Query 010059
Match_columns 519
No_of_seqs 256 out of 1520
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11031 guanosine pentaphosph 100.0 2E-103 3E-108 844.3 55.0 461 11-516 4-466 (496)
2 PRK10854 exopolyphosphatase; P 100.0 4E-101 8E-106 829.9 54.2 462 12-516 10-475 (513)
3 COG0248 GppA Exopolyphosphatas 100.0 3.7E-94 8E-99 758.4 42.2 448 13-499 3-453 (492)
4 TIGR03706 exo_poly_only exopol 100.0 8.2E-64 1.8E-68 506.4 33.6 295 15-329 2-299 (300)
5 PF02541 Ppx-GppA: Ppx/GppA ph 100.0 2.2E-57 4.8E-62 457.1 28.0 282 28-331 1-284 (285)
6 PRK15080 ethanolamine utilizat 99.7 2.1E-15 4.5E-20 150.4 19.9 155 4-182 15-174 (267)
7 PF01150 GDA1_CD39: GDA1/CD39 99.0 2.2E-09 4.9E-14 114.6 13.1 149 13-162 8-183 (434)
8 TIGR02529 EutJ ethanolamine ut 98.8 5.9E-07 1.3E-11 88.2 19.0 146 18-183 2-148 (239)
9 KOG1386 Nucleoside phosphatase 98.6 2E-07 4.3E-12 97.0 11.2 159 13-174 9-198 (501)
10 KOG1385 Nucleoside phosphatase 98.6 1.6E-07 3.4E-12 95.7 8.5 149 12-163 66-233 (453)
11 PF01966 HD: HD domain; Inter 98.4 5.1E-08 1.1E-12 84.2 0.6 106 361-490 3-121 (122)
12 PRK09472 ftsA cell division pr 98.4 1.2E-05 2.5E-10 85.7 17.9 41 143-183 204-244 (420)
13 TIGR01174 ftsA cell division p 98.2 9.8E-05 2.1E-09 77.4 17.8 161 15-182 2-235 (371)
14 TIGR01175 pilM type IV pilus a 98.1 0.00091 2E-08 69.3 23.4 162 13-182 3-227 (348)
15 COG0849 ftsA Cell division ATP 98.1 7.1E-05 1.5E-09 78.7 14.6 40 144-183 204-243 (418)
16 cd00077 HDc Metal dependent ph 98.0 1.6E-05 3.5E-10 69.4 6.6 112 361-493 5-127 (145)
17 smart00471 HDc Metal dependent 97.9 2.8E-05 6.1E-10 66.3 6.9 101 361-493 7-117 (124)
18 TIGR00295 conserved hypothetic 97.6 0.0003 6.4E-09 65.0 8.7 120 350-490 4-125 (164)
19 PF06723 MreB_Mbl: MreB/Mbl pr 97.5 0.0018 4E-08 66.3 14.1 116 57-181 65-183 (326)
20 TIGR03401 cyanamide_fam HD dom 97.4 0.0016 3.5E-08 63.3 11.3 115 345-490 42-165 (228)
21 PRK10719 eutA reactivating fac 97.3 0.0028 6.1E-08 67.0 13.1 155 14-181 7-184 (475)
22 PF11104 PilM_2: Type IV pilus 97.3 0.0038 8.2E-08 64.6 13.8 40 144-183 181-220 (340)
23 PRK13928 rod shape-determining 97.3 0.0069 1.5E-07 62.5 15.0 117 57-182 67-186 (336)
24 PF06277 EutA: Ethanolamine ut 97.2 0.0078 1.7E-07 63.7 14.0 152 15-175 5-175 (473)
25 PRK13929 rod-share determining 97.0 0.014 3E-07 60.3 14.6 117 57-182 68-189 (335)
26 PRK13930 rod shape-determining 97.0 0.014 3E-07 60.2 13.7 89 90-182 102-191 (335)
27 PRK12703 tRNA 2'-O-methylase; 96.9 0.0045 9.7E-08 63.4 9.3 120 346-492 174-296 (339)
28 COG4972 PilM Tfp pilus assembl 96.8 0.12 2.6E-06 52.2 18.1 71 113-183 160-233 (354)
29 TIGR00904 mreB cell shape dete 96.7 0.031 6.8E-07 57.6 14.0 89 90-182 100-189 (333)
30 TIGR00241 CoA_E_activ CoA-subs 96.7 0.023 4.9E-07 56.1 12.2 130 15-183 2-134 (248)
31 PRK13927 rod shape-determining 96.6 0.042 9.1E-07 56.6 14.3 89 91-183 99-188 (334)
32 TIGR00277 HDIG uncharacterized 96.6 0.0088 1.9E-07 47.3 7.2 67 361-453 7-78 (80)
33 COG3294 HD supefamily hydrolas 96.5 0.0032 7E-08 59.6 4.7 70 357-429 56-127 (269)
34 PRK12704 phosphodiesterase; Pr 96.5 0.023 5E-07 62.0 12.0 93 361-495 338-433 (520)
35 TIGR03319 YmdA_YtgF conserved 96.5 0.012 2.6E-07 64.1 9.5 93 361-495 332-427 (514)
36 PRK12705 hypothetical protein; 96.4 0.019 4E-07 62.1 10.3 93 361-495 326-421 (508)
37 PRK07152 nadD putative nicotin 96.4 0.01 2.2E-07 61.6 7.7 93 361-493 199-311 (342)
38 TIGR01596 cas3_HD CRISPR-assoc 96.1 0.011 2.4E-07 54.8 5.9 85 361-458 3-106 (177)
39 PRK00106 hypothetical protein; 95.9 0.041 8.9E-07 59.9 10.0 94 360-495 352-448 (535)
40 PRK10119 putative hydrolase; P 95.9 0.071 1.5E-06 51.9 10.7 107 358-483 25-139 (231)
41 smart00268 ACTIN Actin. ACTIN 95.9 0.09 1.9E-06 55.0 12.3 93 82-183 89-185 (373)
42 TIGR00488 putative HD superfam 95.8 0.039 8.5E-07 50.5 8.2 92 361-492 11-124 (158)
43 COG1077 MreB Actin-like ATPase 95.6 0.082 1.8E-06 53.3 9.9 103 68-180 81-190 (342)
44 cd00012 ACTIN Actin; An ubiqui 95.6 0.2 4.3E-06 52.3 13.6 92 83-183 90-185 (371)
45 PF08841 DDR: Diol dehydratase 95.4 0.035 7.6E-07 54.7 6.3 84 91-178 83-168 (332)
46 COG4820 EutJ Ethanolamine util 95.3 0.054 1.2E-06 50.9 6.8 141 12-176 28-173 (277)
47 PTZ00280 Actin-related protein 95.2 0.31 6.6E-06 51.9 13.5 99 83-183 97-202 (414)
48 PRK00227 glnD PII uridylyl-tra 95.2 0.025 5.4E-07 63.6 5.3 55 399-454 402-456 (693)
49 COG4819 EutA Ethanolamine util 94.9 0.28 6.1E-06 49.5 11.2 154 15-176 7-178 (473)
50 PRK03381 PII uridylyl-transfer 94.9 0.033 7.2E-07 63.9 5.3 55 399-454 442-496 (774)
51 PTZ00004 actin-2; Provisional 94.9 0.58 1.2E-05 49.2 14.2 155 15-182 8-190 (378)
52 COG5371 Golgi nucleoside dipho 94.7 0.052 1.1E-06 56.8 5.6 143 13-161 120-285 (549)
53 COG3437 Response regulator con 94.6 0.062 1.4E-06 54.8 5.9 108 361-489 188-307 (360)
54 TIGR02692 tRNA_CCA_actino tRNA 94.5 0.042 9.1E-07 59.4 4.8 55 400-454 280-344 (466)
55 COG1078 HD superfamily phospho 94.4 0.061 1.3E-06 57.1 5.6 65 361-441 54-118 (421)
56 PRK05007 PII uridylyl-transfer 94.4 0.056 1.2E-06 62.9 5.7 56 398-454 497-552 (884)
57 PRK01759 glnD PII uridylyl-tra 93.8 0.089 1.9E-06 61.1 5.8 56 398-454 472-527 (854)
58 PRK04374 PII uridylyl-transfer 93.7 0.093 2E-06 60.9 5.7 54 399-453 486-539 (869)
59 smart00842 FtsA Cell division 93.7 0.29 6.4E-06 46.0 8.1 59 15-79 1-59 (187)
60 PRK00275 glnD PII uridylyl-tra 93.7 0.081 1.8E-06 61.7 5.1 54 399-453 497-550 (895)
61 PRK05092 PII uridylyl-transfer 93.5 0.11 2.5E-06 60.9 5.9 54 399-453 530-583 (931)
62 TIGR01693 UTase_glnD [Protein- 93.4 0.11 2.4E-06 60.5 5.7 56 398-454 464-519 (850)
63 PRK13917 plasmid segregation p 93.2 0.2 4.3E-06 52.0 6.7 40 142-181 184-225 (344)
64 PF00370 FGGY_N: FGGY family o 93.2 0.45 9.7E-06 46.6 8.9 79 14-99 1-80 (245)
65 PTZ00466 actin-like protein; P 92.9 1.8 4E-05 45.5 13.4 155 14-182 13-195 (380)
66 PRK10885 cca multifunctional t 92.9 0.18 3.8E-06 53.6 5.8 55 400-454 246-307 (409)
67 PRK03059 PII uridylyl-transfer 92.8 0.12 2.6E-06 60.0 4.8 54 399-453 477-530 (856)
68 PTZ00452 actin; Provisional 92.5 1.7 3.8E-05 45.6 12.7 94 81-182 93-189 (375)
69 TIGR03276 Phn-HD phosphonate d 92.3 0.61 1.3E-05 43.5 7.8 43 402-449 46-99 (179)
70 TIGR03192 benz_CoA_bzdQ benzoy 92.3 2 4.3E-05 43.4 12.1 115 14-166 33-149 (293)
71 TIGR02621 cas3_GSU0051 CRISPR- 92.2 0.77 1.7E-05 52.8 10.1 83 361-459 678-790 (844)
72 COG1418 Predicted HD superfami 92.2 0.29 6.3E-06 47.5 5.8 55 359-431 37-94 (222)
73 COG2206 c-di-GMP phosphodieste 92.1 0.31 6.7E-06 50.5 6.4 105 361-492 151-273 (344)
74 TIGR03739 PRTRC_D PRTRC system 92.0 0.28 6.1E-06 50.3 5.9 66 117-182 141-208 (320)
75 TIGR01991 HscA Fe-S protein as 91.7 2.3 5E-05 47.6 13.1 115 59-181 103-224 (599)
76 TIGR02261 benz_CoA_red_D benzo 91.5 1.3 2.9E-05 43.9 9.6 118 14-166 2-121 (262)
77 PTZ00281 actin; Provisional 91.2 1.3 2.8E-05 46.5 10.0 94 81-182 94-190 (376)
78 PF00022 Actin: Actin; InterP 91.0 4.4 9.5E-05 42.5 13.8 92 82-182 88-183 (393)
79 CHL00094 dnaK heat shock prote 90.8 2.7 5.8E-05 47.3 12.5 74 104-181 151-230 (621)
80 TIGR03286 methan_mark_15 putat 90.0 1.2 2.6E-05 46.8 8.3 120 13-166 144-264 (404)
81 PTZ00186 heat shock 70 kDa pre 89.7 3.6 7.8E-05 46.5 12.3 111 60-178 135-252 (657)
82 PRK00290 dnaK molecular chaper 89.6 2.5 5.5E-05 47.5 11.1 107 68-180 114-227 (627)
83 COG1940 NagC Transcriptional r 89.4 8.9 0.00019 38.9 14.1 144 13-174 6-163 (314)
84 PRK13298 tRNA CCA-pyrophosphor 89.1 0.66 1.4E-05 49.1 5.6 55 400-454 247-310 (417)
85 PRK05183 hscA chaperone protei 89.0 4.6 0.0001 45.4 12.5 108 68-181 130-244 (616)
86 TIGR02350 prok_dnaK chaperone 88.3 3.5 7.6E-05 46.1 11.0 88 69-161 112-201 (595)
87 PRK13410 molecular chaperone D 88.0 5.4 0.00012 45.2 12.3 113 60-180 110-229 (668)
88 PF14574 DUF4445: Domain of un 88.0 5.3 0.00012 42.4 11.5 158 15-176 3-196 (412)
89 PF00012 HSP70: Hsp70 protein; 87.9 4.2 9.2E-05 45.2 11.5 77 103-182 150-232 (602)
90 PRK11678 putative chaperone; P 87.5 5.8 0.00013 42.7 11.7 86 70-161 132-227 (450)
91 PRK13321 pantothenate kinase; 87.2 13 0.00028 36.8 13.2 130 15-166 2-147 (256)
92 COG2844 GlnD UTP:GlnB (protein 87.1 0.56 1.2E-05 52.9 3.7 55 398-453 482-536 (867)
93 PTZ00400 DnaK-type molecular c 86.8 5.6 0.00012 45.1 11.6 107 68-180 155-268 (663)
94 PLN03184 chloroplast Hsp70; Pr 86.6 6.6 0.00014 44.6 12.0 73 105-181 189-267 (673)
95 PF00480 ROK: ROK family; Int 86.4 8.7 0.00019 35.2 11.0 136 17-175 1-149 (179)
96 PRK10939 autoinducer-2 (AI-2) 86.3 2.4 5.2E-05 46.5 8.2 78 14-98 4-84 (520)
97 TIGR01353 dGTP_triPase deoxygu 85.9 1 2.2E-05 47.3 4.8 85 361-453 41-146 (381)
98 COG0554 GlpK Glycerol kinase [ 85.7 2.5 5.5E-05 45.1 7.4 102 12-119 4-134 (499)
99 PRK01433 hscA chaperone protei 85.1 4.8 0.0001 45.0 9.8 90 66-161 120-211 (595)
100 PRK13480 3'-5' exoribonuclease 84.5 1 2.2E-05 46.0 3.9 76 361-454 162-253 (314)
101 KOG2517 Ribulose kinase and re 84.5 4.1 8.8E-05 44.2 8.5 83 12-99 5-90 (516)
102 PRK01286 deoxyguanosinetriphos 84.5 1.2 2.6E-05 45.9 4.3 74 361-453 65-155 (336)
103 PF14450 FtsA: Cell division p 83.5 2.1 4.5E-05 37.1 4.9 33 145-177 1-33 (120)
104 PRK00047 glpK glycerol kinase; 83.3 4.9 0.00011 43.9 8.8 76 13-97 5-83 (498)
105 PRK13318 pantothenate kinase; 82.8 19 0.00041 35.6 12.1 128 15-166 2-147 (258)
106 COG4341 Predicted HD phosphohy 82.8 2.3 5.1E-05 38.6 4.9 62 402-471 51-126 (186)
107 PRK05318 deoxyguanosinetriphos 82.7 1.6 3.4E-05 46.7 4.6 82 361-452 61-163 (432)
108 TIGR02628 fuculo_kin_coli L-fu 82.7 5.1 0.00011 43.3 8.6 75 14-97 2-79 (465)
109 PRK13411 molecular chaperone D 82.5 11 0.00025 42.5 11.6 95 60-161 108-204 (653)
110 PTZ00009 heat shock 70 kDa pro 82.5 15 0.00033 41.6 12.6 108 69-180 122-236 (653)
111 PRK01096 deoxyguanosinetriphos 81.3 1.6 3.5E-05 46.7 4.1 49 361-413 64-113 (440)
112 PF01869 BcrAD_BadFG: BadF/Bad 81.3 28 0.00061 34.4 12.8 126 17-167 2-130 (271)
113 COG1924 Activator of 2-hydroxy 81.0 7.1 0.00015 40.5 8.2 135 11-182 133-271 (396)
114 COG0443 DnaK Molecular chapero 80.7 9.6 0.00021 42.5 10.0 96 59-161 94-190 (579)
115 COG1070 XylB Sugar (pentulose 78.6 9.2 0.0002 41.8 8.9 77 13-97 4-83 (502)
116 TIGR01234 L-ribulokinase L-rib 78.6 7.7 0.00017 42.7 8.4 78 14-97 2-91 (536)
117 TIGR00744 ROK_glcA_fam ROK fam 78.6 59 0.0013 32.8 14.4 130 17-167 2-147 (318)
118 smart00732 YqgFc Likely ribonu 78.5 12 0.00026 30.6 7.7 84 15-122 3-91 (99)
119 PF06406 StbA: StbA protein; 78.5 5.1 0.00011 41.0 6.5 100 80-183 87-207 (318)
120 PRK04926 dgt deoxyguanosinetri 78.5 2.8 6E-05 45.5 4.7 51 361-413 68-121 (503)
121 PRK04123 ribulokinase; Provisi 78.2 10 0.00022 42.0 9.2 82 14-99 4-90 (548)
122 TIGR01311 glycerol_kin glycero 77.9 9 0.0002 41.7 8.6 75 14-97 2-79 (493)
123 PF14450 FtsA: Cell division p 77.8 1.7 3.6E-05 37.8 2.3 27 15-41 1-27 (120)
124 PTZ00294 glycerol kinase-like 77.6 12 0.00027 40.8 9.6 77 14-99 3-84 (504)
125 PRK03007 deoxyguanosinetriphos 76.0 3 6.5E-05 44.5 4.1 73 361-452 73-169 (428)
126 COG1713 Predicted HD superfami 75.8 3.5 7.6E-05 38.6 3.9 72 361-456 20-113 (187)
127 TIGR00555 panK_eukar pantothen 75.8 93 0.002 31.3 16.2 132 16-181 3-138 (279)
128 PRK10331 L-fuculokinase; Provi 74.7 17 0.00036 39.4 9.6 77 13-98 2-81 (470)
129 KOG2681 Metal-dependent phosph 74.3 4.1 8.9E-05 42.8 4.4 46 361-413 76-121 (498)
130 KOG0100 Molecular chaperones G 74.3 26 0.00055 36.8 9.9 96 56-165 143-249 (663)
131 PF11215 DUF3010: Protein of u 72.3 60 0.0013 28.9 10.6 99 14-125 2-104 (138)
132 PF01968 Hydantoinase_A: Hydan 68.8 6.3 0.00014 39.8 4.3 53 116-172 53-106 (290)
133 PRK09698 D-allose kinase; Prov 68.6 1.3E+02 0.0029 30.0 14.5 136 13-168 4-154 (302)
134 COG2971 Predicted N-acetylgluc 67.5 47 0.001 33.6 10.0 135 13-174 5-149 (301)
135 PRK13317 pantothenate kinase; 67.4 1.3E+02 0.0029 30.1 13.5 63 114-180 67-132 (277)
136 TIGR03760 ICE_TraI_Pfluor inte 66.5 6.5 0.00014 38.0 3.7 19 397-415 103-121 (218)
137 PLN02295 glycerol kinase 66.2 23 0.00049 38.8 8.4 75 15-98 2-83 (512)
138 TIGR01315 5C_CHO_kinase FGGY-f 65.0 28 0.00061 38.4 8.8 75 15-96 2-77 (541)
139 COG0232 Dgt dGTP triphosphohyd 63.7 8.1 0.00017 40.8 4.0 41 361-414 71-111 (412)
140 TIGR01312 XylB D-xylulose kina 61.8 25 0.00055 37.9 7.7 72 17-97 2-76 (481)
141 PRK13324 pantothenate kinase; 61.6 1.7E+02 0.0036 29.1 12.7 130 15-166 2-147 (258)
142 PRK13311 N-acetyl-D-glucosamin 58.1 1.3E+02 0.0028 29.4 11.4 133 15-167 2-146 (256)
143 TIGR01314 gntK_FGGY gluconate 57.2 47 0.001 36.3 8.8 73 15-97 2-77 (505)
144 cd08190 HOT Hydroxyacid-oxoaci 56.8 18 0.00038 38.6 5.2 78 71-155 10-92 (414)
145 PRK15027 xylulokinase; Provisi 54.8 47 0.001 36.0 8.3 75 15-98 2-77 (484)
146 COG1069 AraB Ribulose kinase [ 54.4 44 0.00095 36.5 7.6 74 14-93 4-78 (544)
147 PF01890 CbiG_C: Cobalamin syn 54.4 53 0.0012 28.5 7.0 53 75-130 21-73 (121)
148 PRK09557 fructokinase; Reviewe 52.6 1.4E+02 0.003 29.9 10.9 133 15-169 2-148 (301)
149 cd08192 Fe-ADH7 Iron-containin 52.2 21 0.00046 37.3 4.9 80 71-155 11-93 (370)
150 PRK09860 putative alcohol dehy 51.8 65 0.0014 33.9 8.5 78 71-155 18-100 (383)
151 PRK13310 N-acetyl-D-glucosamin 50.9 2.7E+02 0.0058 27.8 12.7 132 15-168 2-147 (303)
152 cd08191 HHD 6-hydroxyhexanoate 49.2 35 0.00076 35.9 6.0 79 71-155 10-91 (386)
153 COG3894 Uncharacterized metal- 49.0 28 0.0006 37.6 5.0 161 11-176 161-360 (614)
154 PRK00109 Holliday junction res 47.6 1.6E+02 0.0036 26.1 9.2 94 14-131 5-108 (138)
155 PRK07027 cobalamin biosynthesi 47.4 70 0.0015 28.0 6.6 61 60-129 14-74 (126)
156 cd08188 Fe-ADH4 Iron-containin 46.8 57 0.0012 34.2 7.1 80 71-155 15-97 (377)
157 PF00233 PDEase_I: 3'5'-cyclic 46.5 32 0.00069 33.6 4.9 42 361-413 5-46 (237)
158 PLN02669 xylulokinase 46.3 76 0.0016 35.2 8.3 79 12-96 7-97 (556)
159 PF07318 DUF1464: Protein of u 45.9 1.6E+02 0.0035 30.5 9.9 66 103-169 90-180 (343)
160 PRK10624 L-1,2-propanediol oxi 44.7 80 0.0017 33.2 7.8 77 72-155 18-99 (382)
161 PRK15454 ethanol dehydrogenase 44.3 79 0.0017 33.4 7.7 80 71-155 36-118 (395)
162 TIGR02638 lactal_redase lactal 44.2 85 0.0018 32.9 7.9 78 71-155 16-98 (379)
163 cd08551 Fe-ADH iron-containing 43.4 1E+02 0.0022 32.1 8.4 78 71-155 10-92 (370)
164 TIGR03123 one_C_unchar_1 proba 43.2 26 0.00056 35.9 3.7 139 17-174 2-159 (318)
165 TIGR01175 pilM type IV pilus a 43.1 1.3E+02 0.0027 30.9 9.0 34 87-125 284-317 (348)
166 KOG0676 Actin and related prot 42.9 1.3E+02 0.0028 31.6 8.8 89 83-181 94-185 (372)
167 PRK13331 pantothenate kinase; 42.6 2.1E+02 0.0045 28.4 9.8 25 1-31 1-25 (251)
168 COG1548 Predicted transcriptio 41.1 3.6E+02 0.0078 26.9 10.8 128 15-164 5-151 (330)
169 PF00633 HHH: Helix-hairpin-he 40.5 15 0.00033 23.6 1.0 26 269-296 4-29 (30)
170 TIGR02627 rhamnulo_kin rhamnul 40.0 46 0.001 35.8 5.3 17 17-33 2-18 (454)
171 COG0816 Predicted endonuclease 38.1 1.4E+02 0.0031 26.8 7.1 87 14-123 3-96 (141)
172 TIGR02578 cas_TM1811_Csm1 CRIS 37.9 15 0.00032 41.6 1.1 26 403-428 2-35 (648)
173 cd08176 LPO Lactadehyde:propan 37.8 49 0.0011 34.6 5.0 77 72-155 16-97 (377)
174 cd08189 Fe-ADH5 Iron-containin 37.5 1.5E+02 0.0032 31.0 8.5 80 71-155 13-95 (374)
175 TIGR03706 exo_poly_only exopol 36.6 2.2E+02 0.0048 28.7 9.4 55 15-74 127-184 (300)
176 cd07766 DHQ_Fe-ADH Dehydroquin 36.1 44 0.00096 34.1 4.2 79 72-156 11-91 (332)
177 COG1454 EutG Alcohol dehydroge 34.7 1.8E+02 0.0039 30.6 8.4 78 71-155 16-98 (377)
178 PRK12408 glucokinase; Provisio 34.3 1.5E+02 0.0032 30.5 7.8 105 5-130 6-125 (336)
179 cd08194 Fe-ADH6 Iron-containin 33.7 60 0.0013 34.0 4.8 80 71-155 10-92 (375)
180 TIGR02707 butyr_kinase butyrat 33.2 5.7E+02 0.012 26.5 14.0 26 142-168 173-198 (351)
181 PF03610 EIIA-man: PTS system 33.1 71 0.0015 27.1 4.4 20 136-155 52-71 (116)
182 PRK10854 exopolyphosphatase; P 30.8 2.3E+02 0.0049 31.2 8.8 57 14-73 138-195 (513)
183 TIGR02259 benz_CoA_red_A benzo 30.8 76 0.0016 33.6 4.8 19 13-31 2-20 (432)
184 PF11762 Arabinose_Iso_C: L-ar 30.4 64 0.0014 27.7 3.5 19 14-33 32-50 (115)
185 PRK13321 pantothenate kinase; 29.7 82 0.0018 31.0 4.8 29 145-173 2-30 (256)
186 COG0248 GppA Exopolyphosphatas 29.6 1.9E+02 0.0041 31.6 7.8 78 13-97 129-211 (492)
187 cd08185 Fe-ADH1 Iron-containin 29.4 1.9E+02 0.0042 30.2 7.8 75 73-155 15-95 (380)
188 COG2254 Predicted HD superfami 29.4 22 0.00048 34.5 0.6 32 396-427 48-89 (230)
189 COG4680 Uncharacterized protei 29.0 44 0.00095 27.5 2.1 18 15-32 56-73 (98)
190 COG3426 Butyrate kinase [Energ 28.6 1.5E+02 0.0033 29.9 6.1 129 145-320 5-133 (358)
191 COG3481 Predicted HD-superfami 28.1 61 0.0013 32.6 3.5 26 397-422 163-188 (287)
192 cd08193 HVD 5-hydroxyvalerate 27.9 93 0.002 32.5 5.0 80 71-155 13-95 (376)
193 cd08169 DHQ-like Dehydroquinat 27.5 2.1E+02 0.0045 29.6 7.5 80 73-156 12-96 (344)
194 cd08181 PPD-like 1,3-propanedi 27.2 99 0.0021 32.1 5.1 76 74-155 16-95 (357)
195 PF14829 GPAT_N: Glycerol-3-ph 27.2 51 0.0011 26.1 2.1 41 95-135 3-46 (77)
196 KOG1573 Aldehyde reductase [Ge 26.9 76 0.0016 29.0 3.5 25 398-422 114-138 (204)
197 KOG0679 Actin-related protein 26.4 64 0.0014 33.7 3.3 91 82-180 100-193 (426)
198 PF08668 HDOD: HDOD domain; I 26.3 91 0.002 28.9 4.2 46 361-423 97-142 (196)
199 PRK13318 pantothenate kinase; 26.1 1.1E+02 0.0024 30.1 5.0 29 145-173 2-30 (258)
200 cd08550 GlyDH-like Glycerol_de 26.1 1.3E+02 0.0029 30.9 5.8 78 72-156 11-90 (349)
201 cd08186 Fe-ADH8 Iron-containin 25.7 2.7E+02 0.0058 29.2 8.1 77 72-155 11-96 (383)
202 cd08549 G1PDH_related Glycerol 25.6 1.4E+02 0.003 30.7 5.7 75 76-155 15-92 (332)
203 PF11713 Peptidase_C80: Peptid 25.5 1.1E+02 0.0023 28.0 4.3 91 28-120 33-139 (157)
204 PRK00292 glk glucokinase; Prov 25.4 5.1E+02 0.011 26.1 9.9 119 14-154 3-139 (316)
205 PF08765 Mor: Mor transcriptio 25.2 4.1E+02 0.0089 22.3 8.2 66 282-358 19-86 (108)
206 PRK03011 butyrate kinase; Prov 24.4 8.2E+02 0.018 25.5 11.7 148 12-170 1-202 (358)
207 COG0145 HyuA N-methylhydantoin 23.9 86 0.0019 35.6 4.1 31 144-174 279-309 (674)
208 TIGR00250 RNAse_H_YqgF RNAse H 23.8 1.6E+02 0.0036 25.8 5.1 83 17-123 2-91 (130)
209 KOG0678 Actin-related protein 23.6 4.2E+02 0.0091 27.4 8.3 101 70-175 86-196 (415)
210 cd08182 HEPD Hydroxyethylphosp 23.5 1.9E+02 0.0041 30.1 6.4 77 71-155 10-89 (367)
211 cd08175 G1PDH Glycerol-1-phosp 23.4 1.1E+02 0.0025 31.5 4.7 78 72-155 11-92 (348)
212 PF13941 MutL: MutL protein 22.0 1.9E+02 0.0041 31.3 6.0 53 15-75 2-55 (457)
213 PF00370 FGGY_N: FGGY family o 21.5 1.4E+02 0.0031 28.8 4.7 30 145-174 2-32 (245)
214 PRK05788 cobalamin biosynthesi 21.3 2.6E+02 0.0057 28.6 6.7 63 58-129 203-265 (315)
215 PRK12440 acetate kinase; Revie 21.3 2.1E+02 0.0045 30.4 6.0 24 10-33 1-24 (397)
216 PRK00002 aroB 3-dehydroquinate 21.1 4E+02 0.0088 27.5 8.2 71 78-156 25-105 (358)
217 PF13911 AhpC-TSA_2: AhpC/TSA 21.0 1.5E+02 0.0031 25.0 4.1 55 72-136 2-56 (115)
218 PRK11031 guanosine pentaphosph 20.8 3.3E+02 0.0072 29.7 7.8 55 14-73 133-190 (496)
219 PF07514 TraI_2: Putative heli 20.4 1E+02 0.0023 31.7 3.6 19 395-413 100-118 (327)
No 1
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=100.00 E-value=1.6e-103 Score=844.32 Aligned_cols=461 Identities=28% Similarity=0.392 Sum_probs=419.3
Q ss_pred CCceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE
Q 010059 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR 90 (519)
Q Consensus 11 ~~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~ 90 (519)
+.+.+|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ +|+
T Consensus 4 ~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~--~i~ 80 (496)
T PRK11031 4 SSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS--QIR 80 (496)
T ss_pred CCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEE
Confidence 456899999999999999999864 78999999999999999999999999999999999999999999999995 799
Q ss_pred EEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeee
Q 010059 91 AVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (519)
Q Consensus 91 ~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~S 170 (519)
+|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++.. ++++++||||||||+++++++++.+++|
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~-~~~lviDIGGGStEl~~~~~~~~~~~~S 159 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGA-DQRLVVDIGGASTELVTGTGAQATSLFS 159 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCC-CCEEEEEecCCeeeEEEecCCceeeeeE
Confidence 999999999999999999999999999999999999999999999998753 4589999999999999999999999999
Q ss_pred eehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCeEEEeehHHHHHHHHHHHcCCCCccccCCCCC
Q 010059 171 VNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDF 249 (519)
Q Consensus 171 lplG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~iG~gGt~~~l~~~~~~~y~~~~~~~~~~~ 249 (519)
+|+|+||++++|+.++ +++.+..++.+|+++.+.+. .++++..++..+||+|||+++++++.... .
