV--FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred ccchh-----hhh--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 00000 000 00012245666666666677899999999988 321 2344444432222222 34699999999
Q ss_pred HHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 384 EEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCR 456 (519)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 456 (519)
+...+.. +.++..+...++...+.|+.+.|..+|+++.. ....|...+..-...|+.+.+.++++++..
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9998753 33344556677777888999999999999853 367788888887888999999999988774
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=5.9e-09 Score=91.17 Aligned_cols=183 Identities=11% Similarity=0.005 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010057 309 IDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDL-NLERTAYLALIGILIKLNTFPKVAEIVEEMT 387 (519)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 387 (519)
+...|+++...+ .++...+..+..++...|++++|++++......+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 44555566888899999999999999999876653 2355678889999999999999999999998
Q ss_pred hcCCCc-----cchhHHHHHHHH----hcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 388 KAGHSL-----GVYLGALLIHRL----GSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 388 ~~~~~~-----~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
+.. | +..+...|..++ ...++..+|..+|+++.+..|+..+-..++.++.+.|++++|.+.++.+.+.-
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 763 5 345555555552 23448999999999998877753344455558999999999999999776531
Q ss_pred ---------CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 459 ---------IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 459 ---------~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
-+-|+.++..++......|+ +|.++++++++..|++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 13457777666666666786 8999999999998863
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=5e-08 Score=75.37 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444444444444444444332 1133344444444444555555555555444432 2234444444555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 184 AGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 184 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.|++++|.++++.+.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 12334444555555555555555555554443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=4.7e-08 Score=75.52 Aligned_cols=130 Identities=14% Similarity=0.209 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
.|..+...+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...|+++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4677788888889999999999988876433 67788888888889999999999999887764 235677888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999888753 336778888888999999999999999888764
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=8.3e-09 Score=92.11 Aligned_cols=178 Identities=12% Similarity=-0.001 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHhcCCcchHH
Q 010057 306 LVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DLNLE-RTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~ 380 (519)
++.|...+... ...|...|++++|++.|.+..+. +-+++ ..+|..+..+|.+.|++++|.
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 44677789999999999887654 32222 456899999999999999999
Q ss_pred HHHHHHHhcCC---Cc--cchhHHHHHHHHhcC-CCcchHHHHhhhCCcCCC---C----chhHHHHHHHHHhcCCHHHH
Q 010057 381 EIVEEMTKAGH---SL--GVYLGALLIHRLGSA-RRPVPAAKIFSLLPEDQK---C----TATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 381 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A 447 (519)
..++..++... .+ ....+..+...|... |++++|...|++..+..| + ..+|+.+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99998875321 11 134677888889996 999999999987755322 1 34688899999999999999
Q ss_pred HHHHHHHHHCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHhcccCccccc
Q 010057 448 LKIYKTMCRKGIHPSLG------TFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 448 ~~~~~~m~~~g~~p~~~------t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 498 (519)
++.|++..+........ .+..+..++...|++++|...+++..++.|+...
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999874322221 4666777889999999999999999999887554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=1.3e-08 Score=89.32 Aligned_cols=168 Identities=11% Similarity=-0.040 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC--CccchhHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE---RTAYLALIGILIKLNTFPKVAEIVEEMTKAGH--SLGVYLGA 399 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 399 (519)
...+......+...|++++|+..|+.+.+... -+ ...+..+..++.+.|++++|...|+..++... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 33444445555666666666666666665431 11 34455666666666666666666666665421 11223344
Q ss_pred HHHHHHhc--------CCCcchHHHHhhhCCcCCCC-chhH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 010057 400 LLIHRLGS--------ARRPVPAAKIFSLLPEDQKC-TATY-----------------TALIGVYFSAGSADKALKIYKT 453 (519)
Q Consensus 400 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~-~~~~-----------------~~li~~~~~~g~~~~A~~~~~~ 453 (519)
.+..++.. .|++++|...|+++.+..|+ ...+ ..+...|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45555555 66666676666665544332 2233 5668889999999999999999
Q ss_pred HHHCCCCCC----cccHHHHHHHHHhc----------CChhHHHHHHHHhcccCcc
Q 010057 454 MCRKGIHPS----LGTFNVLLAGLEKL----------GRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 454 m~~~g~~p~----~~t~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~ 495 (519)
..+. .|+ ...+..+..+|... |++++|...++++.+..|+
T Consensus 174 ~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 174 VFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9887 344 34566777778766 8889999999999888775
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=4.8e-08 Score=83.37 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCCcchHHHHhhhCCcCCCCc-hhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----cc
Q 010057 408 ARRPVPAAKIFSLLPEDQKCT-ATY-----------------TALIGVYFSAGSADKALKIYKTMCRKGIHPSL----GT 465 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~~~~~-~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 465 (519)
.|+.++|...|+++.+..|+. ..+ ..+...|.+.|++++|+..|+++++. .|+. ..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 186 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDA 186 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHH
Confidence 456666666666665544432 222 34567788999999999999999987 4543 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCcccccc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSK 499 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 499 (519)
+..+..++.+.|++++|.+.++.+....|+....
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 7888899999999999999999998887776554
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=9.5e-08 Score=83.56 Aligned_cols=180 Identities=8% Similarity=-0.045 Sum_probs=116.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010057 49 AWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDAVTYTSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 49 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 127 (519)
|+..|+..... + .++..++..+..++...|++++|.+++......+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455544321 1 45566666777778888888888888887766543 125667777788888888888888888888
Q ss_pred HHCCCCC-----ChhhHHHHHHHHH--h--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 128 KLKECYP-----TIVSYTAYMKILF--L--NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 128 ~~~~~~p-----~~~~~~~li~~~~--~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
.+. .| +..+...|..++. . .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 45 2455555555532 2 33788888888887664 4554444455557788888888888887665
Q ss_pred Hc-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 199 EA-----G----VQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 199 ~~-----g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
+. . -+-|..++..+|......|+ .|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 42 0 02244566566666666676 6777787777754
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=9.4e-09 Score=86.57 Aligned_cols=127 Identities=11% Similarity=-0.079 Sum_probs=79.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCC-
Q 010057 366 LIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGS- 443 (519)
Q Consensus 366 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~- 443 (519)
+..++.+.|++++|...|+..++.. +.+...+..+...+...|++++|...|+++.+..| +..+|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 6667777777777777777777654 34566667777777777777777777777665433 46677777777655443
Q ss_pred -HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 444 -ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 444 -~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+.+...++.... ..|....+.....++...|++++|...+++..++.|+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3334444444431 1222223333444556677788888888888777775
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=1.7e-08 Score=99.47 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 010057 303 KKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEI 382 (519)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 382 (519)
.|+.++|...+++..+... -+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4677778888877654432 245677778888888888888888888888764 33566788888888888888888888
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 010057 383 VEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSA---GSADKALKIYKTMCRKG 458 (519)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 458 (519)
++...+.. +.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+..++... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88888764 34566777888888888888888888887766433 466778888888888 88888888888888773
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.83 E-value=5.4e-07 Score=78.82 Aligned_cols=172 Identities=12% Similarity=-0.002 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CC-Chhh
Q 010057 64 HDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID---AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC-YP-TIVS 138 (519)
Q Consensus 64 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~ 138 (519)
.+...+-.+...+.+.|++++|...|+.+.+.... + ...+..+..++.+.|++++|...|++..+... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555666666667777777777777777665322 2 45666677777777777777777777766421 11 1334
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHH
Q 010057 139 YTAYMKILFL--------NDRVKEATDVYKEMIQRGLPPN-CYTY-----------------TVLMEYLVRAGKYEEALE 192 (519)
Q Consensus 139 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~-~~~~-----------------~~li~~~~~~~~~~~a~~ 192 (519)
+..+..++.. .|++++|...|++..+.. |+ .... ..+...|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5556666666 777777777777776642 22 2222 456778889999999999
Q ss_pred HHHHHHHcCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCc
Q 010057 193 IFSKMQEAGVQ-P-DKAACNILIEKCCKA----------GETRTIILILRYMKENRLA 238 (519)
Q Consensus 193 ~~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~ 238 (519)
.|+.+.+.... + ....+..+..+|... |++++|...++.+.+..+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 99998875321 1 234677778888866 8889999999998876543
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=1.2e-06 Score=73.84 Aligned_cols=178 Identities=10% Similarity=0.001 Sum_probs=145.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhhHHHH
Q 010057 48 KAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAG----DVDGAVNI 123 (519)
Q Consensus 48 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 123 (519)
+|++.|+...+ .-++..+..+...|...+++++|.+.|+...+.| +...+..|-..|.. + +.++|...
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46777887753 3578888889999999999999999999998875 66778888888877 6 89999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFL----NDRVKEATDVYKEMIQRGLP-PNCYTYTVLMEYLVR----AGKYEEALEIF 194 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~~~~~~a~~~~ 194 (519)
|++..+.| +..++..|-..|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 67788888888887 88999999999999887521 026788888889988 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCCc
Q 010057 195 SKMQEAGVQPDKAACNILIEKCCKA-G-----ETRTIILILRYMKENRLA 238 (519)
Q Consensus 195 ~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 238 (519)
+...+. ..+...+..|..+|... | ++++|...|+...+.|..
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999886 23445677777777654 3 899999999998887754
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=1.1e-06 Score=77.64 Aligned_cols=227 Identities=10% Similarity=0.057 Sum_probs=177.5
Q ss_pred hhhhhHHhhhccCCh-hHHHHHHHhC-CCCCCHHH-HH---HHHhcCC--ChHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 010057 3 DTISNVYKILKYSTW-DSAQDLLKNL-PIKWDSYT-VN---QVLKTHP--PMEKAWLFFNWVSRSRGFNHDRFTYTTMLD 74 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~-~~a~~~~~~~-~~~p~~~~-~~---~ll~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 74 (519)
++.+.+.+..+.|.. ++|+++++.+ .+.|+.++ |+ .+|...+ ++++++++++.+.... +.+..+|+.--.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~ 111 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHH
Confidence 455666666677766 4799999987 66677655 33 3455567 9999999999998654 556677777666
Q ss_pred HH----Hhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--hHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 75 IF----GEA---KRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD--GAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 75 ~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
.+ ... ++++++..+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 66 555 7899999999999987655 8889998888888889988 999999999987544 77888877777
Q ss_pred HHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 010057 146 LFLNDR------VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY-EEALEIFSKMQEAG--VQPDKAACNILIEKC 216 (519)
Q Consensus 146 ~~~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g--~~p~~~~~~~li~~~ 216 (519)
+.+.+. ++++++.++++..... -|...|+-+-..+.+.|.. +.+..+...+.+.+ -..+...+..+..+|
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 777776 8999999999998753 3888999988888888874 44555666655432 134778899999999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010057 217 CKAGETRTIILILRYMKE 234 (519)
Q Consensus 217 ~~~g~~~~a~~~~~~~~~ 234 (519)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 999999999999999876
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=7.7e-07 Score=75.82 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQEAGVQPD----KAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.+...|.+.|++++|...|+.+.+.. |+ ...+..+..+|.+.|++++|.+.++.+...++.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 45667889999999999999998752 33 246788899999999999999999988887654
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.8e-07 Score=93.88 Aligned_cols=175 Identities=9% Similarity=-0.085 Sum_probs=141.6
Q ss_pred hcCCChHHHHHHHHHHhh-----c-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 41 KTHPPMEKAWLFFNWVSR-----S-RGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~-----~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
...|++++|++.|+.+.+ . ...+.+...+..+...+.+.|++++|.+.|+...+.... +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 445999999999998861 0 112456778999999999999999999999999986443 778999999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIF 194 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 194 (519)
|++++|...|++..+.... +...|..+..++.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999877322 57788999999999999999 99999998863 336778999999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 010057 195 SKMQEAGVQPD-KAACNILIEKCCKAGE 221 (519)
Q Consensus 195 ~~m~~~g~~p~-~~~~~~li~~~~~~g~ 221 (519)
++..+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 988764 565 4577777777766554
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=5.7e-07 Score=79.83 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHH-
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTA- 141 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~- 141 (519)
+.+...+..+...+.+.|++++|...|+...+.... +...+..+...+.+.|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 455677888888899999999999999999887543 6788999999999999999999999988765 455443332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQ-PDKAACNILIEKCCKAG 220 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 220 (519)
....+...++.++|...|++..... +.+...+..+...+...|++++|...|.++.+.... .+...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667788888999999988863 346789999999999999999999999999885322 12568999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 010057 221 ETRTIILILRYMKE 234 (519)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (519)
+.+.|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999988886543
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=4.7e-07 Score=76.06 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=70.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK 186 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 186 (519)
+..++.+.|++++|+..|++..+... -+...+..+..++...|++++|...|++..+.. +-+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 66666677777777777777665532 145666667777777777777777777766642 2245566666666554433
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010057 187 --YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENR 236 (519)
Q Consensus 187 --~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 236 (519)
.+.+...+..... ..|....+.....++...|++++|...|++..+..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2334444444321 12222233334445555667777777777665543
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=5e-08 Score=87.74 Aligned_cols=167 Identities=8% Similarity=-0.043 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CCCc-cchh
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKM----DLNL-ERTAYLALIGILIKLNTFPKVAEIVEEMTKA----GHSL-GVYL 397 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 397 (519)
|......|...|++++|...|.+..+. +-.+ -..+|..+...|.+.|++++|...++...+. |-.. ....
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445566667777777777666543 1111 1234666777777777777777777766542 1111 1345
Q ss_pred HHHHHHHHhcCCCcchHHHHhhhCCcCCC---C----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-ccc
Q 010057 398 GALLIHRLGSARRPVPAAKIFSLLPEDQK---C----TATYTALIGVYFSAGSADKALKIYKTMCRK----GIHPS-LGT 465 (519)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t 465 (519)
+..+...|.. |++++|.+.|++..+..+ + ..+++.+...|.+.|++++|++.|++..+. +..+. ..+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 5566666666 777777777765543211 1 345666777777777777777777776653 11111 124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 466 FNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 466 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+..+..++...|++++|...+++.. +.|..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 4444555566677777777777777 66653
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=9.5e-08 Score=84.88 Aligned_cols=163 Identities=14% Similarity=0.062 Sum_probs=130.5
Q ss_pred ccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHH-H
Q 010057 323 LDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGAL-L 401 (519)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 401 (519)
.+...+..+...+...|++++|+..|+.+.+.. +-+...+..+...+.+.|++++|...++.+.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 345566677778889999999999999998765 3456778889999999999999999999987754 44333222 2
Q ss_pred HHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhcC
Q 010057 402 IHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS---LGTFNVLLAGLEKLG 477 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l~~~~~~~g 477 (519)
...+...++.++|.+.+++.... +.+...+..+..+|...|++++|+..|.++.+.. |+ ...+..+...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcC
Confidence 33366778888899988877665 4457889999999999999999999999999873 43 567889999999999
Q ss_pred ChhHHHHHHHHhc
Q 010057 478 RVSDAEIYRKEKK 490 (519)
Q Consensus 478 ~~~~a~~~~~~~~ 490 (519)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999887653
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=8.8e-08 Score=96.09 Aligned_cols=184 Identities=8% Similarity=-0.118 Sum_probs=145.7
Q ss_pred HHhcCCHHHHHHHHHHHH--------hcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 300 LLKKKNLVAIDSLLSGIM--------DKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
....++.++|...++... ... ..+...+..+..++...|++++|+..|+++.+.. +-+...|..+..++.
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 378899999999999887 222 2355678888889999999999999999998765 346677889999999
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKI 450 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 450 (519)
..|++++|.+.|+...+.. +.+...+..+..+|.+.|++++ .+.|+++.+.. .+...|..+..+|.+.|++++|++.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999875 4567788899999999999999 99999887654 4577899999999999999999999
Q ss_pred HHHHHHCCCCCC-cccHHHHHHHHHhcCC--------hhHHHHHHHHh
Q 010057 451 YKTMCRKGIHPS-LGTFNVLLAGLEKLGR--------VSDAEIYRKEK 489 (519)
Q Consensus 451 ~~~m~~~g~~p~-~~t~~~l~~~~~~~g~--------~~~a~~~~~~~ 489 (519)
|++..+. .|+ ...+..+..++...+. +++|.+.++.+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9998876 455 5566667777655444 44455555443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=2.1e-07 Score=75.90 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH-HH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI-LF 147 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~ 147 (519)
+......+.+.|++++|...|+...+.... +...+..+...+...|++++|...|++.... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344455566677777777777766654222 4566677777777777777777777766544 2333222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTII 226 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 226 (519)
..+...+|...|++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566777766642 2246677777777777777777777777777653222 2456777777777777777777
Q ss_pred HHHHHHH
Q 010057 227 LILRYMK 233 (519)
Q Consensus 227 ~~~~~~~ 233 (519)
..|+...
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=8e-07 Score=74.86 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC----CcchHHHHHHH
Q 010057 310 DSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLN----TFPKVAEIVEE 385 (519)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 385 (519)
...|....+.+ +...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|+.
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 34444444443 56667777777888899999999999998876 45667777777777 6 89999999999
Q ss_pred HHhcCCCccchhHHHHHHHHhc----CCCcchHHHHhhhCCcCCCC---chhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010057 386 MTKAGHSLGVYLGALLIHRLGS----ARRPVPAAKIFSLLPEDQKC---TATYTALIGVYFS----AGSADKALKIYKTM 454 (519)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m 454 (519)
..+.| ++..+..|...|.. .+++++|.+.|++..+..+. +..+..|...|.. .+++++|++.|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98865 45566777777776 88999999999998887663 7888999999998 88999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhc-C-----ChhHHHHHHHHhccc
Q 010057 455 CRKGIHPSLGTFNVLLAGLEKL-G-----RVSDAEIYRKEKKSI 492 (519)
Q Consensus 455 ~~~g~~p~~~t~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 492 (519)
.+. ..+...+..+...|... | ++++|..++++..+.
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 887 33555777777777543 3 899999999988665
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=2.3e-05 Score=75.01 Aligned_cols=363 Identities=9% Similarity=0.015 Sum_probs=216.6
Q ss_pred hhhhHHhhhccCChhHHHHHHHhC-CCCCCHHHHHHHHhcC---C-ChHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHH
Q 010057 4 TISNVYKILKYSTWDSAQDLLKNL-PIKWDSYTVNQVLKTH---P-PMEKAWLFFNWVSRSRGFN-HDRFTYTTMLDIFG 77 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~---~-~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~ 77 (519)
+..+.......|+++.+.++|++. ...|+...|..-+.-. + ..+....+|+.....-|.. ++...|...+..+.
T Consensus 17 vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 17 IMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 344455555668999999999987 6668998888776532 3 3456777888887666644 47788998888764
Q ss_pred ----hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhhHHHHHHHHHHCCCCCChhhHH
Q 010057 78 ----EAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSN-------------AGDVDGAVNIWEEMKLKECYPTIVSYT 140 (519)
Q Consensus 78 ----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~~~~p~~~~~~ 140 (519)
..++.+.+..+|+...+....--...|......-.. .+.+..|..+++++...-...+...|.
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~ 176 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 346788899999999885322112233322221111 122334455555443220001334566
Q ss_pred HHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010057 141 AYMKILFLND--R-----VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILI 213 (519)
Q Consensus 141 ~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 213 (519)
..+..-...+ - .+.+..+|++++.. ++.+...|...+..+.+.|+.++|..+|++.... +.+...+.
T Consensus 177 ~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~--- 250 (493)
T 2uy1_A 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL--- 250 (493)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH---
T ss_pred HHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH---
Confidence 5555433221 1 34577899998875 3556888988899999999999999999999987 33332222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcch
Q 010057 214 EKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSID 293 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (519)
.|+...+.+.. ++.+.+.-... ..+.. ... .......++
T Consensus 251 -~y~~~~e~~~~---~~~l~~~~~~~----------------~~~~~-----------~~~----------~~~~~~~lw 289 (493)
T 2uy1_A 251 -YYGLVMDEEAV---YGDLKRKYSMG----------------EAESA-----------EKV----------FSKELDLLR 289 (493)
T ss_dssp -HHHHHTTCTHH---HHHHHHHTC-----------------------------------------------CHHHHHHHH
T ss_pred -HHHhhcchhHH---HHHHHHHHHhh----------------ccchh-----------hhh----------cccccHHHH
Confidence 23333222222 33322211000 00000 000 000001133
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH--HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVIS--TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILI 371 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (519)
-..+....+.++.+.|..+|...... ..+...|. +.+...+ .++.+.|..+|+...+.- +-++..+...++...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34445555677899999999988222 23444443 3333222 236999999999988753 223444566677778
Q ss_pred hcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
+.|+.+.|..+|+.+. .....+...+..-...|+.+.+.+++++..
