RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010058
(519 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 529 bits (1363), Expect = 0.0
Identities = 273/463 (58%), Positives = 346/463 (74%), Gaps = 2/463 (0%)
Query: 51 NQLNAPLEEIDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG 110
L PL++ D E+ DII+ E RQ GLELI SENF S +V++A+GS + NKYS GYPG
Sbjct: 6 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPG 65
Query: 111 ARYYGGNEYIDMAESLCQKRALDAFQLDPAKWGVNVQSLSGSPANFQVYTALLKPHERIM 170
RYYGG E+ID E+LCQKRAL A+ LDP WGVNVQ SGSPANF VYTAL++PH RIM
Sbjct: 66 QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIM 125
Query: 171 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIV 230
LDLP GGHL+HG+ TD KKISA SIFFE+M Y+++ TGYIDY++LE++A LF PKLI+
Sbjct: 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 185
Query: 231 AGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 290
AG S Y+R DY R+RK+ D+ A ++ADMAHISGLV AGV+PSPFE+ VVTTTTHK+L
Sbjct: 186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 245
Query: 291 RGPRGAMIFFRKGVKEIN-KQGQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALKQV 349
RG R MIF+R+GV+ ++ K G+E++Y E IN AVFPGLQGGPHNH I+G+AVALKQ
Sbjct: 246 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 305
Query: 350 KTPEYKAYQEQVLSNSSKFARSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLES 409
TPE+K YQ QV++N + +L+E GY +V+GG++NHL+LV+LR+KG DG R EKVLE+
Sbjct: 306 MTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEA 365
Query: 410 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFDAAVKLALKIKGDT 469
IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF+KVA F ++L ++I+ DT
Sbjct: 366 CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDT 425
Query: 470 -KGTKLKDFVATLMSDESIQSEISNLRDKVEEYAKRFPTVGFE 511
LK+F L DE Q + LR +VE +A FP G
Sbjct: 426 GPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLP 468
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 511 bits (1317), Expect = e-180
Identities = 282/460 (61%), Positives = 358/460 (77%), Gaps = 3/460 (0%)
Query: 54 NAPLEEIDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 113
L + DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RY
Sbjct: 5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRY 64
Query: 114 YGGNEYIDMAESLCQKRALDAFQLDPAKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 173
YGG E +D E LCQ+RAL+AF LDPA+WGVNVQ SGSPAN VYTALL+PH+RIM LD
Sbjct: 65 YGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLD 124
Query: 174 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIVAGA 233
LP GGHL+HGY +D K+ISA SIFFE+MPY+L+ TG IDY QL +A LFRP+LI+AG
Sbjct: 125 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 184
Query: 234 SAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 293
SAYARL DYAR+R+VCD+ KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG
Sbjct: 185 SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 244
Query: 294 RGAMIFFRKGVKEINKQ-GQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALKQVKTP 352
R +IF+RKGVK ++ + G+E+ Y +ED+IN AVFP LQGGPHNH I+ +AVALKQ TP
Sbjct: 245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 304
Query: 353 EYKAYQEQVLSNSSKFARSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHI 412
++ Y QVL N+ A +LLERGY LVSGGT+NHLVLV+LR KG+DG+R E+VLE V I
Sbjct: 305 MFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSI 364
Query: 413 AANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFDAAVKLALKIKGDTKGT 472
ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V +F D V + L++K +K
Sbjct: 365 TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVK--SKTA 422
Query: 473 KLKDFVATLMSDESIQSEISNLRDKVEEYAKRFPTVGFEK 512
KL+DF + L+ D ++NLR +VE++A+ FP GF++
Sbjct: 423 KLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 462
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 443 bits (1140), Expect = e-154