T Consensus 160 l~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~lig~gGt~~~la~~~~~~-~---------- 226 (496)
T PRK11031 160 LSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRPV--ADELREHGWQVCVGASGTVQALQEIMMAQ-G---------- 226 (496)
T ss_pred EeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH--HHHHhhcCCCEEEEEChHHHHHHHHHHhc-C----------
Confidence 9999999999998764 57777888999999999743 44555556667999999999999875321 1
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 010059 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (519)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l 329 (519)
.+ ..++.++++++++++..++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++++||++|||||++++++
T Consensus 227 ---~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~~~~ 300 (496)
T PRK11031 227 ---MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVYGML 300 (496)
T ss_pred ---CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHHHHH
Confidence 11 248999999999999999987 899999999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCCCcchhhHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhh
Q 010059 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (519)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~~~~ry~~~~~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~Lh 409 (519)
.+.. ..|++..|+.+++.||++|+ .|+++|+++|.+|||+|++.|+ ++++++.||++||+||
T Consensus 301 ~~~~-----~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~-----------l~~~~~~LL~~Aa~Lh 362 (496)
T PRK11031 301 HLPV-----EQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWH-----------LEPRSRELLISACQLH 362 (496)
T ss_pred hhhc-----ccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcC-----------CChHHHHHHHHHHHHH
Confidence 7631 24777889999999999986 8999999999999999999998 4567899999999999
Q ss_pred hhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhc
Q 010059 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (519)
Q Consensus 410 diG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld 489 (519)
|||++||+++||+||||||+|++ ++||||+|+.+||.+++||+|+.|+..++.+..|+++ .+++|++|||||++||
T Consensus 363 diG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~~~h~k~~~~~~~~~~~~l~~~---~v~~L~~iLRLA~~Ld 438 (496)
T PRK11031 363 EIGLSVDFKQAPQHAAYLVRNLD-LPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNALPPR---VAERLCRLLRLAIIFA 438 (496)
T ss_pred hcCCccCCCccchHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccCHH---HHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 9999999999999999999999887777777778766 5999999999999999
Q ss_pred c-ccCCCCcceEEEEeCCEEEEEecCCC
Q 010059 490 Q-NDCVNLRGVDFFHSYEGFKLDGHPPF 516 (519)
Q Consensus 490 ~-s~~~~i~~i~~~~~~~~~~l~~~~~~ 516 (519)
+ ++.++|+++++.++++.++|.+++.|
T Consensus 439 ~~~~~~~i~~~~~~~~~~~l~l~~~~~~ 466 (496)
T PRK11031 439 SRRRDDLLPEVTLQANDELLTLTLPQGW 466 (496)
T ss_pred cccCCCCCCceEEEEeCCEEEEEEChhh
Confidence 4 56889999999998889999998776
No 2
>PRK10854 exopolyphosphatase; Provisional
Probab=100.00 E-value=3.6e-101 Score=829.92 Aligned_cols=462 Identities=25% Similarity=0.399 Sum_probs=413.3
Q ss_pred CceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~ 91 (519)
+..+|||||||||+||+|+++. ++.++++++.|++||||+|++.+|.|++++|+++++||++|+++|++|+|+ ++++
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~~-~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~--~v~~ 86 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPA--NVCI 86 (513)
T ss_pred CCEEEEEEeccchheEEEEEec-CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEE
Confidence 3579999999999999999996 579999999999999999999999999999999999999999999999995 7999
Q ss_pred EEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeee
Q 010059 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (519)
Q Consensus 92 vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl 171 (519)
|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+..|+
T Consensus 87 vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~~~~~~~~~S~ 165 (513)
T PRK10854 87 VGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGENFEPILVESR 165 (513)
T ss_pred EehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEecCCCeeEeEEE
Confidence 9999999999999999999999999999999999999999999999874 356899999999999999999999999999
Q ss_pred ehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCeEEEeehHHHHHHHHHHHcCCCCccccCCCCCC
Q 010059 172 NLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFG 250 (519)
Q Consensus 172 plG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~iG~gGt~~~l~~~~~~~y~~~~~~~~~~~~ 250 (519)
|+|+||++++|..++ +++.+..++.+++++.+...+|. .+..++..+||+|||+++++++....
T Consensus 166 ~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~lig~gGT~r~la~i~~~~------------- 230 (513)
T PRK10854 166 RMGCVSFAQLYFPGGVISKENFQRARLAAAQKLETLAWQ--YRIQGWNVALGASGTIKAAHEVLVEM------------- 230 (513)
T ss_pred ecceeeHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hhhcCCCEEEEechHHHHHHHHHHhC-------------
Confidence 999999999988764 57777888999999999754332 22234557999999999999976421
Q ss_pred CCccccccCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHh
Q 010059 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLA 330 (519)
Q Consensus 251 ~~~~~~~i~~~~l~~l~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l~ 330 (519)
..+.+.|+.++|+++++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||+.|||||++++++.
T Consensus 231 -~~~~~~i~~~~l~~l~~~l~~~~~~--~r~~~~gl~~~Rad~I~~g~~il~~i~~~~~~~~i~vs~~gLReGll~~~~~ 307 (513)
T PRK10854 231 -GEKDGLITPERLEMLVKEVLKHKNF--AALSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEG 307 (513)
T ss_pred -CCCCCccCHHHHHHHHHHHHCCCHH--HHHhCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHh
Confidence 1123579999999999999999987 9999999999999999999999999999999999999999999999999875
Q ss_pred hhcCCCCCcchhhHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHhcc-cccchhhhhhcccCcchHHHHHHHHHhh
Q 010059 331 KVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCD-KLYNNQVKLIASFEDKDLEYLEAACLLH 409 (519)
Q Consensus 331 ~~~~~~~~~~~~~~~s~~~~~~ry~~~~~~~ha~~V~~~a~~lfd~l~~~~-~l~~~~~~~~~~~~~~~~~lL~~Aa~Lh 409 (519)
+. ...|++.+|++++++||++|+ .|+++|+++|++|||+|++.| ++ +++++++||++||+||
T Consensus 308 ~~-----~~~d~~~~s~~~la~ry~~d~--~ha~~V~~~a~~LFd~l~~~h~~~----------~~~~~~~LL~~Aa~Lh 370 (513)
T PRK10854 308 RF-----RHQDIRSRTAKSLANHYNIDR--EQARRVLETTMQLYEQWREQNPKL----------AHPQLEALLKWAAMLH 370 (513)
T ss_pred hc-----ccccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhhhhhhccc----------CCHHHHHHHHHHHHHH
Confidence 42 124788899999999999986 899999999999999999998 42 2567899999999999
Q ss_pred hhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhc
Q 010059 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (519)
Q Consensus 410 diG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld 489 (519)
|||++||+++||+||||||+|++ |+||||+|+.+||.+||||||+.|+..++.+..|+ ++.+.+|++|||||++||
T Consensus 371 diG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~ryh~k~~p~~~~~~~~~l~---~~~~~~l~~iLRLA~~Ld 446 (513)
T PRK10854 371 EVGLNINHSGLHRHSAYILQNTD-LPGFNQEQQLMLATLVRYHRKAIKLDDLPRFTLFK---KKQYLPLIQLLRLGVLLN 446 (513)
T ss_pred hcCCccCCCCcchhHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCChhhhhhhhccc---HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 99999999999999999999999987777888887 446678999999999999
Q ss_pred cccCCC--CcceEEEEeCCEEEEEecCCC
Q 010059 490 QNDCVN--LRGVDFFHSYEGFKLDGHPPF 516 (519)
Q Consensus 490 ~s~~~~--i~~i~~~~~~~~~~l~~~~~~ 516 (519)
+++.++ +.++++..+++.+.|.++..|
T Consensus 447 ~~~~~~~~~~~v~~~~~~~~l~l~l~~~~ 475 (513)
T PRK10854 447 NQRQATTTPPTLRLITDDSHWTLRFPHDW 475 (513)
T ss_pred CCCCCCCCCCeEEEEEcCCEEEEEECccc
Confidence 777554 566777667777788887665
No 3
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-94 Score=758.39 Aligned_cols=448 Identities=35% Similarity=0.514 Sum_probs=405.5
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~v 92 (519)
+++|+|||||||+||+|+++.+ +.++++++.|+.||||++++.+|+|++|+|+|+++||++|+++++.++++ ++++|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~-~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~--~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAE--EVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC-CccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCC--EEEEe
Confidence 4799999999999999999986 89999999999999999999999999999999999999999999999985 79999
Q ss_pred EehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeee
Q 010059 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (519)
Q Consensus 93 ATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Slp 172 (519)
||+|+|+|+|+++|+.+++++||++|+||||+|||||+|+||.++++. .++++++||||||||++++++.++....|+|
T Consensus 80 ATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~~~~~~~~~Sl~ 158 (492)
T COG0248 80 ATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGDNFEIGLLISLP 158 (492)
T ss_pred hhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEecCCccceeEEee
Confidence 999999999999999999999999999999999999999999999985 5669999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCeEEEeehHHHHHHHHHHH--cCCCCccccCCCCC
Q 010059 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVV--SGYDRDFVDNVGDF 249 (519)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~iG~gGt~~~l~~~~~--~~y~~~~~~~~~~~ 249 (519)
+||||++++|+.++ ++.++...++++++..+++.++. .....+..+||+|||+|+++++.+ ..||.+.+
T Consensus 159 ~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~vg~sGT~r~la~l~~~~~~y~~~~~------ 230 (492)
T COG0248 159 LGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKE--YRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVL------ 230 (492)
T ss_pred cceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHH--HHhhhhccEEEccHHHHHHHHHHHhcccCChhhc------
Confidence 99999999999874 68888999999999999876432 222345569999999999999864 45775544
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 010059 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (519)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l 329 (519)
|+|.|+.+++.++.+++..++.+ ++.+++|++++|+|+|++|++|+.++|+.+++++|+||+.|||||++++++
T Consensus 231 ----~~~~it~~~l~~~~~~l~~~~~~--~~~~~~gl~~~Ra~vi~~G~~il~a~~~~l~~~~~~vs~~glREG~l~~~l 304 (492)
T COG0248 231 ----HGYEITAEELEKLLERLIRMTSE--ERLKLEGLSKDRADVILAGAAILEAVFEALSIERMIVSDGGLREGVLYDLL 304 (492)
T ss_pred ----cCceEcHHHHHHHHHHHHhCChH--hHHhccCCChhhhHhhhhHHHHHHHHHHhcCcceEEeccccccchHHHHHh
Confidence 46899999999999999999987 899999999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCCCcchhhHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhh
Q 010059 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (519)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~~~~ry~~~~~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~Lh 409 (519)
.+... .+++.+++.+++.+|.++. .|+.+|++.|..+|+++.+.+.+ .+++.++. |+|||+||
T Consensus 305 ~~~~~-----~~~r~~~~~~~~~~~~~~~--~~~~~v~~~a~~l~~~~~~~~~~---------~~~~~~~~-l~~Aa~Lh 367 (492)
T COG0248 305 LRFEA-----EDIRKRSLLELALRYLIDL--AQAKRVAKLALELFDQLLALLKI---------DEEAEERL-LEAAAMLH 367 (492)
T ss_pred hhhhh-----hhhhccHHHHHHHHhhhhH--HhHhhHHHHHHHHHHHhhhcccc---------CCChHHHH-HHHHHHHH
Confidence 76542 2367789999999998886 89999999999999999987663 24555566 99999999
Q ss_pred hhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhc
Q 010059 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (519)
Q Consensus 410 diG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld 489 (519)
|||++||+++||+||+|+|.|++ ++||||+|+.++|.+++||++..++.....+ ++.....+..|+++||+|..||
T Consensus 368 ~iG~~i~~~~~~~hsayiI~~s~-l~Gf~~~e~~~lA~l~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~llrla~~L~ 443 (492)
T COG0248 368 EIGLNISHSGHHKHSAYIIRNSD-LPGFSHEERLLLALLARYHRKAVKLKKLAPF---SKKKLKSVRRLLGLLRLAVILD 443 (492)
T ss_pred HhccccCcccHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHHhcCCCccccccc---cchhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998 9999999999999999999998776554433 7778889999999999999999
Q ss_pred cccCCCCcce
Q 010059 490 QNDCVNLRGV 499 (519)
Q Consensus 490 ~s~~~~i~~i 499 (519)
+++...+...
T Consensus 444 ~~~~~~~~~~ 453 (492)
T COG0248 444 RARQGDIEPS 453 (492)
T ss_pred ccccCcCCcc
Confidence 9998776543
No 4
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=100.00 E-value=8.2e-64 Score=506.42 Aligned_cols=295 Identities=33% Similarity=0.501 Sum_probs=269.5
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+|+|||||||+||.|++++ ++.++++++.+.+||||++++.+|.|++++|++++++|++|++++++|+++ ++++|||
T Consensus 2 ~AvIDiGSNsirl~I~~~~-~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGV-EGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEec-CCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEEc
Confidence 7999999999999999986 578999999999999999999999999999999999999999999999995 7999999
Q ss_pred hhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehh
Q 010059 95 AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (519)
Q Consensus 95 sA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG 174 (519)
+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+|+.+.++.. +++++||||||||+++++++++.+++|+|+|
T Consensus 79 sa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~~~~~~~~~Sl~lG 156 (300)
T TIGR03706 79 AALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGKDFEPGEGVSLPLG 156 (300)
T ss_pred HHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEecCCCEeEEEEEccc
Confidence 99999999999999999999999999999999999999999988653 3699999999999999999999999999999
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhcchhHHHHhcCCeEEEeehHHHHHHHHHHHc--CCCCccccCCCCCCC
Q 010059 175 HVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS--GYDRDFVDNVGDFGG 251 (519)
Q Consensus 175 ~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~iG~gGt~~~l~~~~~~--~y~~~~~~~~~~~~~ 251 (519)
++||+++|...+ |+.++.+.+++|+++.+... ++++..+...+||+|||+++++++... .|+..
T Consensus 157 ~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~lig~gGt~~~la~~~~~~~~~~~~---------- 223 (300)
T TIGR03706 157 CVRLTEQFFPDGPISKKSLKQARKAAREELASL---KWLKKGGWRPLYGVGGTWRALARIHQAQHGYPLH---------- 223 (300)
T ss_pred eEEhHHhhCCCCCCCHHHHHHHHHHHHHHHHHh---HHHhhCCCCEEEEehHHHHHHHHHHHhcccCCCc----------
Confidence 999999998754 57788889999999999754 334444455699999999999998643 35432
Q ss_pred CccccccCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 010059 252 CKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (519)
Q Consensus 252 ~~~~~~i~~~~l~~l~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l 329 (519)
..|++.++.++|+++++++..++.+ ++.+.+|++++|+|+|+||++|+.++|+.+++++++||++|||||++++++
T Consensus 224 ~~~~~~l~~~~~~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~~~i~vs~~glreGl~~~~~ 299 (300)
T TIGR03706 224 GLHGYTITAEGLLELLEELIKLSRE--ERLKLPGLSKDRADILPGGAAVLEELFRALGIEQMVFSRGGLREGVLYELL 299 (300)
T ss_pred CccCCEECHHHHHHHHHHHHcCCHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhhc
Confidence 3456889999999999999999988 999999999999999999999999999999999999999999999998864
No 5
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=100.00 E-value=2.2e-57 Score=457.09 Aligned_cols=282 Identities=35% Similarity=0.583 Sum_probs=247.3
Q ss_pred eEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHH
Q 010059 28 LIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFV 107 (519)
Q Consensus 28 ~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~ 107 (519)
+|++++ ++.++++++.+.+||||++++.+|.|++++|++++++|++|++++++|+|+ +|+||||+|+|+|+|+++|+
T Consensus 1 ~I~~~~-~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~~~~~v~--~i~~vATsA~R~A~N~~~~~ 77 (285)
T PF02541_consen 1 VIAEVK-DGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEILKDYGVE--KIRAVATSALREAKNSDEFL 77 (285)
T ss_dssp EEEEEE-TTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTGS--EEEEEEEHHHHHSTTHHHHH
T ss_pred CEEEeC-CCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEhhHHHHhCcCHHHHH
Confidence 689998 577999999999999999999999999999999999999999999999995 79999999999999999999
Q ss_pred HHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhhcCCC-
Q 010059 108 ECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS- 186 (519)
Q Consensus 108 ~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~~~- 186 (519)
++|+++||++|+||||+|||+|+|+||.+.+ .+.++++++||||||||+++++++++.++.|+|+|+++++++|...+
T Consensus 78 ~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~~~~~~~ 156 (285)
T PF02541_consen 78 DRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVFSQSLPLGAVRLTERFFKSDP 156 (285)
T ss_dssp HHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEEEEEES--HHHHHHHHSGCSS
T ss_pred HHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeEeeeeehHHHHHHHHHhccCc
Confidence 9999999999999999999999999999988 34567999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHHHHHhcchhHHHHhcC-CeEEEeehHHHHHHHHHHHcCCCCccccCCCCCCCCccccccCHHHHHH
Q 010059 187 GNFEEVLKMREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKG 265 (519)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~iG~gGt~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~i~~~~l~~ 265 (519)
|+.++.+.+++|+++.+....+. +...+ ...++|++|+.++++..... ++ ..++.|+.++|++
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~~~~i~~~~l~~ 220 (285)
T PF02541_consen 157 PTAEELEKLREFIRKELEELKWE--FPKGGGTIRIIGTSGTIRALYPLKKI-HG-------------KEGYEITREDLEE 220 (285)
T ss_dssp -HHHHHHHHHHHHHHHHCTTHHH--HHHHCHHCEEECCCHHHHHHHHHHHH-TT-------------CSSCEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hhhcCCceeeecHHHHHHHHHHHHHh-cC-------------CCCceECHHHHHH
Confidence 46677788999999999875432 22223 46789999999998876421 11 0158899999999
Q ss_pred HHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhh
Q 010059 266 IVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (519)
Q Consensus 266 l~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~~~l~~ 331 (519)
+++++..++.+ ++.+.+|++++|+|+|+||++|+.++|+.+++++++||+.|||||++++++.+
T Consensus 221 ~~~~l~~~~~e--e~~~~~gl~~~Ra~~i~~g~~i~~~l~~~~~~~~i~vs~~glreG~l~~~l~~ 284 (285)
T PF02541_consen 221 LLEKLSKMSPE--ERAKIPGLSPDRADIILPGALILKALLEAFGAEEIIVSDYGLREGLLYDMLLK 284 (285)
T ss_dssp HHHHHHTSSHH--HHHTSTTSHHCHHTTHHHHHHHHHHHHHHHTHSEEEEESEEHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHccCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHhcc
Confidence 99999999988 99999999999999999999999999999999999999999999999998865
No 6
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.68 E-value=2.1e-15 Score=150.39 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=122.6
Q ss_pred ccccccCCCceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHc-
Q 010059 4 NTSYMQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH- 82 (519)
Q Consensus 4 ~~~~~~~~~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~- 82 (519)
+|+-.+-..+++++|||||||+|++|++... ..+...+..+..+|.|. +.+ ++++.++|+.|++.++.+
T Consensus 15 ~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~-~~~~~~~~~~~~vr~G~-i~d--------i~~a~~~i~~~~~~ae~~~ 84 (267)
T PRK15080 15 NKTPVATESPLKVGVDLGTANIVLAVLDEDG-QPVAGALEWADVVRDGI-VVD--------FIGAVTIVRRLKATLEEKL 84 (267)
T ss_pred cCCCCCCCCCEEEEEEccCceEEEEEEcCCC-CEEEEEeccccccCCCE-Eee--------HHHHHHHHHHHHHHHHHHh
Confidence 4544444567899999999999999997653 35778888888999988 333 999999999999999887
Q ss_pred CCCCccEEEEEehhhhhcC---ChHHHHHHHHHHhCCceE-eeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEE
Q 010059 83 NISRDHTRAVATAAVRAAE---NKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (519)
Q Consensus 83 ~v~~~~i~~vATsA~R~A~---N~~~f~~~i~~~tG~~i~-iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~ 158 (519)
|++ +..|+| +++.+. |+..+. ++.++.|+++. ++++. .|--.++ ... ..+++|||||+|+++
T Consensus 85 g~~---i~~v~~-~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~-~A~a~~~------~~~--~~~vvDIGggtt~i~ 150 (267)
T PRK15080 85 GRE---LTHAAT-AIPPGTSEGDPRAII-NVVESAGLEVTHVLDEP-TAAAAVL------GID--NGAVVDIGGGTTGIS 150 (267)
T ss_pred CCC---cCeEEE-EeCCCCCchhHHHHH-HHHHHcCCceEEEechH-HHHHHHh------CCC--CcEEEEeCCCcEEEE
Confidence 774 666777 788877 888877 66678899999 56544 4433222 111 269999999999999
Q ss_pred EeeCCeEeeeeeeehhHHHHHHhh
Q 010059 159 IGKRGKVVFCESVNLGHVSLSEKF 182 (519)
Q Consensus 159 ~~~~~~~~~~~SlplG~vrl~e~f 182 (519)
++.+|++.+..++|+|.-.+++..
T Consensus 151 v~~~g~~~~~~~~~~GG~~it~~I 174 (267)
T PRK15080 151 ILKDGKVVYSADEPTGGTHMSLVL 174 (267)
T ss_pred EEECCeEEEEecccCchHHHHHHH
Confidence 999999999999999999999865
No 7
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=99.02 E-value=2.2e-09 Score=114.61 Aligned_cols=149 Identities=25% Similarity=0.308 Sum_probs=89.5
Q ss_pred ceEEEEEecccceeeeEEEEeC--CCCEEEEEeeee---e-eeccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHcCCC
Q 010059 13 TLFASIDMGTSSFKLLIIRAYP--NGKFLTIDTLKQ---P-VILGRDLSSSCSISTQSQARSVESLLMF-RDIIQSHNIS 85 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~--~~~~~~i~~~k~---~-vrLg~~~~~~g~ls~e~i~~~~~~L~~f-~~~~~~~~v~ 85 (519)
+...|||.||...|+-||+... .....++...+. . .....|+..- .-+++.+...++-|-.+ ++.+..-..+
T Consensus 8 ~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~-~~~~~~~~~~l~~ll~~a~~~ip~~~~~ 86 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSF-ADNPEKAAESLQPLLDFAKSVIPKSQHS 86 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHH-TTTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHh-CCChHHHHHHHHHHHHHHHhhCCHHHhC
Confidence 3568999999999999999853 222333322222 1 1112222110 01224444444444444 3333222222
Q ss_pred CccEEEEEehhhhhc--CChHHHHHHHHHH----hCCc-----eEeeChHHHHHHHHhhhhccCC---CC------CCce
Q 010059 86 RDHTRAVATAAVRAA--ENKDEFVECVREK----VGFE-----VDVLTGEQEAKFVYMGVLQFLP---VF------DRLV 145 (519)
Q Consensus 86 ~~~i~~vATsA~R~A--~N~~~f~~~i~~~----tG~~-----i~iIsg~eEA~l~~~gv~~~~~---~~------~~~~ 145 (519)
...|...||+.||.- .+++.+++.+++. +++. ++||||+|||.|.|++|..-+. .. ....
T Consensus 87 ~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~ 166 (434)
T PF01150_consen 87 STPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTV 166 (434)
T ss_dssp HEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-E
T ss_pred CeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceE
Confidence 245899999999964 5678888888863 3433 7999999999999999975432 11 2447
Q ss_pred EEEEECCCceEEEEeeC
Q 010059 146 LSVDIGGGSTEFVIGKR 162 (519)
Q Consensus 146 lv~DIGGGStEl~~~~~ 162 (519)
-++|+|||||+|++.-+
T Consensus 167 g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 167 GALDLGGASTQIAFEPS 183 (434)
T ss_dssp EEEEE-SSEEEEEEEET
T ss_pred EEEecCCcceeeeeccC
Confidence 89999999999997665
No 8
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.77 E-value=5.9e-07 Score=88.23 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=89.5
Q ss_pred EEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCccEEEEEehh
Q 010059 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDHTRAVATAA 96 (519)
Q Consensus 18 IDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~-~~v~~~~i~~vATsA 96 (519)
|||||+||++++.+.+ ++.+-... +=.+-..+|.|.+ ++.+-..|+.+++.++. .|.+..+ .+++..+
T Consensus 2 ~dig~~~ik~v~~~~~-~~~~~~~~-------~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~~~~~-vvisVP~ 70 (239)
T TIGR02529 2 VDLGTANIVIVVLDED-GQPVAGVM-------QFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGIELTH-AATAIPP 70 (239)
T ss_pred CCcccceEEEEEEecC-CCEEEEEe-------cccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCCCcCc-EEEEECC
Confidence 7999999999998775 34222211 2233344455443 33344555555554432 3443222 2344333
Q ss_pred hhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHH
Q 010059 97 VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (519)
Q Consensus 97 ~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~v 176 (519)
-=...+++.+.+. -+..|+++..+.-+-=|--.+++ + ...+++|||||+|.++++++|++.+..++|+|.-
T Consensus 71 ~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~~~~----~----~~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~ 141 (239)
T TIGR02529 71 GTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAAVLQ----I----KNGAVVDVGGGTTGISILKKGKVIYSADEPTGGT 141 (239)
T ss_pred CCCcccHHHHHHH-HHHcCCceEEEeehHHHHHHHhc----C----CCcEEEEeCCCcEEEEEEECCeEEEEEeeecchH
Confidence 2223344455544 45579988766555444333222 1 1259999999999999999999999999999999
Q ss_pred HHHHhhc
Q 010059 177 SLSEKFG 183 (519)
Q Consensus 177 rl~e~f~ 183 (519)
.+++.+.