T Consensus 366 ~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8899999999999972 246677777777777899888888877553
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=1.5e-08 Score=80.13 Aligned_cols=125 Identities=7% Similarity=-0.001 Sum_probs=63.1
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
.+...|++++|+..+....... +-+...+..+...|.+.|++++|.+.|+..++.. +.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~------------------- 64 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERD------------------- 64 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-------------------
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-------------------
Confidence 3444556666666666554321 1122234455666666666666666666666543 223
Q ss_pred HHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH-HHHHhccc
Q 010057 414 AAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI-YRKEKKSI 492 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 492 (519)
+.+|..+..+|.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|.+ ++++..++
T Consensus 65 --------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 65 --------------PKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555442 1223444455555555555544333 23555544
Q ss_pred Cc
Q 010057 493 QA 494 (519)
Q Consensus 493 ~~ 494 (519)
.|
T Consensus 130 ~P 131 (150)
T 4ga2_A 130 FP 131 (150)
T ss_dssp ST
T ss_pred Cc
Confidence 44
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=5.1e-07 Score=88.93 Aligned_cols=152 Identities=9% Similarity=-0.059 Sum_probs=78.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.... +...+..+..++...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555666665554221 234555666666666666666666666666654322 455566666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 010057 124 WEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA---GKYEEALEIFSKMQEA 200 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~ 200 (519)
|++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66655542 1134556666666666666666666666665542 22455556666666666 6666666666666554
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=3.5e-07 Score=77.18 Aligned_cols=145 Identities=10% Similarity=-0.058 Sum_probs=94.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 330 TIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
.+...+...|++++|+..|+... .|+...+..+...+...|++++|...+....+.. +.+...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34445566677777777776552 4556666677777777777777777777766654 334556666666677777
Q ss_pred CcchHHHHhhhCCcCCC-C----------------chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 010057 410 RPVPAAKIFSLLPEDQK-C----------------TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472 (519)
Q Consensus 410 ~~~~A~~~~~~~~~~~~-~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 472 (519)
++++|.+.|++..+..| + ...|..+..+|.+.|++++|.+.|++..+. .|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~--------- 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP--------- 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG---------
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc---------
Confidence 77777777665544322 1 267888899999999999999999998877 4443
Q ss_pred HHhcCChhHHHHHHHHhccc
Q 010057 473 LEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 473 ~~~~g~~~~a~~~~~~~~~~ 492 (519)
..+..++|...+++....
T Consensus 155 --~~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 155 --RHSKIDKAMECVWKQKLY 172 (213)
T ss_dssp --GGGHHHHHHHHHHTTCCC
T ss_pred --ccchHHHHHHHHHhcccc
Confidence 223455555555544433
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=1.1e-05 Score=71.93 Aligned_cols=207 Identities=9% Similarity=-0.040 Sum_probs=143.8
Q ss_pred HHHhCCCCCCHHHHHHHHhcCCC-hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 010057 23 LLKNLPIKWDSYTVNQVLKTHPP-MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDA 101 (519)
Q Consensus 23 ~~~~~~~~p~~~~~~~ll~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 101 (519)
-++.-...|+..+...+...+|- .+.-......-. +.....+...+..+...|++++|.+.+....+.....+.
T Consensus 36 ~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~ 110 (293)
T 2qfc_A 36 RIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSD-----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp HHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCcCHHHHhccccccc-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh
Confidence 33333456777777777666643 222222211110 223445667788889999999999999888775332111
Q ss_pred -----HHHHHHHHHHHhcCChhhHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC
Q 010057 102 -----VTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC---YPT--IVSYTAYMKILFLNDRVKEATDVYKEMIQR-GLPPN 170 (519)
Q Consensus 102 -----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 170 (519)
..+..+...+...|++++|...+++...... .+. ..+|+.+...|...|++++|...|++..+. ...|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~ 190 (293)
T 2qfc_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc
Confidence 2344466677888999999999999875421 111 447889999999999999999999998731 01122
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010057 171 -----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KAACNILIEKCCKAGETRTI-ILILRYMKE 234 (519)
Q Consensus 171 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 234 (519)
..+++.+...|...|++++|...+++..+. +.... ..+|..+..+|.+.|++++| ...++....
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 258889999999999999999999987643 11111 56888999999999999999 777776554
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=4.8e-07 Score=73.74 Aligned_cols=156 Identities=10% Similarity=0.003 Sum_probs=105.5
Q ss_pred HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh
Q 010057 39 VLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHW-LSNAGDV 117 (519)
Q Consensus 39 ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~ 117 (519)
.+...|++++|...|+...+.. +.+...+..+...+...|++++|...++...+.. |+...+..+... +...++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 3344578888888888765432 4466778888888888888888888888776653 244333322211 1222333
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010057 118 DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSK 196 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 196 (519)
..|...|++..+... -+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 456777777776522 256778888888888888888888888888753322 355778888888888888888888876
Q ss_pred HHH
Q 010057 197 MQE 199 (519)
Q Consensus 197 m~~ 199 (519)
...
T Consensus 170 al~ 172 (176)
T 2r5s_A 170 QLY 172 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=7.5e-07 Score=79.44 Aligned_cols=163 Identities=8% Similarity=0.027 Sum_probs=97.3
Q ss_pred HHHHhccCChhhHHHHHHHHHhCC-CCcCHH----HHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-cc----chhHHHH
Q 010057 332 IEVNCDHRRRDGALLAFEYSVKMD-LNLERT----AYLALIGILIKLNTFPKVAEIVEEMTKAGHS-LG----VYLGALL 401 (519)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 401 (519)
+..+...|++++|...++...+.. ..|+.. .+..+...+...+++++|...+....+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334455555555555555555432 112211 1223444444445566666666665552211 11 1145555
Q ss_pred HHHHhcCCCcchHHHHhhhCCc-------CCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-cccHHH
Q 010057 402 IHRLGSARRPVPAAKIFSLLPE-------DQK-CTATYTALIGVYFSAGSADKALKIYKTMCRK----GIHPS-LGTFNV 468 (519)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ 468 (519)
...|...|++++|...|+++.+ ..+ ...+|..+...|.+.|++++|++.+++..+. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5566666666666665554431 111 1347888999999999999999999988754 22222 567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHhcccCc
Q 010057 469 LLAGLEKLGR-VSDAEIYRKEKKSIQA 494 (519)
Q Consensus 469 l~~~~~~~g~-~~~a~~~~~~~~~~~~ 494 (519)
+..+|.+.|+ +++|.+.++++.++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8889999995 6999999998876643
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=1.6e-07 Score=74.25 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|...|++..+.. +-+..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444555555555555544443211 34444445555555555555555555544431 11334444444455555
Q ss_pred CCHHH
Q 010057 185 GKYEE 189 (519)
Q Consensus 185 ~~~~~ 189 (519)
|++++
T Consensus 113 ~~~~~ 117 (150)
T 4ga2_A 113 DVTDG 117 (150)
T ss_dssp CSSSS
T ss_pred CChHH
Confidence 54443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=3e-06 Score=71.41 Aligned_cols=141 Identities=12% Similarity=0.031 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA 184 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 184 (519)
..+...+...|++++|...|++. +.|+...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 33444455555555555555544 23355555555555555666666666655555432 22445555555566666
Q ss_pred CCHHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 010057 185 GKYEEALEIFSKMQEAG--------------VQP-DKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQ 249 (519)
Q Consensus 185 ~~~~~a~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 249 (519)
|++++|.+.|+...+.. ..| ....+..+..+|.+.|++++|...++...+.........+..++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHH
Confidence 66666666665555431 111 114555666666666666666666666665554433333333333
Q ss_pred H
Q 010057 250 T 250 (519)
Q Consensus 250 ~ 250 (519)
.
T Consensus 165 ~ 165 (213)
T 1hh8_A 165 C 165 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=2.4e-07 Score=72.87 Aligned_cols=100 Identities=12% Similarity=-0.060 Sum_probs=74.4
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGL 473 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~ 473 (519)
...+..+...+.+.|++++|...|+++.... .++..|..+..+|...|++++|++.|++..+.. +.++..|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 3455556666777777777777777766543 356778888888888888888888888888773 33567777788888
Q ss_pred HhcCChhHHHHHHHHhcccCcc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...|++++|...|++..++.|+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888877665
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=7.5e-05 Score=65.98 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc---CC
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAG--DVDGAVNIWEEMKLKECYPTIVSYTAYMKIL----FLN---DR 151 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---~~ 151 (519)
..++|.++++.+...+.. +...|+.--..+...| +++++++.++.+.....+ +..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 345677777776665433 4455666556666666 677777777776665322 344454333333 333 56
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE--EALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+++++++++.+.+.. +-+..+|+.-.-.+.+.+.++ ++++.++.+.+.... |...|+--.......+.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 677777777776653 235666666555556666666 666777766665332 55555544444444443
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=3.3e-06 Score=75.75 Aligned_cols=198 Identities=14% Similarity=0.070 Sum_probs=139.9
Q ss_pred cCChhHHHHHHHhC-CCCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010057 14 YSTWDSAQDLLKNL-PIKWDSYTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELM 92 (519)
Q Consensus 14 ~~~~~~a~~~~~~~-~~~p~~~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 92 (519)
.|++++|.+++++. ...+.. ++...++++.|...|... ...|...|++++|...|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-----~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-----FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-----SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-----ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHH
Confidence 46677777777765 111110 111136777777777654 45677889999999988877
Q ss_pred HhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010057 93 QEK----GINI-DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYP-TIVSYTAYMKILFLNDRVKEATDVYKEM 162 (519)
Q Consensus 93 ~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m 162 (519)
.+. +-.+ -..+|+.+...|...|++++|+..|++..+. |-.+ -..+++.+...|.. |++++|+..|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 1111 1347888889999999999999999987543 2111 13577888888888 9999999999987
Q ss_pred HHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 163 IQR----GLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPDK-AACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 163 ~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
.+. |-.+ ...+++.+...|.+.|++++|+..|++.... +..+.. .++..+..++...|+++.|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 753 1110 1457888899999999999999999988753 222222 26667777888889999999999988
Q ss_pred H
Q 010057 233 K 233 (519)
Q Consensus 233 ~ 233 (519)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=2.1e-07 Score=70.91 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=59.5
Q ss_pred HHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh
Q 010057 401 LIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRV 479 (519)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~ 479 (519)
....|.+.|++++|.+.|++..+. +.+...|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..++...|++
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 334444444444444444443332 2345667777777777777777777777777663 33456677777777777777
Q ss_pred hHHHHHHHHhcccCccc
Q 010057 480 SDAEIYRKEKKSIQADA 496 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~~ 496 (519)
++|.+.|++..+++|+.
T Consensus 98 ~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 77777777777776643
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=6.6e-06 Score=73.24 Aligned_cols=166 Identities=12% Similarity=-0.021 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----hhh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGI-NIDA----VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY-PT----IVS 138 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~ 138 (519)
+...+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|+..|++....... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778899999999999999887432 2222 13344666777788999999999999874322 22 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HH
Q 010057 139 YTAYMKILFLNDRVKEATDVYKEMIQ----R-GLPPN-CYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQPD-KA 207 (519)
Q Consensus 139 ~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~ 207 (519)
++.+...|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999884 1 11222 237888999999999999999999987642 32333 56
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 010057 208 ACNILIEKCCKAGE-TRTIILILRYMKE 234 (519)
Q Consensus 208 ~~~~li~~~~~~g~-~~~a~~~~~~~~~ 234 (519)
+|..+..+|.+.|+ +++|...+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999995 6999999887654
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1.1e-06 Score=69.08 Aligned_cols=101 Identities=6% Similarity=-0.121 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHH
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYF 439 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~ 439 (519)
..+..+...+.+.|++++|...|+...+.. +.++..+..+..+|...|++++|...|++..... .++..|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 447777788888999999999999998875 4567788888899999999999999998887654 45789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.|++++|++.|++..+. .||..
T Consensus 116 ~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999987 46653
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.3e-06 Score=77.84 Aligned_cols=166 Identities=7% Similarity=-0.012 Sum_probs=117.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhCCCCcC-H----HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCC-cc----chh
Q 010057 328 ISTIIEVNCDHRRRDGALLAFEYSVKMDLNLE-R----TAYLALIGILIKLNTFPKVAEIVEEMTKAGHS-LG----VYL 397 (519)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 397 (519)
+...+..+...|++++|++.+....+...... . ..+..+...+...|++++|...+....+.... .+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44455667788888888888887776532211 1 12334555667778888998888888753211 11 346
Q ss_pred HHHHHHHHhcCCCcchHHHHhhhCCc---CCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-cc
Q 010057 398 GALLIHRLGSARRPVPAAKIFSLLPE---DQKC-----TATYTALIGVYFSAGSADKALKIYKTMCRKG----IHPS-LG 464 (519)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 464 (519)
++.+...|...|++++|...|++..+ ..|+ ..+|..+..+|.+.|++++|++.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77788888889999988888876642 1222 2588899999999999999999999887542 1111 55
Q ss_pred cHHHHHHHHHhcCChhHH-HHHHHHhcccC
Q 010057 465 TFNVLLAGLEKLGRVSDA-EIYRKEKKSIQ 493 (519)
Q Consensus 465 t~~~l~~~~~~~g~~~~a-~~~~~~~~~~~ 493 (519)
++..+..+|.+.|++++| ..++++..++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 778888899999999999 88888876653
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=8.9e-08 Score=75.40 Aligned_cols=93 Identities=6% Similarity=-0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 441 (519)
+..+...+.+.|++++|...|+...+.. +.+...+..+..+|...|++++|...|++..... .++..|..+..+|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 4445555555555555555555555443 2233344444444444444444444444443321 2234444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 010057 442 GSADKALKIYKTMCR 456 (519)
Q Consensus 442 g~~~~A~~~~~~m~~ 456 (519)
|++++|++.|++..+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=5.5e-07 Score=73.45 Aligned_cols=132 Identities=9% Similarity=0.043 Sum_probs=91.5
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHH-HhcCCCc--
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHR-LGSARRP-- 411 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 411 (519)
+...|++++|+..++...+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345678888888888877654 3456778888888888888888888888887754 3355566666666 6677777
Q ss_pred chHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 010057 412 VPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLL 470 (519)
Q Consensus 412 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~ 470 (519)
++|...++.+....| +...|..+...|...|++++|+..|++..+. .|+......++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 888888877665433 4667778888888888888888888888876 34444433333
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=3.8e-07 Score=74.42 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=102.0
Q ss_pred HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHH-HHhcCCH--HH
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGV-YFSAGSA--DK 446 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~-~~~~g~~--~~ 446 (519)
...|++++|...+....+.. +.+...+..+...|...|++++|...|++.... +.+...|..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45688999999999988765 456778889999999999999999999988765 3457788888888 8889998 99
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 447 ALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 447 A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++.|++..+.. +.+...+..+...|...|++++|...++++.++.|+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999874 3346778888899999999999999999999988864
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=9.1e-06 Score=65.09 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
.+..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555554432 1134455555555555555555555555555432 224455555555566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQEAGVQPDKAAC--NILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
..|++++|...|++..+... .+...+ ......+...|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 66666666666665554321 122233 222233455566666666655443
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=1e-05 Score=60.98 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444555555555555555544332 1133444455555555555555555555554431 22344455555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~ 199 (519)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=1.4e-05 Score=64.04 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...+..+...+...|++++|...|+...+.... +..++..+...+...|++++|...|++..+.. +.+...|..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456788888899999999999999998886433 68889999999999999999999999988763 2367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYT--VLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+...|++++|...|++..+.. +.+...+. .+...+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998863 22455553 344447788999999999887654
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=1.2e-05 Score=60.54 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 56788888899999999999999999887643 367888899999999999999999999988763 3367788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR 183 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 183 (519)
+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999988753 2345555555555443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=3.1e-06 Score=70.60 Aligned_cols=157 Identities=8% Similarity=-0.092 Sum_probs=104.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYP-TIVSYTAYMKILFLNDR 151 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~ 151 (519)
...|++++|.++++.+... ......++..+...+...|++++|...+++.... +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755444432 2235567777777888888888888888776552 2122 24567777778888888
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 010057 152 VKEATDVYKEMIQR----GLPP--NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAG 220 (519)
Q Consensus 152 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g 220 (519)
+++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.... +... -..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888876652 1111 1345677788888889999998888887542 2111 1234577788888999
Q ss_pred ChHHHHHHHHHHHH
Q 010057 221 ETRTIILILRYMKE 234 (519)
Q Consensus 221 ~~~~a~~~~~~~~~ 234 (519)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887665
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=1.7e-06 Score=76.39 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhc-CChhHHHHHHHHhccc
Q 010057 441 AGSADKALKIYKTMCRKGIHPSLGTF-NVLLAGLEKL-GRVSDAEIYRKEKKSI 492 (519)
Q Consensus 441 ~g~~~~A~~~~~~m~~~g~~p~~~t~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 492 (519)
.|++++|++.+++..+. .|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56777777777776655 4443322 2233333333 5577788888776654
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=8e-06 Score=70.48 Aligned_cols=188 Identities=9% Similarity=-0.011 Sum_probs=125.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHh------------CCCC------
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTM-------LDIFGEAKRISSMKYVFELMQE------------KGIN------ 98 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~~------ 98 (519)
++...|.+.|..+.+.. +-....|..+ ...+.+.++..++...+..-.+ .|.-
T Consensus 20 ~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 67788888888776543 4455667666 4555555555555554444333 1210
Q ss_pred --CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HH
Q 010057 99 --IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPN----CY 172 (519)
Q Consensus 99 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~ 172 (519)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... |+ ..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~ 172 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGA 172 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHH
Confidence 012344556677788889999999888877653 44335555666788889999999888755442 22 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPD--KAACNILIEKCCKAGETRTIILILRYMKENRLA 238 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (519)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 677788888889999999999988875433243 335566677788889999999999988886543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.7e-05 Score=60.32 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555555555666666666666555432 1244555555556666666666666666655542 22355555666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 182 VRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
...|++++|...|+...+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666655532 1244455555555555544
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.39 E-value=1.5e-05 Score=60.46 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
+......|.+.|++++|.+.|+...+.... +...|..+..++.+.|++++|+..|++..+... .+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 444444445555555555555554443221 344444444455555555555555544444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQ 164 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~ 164 (519)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555444444444
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.00038 Score=62.20 Aligned_cols=86 Identities=6% Similarity=0.061 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG-KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA-G-ETRTI 225 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~a 225 (519)
.+..++|++++++++..+. -+..+|+.--..+...+ .+++++++++.+..... -+..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444556666666665421 13344555444444555 36666666666665422 2444555544444444 4 55666
Q ss_pred HHHHHHHHHcC
Q 010057 226 ILILRYMKENR 236 (519)
Q Consensus 226 ~~~~~~~~~~~ 236 (519)
+++++.+.+..
T Consensus 145 L~~~~k~L~~d 155 (349)
T 3q7a_A 145 IEYIHGSLLPD 155 (349)
T ss_dssp HHHHHHHTSSC
T ss_pred HHHHHHHHHhC
Confidence 66666555433
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-05 Score=60.69 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445555555555555555555555554432 1134455555555555555555555555555432 2234455555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010057 181 LVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~ 199 (519)
+...|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=3.6e-06 Score=72.64 Aligned_cols=189 Identities=10% Similarity=-0.068 Sum_probs=136.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHH-------HHHHhccCChhhHHHHHHHHHhCCCCcCH--------------
Q 010057 302 KKKNLVAIDSLLSGIMDKSIQLDSAVISTI-------IEVNCDHRRRDGALLAFEYSVKMDLNLER-------------- 360 (519)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 360 (519)
..++...|...|.+....... ....|..+ ...+...++..+++..+..... +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578999999999998876543 33445544 3344444445555555554433 22221
Q ss_pred --------HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC---ch
Q 010057 361 --------TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC---TA 429 (519)
Q Consensus 361 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 429 (519)
.........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.....+++ ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 223456677889999999999999988755 44335566666789999999999999977654321 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++.+..|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 678889999999999999999999985533254 335666777889999999999999999988876
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.38 E-value=5.5e-06 Score=69.03 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=112.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChh
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE----KGINI-DAVTYTSVMHWLSNAGDVD 118 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~ 118 (519)
|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 6 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 6 HDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp -CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 7888888866655321 123567788888999999999999999988766 22121 3457788888999999999
Q ss_pred hHHHHHHHHHHC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHHcCCH
Q 010057 119 GAVNIWEEMKLK----ECYP--TIVSYTAYMKILFLNDRVKEATDVYKEMIQRG-LPPN----CYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 119 ~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~~ 187 (519)
+|...+++.... +-.| ...++..+...+...|++++|...+++..... -..+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999887553 2111 23467788889999999999999999876421 0112 23467788889999999
Q ss_pred HHHHHHHHHHHH
Q 010057 188 EEALEIFSKMQE 199 (519)
Q Consensus 188 ~~a~~~~~~m~~ 199 (519)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=9.7e-07 Score=69.39 Aligned_cols=101 Identities=14% Similarity=-0.048 Sum_probs=80.9
Q ss_pred cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 010057 394 GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG 472 (519)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~ 472 (519)
+...+..+...+...|++++|...|+.+... +.+...|..+..+|...|++++|++.|++..+.. +.++..+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4455666777888889999999999877665 3467788888888999999999999999888773 3456777788888
Q ss_pred HHhcCChhHHHHHHHHhcccCcc
Q 010057 473 LEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 473 ~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
|...|++++|...+++..++.|+
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCcC
Confidence 89999999999999988887764
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=1.4e-05 Score=61.20 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
+.+...|..+...+...|++++|...|+...+.... +...+..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 445677888889999999999999999998876432 67888888999999999999999999988763 2357788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
..++.+.|++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 899999999999999999988752 123455666666655544
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=1.6e-05 Score=60.47 Aligned_cols=120 Identities=16% Similarity=0.042 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 456677888888899999999999999887643 367788888899999999999999999988763 235778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKY 187 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 187 (519)
.+...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999988763 23667777777777776654
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=0.00041 Score=62.04 Aligned_cols=176 Identities=9% Similarity=-0.005 Sum_probs=114.5
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-C
Q 010057 40 LKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAK-RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA-G-D 116 (519)
Q Consensus 40 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~ 116 (519)
+......++|+++++.+.... +-+..+|+.--..+...+ +++++.+.++.+.+...+ +..+|+.--..+... + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 344456677888888776443 445566777777777777 488888888888877655 677777766666665 6 7
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--
Q 010057 117 VDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVK--------EATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGK-- 186 (519)
Q Consensus 117 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-- 186 (519)
.++++++++.+.+...+ |..+|+.-...+.+.+.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888888888766433 5666665555544444444 777777777776433 66777776666666654
Q ss_pred -----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 187 -----YEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 187 -----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777766643 2255666655555554444
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=2.1e-06 Score=63.54 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=75.7
Q ss_pred chhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CcccHHHHHH
Q 010057 395 VYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP--SLGTFNVLLA 471 (519)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~ 471 (519)
...+..+...+...|++++|...|++..+. +.+...|..+..+|...|++++|++.|++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455566666677777777777665443 2346678888888999999999999999988773 33 4677888888
Q ss_pred HHHhc-CChhHHHHHHHHhcccCccc
Q 010057 472 GLEKL-GRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 472 ~~~~~-g~~~~a~~~~~~~~~~~~~~ 496 (519)
++... |++++|.+.+++..+..|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88999 99999999999988776653
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=8.6e-07 Score=69.22 Aligned_cols=94 Identities=11% Similarity=-0.126 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhc
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSA 441 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 441 (519)
+..+...+.+.|++++|...|+...+.. +.+...+..+..+|...|++++|...|++..... .++..|..+..+|...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4445555666666666666666665543 2333444444444444455555544444443322 2234444444444444
Q ss_pred CCHHHHHHHHHHHHHC
Q 010057 442 GSADKALKIYKTMCRK 457 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~ 457 (519)
|++++|++.|++..+.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4555554444444433
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00016 Score=64.25 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=161.5
Q ss_pred hhhhHHhhhccCChh-HHHHHHHhC-CCCCCHHH-HH---HHHhcCCC----------hHHHHHHHHHHhhcCCCCCCHH
Q 010057 4 TISNVYKILKYSTWD-SAQDLLKNL-PIKWDSYT-VN---QVLKTHPP----------MEKAWLFFNWVSRSRGFNHDRF 67 (519)
Q Consensus 4 ~~~~i~~~~~~~~~~-~a~~~~~~~-~~~p~~~~-~~---~ll~~~~~----------~~~A~~~~~~~~~~~~~~~~~~ 67 (519)
+...+....+.|.++ +|+++++.+ ...|+.++ |+ .+|...+. +++++.+++.+.... +.+..