Identities = 195/451 (43%), Positives = 269/451 (59%), Gaps = 45/451 (9%)
Query: 57 LEEIDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 116
+ + D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RYYGG
Sbjct: 7 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGG 66
Query: 117 NEYIDMAESLCQKRALDAFQLDPAKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPH 176
EY+D+ E L RA + F D A Q SGS ANF VYTALL+P + ++ ++L H
Sbjct: 67 CEYVDIVEQLAIDRAKELFGADYANV----QPHSGSQANFAVYTALLEPGDTVLGMNLAH 122
Query: 177 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIVAGASAY 236
GGHL+HG ++ + +PY +D TG+IDY LEK A +PK+I+ G SAY
Sbjct: 123 GGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAY 176
Query: 237 ARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 296
+ + D+A++R++ D A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG
Sbjct: 177 SGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 236
Query: 297 MIFFRKGVKEINKQGQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKA 356
+I + G +E+ K K+N AVFPG QGGP H I+G AVALK+ PE+K
Sbjct: 237 LILAKGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKT 285
Query: 357 YQEQVLSNSSKFARSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANK 416
YQ+QV N+ LERGY +VSGGT+NHL LV+L +K + G + L +I NK
Sbjct: 286 YQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNK 345
Query: 417 NTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFDAAVKLALKIKGDTKGTKLK 475
N+VP D S V GIR+GTPA+T RGF E + +++A + +
Sbjct: 346 NSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD--------------- 390
Query: 476 DFVATLMSDESIQSEISNLRDKVEEYAKRFP 506
+ ++ I ++ KV + R+P
Sbjct: 391 --------SINDEAVIERIKGKVLDICARYP 413
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 439 bits (1130), Expect = e-152
Identities = 182/426 (42%), Positives = 262/426 (61%), Gaps = 27/426 (6%)
Query: 57 LEEIDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 116
L + DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 117 NEYIDMAESLCQKRALDAFQLDPAKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPH 176
EY+D+ E L ++RA F + A Q SG+ AN VY +L+ + ++ ++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANV----QPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 177 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIVAGASAY 236
GGHL+HG ++ + + + Y +D T IDY+ + + A L RPKLIVA ASAY
Sbjct: 120 GGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 237 ARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 296
R+ D+A+ R++ D+ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 297 MIFFRKGVKEINKQGQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKA 356
MI + +I++A+FPG+QGGP H I+ AVA + ++KA
Sbjct: 235 MILC--------------QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKA 280
Query: 357 YQEQVLSNSSKFARSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANK 416
Y ++V+ N+ + A +L G+ LVSGGT+NHL+LV+LR + + G EKVL+ V I NK
Sbjct: 281 YAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNK 340
Query: 417 NTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFEKVAEFFDAAVKLALKIKGDTKGTKLK 475
NT+P D S V GIR+GT A+T+RGF E+ +++A +K + + + +
Sbjct: 341 NTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK---NVGSEQALEEAR 397
Query: 476 DFVATL 481
VA L
Sbjct: 398 QRVAAL 403
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 168 bits (427), Expect = 2e-47
Identities = 55/432 (12%), Positives = 116/432 (26%), Gaps = 67/432 (15%)
Query: 97 GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALDAFQLDPAKWGVNVQSLSGSPANF 156
G+V + + G + G+ + + F + + G A
Sbjct: 53 GAVTQSMQAAMMRGDEAFSGSRSYYALA----ESVKNIFGYQYT-----IPTHQGRGAEQ 103
Query: 157 QVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVS--------IFFETMPYRLDES 208
L+K E+ LD S+ + T+ S ++ I +
Sbjct: 104 IYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDF 163