T Consensus 142 ~it~~Ia 148 (239)
T TIGR02529 142 HMSLVLA 148 (239)
T ss_pred HHHHHHH
Confidence 9998764
No 9
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.63 E-value=2e-07 Score=97.01 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=101.1
Q ss_pred ceEEEEEecccceeeeEEEEeC-CCC--EEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHH-H-H-HcCCCC
Q 010059 13 TLFASIDMGTSSFKLLIIRAYP-NGK--FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI-I-Q-SHNISR 86 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~-~~~--~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~-~-~-~~~v~~ 86 (519)
+.=.|||-||...|+-||.... .|. ..++...-..-.++-|+.+-+. .++.....+.-|-+|++- + + .++=
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~-nP~~a~~~l~pLlefA~~~IPk~~h~~-- 85 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFAD-NPEGASVYLTPLLEFAKEHIPKEKHKE-- 85 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhcc-ChhhhHHHHHHHHHHHHhhCCHhhcCC--
Confidence 3447899999999999998754 333 2222221112234445443222 345555555555555542 1 2 2232
Q ss_pred ccEEEEEehhhhhc--CChHHHHHHHHHHh----CCc-----eEeeChHHHHHHHHhhhhccCC---C------CCCceE
Q 010059 87 DHTRAVATAAVRAA--ENKDEFVECVREKV----GFE-----VDVLTGEQEAKFVYMGVLQFLP---V------FDRLVL 146 (519)
Q Consensus 87 ~~i~~vATsA~R~A--~N~~~f~~~i~~~t----G~~-----i~iIsg~eEA~l~~~gv~~~~~---~------~~~~~l 146 (519)
..++..|||.||-- .+.+.+++-+..-+ ++. ++||||+||+.|+|.++...+. . ..+.+-
T Consensus 86 Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G 165 (501)
T KOG1386|consen 86 TPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFG 165 (501)
T ss_pred CCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceee
Confidence 35899999999975 67777777766543 332 8999999999999999975331 1 234578
Q ss_pred EEEECCCceEEEEeeCCe-----Eeeeeeeehh
Q 010059 147 SVDIGGGSTEFVIGKRGK-----VVFCESVNLG 174 (519)
Q Consensus 147 v~DIGGGStEl~~~~~~~-----~~~~~SlplG 174 (519)
++|+||.||+|+..-..+ ......+.+|
T Consensus 166 ~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G 198 (501)
T KOG1386|consen 166 ALDLGGASTQITFEPPNQQEEVPKENLQTINYG 198 (501)
T ss_pred eEecCCceeEEEEecCccccccchhhhhheecC
Confidence 999999999999765422 1234556677
No 10
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.57 E-value=1.6e-07 Score=95.65 Aligned_cols=149 Identities=20% Similarity=0.198 Sum_probs=93.0
Q ss_pred CceEEEEEecccceeeeEEEEeCC--CC-EEEEEeeeeeeeccCCCCcCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPN--GK-FLTIDTLKQPVILGRDLSSSC-SISTQSQARSVESLLMFRDIIQSHNISRD 87 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~--~~-~~~i~~~k~~vrLg~~~~~~g-~ls~e~i~~~~~~L~~f~~~~~~~~v~~~ 87 (519)
.+...+||-||...|+.||..+.. +. +++-++.-.++.=|-..+.+. +=..+.++.+++.-+.|.=. +....+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~-~~~~kT-- 142 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPR-EHWKKT-- 142 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCH-hHhccC--
Confidence 346689999999999999998753 22 222111112222233333221 11122333333333332210 112333
Q ss_pred cEEEEEehhhhhc--CChHHHHHHHHHHhC---------CceEeeChHHHHHHHHhhhhccC---CCC-CCceEEEEECC
Q 010059 88 HTRAVATAAVRAA--ENKDEFVECVREKVG---------FEVDVLTGEQEAKFVYMGVLQFL---PVF-DRLVLSVDIGG 152 (519)
Q Consensus 88 ~i~~vATsA~R~A--~N~~~f~~~i~~~tG---------~~i~iIsg~eEA~l~~~gv~~~~---~~~-~~~~lv~DIGG 152 (519)
-|.+-||+.+|-- .-++.+++.|++.+- =.|.|++|.+|+-|.|.-+...+ .-+ .+.+-++|+||
T Consensus 143 Pi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGG 222 (453)
T KOG1385|consen 143 PIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGG 222 (453)
T ss_pred ceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCC
Confidence 4888999999975 456789999998764 23889999999999999886433 211 34589999999
Q ss_pred CceEEEEeeCC
Q 010059 153 GSTEFVIGKRG 163 (519)
Q Consensus 153 GStEl~~~~~~ 163 (519)
|||++++.-..
T Consensus 223 GSTQi~f~p~~ 233 (453)
T KOG1385|consen 223 GSTQITFLPTF 233 (453)
T ss_pred ceEEEEEecCc
Confidence 99999987543
No 11
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=98.43 E-value=5.1e-08 Score=84.16 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCC-------------chhhhhHHH
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-------------GYHKQSCHI 427 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~-------------~h~~Hs~yi 427 (519)
+|+.+|+.+|..+++.+.. +.++.++.+||+|||||+...+. .|...|+++
T Consensus 3 ~Hs~~V~~~a~~l~~~~~~----------------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~ 66 (122)
T PF01966_consen 3 EHSLRVAELAERLADRLGL----------------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEI 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTH----------------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC----------------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHH
Confidence 7999999999999986642 24689999999999999999774 688899999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhcc
Q 010059 428 IMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (519)
Q Consensus 428 I~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~ 490 (519)
+.+.....|+. ...++.++++|....+...... .........++.++++||.||.
T Consensus 67 ~~~~~~~~~~~---~~~i~~~i~~H~~~~~~~~~~~-----~~~~~~~~~~~~iv~~aD~l~a 121 (122)
T PF01966_consen 67 LKEFLKELGLP---IEIIANAIRYHHGPWNGEGKPK-----EEDYEPISLEARIVKLADRLDA 121 (122)
T ss_dssp HHHHHHHHCHC---HHHHHHHHHHTTTHHTSHHCHH-----CHSCSTSSHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchH---HHHHHHHHHHhccccccccccc-----ccCCCCCCHHHHHHHHHHHHhC
Confidence 98875223334 7789999999987554311111 1112234457889999999873
No 12
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.40 E-value=1.2e-05 Score=85.72 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=37.4
Q ss_pred CceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhhc
Q 010059 143 RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (519)
Q Consensus 143 ~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (519)
...+++|||||+|+++++.+|.+.++.++|+|.-.+++...
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa 244 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIA 244 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHH
Confidence 45899999999999999999999999999999998888653
No 13
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.15 E-value=9.8e-05 Score=77.36 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=93.6
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCccEEEEE
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDHTRAVA 93 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~-~~v~~~~i~~vA 93 (519)
+++|||||.++++++.+...++.++++.....+.+ + ..+|.+-+ ++.+.+++++..+.++. .+++..++ ++|
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~---g-i~~G~I~d--~~~~~~~i~~al~~~e~~~~~~i~~v-~~~ 74 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR---G-IKKGVIND--IEAAVGSIQRAIEAAELMAGCEIRSV-IVS 74 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC---C-ccCcEEEc--HHHHHHHHHHHHHHHHHHhCCcccEE-EEE
Confidence 68999999999999999875566888776665533 4 33565554 33344444444433321 34443222 222
Q ss_pred e--hhhhh---------c---CChHHHHHHHHHHh-------------------------------------CCceEeeC
Q 010059 94 T--AAVRA---------A---ENKDEFVECVREKV-------------------------------------GFEVDVLT 122 (519)
Q Consensus 94 T--sA~R~---------A---~N~~~f~~~i~~~t-------------------------------------G~~i~iIs 122 (519)
. ..++- . -+.+++-+.++... ..++.++.
T Consensus 75 v~g~~v~~~~~~~~i~~~~~~i~~~di~~~~~~~~~~~~~~~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~lva 154 (371)
T TIGR01174 75 ISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIIT 154 (371)
T ss_pred EcccceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhcccCCCCCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEEEE
Confidence 1 11110 0 22333333333221 11233444
Q ss_pred hHHHHHHHHhhhhc-------------------cC-C-CCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHh
Q 010059 123 GEQEAKFVYMGVLQ-------------------FL-P-VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (519)
Q Consensus 123 g~eEA~l~~~gv~~-------------------~~-~-~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (519)
...+.-..+.-+.. .+ + ..+...+++|||||+|.++++.+|.+.+..++|+|.-.+++.
T Consensus 155 ~~~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~ 234 (371)
T TIGR01174 155 GSSTILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKD 234 (371)
T ss_pred EEHHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHH
Confidence 44444433333321 01 1 112358999999999999999999999999999999988876
Q ss_pred h
Q 010059 182 F 182 (519)
Q Consensus 182 f 182 (519)
.
T Consensus 235 i 235 (371)
T TIGR01174 235 I 235 (371)
T ss_pred H
Confidence 4
No 14
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.09 E-value=0.00091 Score=69.30 Aligned_cols=162 Identities=20% Similarity=0.268 Sum_probs=92.2
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccE-EE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT-RA 91 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i-~~ 91 (519)
+.+..|||||+++|++..+.. ++.++++.....++. .+...+|.+.+ ++.+.++|+...+ ..+++..++ .+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~-~~~~~v~~~~~~~~p--~~~i~~g~i~d--~~~~~~~l~~~~~---~~~~~~k~v~~a 74 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRS-GDRYKLEHYAVEPLP--AGIFTEGHIVE--YQAVAEALKELLS---ELGINTKKAATA 74 (348)
T ss_pred CcEEEEEeccCeEEEEEEEec-CCceEEEEEEEEECC--CCcccCCCccC--HHHHHHHHHHHHH---HcCCCcceEEEE
Confidence 457899999999999988754 567777765555532 33344554432 3344455555443 234432222 12
Q ss_pred EEehh-----hhh--cCChHHHHHHHH---------------------------------------------------HH
Q 010059 92 VATAA-----VRA--AENKDEFVECVR---------------------------------------------------EK 113 (519)
Q Consensus 92 vATsA-----~R~--A~N~~~f~~~i~---------------------------------------------------~~ 113 (519)
+.++. +.- .-+.+++-+.|+ +.
T Consensus 75 lp~~~~~~r~~~~p~~i~~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~a~~~~~v~~~~~~~~~ 154 (348)
T TIGR01175 75 VPGSAVITKVIPVPAGLDERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLAATRKEVVDSRLHALKL 154 (348)
T ss_pred ecCCeeEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEEEecHHHHHHHHHHHHH
Confidence 11111 000 012233333332 22
Q ss_pred hCCceEeeChHHHHHHHHhhhhc-cCC-C-CCC-ceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhh
Q 010059 114 VGFEVDVLTGEQEAKFVYMGVLQ-FLP-V-FDR-LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (519)
Q Consensus 114 tG~~i~iIsg~eEA~l~~~gv~~-~~~-~-~~~-~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (519)
.|+++..|+-+-=|....+.+.. .+. . .+. +.+++|||+++|.++++++|++.+..++|+|.-.+++..
T Consensus 155 aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i 227 (348)
T TIGR01175 155 AGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSEL 227 (348)
T ss_pred cCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHH
Confidence 34444444443333333332111 111 1 122 389999999999999999999999999999999988765
No 15
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.07 E-value=7.1e-05 Score=78.67 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=37.5
Q ss_pred ceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhhc
Q 010059 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (519)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (519)
.++++|||||+|.++.+.+|.+.+..++|+|.-.+|+..-
T Consensus 204 Gv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa 243 (418)
T COG0849 204 GVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIA 243 (418)
T ss_pred CeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHH
Confidence 5899999999999999999999999999999999998653
No 16
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.97 E-value=1.6e-05 Score=69.45 Aligned_cols=112 Identities=21% Similarity=0.152 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcccc-----------CCCchhhhhHHHHH
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT-----------SKKGYHKQSCHIIM 429 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I-----------~~~~h~~Hs~yiI~ 429 (519)
.|+..|+.++..+++.... ++.++..+.+||+|||+|... ....|..+++.++.
T Consensus 5 ~Hs~~v~~~~~~~~~~~~~---------------~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 5 EHSLRVAQLARRLAEELGL---------------SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHHHHHhCc---------------CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 7999999999988875431 223578899999999999986 46788889999987
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccC
Q 010059 430 NGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (519)
Q Consensus 430 ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~ 493 (519)
+.. ..+..+....++..+..+|....+........ .-.....++.++++|+.++....
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~AD~~~~~~~ 127 (145)
T cd00077 70 ELL-LEEVIKLIDELILAVDASHHERLDGLGYPDGL-----KGEEITLEARIVKLADRLDALRR 127 (145)
T ss_pred Hhh-hcccccccHHHHHHHHHHcccCCCCCCCCCCC-----CcccCCHHHHHHHHHHHHHHHhc
Confidence 643 45555555566666554555444332211111 11223458889999999887654
No 17
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.91 E-value=2.8e-05 Score=66.35 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCC----------CchhhhhHHHHHc
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK----------KGYHKQSCHIIMN 430 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~----------~~h~~Hs~yiI~n 430 (519)
+|+..|+.++..+.+++.. .++..+.+||+|||+|+...+ ..|..++++++.+
T Consensus 7 ~H~~~v~~~~~~l~~~~~~-----------------~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 69 (124)
T smart00471 7 EHSLRVAQLAAALAEELGL-----------------LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE 69 (124)
T ss_pred HHHHHHHHHHHHHHHHcCh-----------------HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh
Confidence 7999999999988876531 135678999999999999985 7899999999977
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccC
Q 010059 431 GDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (519)
Q Consensus 431 s~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~ 493 (519)
.++++........+++||...... ... .....++.++++|+.++..+.
T Consensus 70 ----~~~~~~~~~~~~~~i~~h~~~~~~--------~~~---~~~~~~~~il~~aD~~~~~~~ 117 (124)
T smart00471 70 ----EEEPRILEEILATAILSHHERPDG--------LRG---EPITLEARIVKVADRLDALRR 117 (124)
T ss_pred ----CCCCHHHHHHHhhHHHHhccccCC--------CCC---CcCCHHHHHHHHHHHHHHHhc
Confidence 467888888877788998865432 000 112347889999999887653
No 18
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.59 E-value=0.0003 Score=65.03 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=71.1
Q ss_pred HHHHhcCccc-chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCC-CchhhhhHHH
Q 010059 350 LAMRFNNKKR-VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-KGYHKQSCHI 427 (519)
Q Consensus 350 ~~~ry~~~~~-~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~-~~h~~Hs~yi 427 (519)
+.++|..+.. ..|+.+|+.+|..|-..+.. .+ .+.+..++.+||+|||||+...+ ..|..-++.+
T Consensus 4 ll~~~~~~~~~~~Hs~~Va~~A~~ia~~~~~-~~------------~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~i 70 (164)
T TIGR00295 4 LLDKYKCDESVRRHCLAVARVAMELAENIRK-KG------------HEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEI 70 (164)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHhcc-cc------------ccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHH
Confidence 4455554431 26999999999988765531 11 11256789999999999998765 4688899998
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhcc
Q 010059 428 IMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (519)
Q Consensus 428 I~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~ 490 (519)
+.+. ||+.. ++..+.+++....|......+ .+++.+.......+.|+.+||.|..
T Consensus 71 L~~~----g~~~~---i~~iI~~H~~~g~p~~~~~~~-~l~~~~~~p~t~ea~IV~~AD~l~~ 125 (164)
T TIGR00295 71 LRKE----GVDEK---IVRIAERHFGAGINAEEASKL-GLPPKDYMPETLEEKIVAHADNLIM 125 (164)
T ss_pred HHHc----CCCHH---HHHHHHHHhCCCCchhhHhhc-CCCcccCCCCCHHHHHHHHHHHhcc
Confidence 8754 55532 222233444444342111111 2222221112246779999999964
No 19
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.52 E-value=0.0018 Score=66.28 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEE-EEehhhhhcCChHHHHHHHHHHhC-CceEeeChHHHHHHHHhh
Q 010059 57 SCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRA-VATAAVRAAENKDEFVECVREKVG-FEVDVLTGEQEAKFVYMG 133 (519)
Q Consensus 57 ~g~ls~e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~-vATsA~R~A~N~~~f~~~i~~~tG-~~i~iIsg~eEA~l~~~g 133 (519)
+|.|++ .+.+-.-|+.|.+.+... .+. +.++ ++.-+==..-.++.+.+.++. .| -+|.+|+.. ....+|
T Consensus 65 ~GvI~D--~~~~~~~l~~~l~k~~~~~~~~--~p~vvi~vP~~~T~verrA~~~a~~~-aGa~~V~li~ep---~AaAiG 136 (326)
T PF06723_consen 65 DGVIAD--YEAAEEMLRYFLKKALGRRSFF--RPRVVICVPSGITEVERRALIDAARQ-AGARKVYLIEEP---IAAAIG 136 (326)
T ss_dssp TTEESS--HHHHHHHHHHHHHHHHTSS-SS----EEEEEE-SS--HHHHHHHHHHHHH-TT-SEEEEEEHH---HHHHHH
T ss_pred CCcccC--HHHHHHHHHHHHHHhccCCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecch---HHHHhc
Confidence 455653 344445677777666543 222 2222 322111112244567777764 56 578888765 444445
Q ss_pred hhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHh
Q 010059 134 VLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (519)
Q Consensus 134 v~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (519)
+--.... ....+++|||||+||+++..-|.++.+.|+++|.-.+.+.
T Consensus 137 aGl~i~~-~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~Dea 183 (326)
T PF06723_consen 137 AGLDIFE-PRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEA 183 (326)
T ss_dssp TT--TTS-SS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred CCCCCCC-CCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHH
Confidence 4332222 2347999999999999999999999999999999877664
No 20
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.39 E-value=0.0016 Score=63.30 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCchhhhh
Q 010059 345 RSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQS 424 (519)
Q Consensus 345 ~s~~~~~~ry~~~~~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~h~~Hs 424 (519)
+.+..+++....+.+..|+.+|..+|..|-.+-.+-++ -+.++|.+||+|||||..--+.+..+.+
T Consensus 42 ~~a~~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~--------------~D~evl~lAALLHDIG~~~~~~~~~~~~ 107 (228)
T TIGR03401 42 KFAQEYAKARLPPETYNHSLRVYYYGLAIARDQFPEWD--------------LSDETWFLTCLLHDIGTTDENMTATKMS 107 (228)
T ss_pred HHHHHHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccC--------------CCHHHHHHHHHHHhhccccccCCcccCC
Confidence 34445554443334458999999999866432111122 2457899999999999843332212222
Q ss_pred H---------HHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhcc
Q 010059 425 C---------HIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (519)
Q Consensus 425 ~---------yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~ 490 (519)
| .++... .|++..+...|..++..|+.. ..... . ..++.||..|+.||.
T Consensus 108 fe~~ga~~A~~~L~~~---~G~~~~~~~~V~~aI~~H~~~--~~~~~----~--------~~e~~lvq~Ad~lDa 165 (228)
T TIGR03401 108 FEFYGGILALDVLKEQ---TGANQDQAEAVAEAIIRHQDL--GVDGT----I--------TTLGQLLQLATIFDN 165 (228)
T ss_pred HHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHhCC--CCCCC----c--------CHHHHHHHHHHHHhH
Confidence 2 233322 399999999999999888642 21111 1 226789999998885
No 21
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.33 E-value=0.0028 Score=66.98 Aligned_cols=155 Identities=21% Similarity=0.300 Sum_probs=89.8
Q ss_pred eEEEEEecccceeeeEEEEeCC---C-----CEEEEEeeeeeeeccC----CCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010059 14 LFASIDMGTSSFKLLIIRAYPN---G-----KFLTIDTLKQPVILGR----DLSSSCSISTQSQARSVESLLMFRDIIQS 81 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~---~-----~~~~i~~~k~~vrLg~----~~~~~g~ls~e~i~~~~~~L~~f~~~~~~ 81 (519)
+-.-|||||.+..|++.++.-. + .+.++++ +.+-=++ -+.+...|..+++.+.++. +|++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dk--ev~yrS~i~fTPl~~~~~ID~~~i~~~V~~--ey~~---- 78 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDK--EIIYRSPIYFTPLLKQGEIDEAAIKELIEE--EYQK---- 78 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeee--EEEEecCceecCCCCCccccHHHHHHHHHH--HHHH----
Confidence 3478999999999999886521 1 2344432 2221111 1224467888888776653 3332
Q ss_pred cCCCCccEEE---EEehhhhhcCChHHHHHHHHHH--------hCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEE
Q 010059 82 HNISRDHTRA---VATAAVRAAENKDEFVECVREK--------VGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDI 150 (519)
Q Consensus 82 ~~v~~~~i~~---vATsA~R~A~N~~~f~~~i~~~--------tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DI 150 (519)
-|+.+++|.+ +-|...-...|....+++.-.. .|++++=+ =.++=+-.++.+. ..+...+++||
T Consensus 79 Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i---va~~ASg~avLse--Eke~gVa~IDI 153 (475)
T PRK10719 79 AGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI---IAGKGAGAQTLSE--ERNTRVLNIDI 153 (475)
T ss_pred cCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh---hhHHHhhHHHhhh--hccCceEEEEe
Confidence 2443333221 1222222235666666653322 34444321 1122222222221 22345899999
Q ss_pred CCCceEEEEeeCCeEeeeeeeehhHHHHHHh
Q 010059 151 GGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (519)
Q Consensus 151 GGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (519)
|||+|.++++++|++.++.++|+|.-.++..
T Consensus 154 GgGTT~iaVf~~G~l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 154 GGGTANYALFDAGKVIDTACLNVGGRLIETD 184 (475)
T ss_pred CCCceEEEEEECCEEEEEEEEecccceEEEC
Confidence 9999999999999999999999999887764
No 22
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.31 E-value=0.0038 Score=64.61 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.1
Q ss_pred ceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhhc
Q 010059 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (519)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (519)
..+++|||..+|+++++++|++.++.++++|.-.+++...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHH
Confidence 4799999999999999999999999999999999998654
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.26 E-value=0.0069 Score=62.54 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhh
Q 010059 57 SCSIST-QSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMG 133 (519)
Q Consensus 57 ~g~ls~-e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~g 133 (519)
+|.+.+ +.+++.+ +.+.+.++.. ... .-+++-|--.---.+.+..+....+..|+++ .+++...=|-+.| |
T Consensus 67 ~G~i~d~~~~~~~l---~~~~~~~~~~~~~~--~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~-g 140 (336)
T PRK13928 67 DGVIADYDVTEKML---KYFINKACGKRFFS--KPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA-G 140 (336)
T ss_pred CCeEecHHHHHHHH---HHHHHHHhccCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc-C
Confidence 466644 4454444 4443333322 121 2234444333333456778888888889885 4555554444432 2
Q ss_pred hhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhh
Q 010059 134 VLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (519)
Q Consensus 134 v~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (519)
. ... ....++|+|+|||+|+++++..+.+....++++|.-.+++..
T Consensus 141 ~--~~~-~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i 186 (336)
T PRK13928 141 L--DIS-QPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAI 186 (336)
T ss_pred C--ccc-CCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHH
Confidence 2 222 123489999999999999999998888889999998887754
No 24
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.15 E-value=0.0078 Score=63.71 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=99.0
Q ss_pred EEEEEecccceeeeEEEEeC---CC-----CEEEEEeeeeeeeccC----CCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 010059 15 FASIDMGTSSFKLLIIRAYP---NG-----KFLTIDTLKQPVILGR----DLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~---~~-----~~~~i~~~k~~vrLg~----~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~ 82 (519)
-.-|||||.+..|++.++.= .+ .+.+++ |+.+-=+. -+.+...|..+++.+.++ ++|++ -
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d--keViYrS~I~fTPl~~~~~ID~~al~~iv~--~eY~~----A 76 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD--KEVIYRSPIYFTPLLSQTEIDAEALKEIVE--EEYRK----A 76 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEec--cEEEecCCccccCCCCCCccCHHHHHHHHH--HHHHH----c
Confidence 36899999999999987541 11 233333 33322121 122346788888776654 33433 3
Q ss_pred CCCCccEE----EEEehhhhhcCChHHHHHHHHHHhCCceE-eeChHHHHHHHHhhhhcc-CC-CCCCceEEEEECCCce
Q 010059 83 NISRDHTR----AVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQF-LP-VFDRLVLSVDIGGGST 155 (519)
Q Consensus 83 ~v~~~~i~----~vATsA~R~A~N~~~f~~~i~~~tG~~i~-iIsg~eEA~l~~~gv~~~-~~-~~~~~~lv~DIGGGSt 155 (519)
|+.+++|. .+.-++.|. +|++++++.+....|-=|= .=--.=|+-+...|.-.. +. ......+=+|||||.|
T Consensus 77 gi~p~~I~TGAVIITGETArK-eNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTt 155 (473)
T PF06277_consen 77 GITPEDIDTGAVIITGETARK-ENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTT 155 (473)
T ss_pred CCCHHHCccccEEEecchhhh-hhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCce
Confidence 66554432 233345555 7999999999998874333 333456888888776432 11 1234578899999999
Q ss_pred EEEEeeCCeEeeeeeeehhH
Q 010059 156 EFVIGKRGKVVFCESVNLGH 175 (519)
Q Consensus 156 El~~~~~~~~~~~~SlplG~ 175 (519)
-+++|++|++.....|.+|.
T Consensus 156 N~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 156 NIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred eEEEEECCEEEEEEEEeecc
Confidence 99999999999999999996
No 25
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=97.04 E-value=0.014 Score=60.34 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHH-HcCCCCcc-EEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHh
Q 010059 57 SCSIS-TQSQARSVESLLMFRDIIQ-SHNISRDH-TRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYM 132 (519)
Q Consensus 57 ~g~ls-~e~i~~~~~~L~~f~~~~~-~~~v~~~~-i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~ 132 (519)
+|.+. .+.++. .|+.+...+. ..+.+..+ -.+++..+.-...+++.+.+ .-+..|+++ .+++..-=|-+.|
T Consensus 68 ~G~I~d~d~~~~---~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~- 142 (335)
T PRK13929 68 DGVIADYDMTTD---LLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA- 142 (335)
T ss_pred CCccCCHHHHHH---HHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc-
Confidence 45543 344443 4444444332 34553221 12333333333344555555 556679885 5555554444332
Q ss_pred hhhccCCC-CCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhh
Q 010059 133 GVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (519)
Q Consensus 133 gv~~~~~~-~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (519)
| ++. ....++|+|+|||+|+++.+..+.+....++++|.-.+++..
T Consensus 143 g----~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l 189 (335)
T PRK13929 143 D----LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDI 189 (335)
T ss_pred C----CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHH
Confidence 2 221 123589999999999999998788888899999998887643
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=96.95 E-value=0.014 Score=60.17 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeee
Q 010059 90 RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (519)
Q Consensus 90 ~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (519)
.+|.|...---+..++.+.++.+..|++. .+++.. ....++...... ....++|+|+|||.|+++.+..|.+...
T Consensus 102 ~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep---~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~~~ 177 (335)
T PRK13930 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEP---MAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIVYS 177 (335)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccH---HHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEEee
Confidence 34555443333344555666677788875 444433 333323221111 1234799999999999999999999888
Q ss_pred eeeehhHHHHHHhh
Q 010059 169 ESVNLGHVSLSEKF 182 (519)
Q Consensus 169 ~SlplG~vrl~e~f 182 (519)
...++|...+++..
T Consensus 178 ~~~~lGG~~id~~l 191 (335)
T PRK13930 178 ESIRVAGDEMDEAI 191 (335)
T ss_pred cCcCchhHHHHHHH
Confidence 89999998888764
No 27
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.90 E-value=0.0045 Score=63.36 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCcc-cchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCC-chhhh
Q 010059 346 SVVRLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-GYHKQ 423 (519)
Q Consensus 346 s~~~~~~ry~~~~-~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~-~h~~H 423 (519)
.+.++..+|..+. ...|+.+|+++|..|-+++ + -+..++.+||+|||||..-.+. +|..-
T Consensus 174 e~l~Ll~k~~~~e~l~~Hs~rVa~lA~~LA~~~----~--------------~D~~ll~aAALLHDIGK~k~~~~~H~~~ 235 (339)
T PRK12703 174 QCLDLLKKYGASDLLIRHVKTVYKLAMRIADCI----N--------------ADRRLVAAGALLHDIGRTKTNGIDHAVA 235 (339)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHc----C--------------CCHHHHHHHHHHHhcccccccCCCHHHH
Confidence 3455666665442 1279999999998775432 2 1357889999999999987754 67777
Q ss_pred hHHHHHcCCCCCCCCHHHHHHHHHHHHhccC-CCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhcccc
Q 010059 424 SCHIIMNGDHLYGYSTDEIKLIALLTRFHRK-KFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (519)
Q Consensus 424 s~yiI~ns~~l~G~s~~E~~~iA~iaryh~k-~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~ 492 (519)
++.++... ||+.. ++.++..|.+ ..+.. +.....|++.+..-...-+.|+..||.|+...
T Consensus 236 Ga~iL~e~----G~~e~----i~~iIe~H~g~G~~~~-~~~~~gL~~~~~~P~TLEakIV~dADrL~~~~ 296 (339)
T PRK12703 236 GAEILRKE----NIDDR----VVSIVERHIGAGITSE-EAQKLGLPVKDYVPETIEEMIVAHADNLFAGD 296 (339)
T ss_pred HHHHHHHC----CCCHH----HHHHHHHHhccCCCcc-hhhccCCccccCCCCCHHHHHHHHHHHHhcCC
Confidence 88777643 56543 3333344443 23321 11111122211111122456899999998654
No 28
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.12 Score=52.22 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=54.5
Q ss_pred HhCCceEeeChHHHHHHHHhhhh-ccCCCCC--CceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhhc
Q 010059 113 KVGFEVDVLTGEQEAKFVYMGVL-QFLPVFD--RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (519)
Q Consensus 113 ~tG~~i~iIsg~eEA~l~~~gv~-~~~~~~~--~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (519)
..|+++.|++=+.=|-+..+... +.+.... -.++++|||+-||++.+..+|++.+....|+|.--|++.+.
T Consensus 160 ~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Qlt~~i~ 233 (354)
T COG4972 160 LAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQEIQ 233 (354)
T ss_pred HcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEeeccCcHHHHHHHHH
Confidence 45888888888887777666632 2222111 12469999999999999999999999999999999988653
No 29
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.69 E-value=0.031 Score=57.57 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=58.1
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeee
Q 010059 90 RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (519)
Q Consensus 90 ~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (519)
.+|-|.-.---++.++.+..+-+..|++. .+++..--|-|.| |. ... ....++|+|+|||+|+++.+..+.+...