T Consensus 32 ~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~ 109 (331)
T 3dss_A 32 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYG 109 (331)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHH
Confidence 445566666777777 689999988 77777665 33 22333232 678899999887554 67888
Q ss_pred HHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 68 TYTTMLDIFGEAK--RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD-VDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 68 ~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+|+.-...+.+.+ +++++..+++.+.+.... |...|+.-.-.+...|. ++++++.++.+.+..+. |..+|+....
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ 187 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 9998888888888 489999999999987655 88889888888888888 58999999999887544 7778887666
Q ss_pred HHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Q 010057 145 ILFLN--------------DRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA-----------GKYEEALEIFSKMQE 199 (519)
Q Consensus 145 ~~~~~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~ 199 (519)
.+.+. +.++++++.+.+..... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 66554 45788999999888763 33777777555555444 457889999999987
Q ss_pred cCCCCCHH-HHHHHHH---HHHhcCChHHHHHHHHHHHHcCC
Q 010057 200 AGVQPDKA-ACNILIE---KCCKAGETRTIILILRYMKENRL 237 (519)
Q Consensus 200 ~g~~p~~~-~~~~li~---~~~~~g~~~~a~~~~~~~~~~~~ 237 (519)
. .||.. .+.+++. +....+..+++...+.++.+-++
T Consensus 267 ~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 267 L--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred h--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4 45542 2222221 11234666777777877776543
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=7.8e-06 Score=72.16 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...++...+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455566666666666666666666666542 2255566666666666666666666666665532 124445666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010057 215 KCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~ 234 (519)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655433
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=3.6e-06 Score=64.06 Aligned_cols=34 Identities=3% Similarity=-0.005 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGT 465 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 465 (519)
+|..+..+|...|++++|++.|++..+. .||+.+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 4555566666666666666666666554 445443
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=3.7e-06 Score=65.00 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHH
Q 010057 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVY 438 (519)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 438 (519)
+...+..+...+...|++++|...|....+.. +.+ ...|..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~---------------------------------~~~~~~l~~~~ 53 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLV---------------------------------AVYYTNRALCY 53 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC---------------------------------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCc---------------------------------HHHHHHHHHHH
Confidence 34455566666666666666666666665543 122 34455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 439 FSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..++.|+
T Consensus 54 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 54 LKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555542 223445555555555555555555555555555444
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.26 E-value=2e-06 Score=64.86 Aligned_cols=96 Identities=8% Similarity=-0.096 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGR 478 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~ 478 (519)
.+...+.+.|++++|...|++..+.. .+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34445556666666666666655543 356778888888888999999999999888773 3346677778888888999
Q ss_pred hhHHHHHHHHhcccCccc
Q 010057 479 VSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 479 ~~~a~~~~~~~~~~~~~~ 496 (519)
+++|...+++..++.|+.
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 999999999888887753
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=3.6e-05 Score=69.87 Aligned_cols=132 Identities=13% Similarity=-0.002 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT--------------IVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 166 (519)
...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|...|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666667777777777777777777766522211 4788888889999999999999999988863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010057 167 LPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTI-ILILRYMKE 234 (519)
Q Consensus 167 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 234 (519)
+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++ ..+++.|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367788889999999999999999999988753 23566888888888888988888 445665543
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.25 E-value=3e-05 Score=70.40 Aligned_cols=150 Identities=9% Similarity=-0.019 Sum_probs=118.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHH
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID--------------AVTYTSVMHW 110 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~ 110 (519)
++++|++.|+...... +.+...|..+...|.+.|++++|...|+...+...... ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332111 22456788899999999999999999999988643321 5889999999
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010057 111 LSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190 (519)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 190 (519)
+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 2367889999999999999999999999999863 33677888999999999999888
Q ss_pred -HHHHHHHH
Q 010057 191 -LEIFSKMQ 198 (519)
Q Consensus 191 -~~~~~~m~ 198 (519)
..+|..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=7.9e-06 Score=63.99 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
...|..+..+|...|++++|++.+++..+.. +.+...+..+..++...|++++|...+++..++.|
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3455666666666677777777766666552 22345555666666666777777777766665544
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=3.1e-06 Score=70.42 Aligned_cols=98 Identities=17% Similarity=-0.008 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKC 216 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 216 (519)
..|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|+...+.. +-+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 456666666677777777777777666642 2355666667777777777777777777766542 12445666666666
Q ss_pred HhcCChHHHH-HHHHHHHHcC
Q 010057 217 CKAGETRTII-LILRYMKENR 236 (519)
Q Consensus 217 ~~~g~~~~a~-~~~~~~~~~~ 236 (519)
...++.+++. ..+..+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 6666655555 4444444433
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=4.4e-06 Score=69.46 Aligned_cols=154 Identities=8% Similarity=-0.013 Sum_probs=86.8
Q ss_pred hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHHHH
Q 010057 41 KTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID---------------AVTYT 105 (519)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~ 105 (519)
...|+++.+.+.|+.-.... ......+..+...+...|++++|...|+...+....-. ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33456666666554322111 22344566666777777788888877777776422111 25667
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
.+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 77777777777777777777776652 2256677777777777777877777777776642 224556666666666666
Q ss_pred CHHHHH-HHHHHHH
Q 010057 186 KYEEAL-EIFSKMQ 198 (519)
Q Consensus 186 ~~~~a~-~~~~~m~ 198 (519)
+.+++. ..|..+.
T Consensus 171 ~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 171 EARKKDKLTFGGMF 184 (198)
T ss_dssp HHHC----------
T ss_pred HHHHHHHHHHHHHh
Confidence 555554 4444443
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.8e-05 Score=56.40 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLV 182 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 182 (519)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...|++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444445555555555555544432 1134444455555555555555555555544432 113444445555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQE 199 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~ 199 (519)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5.5e-05 Score=57.27 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKI 145 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 145 (519)
...|..+...+.+.|++++|...|+...+.... +...|..+..++.+.|++++|+..|++..+... .+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 455777778888999999999999988876433 678888899999999999999999999887642 257788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 010057 146 LFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~ 165 (519)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988774
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=9.4e-06 Score=63.20 Aligned_cols=99 Identities=18% Similarity=-0.045 Sum_probs=67.9
Q ss_pred hhHHHHHHHHhcCCCcchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 010057 396 YLGALLIHRLGSARRPVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLE 474 (519)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~ 474 (519)
..+..+...+.+.|++++|...|+.+.... .+...|..+..+|.+.|++++|+..|++..+.. +.++..+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344445566677777777777777665543 356667777777777777777777777777663 334556666777777
Q ss_pred hcCChhHHHHHHHHhcccCcc
Q 010057 475 KLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..|++++|...+++..++.|+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777776653
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=5.6e-05 Score=57.35 Aligned_cols=59 Identities=8% Similarity=0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
+..+...+.+.|++++|...|+...+.... +...|+.+..+|...|++++|++.|++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555555555555555543222 34445555555555555555555555544
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=0.00014 Score=53.95 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344444445555555555555555544432 1134444444555555555555555555544431 12344445555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 010057 182 VRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~ 199 (519)
...|++++|.+.++...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555444
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=0.00011 Score=54.53 Aligned_cols=99 Identities=13% Similarity=-0.000 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
+...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345677778888889999999999998887643 267788888888889999999999999887763 225677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 010057 145 ILFLNDRVKEATDVYKEMIQR 165 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~ 165 (519)
++...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 899999999999999988875
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.15 E-value=2.9e-06 Score=81.02 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=78.3
Q ss_pred HhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchH
Q 010057 335 NCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPA 414 (519)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (519)
+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|.+.++...+..
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------------ 70 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------------ 70 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------
Confidence 445556666666665555442 2234445555555555555555555555554432
Q ss_pred HHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH--HHhcCChhHHHHHHH-----
Q 010057 415 AKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAG--LEKLGRVSDAEIYRK----- 487 (519)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~--~~~~g~~~~a~~~~~----- 487 (519)
+.+...|..+..+|.+.|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 71 ----------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 71 ----------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 2235678888888999999999999999888763 2234555555555 777899999999998
Q ss_pred ------HhcccCcccccc
Q 010057 488 ------EKKSIQADALSK 499 (519)
Q Consensus 488 ------~~~~~~~~~~~~ 499 (519)
+..++.|+...|
T Consensus 140 ~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp TTCCTTSSCCCCTTCCSC
T ss_pred Hhhhhhhhcccccccccc
Confidence 667777765555
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00019 Score=67.73 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhC--CC--CcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhc----CCCcc
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKM--DL--NLE-RTAYLALIGILIKLNTFPKVAEIVEEMTKA----GHSLG 394 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 394 (519)
...++..+...|...|++++|..++..+... +. .+. ...+..++..|...|++++|..+++..... +.++.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 3567788888999999999999999887653 21 221 345888889999999999999999887642 21111
Q ss_pred --chhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 395 --VYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 395 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
...+..+...+...+++++|...|...
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 234556666777888888888877654
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=0.0001 Score=58.79 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
...+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44555566666666666666666666655421 145566666666666666666666666666542 2245566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 010057 181 LVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~ 200 (519)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666543
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=0.0001 Score=58.82 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=92.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
+...|..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|+..|+...+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888899999999999999999999863 3378899999999999999999999999998864 235779999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHH
Q 010057 215 KCCKAGETRTIILILRYMKENRLALRYPVFKEAL 248 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 248 (519)
+|...|++++|...|+...+.........+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999988765544333333333
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=7.9e-06 Score=62.29 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHhcccCc
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKGIHPS----LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQA 494 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 494 (519)
.+..+..+|.+.|++++|+..|++..+.. |+ ...+..+..++...|++++|...++++.+..|
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 44445555555555555555555555442 22 23344444555555555555555555554443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=4.4e-05 Score=58.03 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC--CCC----hhhHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC--YPT----IVSYTAY 142 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 142 (519)
|..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++...... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44444444445555555555554444321 1334444444444444555555544444433210 001 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~ 164 (519)
..++...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=3.8e-05 Score=58.35 Aligned_cols=111 Identities=13% Similarity=0.185 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 010057 101 AVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGL--PPN----CYTY 174 (519)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~ 174 (519)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666677777777777777777776653 22556666777777777777777777777665321 112 5566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 175 TVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 175 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
..+...+...|++++|.+.|+...+. .|+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 66677777777777777777776664 345444444433
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=7.1e-05 Score=54.94 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP--DKAACNILI 213 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li 213 (519)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4455566666666677777777776666542 2345566666666677777777777777666542 12 355666666
Q ss_pred HHHHhc-CChHHHHHHHHHHHHcC
Q 010057 214 EKCCKA-GETRTIILILRYMKENR 236 (519)
Q Consensus 214 ~~~~~~-g~~~~a~~~~~~~~~~~ 236 (519)
.++.+. |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 677777 77777777776665544
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=2.6e-06 Score=63.85 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=44.8
Q ss_pred CCcchHHHHhhhCCcC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 010057 409 RRPVPAAKIFSLLPED----QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 409 g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
|++++|+..|++..+. +.+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455554444333 1124455566666666666666666666666552 2234455555556666666666666
Q ss_pred HHHHhcccCc
Q 010057 485 YRKEKKSIQA 494 (519)
Q Consensus 485 ~~~~~~~~~~ 494 (519)
.+++..+..|
T Consensus 83 ~~~~al~~~p 92 (117)
T 3k9i_A 83 LLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhCC
Confidence 6666555544
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=0.0001 Score=56.64 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
+...|..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555555555555555555554442 1134455555555555666666666655555532 224455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 010057 180 YLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~ 199 (519)
++...|++++|...|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666655543
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.00017 Score=68.11 Aligned_cols=167 Identities=7% Similarity=0.013 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCC-hh
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKG-INIDAV----TYTSVMHWLSNAGDVDGAVNIWEEMKLK----ECYPT-IV 137 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 137 (519)
.+..+...|...|++++|.+.+..+.+.- ..++.. +.+.+-..+...|+.+.|..+++..... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778899999999999999998876521 111221 2333333444568899999998887542 22222 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-C-C--H
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQR--GL--PP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GVQ-P-D--K 206 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~--~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~-p-~--~ 206 (519)
++..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..+++..... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788999999999999999999987652 11 12 2457888999999999999999999887642 121 2 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 207 AACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 207 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..+..+...+...++++.|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566677778888999999988877654
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.001 Score=59.17 Aligned_cols=152 Identities=7% Similarity=-0.091 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-cchHHHHHHHHHhcCCCccchhHHHHHHHHhcC-----------
Q 010057 341 RDGALLAFEYSVKMDLNLERTAYLALIGILIKLNT-FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSA----------- 408 (519)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 408 (519)
+++++..+..+.+.. +-|...|+.-..++...|. ++++++.+..+++.. +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 556666666666544 2344555555555555565 356666666666554 33444444444333322
Q ss_pred ---CCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-
Q 010057 409 ---RRPVPAAKIFSLLPED-QKCTATYTALIGVYFSA-----------GSADKALKIYKTMCRKGIHPSLGTFNVLLAG- 472 (519)
Q Consensus 409 ---g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~- 472 (519)
+.++++.+.+...... +.|..+|+-+-..+.+. +.++++++.++++.+. .||. .|..+..+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHH
Confidence 2355666666655443 44566776655555554 4578999999999987 5665 34432222
Q ss_pred ----HHhcCChhHHHHHHHHhcccCcccc
Q 010057 473 ----LEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 473 ----~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
....|..+++..+++++++++|...
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 2346778899999999999988644
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=0.00031 Score=54.62 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPT----IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVL 177 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 177 (519)
..+..+...+...|++++|...|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444444444444444444333 222 2334444444444444444444444444331 1133444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010057 178 MEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 178 i~~~~~~~~~~~a~~~~~~m~~ 199 (519)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444555555554444443
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.03 E-value=5.8e-06 Score=65.84 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHH
Q 010057 325 SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLN-LE----RTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGA 399 (519)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (519)
..++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+....+..-..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 344556666666667777777777665543111 11 12355555556666666666666655543210000
Q ss_pred HHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHH
Q 010057 400 LLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK----GIHP-SLGTFNVLLAGLE 474 (519)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~l~~~~~ 474 (519)
........+..+...|...|++++|.+.+++..+. +..+ ...++..+...+.
T Consensus 84 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 84 -----------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00001345677788888888888888888877643 2111 1345667777888
Q ss_pred hcCChhHHHHHHHHhccc
Q 010057 475 KLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 475 ~~g~~~~a~~~~~~~~~~ 492 (519)
..|++++|.+.+++..++
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 889999999888877654
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=6.8e-05 Score=59.46 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECY-PT----IVSYTAYMKILFLNDRVKEATDVYKEMIQRGL-PPN----CY 172 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ 172 (519)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 13555566666666777777666666544200 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEA----GVQP-DKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666777777777777777666432 1111 123566677777788888888887776554
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=9.5e-06 Score=63.04 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhc
Q 010057 362 AYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSA 441 (519)
Q Consensus 362 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 441 (519)
.+......+.+.|++++|...|+..++.. |+...- ++ ....+.+...|..+..++.+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------------~a------~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------------EA------FDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------------SC------CCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------------hh------hhhccchHHHHHHHHHHHHHC
Confidence 35566677778888888888888887643 221000 00 000001234899999999999
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCC-cccH----HHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 442 GSADKALKIYKTMCRK-----GIHPS-LGTF----NVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~-----g~~p~-~~t~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++++|+..+++.++. .+.|+ ...| .....++...|++++|...|++..++.|+.
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999998875 22454 5677 788889999999999999999999998863
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=7.4e-05 Score=56.72 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=56.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCccc---hhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC----chhHHHHHHHHH
Q 010057 367 IGILIKLNTFPKVAEIVEEMTKAGHSLGV---YLGALLIHRLGSARRPVPAAKIFSLLPEDQKC----TATYTALIGVYF 439 (519)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~ 439 (519)
...+...|++++|...+..+.+.. +.+. ..+..+..++...|++++|...|+.+....|+ ...+..+..+|.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334445555555555555555432 1112 24444555555556666666555554443232 455777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcc
Q 010057 440 SAGSADKALKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (519)
+.|++++|++.|++..+. .|+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HcCCHHHHHHHHHHHHHH--CCCCh
Confidence 899999999999988877 35543
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.93 E-value=9.9e-05 Score=55.37 Aligned_cols=88 Identities=11% Similarity=-0.026 Sum_probs=37.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYE 188 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 188 (519)
..+.+.|++++|...|++..+... .+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334444444444444444443311 133344444444444444444444444444431 113334444444444444444
Q ss_pred HHHHHHHHHH
Q 010057 189 EALEIFSKMQ 198 (519)
Q Consensus 189 ~a~~~~~~m~ 198 (519)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=2e-05 Score=62.91 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHh
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFS 440 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 440 (519)
..+......+.+.|++++|...|...++.- +. ............ ..+ .+.+...|..+..+|.+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~----------~~~~~~~~~~~~--~~~--~~~~~~~~~nla~~~~~ 75 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL--DT----------LILREKPGEPEW--VEL--DRKNIPLYANMSQCYLN 75 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHTSCTTSHHH--HHH--HHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH----------hcccCCCCHHHH--HHH--HHHHHHHHHHHHHHHHh
Confidence 457777788888889999988888877540 00 000000000000 000 01124566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 441 AGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 441 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.|++++|+..+++.++.. +.+...|..+..+|...|++++|...+++..++.|+
T Consensus 76 ~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 777777777777777663 334566666777777777777777777777776664
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=6.5e-05 Score=56.02 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=46.4
Q ss_pred cCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010057 114 AGDVDGAVNIWEEMKLKE--CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEAL 191 (519)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 191 (519)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355666666666655542 11134455566666666666666666666666542 224555666666666666666666
Q ss_pred HHHHHHHH
Q 010057 192 EIFSKMQE 199 (519)
Q Consensus 192 ~~~~~m~~ 199 (519)
..++....