Query: 209 TGYIDYEQLEKSAALFRPKLIV---------AGASAYARLYDYARIRKVCDKQKAVMLAD 259
G D E LE+ P + + L + + + K ++ D
Sbjct: 164 KGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223
Query: 260 MAHISGLVAAGVIPSP--------------FEYADVVTTTTHKSLRGPRGAMIFFRKGVK 305
A + ++YAD++ + K P G ++ +
Sbjct: 224 SARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD-- 281
Query: 306 EINKQGQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEY--KAYQEQVLS 363
+ + + +G P + G A+ V + + ++
Sbjct: 282 ---------SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIA 332
Query: 364 NSSKFARSLLERGYDLVSGG-----TENHLVLVNLRNKGIDG-SRVEKVLESVHIAANKN 417
L E G G + +L ++ + ++ + I A +
Sbjct: 333 QVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEI 392
Query: 418 TVPGDVSAMVPGGIRMGTP-----ALTSRGFVEEDFEKVAEFFDAAVKLALKIKG---DT 469
G + + + + + E F + A IKG
Sbjct: 393 GSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTY 452
Query: 470 KGTKLKDFVATL 481
+ L+ F A L
Sbjct: 453 EPKVLRHFTAKL 464
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 137 bits (345), Expect = 6e-36
Identities = 55/454 (12%), Positives = 125/454 (27%), Gaps = 81/454 (17%)
Query: 81 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALDAFQ 136
L+PS + S A+ ++ G Y G+ + +A + F
Sbjct: 37 LLPSSAVYIDLLTDSGTNAMSDHQ---WAAMITGDEAYAGSRNYYDLK----DKAKELFN 89
Query: 137 LDPAKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSI 196
D + + G A ++ LLK ++ P H T
Sbjct: 90 YDYI-----IPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCK 144
Query: 197 FFETM------PYRLDESTGYIDYEQLEKSAALFRPKLI---------VAGASAYARLYD 241
+ D+ G D ++L+++ A I + + +
Sbjct: 145 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 204
Query: 242 YARIRKVCDKQKAVMLADMAHISGLVAAG--------------VIPSPFEYADVVTTTTH 287
+ ++ + ++ D A VI ++YAD +T +
Sbjct: 205 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 264
Query: 288 KSLRGPRGAMIFFRKGVKEINKQGQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALK 347
K G ++ R + + + ++G ++G +A
Sbjct: 265 KDPLLNIGGLVAIRDNEEIF-------------TLARQRCVPMEGFVTYGGLAGRDMAAM 311
Query: 348 QVKTPE--YKAYQEQVLSNSSKFARSLLERGYDLVSGGTEN------HLVLVNLRNKGI- 398
E + Y + L E G + + ++ +
Sbjct: 312 VQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFP 371
Query: 399 DGSRVEKVLESVHIAANKNTVP--------GDVSAMVPGGIRMGTPALTSRGFVEEDFEK 450
+ + + + A + G+ +R+ R + + +
Sbjct: 372 AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIAR---RVYTNDHMDY 428
Query: 451 VAEFFDAAVKLALKIKG---DTKGTKLKDFVATL 481
+A+ + +KG + + L+ F A L
Sbjct: 429 IADALIGLKEKFATLKGLEFEYEPPVLRHFTARL 462
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 127 bits (318), Expect = 2e-32
Identities = 48/421 (11%), Positives = 107/421 (25%), Gaps = 53/421 (12%)
Query: 76 WKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY-IDMAESL-------- 126
+K L+ S G K+ G ++G + D+ +
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 127 -------CQKRALDAFQLDPAKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGH 179
+K A + D S AN V +AL+ + ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADKT----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 180 LSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPK----------LI 229
+ + + + D +++ + AA P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 230 VAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIP----------SPFEYA 279
+ + +Y+ + K + D A + ++ P +
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 280 DVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVMYAYEDKINQAVFPGLQGGPHNHTI 339
+V + HK G +K ++ Y N + + P
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHI----KGQLRYCDHKHFNNSFNLFMSTSPFYPMY 295
Query: 340 SGLAVALKQVKTPEYKAYQEQVLSNSSKFARSLLER-------GYDLVSGGTENHLVLVN 392
+ L V + + +L + + + L++ +V+G +
Sbjct: 296 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTED 355