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lVvDiG~gttdvs~v~~~~~~~~ 175 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGA-GL--PVE-EPTGSMVVDIGGGTTEVAVISLGGIVVS 175 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhc-CC--ccc-CCceEEEEEcCCCeEEEEEEEeCCEEec
Confidence 34555443333344455666667788874 5666555554433 21 111 2235899999999999999977777777
Q ss_pred eeeehhHHHHHHhh
Q 010059 169 ESVNLGHVSLSEKF 182 (519)
Q Consensus 169 ~SlplG~vrl~e~f 182 (519)
.+.++|.-.+++..
T Consensus 176 ~~~~lGG~did~~l 189 (333)
T TIGR00904 176 RSIRVGGDEFDEAI 189 (333)
T ss_pred CCccchHHHHHHHH
Confidence 78899988887754
No 30
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.67 E-value=0.023 Score=56.10 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=81.7
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+..||+||.|++.++++ + + +++..... +.+. ..+..++++++. +++.+.+..++..++.
T Consensus 2 ~lGIDiGtts~K~vl~d-~--g--~il~~~~~---------~~~~----~~~~~~~~l~~~---~~~~~~~~~~i~~i~~ 60 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-D--G--KVIGYKWL---------DTTP----VIEETARAILEA---LKEAGIGLEPIDKIVA 60 (248)
T ss_pred EEEEEcChhheEEEEEc-C--C--EEEEEEEe---------cCCC----CHHHHHHHHHHH---HHHcCCChhheeEEEE
Confidence 46799999999999995 3 4 34443332 1111 123334444443 4455666556776665
Q ss_pred hhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEe---eeeee
Q 010059 95 AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV---FCESV 171 (519)
Q Consensus 95 sA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~---~~~Sl 171 (519)
+.-+.. ++.. .+ .. ..|.---..|+....|. . -.|+||||..|-++.+++|++. .....
T Consensus 61 Tg~~~~-----~v~~----~~---~~---~~ei~~~~~g~~~~~~~--~-~~vidiGgqd~k~i~~~~g~~~~~~~n~~c 122 (248)
T TIGR00241 61 TGYGRH-----KVGF----AD---KI---VTEISCHGKGANYLAPE--A-RGVIDIGGQDSKVIKIDDGKVDDFTMNDKC 122 (248)
T ss_pred ECCCcc-----cccc----cC---Cc---eEEhhHHHHHHHHHCCC--C-CEEEEecCCeeEEEEECCCcEeeeeecCcc
Confidence 544432 1110 01 11 23555666777776663 2 2699999999999999999877 66667
Q ss_pred ehhHHHHHHhhc
Q 010059 172 NLGHVSLSEKFG 183 (519)
Q Consensus 172 plG~vrl~e~f~ 183 (519)
..|+-++.|...
T Consensus 123 a~Gtg~f~e~~a 134 (248)
T TIGR00241 123 AAGTGRFLEVTA 134 (248)
T ss_pred cccccHHHHHHH
Confidence 889999998764
No 31
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.62 E-value=0.042 Score=56.57 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=57.0
Q ss_pred EEEehhhhhcCChHHHHHHHHHHhCCceE-eeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeee
Q 010059 91 AVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (519)
Q Consensus 91 ~vATsA~R~A~N~~~f~~~i~~~tG~~i~-iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~ 169 (519)
+|-|...---.+.+..+...-+..|++.- +++...-|-+.| |. ... ....++|+|+|||+|+++.+..+.+....
T Consensus 99 ~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lvvDiGggttdvs~v~~~~~~~~~ 174 (334)
T PRK13927 99 VVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA-GL--PVT-EPTGSMVVDIGGGTTEVAVISLGGIVYSK 174 (334)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc-CC--ccc-CCCeEEEEEeCCCeEEEEEEecCCeEeeC
Confidence 34444333334566667777777888754 444443333332 22 111 12347999999999999999777777778
Q ss_pred eeehhHHHHHHhhc
Q 010059 170 SVNLGHVSLSEKFG 183 (519)
Q Consensus 170 SlplG~vrl~e~f~ 183 (519)
+.++|.-.+++.+.
T Consensus 175 ~~~lGG~~id~~l~ 188 (334)
T PRK13927 175 SVRVGGDKFDEAII 188 (334)
T ss_pred CcCChHHHHHHHHH
Confidence 88999988887653
No 32
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.60 E-value=0.0088 Score=47.30 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCC-----CchhhhhHHHHHcCCCCC
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-----KGYHKQSCHIIMNGDHLY 435 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~-----~~h~~Hs~yiI~ns~~l~ 435 (519)
.|+.+|+.+|..+=.. .+ ++ ...+.+||+|||||+...+ .+|...+++++...
T Consensus 7 ~H~~~v~~~a~~la~~----~~-----------~~---~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~---- 64 (80)
T TIGR00277 7 QHSLEVAKLAEALARE----LG-----------LD---VELARRGALLHDIGKPITREGVIFESHAVVGAEIARKY---- 64 (80)
T ss_pred HHHHHHHHHHHHHHHH----cC-----------CC---HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHc----
Confidence 6899999999866432 23 22 3458899999999999874 56788888888643
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 010059 436 GYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 436 G~s~~E~~~iA~iaryh~ 453 (519)
|++. .+..+++||.
T Consensus 65 ~~~~----~~~~~I~~Hh 78 (80)
T TIGR00277 65 GEPL----EVIDIIAEHH 78 (80)
T ss_pred CCCH----HHHHHHHHHc
Confidence 4443 4455556664
No 33
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=96.52 E-value=0.0032 Score=59.62 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=49.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcc-cCcc-hHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q 010059 357 KKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIAS-FEDK-DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429 (519)
Q Consensus 357 ~~~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~-~~~~-~~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ 429 (519)
|..+.||.-|+.-|+.||+-|.... ..++- +... .+.+ ...+.-.+|+|||||..++.++|+.||+++-+
T Consensus 56 DHG~vHa~Iva~~Al~i~~lL~~~G-v~ps~--v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~ 127 (269)
T COG3294 56 DHGPVHARIVANSALAIYKLLLEKG-VKPSG--VTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLAL 127 (269)
T ss_pred CCCceeeeeccchHHHHHHHHHhcC-CCccc--ccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhH
Confidence 5566899999999999999887542 11100 0000 1222 23567789999999999999999999998753
No 34
>PRK12704 phosphodiesterase; Provisional
Probab=96.52 E-value=0.023 Score=62.02 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCC---CchhhhhHHHHHcCCCCCCC
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK---KGYHKQSCHIIMNGDHLYGY 437 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~---~~h~~Hs~yiI~ns~~l~G~ 437 (519)
.|+..|+.+|..|-..+ + ++ ...+..|++|||||+..++ .+|...++.++...+ +
T Consensus 338 ~Hs~~Va~lA~~lA~~l----g-----------ld---~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa~il~~~~----~ 395 (520)
T PRK12704 338 QHSIEVAHLAGLMAAEL----G-----------LD---VKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKYK----E 395 (520)
T ss_pred HHHHHHHHHHHHHHHHh----C-----------cC---HHHHHHHHHHHccCcCccccccCCHHHHHHHHHHHcC----C
Confidence 59999999998665432 3 22 3447799999999998765 468888888887653 3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccCCC
Q 010059 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (519)
Q Consensus 438 s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~~~ 495 (519)
+ ..+..++.+|....+.. ..++.|+.+||+|+..+.+.
T Consensus 396 ~----~~v~~aI~~HHe~~~~~----------------~~~a~IV~~ADaLsa~Rpga 433 (520)
T PRK12704 396 S----PVVINAIAAHHGDEEPT----------------SIEAVLVAAADAISAARPGA 433 (520)
T ss_pred C----HHHHHHHHHcCCCCCCC----------------CHHHHHHHHHHHHhCcCCCC
Confidence 3 34667777777532210 12667888888888776543
No 35
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.48 E-value=0.012 Score=64.07 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCC---chhhhhHHHHHcCCCCCCC
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (519)
.|+..|+.+|..|=..+ + ++ ...+..|++|||||+.+.+. +|..-+++++...+ +
T Consensus 332 ~Hs~~VA~lA~~LA~~l----g-----------ld---~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga~ll~~~~----~ 389 (514)
T TIGR03319 332 QHSIEVAHLAGIMAAEL----G-----------ED---VKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKYK----E 389 (514)
T ss_pred HHHHHHHHHHHHHHHHh----C-----------cC---HHHHHHHHHHHhcCcccchhhcccHHHHHHHHHHHcC----C
Confidence 69999999998665433 3 22 34567899999999986543 67777888886553 3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccCCC
Q 010059 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (519)
Q Consensus 438 s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~~~ 495 (519)
+ ..+...++||....+. ...++.++.+||.|+.++.+.
T Consensus 390 ~----~~V~~aI~~HH~~~~~----------------~~~~a~IV~~AD~lsa~rpga 427 (514)
T TIGR03319 390 S----PEVVNAIAAHHGDVEP----------------TSIEAVLVAAADALSAARPGA 427 (514)
T ss_pred C----HHHHHHHHHhCCCCCC----------------CCHHHHHHHHHHHhcCCCCCC
Confidence 3 3466666676643211 024677888888888766443
No 36
>PRK12705 hypothetical protein; Provisional
Probab=96.41 E-value=0.019 Score=62.10 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCC---chhhhhHHHHHcCCCCCCC
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (519)
.|+..|+.+|..|-..+ + ++ ..+...|++|||||+.+.+. .|..-+++++... ||
T Consensus 326 ~HSl~VA~lA~~LA~~l----G-----------ld---~d~a~~AGLLHDIGK~ie~e~~~~H~~iGaeLlkk~----~~ 383 (508)
T PRK12705 326 SHSLEVAHLAGIIAAEI----G-----------LD---PALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKF----NE 383 (508)
T ss_pred HHHHHHHHHHHHHHHHc----C-----------cC---HHHHHHHHHHHHcCCcchhhhcccHHHHHHHHHHhc----CC
Confidence 59999999998664432 3 22 34566899999999998764 4666688888654 45
Q ss_pred CHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccCCC
Q 010059 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (519)
Q Consensus 438 s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~~~ 495 (519)
++ .+..++.+|....... -..+.|+.+||+|+..+.+.
T Consensus 384 p~----~Vv~aI~~HHe~~~~~----------------~~~a~IVaiADaLSaaRpGa 421 (508)
T PRK12705 384 PD----EVINAIASHHNKVNPE----------------TVYSVLVQIADALSAARPGA 421 (508)
T ss_pred CH----HHHHHHHHhCCCCCCC----------------CHHHHHHHHHHHHcCCCCCC
Confidence 43 3456666666432211 13577899999999877554
No 37
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.36 E-value=0.01 Score=61.59 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCC--------------------Cch
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK--------------------KGY 420 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~--------------------~~h 420 (519)
.|+..|+.+|..|-..+ + +++ ..+.+|++|||||+...+ ..|
T Consensus 199 ~HSl~VA~~A~~LA~~~----g-----------~d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H 260 (342)
T PRK07152 199 KHCLRVAQLAAELAKKN----N-----------LDP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLH 260 (342)
T ss_pred HHHHHHHHHHHHHHHHh----C-----------cCH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHh
Confidence 79999999999775433 3 232 668899999999996532 236
Q ss_pred hhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccC
Q 010059 421 HKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (519)
Q Consensus 421 ~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~ 493 (519)
.+-+++++.+. .||++++ ++..++||..... .+..++.|+.+|+.++..|.
T Consensus 261 ~~~Ga~ll~~~---~~~p~~~---i~~aI~~Hh~~~~----------------~~~~l~~iV~lAD~l~~~R~ 311 (342)
T PRK07152 261 QYVGALWLKHV---YGIDDEE---ILNAIRNHTSLAE----------------EMSTLDKIVYVADKIEPGRK 311 (342)
T ss_pred HHHHHHHHHHH---cCCCcHH---HHHHHHhccCCCC----------------CcCHHHHHHHhhhhcccCCC
Confidence 77777777543 4565433 5666777774211 12348899999999998764
No 38
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=96.10 E-value=0.011 Score=54.77 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHH---HHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcccc----------------CCCchh
Q 010059 361 KAGAQCASIAKDIF---EGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT----------------SKKGYH 421 (519)
Q Consensus 361 ~ha~~V~~~a~~lf---d~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I----------------~~~~h~ 421 (519)
.|...|+..|..|. +.+... ++...+.++.+||+|||||++- ...+|.
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~ 69 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADL-------------IGKLLRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHS 69 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH-------------HhhHHHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHH
Confidence 58888888887764 112211 2224578999999999999963 234566
Q ss_pred hhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCC
Q 010059 422 KQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPR 458 (519)
Q Consensus 422 ~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~ 458 (519)
.-|.+++...-.-.|+......+++.++.+|.+..+.
T Consensus 70 ~~s~~~~~~~~~~~~~~~~~~~~~~~~I~~HHg~~~~ 106 (177)
T TIGR01596 70 LLSAKLLDALLIKKGYEEEVFKLLALAVIGHHGGLSN 106 (177)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCchh
Confidence 6777776532102577888888999999888877654
No 39
>PRK00106 hypothetical protein; Provisional
Probab=95.93 E-value=0.041 Score=59.87 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCC---chhhhhHHHHHcCCCCCC
Q 010059 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYG 436 (519)
Q Consensus 360 ~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~---~h~~Hs~yiI~ns~~l~G 436 (519)
..|+-.|+.+|..|=.. ++ + +..++..|++|||||+.+.+. +|..-++.++... |
T Consensus 352 ~~HSv~VA~lA~~lA~~----lg-----------l---d~e~a~~AGLLHDIGK~v~~e~~g~Ha~iGa~ll~~~----~ 409 (535)
T PRK00106 352 LRHSVEVGKLAGILAGE----LG-----------E---NVALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKY----K 409 (535)
T ss_pred HHHHHHHHHHHHHHHHH----hC-----------C---CHHHHHHHHHHHhccCccCccccCChHHHHHHHHHHc----C
Confidence 37999999999855432 23 2 246799999999999998764 4777788888544 3
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhccccCCC
Q 010059 437 YSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (519)
Q Consensus 437 ~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~~~~ 495 (519)
+++. +...+.||....+.. ..++.++.+||+|+..+.+.
T Consensus 410 ~~~~----v~~aI~~HH~~~~~~----------------s~~a~IV~~AD~lsa~Rpga 448 (535)
T PRK00106 410 EHPV----VVNTIASHHGDVEPE----------------SVIAVIVAAADALSSARPGA 448 (535)
T ss_pred CCHH----HHHHHHHhCCCCCCC----------------ChHHHHHHHHHHhccCCCCC
Confidence 4432 466666666543221 12677888888888777543
No 40
>PRK10119 putative hydrolase; Provisional
Probab=95.91 E-value=0.071 Score=51.95 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccc-cCCCc---hhhhhHHHHH---c
Q 010059 358 KRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF-TSKKG---YHKQSCHIIM---N 430 (519)
Q Consensus 358 ~~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~-I~~~~---h~~Hs~yiI~---n 430 (519)
-+..|..+|.++|+.|-.. -+ .+..++.+||+|||||-. -+... +...+...+. .
T Consensus 25 HD~~Hi~RV~~lA~~Ia~~----e~--------------~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a~~a~~~L~ 86 (231)
T PRK10119 25 HDICHFRRVWATAQKLAAD----DD--------------VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAAEETRRILR 86 (231)
T ss_pred cChHHHHHHHHHHHHHHHh----cC--------------CCHHHHHHHHHHhhcchhhhcCccccchhhHHHHHHHHHHH
Confidence 3458999999999988421 11 256799999999999741 11111 1222443332 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCC-CcchhhccCChHHHHHHHHHHHHHH
Q 010059 431 GDHLYGYSTDEIKLIALLTRFHRKKFPR-SHHAFLEEFPEQAKQKFRVLCAIVR 483 (519)
Q Consensus 431 s~~l~G~s~~E~~~iA~iaryh~k~~~~-~~~~~~~~L~~~~~~~v~~L~aiLR 483 (519)
.. ..||+......|..++..|+-+... +....-+.+.+.||.-..=-..|.|
T Consensus 87 ~~-~~g~~~~~i~~V~~iI~~~sfs~~~~p~tlE~kIVQDADRLDAiGAIGIaR 139 (231)
T PRK10119 87 ED-FPDFPAEKIEAVCHAIEAHSFSAQIAPLTLEAKIVQDADRLEALGAIGLAR 139 (231)
T ss_pred Hc-ccCcCHHHHHHHHHHHHHcCCCCCCCCCCHHHhhhhhHHHHHhcchHHHHH
Confidence 31 3799999999999999888854321 1122334566666543322223445
No 41
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.89 E-value=0.09 Score=54.98 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=62.1
Q ss_pred cCCCCccEEEEEehhhhh-cCChHHHHHHHHHHhCCc-eEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEE
Q 010059 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (519)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~f~~~i~~~tG~~-i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (519)
+++++.+..++-|...-. ...++.+.+.+.+..|++ +-++ .++.++.+|.- ...++|+|||+|+|.++.
T Consensus 89 l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~---~~~~~a~~~~g------~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 89 LRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIA---IQAVLSLYASG------RTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred cCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEe---ccHHHHHHhCC------CCEEEEEecCCCcceEEE
Confidence 455544455566654322 334566777777776766 3333 44555544422 245899999999999999
Q ss_pred eeCCeEeee--eeeehhHHHHHHhhc
Q 010059 160 GKRGKVVFC--ESVNLGHVSLSEKFG 183 (519)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl~e~f~ 183 (519)
+.+|.+... ..+|+|.-.+++.+.
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 160 VVDGYVLPHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred EECCEEchhhheeccCcHHHHHHHHH
Confidence 999998865 778999988888653
No 42
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.83 E-value=0.039 Score=50.52 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCC----------------------
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---------------------- 418 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~---------------------- 418 (519)
.|+..|+.+|..|=..+ + ++ .....+|++|||||+.....
T Consensus 11 ~Hsl~Va~~a~~lA~~~----~-----------~d---~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (158)
T TIGR00488 11 QHCLGVGQTAKQLAEAN----K-----------LD---SKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKL 72 (158)
T ss_pred HHHHHHHHHHHHHHHHh----C-----------cC---HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccc
Confidence 79999999998775432 2 12 23578999999999864321
Q ss_pred chhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhcccc
Q 010059 419 GYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (519)
Q Consensus 419 ~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~ 492 (519)
.|..-+++++.+ +.||.++ .+...++||.. |.. . ...|+.++.+|+.++..+
T Consensus 73 ~H~~vGa~ll~~---w~~~~~~---~i~~aI~~H~~--~~~---~-----------~~~l~~iV~lAD~i~~~~ 124 (158)
T TIGR00488 73 LHAYVGAYILKR---EFGVQDE---DILDAIRNHTS--GPP---G-----------MSLLDMIIYVADKLEPNR 124 (158)
T ss_pred cHHHHHHHHHHH---HhCCCcH---HHHHHHHHhCC--CCC---C-----------CCHHHHHHHhHHHHhhcc
Confidence 255555666542 3455433 24455566653 210 0 024888999999998766
No 43
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=95.61 E-value=0.082 Score=53.28 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHH-HcC--CCCccEEEE---EehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCC
Q 010059 68 SVESLLMFRDIIQ-SHN--ISRDHTRAV---ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVF 141 (519)
Q Consensus 68 ~~~~L~~f~~~~~-~~~--v~~~~i~~v---ATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~ 141 (519)
+-..|+.|.+... ... ..+.=+.|+ +|+.=|. ++.+..+..-.-+|-+|....-| ..|+- ++..
T Consensus 81 te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr-----Ai~ea~~~aGa~~V~lieEp~aA---AIGag--lpi~ 150 (342)
T COG1077 81 TELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR-----AIKEAAESAGAREVYLIEEPMAA---AIGAG--LPIM 150 (342)
T ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH-----HHHHHHHhccCceEEEeccHHHH---HhcCC--Cccc
Confidence 3356777777654 233 222112222 2333333 46666666666677887654443 44443 4433
Q ss_pred CC-ceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHH
Q 010059 142 DR-LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (519)
Q Consensus 142 ~~-~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (519)
+. ..+++|||||+||+.+..-+.++.+.|+.+|.=.+.+
T Consensus 151 ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De 190 (342)
T COG1077 151 EPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDE 190 (342)
T ss_pred CCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhH
Confidence 22 2699999999999999999999999999999754443
No 44
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=95.61 E-value=0.2 Score=52.34 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCCCccEEEEEehhhhhc-CChHHHHHHHHHHhCCc-eEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEe
Q 010059 83 NISRDHTRAVATAAVRAA-ENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (519)
Q Consensus 83 ~v~~~~i~~vATsA~R~A-~N~~~f~~~i~~~tG~~-i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (519)
.+++.+..++-|...-.. ..++.+.+.+.+..|.+ +-+++..- ++.++.- ...++|+|||+|+|.++.+
T Consensus 90 ~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~---~a~~~~g------~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 90 KVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAV---LSLYASG------RTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHH---HHHHhcC------CCeEEEEECCCCeeEEEEE
Confidence 333333444555433222 34556666667766654 34444433 3333321 2458999999999999999
Q ss_pred eCCeEee--eeeeehhHHHHHHhhc
Q 010059 161 KRGKVVF--CESVNLGHVSLSEKFG 183 (519)
Q Consensus 161 ~~~~~~~--~~SlplG~vrl~e~f~ 183 (519)
.+|.+.. ...+++|.-.+++.+.
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHH
Confidence 9999875 3788999988888653
No 45
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.40 E-value=0.035 Score=54.69 Aligned_cols=84 Identities=26% Similarity=0.333 Sum_probs=52.5
Q ss_pred EEEehhhhhcCC--hHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeee
Q 010059 91 AVATAAVRAAEN--KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (519)
Q Consensus 91 ~vATsA~R~A~N--~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (519)
+|+-+|+-++.. -+.+.+.+++++|++++|-.-|-| ...+|+..+- -.+.+..++|+|||||.=++.+...-+.+
T Consensus 83 AVgiAAMVkt~~l~M~~iA~~l~~~lgv~V~igGvEAe--mAi~GALTTP-Gt~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 83 AVGIAAMVKTDKLQMQMIADELEEELGVPVEIGGVEAE--MAILGALTTP-GTDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEEEEEEE-SS-TCHHHHHHHHHHHTSEEEEECEHHH--HHHHHHTTST-T--SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHCCceEEccccHH--HHHhcccCCC-CCCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 455566655544 356799999999999999876544 5566877553 34567899999999999776654433334
Q ss_pred eeeehhHHHH
Q 010059 169 ESVNLGHVSL 178 (519)
Q Consensus 169 ~SlplG~vrl 178 (519)
..+ -|+=.+
T Consensus 160 iHl-AGAG~m 168 (332)
T PF08841_consen 160 IHL-AGAGNM 168 (332)
T ss_dssp EEE-E-SHHH
T ss_pred EEe-cCCchh
Confidence 333 344333
No 46
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.28 E-value=0.054 Score=50.85 Aligned_cols=141 Identities=25% Similarity=0.308 Sum_probs=82.4
Q ss_pred CceEEEEEecccceeeeEEEEeCCCCEE-EEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCCccE
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPNGKFL-TIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII-QSHNISRDHT 89 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~~~~~-~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~-~~~~v~~~~i 89 (519)
.+++-.+|+|+.+|-..|.+- +|.+. ........||=|--.+ .-.+++.+++.++-+ +++|+. +
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~--d~~Pvag~~~~advVRDGiVvd---------f~eaveiVrrlkd~lEk~lGi~---~ 93 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR--DGQPVAGCLDWADVVRDGIVVD---------FFEAVEIVRRLKDTLEKQLGIR---F 93 (277)
T ss_pred CceEEEeecccceEEEEEEcC--CCCeEEEEehhhhhhccceEEe---------hhhHHHHHHHHHHHHHHhhCeE---e
Confidence 367889999999999888754 45433 3444555555443222 233455666666544 345662 3
Q ss_pred EEEEehhh--hhcCChHHHHHHHHHHhCCceE-eeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEe
Q 010059 90 RAVATAAV--RAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (519)
Q Consensus 90 ~~vATsA~--R~A~N~~~f~~~i~~~tG~~i~-iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~ 166 (519)
.--+|+-= -+-.|.+..++-| +..|+++- +|+..--|.+ -+.. +++.|+|||||.|.++++++|+++
T Consensus 94 tha~taiPPGt~~~~~ri~iNVi-ESAGlevl~vlDEPTAaa~-------vL~l--~dg~VVDiGGGTTGIsi~kkGkVi 163 (277)
T COG4820 94 THAATAIPPGTEQGDPRISINVI-ESAGLEVLHVLDEPTAAAD-------VLQL--DDGGVVDIGGGTTGISIVKKGKVI 163 (277)
T ss_pred eeccccCCCCccCCCceEEEEee-cccCceeeeecCCchhHHH-------Hhcc--CCCcEEEeCCCcceeEEEEcCcEE
Confidence 22233211 0111333333333 34577753 6665543322 2333 237999999999999999999999
Q ss_pred eeeeeehhHH
Q 010059 167 FCESVNLGHV 176 (519)
Q Consensus 167 ~~~SlplG~v 176 (519)
++-.=|-|.-
T Consensus 164 y~ADEpTGGt 173 (277)
T COG4820 164 YSADEPTGGT 173 (277)
T ss_pred EeccCCCCce
Confidence 8876666653
No 47
>PTZ00280 Actin-related protein 3; Provisional
Probab=95.22 E-value=0.31 Score=51.90 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=61.1
Q ss_pred CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCC---C-CCCceEEEEECCCceEE
Q 010059 83 NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLP---V-FDRLVLSVDIGGGSTEF 157 (519)
Q Consensus 83 ~v~~~~i~~vAT-sA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~---~-~~~~~lv~DIGGGStEl 157 (519)
++++.+-.++-| ..+--..+++.+.+-+.+..+.+-=.+ ...+.++.+|.-..-+ . ....++|||+|.|+|.+
T Consensus 97 ~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~--~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i 174 (414)
T PTZ00280 97 RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYI--AVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHV 174 (414)
T ss_pred ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEE--ecCHHHhHhhhcccccccccCCceeEEEEECCCCceEE
Confidence 444433333444 444445577788888888877764322 2333444443311000 0 22358999999999999
Q ss_pred EEeeCCeEeee--eeeehhHHHHHHhhc
Q 010059 158 VIGKRGKVVFC--ESVNLGHVSLSEKFG 183 (519)
Q Consensus 158 ~~~~~~~~~~~--~SlplG~vrl~e~f~ 183 (519)
+-+-+|.+... ..+++|.-.+++.+.
T Consensus 175 ~PV~~G~~l~~~~~~~~~GG~~lt~~L~ 202 (414)
T PTZ00280 175 IPVVDGYVIGSSIKHIPLAGRDITNFIQ 202 (414)
T ss_pred EEEECCEEcccceEEecCcHHHHHHHHH
Confidence 99988887643 567999888887653
No 48
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.19 E-value=0.025 Score=63.63 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 399 ~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
+.+|.+||+|||||+-.. .+|.+-++.+...--.=+||+++++..+..+++||-.
T Consensus 402 ~~lL~LAALlHDIGKg~g-~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~HL~ 456 (693)
T PRK00227 402 PDLLLLGALYHDIGKGYP-RPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAEHTT 456 (693)
T ss_pred cHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhcc
Confidence 468899999999999874 4789999988866433589999999999999999953
No 49
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.95 E-value=0.28 Score=49.47 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=89.3
Q ss_pred EEEEEecccceeeeEEEEeC----CC----CEEEEEe---eeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 010059 15 FASIDMGTSSFKLLIIRAYP----NG----KFLTIDT---LKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHN 83 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~----~~----~~~~i~~---~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~ 83 (519)
-..||||+.+..++..++.- .. .++++++ ++.++ +---+.+.|.|.+.+++..+ +++|+. -|
T Consensus 7 SVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i-~FTPv~~q~~id~~alk~~v--~eeY~~----AG 79 (473)
T COG4819 7 SVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPI-FFTPVDKQGGIDEAALKKLV--LEEYQA----AG 79 (473)
T ss_pred eeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecce-eeeeecccCCccHHHHHHHH--HHHHHH----cC
Confidence 35799999998776655431 11 1233322 12222 22344567888888877654 455654 36
Q ss_pred CCCccEE---EEEe-hhhhhcCChHHHHHHHHHHhCCceEeeCh-HHHHHHHHhhhh-ccCCC-CCCceEEEEECCCceE
Q 010059 84 ISRDHTR---AVAT-AAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFVYMGVL-QFLPV-FDRLVLSVDIGGGSTE 156 (519)
Q Consensus 84 v~~~~i~---~vAT-sA~R~A~N~~~f~~~i~~~tG~~i~iIsg-~eEA~l~~~gv~-~~~~~-~~~~~lv~DIGGGStE 156 (519)
+.++.|- ++-| +..| -+|+...+..+..-.|-=|----| .-|.-+.-.|.- +++.. .....+=+|||||.|.