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.80 E-value=3.1e-05 Score=70.29 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=49.6
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHH-
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-LGTFNVLLAGL- 473 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l~~~~- 473 (519)
.+..+..+|.+.|++++|...+++..+..| +...|..+..+|...|++++|++.|++..+. .|+ ...+..+....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 667778888888889998888887766533 5678888999999999999999999988765 444 44444444442
Q ss_pred HhcCChhHHHHHHHHhcccCccc
Q 010057 474 EKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 474 ~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
...+..+++...|+++.+..|+.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCC
Confidence 44566778888888888777654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.78 E-value=9.5e-05 Score=67.89 Aligned_cols=121 Identities=11% Similarity=-0.095 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc---------------CCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-
Q 010057 363 YLALIGILIKLNTFPKVAEIVEEMTKA---------------GHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK- 426 (519)
Q Consensus 363 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 426 (519)
+..+...+.+.|++++|.+.|+..++. --+.+...+..+..+|.+.|++++|.+.++++.+..|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 445555566666666666666666541 0122445666677777777777777777776665533
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 010057 427 CTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI 484 (519)
Q Consensus 427 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~ 484 (519)
+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888887762 2245555566666666666665543
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=0.0001 Score=69.95 Aligned_cols=128 Identities=5% Similarity=-0.181 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc--------------chhHHHHHHHHhcCCCcchHHHHhhhCCcCC-
Q 010057 361 TAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG--------------VYLGALLIHRLGSARRPVPAAKIFSLLPEDQ- 425 (519)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 425 (519)
..|..+...+.+.|++++|...|...++..-... ...+..+..+|.+.|++++|...++++.+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3466667777777788888877777776431111 4667777778888888888888887766543
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHH-HHHHh
Q 010057 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEI-YRKEK 489 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~-~~~~~ 489 (519)
.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++.+.++.+++.+ .+++|
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888763 3345667777777788887777653 34433
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=0.00014 Score=65.91 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCH------------------HHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 327 VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLER------------------TAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
.+......+.+.|++++|+..|+...+.. |+. ..|..+..++.+.|++++|...+...++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35556667788888888888888877643 332 2788889999999999999999999998
Q ss_pred cCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCC-CchhHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 010057 389 AGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQK-CTATYTALIGV-YFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 457 (519)
.. +.+...+..+..+|...|++++|...|+++.+..| +...+..+... ....+..+++.++|.+|...
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 65 45677889999999999999999999999987654 45566666655 33456778888999998865
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.73 E-value=0.00016 Score=69.02 Aligned_cols=113 Identities=10% Similarity=-0.049 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNI 123 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 123 (519)
|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++|.+.
T Consensus 20 g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 20 KDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666554332 334555666666666666666666666666554322 445555555666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010057 124 WEEMKLKECYPTIVSYTAYMKI--LFLNDRVKEATDVYK 160 (519)
Q Consensus 124 ~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~ 160 (519)
|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 97 ~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6655544211 22333333333 455555555555555
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=7.3e-05 Score=55.48 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=48.9
Q ss_pred hHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 413 PAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 413 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
+|.+.|++..+. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444333 2345566666666667777777777776666653 22345566666666667777777777766666
Q ss_pred cCcc
Q 010057 492 IQAD 495 (519)
Q Consensus 492 ~~~~ 495 (519)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5553
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.68 E-value=0.00062 Score=64.63 Aligned_cols=94 Identities=18% Similarity=0.083 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIE 214 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 214 (519)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+. .| +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3566667777777777777777777777653 235666777777777777777777777777663 33 3346666667
Q ss_pred HHHhcCChHHHHH-HHHHH
Q 010057 215 KCCKAGETRTIIL-ILRYM 232 (519)
Q Consensus 215 ~~~~~g~~~~a~~-~~~~~ 232 (519)
++.+.++.+++.+ ++..|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777666553 34443
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.67 E-value=0.00082 Score=53.33 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
..|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+.....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455566666666666666666666666542 224556666666666666666666666666553
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00074 Score=61.94 Aligned_cols=138 Identities=13% Similarity=-0.001 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILF 147 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 147 (519)
.+..+...+.+.|++++|.+.|+...+.- ++. . .... .++.... -+.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~--~--------~~~~-------~~~~~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS--R--------AAAE-------DADGAKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--H--------HHSC-------HHHHGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC--c--------cccC-------hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35666667777777777777777666520 000 0 0000 0000001 0113455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIIL 227 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 227 (519)
+.|++++|.+.+++.++.. +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666642 2245566666667777777777777777666542 1244555566666666666655543
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=7.3e-05 Score=70.91 Aligned_cols=123 Identities=10% Similarity=0.004 Sum_probs=78.9
Q ss_pred HHhcCCcchHHHHHHHHHhcC---C----CccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-----C---CC-chhHHH
Q 010057 370 LIKLNTFPKVAEIVEEMTKAG---H----SLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-----Q---KC-TATYTA 433 (519)
Q Consensus 370 ~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~-~~~~~~ 433 (519)
+...|++++|+.++++.++.. + +....+++.|...|...|++++|+.++++.... + |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666655311 1 112345566666666667766666666543221 2 22 457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHhccc
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRK-----GI-HPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSI 492 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~ 492 (519)
|...|...|++++|..++++..+- |- .|+ ..+...+-.++...+.+++|+..++++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887642 31 122 334455666778889999999999888653
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00066 Score=64.42 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=66.8
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHH
Q 010057 146 LFLNDRVKEATDVYKEMIQR---GLPP----NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDK-AACNI 211 (519)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~ 211 (519)
+...|++++|+.++++.++. -+.| ...+++.|...|...|++++|..++++..+. | -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887652 1222 2457888999999999999999999887542 2 23333 37888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 010057 212 LIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 212 li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
|...|...|++++|+.++++..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999998887654
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.0033 Score=48.14 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEALEIFSKMQE 199 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 199 (519)
.+++++|.+.|++..+.| +...+..|...|.. .++.++|.++|+...+
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 344444444444444332 33333334444433 3444444444444433
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00021 Score=52.33 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc------chh
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG------VYL 397 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 397 (519)
+...+..+...+...|++++|++.|+...+.. +.+...+..+..++.+.|++++|.+.++...+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 34556677778888899999999999888764 3456778888888999999999999999988764 222 445
Q ss_pred HHHHHHHHhcCCCcchHHHHhhhCCc
Q 010057 398 GALLIHRLGSARRPVPAAKIFSLLPE 423 (519)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 423 (519)
+..+..++...|+.+.|.+.++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 55666667777777777777766654
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.0034 Score=48.11 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 010057 115 GDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVR----AGKYEEA 190 (519)
Q Consensus 115 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a 190 (519)
++.++|.+.|++..+.| +.... |-..|...+..++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988887 33333 6677777788889999999998874 77888889889988 8899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCc
Q 010057 191 LEIFSKMQEAGVQPDKAACNILIEKCCK----AGETRTIILILRYMKENRLA 238 (519)
Q Consensus 191 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 238 (519)
.++|+...+.| +...+..|...|.. .+++++|...|+...+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999875 66788889999988 89999999999998887753
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00017 Score=51.91 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 426 KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
.++..|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.+++..++.+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 346677778888888888888888888887763 334566777777888888888888888877766553
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=4.1e-05 Score=56.33 Aligned_cols=89 Identities=11% Similarity=-0.017 Sum_probs=57.3
Q ss_pred hHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------cccHHH
Q 010057 397 LGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPS-------LGTFNV 468 (519)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ 468 (519)
.+..+...+...|++++|.+.|++..+. +.+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHH
Confidence 4444555566666666666666655443 234667888888888889999999988888876 444 334455
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 010057 469 LLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 469 l~~~~~~~g~~~~a~~~~~ 487 (519)
+..++...|+.+.|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 5555666666666555443
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=0.001 Score=64.68 Aligned_cols=154 Identities=8% Similarity=-0.034 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----------cchHHHHHHHHHhcCCCccchhHHHHHHHHhcCC
Q 010057 340 RRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNT----------FPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSAR 409 (519)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (519)
..++|++.++.+.+.+ +-+...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4568899999988765 2344557666666666666 889999999999865 456778888888888888
Q ss_pred --CcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---------
Q 010057 410 --RPVPAAKIFSLLPED-QKCTATYTALIGVYFSAG-SADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKL--------- 476 (519)
Q Consensus 410 --~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~--------- 476 (519)
+++++.+.++++.+. +.|..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 569999999988775 457889999888888888 8999999999998874 34677777777776653
Q ss_pred -----CChhHHHHHHHHhcccCccc
Q 010057 477 -----GRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 477 -----g~~~~a~~~~~~~~~~~~~~ 496 (519)
+.++++.++++++.++.|+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCC
Confidence 55789999999998887754
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0086 Score=58.22 Aligned_cols=172 Identities=9% Similarity=-0.025 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKR----------ISSMKYVFELMQEKGINIDAVTYTSVMHWLSN 113 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 113 (519)
...++|++.++.+.... +-+...|+.--..+...++ ++++.+.++.+.+...+ +..+|+.-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34567788888776443 3455567766666666665 78888888888876555 67778777777777
Q ss_pred cC--ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc------
Q 010057 114 AG--DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND-RVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA------ 184 (519)
Q Consensus 114 ~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 184 (519)
.+ +++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 77 568888888888776533 6777777777777777 778888888888776433 667777666665553
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010057 185 --------GKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGE 221 (519)
Q Consensus 185 --------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 221 (519)
+.++++++.++...... +-|...|.-+-..+.+.+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34577777777766542 2255566665555555554
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.40 E-value=0.0032 Score=48.83 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQR-----GLPPN-CYTY----TVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
.|+.+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555555555555555555554442 11333 2344 555556666666666666666554
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.00029 Score=65.78 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-cccHHHHHHHHHhcCChhHHHHHHHHhcccCccccccc
Q 010057 428 TATYTALIGVYFSAGSADKALKIYKTMCRK-----G-IHPS-LGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKD 500 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 500 (519)
..+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.+...|...|++++|+.+++++.++......|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 357888999999999999999999987643 2 1122 45788888899999999999999999998888888887
Q ss_pred ccchHHHHh
Q 010057 501 AVPMEEKIC 509 (519)
Q Consensus 501 ~~~~~~~i~ 509 (519)
.+.......
T Consensus 409 Hp~~~~~~~ 417 (429)
T 3qwp_A 409 HSLIEDLIL 417 (429)
T ss_dssp SHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 776665543
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.30 E-value=0.0002 Score=66.69 Aligned_cols=101 Identities=18% Similarity=0.078 Sum_probs=75.1
Q ss_pred CCCcchHHHHhhhCCcC-----CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-cccHHHHHH
Q 010057 408 ARRPVPAAKIFSLLPED-----QKC----TATYTALIGVYFSAGSADKALKIYKTMCRK-----G-IHPS-LGTFNVLLA 471 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~l~~ 471 (519)
.|++++|+.++++..+. +|+ ..+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666543211 222 357899999999999999999999988653 3 1222 457888999
Q ss_pred HHHhcCChhHHHHHHHHhcccCcccccccccchHHHH
Q 010057 472 GLEKLGRVSDAEIYRKEKKSIQADALSKDAVPMEEKI 508 (519)
Q Consensus 472 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i 508 (519)
.|...|++++|+.+++++.++......|+.+....+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 9999999999999999999988888888776655543
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.15 E-value=0.0055 Score=45.03 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010057 65 DRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 65 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 128 (519)
+...+..+...|...|++++|...|+...+.... +...|..+..++...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555555443221 34444445555555555555555555443
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.14 E-value=0.002 Score=45.21 Aligned_cols=77 Identities=9% Similarity=-0.046 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccccc
Q 010057 427 CTATYTALIGVYFSAGS---ADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDAVP 503 (519)
Q Consensus 427 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 503 (519)
|+..+..+..++...++ .++|..++++..+.. +-+...+..+...+.+.|++++|..+|+++.+..|. .|+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~~~ 81 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDRVT 81 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHH
Confidence 34445555555443332 455556665555552 222344444445555566666666666665555554 444433
Q ss_pred hHH
Q 010057 504 MEE 506 (519)
Q Consensus 504 ~~~ 506 (519)
...
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.14 E-value=0.00032 Score=54.33 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=59.6
Q ss_pred ccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHH
Q 010057 337 DHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAK 416 (519)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (519)
+.+.+++|++.++...+.. +-+...|..+..++...++++.+..... .+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 3345666666666666554 3345555555556665555442222111 1345555
Q ss_pred HhhhCCcCCC-CchhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 010057 417 IFSLLPEDQK-CTATYTALIGVYFSA-----------GSADKALKIYKTMCRKGIHPSLGTFNVLLA 471 (519)
Q Consensus 417 ~~~~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~ 471 (519)
.|++..+..| +...|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5555544333 355666677777665 4788888888888776 566555544433
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.0091 Score=41.34 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 137 VSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555555555555555432 22344555555555555555555555555554
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.12 E-value=0.0077 Score=41.71 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 181 (519)
..+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555555555566666666655555432 1134455555556666666666666666655532 12334444444433
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.0026 Score=56.85 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=87.4
Q ss_pred CcCHHHHHHHHHHHHhc--C---CcchHHHHHHHHHhcCCCccchhHHHHHHHHh----cCCC-------cchHHHHhhh
Q 010057 357 NLERTAYLALIGILIKL--N---TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLG----SARR-------PVPAAKIFSL 420 (519)
Q Consensus 357 ~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~-------~~~A~~~~~~ 420 (519)
+.+...|...+++.... + +..+|..+|++.++.. +-....+..+..+|. ..+. ...+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 44555666666554322 2 2456777777777654 122233333333321 1100 1112222222
Q ss_pred CCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 421 LPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 421 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
+...+.++..|..+...+...|++++|+..++++.+.+ |+...|..+...+.-.|++++|.+.+++...+.|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 33335567888888888888899999999999999985 78777777788889999999999999999888774
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.01 E-value=0.00041 Score=49.61 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHhcCCCcchHHHHhhhCCcCCC-Cch-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCCh
Q 010057 403 HRLGSARRPVPAAKIFSLLPEDQK-CTA-TYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLG-TFNVLLAGLEKLGRV 479 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~ 479 (519)
..+...|++++|.+.|+.+.+..| +.. .|..+..+|...|++++|++.|++..+. .|+.. .+.. +.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------HHH
Confidence 344555666666666665544333 356 7788888888899999999999988877 34433 2211 566
Q ss_pred hHHHHHHHHhcccCccccc
Q 010057 480 SDAEIYRKEKKSIQADALS 498 (519)
Q Consensus 480 ~~a~~~~~~~~~~~~~~~~ 498 (519)
.++...+++.....|+...
T Consensus 78 ~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHhccCccccc
Confidence 7778888777666665443
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.98 E-value=0.0051 Score=43.92 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 136 IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 136 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444555555555554444432 1123344444444555555555554444443
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.81 E-value=0.0079 Score=46.56 Aligned_cols=67 Identities=10% Similarity=-0.105 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 45 PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRIS----------SMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
.+++|++.++...+.. +.+...|..+..++...++++ +|...|++..+.... +...|..+-.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 4566666666665443 445666666666666655543 455555554444222 334444444444443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0035 Score=44.58 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHhcccCcccc
Q 010057 434 LIGVYFSAGSADKALKIYKTMCRKGIHPSLG-TFNVLLAGLEKLGRVSDAEIYRKEKKSIQADAL 497 (519)
Q Consensus 434 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 497 (519)
....+.+.|++++|++.|++..+.. +.+.. .+..+..+|...|++++|.+.+++..++.|+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 5667888999999999999999873 33456 788888999999999999999999999887643
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.57 E-value=0.064 Score=48.01 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=30.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 135 TIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444455555555555555432 4444444444444555555555555554444
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.067 Score=54.91 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=65.1
Q ss_pred HhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 77 GEAKRISSMKY-VFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 77 ~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
...+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34566666655 432111 12223566666666677776665542110 112233456777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 231 (519)
.++.+.+ .+...|..|...+.+.++++.|.+.|..+.+ |..+...|...|+.+...++-+.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 6664332 2556677777777777777777777766543 33444444445555554444433
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.38 E-value=0.014 Score=54.37 Aligned_cols=87 Identities=9% Similarity=-0.073 Sum_probs=69.3
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQR---GLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDK-AACNILI 213 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~li 213 (519)
..|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|+.++++..+. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 367899999999987752 12233 357899999999999999999999988642 2 23444 3889999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 010057 214 EKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 214 ~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.0048 Score=47.21 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 425 QKCTATYTALIGVYFSAG---SADKALKIYKTMCRKGIHP--SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
+++..+...+.+++++.+ +.++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.++++.+.+++|+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 355667777788888877 5558888888888764 24 24555566667888888888888888888888854
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.35 E-value=0.063 Score=39.49 Aligned_cols=116 Identities=12% Similarity=0.006 Sum_probs=68.7
Q ss_pred hhccCChhHHHHHHHhCCCCCCHHHHHHHHh-------------------------cCCChHHHHHHHHHHhhcCCCCCC
Q 010057 11 ILKYSTWDSAQDLLKNLPIKWDSYTVNQVLK-------------------------THPPMEKAWLFFNWVSRSRGFNHD 65 (519)
Q Consensus 11 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~ll~-------------------------~~~~~~~A~~~~~~~~~~~~~~~~ 65 (519)
++-.|..++-.++..+.--+-+...+|.+|. .||+..+....+-.+ ..+
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~------n~~ 90 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN------NTL 90 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT------TCC
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh------cch
Confidence 4556777787888877622234444555543 235555555555443 334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 66 RFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 66 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
.......+..+...|+-+...+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 45556666666666666666666666433 23456666666666677777766676666666666643
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.19 E-value=0.025 Score=39.47 Aligned_cols=78 Identities=6% Similarity=-0.066 Sum_probs=52.7
Q ss_pred ccchhHHHHHHHHhcCCC---cchHHHHhhhCCcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 010057 393 LGVYLGALLIHRLGSARR---PVPAAKIFSLLPEDQ-KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNV 468 (519)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 468 (519)
.++..+..+..++...++ .++|..++++..... .++.....+...+.+.|++++|+..|+++.+.. |+......
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~~~~ 81 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLDRVT 81 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCccHHH
Confidence 445555555555543333 577777777766543 457788888999999999999999999999874 44333344
Q ss_pred HHHH
Q 010057 469 LLAG 472 (519)
Q Consensus 469 l~~~ 472 (519)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.18 E-value=0.033 Score=51.92 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=67.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCH-HH
Q 010057 143 MKILFLNDRVKEATDVYKEMIQR---GLPPN----CYTYTVLMEYLVRAGKYEEALEIFSKMQEA-----G-VQPDK-AA 208 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~ 208 (519)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|+.++++.... | ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778899999998888753 12232 357888888899999999999988877532 2 23333 37
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 209 CNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 209 ~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999998887654
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.19 Score=39.53 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=91.9
Q ss_pred HHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcch
Q 010057 334 VNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVP 413 (519)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (519)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...... ..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHHHHHHhCCHHH
Confidence 345689999999987765 46788999999999999999999999887432 335555666777766
Q ss_pred HHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 414 AAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
-.++-+..... .-++.....+...|+.++++++|.+. |-.| .........|..+.|.++.+++..
T Consensus 79 L~kla~iA~~~----g~~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 79 LSKMQNIAQTR----EDFGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHC----ccHHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHhCC
Confidence 66655544332 24677778888899999999998553 3222 122223346778889999887743
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.04 E-value=0.026 Score=58.01 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcc
Q 010057 299 ILLKKKNLVAIDS-LLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFP 377 (519)
Q Consensus 299 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (519)
.....++++.|.+ ++..+ ++......++..+.+.|.++.|+++.+. | . .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~--~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q--D---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H--H---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c--c---hheehhhhcCCHH
Confidence 4455778888766 54221 1122336677777778888888766531 1 1 1123345678888
Q ss_pred hHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 378 KVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+...++-+.....
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888775433 4667888888888999999999999888765 556666666677777666665555554
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 458 GIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 458 g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
| -++....+|.+.|++++|.+++.++..