Query: 393 LRNKGIDGSRVEKVLESVHIAANKNTVPGDVS--AMVPGGIRMGTPALTSRGFVEEDFEK 450
+ N + + N D + + GI T G
Sbjct: 356 MANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVAN 415
Query: 451 V 451
Sbjct: 416 Y 416
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 113 bits (284), Expect = 8e-28
Identities = 57/447 (12%), Positives = 119/447 (26%), Gaps = 76/447 (17%)
Query: 81 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALDAFQ 136
L+ S++ + S A+ ++ G Y G+E E K + F
Sbjct: 37 LLNSKDIYIDLLTDSGTNAMSDKQ---WAGMMIGDEAYAGSENFYHLE----KTVKELFG 89
Query: 137 LDPAKWGVNVQSLSGSPANFQVYTALLKPHERIMA---LDLPHGGHLSHGYQTDTKKISA 193
V + G A + +KP + + +G
Sbjct: 90 FKHI-----VPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNG-----ATFVD 139
Query: 194 VSIFFETMPYRLDESTGYIDYEQLEKS---------AALFRPKLIVAGASAYARLYDYAR 244
+ G ID +L A + + + +
Sbjct: 140 IVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRA 199
Query: 245 IRKVCDKQKAVMLADMAHIS--------------GLVAAGVIPSPFEYADVVTTTTHKSL 290
+ ++ + D + ++ F YAD T + K
Sbjct: 200 VHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDC 259
Query: 291 RGPRGAMIFFRKGVKEINKQGQEVMYAYEDKINQAVFPGLQGGPHNHTISGLAVALKQVK 350
G + +E+ A ++ + GG + +A+ L++
Sbjct: 260 LVNIGGFLCMND---------EEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM 310
Query: 351 TPEYKAYQEQVLSNSSKFARSLLERGYDLVSGGTENHLVLVNLR--------NKGIDGSR 402
EY + + L E G +V T H V ++ R ++ S
Sbjct: 311 QYEYIEH---RVKQVRYLGDKLREAGVPIVE-PTGGHAVFLDARRFCPHLTQDQFPAQSL 366
Query: 403 VEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTP-----ALTSRGFVEEDFEKVAEFFDA 457
+ + + + + + G + R + + VA+
Sbjct: 367 AASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426
Query: 458 AVKLALKIKGDT---KGTKLKDFVATL 481
+ I+G T + +L+ F A
Sbjct: 427 LYQHKEDIRGLTFVYEPKQLRFFTARF 453
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 55.2 bits (131), Expect = 8e-09
Identities = 46/381 (12%), Positives = 110/381 (28%), Gaps = 50/381 (13%)
Query: 84 SENFTSVS--VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALDAFQLDPAK 141
S+ T + + +A+ ++ G YG + I+ E + A + F + A
Sbjct: 6 SDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE----RLAAETFGKEAA- 52
Query: 142 WGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 201
SG+ N A + + ++ H G + + +
Sbjct: 53 ---LFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNG 108
Query: 202 PYRLDESTGYIDYEQLE--KSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLAD 259
D+ I + +++ + L + I + + + D
Sbjct: 109 AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 168
Query: 260 MAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVMYAYE 319
+ EYA + +G + G ++ ++ ++
Sbjct: 169 G-ARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKML- 226
Query: 320 DKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFARSLLERGYDL 379
+G+ A + + ++ N+ A L E GY +
Sbjct: 227 --------------GGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSV 272
Query: 380 VSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALT 439
+ ++V++ N ++ + L + + +A+ IR+ T
Sbjct: 273 NPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVL---------ANAVSDTEIRLVTHKDV 323
Query: 440 SRGFVEEDFEKVAEFFDAAVK 460
S D E+ F+ +
Sbjct: 324 S----RNDIEEALNIFEKLFR 340
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 48.0 bits (113), Expect = 2e-06
Identities = 46/410 (11%), Positives = 99/410 (24%), Gaps = 51/410 (12%)
Query: 51 NQLNAPLEEIDPEIADIIELEKA-RQWKGLELIPSENFT---SVSVMQAVGSVMTNKYSE 106
N P ID E +++ + ++
Sbjct: 34 NHRKIPENGIDDE-----KIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGF 88
Query: 107 GYPGARYYGGNEYIDMA------ESLCQKRALDAFQLDPAKWGVNVQSLSGSPANFQVYT 160
+ R + A +L K F+ +S + +
Sbjct: 89 CHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLS 148
Query: 161 ALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKS 220
A K + + + + SH +++ + LD Y+ E +E +