T Consensus 80 i~pesi~sGAvIITGEtAr-k~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN 158 (473)
T COG4819 80 IAPESIDSGAVIITGETAR-KRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTN 158 (473)
T ss_pred CChhccccccEEEeccccc-cccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccc
Confidence 6554431 1122 2223 368888888887766633322222 233333333432 22321 1124677999999999
Q ss_pred EEEeeCCeEeeeeeeehhHH
Q 010059 157 FVIGKRGKVVFCESVNLGHV 176 (519)
Q Consensus 157 l~~~~~~~~~~~~SlplG~v 176 (519)
+++|+.|++.....|.+|.-
T Consensus 159 ~slFD~Gkv~dTaCLdiGGR 178 (473)
T COG4819 159 YSLFDAGKVSDTACLDIGGR 178 (473)
T ss_pred eeeecccccccceeeecCcE
Confidence 99999999999889988863
No 50
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.90 E-value=0.033 Score=63.91 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 399 ~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
..+|.+||+|||||+-... +|.+-++.+...--.=+||++++...++.+++||-.
T Consensus 442 ~~lL~lAaLlHDiGKg~~~-~Hs~~Ga~~a~~i~~RL~l~~~~~~~v~~LV~~Hl~ 496 (774)
T PRK03381 442 PDLLLLGALLHDIGKGRGG-DHSVVGAELARQIGARLGLSPADVALLSALVRHHLL 496 (774)
T ss_pred HHHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhhh
Confidence 3578999999999997654 788888888765433589999999999999999953
No 51
>PTZ00004 actin-2; Provisional
Probab=94.86 E-value=0.58 Score=49.18 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=89.8
Q ss_pred EEEEEecccceeeeEEEEeCCC-C-EEEEEeee----------eeeeccCCC------------CcCCCCC-HHHHHHHH
Q 010059 15 FASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLK----------QPVILGRDL------------SSSCSIS-TQSQARSV 69 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~-~-~~~i~~~k----------~~vrLg~~~------------~~~g~ls-~e~i~~~~ 69 (519)
.-|||+||.++|.-.+.-+... . ...+-+.+ ..+-+|+.. .++|.+. .++++...
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~ 87 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIW 87 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHHH
Confidence 5799999999998876321100 0 11111111 112234332 1334443 46666555
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEehh-hhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEE
Q 010059 70 ESLLMFRDIIQSHNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSV 148 (519)
Q Consensus 70 ~~L~~f~~~~~~~~v~~~~i~~vATsA-~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~ 148 (519)
+-+ |. +..++++.+.-++-|.. +--..+++.+.+-+.+..|++-=-+ ..++.++.++. ....++|+
T Consensus 88 ~~~--~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~--~~~~~ls~ya~------g~~tglVV 154 (378)
T PTZ00004 88 HHT--FY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYV--AIQAVLSLYAS------GRTTGIVL 154 (378)
T ss_pred HHH--HH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEe--eccHHHHHHhc------CCceEEEE
Confidence 541 21 23455544455566654 3333456677888888877773222 22344444442 12458999
Q ss_pred EECCCceEEEEeeCCeEe--eeeeeehhHHHHHHhh
Q 010059 149 DIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKF 182 (519)
Q Consensus 149 DIGGGStEl~~~~~~~~~--~~~SlplG~vrl~e~f 182 (519)
|+|.++|.++-+.+|.+. ....+++|.-.+++.+
T Consensus 155 DiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 155 DSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYM 190 (378)
T ss_pred ECCCCcEEEEEEECCEEeecceeeecccHHHHHHHH
Confidence 999999999999999876 4566789988887754
No 52
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.052 Score=56.82 Aligned_cols=143 Identities=22% Similarity=0.162 Sum_probs=87.4
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHH-----HHHHcCCCCc
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRD-----IIQSHNISRD 87 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~-----~~~~~~v~~~ 87 (519)
+.+..||-||-.-|.-||++. +|......-+-..=+|-.++.+...-+ .++.....+|-..+. .++ .+.
T Consensus 120 qYv~~idagstgsr~~iyqfi-dge~~~~~~~~~~n~L~~~l~d~d~~t-~G~~~s~~~l~qiA~~~~p~e~~--r~~-- 193 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFI-DGEIEGQYLWLNTNYLEPGLSDFDTDT-VGFADSGGALLQIAFEFVPSEIR--RCM-- 193 (549)
T ss_pred heecccccCCCccceeEEEee-cCccCcchhhhhhhhhccccccccccc-HHHHhhccHHHHhhhccCCHHHh--hcC--
Confidence 467899999999999999997 566555443333334444443321112 233322333322221 112 222
Q ss_pred cEEEEEehhhhhc--CChHHHHHHHHHHhC----------CceEeeChHHHHHHHHhhhhccCC----C-C-CCceEEEE
Q 010059 88 HTRAVATAAVRAA--ENKDEFVECVREKVG----------FEVDVLTGEQEAKFVYMGVLQFLP----V-F-DRLVLSVD 149 (519)
Q Consensus 88 ~i~~vATsA~R~A--~N~~~f~~~i~~~tG----------~~i~iIsg~eEA~l~~~gv~~~~~----~-~-~~~~lv~D 149 (519)
.+.+.||+.+|-- .-...++.-++..+| .-|+++.|.+|.-|.+--+...+. . . ...+-|+|
T Consensus 194 pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d 273 (549)
T COG5371 194 PIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVD 273 (549)
T ss_pred cceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCccccee
Confidence 3778999999931 224567777776654 469999999999777655543221 1 1 24578999
Q ss_pred ECCCceEEEEee
Q 010059 150 IGGGSTEFVIGK 161 (519)
Q Consensus 150 IGGGStEl~~~~ 161 (519)
.|||||+|.+-.
T Consensus 274 ~gg~stqll~~~ 285 (549)
T COG5371 274 CGGGSTQLLLKP 285 (549)
T ss_pred ccCcceeeeecC
Confidence 999999998643
No 53
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=94.63 E-value=0.062 Score=54.81 Aligned_cols=108 Identities=16% Similarity=0.294 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCc------hhh-hhHHHHHcCCC
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG------YHK-QSCHIIMNGDH 433 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~------h~~-Hs~yiI~ns~~ 433 (519)
+|..+|++++..+-..+ + +++.+-.++..||.|||||+--=+++ +-. +-+-+....+
T Consensus 188 ~H~~Rv~~~~~~lAe~l----g-----------Lse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~- 251 (360)
T COG3437 188 DHLERVAQYSELLAELL----G-----------LSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHP- 251 (360)
T ss_pred hHHHHHHHHHHHHHHHh----C-----------CCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcch-
Confidence 78888888887664443 3 56778899999999999998543221 112 2222333332
Q ss_pred CCCC---CHHH--HHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhc
Q 010059 434 LYGY---STDE--IKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (519)
Q Consensus 434 l~G~---s~~E--~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld 489 (519)
.+|. ...+ ....|.||++|.-..... -+...|.-++.-. .|.|+.+|+.+|
T Consensus 252 ~~G~~il~~s~~~mq~a~eIa~~HHErwDGs--GYPdgLkGd~IPl---~arI~aiADvfD 307 (360)
T COG3437 252 ILGAEILKSSERLMQVAAEIARHHHERWDGS--GYPDGLKGDEIPL---SARIVAIADVFD 307 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--CCCCCCCccccch---hHHHHHHHHHHH
Confidence 5553 2333 356777999988665542 2234566555544 445555555554
No 54
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=94.53 E-value=0.042 Score=59.43 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhcccc----------CCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 400 EYLEAACLLHNIGHFT----------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 400 ~lL~~Aa~LhdiG~~I----------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
.+|.+||+|||||+.. ++++|.+-++.+...--.=++||.+++..+..+++||-.
T Consensus 280 ~~l~lAaLLHDiGK~~t~~~~~~g~~~f~gH~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~ 344 (466)
T TIGR02692 280 LVLRWAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLR 344 (466)
T ss_pred HHHHHHHHHhhccCCCCcccccCCCcccCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 4799999999999763 567788888887654322479999999999999999964
No 55
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=94.43 E-value=0.061 Score=57.07 Aligned_cols=65 Identities=18% Similarity=0.405 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHH
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTD 440 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~ 440 (519)
+|+-=|..+|..+++.+..... . ..++.++.++++||+|||||.. -.-|++..+.+.+ .++.|+
T Consensus 54 eHSLGV~~la~~~~~~l~~~~~--~-------~~~~~~~~~~~~AALLHDIGHg-----PFSH~fE~~~~~~--~~~~He 117 (421)
T COG1078 54 EHSLGVYHLARRLLEHLEKNSE--E-------EIDEEERLLVRLAALLHDIGHG-----PFSHTFEYVLDKN--LGFYHE 117 (421)
T ss_pred chhhHHHHHHHHHHHHHhhccc--c-------ccchHHHHHHHHHHHHHccCCC-----ccccchHHHhccc--ccccHH
Confidence 6888899999999997764432 0 2566778899999999999953 2345555555553 444444
Q ss_pred H
Q 010059 441 E 441 (519)
Q Consensus 441 E 441 (519)
+
T Consensus 118 ~ 118 (421)
T COG1078 118 D 118 (421)
T ss_pred H
Confidence 3
No 56
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.38 E-value=0.056 Score=62.94 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 398 ~~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
.+.+|.+||+|||||+-... +|.+-++.+...--.-.||++++...++.++++|-.
T Consensus 497 ~~~lL~lAaLlHDIGKg~~~-dHs~~Ga~~a~~il~rl~l~~~~~~~v~~LV~~Hl~ 552 (884)
T PRK05007 497 KKELLLLAALFHDIAKGRGG-DHSILGAQDALEFAELHGLNSRETQLVAWLVRNHLL 552 (884)
T ss_pred ChhHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999997644 788888887755433589999999999999999975
No 57
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.80 E-value=0.089 Score=61.09 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 398 ~~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
.+.+|.+||+|||||+--.. +|.+-++.+...--.=+||++++...++.+++||-.
T Consensus 472 ~~~~L~lAaLlHDIGKG~~~-dHs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~Hl~ 527 (854)
T PRK01759 472 DRTLLYIAALFHDIAKGRGG-DHAELGAVDMRQFAQQHGFDQREIETMAWLVQQHLL 527 (854)
T ss_pred CHHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhH
Confidence 36789999999999997654 788888887765422589999999999999999975
No 58
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.69 E-value=0.093 Score=60.91 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 010059 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 399 ~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~ 453 (519)
+.+|.+|++|||||+-... +|.+-++.+...-=.=+||+.++...++.+++||-
T Consensus 486 ~~lL~lAaLlHDIGKg~~~-dHs~~Ga~~a~~i~~Rl~l~~~~~~~v~~LV~~Hl 539 (869)
T PRK04374 486 PELLLLAGLFHDIAKGRGG-DHSELGAVDARAFCLAHRLSEGDTELVTWLVEQHL 539 (869)
T ss_pred ccHHHHHHHHHhccCCCCC-ChHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 4589999999999998754 78888888875542357999999999999999995
No 59
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=93.67 E-value=0.29 Score=45.97 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=38.5
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHH
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII 79 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~ 79 (519)
+++|||||.++++++.+..+++.++++.....+ ..+ ..+|.+.+ ++.+.+++++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~---s~g-i~~G~I~d--~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP---SRG-IRKGVIVD--IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec---CCC-ccCcEEEC--HHHHHHHHHHHHHHH
Confidence 478999999999999998766788888665554 233 33455544 344444444444433
No 60
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.67 E-value=0.081 Score=61.72 Aligned_cols=54 Identities=19% Similarity=0.054 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 010059 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 399 ~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~ 453 (519)
..+|.+|++|||||+-.. .+|.+-++.+...--.=.||+.++...++.++++|-
T Consensus 497 ~~lL~lAaLlHDIGKg~~-~~Hs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~HL 550 (895)
T PRK00275 497 PELLYIAGLYHDIGKGRG-GDHSELGAVDAEAFCQRHQLPAWDTRLVVWLVENHL 550 (895)
T ss_pred HHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 458999999999999875 478888988876543358999999999999999993
No 61
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.46 E-value=0.11 Score=60.93 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 010059 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 399 ~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~ 453 (519)
+.+|.+||+|||||+-- ..+|.+-++.+...--.=.||+.+++..++.+++||-
T Consensus 530 ~~~L~lAaLlHDIGKg~-~~dHs~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 583 (931)
T PRK05092 530 RRALYVAVLLHDIAKGR-PEDHSIAGARIARRLCPRLGLSPAETETVAWLVEHHL 583 (931)
T ss_pred HHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999965 3578888888776543358999999999999999995
No 62
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.40 E-value=0.11 Score=60.47 Aligned_cols=56 Identities=27% Similarity=0.217 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 398 ~~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
.+.+|.+||+|||||+-- ..+|++-++.+..+--.=+||+.++...++.+++||-.
T Consensus 464 ~~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl~ 519 (850)
T TIGR01693 464 DPELLYLAALLHDIGKGR-GGDHSVLGAEDARDVCPRLGLDRPDTELVAWLVRNHLL 519 (850)
T ss_pred CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999964 45788889888765322479999999999999999974
No 63
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=93.21 E-value=0.2 Score=52.02 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=34.2
Q ss_pred CCceEEEEECCCceEEEEeeCCeEeeeee--eehhHHHHHHh
Q 010059 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCES--VNLGHVSLSEK 181 (519)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~~~~~S--lplG~vrl~e~ 181 (519)
++..+++|||||+|+++.++++++....| ++.|...+.+.
T Consensus 184 ~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~ 225 (344)
T PRK13917 184 EGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKR 225 (344)
T ss_pred cCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHH
Confidence 34579999999999999999999976655 99999888774
No 64
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=93.19 E-value=0.45 Score=46.59 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=46.4
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCCccEEEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQA-RSVESLLMFRDIIQSHNISRDHTRAV 92 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~-~~~~~L~~f~~~~~~~~v~~~~i~~v 92 (519)
++.+||+||.|+|..+++ .+|++. ...+.+......-......+++.+- .++++ +++++++++++..+|.++
T Consensus 1 y~lgiDiGTts~K~~l~d--~~g~iv--~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~---~~~~~~~~~~~~~~I~aI 73 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD--EDGKIV--ASASRPYPYYTPEPGWAEQDPDEIWEAICEA---LKELLSQAGIDPEQIKAI 73 (245)
T ss_dssp EEEEEEECSSEEEEEEEE--TTSCEE--EEEEEEETEBCSSTTEEEE-HHHHHHHHHHH---HHHHHHHCTSCGGGEEEE
T ss_pred CEEEEEEcccceEEEEEe--CCCCEE--EEEEEeeeeccccccccccChHHHHHHHHHH---HHHHHhhcCcccceeEEE
Confidence 368999999999999997 356543 3333333322221111233444443 33333 445556667777899999
Q ss_pred Eehhhhh
Q 010059 93 ATAAVRA 99 (519)
Q Consensus 93 ATsA~R~ 99 (519)
+.++.+.
T Consensus 74 ~is~~~~ 80 (245)
T PF00370_consen 74 GISGQGH 80 (245)
T ss_dssp EEEE-SS
T ss_pred EeccccC
Confidence 9887654
No 65
>PTZ00466 actin-like protein; Provisional
Probab=92.87 E-value=1.8 Score=45.48 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=89.4
Q ss_pred eEEEEEecccceeeeEEEEeCCCC--EEEEEeeee----------eeeccCCC------------CcCCCCC-HHHHHHH
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGK--FLTIDTLKQ----------PVILGRDL------------SSSCSIS-TQSQARS 68 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~--~~~i~~~k~----------~vrLg~~~------------~~~g~ls-~e~i~~~ 68 (519)
..-|||+||.++|.=.+.-+.... ...+-+.+. .+-.|+.. .++|.+. -+.++..
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~i 92 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMENI 92 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHHH
Confidence 357999999999977663211010 111221111 11233321 1234333 3666666
Q ss_pred HHHHHHHHHHHHHcCCCCccEEEEEeh-hhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEE
Q 010059 69 VESLLMFRDIIQSHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 69 ~~~L~~f~~~~~~~~v~~~~i~~vATs-A~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv 147 (519)
.+-+ |. ..++++.+.-++-|+ .+--..+++.+.+-+.+..+++-=.+ ...+-++.++. ....++|
T Consensus 93 w~~~--f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~--~~~~~lsl~a~------g~~tglV 158 (380)
T PTZ00466 93 WIHV--YN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFI--SIQAILSLYSC------GKTNGTV 158 (380)
T ss_pred HHHH--Hh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEE--ecchHHHHHhc------CCceEEE
Confidence 6654 32 245554343444444 44444566777787888777754322 23444444432 2245899
Q ss_pred EEECCCceEEEEeeCCeEee--eeeeehhHHHHHHhh
Q 010059 148 VDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (519)
Q Consensus 148 ~DIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (519)
+|+|-++|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 159 VD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L 195 (380)
T PTZ00466 159 LDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYL 195 (380)
T ss_pred EeCCCCceEEEEEECCEEeecceeEecCchhHHHHHH
Confidence 99999999999999998763 456789988887754
No 66
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=92.86 E-value=0.18 Score=53.62 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhhcccc-------CCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 400 EYLEAACLLHNIGHFT-------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 400 ~lL~~Aa~LhdiG~~I-------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
..|.+||+|||+|+.. ++++|.+-+..++..--.=++++.+.+..+..+++||-.
T Consensus 246 l~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~i~~RLk~p~~~~~~~~~lv~~H~~ 307 (409)
T PRK10885 246 LDVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQLCQRLRVPNECRDLALLVAEEHDN 307 (409)
T ss_pred HHHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHHHHHHcCcCHHHHHHHHHHHHHhhc
Confidence 3589999999999976 455788888888755422479999999999999999963
No 67
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.81 E-value=0.12 Score=59.99 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 010059 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 399 ~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~ 453 (519)
+.+|.+||+|||||+--. .+|.+-++.+...--.=.||+.++...++.+++||-
T Consensus 477 ~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~A~~il~rl~l~~~~~~~V~~LV~~Hl 530 (856)
T PRK03059 477 PWLLYVAALFHDIAKGRG-GDHSTLGAVDARRFCRQHGLAREDAELVVWLVEHHL 530 (856)
T ss_pred hhHHHHHHHHHhhccCCC-CCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 578999999999999754 478888887765432247999999999999999996
No 68
>PTZ00452 actin; Provisional
Probab=92.53 E-value=1.7 Score=45.56 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=62.8
Q ss_pred HcCCCCccEEEEEeh-hhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEE
Q 010059 81 SHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (519)
Q Consensus 81 ~~~v~~~~i~~vATs-A~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (519)
..++++.+.-++-|+ .+.-..|++.+.+-+.+..+++-=.+ ...+.++.++. ....++|+|+|-|+|.++-
T Consensus 93 ~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~--~~~~~lslya~------g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 93 ELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYI--SNEAVLSLYTS------GKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred hcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEE--echHHHHHHHC------CCceeeeecCCCCcceEEE
Confidence 345665444555565 44444567778888888877764332 33444444442 2245899999999999999
Q ss_pred eeCCeEe--eeeeeehhHHHHHHhh
Q 010059 160 GKRGKVV--FCESVNLGHVSLSEKF 182 (519)
Q Consensus 160 ~~~~~~~--~~~SlplG~vrl~e~f 182 (519)
+-+|.+. ....+++|.-.+++.+
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L 189 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYL 189 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHH
Confidence 9999776 3566789988887754
No 69
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=92.30 E-value=0.61 Score=43.51 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=30.9
Q ss_pred HHHHHHhhhhccccC-----------CCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHH
Q 010059 402 LEAACLLHNIGHFTS-----------KKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLT 449 (519)
Q Consensus 402 L~~Aa~LhdiG~~I~-----------~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~ia 449 (519)
+-+||+|||||..++ ..+|..-++.+|.. + |+++=..+|..-+
T Consensus 46 lvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~---~--F~~~V~~lV~~Hv 99 (179)
T TIGR03276 46 LIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRE---L--FSPSVTEPIRLHV 99 (179)
T ss_pred HHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHH---H--cCHHHHHHHHHHH
Confidence 589999999999987 45566677777742 2 6776666666644
No 70
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=92.30 E-value=2 Score=43.36 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=65.8
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE-EE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-AV 92 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~-~v 92 (519)
++.-|||||-|++.++.+ + + +++... ...+|.=+.+... + -+.+++++.|....++. ++
T Consensus 33 ~~~GIDiGStt~K~Vlld-~--~--~i~~~~---------~~~tg~~~~~~a~---~---~l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-D--G--ELYGYN---------SMRTGNNSPDSAK---N---ALQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred EEEEEEeCchhEEEEEEe-C--C--EEEEEE---------eecCCCCHHHHHH---H---HHHHHHHHcCCcccceEEEE
Confidence 579999999999999996 2 3 233322 1222222233322 2 33344455566433444 56
Q ss_pred EehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEe-eCCeEe
Q 010059 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (519)
Q Consensus 93 ATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~-~~~~~~ 166 (519)
+|--=|..- .|.+ ++ -.|-.--..|+....|. +--.|+||||--+-++.+ ++|++.
T Consensus 93 ~TGyGr~~~---~~a~----------~~---v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~ 149 (293)
T TIGR03192 93 GTGYGRVNV---PFAH----------KA---ITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVT 149 (293)
T ss_pred EECcchhhc---chhh----------cc---eeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEe
Confidence 676555421 1211 12 23555566677765532 124899999999999987 577654
No 71
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=92.24 E-value=0.77 Score=52.76 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcccc-------------------------
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT------------------------- 415 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I------------------------- 415 (519)
+|...|+++|..+-. .+++ +....++++|++|||+|++-
T Consensus 678 eHl~~va~lA~~fa~----~~gl------------~~~~~~~~laGllHDlGK~~~~FQ~yL~~~~~p~~~~~~~~~~~~ 741 (844)
T TIGR02621 678 DHLDNVFEVAKNFVA----KLGL------------GDLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLAKLAKSGPWAA 741 (844)
T ss_pred HHHHHHHHHHHHHHH----HcCc------------hHHHHHHHHHHHhcccccCCHHHHHHhcCCCCccccccccccchh
Confidence 688888888874432 2332 12346689999999999973
Q ss_pred ----CCCchhhhhHHHHHcCCCCCCCCHHHHHHH-HHHHHhccCCCCCC
Q 010059 416 ----SKKGYHKQSCHIIMNGDHLYGYSTDEIKLI-ALLTRFHRKKFPRS 459 (519)
Q Consensus 416 ----~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~i-A~iaryh~k~~~~~ 459 (519)
..+.|-.+|..-+.|.+....+++.++.++ =+||.+|+...|-.
T Consensus 742 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~lvl~liaaHHg~~rp~~ 790 (844)
T TIGR02621 742 KIARSMYRHEKGSLIDVANAPGFSMLSEELSDLVLHLVATHHGRNRPHF 790 (844)
T ss_pred hhhhhhhcCCchhHHhhhccccccccChhHHHHHHHHHHHhccCCCCCC
Confidence 335666777777777544566777776644 44778888877653
No 72
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=92.16 E-value=0.29 Score=47.49 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCc---hhhhhHHHHHcC
Q 010059 359 RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG---YHKQSCHIIMNG 431 (519)
Q Consensus 359 ~~~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~---h~~Hs~yiI~ns 431 (519)
+..|+.+|+.+|..|=.. .+ -+-.+...||+|||||..+.+.. |..=++-+...-
T Consensus 37 ~l~H~~~Va~lA~~Ia~~----~g--------------~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~ 94 (222)
T COG1418 37 VLEHSLRVAYLAYRIAEE----EG--------------VDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKF 94 (222)
T ss_pred HHHHHHHHHHHHHHHHHH----cC--------------CCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHH
Confidence 358999999999977432 23 14689999999999999998884 666666666544
No 73
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=92.10 E-value=0.31 Score=50.55 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccC------------------CCchhh
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS------------------KKGYHK 422 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~------------------~~~h~~ 422 (519)
.|+.+|+.+|..|=.+| + +++.+.+.|.+||+|||||+--= .+.|..
T Consensus 151 ~Hs~~va~~a~~ia~~l----g-----------l~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~ 215 (344)
T COG2206 151 GHSVRVAELAEAIAKKL----G-----------LSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPI 215 (344)
T ss_pred HHHHHHHHHHHHHHHHc----C-----------CCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchH
Confidence 79999999998775544 3 56667789999999999998532 234555
Q ss_pred hhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcchhhccCChHHHHHHHHHHHHHHhhHHhcccc
Q 010059 423 QSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (519)
Q Consensus 423 Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~~~~~~~~~~~L~~~~~~~v~~L~aiLRlA~~Ld~s~ 492 (519)
.++.++.+.+ -|+ ..+..+|.+|.-..... ... .-|..++ +-..|.|+-+||..|.-.
T Consensus 216 ~g~~iL~~~~---~~~----~~~~~~~l~HHEr~DGt-GYP-~GL~Gee---I~l~aRIiAVADvydAlt 273 (344)
T COG2206 216 YGYDILKDLP---EFL----ESVRAVALRHHERWDGT-GYP-RGLKGEE---IPLEARIIAVADVYDALT 273 (344)
T ss_pred HHHHHHHhcc---ccc----HHHHHHHHHhhhccCCC-CCC-CCCCccc---CChHhHHHHHhhHHHHHh
Confidence 5655554442 222 23333444454333321 111 1233222 333667777888777544
No 74
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=92.00 E-value=0.28 Score=50.27 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.7
Q ss_pred ceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEee--eeeeehhHHHHHHhh
Q 010059 117 EVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (519)
Q Consensus 117 ~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (519)
+|.|+....=|.+.++-=.......+...+|+||||++|.++.++++++.. +.|++.|+..+.+..
T Consensus 141 ~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 141 KVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred EEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHH
Confidence 356777666666655421001111345589999999999999999998865 557899998888754
No 75
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=91.65 E-value=2.3 Score=47.55 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhc
Q 010059 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (519)
Q Consensus 59 ~ls~e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~ 136 (519)
.++++. -+...|+.+++.++.+ |.+. ..+|-|=-.---.+++..+..+-+..|+++ ++|+...=|-+.| |...
T Consensus 103 ~~~p~e--i~a~iL~~lk~~a~~~lg~~v--~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~ 177 (599)
T TIGR01991 103 TVTPVE--VSAEILKKLKQRAEESLGGDL--VGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY-GLDK 177 (599)
T ss_pred EEcHHH--HHHHHHHHHHHHHHHHhCCCc--ceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHH-hhcc
Confidence 345543 3345677777666553 4432 233433211111234455666677789997 6888888887776 3322
Q ss_pred cCCCCCCceEEEEECCCceEEEEee--CCeEe---eeeeeehhHHHHHHh
Q 010059 137 FLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEK 181 (519)
Q Consensus 137 ~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~ 181 (519)
. .+...+|+|+|||++.+++++ ++.+. .....++|..-+.+.
T Consensus 178 ~---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~ 224 (599)
T TIGR01991 178 A---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHA 224 (599)
T ss_pred C---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHH
Confidence 1 245689999999999999876 44322 123357888776664
No 76
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=91.47 E-value=1.3 Score=43.92 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=63.7
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccE-EEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT-RAV 92 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i-~~v 92 (519)
.++-||+||-+++.++.+.+ ++....+.....+++ +.=+.+. +-++| .+++++.|++..++ .++
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~~~~--------~~~~~~~---~~~~l---~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRNDRIR--------QRDPFKL---AEDAY---DDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEecCC--------CCCHHHH---HHHHH---HHHHHHcCCChhheEEEE
Confidence 47899999999999999643 233333322211111 1111222 22333 33444556632233 356
Q ss_pred EehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEe-eCCeEe
Q 010059 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (519)
Q Consensus 93 ATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~-~~~~~~ 166 (519)
+|--=|.. .|.+ +.-. |-.--..|+....| +- -.|+||||--+-++.+ ++|++.