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4 234444455666666666666655543
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.91 E-value=0.022 Score=40.83 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 432 TALIGVYFSAGSADKALKIYKTMCRKG------IHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 432 ~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
-.|...+.+.|+++.|...|++..+.- -.+....+..+..++.+.|++++|..+++++.++.|+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344555555555555555555544320 0122334555555555555555555555555555544
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.85 E-value=0.091 Score=45.04 Aligned_cols=94 Identities=9% Similarity=0.097 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHH
Q 010057 83 SSMKYVFELMQEKGINID---AVTYTSVMHWLSN-----AGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLN-DRVK 153 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~ 153 (519)
..|..++++..+. .|+ ...|..+...|.. .|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555555555554 333 3456666666666 367777777777666653221355566666666663 6677
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010057 154 EATDVYKEMIQRGLP--PNCYTYTVLM 178 (519)
Q Consensus 154 ~a~~~~~~m~~~g~~--p~~~~~~~li 178 (519)
++.+.+++.+..... |+....+.+-
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 777777776665444 5544444433
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.71 E-value=0.41 Score=35.33 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Q 010057 324 DSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGH 391 (519)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (519)
+...+...+..+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455566666777777777777777544 3466777777788888888888888888888877774
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.67 Score=36.44 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 76 FGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 76 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..+.|+++.|.++.+.+ -+...|..|-......|+++-|.+.|.+.. -+..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHHH
Confidence 34556666666665443 255566666666666666666666665542 123344444455555554
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFS 195 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 195 (519)
.++-+.....| -++.-..++.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44443333332 13334444455566666666553
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.20 E-value=0.22 Score=38.11 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAG---DVDGAVNIWEEMKLKECYP--TIVSYTAYMKILFLNDRVKEATDV 158 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 158 (519)
.+.+-|.+..+.|. ++..+...+..++++++ +.++++.+|++..+.. .| ....+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 45555555666666655 4446666666665542 12 233444444455666666666666
Q ss_pred HHHHHHC
Q 010057 159 YKEMIQR 165 (519)
Q Consensus 159 ~~~m~~~ 165 (519)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666653
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.59 E-value=0.36 Score=34.30 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 170 NCYTYTVLMEYLVRAGKYEEALEIFSKMQEA------GVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 170 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
+...+..|...+.+.++++.|...|+...+. .-.+...++..|..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344445555555555555555555554432 0112334555556666666666666666665554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.06 E-value=0.9 Score=39.02 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHCCCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 010057 119 GAVNIWEEMKLKECYPT---IVSYTAYMKILFL-----NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRA-GKYEE 189 (519)
Q Consensus 119 ~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~ 189 (519)
.|..++++..+. .|+ -..|..+...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 455555655554 344 4577788888887 488888888888888853221367777778888774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHH
Q 010057 190 ALEIFSKMQEAGVQ--PDKAACNILIE 214 (519)
Q Consensus 190 a~~~~~~m~~~g~~--p~~~~~~~li~ 214 (519)
+.+.+++....... |+....+.+-+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 88888888887655 66555555433
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.75 E-value=0.092 Score=38.58 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHhcccCcc
Q 010057 428 TATYTALIGVYFSAGSADK---ALKIYKTMCRKGIHP--SLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQAD 495 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 495 (519)
..+--.+.+++.+..+... ++.++++..+.+ .| ....+-.+.-++.+.|++++|.++++.+.+++|+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 4444445555555555444 566666655543 12 2233444445666667777777777666666664
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.47 E-value=1.4 Score=33.41 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCh------hhHHHHHHHHHH
Q 010057 100 DAVTYTSVMHWLSNAGDV------DGAVNIWEEMKL 129 (519)
Q Consensus 100 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~ 129 (519)
|..+|-..+...-+.|+. ++..++|++...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 444555555555555555 555555555444
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.96 E-value=0.65 Score=34.78 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred CCCchhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCcccccccc
Q 010057 425 QKCTATYTALIGVYFSAGSAD---KALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADALSKDA 501 (519)
Q Consensus 425 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 501 (519)
.+++.+--.+.+++.+..+.+ +++.++++....+-.-....+-.+.-++.+.|++++|.++.+.+.+++|+. ...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n--~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN--KQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC--HHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc--HHH
Confidence 355566666777787776544 578888888876322234455566678899999999999999999998863 233
Q ss_pred cchHHHHhh
Q 010057 502 VPMEEKICD 510 (519)
Q Consensus 502 ~~~~~~i~~ 510 (519)
.++...|.+
T Consensus 114 ~~Lk~~Ie~ 122 (144)
T 1y8m_A 114 GALKSMVED 122 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.93 E-value=1.3 Score=33.46 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChhhHHHHHHHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRI------SSMKYVFELMQEKGINIDAV----TYTSVMH---WLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~~ 129 (519)
+-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|.-+-- .+...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44677787777777777887 7777888877663 444321 1111111 11234677777777777765
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 130 KECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPP 169 (519)
Q Consensus 130 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 169 (519)
.+-.- ...|.....-=.+.|++..|.+++......+..|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42111 4455555555556777777777777777765443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.64 E-value=0.78 Score=33.68 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCChhh---HHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 99 IDAVTYTSVMHWLSNAGDVDG---AVNIWEEMKLKECYP--TIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|+..+-..+..++.++..... ++.+++++...+ .| .....-.|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555555544333 555555544432 11 122233333445555555555555555554
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.13 E-value=0.48 Score=34.95 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=51.2
Q ss_pred CCchhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhcccCccc
Q 010057 426 KCTATYTALIGVYFSAGSA---DKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKEKKSIQADA 496 (519)
Q Consensus 426 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 496 (519)
|++.+--.+.+++.+..+. .+++.++++..+.+-.-....+-.+.-++.+.|++++|.++.+.+.+++|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4455555666777776554 4578888888876521235566667778899999999999999999888864
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.09 E-value=0.97 Score=31.29 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
.=++.+-++.+....+.|++.+..+.+++|-|.+++..|.++|+-.+.+. .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34556666666667777777777777777777777777777777776542 223445666553
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.52 E-value=1.2 Score=40.82 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010057 102 VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ-----RGLPPNCYTYT 175 (519)
Q Consensus 102 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 175 (519)
.....++.++...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 355667888889999999999988887653 34778999999999999999999999988754 49999987754
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.42 E-value=0.00018 Score=65.60 Aligned_cols=89 Identities=8% Similarity=-0.074 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHH
Q 010057 359 ERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGV 437 (519)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~ 437 (519)
++.||-.+-.+|...+.+.-|.-.--.++-.. .-...++..|-..|.+++-+.+++.-... ..-...|+-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 55677777778888887776654444443211 11123566777888888888888765543 2335677778777
Q ss_pred HHhcCCHHHHHHHHHH
Q 010057 438 YFSAGSADKALKIYKT 453 (519)
Q Consensus 438 ~~~~g~~~~A~~~~~~ 453 (519)
|++- ++++..+.++.
T Consensus 273 YsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 273 YSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHSS-CTTHHHHHHTT
T ss_pred HHhc-CHHHHHHHHHH
Confidence 7775 55555555443
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.57 E-value=9.9 Score=35.42 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHH----HhcC
Q 010057 304 KNLVAIDSLLSGIMDK-----SIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL----IKLN 374 (519)
Q Consensus 304 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 374 (519)
+++..|.+.+-.+.+. +..........++..|...++++...+.+..+.+..-... .....+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCC
Confidence 5666776666555432 3455677788888899999999988888877765432222 2223333322 2333
Q ss_pred CcchHHHHHHHHHh-----cC-CCc---cchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCC-----chhHHHHHHHH
Q 010057 375 TFPKVAEIVEEMTK-----AG-HSL---GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKC-----TATYTALIGVY 438 (519)
Q Consensus 375 ~~~~a~~~~~~~~~-----~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----~~~~~~li~~~ 438 (519)
..+.... ...+.. .| +-. .......|...|...|++.+|.+++..+... +.+ ...|..-++.|
T Consensus 109 ~~d~~~~-~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTR-ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHH-HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3332111 111111 11 111 2233456778888899999999998876432 111 34677788888
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHhcc
Q 010057 439 FSAGSADKALKIYKTMCRK----GIHPS--LGTFNVLLAGLEKLGRVSDAEIYRKEKKS 491 (519)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~l~~~~~~~g~~~~a~~~~~~~~~ 491 (519)
...+++.+|..++++.... ...|+ ..-+...+..+...+++.+|-+.|.++-+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999998886432 11222 12455566677788888888777766543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.43 E-value=2 Score=39.32 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHH---hcCChhhHHHHHHHHHHC--CC-CCCh------------------hhHHHHHHHHHhcCCHHHH
Q 010057 100 DAVTYTSVMHWLS---NAGDVDGAVNIWEEMKLK--EC-YPTI------------------VSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 100 ~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~--~~-~p~~------------------~~~~~li~~~~~~~~~~~a 155 (519)
|...|..++.... ..|+.+.|.+.+.+.... |. -++. .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4455555554322 346777777777766543 21 1111 1122344455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 010057 156 TDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE-----AGVQPDKAAC 209 (519)
Q Consensus 156 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 209 (519)
...+..+... -+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 191 ~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 191 IAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7776666654 234666777777777777777777777766543 3677766543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.16 E-value=2.9 Score=41.65 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-CHH
Q 010057 104 YTSVMHWLSNAGD-VDGAVNIWEEMKLKECYPTIVS--YTAYMKILFLND-RVKEATDVYKEMIQR------GLPP-NCY 172 (519)
Q Consensus 104 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p-~~~ 172 (519)
...++..+...++ .+.|..+|+++... .|...+ ...++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555555 47788888887766 233222 222333333322 233455555444321 1111 111
Q ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 173 ----------TYTVLMEYLVRAGKYEEALEIFSKMQEAGVQP-DKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 173 ----------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
....-...+...|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111234556678888888888887764 34 4558888888888888888888777765
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.11 E-value=14 Score=34.34 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 010057 44 PPMEKAWLFFNWVSR----SRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLS----NAG 115 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g 115 (519)
++++.|++.+-.+.+ .............++..|...++++...+.+..+.+..-. .......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 567778876655542 2334556788899999999999999998888777654322 2333344444332 233
Q ss_pred ChhhHH--HHHHHHHH---CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHH
Q 010057 116 DVDGAV--NIWEEMKL---KECYP---TIVSYTAYMKILFLNDRVKEATDVYKEMIQR--GLPPN---CYTYTVLMEYLV 182 (519)
Q Consensus 116 ~~~~a~--~~~~~m~~---~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~ 182 (519)
..+... .+.+.... ..+-. .......|...+...|++.+|.+++.++... |.-+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333211 11111111 01111 1123356778899999999999999998753 22211 346677888999
Q ss_pred HcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 183 RAGKYEEALEIFSKMQE----AGVQPDK--AACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 183 ~~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
..+++.+|..++..+.. ....|+. ..+...+..+...+++..|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999988742 1222222 3566777788888999998888877654
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.03 E-value=9.7 Score=40.63 Aligned_cols=194 Identities=14% Similarity=0.065 Sum_probs=119.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhC----CC-------------
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKM----DL------------- 356 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~------------- 356 (519)
..++..+...+..+.+..+..-+ ..+...--.+..+|...|++++|.+.|.+.... ..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666667776666554332 123333345666788899999999999865321 00
Q ss_pred -----CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCcc----chhHHHHHHHHhcCCCcchHHHHhhhCCcCCCC
Q 010057 357 -----NLERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLG----VYLGALLIHRLGSARRPVPAAKIFSLLPEDQKC 427 (519)
Q Consensus 357 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 427 (519)
..-..-|..++..+.+.+.++.+.++-...++..-+.+ ...+..+++.+...|++++|...+-.++...--
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 00112377888899999999999999888876432222 226788899999999999999999877654333
Q ss_pred chhHHHHHHHHHhcCCHHH------------HHHHHHHHHHCC-CCCCcccH-HHHHHHHHhcCChhH-HHHHHHHhccc
Q 010057 428 TATYTALIGVYFSAGSADK------------ALKIYKTMCRKG-IHPSLGTF-NVLLAGLEKLGRVSD-AEIYRKEKKSI 492 (519)
Q Consensus 428 ~~~~~~li~~~~~~g~~~~------------A~~~~~~m~~~g-~~p~~~t~-~~l~~~~~~~g~~~~-a~~~~~~~~~~ 492 (519)
......|+..++..|..+. ..+++....+.- ...+...| ..|..=+...|++.+ |..+|+.+..+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 5567777777776665444 333433222110 01111234 444444466666655 56677776554
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.95 E-value=4.3 Score=28.15 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.-+..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.66 E-value=2.9 Score=41.62 Aligned_cols=129 Identities=13% Similarity=0.087 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHC------CCCC-Chhh
Q 010057 68 TYTTMLDIFGEAKR-ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD-VDGAVNIWEEMKLK------ECYP-TIVS 138 (519)
Q Consensus 68 ~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~p-~~~~ 138 (519)
.-..+++.+...++ .+.|..+|+.+.+.....+......++..+...++ --+|.+++.+..+. ...+ +...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 57899999999887332222222333443333332 22355555444321 1111 1110
Q ss_pred -----H-HHHH----HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 139 -----Y-TAYM----KILFLNDRVKEATDVYKEMIQRGLPP-NCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 139 -----~-~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+ ..|+ .-+...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1133 3356789999999999998885 44 57799999999999999999999988874
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.93 E-value=6.1 Score=29.13 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH
Q 010057 82 ISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMK 144 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 144 (519)
.=+..+-++.+....+.|++.+..+.+++|-+.+|+..|.++|+-.+.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33556666677777778888888888888888888888888888776552 233555666663
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.65 E-value=0.0015 Score=59.71 Aligned_cols=119 Identities=11% Similarity=-0.004 Sum_probs=66.1
Q ss_pred CCCcchhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHH
Q 010057 288 GPLSIDQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALI 367 (519)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (519)
..+.+|..+.......+.+.+|.+.|-+ .-|+..|..+|.+..+.|.+++-+.++...++..-.| ..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 3445666666666666555555433221 1244556677777777777777777776666543333 3334666
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhC
Q 010057 368 GILIKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLL 421 (519)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (519)
-+|++.+++.+..+++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 67777776654432221 244444455555566666666666555543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.24 E-value=13 Score=39.71 Aligned_cols=128 Identities=12% Similarity=0.020 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCC-C-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKEC-Y-PT--IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLME 179 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~-p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 179 (519)
|..++..+.+.|.++.+.++-....+... . ++ ...|..+.+++...|++++|-..+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 55566666666666666655544433211 1 11 11456666666666666666666666655422 2344444544
Q ss_pred HHHHc------------CCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHH
Q 010057 180 YLVRA------------GKYEEALEIFSKMQEAG--VQPDKAACNILIEKCCKAGETRTIILI-LRYMK 233 (519)
Q Consensus 180 ~~~~~------------~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~ 233 (519)
..+.. |..+++.+++..-.+.. +...+.-|..|=.-+...|++.+|-.+ |+.+.
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 44433 34456666665433211 111112344444445566776655444 44443
No 250
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=86.56 E-value=20 Score=33.07 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=77.8
Q ss_pred hhhhHHhhhccC--ChhHHHHHHHhCCCCCCHHHHHHHHhcC-------C-C-hHHHH--------HHHHHHhhcCCCCC
Q 010057 4 TISNVYKILKYS--TWDSAQDLLKNLPIKWDSYTVNQVLKTH-------P-P-MEKAW--------LFFNWVSRSRGFNH 64 (519)
Q Consensus 4 ~~~~i~~~~~~~--~~~~a~~~~~~~~~~p~~~~~~~ll~~~-------~-~-~~~A~--------~~~~~~~~~~~~~~ 64 (519)
++..+..+++.| ++..++.+++.+....+...|..++... . . ..+.. +++.....+.|..+
T Consensus 111 LidD~~~La~ag~~~~~~~l~l~~yL~~E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~ 190 (419)
T 3rjo_A 111 LINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTD 190 (419)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHGGGGGCCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455556666666 5566777777776666777777666543 1 1 01111 12222223344444
Q ss_pred C-----HHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 010057 65 D-----RFTYTTMLDIFGEAKR---ISSMKYVFELMQEKG----INIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKEC 132 (519)
Q Consensus 65 ~-----~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 132 (519)
+ ...-..++...|..|+ .+.|.+.|+.....+ ++||... .+...-.+ ..+.-..+++.....
T Consensus 191 ~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s-- 264 (419)
T 3rjo_A 191 EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS-- 264 (419)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC--
T ss_pred CchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC--
Confidence 3 1223445555556655 345666666655432 4444321 11111111 133333444444443
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 133 YPTIVSYTAYMKILFLNDRVKEATDVYKEMIQRG 166 (519)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 166 (519)
.+..--..++.+++...+.....++++......
T Consensus 265 -~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 265 -LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp -CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred -CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 234445566777777777777777776666544
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.11 E-value=3.3 Score=32.00 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=36.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHhC-CCCcCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKM-DLNLER-------TAYLALIGILIKLNTFPKVAEIVEEMTK 388 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 388 (519)
-++.+...+.++.|+-+...+... +..|+. .++..+.+++...+++.+|...|+..++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455566777776666654432 112221 2456677788888888888888888753
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.02 E-value=8.6 Score=28.38 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEA 200 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 200 (519)
-+..+-++.+....+.|++....+.+++|-+.+++..|..+|+-++..
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344445555555555666666666666666666666666666655543
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.51 E-value=2.8 Score=32.35 Aligned_cols=115 Identities=8% Similarity=0.005 Sum_probs=60.6
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhC----CCCCCH----------HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCH-H
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNL----PIKWDS----------YTVNQVLKTHPPMEKAWLFFNWVSRSRGFNHDR-F 67 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~----------~~~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 67 (519)
.+++.+..+...+.++.|+-+..-+ +..|+. .-+...+-..+++.+|...|++..+....-+.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567777777777777777777654 333442 223333344577777777777754322221211 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+...+ ........ .....++.+.--.+-.+|.+.++.++|+.+++.+...
T Consensus 102 ~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11111 00000000 0112234566666788889999999999998876443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.56 E-value=31 Score=31.34 Aligned_cols=224 Identities=8% Similarity=0.012 Sum_probs=118.2
Q ss_pred hhhHHhhhccCChhHHHHHHHhC----CCCCCHH---HHHHHHhcC----CC----hHHHHHHHHHHhhcCCCCCCHHHH
Q 010057 5 ISNVYKILKYSTWDSAQDLLKNL----PIKWDSY---TVNQVLKTH----PP----MEKAWLFFNWVSRSRGFNHDRFTY 69 (519)
Q Consensus 5 ~~~i~~~~~~~~~~~a~~~~~~~----~~~p~~~---~~~~ll~~~----~~----~~~A~~~~~~~~~~~~~~~~~~~~ 69 (519)
+.....|.+.|+.++..+++... +.-|-+. ....++..+ +. ++-..+.++|...+...=.....=
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577889999999999887 2222222 234445443 33 334455566663221100011112
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCChhhHH--
Q 010057 70 TTMLDIFGEAKRISSMKYVFELMQEK--GIN---IDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK--ECYPTIVSYT-- 140 (519)
Q Consensus 70 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~-- 140 (519)
.-++..|...|++.+|.+++..+.+. ... --..+|..-++.|...++..++...+...... .+.|+.....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 35778888999999998888887762 111 11345666778888889999999888877543 2222332221
Q ss_pred HHH--HHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHH
Q 010057 141 AYM--KILF-LNDRVKEATDVYKEMIQRGLPPN------CYTYTVLMEYLVRAGKYEEALEIFS-KMQEAGVQPDKAACN 210 (519)
Q Consensus 141 ~li--~~~~-~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~ 210 (519)
-.. ..+. ..+++..|...|-+..+.=-... ...|..|... -.++..+...++. .....-..|....+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei~~l~ 260 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccHHHHH
Confidence 111 2344 67888888887766543100111 1123222222 2223222222221 111111245555666
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 010057 211 ILIEKCCKAGETRTIILILRY 231 (519)
Q Consensus 211 ~li~~~~~~g~~~~a~~~~~~ 231 (519)
.++.+| ..+++.....++..
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHH
Confidence 666665 45677666666554
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.93 E-value=16 Score=26.99 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 99 IDAVTYTSVMHWLSNAGDV---DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|+..+--.+..++.++.+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444432 24455555554433111233344444455555555555555555554
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.17 E-value=11 Score=30.30 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=35.0
Q ss_pred CCCcchHHHHhhhCCcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 408 ARRPVPAAKIFSLLPEDQ---KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 408 ~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
++...++.++|..|...+ .-...|......+...|++.+|.++|+.-++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444557777777665542 123456667777777777777777777777776555
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.07 E-value=32 Score=31.80 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHH--H
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKE--CYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ---RGLPPNCYTY--T 175 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~--~ 175 (519)
++..+...|.+.|+++.|.+.|.++.... ..--...+-..++.+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667777777777777777777776542 222345666777777777777777777776643 2222222110 0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010057 176 VLMEYLVRAGKYEEALEIFSKMQE 199 (519)
Q Consensus 176 ~li~~~~~~~~~~~a~~~~~~m~~ 199 (519)
.-...+...+++..|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111122345677777777766544
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.34 E-value=26 Score=32.34 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010057 173 TYTVLMEYLVRAGKYEEALEIFSKMQEA--GVQPDKAACNILIEKCCKAGETRTIILILRYMK 233 (519)
Q Consensus 173 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 233 (519)
+...+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+..+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445566666666666666666666543 222223455556666666666666666666544
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.88 E-value=9 Score=32.37 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=25.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 129 (519)
.+.|+++++.+....-.+.... |...-..++..+|-.|++++|..-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555444444444322 444444555555555555555555544443
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.29 E-value=19 Score=24.91 Aligned_cols=77 Identities=8% Similarity=-0.048 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTML--DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
.+.++|..+-+|+.. .++ .-...+| ..+.+.|++++|..+.+.+. .||...|.+|-. .+.|..+++.
T Consensus 20 H~HqEA~tIAdwL~~----~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 20 HCHEEALCIAEWLER----LGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TCHHHHHHHHHHHHH----TTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh----CCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 455666666666632 222 2222232 33455666666665554333 456665555532 3555555555
Q ss_pred HHHHHHHHCC
Q 010057 122 NIWEEMKLKE 131 (519)
Q Consensus 122 ~~~~~m~~~~ 131 (519)
.-+.++...|
T Consensus 89 ~rL~~la~sg 98 (115)
T 2uwj_G 89 RRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHhCC
Confidence 5555555543
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.07 E-value=14 Score=31.30 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=21.7
Q ss_pred hcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 113 NAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
+.|+++++++....-.+.. +-|...-..++..+|-.|+++.|.+-++...+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444433332 11333444444444444444444444444433
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.37 E-value=20 Score=24.82 Aligned_cols=77 Identities=8% Similarity=-0.004 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010057 44 PPMEKAWLFFNWVSRSRGFNHDRFTYTTML--DIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAV 121 (519)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 121 (519)
.+.++|..+-+|+.. .++ .-...+| ..+.+.|++++|..+.+.+. .||...|.+|-. .+.|..+++.