Sbjct: 149 AARKKYGSNVVI----YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENA 202
Query: 221 AALFRPK------LIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPS 274
L D I K+C+ + + A+
Sbjct: 203 IKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK 262
Query: 275 PF--EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVMYAYEDKINQAVFPGLQG 332
D V +++ K+L P G + + + + +I+ +
Sbjct: 263 KAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAE------------FIKEISLSYPGRASA 310
Query: 333 GPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFARSLLERGYDL----------VSG 382
P +T+ L + K + + G +S
Sbjct: 311 TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISV 370
Query: 383 GTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIR 432
++ + L N + G R K + + G+R
Sbjct: 371 NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVR 420
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 41.0 bits (94), Expect = 3e-04
Identities = 48/386 (12%), Positives = 114/386 (29%), Gaps = 36/386 (9%)
Query: 86 NFTSVSVMQAVGSVMT------NKYSEGYPGARYYGGNEYIDMAESLCQKRALDAFQLDP 139
+F ++ +Q G + ++ +GY + + + D
Sbjct: 1 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTG----RLDEIKTPPIHDFIHNQL 56
Query: 140 AKWGVNVQSL----SGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVS 195
K+ + A F V +L K ++ + H +
Sbjct: 57 PKF-LGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPK 115
Query: 196 IFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAV 255
+ + I+ + L LI Y L D +I KVC +
Sbjct: 116 TDYPDYAITPENFAQTIEETKKRGEVVLA---LITYPDGNYGNLPDVKKIAKVCSEYDVP 172
Query: 256 MLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVM 315
+L + A+ G + + ++ + + ++ ++ EI + E
Sbjct: 173 LLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGP--IGVMGMKEEWAEIVLRRSEKY 230
Query: 316 YAYEDKINQAVFPGLQGGPHNHTISGLAVALKQVKTPEYKAYQEQVLSNSSKFARSLLER 375
E ++ L TI L + E ++ + + +FA + +
Sbjct: 231 KNKEVEL-------LGCTARGATIITLMASFPH--VRERIKRWDEEVEKARRFAAEMEKL 281
Query: 376 GYDLVSGGTENH-LVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMG 434
G + NH L+ + + + ++ + G + + ++
Sbjct: 282 GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHG-IKPGLTRYFKLS 340
Query: 435 TPALTSRGFVEEDFEKVAEFFDAAVK 460
T L+ +E+ + V F ++
Sbjct: 341 TYGLS-----DEEVDYVLNAFKEIIE 361
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 32.5 bits (73), Expect = 0.12
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 215 EQLEKSAALFRPKLIVAGASAYARLYDYARIRKVCD---KQKAVMLADMAHISGLVAAGV 271
+L+++ +++A ++ A ++ VCD K A+++ D +H G V
Sbjct: 166 ARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENG 225
Query: 272 IPSPFEY-----ADVVTTTTHKSLRGPRGAMIFFRKGVKE 306
S D++T T K+L G G RK V E
Sbjct: 226 RGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVE 265
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 82
Score = 26.2 bits (58), Expect = 3.1
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 25 GSHYYVYMSSLPDQALNNEKAPAPWINQLNAPLEEID 61
G Y V+ + PD E+ P + ++++
Sbjct: 39 GLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVE 75
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 27.6 bits (61), Expect = 3.7
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 433 MGTPALTSRGFVEEDFEKVAEFFDAAVKLALKIKGDTKGTKLKDFVATLMS--DESIQSE 490
G V++ K + A+ ++ K KG KL+++V L S
Sbjct: 10 FGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSP 69
Query: 491 ISNLRDKVEEYAKRFPTVGFEKETM 515
+ ++ Y +
Sbjct: 70 RYHPTLHIDVYGTIGLIFDMDPVRC 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,884,677
Number of extensions: 87402
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 18
Length of query: 519
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,185,626
Effective search space: 509819180
Effective search space used: 509819180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)