T Consensus 67 ~TGYGR~~----~~a~------~~vt-------EIt~ha~GA~~~~p--~~-~tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 67 TTGEGESL----AFHT------GHFY-------SMTTHARGAIYLNP--EA-RAVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EECCchhh----hhhc------CCee-------EEeHHHHHHHHHCC--CC-CEEEEeCCCceEEEEEcCCCcEe
Confidence 66654543 2221 1111 33344556665554 22 4999999999999887 467664
No 77
>PTZ00281 actin; Provisional
Probab=91.22 E-value=1.3 Score=46.52 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=60.3
Q ss_pred HcCCCCccEEEEEehhh-hhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEE
Q 010059 81 SHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (519)
Q Consensus 81 ~~~v~~~~i~~vATsA~-R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (519)
..++++.+.-++-|+.. --..+++.+.+-+.+..+++-=-+ ...+.++.++. ....++|+|+|-++|.++-
T Consensus 94 ~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~--~~~~~ls~ya~------g~~tglVVDiG~~~t~v~P 165 (376)
T PTZ00281 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQAVLSLYAS------GRTTGIVMDSGDGVSHTVP 165 (376)
T ss_pred hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEe--eccHHHHHHhc------CCceEEEEECCCceEEEEE
Confidence 34566555555666543 333456667777777777663222 22333333331 2245899999999999998
Q ss_pred eeCCeEe--eeeeeehhHHHHHHhh
Q 010059 160 GKRGKVV--FCESVNLGHVSLSEKF 182 (519)
Q Consensus 160 ~~~~~~~--~~~SlplG~vrl~e~f 182 (519)
+-+|.+. ....+++|.-.+++.+
T Consensus 166 V~dG~~~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 166 IYEGYALPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred EEecccchhheeeccCcHHHHHHHH
Confidence 8888776 4567789988888765
No 78
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=91.01 E-value=4.4 Score=42.49 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=55.9
Q ss_pred cCCCCccEEEEEehhhhh-cCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEE
Q 010059 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (519)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~ 159 (519)
.++++.+..++-|..... ..-++.+++.+.+..|++- -+++ ++.++.++.- ...++|||+|.++|.++-
T Consensus 88 l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~---~~~~a~~~~g------~~tglVVD~G~~~t~v~p 158 (393)
T PF00022_consen 88 LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIP---SPLLALYASG------RTTGLVVDIGYSSTSVVP 158 (393)
T ss_dssp T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEE---HHHHHHHHTT------BSSEEEEEESSS-EEEEE
T ss_pred cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeee---cccccccccc------cccccccccceeeeeeee
Confidence 355555566666654432 2334567777777777763 3333 3344443322 235899999999999999
Q ss_pred eeCCeEee--eeeeehhHHHHHHhh
Q 010059 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (519)
Q Consensus 160 ~~~~~~~~--~~SlplG~vrl~e~f 182 (519)
+-+|.+.. ...+|+|.-.+++.+
T Consensus 159 V~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 159 VVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp EETTEE-GGGBEEES-SHHHHHHHH
T ss_pred eeeccccccccccccccHHHHHHHH
Confidence 99998874 467899998888754
No 79
>CHL00094 dnaK heat shock protein 70
Probab=90.76 E-value=2.7 Score=47.28 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEe-----eeeeeehhHHH
Q 010059 104 DEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV-----FCESVNLGHVS 177 (519)
Q Consensus 104 ~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~-----~~~SlplG~vr 177 (519)
+..+...-+..|+++ ++|+...=|-+.| |... . .+...+|+|+|||++.+++++-+... .....++|.--
T Consensus 151 R~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d 226 (621)
T CHL00094 151 RQATKDAGKIAGLEVLRIINEPTAASLAY-GLDK--K-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDD 226 (621)
T ss_pred HHHHHHHHHHcCCceEEEeccHHHHHHHh-cccc--C-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHH
Confidence 334455556779995 6888888887776 3221 1 23568999999999999987644322 23446778766
Q ss_pred HHHh
Q 010059 178 LSEK 181 (519)
Q Consensus 178 l~e~ 181 (519)
+.+.
T Consensus 227 ~D~~ 230 (621)
T CHL00094 227 FDKK 230 (621)
T ss_pred HHHH
Confidence 6553
No 80
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=90.04 E-value=1.2 Score=46.76 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=64.7
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE-
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA- 91 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~- 91 (519)
..+.-||+||-|++.++.+ ++ +++.....+ ++ ...+.+.++++ +.+++.|++..++..
T Consensus 144 g~~lGIDiGSTttK~Vl~d---d~--~Ii~~~~~~---------t~----~~~~~a~~~l~---~~l~~~Gl~~~di~~i 202 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME---DN--EVIGTGWVP---------TT----KVIESAEEAVE---RALEEAGVSLEDVEAI 202 (404)
T ss_pred CEEEEEEcChhheeeEEEc---CC--eEEEEEEee---------cc----cHHHHHHHHHH---HHHHHcCCCccceeEE
Confidence 3689999999999999975 23 455432221 11 11233333333 345556765445554
Q ss_pred EEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEe
Q 010059 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (519)
Q Consensus 92 vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~ 166 (519)
++|--=|. .+.. ..|.+. + .+|-.-...|+....|.......|+||||--...+..++|++.
T Consensus 203 ~~TGyGR~------~i~~---~~~ad~-i---v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 203 GTTGYGRF------TIGE---HFGADL-I---QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeeeecHH------HHhh---hcCCCc-e---EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCcee
Confidence 44543333 2221 122220 0 1233344556655444211236999999988888887777654
No 81
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=89.67 E-value=3.6 Score=46.52 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhcc
Q 010059 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (519)
Q Consensus 60 ls~e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~ 137 (519)
++++.+.. ..|+..++.+++| |.+.. .+|-|--.---.+.+..+...-+..|+++ ++|+...=|-+.| |...
T Consensus 135 ~speeisa--~iL~~Lk~~Ae~~lg~~v~--~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlay-g~~~- 208 (657)
T PTZ00186 135 YSPSQIGA--FVLEKMKETAENFLGHKVS--NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAY-GMDK- 208 (657)
T ss_pred EcHHHHHH--HHHHHHHHHHHHHhCCccc--eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHH-hccC-
Confidence 44444332 2355555555554 44322 33444222122345555666667789996 6899988888876 3322
Q ss_pred CCCCCCceEEEEECCCceEEEEee--CCeEeee---eeeehhHHHH
Q 010059 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKVVFC---ESVNLGHVSL 178 (519)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~--~~~~~~~---~SlplG~vrl 178 (519)
. .+...+|+|+|||++.+++++ +|.+.-. ...++|.--+
T Consensus 209 -~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~Df 252 (657)
T PTZ00186 209 -T-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDF 252 (657)
T ss_pred -C-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhH
Confidence 1 245689999999999999876 5544321 2345665544
No 82
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=89.58 E-value=2.5 Score=47.54 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCce
Q 010059 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (519)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (519)
+...|+..++.++.+ |-+.. .+|-|=-.---.+.+..+...-+..|+++ ++|+...=|-+.| |.... .+...
T Consensus 114 ~a~iL~~lk~~ae~~~g~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~---~~~~v 187 (627)
T PRK00290 114 SAMILQKLKKDAEDYLGEKVT--EAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK---GDEKI 187 (627)
T ss_pred HHHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHh-hhccC---CCCEE
Confidence 344566666665544 43322 33433211111233344555556679995 6888888887766 33321 34669
Q ss_pred EEEEECCCceEEEEeeCCe--Ee---eeeeeehhHHHHHH
Q 010059 146 LSVDIGGGSTEFVIGKRGK--VV---FCESVNLGHVSLSE 180 (519)
Q Consensus 146 lv~DIGGGStEl~~~~~~~--~~---~~~SlplG~vrl~e 180 (519)
+|+|+|||+|.+++++-+. +. .....++|..-+.+
T Consensus 188 lV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~ 227 (627)
T PRK00290 188 LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQ 227 (627)
T ss_pred EEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHH
Confidence 9999999999999875432 21 12335677755544
No 83
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.38 E-value=8.9 Score=38.89 Aligned_cols=144 Identities=16% Similarity=0.077 Sum_probs=85.9
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~v 92 (519)
..+..||||.+++++.+++.+ |.. +.+.+.++. ... -.++.++...+.++++.+... ...++..|
T Consensus 6 ~~~lgidIggt~i~~~l~d~~--g~~--l~~~~~~~~--~~~-----~~~~~~~~i~~~i~~~~~~~~----~~~~~iGI 70 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD--GEI--LLRERIPTP--TPD-----PEEAILEAILALVAELLKQAQ----GRVAIIGI 70 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC--CcE--EEEEEEecC--CCC-----chhHHHHHHHHHHHHHHHhcC----CcCceEEE
Confidence 458999999999999999653 443 333333211 110 114667777777777776442 11234555
Q ss_pred Eehhhhh---------c-----CChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEE
Q 010059 93 ATAAVRA---------A-----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (519)
Q Consensus 93 ATsA~R~---------A-----~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~ 158 (519)
+-+.--. + .+.-.|.+.+++.+|++|.|-+.-.=+-+.-.=.-... ..++.+.+-+|-| +.-.
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~~--~~~~~~~i~~gtG-IG~g 147 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGR--GIDDVVYITLGTG-IGGG 147 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCCC--CCCCEEEEEEccc-eeEE
Confidence 5432211 1 12255899999999999999887766555432111111 2245788888776 4455
Q ss_pred EeeCCeEeeeeeeehh
Q 010059 159 IGKRGKVVFCESVNLG 174 (519)
Q Consensus 159 ~~~~~~~~~~~SlplG 174 (519)
++-+|++....+..-|
T Consensus 148 iv~~g~l~~G~~g~ag 163 (314)
T COG1940 148 IIVNGKLLRGANGNAG 163 (314)
T ss_pred EEECCEEeecCCCccc
Confidence 6777887765544333
No 84
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=89.10 E-value=0.66 Score=49.13 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhcccc---------CCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 010059 400 EYLEAACLLHNIGHFT---------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (519)
Q Consensus 400 ~lL~~Aa~LhdiG~~I---------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k 454 (519)
..+.+||+|||+|+.. ++++|.+.|..++..--.=+.++.+.+..+..+++||..
T Consensus 247 l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~~a~~i~~RLk~pn~~~~~~~~li~~H~~ 310 (417)
T PRK13298 247 IDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAASLIKNLCKRFKIPSYIRNIAVLNTGFYFF 310 (417)
T ss_pred HHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 4589999999999853 457777888877755422368999999999999999964
No 85
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=88.96 E-value=4.6 Score=45.36 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCce
Q 010059 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (519)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (519)
....|+..++.++.+ |-+. ..+|-|=-.---.+.+..+...-+..|+++ ++|+...=|-+.| |... . .+...
T Consensus 130 ~a~iL~~lk~~ae~~lg~~v--~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~--~-~~~~v 203 (616)
T PRK05183 130 SAEILKALRQRAEETLGGEL--DGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAY-GLDS--G-QEGVI 203 (616)
T ss_pred HHHHHHHHHHHHHHHhCCCc--ceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-hccc--C-CCCEE
Confidence 345677777766654 4322 233433211111234455566666789997 6888888888776 3322 1 23568
Q ss_pred EEEEECCCceEEEEee--CCeEe---eeeeeehhHHHHHHh
Q 010059 146 LSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEK 181 (519)
Q Consensus 146 lv~DIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~ 181 (519)
+|+|+|||++.+++++ ++.+. ....-.+|..-+.+.
T Consensus 204 lV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~ 244 (616)
T PRK05183 204 AVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHL 244 (616)
T ss_pred EEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHH
Confidence 9999999999999876 44321 122346777665553
No 86
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=88.30 E-value=3.5 Score=46.06 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceE
Q 010059 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (519)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~l 146 (519)
...|+..++.+..+ |-+.. .+|-|--.---.+.+..+...-+..|+++ ++|+...=|-+.| |.... ..+...+
T Consensus 112 a~~L~~l~~~a~~~~~~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~--~~~~~vl 186 (595)
T TIGR02350 112 AMILQKLKKDAEAYLGEKVT--EAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKS--KKDEKIL 186 (595)
T ss_pred HHHHHHHHHHHHHHhCCCCC--eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHH-hhccc--CCCcEEE
Confidence 44566666655544 43322 23433221112234444555556689996 6788887777766 43321 1245689
Q ss_pred EEEECCCceEEEEee
Q 010059 147 SVDIGGGSTEFVIGK 161 (519)
Q Consensus 147 v~DIGGGStEl~~~~ 161 (519)
|+|+|||++.+++.+
T Consensus 187 V~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 187 VFDLGGGTFDVSILE 201 (595)
T ss_pred EEECCCCeEEEEEEE
Confidence 999999999999875
No 87
>PRK13410 molecular chaperone DnaK; Provisional
Probab=88.02 E-value=5.4 Score=45.23 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhcc
Q 010059 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (519)
Q Consensus 60 ls~e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~ 137 (519)
++++.+ +...|+..++.+..+ |.+.. .+|-|=-.---......+...-+..|+++ ++|+...=|-+.| |...
T Consensus 110 ~speel--~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~- 183 (668)
T PRK13410 110 FAPEEL--SAMILRKLADDASRYLGEPVT--GAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAY-GLDR- 183 (668)
T ss_pred EcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-cccc-
Confidence 454333 344566666666554 43322 23333111111123334455556679995 5889988888876 3322
Q ss_pred CCCCCCceEEEEECCCceEEEEee--CCeEe---eeeeeehhHHHHHH
Q 010059 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (519)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (519)
. .+...+|+|+|||++.+++++ ++.+. .....++|..-+.+
T Consensus 184 -~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~ 229 (668)
T PRK13410 184 -S-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDK 229 (668)
T ss_pred -C-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHH
Confidence 1 235689999999999999876 33221 12234567655544
No 88
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=88.01 E-value=5.3 Score=42.37 Aligned_cols=158 Identities=24% Similarity=0.331 Sum_probs=71.7
Q ss_pred EEEEEecccceeeeEEEEeCCCCEE-EEEeeeeeeeccCCCCcC--CCCCHHHH----HHHHHHHHH-HHHHHHHcCCCC
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFL-TIDTLKQPVILGRDLSSS--CSISTQSQ----ARSVESLLM-FRDIIQSHNISR 86 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~-~i~~~k~~vrLg~~~~~~--g~ls~e~i----~~~~~~L~~-f~~~~~~~~v~~ 86 (519)
=.+|||||-++.+.+++.. .|... ..-..+-....|.++-.. --.+++.. +.+++.|+. +.+++.+.|+++
T Consensus 3 GiAvDiGTTti~~~L~dl~-~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLE-TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEE-SSEEEEEEEETT-T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEcchhheeeEEEECC-CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3689999999999999986 45433 333444446688876431 00122222 223344444 345566668877
Q ss_pred ccEE---EEEehhh------------hhcCChHHHHHHH---HHHhCC------ceEeeC---hHHHHHHHHhhhh-ccC
Q 010059 87 DHTR---AVATAAV------------RAAENKDEFVECV---REKVGF------EVDVLT---GEQEAKFVYMGVL-QFL 138 (519)
Q Consensus 87 ~~i~---~vATsA~------------R~A~N~~~f~~~i---~~~tG~------~i~iIs---g~eEA~l~~~gv~-~~~ 138 (519)
++|. +++-.+| ..++=...|.+.. -.++|+ +|.++. |--=+-.. -|+. ..+
T Consensus 82 ~~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~i~~fVG~Div-Agl~a~~~ 160 (412)
T PF14574_consen 82 EDIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPNISGFVGADIV-AGLLATGM 160 (412)
T ss_dssp GGEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE----BTTB-HHHH-HHHHHHTC
T ss_pred HHeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCcccccccHHHH-HHHHhcCc
Confidence 6653 3444333 2222111111111 122355 233322 11111111 1111 123
Q ss_pred CCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHH
Q 010059 139 PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (519)
Q Consensus 139 ~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~v 176 (519)
...+++.|++|||. +.|++++.++++ +..|-|-|+.
T Consensus 161 ~~~~~~~LliDiGT-NgEivL~~~~~~-~a~S~AAGPA 196 (412)
T PF14574_consen 161 DESDEPSLLIDIGT-NGEIVLGNGGKL-LACSTAAGPA 196 (412)
T ss_dssp CC-SS-EEEEEESS-CEEEEEE-SS-E-EEEEEE--TC
T ss_pred ccCCCcEEEEEecC-CeEEEEecCCEE-EEEeccCChh
Confidence 33456799999987 679999998776 5778888874
No 89
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=87.94 E-value=4.2 Score=45.23 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEee--CCeEe---eeeeeehhHH
Q 010059 103 KDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHV 176 (519)
Q Consensus 103 ~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~--~~~~~---~~~SlplG~v 176 (519)
....+...-+..|+++ ++|+..+=|-+.| ++.... ..+..+|+|+|||++.+++++ ++.+. ...+-.+|..
T Consensus 150 qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y-~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~ 226 (602)
T PF00012_consen 150 QRQALRDAAELAGLNVLRLINEPTAAALAY-GLERSD--KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGR 226 (602)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEHHHHHHHHT-TTTSSS--SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred hhhcccccccccccccceeecccccccccc-cccccc--cccceeccccccceEeeeehhcccccccccccccccccccc
Confidence 3445555556789987 5787666555544 433322 345699999999999998865 55432 2344567776
Q ss_pred HHHHhh
Q 010059 177 SLSEKF 182 (519)
Q Consensus 177 rl~e~f 182 (519)
.+.+.+
T Consensus 227 ~~D~~l 232 (602)
T PF00012_consen 227 DFDEAL 232 (602)
T ss_dssp HHHHHH
T ss_pred eeccee
Confidence 665543
No 90
>PRK11678 putative chaperone; Provisional
Probab=87.53 E-value=5.8 Score=42.73 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHc-CCCCccEEEEEehhhhh------cCCh--HHHHHHHHHHhCCc-eEeeChHHHHHHHHhhhhccCC
Q 010059 70 ESLLMFRDIIQSH-NISRDHTRAVATAAVRA------AENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLP 139 (519)
Q Consensus 70 ~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~------A~N~--~~f~~~i~~~tG~~-i~iIsg~eEA~l~~~gv~~~~~ 139 (519)
..|+.+++.++.+ |.+.. .+|-|--..- ..|+ ..++....+..|++ +++++...=|-+.| |. .++
T Consensus 132 ~iL~~lk~~ae~~~g~~v~--~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y-~~--~~~ 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAIT--QAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF-EA--TLT 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh-cc--ccC
Confidence 3456666666543 54332 3455533321 2233 34567777788997 57889888888877 32 222
Q ss_pred CCCCceEEEEECCCceEEEEee
Q 010059 140 VFDRLVLSVDIGGGSTEFVIGK 161 (519)
Q Consensus 140 ~~~~~~lv~DIGGGStEl~~~~ 161 (519)
.++..+|+|+|||++.+++.+
T Consensus 207 -~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 207 -EEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred -CCCeEEEEEeCCCeEEEEEEE
Confidence 245689999999999999875
No 91
>PRK13321 pantothenate kinase; Reviewed
Probab=87.18 E-value=13 Score=36.78 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=68.5
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+-+||||-.++++-+++ + + +++...+.++....+ . + +.+..+.++++.++.+..++..++-
T Consensus 2 iL~IDIGnT~ik~gl~~-~--~--~i~~~~~~~T~~~~~--------~---~---~~~~~l~~l~~~~~~~~~~i~~i~v 62 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-G--D--RLLRSFRLPTDKSRT--------S---D---ELGILLLSLFRHAGLDPEDIRAVVI 62 (256)
T ss_pred EEEEEECCCeEEEEEEE-C--C--EEEEEEEEecCCCCC--------H---H---HHHHHHHHHHHHcCCChhhCCeEEE
Confidence 35799999999999986 2 2 344444433322111 1 2 2223333444445543334555665
Q ss_pred hhhhhcCChHHHHHHHHHHhCCceEeeChH-----HHHH-----------HHHhhhhccCCCCCCceEEEEECCCceEEE
Q 010059 95 AAVRAAENKDEFVECVREKVGFEVDVLTGE-----QEAK-----------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (519)
Q Consensus 95 sA~R~A~N~~~f~~~i~~~tG~~i~iIsg~-----eEA~-----------l~~~gv~~~~~~~~~~~lv~DIGGGStEl~ 158 (519)
+.+..+. ...+.+.+++..+.++.+++.. +.+| ....|+.... ..++.+|+|.|..-|==.
T Consensus 63 ssVvp~~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~--~~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 63 SSVVPPL-NYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLY--PDRNLIVVDFGTATTFDC 139 (256)
T ss_pred EeecccH-HHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHc--CCCCEEEEECCCceEEEE
Confidence 5666433 4455555666567776665321 1111 1222222222 223689999999988655
Q ss_pred EeeCCeEe
Q 010059 159 IGKRGKVV 166 (519)
Q Consensus 159 ~~~~~~~~ 166 (519)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 54554443
No 92
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=0.56 Score=52.86 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhhccccCCCchhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 010059 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 398 ~~~lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~ 453 (519)
++.+|-+||++||||+-= ...|..-++.....-=.-.|++.+|..++|.+++.|=
T Consensus 482 ~~elLylAaLfHDIaKGR-ggDHs~lGA~~a~~fc~~hGL~~~e~~lvaWLVe~HL 536 (867)
T COG2844 482 KRELLYLAALFHDIAKGR-GGDHSILGAEDARRFCERHGLNSRETELVAWLVENHL 536 (867)
T ss_pred ChhHHHHHHHHHHhhcCC-CCchHHhhHHHHHHHHHHcCCCHHHhHHHHHHHHHHH
Confidence 578999999999999864 4556676766664322268999999999999998874
No 93
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=86.83 E-value=5.6 Score=45.08 Aligned_cols=107 Identities=16% Similarity=0.240 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCce
Q 010059 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (519)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (519)
+...|+..++.++.+ |-+.. .+|-|=-.---...+..+...-+..|+++ ++|+...=|-+.| |... . .....
T Consensus 155 ~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~v 228 (663)
T PTZ00400 155 GAFVLEKMKETAESYLGRKVK--QAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF-GMDK--N-DGKTI 228 (663)
T ss_pred HHHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHh-cccc--C-CCcEE
Confidence 344566666666554 44322 33433111111233444555556679994 6888887777766 4322 1 23568
Q ss_pred EEEEECCCceEEEEee--CCeEe---eeeeeehhHHHHHH
Q 010059 146 LSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (519)
Q Consensus 146 lv~DIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (519)
+|+|+|||++.+++++ +|.+. .....++|...+.+
T Consensus 229 lV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~ 268 (663)
T PTZ00400 229 AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQ 268 (663)
T ss_pred EEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHH
Confidence 9999999999999875 55432 22334666655544
No 94
>PLN03184 chloroplast Hsp70; Provisional
Probab=86.56 E-value=6.6 Score=44.62 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCC--eEe---eeeeeehhHHHH
Q 010059 105 EFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG--KVV---FCESVNLGHVSL 178 (519)
Q Consensus 105 ~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~--~~~---~~~SlplG~vrl 178 (519)
..+...-+..|+++ ++|+...=|-+.| |... . .+...+|+|+|||++.+++++-+ .+. .....++|.-.+
T Consensus 189 ~a~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~--~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~df 264 (673)
T PLN03184 189 TATKDAGRIAGLEVLRIINEPTAASLAY-GFEK--K-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 264 (673)
T ss_pred HHHHHHHHHCCCCeEEEeCcHHHHHHHh-hccc--C-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHH
Confidence 34555556779995 5788887777766 3322 1 23568999999999999887533 221 223456777655
Q ss_pred HHh
Q 010059 179 SEK 181 (519)
Q Consensus 179 ~e~ 181 (519)
.+.
T Consensus 265 D~~ 267 (673)
T PLN03184 265 DKR 267 (673)
T ss_pred HHH
Confidence 543
No 95
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=86.44 E-value=8.7 Score=35.24 Aligned_cols=136 Identities=17% Similarity=0.094 Sum_probs=86.0
Q ss_pred EEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe--
Q 010059 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT-- 94 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT-- 94 (519)
.||||.+++++.+++.+ |. ++++.+.++. . -.++.++.+.+.++++....... -..||.
T Consensus 1 gidig~~~i~~~l~d~~--g~--ii~~~~~~~~--~-------~~~~~~~~l~~~i~~~~~~~~~~------gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD--GE--IIYSESIPTP--T-------SPEELLDALAELIERLLADYGRS------GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETT--SC--EEEEEEEEHH--S-------SHHHHHHHHHHHHHHHHHHHTCE------EEEEEESS
T ss_pred CEEECCCEEEEEEECCC--CC--EEEEEEEECC--C-------CHHHHHHHHHHHHHHHHhhcccc------cEEEeccc
Confidence 48999999999999764 43 5666666655 1 14566677777777766544311 122222
Q ss_pred -----------hhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCC
Q 010059 95 -----------AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (519)
Q Consensus 95 -----------sA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~ 163 (519)
+..-.-.| -.+.+.++++++++|.+.+.-.=+-+...-.-.... .++.+.+.+|-| ....++.+|
T Consensus 62 ~v~~~~g~i~~~~~~~~~~-~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~~--~~~~~~l~ig~G-iG~~ii~~g 137 (179)
T PF00480_consen 62 IVDSEKGRIISSPNPGWEN-IPLKEELEERFGVPVIIENDANAAALAEYWFGAAKD--CDNFLYLYIGTG-IGAGIIING 137 (179)
T ss_dssp EEETTTTEEEECSSGTGTT-CEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTTT--TSSEEEEEESSS-EEEEEEETT
T ss_pred cCcCCCCeEEecCCCCccc-CCHHHHhhcccceEEEEecCCCcceeehhhcCccCC--cceEEEEEeecC-CCcceeccc
Confidence 22222233 558889999999999999987766555432222222 245899999886 677788899
Q ss_pred eEeeeeeeehhH
Q 010059 164 KVVFCESVNLGH 175 (519)
Q Consensus 164 ~~~~~~SlplG~ 175 (519)
++....+-..|-
T Consensus 138 ~i~~G~~~~aGe 149 (179)
T PF00480_consen 138 KIYRGSNGFAGE 149 (179)
T ss_dssp EEETTTTS-TTG
T ss_pred ccccCCCccccc
Confidence 887654443333
No 96
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=86.34 E-value=2.4 Score=46.49 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i~ 90 (519)
.+..||+||.|+|..+++. +|.. +.....+...-......| +..++. .+.+++++++ ++++.++++.+|.
T Consensus 4 ~~lgID~GTts~Ka~l~d~--~G~~--l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~---~~~~~~~~~~~I~ 76 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDL--NGNQ--IAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQ---ALQKAGIPASDIA 76 (520)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHH---HHHHcCCCccceE
Confidence 6889999999999999974 4543 332222211111111122 334443 4455556655 4444566656799
Q ss_pred EEEehhhh
Q 010059 91 AVATAAVR 98 (519)
Q Consensus 91 ~vATsA~R 98 (519)
+++.++.+
T Consensus 77 aI~~s~~~ 84 (520)
T PRK10939 77 AVSATSMR 84 (520)
T ss_pred EEEEECCc
Confidence 99877653
No 97
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=85.87 E-value=1 Score=47.33 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcc--------------ccC---CCchhhh
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH--------------FTS---KKGYHKQ 423 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~--------------~I~---~~~h~~H 423 (519)
.|+.-|+.+|..|...+..... +.. ........++++||++||||. +-. ...|..+
T Consensus 41 tHslev~~i~r~~~~~l~~~~~--~~~-----~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q 113 (381)
T TIGR01353 41 THSLEVAQVGRSIANLIGLRYD--LEL-----EELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQ 113 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--ccc-----ccccccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHH
Confidence 8999999999999887753111 000 012235689999999999995 222 3467788
Q ss_pred hHHHHHcCCC----CCCCCHHHHHHHHHHHHhcc
Q 010059 424 SCHIIMNGDH----LYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 424 s~yiI~ns~~----l~G~s~~E~~~iA~iaryh~ 453 (519)
|+-|+..-+. ..|++- -...++.++.|-.
T Consensus 114 ~~ri~~~Le~~~~~~~GLNL-T~~tL~~i~KYp~ 146 (381)
T TIGR01353 114 TFRILTTLEKRRRAKGGLNL-TWRTLAGILKYPR 146 (381)
T ss_pred HHHHHHHHhhccCCcCCcCC-CHHHHHHHHcCCc
Confidence 8888865321 246653 3455666677754
No 98
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=85.68 E-value=2.5 Score=45.05 Aligned_cols=102 Identities=18% Similarity=0.296 Sum_probs=63.0
Q ss_pred CceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~ 91 (519)
.+++.+||-|+.|.|..+++- +|++.-+.. .. +-+...+.|-...+..+---.++.-.++.+.+.++++.+|-+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~--~g~iva~~q--~e--~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE--DGNIVAIAQ--RE--FTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECC--CCCchhhhh--hh--hhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 467999999999999999964 354322221 11 112233446555555555555555556666667888888888
Q ss_pred EE-----------------------------ehhhhhcCChHHHHHHHHHHhCCceE
Q 010059 92 VA-----------------------------TAAVRAAENKDEFVECVREKVGFEVD 119 (519)
Q Consensus 92 vA-----------------------------TsA~R~A~N~~~f~~~i~~~tG~~i~ 119 (519)
+| |+.+=+--+.+...+.|+++||+.+.
T Consensus 78 IGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~d 134 (499)
T COG0554 78 IGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLD 134 (499)
T ss_pred EEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccC
Confidence 87 23332223333466777788888764
No 99
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=85.06 E-value=4.8 Score=44.98 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCC
Q 010059 66 ARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDR 143 (519)
Q Consensus 66 ~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~ 143 (519)
+-+...|+.+++.++.+ |-+. ..+|-|=-..--.+++..+...-+..|+++ ++|+...=|-+.| |... . .++
T Consensus 120 ei~a~iL~~lk~~ae~~lg~~v--~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~--~-~~~ 193 (595)
T PRK01433 120 EIAAEIFIYLKNQAEEQLKTNI--TKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY-GLNK--N-QKG 193 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc--ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH-hccc--C-CCC
Confidence 33445677777776654 4322 244555333222345566666677789996 6888888888776 4322 1 234
Q ss_pred ceEEEEECCCceEEEEee
Q 010059 144 LVLSVDIGGGSTEFVIGK 161 (519)
Q Consensus 144 ~~lv~DIGGGStEl~~~~ 161 (519)
..+|+|+|||++.+++++
T Consensus 194 ~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 194 CYLVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEEEECCCCcEEEEEEE
Confidence 589999999999999875
No 100
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=84.53 E-value=1 Score=45.98 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCc--------------hhhhhHH
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG--------------YHKQSCH 426 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~--------------h~~Hs~y 426 (519)
+|.-.|+++|..+.+. +. .-+|.||-++|+|||||+-..++. |---++.