T Consensus 21 H~HqEA~tIAdwL~~----~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHL----KGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHH----TTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHh----CCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 455666666666532 222 2222232 33455566666666554433 456555555533 3455555555
Q ss_pred HHHHHHHHCC
Q 010057 122 NIWEEMKLKE 131 (519)
Q Consensus 122 ~~~~~m~~~~ 131 (519)
.-+.++...|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 5555554443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.97 E-value=20 Score=24.73 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=62.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSV--MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEAT 156 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 156 (519)
....++|..+-+.+...+. .-...| +..+...|++++|..+.+.+. .||...|.+|... +.|..+++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le 88 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALD 88 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHH
Confidence 3467899999988888753 222333 346678899999998876653 7899999887654 788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q 010057 157 DVYKEMIQRGLPPNCYTYTV 176 (519)
Q Consensus 157 ~~~~~m~~~g~~p~~~~~~~ 176 (519)
.-+..+...| .|....|..
T Consensus 89 ~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHH
Confidence 8888887775 345555544
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.19 E-value=22 Score=24.67 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=62.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSV--MHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEAT 156 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 156 (519)
....++|..+-+.+...+. .-...| +..+...|++++|..+.+.+. .||...|.+|... +.|..+++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le 89 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALE 89 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHH
Confidence 4467899999998888753 222333 346678999999999887654 7899999888654 778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q 010057 157 DVYKEMIQRGLPPNCYTYTV 176 (519)
Q Consensus 157 ~~~~~m~~~g~~p~~~~~~~ 176 (519)
.-+.++...| .|....|..
T Consensus 90 ~rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHH
Confidence 8887887765 345555543
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.42 E-value=97 Score=31.90 Aligned_cols=295 Identities=13% Similarity=0.064 Sum_probs=140.8
Q ss_pred HHHHHHHHhcCChhHH-HH-HHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhhHHHHHHHHHHCC--CCCChhhHHHHHH
Q 010057 70 TTMLDIFGEAKRISSM-KY-VFELMQEKGINIDAVTYTSV-MHWLSNAGDVDGAVNIWEEMKLKE--CYPTIVSYTAYMK 144 (519)
Q Consensus 70 ~~li~~~~~~~~~~~a-~~-~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~ 144 (519)
.++..++...|-.... .. ..+.+-+. . +-.-+.++ --+....|+.++++.+++.....+ -.|....-..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 4566777777743322 22 22344443 2 33334333 335677899999988888765421 1122233334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHH--HH--HH
Q 010057 145 ILFLNDRVKEATDVYKEMIQRGL-------PPNCYTYTVLMEYLVRAGK-YEEALEIFSKMQEAGVQPDKAA--CN--IL 212 (519)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~--~~--~l 212 (519)
+....|..+++..++.+.....- .+....-.++.-+.+-.|. -+++.+.+..+.... +..+ .. +|
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 56666766678888877665311 0111222333333333342 245566666655431 2221 12 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcCchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcc
Q 010057 213 IEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVADENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSI 292 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (519)
...++-.|+.+....++..+.+.. +......+.
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aa-------------------------------------------- 529 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLA-------------------------------------------- 529 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHH--------------------------------------------
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHH--------------------------------------------
Confidence 334445677777777777766532 122111111
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH--HHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVI--STIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGIL 370 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (519)
+.......|+-+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++
T Consensus 530 ---lgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGl 604 (963)
T 4ady_A 530 ---VGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGF 604 (963)
T ss_dssp ---HHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHH
T ss_pred ---HHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHh
Confidence 111222344445555555555432 12222111 123335666666655555666666532 12222222233333
Q ss_pred HhcCCcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCc-chHHHHhhhCCc
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRP-VPAAKIFSLLPE 423 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 423 (519)
...|+.+.+.+++..+.+.+ .|......++.-+....|.. .++..++..+..
T Consensus 605 I~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 605 VLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 44566666666665555443 34444444444444444443 355556655544
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.13 E-value=80 Score=30.79 Aligned_cols=117 Identities=6% Similarity=-0.035 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhcC-CCccHH--HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCcchHH
Q 010057 304 KNLVAIDSLLSGIMDKS-IQLDSA--VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTFPKVA 380 (519)
Q Consensus 304 ~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 380 (519)
.+.+.|...+....... ..+... ....+...+...+...++...+....... ++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 35666666666665432 221111 12222223333332445555555443322 23333333333444557777777
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCc
Q 010057 381 EIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPE 423 (519)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 423 (519)
..|..|..... ....-.--+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 76666644221 1122222234455566677777776666654
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.87 E-value=43 Score=26.83 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 82 ISSMKYVFELMQEKGINID-AVTYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 82 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
...+.++|..|...|+.-. ..-|......+...|++.+|.++|+.-.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4445555555544443322 223444444444445555555555544444
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.86 E-value=34 Score=25.62 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010057 99 IDAVTYTSVMHWLSNAGDV---DGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVYKEMIQ 164 (519)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 164 (519)
|+..+--....++.++.+. .+++.+++++...+..-.....-.|.-++.+.|++++|.+..+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444332 23444444444432111222333333445555555555555555554
No 269
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=67.00 E-value=14 Score=21.99 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=28.4
Q ss_pred CChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHH
Q 010057 15 STWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFF 53 (519)
Q Consensus 15 ~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~ 53 (519)
.++++.++-+..||..+......+|....|+.+.|.+.+
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 466778888888888655555666666678888888654
No 270
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=64.96 E-value=11 Score=21.66 Aligned_cols=38 Identities=8% Similarity=0.014 Sum_probs=26.2
Q ss_pred ChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHH
Q 010057 16 TWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFF 53 (519)
Q Consensus 16 ~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~ 53 (519)
++++-++-+..||.........+|....|+.+.|.+.+
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 45666777778887534445666667778888888754
No 271
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=63.27 E-value=51 Score=25.60 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=55.6
Q ss_pred chhhhhHHhhhccCChhHHHHHHHhC-CCCCCHHH-HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 010057 2 RDTISNVYKILKYSTWDSAQDLLKNL-PIKWDSYT-VNQVLKTHPPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEA 79 (519)
Q Consensus 2 ~~~~~~i~~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~ll~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 79 (519)
++++..|....+..+++.+.-+-.-+ +..|.-.. +...|--.|.+.+++-++...- ..+..-|..+ .|-+.
T Consensus 3 ~~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN-----T~Ts~YYk~L--Cy~kl 75 (242)
T 3kae_A 3 SKLIGKICKSIRYRDYETAIFLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHLHKLN-----TCTSKYYESL--CYKKK 75 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHHHC----CTHHHHHHHHHHTTCHHHHHHHHHTCC-----BHHHHHHHHH--HHHHT
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHccCChHHHhhhhhhhhhcchHhHHHHHHHhcc-----hHHHHHHHHH--HHHHH
Confidence 46888999999999999988776655 43442222 2233334488888887665321 2222334332 34567
Q ss_pred CChhHHHHHHHHHHhCCCC
Q 010057 80 KRISSMKYVFELMQEKGIN 98 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~ 98 (519)
+++..|...++.+.+..+.
T Consensus 76 KdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 76 KDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp TCHHHHHHHHHHHHTTCSB
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 8999999999998865443
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.11 E-value=1.2e+02 Score=29.68 Aligned_cols=154 Identities=7% Similarity=-0.034 Sum_probs=95.6
Q ss_pred hhhhhHHhhhccCChhHHHHHHHhCCCCC--CHHHHHHHHhcCC--ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 010057 3 DTISNVYKILKYSTWDSAQDLLKNLPIKW--DSYTVNQVLKTHP--PMEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGE 78 (519)
Q Consensus 3 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~p--~~~~~~~ll~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 78 (519)
+.+..+...++.|++..+.++...++-.| .-..|..+....+ ...+...+++.. .+.+.....-+..+..+.+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHh
Confidence 34566677889999999999988872222 2235556655543 455555555532 3333344445667778888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH--HH
Q 010057 79 AKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKE--AT 156 (519)
Q Consensus 79 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~--a~ 156 (519)
.+++......+.. .+.+...-.....+....|+..+|......+=..| ......+..++..+.+.|.+.. ..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 8888887775532 23355555667778888899877777666654443 2356677888888887665433 33
Q ss_pred HHHHHHHHC
Q 010057 157 DVYKEMIQR 165 (519)
Q Consensus 157 ~~~~~m~~~ 165 (519)
+-++.+...
T Consensus 159 ~R~~~al~~ 167 (618)
T 1qsa_A 159 ERIRLAMKA 167 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 334444443
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.63 E-value=85 Score=27.64 Aligned_cols=164 Identities=16% Similarity=0.062 Sum_probs=80.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 010057 106 SVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEATDVY----KEMIQRGLPPNCYTYTVLMEYL 181 (519)
Q Consensus 106 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~li~~~ 181 (519)
++..-|.+.+++++|++++-.-. ..+.+.|+...|-++- +-+.+.++++|......|+..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444555666666666544321 1223334443333332 3344455566666555555555
Q ss_pred HHcCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhc
Q 010057 182 VRAGKYE-EALEIFSKMQ----EAG--VQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVA 254 (519)
Q Consensus 182 ~~~~~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (519)
.....-+ .-..+.+.+. +.| ..-|......+...|.+.+++.+|+..|- .+..+....+..++..+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 5443211 1122333332 112 22355666677777888888777776653 12222224555555444332
Q ss_pred CchhHHHhhhCCCCCcccccchhhhhhHHhccCCCCcchhHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 255 DENDSLLWQVHPQFSPEFISDNDAVEFVTTDIEGPLSIDQGLVLILLKKKNLVAIDSLLSGIM 317 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (519)
....+. ..+....+..|...+++..|..+++...
T Consensus 181 ~~~~e~-----------------------------dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 181 DESHTA-----------------------------PLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCGGGH-----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccH-----------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 221110 1134456667778888888877766554
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.28 E-value=48 Score=25.17 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID-AVTYTSVMHWLSNAGDVDGAVNIWE 125 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 125 (519)
+++.+.|..- ....-|+.-...-|..--. .+.+.++|..|...|+.-. ..-|......+...|++.+|.++|+
T Consensus 52 Erc~~~f~~~---~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDK---KKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTC---GGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccc---ccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555432 3346666554444443322 3448999999998887644 4567778888889999999999999
Q ss_pred HHHHCCCCCC
Q 010057 126 EMKLKECYPT 135 (519)
Q Consensus 126 ~m~~~~~~p~ 135 (519)
.-.+.+-+|-
T Consensus 126 ~Gi~~~A~P~ 135 (152)
T 4a1g_A 126 RGIQNQAEPR 135 (152)
T ss_dssp HHHHTTCBSH
T ss_pred HHHHcCCccH
Confidence 9888865553
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.97 E-value=44 Score=25.78 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=25.5
Q ss_pred hHHHHhhhCCcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010057 413 PAAKIFSLLPEDQ---KCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP 461 (519)
Q Consensus 413 ~A~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (519)
++.++|..|...+ .-...|......+...|++.+|.++|+.-++.+..|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3555555554431 113345555555555666666666666655555444
No 276
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.74 E-value=15 Score=28.39 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEK--GINIDAVTYTSVMHWLSNAGDV 117 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 117 (519)
+.+.+-+....+..|+..+.. -..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444554445556555443 234445555555566666666666655 4445555555555555555544
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.02 E-value=88 Score=27.27 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCCcc-hHHHHHHHHH----hcC--CCccchhHHHHHHHHhcCCCcchHHHHhhhCC
Q 010057 350 YSVKMDLNLERTAYLALIGILIKLNTFP-KVAEIVEEMT----KAG--HSLGVYLGALLIHRLGSARRPVPAAKIFSLLP 422 (519)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (519)
-..+.+++++......++..+.....-+ .-.++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 3334455555555555555544432111 1223333333 121 11244555566666666666666666553211
Q ss_pred ----------------c---CCC-CchhH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 423 ----------------E---DQK-CTATY-TALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 423 ----------------~---~~~-~~~~~-~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
+ ..| ....| .-.+--|.-.|+...|..+|+...
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0 001 01111 222333455678888888887764
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.97 E-value=1.6e+02 Score=30.34 Aligned_cols=211 Identities=12% Similarity=0.025 Sum_probs=115.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH-HH---HHHHHHHhcC
Q 010057 299 ILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA-YL---ALIGILIKLN 374 (519)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~ 374 (519)
.+...|+.+....+++.+.... .-+..-+..+.-++...|+.+.+..+++.+.... ++.. |. ++..+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCC
Confidence 4556677777788887766532 2122223333334457788888888888887642 3222 33 3445677888
Q ss_pred CcchHHHHHHHHHhcCCCccchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCH-HHHHHHHH
Q 010057 375 TFPKVAEIVEEMTKAGHSLGVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSA-DKALKIYK 452 (519)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 452 (519)
+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+. .|.+..-..+.-+....|+. .+|+.++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 9877777888888653 233444444444555678888888998877654 23222223333334444443 57888888
Q ss_pred HHHHCCCCCCcccHHHHHHHHH--hcCChh----HHHHHHHHhcccCcc-cccccccchHHHHhhhhccCCC
Q 010057 453 TMCRKGIHPSLGTFNVLLAGLE--KLGRVS----DAEIYRKEKKSIQAD-ALSKDAVPMEEKICDLLYGGDG 517 (519)
Q Consensus 453 ~m~~~g~~p~~~t~~~l~~~~~--~~g~~~----~a~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 517 (519)
.+... +|..+-...+.++. -.|..+ +..++.+++.+...+ .-.++..-...+=.+++..|.|
T Consensus 654 ~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 654 PLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 88643 34444333333433 333222 244444443332211 1123333344455556665554
No 279
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=55.80 E-value=18 Score=21.59 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=25.4
Q ss_pred ChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHH
Q 010057 16 TWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFN 54 (519)
Q Consensus 16 ~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~ 54 (519)
++++.++.+..||..+......+|....|+.+.|.+.+-
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345566777778875455555566666678888876653
No 280
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.96 E-value=20 Score=21.48 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=29.2
Q ss_pred CChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHH
Q 010057 15 STWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNW 55 (519)
Q Consensus 15 ~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~ 55 (519)
.++++-++-+..||.........+|....|+.+.|++.+-.
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45677788888888764444566777777899988876654
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.59 E-value=68 Score=24.35 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 010057 104 YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR--VKEATDVYKEMIQRGLP 168 (519)
Q Consensus 104 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 168 (519)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 445566666666777777666666321111 12223333334443222 34455666666655543
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.53 E-value=77 Score=26.25 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=10.2
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 010057 108 MHWLSNAGDVDGAVNIWEEMK 128 (519)
Q Consensus 108 i~~~~~~g~~~~a~~~~~~m~ 128 (519)
+..+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 344444555555555555443
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.88 E-value=52 Score=27.71 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=12.8
Q ss_pred hcCCcchHHHHHHHHHhcCCCcc
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLG 394 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~ 394 (519)
..++.....++.+.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34554555566666666665443
No 284
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=53.32 E-value=2.1e+02 Score=29.57 Aligned_cols=48 Identities=6% Similarity=-0.131 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010057 148 LNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 198 (519)
+.|..++-..+++..... .+..--..++.+++...+.+...++++...
T Consensus 738 ~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 344444444444444442 233333445555555555555555554443
No 285
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.62 E-value=23 Score=22.99 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=28.4
Q ss_pred CChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHH
Q 010057 15 STWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFN 54 (519)
Q Consensus 15 ~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~ 54 (519)
.++++-++-+..||+........+|....|+.+.|++++-
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4667777888888875445556666667788888886653
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.56 E-value=99 Score=25.59 Aligned_cols=91 Identities=9% Similarity=0.055 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010057 141 AYMKILFLNDRVKEATDVYKEMIQ--RGLPP----NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIE 214 (519)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~m~~--~g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 214 (519)
--++.+....++++|.+++++..+ .++++ +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 456788899999999999988765 22332 112223334444443344444555555532 456677777889
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010057 215 KCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 215 ~~~~~g~~~~a~~~~~~~~~ 234 (519)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 99999999999999877654
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.40 E-value=62 Score=25.14 Aligned_cols=53 Identities=11% Similarity=-0.071 Sum_probs=39.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------------cccHHHHHHHHHhcCChhHHHHHHHHh
Q 010057 437 VYFSAGSADKALKIYKTMCRKGIHPS-----------------LGTFNVLLAGLEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----------------~~t~~~l~~~~~~~g~~~~a~~~~~~~ 489 (519)
+|-+.+++.+|+..++..++..+..| ..-++.+...|...|+.++|...+...
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 56677888899988888886554422 123666777889999999999998754
No 288
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.33 E-value=73 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=9.1
Q ss_pred HHHHhcCChhhHHHHHHHHHHC
Q 010057 109 HWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
..+...+..-.|.++++.+.+.
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQK 55 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHh
Confidence 3333333344444444444443
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.25 E-value=31 Score=27.27 Aligned_cols=159 Identities=12% Similarity=0.026 Sum_probs=69.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH---HHHHHHHHHh
Q 010057 296 LVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA---YLALIGILIK 372 (519)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 372 (519)
.+...+..|+.+....++..-...--..+..-.+.+.. .+..|+. ++++.+.+.|..++... .+.+ ...+.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~ 81 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSPY-LYAGA 81 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHH-HHHHH
Confidence 45556677777777777654221101112222223332 3445554 34445555555444321 2222 33344
Q ss_pred cCCcchHHHHHHHHHhcCCCc---cchhHHHHHHHHhcCCCcchHHHHhhhCCcC--CCCchhHHHHHHHHHhcCCHHHH
Q 010057 373 LNTFPKVAEIVEEMTKAGHSL---GVYLGALLIHRLGSARRPVPAAKIFSLLPED--QKCTATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 447 (519)
.|+.+-+..+++. .+..+ +..-.+ .+...+..|+.+-+..+++.-... ..|..-++.+..+.........-
T Consensus 82 ~~~~~~~~~Ll~~---~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 82 QGRTEILAYMLKH---ATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp TTCHHHHHHHHHH---SCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred cCCHHHHHHHHhc---cCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 5655444333322 22111 111111 223334556666666666554211 22333344444444333223333
Q ss_pred HHHHHHHHHCCCCCCcc
Q 010057 448 LKIYKTMCRKGIHPSLG 464 (519)
Q Consensus 448 ~~~~~~m~~~g~~p~~~ 464 (519)
.++.+.+.+.|..|+..
T Consensus 158 ~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 158 QDIVKLLMENGADQSIK 174 (201)
T ss_dssp HHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHCCCCCCcc
Confidence 56666677777666543
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.86 E-value=1.3e+02 Score=26.59 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHH
Q 010057 359 ERTAYLALIGILIKLNTFPKVAEIV 383 (519)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~~a~~~~ 383 (519)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444555666666666666665544
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.42 E-value=77 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 010057 118 DGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC 171 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 171 (519)
+.+.++|..|...|+--. +.-|-.....+...|++++|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 458999999998876543 456788888889999999999999999998777744
No 292
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=50.44 E-value=18 Score=22.16 Aligned_cols=38 Identities=8% Similarity=0.014 Sum_probs=24.6
Q ss_pred ChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHH
Q 010057 16 TWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFF 53 (519)
Q Consensus 16 ~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~ 53 (519)
++++-++-+..||.........+|....|+.+.|++.+
T Consensus 16 ~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 16 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 45556667777787433444566666678888887655
No 293
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.76 E-value=42 Score=20.54 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred hhHHHHHHHhC-CCCCCHHHHHHHHhcC-CChHHHHHHHHHHhhcCCCCCC
Q 010057 17 WDSAQDLLKNL-PIKWDSYTVNQVLKTH-PPMEKAWLFFNWVSRSRGFNHD 65 (519)
Q Consensus 17 ~~~a~~~~~~~-~~~p~~~~~~~ll~~~-~~~~~A~~~~~~~~~~~~~~~~ 65 (519)
.++.++.+..| +. .+..+...+|.++ |+.+.|+..+-.| ...+..|+
T Consensus 9 ~ee~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m-~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQM-GEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHS-SCCCCSCC
T ss_pred CHHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcC-cCCCCCCC
Confidence 45666677776 43 4677777777777 7888888888877 34555554
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.51 E-value=98 Score=24.64 Aligned_cols=172 Identities=11% Similarity=0.010 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
.++...-...+..+.+.+..+....+.+ +.+. ++..+-...+.++.+.++.+.. ..+.++.. .+|...-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 4666666666777777776444444443 3332 4666777777777777764433 33333332 2466666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 222 (519)
+.++.+.++.+ +...+.++.+ .++...-...+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.+..
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 77777777644 3444444543 367777777777777777654 3333444433 35667777777788877764
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHhhc
Q 010057 223 RTIILILRYMKENRLALRYPVFKEALQTFKVA 254 (519)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (519)
+ +...+..+.+. ++...-..+..++...