T Consensus 162 eHtl~v~~~~~~l~~~----y~-------------~~n~dll~agalLHDiGKi~E~~~~~~~~yT~eG~LlGHi~lg~~ 224 (314)
T PRK13480 162 YHVVSMLRLAKSICDL----YP-------------SLNKDLLYAGIILHDLGKVIELSGPVSTTYTLEGNLLGHISIMVN 224 (314)
T ss_pred HHHHHHHHHHHHHHHh----cc-------------ccCHHHHHHHHHHHHhhhHHHhcCCCccCccccCEeccHHHHHHH
Confidence 5777788888876542 21 125789999999999998665543 2222343
Q ss_pred HHHcC-CCCCCCCHHHHHHHHH-HHHhccC
Q 010059 427 IIMNG-DHLYGYSTDEIKLIAL-LTRFHRK 454 (519)
Q Consensus 427 iI~ns-~~l~G~s~~E~~~iA~-iaryh~k 454 (519)
.|... . =.|+..++...+-. |.+.|++
T Consensus 225 ~i~~~~~-~l~~~~e~~~~L~H~ILSHHG~ 253 (314)
T PRK13480 225 EIAKAAD-ELQIDGEEVLILQHMVLSHHGK 253 (314)
T ss_pred HHHHHHH-HcCCCHHHHHHHHhhhhccCCc
Confidence 44321 1 13666555554444 6677764
No 101
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=84.52 E-value=4.1 Score=44.20 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=51.0
Q ss_pred CceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CC-CHHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SI-STQSQARSVESLLMFRDIIQSHNISRDH 88 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~l-s~e~i~~~~~~L~~f~~~~~~~~v~~~~ 88 (519)
.+.++.||+||.|.|..|++.. ++.. +.....+++-.. .+.| .- +.|-.+..++||+.-.+.+...+.+...
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~-~~e~--l~~~~~~i~~~~--~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~ 79 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK-NGEL--LSLAQKEITQEF--PKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVG 79 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC-CCcc--ceeeeeeeeeec--CCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4689999999999999999854 3432 222222222211 1112 22 4566777888888888777666665555
Q ss_pred EEEEEehhhhh
Q 010059 89 TRAVATAAVRA 99 (519)
Q Consensus 89 i~~vATsA~R~ 99 (519)
+.|++.+--|+
T Consensus 80 ~~~igv~~qr~ 90 (516)
T KOG2517|consen 80 ATCIGVVNQRE 90 (516)
T ss_pred cEEEEEEecCC
Confidence 66666554444
No 102
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=84.46 E-value=1.2 Score=45.90 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcccc----------------CCCchhhhh
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT----------------SKKGYHKQS 424 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I----------------~~~~h~~Hs 424 (519)
+|+.-|+.+|..+...|. + ...++++||++||||.-= ..-.|..+|
T Consensus 65 ~Hsl~V~~iar~~~~~l~---------------~---~~~l~~aaaL~HDiGh~PfgH~gE~~l~~~~~~~~~f~hn~~s 126 (336)
T PRK01286 65 THTLEVAQIARTIARALR---------------L---NEDLTEAIALGHDLGHTPFGHAGEDALNELMKEYGGFEHNEQS 126 (336)
T ss_pred HHHHHHHHHHHHHHHHhC---------------C---CHHHHHHHHHHhcCCCCCCcchHHHHHHHhccccCCCcHHHHH
Confidence 799999999999987652 1 236899999999999531 123556666
Q ss_pred HHHHHcCCC-CCCCCHHHHHHHHHHHHhcc
Q 010059 425 CHIIMNGDH-LYGYSTDEIKLIALLTRFHR 453 (519)
Q Consensus 425 ~yiI~ns~~-l~G~s~~E~~~iA~iaryh~ 453 (519)
+.|+..-+. -.|++--- ..++.+..|-.
T Consensus 127 ~ri~~~l~~~~~glnLT~-~tL~gilKyp~ 155 (336)
T PRK01286 127 LRVVDKLEKRYDGLNLTW-EVREGILKHSG 155 (336)
T ss_pred HHHHHHHhhcCCCccCCH-HHHhhHHhCCc
Confidence 666644431 12444332 34444555543
No 103
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=83.55 E-value=2.1 Score=37.14 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=25.5
Q ss_pred eEEEEECCCceEEEEeeCCeEeeeeeeehhHHH
Q 010059 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVS 177 (519)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vr 177 (519)
.+++|||++.|-+++++.+...+...+|+|...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~ 33 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVP 33 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES-----
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEeccc
Confidence 368999999999999999999999999999543
No 104
>PRK00047 glpK glycerol kinase; Provisional
Probab=83.27 E-value=4.9 Score=43.85 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=43.5
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i 89 (519)
+.+..||+||.|+|..+++. +|+.. .....++.+ .....| +.+++. .+.+++++++ ++++.++++.+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~--~g~~~--~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~~~~---~~~~~~~~~~~I 75 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH--DGNIV--SVAQKEFTQ--IFPQPGWVEHDPNEIWASQLSVIAE---ALAKAGISPDQI 75 (498)
T ss_pred CEEEEEecCCCceEEEEECC--CCCEE--EEEeeeccc--cCCCCCeEeeCHHHHHHHHHHHHHH---HHHHcCCChhHe
Confidence 36788999999999999964 45543 332222221 111223 334444 3444444444 445557665678
Q ss_pred EEEEehhh
Q 010059 90 RAVATAAV 97 (519)
Q Consensus 90 ~~vATsA~ 97 (519)
.+++-++.
T Consensus 76 ~~Igis~~ 83 (498)
T PRK00047 76 AAIGITNQ 83 (498)
T ss_pred eEEEEecC
Confidence 88886655
No 105
>PRK13318 pantothenate kinase; Reviewed
Probab=82.84 E-value=19 Score=35.60 Aligned_cols=128 Identities=13% Similarity=0.180 Sum_probs=66.7
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+-+||||-..+++.+++ + +. ++++.+.++.... +.+. .+..+.++++.++.+..++..++=
T Consensus 2 iL~IDIGnT~iK~al~d-~--g~--i~~~~~~~t~~~~--------~~~~------~~~~l~~l~~~~~~~~~~i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-G--GK--LVAHWRISTDSRR--------TADE------YGVWLKQLLGLSGLDPEDITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE-C--CE--EEEEEEEeCCCCC--------CHHH------HHHHHHHHHHHcCCCcccCceEEE
Confidence 45799999999999986 2 33 3444333322111 1111 223344455666653334555666
Q ss_pred hhhhhcCChHHHHHHHHHHhCCce-EeeChHHHH-----------------HHHHhhhhccCCCCCCceEEEEECCCceE
Q 010059 95 AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEA-----------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTE 156 (519)
Q Consensus 95 sA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA-----------------~l~~~gv~~~~~~~~~~~lv~DIGGGStE 156 (519)
+.+....+ +.+.+.++...+.++ -+.+ .++. .....|+....+ ++.+|+|.|.+-|=
T Consensus 63 ssVvp~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~---~~~ivid~GTA~t~ 137 (258)
T PRK13318 63 SSVVPSVM-HSLERMCRKYFNIEPLVVVG-PGVKTGINIKVDNPKEVGADRIVNAVAAYELYG---GPLIVVDFGTATTF 137 (258)
T ss_pred EEecCchH-HHHHHHHHHHhCCCCeEEEC-CCcCCCCceecCChhhcchHHHHHHHHHHHHcC---CCEEEEEcCCceEE
Confidence 66654333 444455554444443 2222 2111 022233333332 36899999999887
Q ss_pred EEEeeCCeEe
Q 010059 157 FVIGKRGKVV 166 (519)
Q Consensus 157 l~~~~~~~~~ 166 (519)
=.+-.+|+..
T Consensus 138 d~v~~~g~~~ 147 (258)
T PRK13318 138 DVVSAKGEYL 147 (258)
T ss_pred EEEcCCCcEE
Confidence 6664555543
No 106
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=82.81 E-value=2.3 Score=38.61 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=38.0
Q ss_pred HHHHHHhhhhccccCCCc-----------hhhhhHHHHHcCCCCCCCCHHHHHHHHHHH---HhccCCCCCCcchhhccC
Q 010059 402 LEAACLLHNIGHFTSKKG-----------YHKQSCHIIMNGDHLYGYSTDEIKLIALLT---RFHRKKFPRSHHAFLEEF 467 (519)
Q Consensus 402 L~~Aa~LhdiG~~I~~~~-----------h~~Hs~yiI~ns~~l~G~s~~E~~~iA~ia---ryh~k~~~~~~~~~~~~L 467 (519)
|-+||+|||||..++.++ +|+|-.--++.-- |++.-++-+++-+ ||-+.. .+.++..|
T Consensus 51 lVaaALLHDiGhl~~~~g~~ps~~~i~d~~hee~~~~vL~~~----f~~~v~e~vrlHv~akR~lca~----~p~Yf~~l 122 (186)
T COG4341 51 LVAAALLHDIGHLYADYGHTPSAAGIDDPFHEEFATPVLRKL----FPPFVREPVRLHVGAKRYLCAV----DPAYFDDL 122 (186)
T ss_pred HHHHHHHHhHHHHhhhcCCCccccccchhHHHHHhHHHHHHh----CcHHHHHHHHHHHhhhhhhhcc----ChHHHhhc
Confidence 779999999999998876 3444444444331 4456666666644 444432 34556666
Q ss_pred ChHH
Q 010059 468 PEQA 471 (519)
Q Consensus 468 ~~~~ 471 (519)
++..
T Consensus 123 s~as 126 (186)
T COG4341 123 SPAS 126 (186)
T ss_pred CHHH
Confidence 6543
No 107
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=82.69 E-value=1.6 Score=46.71 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHH-hccc-ccchhhhhhcccCcchHHHHHHHHHhhhhccc----------------cCCCchhh
Q 010059 361 KAGAQCASIAKDIFEGLR-KCDK-LYNNQVKLIASFEDKDLEYLEAACLLHNIGHF----------------TSKKGYHK 422 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~-~~~~-l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~----------------I~~~~h~~ 422 (519)
.|+.-|+.+|..|...+. .... +. .. .....|+++||++||||.- ...-.|.-
T Consensus 61 tHslev~~i~r~~~~~~~~~~~~~~~--------~~-~~~~~l~~a~~L~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNa 131 (432)
T PRK05318 61 THSLEVAQIGTGIVAQLKKEKQPELK--------PL-LPSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNG 131 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccc--------cc-cccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCchHH
Confidence 899999999999998873 2211 00 00 1145789999999999952 12346777
Q ss_pred hhHHHHHcCCC---CCCCCHHHHHHHHHHHHhc
Q 010059 423 QSCHIIMNGDH---LYGYSTDEIKLIALLTRFH 452 (519)
Q Consensus 423 Hs~yiI~ns~~---l~G~s~~E~~~iA~iaryh 452 (519)
||+-||..-+. -.|++-- ...++.++.|-
T Consensus 132 QslRIlt~Le~~~~~~GLNLT-~~tL~gilKYp 163 (432)
T PRK05318 132 QTFRILTKLEPYTEHFGMNLT-RRTLLGILKYP 163 (432)
T ss_pred HHHHHHHHHhccCCCCCcccc-HHHHHHHHcCC
Confidence 88888865531 2466544 44555667773
No 108
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=82.66 E-value=5.1 Score=43.31 Aligned_cols=75 Identities=11% Similarity=0.248 Sum_probs=43.0
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i~ 90 (519)
.+..||+||.|+|..+++. +|++.-..+.+.+..+ .....| +.+++. .+.+++++++... + +++.+|.
T Consensus 2 ~ilgiD~GTss~K~~l~d~--~g~~va~~~~~~~~~~--~~~~~g~~eqd~~~~w~~~~~~~~~l~~---~--~~~~~I~ 72 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR--QGKIVASASTPNATKQ--AIENNDYHIWDLEAIWQKLADCCQQINS---E--LTEKHIR 72 (465)
T ss_pred eEEEEecCCCcEEEEEEcC--CCCEEEEEecccccCC--CCCCCCceeeCHHHHHHHHHHHHHHHHh---h--cChhceE
Confidence 4678999999999999974 4654333332222212 111222 345544 4555666666543 2 3334688
Q ss_pred EEEehhh
Q 010059 91 AVATAAV 97 (519)
Q Consensus 91 ~vATsA~ 97 (519)
+|+.++.
T Consensus 73 aI~~s~~ 79 (465)
T TIGR02628 73 GIAVTTF 79 (465)
T ss_pred EEEEecc
Confidence 8887664
No 109
>PRK13411 molecular chaperone DnaK; Provisional
Probab=82.53 E-value=11 Score=42.55 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhcc
Q 010059 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (519)
Q Consensus 60 ls~e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~ 137 (519)
++++.+- ...|+..++.++.+ |.+.. .+|-|=-.---...+..+...-+..|+++ ++|+...=|-+.| |....
T Consensus 108 ~~peei~--a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y-~~~~~ 182 (653)
T PRK13411 108 YTPQEIS--AMILQKLKQDAEAYLGEPVT--QAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY-GLDKQ 182 (653)
T ss_pred ECHHHHH--HHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-ccccc
Confidence 4454443 33466666666554 43322 23433221112234445555666789995 6888888777766 33221
Q ss_pred CCCCCCceEEEEECCCceEEEEee
Q 010059 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (519)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~ 161 (519)
..+...+|+|+|||++.+++.+
T Consensus 183 --~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 183 --DQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred --CCCCEEEEEEcCCCeEEEEEEE
Confidence 1245689999999999998865
No 110
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=82.48 E-value=15 Score=41.55 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCce-EeeChHHHHHHHHhhhhccCCCCCCceE
Q 010059 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (519)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i-~iIsg~eEA~l~~~gv~~~~~~~~~~~l 146 (519)
...|+..++.++.+ |-+.. .+|-|=-.---.+.+..+...-+..|+++ ++|+...=|-+.|. ...... .+...+
T Consensus 122 a~iL~~lk~~ae~~~g~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~-~~~~~~-~~~~vl 197 (653)
T PTZ00009 122 SMVLQKMKEIAEAYLGKQVK--DAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG-LDKKGD-GEKNVL 197 (653)
T ss_pred HHHHHHHHHHHHHHhCCCcc--eeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHh-hhccCC-CCCEEE
Confidence 34556666666554 43322 22333111111233445556666789996 68888888877763 332211 235689
Q ss_pred EEEECCCceEEEEee--CCeEeee---eeeehhHHHHHH
Q 010059 147 SVDIGGGSTEFVIGK--RGKVVFC---ESVNLGHVSLSE 180 (519)
Q Consensus 147 v~DIGGGStEl~~~~--~~~~~~~---~SlplG~vrl~e 180 (519)
|+|+|||++.+++++ ++.+.-. ....+|..-+.+
T Consensus 198 v~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~ 236 (653)
T PTZ00009 198 IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDN 236 (653)
T ss_pred EEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHH
Confidence 999999999998865 4433211 123566654433
No 111
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=81.34 E-value=1.6 Score=46.68 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccc-CcchHHHHHHHHHhhhhcc
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASF-EDKDLEYLEAACLLHNIGH 413 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~-~~~~~~lL~~Aa~LhdiG~ 413 (519)
.|+.-|+.+|..|...+..... .+..+. .. ......++++||++||||.
T Consensus 64 tHsleV~~i~r~i~~~l~~~l~--~~~~~~--~~~~~~~~~lv~aa~L~HDiGh 113 (440)
T PRK01096 64 THSLEVSCVGRSLGMRVGETLK--EEKLPD--WISPADIGAIVQSACLAHDIGN 113 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhcccc--ccccchHHHHHHHHHHHhcCCC
Confidence 7999999999988776653210 000000 00 1123479999999999995
No 112
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=81.30 E-value=28 Score=34.40 Aligned_cols=126 Identities=20% Similarity=0.284 Sum_probs=73.2
Q ss_pred EEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCCcc--EEEEE
Q 010059 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDH--TRAVA 93 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~-f~~~~~~~~v~~~~--i~~vA 93 (519)
-||.|+.+++.++++. +|. ++.+.+. ...+.....++.+.+.|+. +.+++++.+.+..+ ..+++
T Consensus 2 GIDgGgTkt~~vl~d~--~g~--il~~~~~---------~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGN--ILGRGKG---------GGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEECSSEEEEEEEET--TSE--EEEEEEE---------S-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEeeChheeeeEEEeC--CCC--EEEEEEe---------CCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 4999999999999974 344 3322211 1122233344444444432 34445555665433 44567
Q ss_pred ehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEee
Q 010059 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (519)
Q Consensus 94 TsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~ 167 (519)
.+.+=.+.+...|...+... ++.+.+.-.- .+.+.. . ++++++=-|.||.=+..-++|++..
T Consensus 69 ~aG~~~~~~~~~~~~~~~~~---~v~~~~Da~~---al~~~~---~---~~giv~I~GTGS~~~~~~~~g~~~r 130 (271)
T PF01869_consen 69 AAGYGRAGDEQEFQEEIVRS---EVIVVNDAAI---ALYGAT---A---EDGIVVIAGTGSIAYGRDRDGRVIR 130 (271)
T ss_dssp EEEEEETTTTTHHHHHHHHH---EEEEEEHHHH---HHHHHS---T---SSEEEEEESSSEEEEEEETTSEEEE
T ss_pred EeeecCcccccchhhcceEE---EEEEEHHHHH---HhCCCC---C---CcEEEEEcCCCceEEEEEcCCcEEE
Confidence 77776667776777666555 7777776433 233322 2 2367777788888887666787654
No 113
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=81.02 E-value=7.1 Score=40.53 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=73.7
Q ss_pred CCceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE
Q 010059 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR 90 (519)
Q Consensus 11 ~~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~ 90 (519)
+...+.-||.||-+.++++.+- +. .+.+.+... ..+ .+. +.+++++-.+. .+.+-.+|-
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d---~~-~I~~~~~~~---t~g-------~p~----~~~~l~~~le~---l~~~~~~I~ 191 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMED---GK-EILYGFYVS---TKG-------RPI----AEKALKEALEE---LGEKLEEIL 191 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeC---CC-eEEEEEEEc---CCC-------Chh----HHHHHHHHHHH---cccChheee
Confidence 4457899999999999999853 22 333333111 112 112 23344433332 233212343
Q ss_pred EEE-ehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeee
Q 010059 91 AVA-TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (519)
Q Consensus 91 ~vA-TsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~ 169 (519)
.++ |-==|+.-+...+.|.+ ..|----+.|+....|.-+ .|+||||-=+-.+..+||.+....
T Consensus 192 ~~~~TGYGR~~v~~~~~aD~~-------------~~Ei~ah~kgA~~f~p~~d---tIiDIGGQD~K~i~i~dG~v~df~ 255 (396)
T COG1924 192 GLGVTGYGRNLVGAALGADKV-------------VVEISAHAKGARYFAPDVD---TVIDIGGQDSKVIKLEDGKVDDFT 255 (396)
T ss_pred eeeeecccHHHhhhhhcCCcc-------------eeeeehhHHHHHHhCCCCc---EEEEecCcceeEEEEeCCeeeeeE
Confidence 333 43334433322233322 2344556778887766322 999999999999999999875321
Q ss_pred ---eeehhHHHHHHhh
Q 010059 170 ---SVNLGHVSLSEKF 182 (519)
Q Consensus 170 ---SlplG~vrl~e~f 182 (519)
-=.-|+=|+-|.+
T Consensus 256 mN~~CAAGtGrFLE~~ 271 (396)
T COG1924 256 MNDKCAAGTGRFLEVI 271 (396)
T ss_pred eccccccccchHHHHH
Confidence 1123555566554
No 114
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=80.72 E-value=9.6 Score=42.46 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCc-eEeeChHHHHHHHHhhhhcc
Q 010059 59 SISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF 137 (519)
Q Consensus 59 ~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~-i~iIsg~eEA~l~~~gv~~~ 137 (519)
.++++.+. ...|+.+++.++.+--... -.+|-|=-.--...++.-...+-+..|++ +++|+..-=|-|.| |....
T Consensus 94 ~~~~eeis--a~~L~~lk~~ae~~lg~~v-~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlay-g~~~~ 169 (579)
T COG0443 94 KYTPEEIS--AMILTKLKEDAEAYLGEKV-TDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY-GLDKG 169 (579)
T ss_pred eeCHHHHH--HHHHHHHHHHHHHhhCCCc-ceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-HhccC
Confidence 45555443 4567777777776633222 24465533333334455666666677876 57899888888887 33322
Q ss_pred CCCCCCceEEEEECCCceEEEEee
Q 010059 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (519)
Q Consensus 138 ~~~~~~~~lv~DIGGGStEl~~~~ 161 (519)
.+...+|+|+|||++.+++.+
T Consensus 170 ---~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 170 ---KEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ---CCcEEEEEEcCCCCEEEEEEE
Confidence 345699999999999999865
No 115
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=78.64 E-value=9.2 Score=41.82 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=43.8
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCH-HHHHHHHHHHHHHHHHHHHcCCCCccE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDHT 89 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~-e~i~~~~~~L~~f~~~~~~~~v~~~~i 89 (519)
+++.+||+|+.++|.++++.+ ++ +++...+..-..-. ...| .-++ +-.+.+++++++..+ +..++..+|
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~-~~--~~~~~~~~~~~~~~--~~~g~~e~d~~~~w~~~~~ai~~l~~---~~~~~~~~I 75 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDED-GG--EVVATARFENPVST--PQPGWAEQDPDELWQAILEALRQLLE---ESKIDPDAI 75 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCC-CC--eEEEEeeccccccC--CCCCCcccCHHHHHHHHHHHHHHHHH---hcccChhhc
Confidence 579999999999999999764 23 33433322211111 1122 1233 444555566665554 444565678
Q ss_pred EEEEehhh
Q 010059 90 RAVATAAV 97 (519)
Q Consensus 90 ~~vATsA~ 97 (519)
.+|+-++.
T Consensus 76 ~aI~is~~ 83 (502)
T COG1070 76 AAIGISGQ 83 (502)
T ss_pred eEEEEecc
Confidence 88875443
No 116
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=78.62 E-value=7.7 Score=42.74 Aligned_cols=78 Identities=8% Similarity=0.013 Sum_probs=42.6
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeec------cC--CCC-cCC--CCCHHHH-HHHHHHHHHHHHHHHH
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVIL------GR--DLS-SSC--SISTQSQ-ARSVESLLMFRDIIQS 81 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrL------g~--~~~-~~g--~ls~e~i-~~~~~~L~~f~~~~~~ 81 (519)
.+..||+||.|+|..|++. .+|+..-. ...++.+ .. +.. ..| +.+++.+ +.++++ +++.+++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~-~~G~~~a~--~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~---~~~~~~~ 75 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDV-ATGEEIAT--AVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAA---IPTVLAE 75 (536)
T ss_pred eEEEEecCCCceEEEEEEC-CCCcEeee--eeeccccccccccCCCccccCCCCccccCHHHHHHHHHHH---HHHHHHH
Confidence 3688999999999999973 23543322 2222221 00 000 122 3334443 333333 4445556
Q ss_pred cCCCCccEEEEEehhh
Q 010059 82 HNISRDHTRAVATAAV 97 (519)
Q Consensus 82 ~~v~~~~i~~vATsA~ 97 (519)
.++++.+|.+++.++.
T Consensus 76 ~~~~~~~I~aI~~s~q 91 (536)
T TIGR01234 76 LGVDPADVVGIGVDFT 91 (536)
T ss_pred cCCCHHHEEEEEEecC
Confidence 6766567999887665
No 117
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=78.56 E-value=59 Score=32.85 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=80.1
Q ss_pred EEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE--EEEe
Q 010059 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR--AVAT 94 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~--~vAT 94 (519)
.||||.+.+++.+++.. |. ++...+.+.. .-.++.++.+.+.+++|.+.+ +.+..++. .||.
T Consensus 2 gidig~t~~~~~l~d~~--g~--i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~---~~~~~~i~gIgva~ 65 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDEE--GN--ILSKWKVPTD---------TTPETIVDAIASAVDSFIQHI---AKVGHEIVAIGIGA 65 (318)
T ss_pred EEEeCCCEEEEEEECCC--CC--EEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhc---CCCccceEEEEEec
Confidence 58999999999998653 44 3443333221 124566777888888876533 33222333 3444
Q ss_pred hhhhhc--------C----ChHHHHHHHHHHhCCceEeeChHHHHHHHHh--hhhccCCCCCCceEEEEECCCceEEEEe
Q 010059 95 AAVRAA--------E----NKDEFVECVREKVGFEVDVLTGEQEAKFVYM--GVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (519)
Q Consensus 95 sA~R~A--------~----N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~--gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (519)
...=+. . +.-.+.+.+++++|++|-+.+.-.=+-+.-. |... ..++.+++.+|.|. -..++
T Consensus 66 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~----~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 66 PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGK----GARDVICITLGTGL-GGGII 140 (318)
T ss_pred cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccC----CCCcEEEEEeCCcc-EEEEE
Confidence 432221 1 2335788899999999999887766544322 2111 23568999999886 55666
Q ss_pred eCCeEee
Q 010059 161 KRGKVVF 167 (519)
Q Consensus 161 ~~~~~~~ 167 (519)
.+|++..
T Consensus 141 ~~G~~~~ 147 (318)
T TIGR00744 141 INGEIRH 147 (318)
T ss_pred ECCEEee
Confidence 7787765
No 118
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=78.54 E-value=12 Score=30.63 Aligned_cols=84 Identities=13% Similarity=0.269 Sum_probs=46.8
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+-.||+|...+++.+.+- +|.+ +...+.+.. .+ .+ +.++.+.++++++.+ ...+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~--~g~~--~~~~~~~~~--~~-----------~~---~~~~~l~~~i~~~~~---~~i~Ig~ 59 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE--TGKL--ADPLEVIPR--TN-----------KE---ADAARLKKLIKKYQP---DLIVIGL 59 (99)
T ss_pred EEEEccCCCeEEEEEECC--CCCE--ecCEEEEEe--cC-----------cc---hHHHHHHHHHHHhCC---CEEEEeC
Confidence 568999999999999853 4443 333333322 00 11 123333344445554 2566773
Q ss_pred hh-----hhhcCChHHHHHHHHHHhCCceEeeC
Q 010059 95 AA-----VRAAENKDEFVECVREKVGFEVDVLT 122 (519)
Q Consensus 95 sA-----~R~A~N~~~f~~~i~~~tG~~i~iIs 122 (519)
.. ....-+ ..|.+.+++++|+++.+.+
T Consensus 60 pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 60 PLNMNGTASRETE-EAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEe
Confidence 22 111123 6777888888898888765
No 119
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=78.48 E-value=5.1 Score=41.03 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=53.0
Q ss_pred HHcCCCCccEEEEEehhhhh--cCChHHHHHHH---HHHhCC-------------ceEeeChHHHHHHHHhhhhccCCCC
Q 010059 80 QSHNISRDHTRAVATAAVRA--AENKDEFVECV---REKVGF-------------EVDVLTGEQEAKFVYMGVLQFLPVF 141 (519)
Q Consensus 80 ~~~~v~~~~i~~vATsA~R~--A~N~~~f~~~i---~~~tG~-------------~i~iIsg~eEA~l~~~gv~~~~~~~ 141 (519)
..-|+.+.+|..+.|=-+.+ ..+.+...+.| +...-. +|+|+...-=|.+.++.- +. .
T Consensus 87 ~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~---~~-~ 162 (318)
T PF06406_consen 87 LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD---LD-E 162 (318)
T ss_dssp HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT---S--T
T ss_pred HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh---hc-c
Confidence 34477777787777744432 12222222223 222222 345555544455555443 22 1
Q ss_pred CCceEEEEECCCceEEEEeeCCeE--ee-eeeeehhHHHHHHhhc
Q 010059 142 DRLVLSVDIGGGSTEFVIGKRGKV--VF-CESVNLGHVSLSEKFG 183 (519)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~--~~-~~SlplG~vrl~e~f~ 183 (519)
.+..+|+||||+.|.+..+.++.. .. +.+.++|...+++...
T Consensus 163 ~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 163 DESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp TSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHH
T ss_pred cCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHH
Confidence 245899999999999999887532 22 2345799999888653
No 120
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=78.46 E-value=2.8 Score=45.53 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccC---cchHHHHHHHHHhhhhcc
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFE---DKDLEYLEAACLLHNIGH 413 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~---~~~~~lL~~Aa~LhdiG~ 413 (519)
.|+--|+.++..|...+.....-... +-...++ .....++++||++||||.
T Consensus 68 tHSleV~~i~r~i~~~i~~~l~~~~~--~~~~~~~~~~~~~~~lveaa~L~HDiGh 121 (503)
T PRK04926 68 THSLEVQQVGRYIAKEILSRLKEQKL--LEAYGLDELTGPFESIVEMACLMHDIGN 121 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc--cccccccccccchHHHHHHHHHHhcCCC
Confidence 78888888877776655321100000 0000011 123579999999999995
No 121
>PRK04123 ribulokinase; Provisional
Probab=78.19 E-value=10 Score=41.95 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=46.4
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeec-c-CCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCcc
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVIL-G-RDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDH 88 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrL-g-~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~ 88 (519)
++..||+||.|+|..+++.. +|...-....+.+... . ......| ...++. .+.+++++++- +++.++++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~---~~~~~~~~~~ 79 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCA-TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAV---LKEAGVDPAA 79 (548)
T ss_pred EEEEEecCCCceEEEEEECC-CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHH---HHHcCCChhh
Confidence 68899999999999999742 4543332222222110 0 0112223 233444 66666666664 3444665557
Q ss_pred EEEEEehhhhh
Q 010059 89 TRAVATAAVRA 99 (519)
Q Consensus 89 i~~vATsA~R~ 99 (519)
|.+++-++.+.