T Consensus 174 ~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 R-VRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp H-HHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred h-HHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 3 44444444442 2334444444444433
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.48 E-value=76 Score=23.77 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHH
Q 010057 118 DGAVNIWEEMKL 129 (519)
Q Consensus 118 ~~a~~~~~~m~~ 129 (519)
-.|.++++.+.+
T Consensus 38 ~sa~ei~~~l~~ 49 (145)
T 2fe3_A 38 PTADDIYKALEG 49 (145)
T ss_dssp CCHHHHHHHHGG
T ss_pred CCHHHHHHHHHH
Confidence 334444444333
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.18 E-value=75 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHH
Q 010057 105 TSVMHWLSNAGDVDGAVNIWEEM 127 (519)
Q Consensus 105 ~~li~~~~~~g~~~~a~~~~~~m 127 (519)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44555555556666666666655
No 297
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.04 E-value=21 Score=22.62 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=28.0
Q ss_pred ChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHHHHH
Q 010057 16 TWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFFNWV 56 (519)
Q Consensus 16 ~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~~~~ 56 (519)
++...++-+..||.........+|....|+++.|++++-.-
T Consensus 18 ~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 18 RFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45567777778887544444667777778888888766543
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.01 E-value=73 Score=23.89 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=30.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 58 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
+..|+.++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 45555555442 22333344444 55666677666666555566655555555555554
No 299
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.68 E-value=32 Score=28.22 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=67.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhh--HHHHHHHHHhc
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDAVT--YTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS--YTAYMKILFLN 149 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~ 149 (519)
...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 344567788777777776666655443221 1123444455666543 334444555544322 12334444566
Q ss_pred CCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChH
Q 010057 150 DRVKEATDVYKEMIQRGLPP---NCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKA---ACNILIEKCCKAGETR 223 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~ 223 (519)
|+.+-+..+++.....++.+ +..-.+. +...+..|+.+-+ +.+.+.|..++.. .-.+.+...++.|+.+
T Consensus 90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp TCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 77666555554433111111 1111222 2333455555443 3344444443321 1223344455667765
Q ss_pred HHHHHH
Q 010057 224 TIILIL 229 (519)
Q Consensus 224 ~a~~~~ 229 (519)
-+..++
T Consensus 165 ~v~~Ll 170 (241)
T 1k1a_A 165 MVQLLL 170 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 300
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=47.35 E-value=34 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=21.9
Q ss_pred CChhHHHHHHHhCCCCCCHHHHHHHHhcCCChHHHHHHH
Q 010057 15 STWDSAQDLLKNLPIKWDSYTVNQVLKTHPPMEKAWLFF 53 (519)
Q Consensus 15 ~~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~A~~~~ 53 (519)
.++++-++-+.+||.........+|....|+.+.|++.+
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 345555666666665433444555555556666666554
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.22 E-value=1.6e+02 Score=26.61 Aligned_cols=165 Identities=6% Similarity=-0.014 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhc-CChhhHHHHHHHHHHCCCCCChhhH---
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKG-INI---DAVTYTSVMHWLSNA-GDVDGAVNIWEEMKLKECYPTIVSY--- 139 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--- 139 (519)
....|.+.|.+.|+.++..+++......= .-| .......++..+... +..+.-.++..+..+..- -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45678889999999999999988765421 111 234566777777664 334444444444433210 022344
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHH
Q 010057 140 ---TAYMKILFLNDRVKEATDVYKEMIQR--GLPPN---CYTYTVLMEYLVRAGKYEEALEIFSKMQEA--GVQPDKAAC 209 (519)
Q Consensus 140 ---~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~ 209 (519)
.-++..|...|++.+|.+++.++.+. ..... ...|..-+..|...+++.++...+...... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25788999999999999999988873 11111 234666778899999999999999887543 233444433
Q ss_pred HHH----HHHHH-hcCChHHHHHHHHHHH
Q 010057 210 NIL----IEKCC-KAGETRTIILILRYMK 233 (519)
Q Consensus 210 ~~l----i~~~~-~~g~~~~a~~~~~~~~ 233 (519)
..+ ...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222 22345 6899999988887654
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.15 E-value=91 Score=23.64 Aligned_cols=65 Identities=9% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHCCCC
Q 010057 68 TYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD--VDGAVNIWEEMKLKECY 133 (519)
Q Consensus 68 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 133 (519)
..+.+|.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3567888899999999999999998643222 23445555555555333 45677788888766543
No 303
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=46.76 E-value=28 Score=22.61 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=29.4
Q ss_pred HHHhhhCCcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 415 AKIFSLLPEDQKCTATYTALIGVYFSAGSADKALKIYKTMC 455 (519)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 455 (519)
..++.+++..+|++.||+-+...+-+.--..+++.+.+++.
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35677888888888999888877766666666666665543
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.30 E-value=41 Score=28.07 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=97.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH-------HHHHHHHHHh--ccCChhhHHHHHHHHHhCC---------
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSA-------VISTIIEVNC--DHRRRDGALLAFEYSVKMD--------- 355 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~~~~~~--------- 355 (519)
...+...++.|+.+....+++.+...+..++.. -.+.+..+.. +.|+.+-+..+++.-...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 456677788899998888888777766655533 2344444432 5677776666666543311
Q ss_pred CC-cCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCCccchh----------------HHHHHHHHhcCCCcchHHHHh
Q 010057 356 LN-LERTAYLALIGILIKLNTFPKVAEIVEEMTKAGHSLGVYL----------------GALLIHRLGSARRPVPAAKIF 418 (519)
Q Consensus 356 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~ 418 (519)
+. .+..-.+.| ...+..|+.+ +.+.+++.|..++... ....+...+..|+.+-+..++
T Consensus 86 ~~~~d~~g~t~L-~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 86 FRDVYYRGQTAL-HIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp BCCSSEESBCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCCCCHH-HHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 11 010112223 3344556654 4455555665554332 223344445667777676666
Q ss_pred hh---CCc-CCCCchhHHHHHHHHHhcCC-H---HHHHHHHHHHHHCCCCC----------CcccHHHHHHHHHhcCChh
Q 010057 419 SL---LPE-DQKCTATYTALIGVYFSAGS-A---DKALKIYKTMCRKGIHP----------SLGTFNVLLAGLEKLGRVS 480 (519)
Q Consensus 419 ~~---~~~-~~~~~~~~~~li~~~~~~g~-~---~~A~~~~~~m~~~g~~p----------~~~t~~~l~~~~~~~g~~~ 480 (519)
+. -.. ...|..-++.|..+...... . +...++.+.+.+.|..+ |..-.+. +...++.|..+
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTGKIG 239 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTTCHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcCCHH
Confidence 62 111 12333344555555443222 1 22234555555554332 2223333 33445668887
Q ss_pred HHHHHHHHh
Q 010057 481 DAEIYRKEK 489 (519)
Q Consensus 481 ~a~~~~~~~ 489 (519)
-+..++++-
T Consensus 240 ~v~~Ll~~g 248 (260)
T 3jxi_A 240 IFQHIIRRE 248 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 777777654
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.13 E-value=91 Score=23.32 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=42.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010057 58 RSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVD 118 (519)
Q Consensus 58 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 118 (519)
+..|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 14 ~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 14 KETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 567777765533 445555566777889999999988877777777777777777777544
No 306
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.28 E-value=77 Score=24.87 Aligned_cols=156 Identities=11% Similarity=0.096 Sum_probs=76.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhh---HHHHHHHHHh-cCC
Q 010057 77 GEAKRISSMKYVFELMQEKGINIDA-VTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVS---YTAYMKILFL-NDR 151 (519)
Q Consensus 77 ~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~-~~~ 151 (519)
++.|+.+....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+
T Consensus 14 a~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 14 AMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 466777776655532 222111 1122345555566766666677777777777665432 2333333322 233
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCH-HHHHHHHHHHHH-cCCCCCHHHH--HHHHHHHHhcCChHH
Q 010057 152 VKEATDVYKEMIQRGLPPNCYT---YTVLMEYLVRAGKY-EEALEIFSKMQE-AGVQPDKAAC--NILIEKCCKAGETRT 224 (519)
Q Consensus 152 ~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~-~~a~~~~~~m~~-~g~~p~~~~~--~~li~~~~~~g~~~~ 224 (519)
.....++.+-+.+.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++.... .+-+....+.|..+.
T Consensus 90 ~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 4455667777777776655432 11222222233322 344556666666 6655543211 123344455666655
Q ss_pred HHHHHHHHHHcC
Q 010057 225 IILILRYMKENR 236 (519)
Q Consensus 225 a~~~~~~~~~~~ 236 (519)
+.-+.+.+++.+
T Consensus 170 v~~L~~~~~~~~ 181 (186)
T 3t8k_A 170 LKMMEDYIKKYN 181 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 544444444433
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.03 E-value=1e+02 Score=23.70 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 010057 118 DGAVNIWEEMKLKECYPT-IVSYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNC 171 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 171 (519)
+.+.++|..|...|+--. ..-|-.....+...|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 335666777766655433 334555666666677777777777776666655544
No 308
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.91 E-value=1e+02 Score=23.55 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCC
Q 010057 81 RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECY 133 (519)
Q Consensus 81 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 133 (519)
..+.+..+++.+.+.|+.-|..--...++...+.| -....+-.++...|+.
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 34556677777777777644443444555555544 3455677777777775
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.36 E-value=1.8e+02 Score=25.93 Aligned_cols=214 Identities=9% Similarity=0.043 Sum_probs=0.0
Q ss_pred chhhhhHHhhhccCChhHHHHHHHhC--CCCCCHHHHHHHHhcC----CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010057 2 RDTISNVYKILKYSTWDSAQDLLKNL--PIKWDSYTVNQVLKTH----PPMEKAWLFFNWVSRSRGFNHDRFTYTTMLDI 75 (519)
Q Consensus 2 ~~~~~~i~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~ll~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 75 (519)
+.....|..|...++.++|.+.++++ +..-..++-..+-.+. ...+.+-.++..+.. ++-+.......+...
T Consensus 55 k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~--~~ls~~~i~~gf~~l 132 (358)
T 3eiq_C 55 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG--TVMSTNDVEKSFDKL 132 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT--TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q ss_pred HHhcCCh--------hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHC-----------------
Q 010057 76 FGEAKRI--------SSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLK----------------- 130 (519)
Q Consensus 76 ~~~~~~~--------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------------- 130 (519)
+....+. +-.-.++..+...++-|-.+........ .-..+.++++.....
T Consensus 133 le~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g 207 (358)
T 3eiq_C 133 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSG 207 (358)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCC
T ss_pred HHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHHhcCCC
Q ss_pred -CCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCC
Q 010057 131 -ECYPTIVS---YTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG--KYEEALEIFSKMQEAGVQP 204 (519)
Q Consensus 131 -~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p 204 (519)
|..|.... .+.++.-|...++.++|.+.++++..-... ...+...+..++-+.+ ..+.+.+++..+...|+-+
T Consensus 208 ~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 208 GGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Q ss_pred CHHHHHHHHHHHHhcCChH
Q 010057 205 DKAACNILIEKCCKAGETR 223 (519)
Q Consensus 205 ~~~~~~~li~~~~~~g~~~ 223 (519)
.......+.+.+....+..
T Consensus 287 ~~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 287 IDQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHhh
No 310
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.98 E-value=2.5e+02 Score=27.56 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 010057 141 AYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKA- 219 (519)
Q Consensus 141 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 219 (519)
.....+.-.|+++.|.+.+... ...+.+.+...+.. .|-+.....++..= .+ .| ..-+..||..|.+.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCCCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 4555666789999999987654 13344444444433 33222211111100 00 11 12366777777754
Q ss_pred --CChHHHHHHHHHH
Q 010057 220 --GETRTIILILRYM 232 (519)
Q Consensus 220 --g~~~~a~~~~~~~ 232 (519)
.++..|.++|-.+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 7888888887766
No 311
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.37 E-value=1.7e+02 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=16.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIM 317 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~ 317 (519)
...+..|...+++..|..+++...
T Consensus 192 ~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 192 SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345556667777877777776653
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.70 E-value=1e+02 Score=22.57 Aligned_cols=64 Identities=9% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHCCCC
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD--VDGAVNIWEEMKLKECY 133 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 133 (519)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 567888888999999999999998633222 23445555555555432 45677788888776543
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.47 E-value=83 Score=23.20 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 010057 119 GAVNIWEEMKL 129 (519)
Q Consensus 119 ~a~~~~~~m~~ 129 (519)
.|.++++.+.+
T Consensus 36 sa~ei~~~l~~ 46 (136)
T 1mzb_A 36 SAEDVYKALME 46 (136)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 33333333333
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.91 E-value=84 Score=25.67 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHH
Q 010057 47 EKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINID-AVTYTSVMHWLSNAGDVDGAVNIWE 125 (519)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 125 (519)
+++...|..- ..+.-|+.-...-|..- . ..+...++|..|...|+.-. ..-|......+...|++.+|.++|+
T Consensus 101 Erc~~~F~~~---~rYknD~RyLklWl~Ya-~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 101 ERCTREFVRN---PLYKDDVRYLRIWMQYV-N--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHTTTC---GGGTTCHHHHHHHHHHH-T--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccc---ccccCCHHHHHHHHHHH-H--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444432 23455655444433332 2 23577789999988877544 4467777888888999999999999
Q ss_pred HHHHCCCCCC
Q 010057 126 EMKLKECYPT 135 (519)
Q Consensus 126 ~m~~~~~~p~ 135 (519)
.-.+.+-.|-
T Consensus 175 ~Gi~~~A~P~ 184 (223)
T 4aez_C 175 KGKRMKAKPF 184 (223)
T ss_dssp HHHHHTCBSH
T ss_pred HHHHcCCccH
Confidence 8887755553
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.41 E-value=77 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=30.5
Q ss_pred cchHHHHhhhCCcCCCCch------hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010057 411 PVPAAKIFSLLPEDQKCTA------TYTALIGVYFSAGSADKALKIYKTMCRK 457 (519)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 457 (519)
++.|..+|+.+....+... .=...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4567777777766543211 1233556788999999999999986554
No 316
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=38.95 E-value=3.4e+02 Score=27.93 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=17.9
Q ss_pred hhhHHhhhccC--ChhHHHHHHHhCCCCCCHHHHHHHHh
Q 010057 5 ISNVYKILKYS--TWDSAQDLLKNLPIKWDSYTVNQVLK 41 (519)
Q Consensus 5 ~~~i~~~~~~~--~~~~a~~~~~~~~~~p~~~~~~~ll~ 41 (519)
+..+..+++.| .+..++.+.+.+....+...|..++.
T Consensus 595 i~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~ 633 (897)
T 2xdt_A 595 INNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLN 633 (897)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHGGGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 33344444554 34455555554444445555554443
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.71 E-value=1.5e+02 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLMEY 180 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 180 (519)
-.+.+.|+-.+.+|++.| .|....-..++.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~A 57 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIG 57 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 456666666666666666 4443333333333
No 318
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.78 E-value=80 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 153 KEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 153 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444443344444444444444444
No 319
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.46 E-value=1.5e+02 Score=23.27 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 010057 63 NHDRFTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAY 142 (519)
Q Consensus 63 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 142 (519)
.+|...-...+..+.+.+..+....+.+.+ + .++..+-...+.++.+.|+.+....+. .+.. .++...-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHH
Confidence 455555555566666666544444444333 2 246666666667777777654433333 3332 2466666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010057 143 MKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET 222 (519)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 222 (519)
+.++.+.++.+ +...+.++.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+.
T Consensus 97 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 97 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 67777766654 3333444443 356666666777777776643 3333333333 35666777777777777764
Q ss_pred HHHHHHHHHHH
Q 010057 223 RTIILILRYMK 233 (519)
Q Consensus 223 ~~a~~~~~~~~ 233 (519)
+ +...+..+.
T Consensus 169 ~-~~~~L~~~l 178 (201)
T 3ltj_A 169 R-VRAAMEKLA 178 (201)
T ss_dssp H-HHHHHHHHH
T ss_pred h-HHHHHHHHH
Confidence 4 344444443
No 320
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.71 E-value=1.7e+02 Score=23.65 Aligned_cols=184 Identities=8% Similarity=-0.011 Sum_probs=92.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH---HHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH--HHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSA---VISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA--YLALIG 368 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 368 (519)
...+...+..|+.+.+..+++.+...+..++.. -.+.+. ..+..|+.+ +++.+.+.|..++... -.+.+.
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVITTLPS----VVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHH
Confidence 456777888899999988888777766555432 233333 334556554 4555556665554322 122334
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCc---cchhHHHHHHHHhcCCCcchHHHHhhhCCcC-CCC-chhHHHHHHHHHhcCC
Q 010057 369 ILIKLNTFPKVAEIVEEMTKAGHSL---GVYLGALLIHRLGSARRPVPAAKIFSLLPED-QKC-TATYTALIGVYFSAGS 443 (519)
Q Consensus 369 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~li~~~~~~g~ 443 (519)
..+..|+.+-+..+++.....+..+ +..-.+ .+...+..|+.+-+..+++.-... ..+ ..-.+.+ ...++.|+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~ 162 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL-IHAVENNS 162 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH-HHHHHcCC
Confidence 4455676655444444332111111 111112 233334556666666666543321 112 1222333 33345666
Q ss_pred HHHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCChhHHHHHHHH
Q 010057 444 ADKALKIYKTMCRKGIHPSLGTF--NVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 444 ~~~A~~~~~~m~~~g~~p~~~t~--~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
.+ +.+.+.+.|..++.... .+.+......|..+-+..+++.
T Consensus 163 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 163 LS----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred HH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 54 44445556766654321 1233344556777666666653
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.63 E-value=1.6e+02 Score=23.91 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 010057 83 SSMKYVFELMQEKGINIDAV-------TYTSVMHWLSNAGDVDGAVNIWEEMKLK 130 (519)
Q Consensus 83 ~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 130 (519)
+.|..+|+.+.+.-..++.. .-...+..|.+.|.+++|.++|++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 56777887777653221211 1123345667778888888888777654
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.36 E-value=96 Score=23.38 Aligned_cols=10 Identities=40% Similarity=0.890 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010057 155 ATDVYKEMIQ 164 (519)
Q Consensus 155 a~~~~~~m~~ 164 (519)
|.++++.+.+
T Consensus 36 a~ei~~~l~~ 45 (150)
T 2w57_A 36 AEELYKKLID 45 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.15 E-value=76 Score=23.21 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDV 117 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 117 (519)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34455555556667777777777666556666666666666666543
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.85 E-value=39 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010057 118 DGAVNIWEEMKLKECYPTIVSYTAYMKIL 146 (519)
Q Consensus 118 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 146 (519)
++|.+.|.+|.+..-.+...||.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543334556666666655
No 325
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.34 E-value=79 Score=25.82 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhCCCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhcCCCc
Q 010057 342 DGALLAFEYSVKMDLNLERTA-YLALIGILIKLNTFPKVAEIVEEMTKAGHSL 393 (519)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (519)
+.+.++|..|...|+--.... |......+...|++.+|.++|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455566666666655443333 5555556666666666666666666655555
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.27 E-value=1.6e+02 Score=25.97 Aligned_cols=94 Identities=7% Similarity=0.009 Sum_probs=50.4
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccC-ChhhHHHHHHHHHhCCCCcCHHH---HHHHHH
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHR-RRDGALLAFEYSVKMDLNLERTA---YLALIG 368 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~ 368 (519)
...++..|...||.++|...++++...... ...+...+..++-+.. ..+.+..++..+.+.++-+.... |..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 356888999999999999999988533221 1222333333332221 23456677777776664333222 333333
Q ss_pred HHHhcC-CcchHHHHHHHHH
Q 010057 369 ILIKLN-TFPKVAEIVEEMT 387 (519)
Q Consensus 369 ~~~~~~-~~~~a~~~~~~~~ 387 (519)
.+-... |...|...+..+.
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHH
T ss_pred hChHhhcCccchHHHHHHHH
Confidence 333222 4445555555554
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.08 E-value=93 Score=20.23 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=27.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 59 SRGFNHDRFTYTTMLDIFGEAK-RISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 59 ~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
..|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 10 ~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 10 KAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444433 23334443333 344555566555555444455555555555555443
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.67 E-value=1.5e+02 Score=22.36 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcC
Q 010057 197 MQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKENRLALRYPVFKEALQTFKVAD 255 (519)
Q Consensus 197 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 255 (519)
+.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|+-..|..+...+
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4445554332 223344444445555566666666665555555555555555555444
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.43 E-value=1.8e+02 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 010057 149 NDRVKEATDVYKEMIQRGLPPN 170 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~ 170 (519)
-.+.+.|+-.+.+|++.|-.|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3555666666666665554443
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.42 E-value=1.2e+02 Score=22.33 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 162 MIQRGLPPNCYTYTVLMEYLVRAG-KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 162 m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-..
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 455666655432 33444444454 56677777777777665666666666667777776643
No 331
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=34.42 E-value=3.5e+02 Score=27.28 Aligned_cols=47 Identities=2% Similarity=-0.019 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010057 169 PNCYTYTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCC 217 (519)
Q Consensus 169 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 217 (519)
.+..--..++.+++...+.+...++++.... +.. ...-...++.+..
T Consensus 647 ~~~~~~~~~l~al~~~~~~~~~~~~l~~~~~-~~i-~~qd~~~~~~~~~ 693 (780)
T 1z5h_A 647 DRDEDRVRIISAFGKLKSNTDLSTVYGMVEK-TEI-KKQDMISFFSSAL 693 (780)
T ss_dssp CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-TSS-CHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHhc-CCC-CHHHHHHHHHHHH
Confidence 4555667778888888888888888887776 322 2333344444443
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.33 E-value=1.6e+02 Score=25.98 Aligned_cols=25 Identities=0% Similarity=0.066 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQ 93 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~ 93 (519)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3556777777778877777777765
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.22 E-value=1.1e+02 Score=23.40 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcC
Q 010057 142 YMKILFLNDRVKEATDVYKEMIQR--GLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~ 185 (519)
++..+...+..-.|.++++.+.+. +...+..|..--++.+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555555444 33444444444444444444
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.99 E-value=97 Score=20.13 Aligned_cols=58 Identities=5% Similarity=0.060 Sum_probs=27.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010057 92 MQEKGINIDAVTYTSVMHWLSNAG-DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLND 150 (519)
Q Consensus 92 m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 150 (519)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555544432 33344444433 44555566666655543334444444444444433
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.44 E-value=73 Score=23.67 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010057 71 TMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGD 116 (519)
Q Consensus 71 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 116 (519)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444545555666666666666555555555555555555554
No 336
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=32.15 E-value=18 Score=17.24 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=14.4
Q ss_pred cccccchHHHHhhhhccCCC
Q 010057 498 SKDAVPMEEKICDLLYGGDG 517 (519)
Q Consensus 498 ~~~~~~~~~~i~~~~~~~~~ 517 (519)
.+|..+-..-++.+|++|.+
T Consensus 3 ~qDaaakhkqLSeLLR~g~~ 22 (26)
T 1rdt_E 3 VPDAASKHKQLSELLRGGSG 22 (26)
T ss_pred hhhHHHHHHHHHHHHcCCCC
Confidence 35555667778888888875
No 337
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=32.14 E-value=1.7e+02 Score=22.38 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=12.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHH
Q 010057 463 LGTFNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 463 ~~t~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
..++.-+...+.+....-+....++
T Consensus 156 ~i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 156 IVTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp EECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred cEeHHHHHHHHhcChHHHHHHHHhh
Confidence 4555555555555444444444443
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.98 E-value=1.8e+02 Score=26.00 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=39.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCC--hhhHHHHHHHHHhCCCCc
Q 010057 293 DQGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRR--RDGALLAFEYSVKMDLNL 358 (519)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~ 358 (519)
...++..|...+|..+|...++++..... -.......++......++ .+.+-.++..+...++-+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~-~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKH-FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 35688899999999999999999853210 012233333333333332 345557777777766533
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.26 E-value=1.6e+02 Score=23.57 Aligned_cols=85 Identities=5% Similarity=-0.074 Sum_probs=44.6
Q ss_pred HHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------CcccHHHHHHH
Q 010057 403 HRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKALKIYKTMCRKGIHP---------SLGTFNVLLAG 472 (519)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~t~~~l~~~ 472 (519)
...+..|+.+-+..+++.-... ..|..-.+. +...+..|+.+-+..+++.+.+.|..+ |..-.+. +..
T Consensus 126 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~ 203 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTV-LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKL 203 (232)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHH
Confidence 3334456666555555532211 112222222 333456778877777788888877543 2223333 334
Q ss_pred HHhcCChhHHHHHHHHh
Q 010057 473 LEKLGRVSDAEIYRKEK 489 (519)
Q Consensus 473 ~~~~g~~~~a~~~~~~~ 489 (519)
..+.|..+-+..+++.-
T Consensus 204 A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 204 AGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcC
Confidence 45567777666666643
No 340
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=31.25 E-value=4.7e+02 Score=27.22 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=19.4
Q ss_pred hhhhHHhhhccC--ChhHHHHHHHhCCCCCCHHHHHHHHh
Q 010057 4 TISNVYKILKYS--TWDSAQDLLKNLPIKWDSYTVNQVLK 41 (519)
Q Consensus 4 ~~~~i~~~~~~~--~~~~a~~~~~~~~~~p~~~~~~~ll~ 41 (519)
++..+..+++.| .++.++.+.+-+....+...|..++.
T Consensus 662 li~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~~a~~ 701 (967)
T 3se6_A 662 LIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLS 701 (967)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHTTGGGTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 344445555555 34455555555544445555555544
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.14 E-value=1.5e+02 Score=23.70 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=83.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHH---HHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT---AYLALIGIL 370 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~ 370 (519)
+..+...+..|+.+....++..-......++....+.+.. .+..|+.+ +++.+.+.|..++.. .++.+ ...
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A 80 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIA 80 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHH
Confidence 3456677788888888888876432211122222223332 34455544 444455555544332 22233 333
Q ss_pred HhcCCcchHHHHHHHHHhcCCCccchh--HHHHHHHHhcCCCcchHHHHhhhCCcC-CCCchhHHHHHHHHHhcCCHHHH
Q 010057 371 IKLNTFPKVAEIVEEMTKAGHSLGVYL--GALLIHRLGSARRPVPAAKIFSLLPED-QKCTATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 447 (519)
+..|+.+ +.+.+.+.|..++... ....+...+..|+.+-+..+++.-... ..+..-.+.+.. .+..|+.+
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~-- 153 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHR-AAAKGNLK-- 153 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHHTCHH--
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHH-HHHcCCHH--
Confidence 4456554 4555555565443211 112233344556666666666532221 112222223333 33456654
Q ss_pred HHHHHHHHHCCCCCCccc--HHHHHHHHHhcCChhHHHHHHHH
Q 010057 448 LKIYKTMCRKGIHPSLGT--FNVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 448 ~~~~~~m~~~g~~p~~~t--~~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
+.+.+.+.|..++... -.+.+......|..+-+..+++.
T Consensus 154 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 154 --MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp --HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 3444445665554321 11233344566777666666553
No 342
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.30 E-value=2.2e+02 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010057 149 NDRVKEATDVYKEMIQRGLPPNCYTYTVLM 178 (519)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 178 (519)
-.+.+.|+-.+.+|++.|-.|....-..++
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi 77 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLI 77 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455666666666666655444433333333
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.99 E-value=1.4e+02 Score=22.41 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010057 160 KEMIQRGLPPNCYTYTVLMEYLVRAG-KYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGETR 223 (519)
Q Consensus 160 ~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 223 (519)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-..
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34666777766543 34445555555 66778888888888776667776666677888888754
No 344
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.56 E-value=1.4e+02 Score=20.45 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010057 84 SMKYVFELMQEKGINIDAVTYTSVMHWLSNAG 115 (519)
Q Consensus 84 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 115 (519)
.+.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34455555555555555555555555555444
No 345
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.56 E-value=1.5e+02 Score=20.27 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010057 116 DVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDRVKEA 155 (519)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 155 (519)
..+.|.++++.+..+| ..+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4566666666666553 34566666666555554433
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.08 E-value=1.2e+02 Score=22.44 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=27.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCc
Q 010057 331 IIEVNCDHRRRDGALLAFEYSVKMDLNLERTAYLALIGILIKLNTF 376 (519)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 376 (519)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4444444555666777777777666666666654555555555543
No 347
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.88 E-value=55 Score=25.78 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=9.6
Q ss_pred HhhhccCChhHHHHHHHhC
Q 010057 9 YKILKYSTWDSAQDLLKNL 27 (519)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~~ 27 (519)
...+..|+.+.+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCT
T ss_pred HHHHHhccHHHHHHHHHcC
Confidence 3344555555555555543
No 348
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.76 E-value=2.2e+02 Score=21.87 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=28.0
Q ss_pred CChhHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCChhhHHHHHHHHHH
Q 010057 80 KRISSMKYVFELMQEKGINI--DAVTYTSVMH------WLSNAGDVDGAVNIWEEMKL 129 (519)
Q Consensus 80 ~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~ 129 (519)
|++-++.++|+..=+....+ ....|..||+ .+.+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665544344 3445555555 22345666666666665543
No 349
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.43 E-value=2.1e+02 Score=22.87 Aligned_cols=53 Identities=6% Similarity=0.018 Sum_probs=25.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010057 179 EYLVRAGKYEEALEIFSKMQEAGVQP---------DKAACNILIEKCCKAGETRTIILILRYM 232 (519)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 232 (519)
...+..|+.+-+..+++.+.+.|..+ |..-.+ -+...++.|+.+-+..+++.-
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcC
Confidence 33345556665555555555554322 222222 233444566666555555443
No 350
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.72 E-value=1.7e+02 Score=20.18 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 010057 155 ATDVYKEMIQRGLPPNCYTYTVLMEYLVRAG 185 (519)
Q Consensus 155 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 185 (519)
|.++.++...-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444455555555555555555555554444
No 351
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.59 E-value=3.6e+02 Score=24.05 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQ 93 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~ 93 (519)
...+|.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4566666666666666666666664
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.43 E-value=1.4e+02 Score=21.76 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=18.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010057 107 VMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFL 148 (519)
Q Consensus 107 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 148 (519)
++..+...+..-.|.++++.+.+.+...+..|.--.++.+..
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 333444444445555555555554433344443333333333
No 353
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=25.27 E-value=3.3e+02 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=15.0
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 010057 21 QDLLKNLPIKWDSYTVNQVL 40 (519)
Q Consensus 21 ~~~~~~~~~~p~~~~~~~ll 40 (519)
.++|++.|..|+-..||+++
T Consensus 83 e~V~~~VG~EPSG~~FNSi~ 102 (310)
T 1u60_A 83 QAVQDKIGADPTGLPFNSVI 102 (310)
T ss_dssp HHHHHHTCSCCCSSCTTCHH
T ss_pred HHHHHHhCCCCCCCCCcchh
Confidence 46777778888887777764
No 354
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.03 E-value=3.5e+02 Score=23.40 Aligned_cols=188 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010057 67 FTYTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKIL 146 (519)
Q Consensus 67 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 146 (519)
.....+|.-|...|+.++|...++++......|.......-+..=.+...-+.+-.++..+.. ++-+.......+...+
T Consensus 4 k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Q ss_pred HhcCC--------HHHHHHHHHHHHHCCCCCCHHH---------------------------------------------
Q 010057 147 FLNDR--------VKEATDVYKEMIQRGLPPNCYT--------------------------------------------- 173 (519)
Q Consensus 147 ~~~~~--------~~~a~~~~~~m~~~g~~p~~~~--------------------------------------------- 173 (519)
....+ ++..-.++......|+-|-...
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ 162 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSV 162 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCH
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCH
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCccCHHHHH
Q 010057 174 ------YTVLMEYLVRAGKYEEALEIFSKMQEAGVQPDKAACNILIEKCCKAGET--RTIILILRYMKENRLALRYPVFK 245 (519)
Q Consensus 174 ------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~ 245 (519)
...++.-|...|+.++|.+.++++..-... ...+..++..+.-+.++. +.+..++..+.+.++.+......
T Consensus 163 eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 163 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_pred HHHHHHhhcCc
Q 010057 246 EALQTFKVADE 256 (519)
Q Consensus 246 ~~l~~~~~~~~ 256 (519)
...+.+....+
T Consensus 242 Gf~~vl~~l~D 252 (307)
T 2zu6_B 242 GYERIYNEIPD 252 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccH
No 355
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.33 E-value=80 Score=23.76 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=7.8
Q ss_pred HHHHHhcCChHHHHHH
Q 010057 213 IEKCCKAGETRTIILI 228 (519)
Q Consensus 213 i~~~~~~g~~~~a~~~ 228 (519)
+...+..|+.+-+..+
T Consensus 112 L~~A~~~~~~~~v~~L 127 (165)
T 3twr_A 112 LHEAAAKGKYEICKLL 127 (165)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3344456665544433
No 356
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.93 E-value=2.6e+02 Score=22.92 Aligned_cols=52 Identities=12% Similarity=-0.041 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc----------------HHHHHHHHHhcCChhHHHHHHH
Q 010057 431 YTALIGVYFSAGSADKALKIYKTMCRKGIHPSLGT----------------FNVLLAGLEKLGRVSDAEIYRK 487 (519)
Q Consensus 431 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------~~~l~~~~~~~g~~~~a~~~~~ 487 (519)
++.|..|. ..|+.+ +.+.+.+.|..++... -.+.+...+..|..+-+..+++
T Consensus 94 ~t~L~~A~-~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 94 QTALHIAI-ERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp BCHHHHHH-HTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHH-HcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 34444443 456654 4444555676665442 2233444456677777766665
No 357
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.86 E-value=1.2e+02 Score=17.66 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 010057 442 GSADKALKIYKTMCRKGIHPSLGTFNVLLAGLEKLGRVSDAEIYRKE 488 (519)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~~t~~~l~~~~~~~g~~~~a~~~~~~ 488 (519)
.+...|+++++++.+.|--|+.. +..+-. -.++.......++|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~K-L~aLq~-VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAK-LASLQQ-VLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHH-HHHHHH-HHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHH-HHHHHH-HHHHHHHHHHHHHHHH
Confidence 36678999999998888655433 222222 2233334444555543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.59 E-value=4e+02 Score=27.64 Aligned_cols=48 Identities=8% Similarity=-0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcC
Q 010057 103 TYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTI----VSYTAYMKILFLND 150 (519)
Q Consensus 103 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~ 150 (519)
-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788999999999999998888877654211122 35667777665543
No 359
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.51 E-value=3e+02 Score=26.28 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010057 138 SYTAYMKILFLNDRVKEATDVYKEMIQRGLPPNCYTYTVLMEYLVRAGKYEEA 190 (519)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 190 (519)
--.-++..|++.|-.+.|.++++.+-..-+. +...| .-+..|+++|+++.+
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3445555666666666666666655543222 33334 344455666655543
No 360
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.46 E-value=2.7e+02 Score=21.56 Aligned_cols=94 Identities=6% Similarity=0.026 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc-c-HHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH---HHHHHHHHH
Q 010057 297 VLILLKKKNLVAIDSLLSGIMDKSIQL-D-SAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA---YLALIGILI 371 (519)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 371 (519)
+...++.|+++....++.. ++.. + ..-.+ .+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.
T Consensus 10 l~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEK----GYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHH----SSSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc----CcccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 4455677888776665543 2221 1 11223 33444566676666777788888877665432 233333322
Q ss_pred hc-CCcchHHHHHHHHHhcCCCccc
Q 010057 372 KL-NTFPKVAEIVEEMTKAGHSLGV 395 (519)
Q Consensus 372 ~~-~~~~~a~~~~~~~~~~~~~~~~ 395 (519)
.. .+.....++.+.+++.|..++.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCc
Confidence 21 2233445667777777765543
No 361
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.28 E-value=3.9e+02 Score=23.30 Aligned_cols=29 Identities=7% Similarity=-0.089 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010057 430 TYTALIGVYFSAGSADKALKIYKTMCRKG 458 (519)
Q Consensus 430 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 458 (519)
+...-+....+.+++..|..+-+++++.+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 55667777889999999999999999885
No 362
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.00 E-value=62 Score=23.27 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010057 46 MEKAWLFFNWVSRSRGFNHDRFTYTTMLDIFGEAKRISSMKYVFELMQE-KGINIDAVTYTSVMHWLSNAGDVDGAVNIW 124 (519)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 124 (519)
+.+|+.-++.... . ++|......++..+-.. ++.++++.....+ .|+ .+.++...++...+.|-.+.. +.|
T Consensus 4 ~~~al~~L~e~~~-~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 4 LARAVERLKAALE-R--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp HHHHHHHHHHHHS-S--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 4455555555532 1 34544455555443221 3344444433332 344 244556666666666655444 444
Q ss_pred HHHH
Q 010057 125 EEMK 128 (519)
Q Consensus 125 ~~m~ 128 (519)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 363
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.00 E-value=1.5e+02 Score=18.58 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010057 69 YTTMLDIFGEAKRISSMKYVFELMQEKGINIDAVTYTSVMHWLSNA 114 (519)
Q Consensus 69 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 114 (519)
++.++..++...-.+.+...+++..+.|.- +..+|-.-++..++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 455566666666666666666666666643 556665555555543
No 364
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.71 E-value=1.6e+02 Score=21.21 Aligned_cols=41 Identities=7% Similarity=-0.169 Sum_probs=21.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010057 194 FSKMQEAGVQPDKAACNILIEKCCKAGETRTIILILRYMKE 234 (519)
Q Consensus 194 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 234 (519)
|+.+.+..+.|+...-..-+..+...++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444544433333333444556777777777666655
No 365
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.16 E-value=2.2e+02 Score=21.85 Aligned_cols=94 Identities=9% Similarity=0.138 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHHH--HHHHHHHHH
Q 010057 294 QGLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERTA--YLALIGILI 371 (519)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 371 (519)
..++..|...+|.+++...++++......|.......-...=.+...-+.+-.++..+...-+.++... |..++..+-
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i~~Gf~~lle~ld 93 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLP 93 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCh
Q ss_pred hcC-CcchHHHHHHHHH
Q 010057 372 KLN-TFPKVAEIVEEMT 387 (519)
Q Consensus 372 ~~~-~~~~a~~~~~~~~ 387 (519)
... |.-.|.+++..+.
T Consensus 94 Dl~iDiP~a~~~la~fi 110 (165)
T 2rg8_A 94 ELALDTPRAPQLVGQFI 110 (165)
T ss_dssp HHHHHCTTHHHHHHHHH
T ss_pred hhcccccchHHHHHHHH
No 366
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.13 E-value=2e+02 Score=19.35 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010057 86 KYVFELMQEKGINIDAVTYTSVMHWLSNAGDVDGAVNIWEEMKLKECYPTIVSYTAYMKILFLNDR 151 (519)
Q Consensus 86 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 151 (519)
..+++.+.+.|+- +..-+..+-. .....++|..+++.+.++ ...+|..++.++.+.+.
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCH
Confidence 3455555555443 3333333322 234555666666665544 34555555555555544
No 367
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.82 E-value=2.9e+02 Score=21.18 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHHHcCCHHHHHHHHHHHH
Q 010057 150 DRVKEATDVYKEMIQRGLPP--NCYTYTVLME------YLVRAGKYEEALEIFSKMQ 198 (519)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~------~~~~~~~~~~a~~~~~~m~ 198 (519)
|++-+|.+++++.=...-.+ +...|..||. ...+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655443333 3334444444 1223455555555555544
No 368
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=20.71 E-value=2.6e+02 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 010057 295 GLVLILLKKKNLVAIDSLLS 314 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~ 314 (519)
..+...+..|+.+....+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 44555566666655554444
No 369
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.43 E-value=1.3e+02 Score=24.80 Aligned_cols=54 Identities=7% Similarity=-0.104 Sum_probs=27.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc---CChhhHHHHHHHHH
Q 010057 74 DIFGEAKRISSMKYVFELMQEKGINIDA-------VTYTSVMHWLSNA---GDVDGAVNIWEEMK 128 (519)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m~ 128 (519)
...++.|+.+.+..+++.+.+.|..++. .-++.| ...+.. |+.+-+..+++.-.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCC
Confidence 3345567777666666666665554332 222223 333334 66665655555443
No 370
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.05 E-value=3.9e+02 Score=22.40 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhccCChhhHHHHHHHHHhCCCCcCHH---HHHHHHHHHH
Q 010057 295 GLVLILLKKKNLVAIDSLLSGIMDKSIQLDSAVISTIIEVNCDHRRRDGALLAFEYSVKMDLNLERT---AYLALIGILI 371 (519)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 371 (519)
..+...+..|+.+-+..+++. |..++..--.+.+...+..|+.+-+ +.+.+.|..++.. -.+.+ ...+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L-~~A~ 103 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTAL-YYAV 103 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHH-HHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHH-HHHH
Confidence 456666677777766666654 2222211111223334555665433 3444455444322 12223 2334
Q ss_pred hcCCcchHHHHHHHHHhcCCCccch---hHHHHHHHHhcCCCcchHHHHhhhCCcCCCCc-hhHHHHHHHHHhcCCHHHH
Q 010057 372 KLNTFPKVAEIVEEMTKAGHSLGVY---LGALLIHRLGSARRPVPAAKIFSLLPEDQKCT-ATYTALIGVYFSAGSADKA 447 (519)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 447 (519)
..|+.+- .+.+.+.|..++.. -+...+...+..|+.+-+..+++.-... .+. .-++.| ...+..|+.+-+
T Consensus 104 ~~g~~~~----v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~g~t~L-~~A~~~g~~~~v 177 (285)
T 3kea_A 104 DSGNMQT----VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCI-HITIKNGHVDMM 177 (285)
T ss_dssp HTTCHHH----HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-CCCSTHHHHH-HHHHHTTCHHHH
T ss_pred HcCCHHH----HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-ccccCCccHH-HHHHHcChHHHH
Confidence 4565543 33444445433321 1122334444566666555555543322 222 233333 333456666555
Q ss_pred HHHHHH
Q 010057 448 LKIYKT 453 (519)
Q Consensus 448 ~~~~~~ 453 (519)
.-+++.
T Consensus 178 ~~Ll~~ 183 (285)
T 3kea_A 178 ILLLDY 183 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 555544
Done!