T Consensus 80 I~aIgis~~~~ 90 (548)
T PRK04123 80 VVGIGVDFTGS 90 (548)
T ss_pred EEEEEEecccc
Confidence 88898776543
No 122
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=77.88 E-value=9 Score=41.68 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=43.3
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i~ 90 (519)
++..||+|+.++|..+++. +|+ ++...+.+.+. .....| ...++. .+.++++++. ++++.++++.+|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~--~g~--~l~~~~~~~~~--~~~~~g~~e~d~~~~~~~i~~~i~~---~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK--DGN--IVAIHQKEFTQ--IFPKPGWVEHDPMEIWESVLSCIAE---ALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEECC--CCC--EEEEEeeeccc--cCCCCCcEeeCHHHHHHHHHHHHHH---HHHHcCCChhhee
Confidence 4678999999999999973 454 34444443332 112223 223433 3444444444 4455676656788
Q ss_pred EEEehhh
Q 010059 91 AVATAAV 97 (519)
Q Consensus 91 ~vATsA~ 97 (519)
+++-++.
T Consensus 73 aIgis~~ 79 (493)
T TIGR01311 73 AIGITNQ 79 (493)
T ss_pred EEEEecC
Confidence 8876555
No 123
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=77.79 E-value=1.7 Score=37.78 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEE
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTI 41 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i 41 (519)
+++|||||.++.+.|++....+..+++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 589999999999999987544444443
No 124
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=77.61 E-value=12 Score=40.80 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=43.7
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCc--c
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRD--H 88 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~--~ 88 (519)
.+..||+||.|+|..+++. +|+. +...+.+..+- ....| +.+++. .+.+++++++..+ +.+.++. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~--~G~~--v~~~~~~~~~~--~~~~g~~eqd~~~~~~~~~~~l~~~~~---~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE--KGNV--VSSHQIPHEQI--TPHPGWLEHDPEEILRNVYKCMNEAIK---KLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEEEeeccc--CCCCCeEeeCHHHHHHHHHHHHHHHHH---HcCCCCccCc
Confidence 6889999999999999974 4644 33333333221 11122 233433 3455555655543 3344333 6
Q ss_pred EEEEEehhhhh
Q 010059 89 TRAVATAAVRA 99 (519)
Q Consensus 89 i~~vATsA~R~ 99 (519)
|.+|+.++.+.
T Consensus 74 I~aIgis~q~~ 84 (504)
T PTZ00294 74 IKAIGITNQRE 84 (504)
T ss_pred eEEEEeecCcc
Confidence 88888766643
No 125
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=75.98 E-value=3 Score=44.45 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccc---------cC-------CCchhhhh
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF---------TS-------KKGYHKQS 424 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~---------I~-------~~~h~~Hs 424 (519)
.|+--|+.+|..+...+. + ...|+++||++||||.- ++ .-.|.-||
T Consensus 73 tHslev~~~~r~~~~~~~---------------~---~~~~~~~~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQs 134 (428)
T PRK03007 73 THSLEVAQIGRGIAAGLG---------------C---DPDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQT 134 (428)
T ss_pred HHHHHHHHHHHHHHHHhC---------------C---CHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHH
Confidence 899999999999987652 1 24689999999999952 21 34667788
Q ss_pred HHHHHcCCC--------CCCCCHHHHHHHHHHHHhc
Q 010059 425 CHIIMNGDH--------LYGYSTDEIKLIALLTRFH 452 (519)
Q Consensus 425 ~yiI~ns~~--------l~G~s~~E~~~iA~iaryh 452 (519)
+-|+..-+. -.|++-- ...++.++.|-
T Consensus 135 lRIlt~LE~~~~~~~~~~~GLNLT-~atL~gilKYp 169 (428)
T PRK03007 135 LRILTRLEPKVLDPDGRSAGLNLT-RASLDAACKYP 169 (428)
T ss_pred HHHHHHhccccccccccccCcccC-HHHHhheecCC
Confidence 888866541 1255433 34555566663
No 126
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=75.77 E-value=3.5 Score=38.63 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCc---------------------
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG--------------------- 419 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~--------------------- 419 (519)
+|...|+++|.+| .+.+++ ++ .-...|++|||++++.....
T Consensus 20 ~H~l~V~~~A~~L----A~~y~~-----------d~---~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~~~~~~l 81 (187)
T COG1713 20 EHCLGVAETAIEL----AEAYGL-----------DP---EKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLERESPLL 81 (187)
T ss_pred HHHHHHHHHHHHH----HHHhCC-----------CH---HHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhhccChHH
Confidence 7999999999855 455542 22 22888999999988765322
Q ss_pred -hhhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCC
Q 010059 420 -YHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKF 456 (519)
Q Consensus 420 -h~~Hs~yiI~ns~~l~G~s~~E~~~iA~iaryh~k~~ 456 (519)
|..-++|++.+- +|+..+|.. ..++||--..
T Consensus 82 lH~~vgay~~~~~---fGi~De~VL---~AI~~HTtg~ 113 (187)
T COG1713 82 LHGKVGAYLLKEE---FGIKDEEVL---SAIEYHTTGR 113 (187)
T ss_pred HHHHHHHHHHHHH---hCCCcHHHH---HHHHHhccCC
Confidence 445566777654 788877643 2456776443
No 127
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=75.75 E-value=93 Score=31.30 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=74.3
Q ss_pred EEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEeh
Q 010059 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (519)
Q Consensus 16 AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (519)
-.||+||.++++++.+. +++..-.. .+ + ..++..++-|+.... .++. ...+.+|-
T Consensus 3 iGiDiGgT~~Kiv~~~~--~~~~~f~~---~~---------~-----~~~~~~~~~l~~~~~---~~~~---~~~i~~TG 57 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEP--KGRRKFKT---FE---------T-----TNIDKFIEWLKNQIH---RHSR---ITTLCATG 57 (279)
T ss_pred EEEEeCcceEEEEEEcC--CCcEEEEE---ee---------c-----ccHHHHHHHHHHHHH---hhcC---ceEEEEEC
Confidence 47999999999998742 34432111 11 1 123344444443332 2222 23445553
Q ss_pred hhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCC----CCCceEEEEECCCceEEEEeeCCeEeeeeee
Q 010059 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV----FDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (519)
Q Consensus 96 A~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~----~~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl 171 (519)
..+..|.+.++...|++++ -.+|-.-...|+..-++. +-.+.+++.||.| |-+..+++.+..+.---
T Consensus 58 -----gGa~k~~~~~~~~~~v~~~---k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 58 -----GGAFKFAELIYESAGIQLH---KFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVDGDNYERVGGT 128 (279)
T ss_pred -----CcHHHHHHHhccccCCccc---chhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEcCccEEEEcCc
Confidence 2444566777766665542 334555555566543331 2246799999887 88888876666665556
Q ss_pred ehhHHHHHHh
Q 010059 172 NLGHVSLSEK 181 (519)
Q Consensus 172 plG~vrl~e~ 181 (519)
.+|--++...
T Consensus 129 ~iGGGTf~GL 138 (279)
T TIGR00555 129 SLGGGTFLGL 138 (279)
T ss_pred cccHHHHHHH
Confidence 7777666643
No 128
>PRK10331 L-fuculokinase; Provisional
Probab=74.72 E-value=17 Score=39.36 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=42.0
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i 89 (519)
+++.+||+||.|+|..+++. +|+. +...+.+...-......| +..++. .+.+++++++..+ +. ...+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~--~G~~--~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~---~~--~~~~I 72 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR--QGKI--VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINS---EL--TECHI 72 (470)
T ss_pred ceEEEEecCCCceEEEEEcC--CCcE--EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHH---hC--Cccce
Confidence 36789999999999999974 4654 444444322211111122 334444 4444555555433 22 22358
Q ss_pred EEEEehhhh
Q 010059 90 RAVATAAVR 98 (519)
Q Consensus 90 ~~vATsA~R 98 (519)
.+++-++.+
T Consensus 73 ~~I~is~~~ 81 (470)
T PRK10331 73 RGITVTTFG 81 (470)
T ss_pred EEEEEeccc
Confidence 888765543
No 129
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=74.31 E-value=4.1 Score=42.79 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcc
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~ 413 (519)
+|+.=|..+|-.+-+.|..--+.. +.+++.+..-.++|++|||||.
T Consensus 76 eHsLG~~~lA~~~v~~L~~~q~~E-------l~It~~d~~~vqvA~LLHDIGH 121 (498)
T KOG2681|consen 76 EHSLGTYTLAGILVNALNKNQCPE-------LCITEVDLQAVQVAALLHDIGH 121 (498)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCC-------CCCCHHHHHHHHHHHHHhhcCC
Confidence 577777788888888777542210 1367888899999999999994
No 130
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=26 Score=36.79 Aligned_cols=96 Identities=19% Similarity=0.309 Sum_probs=59.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHh-------CCc-eEeeChHHH
Q 010059 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKV-------GFE-VDVLTGEQE 126 (519)
Q Consensus 56 ~~g~ls~e~i~~~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~t-------G~~-i~iIsg~eE 126 (519)
.+..+++|-|.. -+|..+++.+++| |-+. -.+|-|- ..+|-+.-++.| |++ ++||+..--
T Consensus 143 ~~K~FtPeEiSa--MiL~KMKe~AEayLGkkv--~~AVvTv-------PAYFNDAQrQATKDAGtIAgLnV~RIiNePTa 211 (663)
T KOG0100|consen 143 ETKVFTPEEISA--MILTKMKETAEAYLGKKV--THAVVTV-------PAYFNDAQRQATKDAGTIAGLNVVRIINEPTA 211 (663)
T ss_pred cccccCHHHHHH--HHHHHHHHHHHHHhCCcc--cceEEec-------chhcchHHHhhhcccceeccceEEEeecCccH
Confidence 456788888764 5688999999998 3221 2334442 123444434443 676 577777766
Q ss_pred HHHHHhhhhccCCCCCCceEEEEECCCceEEEEe--eCCeE
Q 010059 127 AKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG--KRGKV 165 (519)
Q Consensus 127 A~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~--~~~~~ 165 (519)
|.+.| |.-. ...+++.+|+|+|||...+++. ++|-+
T Consensus 212 AAIAY-GLDK--k~gEknilVfDLGGGTFDVSlLtIdnGVF 249 (663)
T KOG0100|consen 212 AAIAY-GLDK--KDGEKNILVFDLGGGTFDVSLLTIDNGVF 249 (663)
T ss_pred HHHHh-cccc--cCCcceEEEEEcCCceEEEEEEEEcCceE
Confidence 65544 4322 1245679999999999998864 55543
No 131
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=72.26 E-value=60 Score=28.92 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=62.7
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
+++.|+|=+|..++.+...+ +|.+.+.+-....+.|..+-. .+.+. +--..|++++++|+|+ +|..-
T Consensus 2 ~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~~~------~~~vr---~Fq~~f~kl~~dy~Vd--~VvIk- 68 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDDNS------TEEVR---KFQFTFAKLMEDYKVD--KVVIK- 68 (138)
T ss_pred eEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCCcc------HHHHH---HHHHHHHHHHHHcCCC--EEEEE-
Confidence 47899999999999999876 677887776666667776632 33333 4445678899999996 34211
Q ss_pred ehhh--hhcCChHHH-HHHHHHHh-CCceEeeChHH
Q 010059 94 TAAV--RAAENKDEF-VECVREKV-GFEVDVLTGEQ 125 (519)
Q Consensus 94 TsA~--R~A~N~~~f-~~~i~~~t-G~~i~iIsg~e 125 (519)
--+- .-|-.+--| ++.+-+.. +++|+++|+..
T Consensus 69 ~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~ 104 (138)
T PF11215_consen 69 ERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPAT 104 (138)
T ss_pred ecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHH
Confidence 1000 002222223 34433333 89999999865
No 132
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=68.78 E-value=6.3 Score=39.83 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=26.8
Q ss_pred CceE-eeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeee
Q 010059 116 FEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (519)
Q Consensus 116 ~~i~-iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~Slp 172 (519)
.+++ +.||.- | +..|+...+. ..++.+++||||-||.++...+|++.....-.
T Consensus 53 ~Pv~ti~SGPa-a--s~~ga~~~~~-g~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~ 106 (290)
T PF01968_consen 53 RPVETILSGPA-A--SVIGAAARLT-GLENAIVVDMGGTTTDIALIKDGRPEISSEGA 106 (290)
T ss_dssp SGGCTB--SSH-H--HHHHHHH--H-T-SSEEEEEE-SS-EEEEEEETTEE-------
T ss_pred hHHHHhhcCHH-H--hHhhhhhhcC-CCCCEEEEeCCCCEEEEEEEECCeeecccccc
Confidence 3444 456654 2 2334333111 23569999999999999999999986544333
No 133
>PRK09698 D-allose kinase; Provisional
Probab=68.64 E-value=1.3e+02 Score=30.04 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=79.0
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~v 92 (519)
..+..||||...+++.+++.+ |. ++.+.+.++. ...+++.++.+.+.+++|.+... ..+ .-.+|
T Consensus 4 ~~~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~-~~i---~gigi 67 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAE--GE--ILHCEKKRTA--------EVIAPDLVSGLGEMIDEYLRRFN-ARC---HGIVM 67 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCC--CC--EEEEEEeCCc--------cccchHHHHHHHHHHHHHHHHcC-CCe---eEEEE
Confidence 457889999999999998763 54 3444433321 11234457777777777765321 111 12344
Q ss_pred Eehhhh--------hcCC-------hHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEE
Q 010059 93 ATAAVR--------AAEN-------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (519)
Q Consensus 93 ATsA~R--------~A~N-------~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl 157 (519)
|+...= ...| .-.+.+.+++++|++|.+.+.-.=+-+.-.- .... ...+.+.+.+|.| +--
T Consensus 68 a~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~~-~~~~--~~~~~~~v~lgtG-IG~ 143 (302)
T PRK09698 68 GFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDVK-ENNL--TQQLVLGAYLGTG-MGF 143 (302)
T ss_pred eCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHHH-hcCC--CCceEEEEEecCc-eEE
Confidence 444321 1222 2347788888999999998876544332211 1111 2245788888876 444
Q ss_pred EEeeCCeEeee
Q 010059 158 VIGKRGKVVFC 168 (519)
Q Consensus 158 ~~~~~~~~~~~ 168 (519)
.+..+|++...
T Consensus 144 giv~~G~~~~G 154 (302)
T PRK09698 144 AVWMNGAPWTG 154 (302)
T ss_pred EEEECCEEeeC
Confidence 56667777644
No 134
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=67.54 E-value=47 Score=33.60 Aligned_cols=135 Identities=20% Similarity=0.201 Sum_probs=73.9
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCc---CCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSS---SCSIS-TQSQARSVESLLMFRDIIQSHNISRDH 88 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~---~g~ls-~e~i~~~~~~L~~f~~~~~~~~v~~~~ 88 (519)
.++-.||-|+.++|.+|++. ++++ +|++... ..... ++++..+.+++..+.. +-|.++++
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~--~g~v-----------lg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~---~aG~~~~~ 68 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADE--DGNV-----------LGRGKSGPANIQLVGKEEAVRNIKDAIREALD---EAGLKPDE 68 (301)
T ss_pred cEEEEEccCCcceEEEEEcC--CCcE-----------EEEeccCCceecccchHHHHHHHHHHHHHHHH---hcCCCHHH
Confidence 46889999999999999973 3443 2333221 12334 6777777777776653 23444322
Q ss_pred --EEEEEehhhhhcCChHHHHHHHHHHh--CCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeCCe
Q 010059 89 --TRAVATAAVRAAENKDEFVECVREKV--GFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGK 164 (519)
Q Consensus 89 --i~~vATsA~R~A~N~~~f~~~i~~~t--G~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~ 164 (519)
..+++.+..= .|.++-........ ..++.|-+. ++..+.|.. .++.++++=.|.||.-+.. ++++
T Consensus 69 i~~~~agla~ag--~~~~~~~~~~~~~l~~a~~v~v~~D---g~iAl~ga~-----~~~~Gii~i~GTGSi~~~~-~gg~ 137 (301)
T COG2971 69 IAAIVAGLALAG--ANVEEAREELERLLPFAGKVDVEND---GLIALRGAL-----GDDDGIIVIAGTGSIGYGR-KGGR 137 (301)
T ss_pred hCceeeeeeccC--cchhHHHHHHHHhcCccceEEEecC---hHHHHhhcc-----CCCCCEEEEecCCeEEEEE-eCCe
Confidence 2233333221 13333333332222 224555554 444444433 1345899999999999987 6665
Q ss_pred Eee--eeeeehh
Q 010059 165 VVF--CESVNLG 174 (519)
Q Consensus 165 ~~~--~~SlplG 174 (519)
... .+.+++|
T Consensus 138 ~~r~GG~Gf~Ig 149 (301)
T COG2971 138 RERVGGWGFPIG 149 (301)
T ss_pred eEEecCcCcccc
Confidence 442 3445544
No 135
>PRK13317 pantothenate kinase; Provisional
Probab=67.41 E-value=1.3e+02 Score=30.07 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=40.7
Q ss_pred hCCceEeeChHHHHHHHHhhhhccC---CCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHH
Q 010059 114 VGFEVDVLTGEQEAKFVYMGVLQFL---PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (519)
Q Consensus 114 tG~~i~iIsg~eEA~l~~~gv~~~~---~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (519)
.|+++.= .+|-.-...|+..-+ ..+..+.+++++|+|-. ++.+.+++....-.-.+|--.+..
T Consensus 67 ~~~~~~~---v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt~iGGgt~~g 132 (277)
T PRK13317 67 YGYPIAE---FVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGTGIGGGTIQG 132 (277)
T ss_pred cCCCeee---eHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccccccHHHHHH
Confidence 5655422 466666666666544 11234578888888855 888888877777777777755544
No 136
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=66.46 E-value=6.5 Score=38.01 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.3
Q ss_pred chHHHHHHHHHhhhhcccc
Q 010059 397 KDLEYLEAACLLHNIGHFT 415 (519)
Q Consensus 397 ~~~~lL~~Aa~LhdiG~~I 415 (519)
.++.++-+||+|||+|+-+
T Consensus 103 ~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 103 AWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 4567999999999999973
No 137
>PLN02295 glycerol kinase
Probab=66.17 E-value=23 Score=38.79 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=41.9
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCCcc---
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDH--- 88 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~i-~~~~~~L~~f~~~~~~~~v~~~~--- 88 (519)
+..||+||.|+|..+++. +|+. +.....+..+- ....| +..++.+ +.+++++++ ++++.++++.+
T Consensus 2 vlgID~GTts~Ka~l~d~--~G~~--~~~~~~~~~~~--~~~~G~~Eqdp~~~w~~~~~~i~~---~~~~~~~~~~~i~~ 72 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR--DARP--VASHQVEFTQI--YPQAGWVEHDPMEILESVLTCIAK---ALEKAAAKGHNVDS 72 (512)
T ss_pred EEEEecCCCceEEEEECC--CCCE--EEEEeeccccc--CCCCCcEeeCHHHHHHHHHHHHHH---HHHHcCCCcccccc
Confidence 568999999999999974 4654 33333332211 11123 3345443 344455544 44555665544
Q ss_pred -EEEEEehhhh
Q 010059 89 -TRAVATAAVR 98 (519)
Q Consensus 89 -i~~vATsA~R 98 (519)
|.+|+-++.+
T Consensus 73 ~i~aIg~s~q~ 83 (512)
T PLN02295 73 GLKAIGITNQR 83 (512)
T ss_pred ceEEEEEecCc
Confidence 6888755543
No 138
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=64.98 E-value=28 Score=38.43 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=41.3
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQS-QARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
+..||+|+.|+|..+++. +|++ +.....+..+-..-..-....++. .+.++++++ +++++.+++..+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~i--~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~---~~~~~~~~~~~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS--TGDI--LALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVK---QVLAESKVDPNSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcC--CCCE--EEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHH---HHHHHcCCChhheEEEE
Confidence 568999999999999974 4553 433333332211100011234443 344444454 44555666655688888
Q ss_pred ehh
Q 010059 94 TAA 96 (519)
Q Consensus 94 TsA 96 (519)
-++
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 544
No 139
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=63.73 E-value=8.1 Score=40.82 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccc
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~ 414 (519)
.|+--|+.+|..|--+|.-- . . .....|++.||+.||||.-
T Consensus 71 THSLEVAQIgRsia~~l~~~-~-----------~-~~~~dL~E~a~LaHDiGhP 111 (412)
T COG0232 71 THSLEVAQIGRSIARELGLD-L-----------D-LPFEDLVETACLAHDIGHP 111 (412)
T ss_pred hhhHHHHHHHHHHHHHhccc-c-----------C-CChHHHHHHHHHHhcCCCC
Confidence 89999999998886655421 0 1 1235899999999999964
No 140
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=61.84 E-value=25 Score=37.87 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=41.6
Q ss_pred EEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCH-HHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~-e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
.||||++++|..+++. +|+ ++.....+..... ...| ..++ +-++.++++++++ +++++.++.+|.+++
T Consensus 2 gIDiGtt~ik~~l~d~--~g~--i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~l~~~i~~~---~~~~~~~~~~I~gIg 72 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE--QGE--VIASGSAPHTVIS--PHPGWSEQDPEDWWDATEEAIKEL---LEQASEMGQDIKGIG 72 (481)
T ss_pred ceeecCcceEEEEECC--CCC--EEEEEeecccccC--CCCCCeeeCHHHHHHHHHHHHHHH---HHhcCCCcccEEEEE
Confidence 5999999999999974 454 3443444433211 1122 2333 3345555555544 456676656788888
Q ss_pred ehhh
Q 010059 94 TAAV 97 (519)
Q Consensus 94 TsA~ 97 (519)
-++.
T Consensus 73 vs~~ 76 (481)
T TIGR01312 73 ISGQ 76 (481)
T ss_pred EecC
Confidence 7643
No 141
>PRK13324 pantothenate kinase; Reviewed
Probab=61.58 E-value=1.7e+02 Score=29.06 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=66.4
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccC-CCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~-~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
+-+||||=.++++-+++- ++ .+... |+.. +.. ..++| ....++.++..+++...++..+.
T Consensus 2 iL~iDiGNT~ik~gl~~~---~~--~~~~~----r~~t~~~~---~t~de-------~~~~l~~~~~~~~~~~~~i~~vi 62 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG---DR--IVSQI----RYATSSVD---STSDQ-------MGVFLRQALRENSVDLGKIDGCG 62 (258)
T ss_pred EEEEEeCCCceEEEEEEC---CE--EEEEE----EEecCccc---cchHH-------HHHHHHHHHHhcCCCccCCCeEE
Confidence 457899999999999972 22 23322 2221 111 11222 12223344444454432344444
Q ss_pred ehhhhhcCChHHHHHHHHHHhCCceEeeChHHHH---------------HHHHhhhhccCCCCCCceEEEEECCCceEEE
Q 010059 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA---------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (519)
Q Consensus 94 TsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA---------------~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~ 158 (519)
-|.+. .+=...+.+.+++..|.++.+++.+... -....|+.+.. +..+.+|+|.|..-|==.
T Consensus 63 isSVv-P~l~~~l~~~~~~~~~~~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~--~~~~~iViD~GTA~T~d~ 139 (258)
T PRK13324 63 ISSVV-PHLNYSLGSAVIKYFNIKPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADH--PNKDLLIIDLGTATTFDL 139 (258)
T ss_pred EEeCc-chhHHHHHHHHHHHhCCCeEEEecCCccceeecCChhhccHHHHHHHHHHHHhc--CCCCEEEEEcCCceEEEE
Confidence 44444 2223344466677788888777533311 01112222212 234689999999988655
Q ss_pred EeeCCeEe
Q 010059 159 IGKRGKVV 166 (519)
Q Consensus 159 ~~~~~~~~ 166 (519)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (258)
T PRK13324 140 VTKDKKYL 147 (258)
T ss_pred EcCCCeEE
Confidence 55555544
No 142
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=58.10 E-value=1.3e+02 Score=29.40 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=73.6
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+..||||.+.+|+.+++.+ +. ++.+.+.++. . .-.++-++.+.+.++.+.... +.. .-.+||+
T Consensus 2 ~lgidiggt~i~~~l~d~~--g~--i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~~~---~~~--~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN--LQ--RIWHKRVPTP--R------EDYPQLLQILRDLTEEADTYC---GVQ--GSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC--CC--EEEEEEecCC--C------cCHHHHHHHHHHHHHHHHhhc---CCC--ceEEEEe
Confidence 6899999999999999753 43 4555444421 0 113455566656666554321 110 1123333
Q ss_pred hhh--------hhc----CChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEeeC
Q 010059 95 AAV--------RAA----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (519)
Q Consensus 95 sA~--------R~A----~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~ 162 (519)
..+ +.+ -+.-.+.+.+++++|++|.+-+.-.=+-+.-.-.-... ..++.+.+-+|.| +-..++-+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~--~~~~~v~i~lgtG-iG~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFR--TYPTVLGLILGTG-VGGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCC--CCCcEEEEEECcC-eEEEEEEC
Confidence 221 111 12346788888999999999887766655433111111 1245777777754 34445566
Q ss_pred CeEee
Q 010059 163 GKVVF 167 (519)
Q Consensus 163 ~~~~~ 167 (519)
|++..
T Consensus 142 G~l~~ 146 (256)
T PRK13311 142 GSIVS 146 (256)
T ss_pred CEEec
Confidence 66654
No 143
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=57.23 E-value=47 Score=36.26 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=39.3
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEE
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g--~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i~~ 91 (519)
+..||+|+.++|..+++. +|.+ +...+.+...- ....| ..+++. .+.+++++++. ++..+.+ .+|.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~--~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~~~---~~~~~~~-~~I~~ 71 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE--NGKI--VAKSSIGYPLY--TPASGMAEENPEEIFEAVLVTIREV---SINLEDE-DEILF 71 (505)
T ss_pred EEEEeccccceEEEEEcC--CCCE--EEEEEeecccc--cCCCCCeeeCHHHHHHHHHHHHHHH---HHhCCCc-CceEE
Confidence 578999999999999963 4554 33333322211 11112 233333 34444444444 4444443 45888
Q ss_pred EEehhh
Q 010059 92 VATAAV 97 (519)
Q Consensus 92 vATsA~ 97 (519)
++-++.
T Consensus 72 Igis~~ 77 (505)
T TIGR01314 72 VSFSTQ 77 (505)
T ss_pred EEEecc
Confidence 876554
No 144
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=56.82 E-value=18 Score=38.59 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHH----HhhhhccCCCCCCce
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (519)
++++..+.++.+|.+ ++.+|....+.+..-.+.+.+.++ +-|+++.+.++-+ |..+. ........ +.-
T Consensus 10 ~~~~l~~~l~~~g~~--~vlivt~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~----~~D 82 (414)
T cd08190 10 VTAEVGMDLKNLGAR--RVCLVTDPNLAQLPPVKVVLDSLE-AAGINFEVYDDVRVEPTDESFKDAIAFAKKG----QFD 82 (414)
T ss_pred HHHHHHHHHHHcCCC--eEEEEECcchhhcchHHHHHHHHH-HcCCcEEEeCCCCCCcCHHHHHHHHHHHHhc----CCC
Confidence 455555566677764 577777666765444466666654 3589999887633 22221 11111111 123
Q ss_pred EEEEECCCce
Q 010059 146 LSVDIGGGST 155 (519)
Q Consensus 146 lv~DIGGGSt 155 (519)
+|+-|||||.
T Consensus 83 ~IIaiGGGSv 92 (414)
T cd08190 83 AFVAVGGGSV 92 (414)
T ss_pred EEEEeCCccH
Confidence 8999999996
No 145
>PRK15027 xylulokinase; Provisional
Probab=54.82 E-value=47 Score=36.02 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=39.1
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQS-QARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~-i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
+-.||+||.|+|..+++. +|++ +...+.+..+...-...-+.+++. .+.+++++++. +++.. ..+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~v--va~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l---~~~~~--~~~I~aI~ 72 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE--QGEV--VASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL---GDQHS--LQDVKALG 72 (484)
T ss_pred EEEEEecccceEEEEEcC--CCCE--EEEEeecccccCCCCCccccCHHHHHHHHHHHHHHH---HHhCC--ccceeEEE
Confidence 568999999999999973 4654 333333322211101011233433 33333444443 44333 24688888
Q ss_pred ehhhh
Q 010059 94 TAAVR 98 (519)
Q Consensus 94 TsA~R 98 (519)
-++.+
T Consensus 73 is~q~ 77 (484)
T PRK15027 73 IAGQM 77 (484)
T ss_pred EecCC
Confidence 66544
No 146
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=54.40 E-value=44 Score=36.46 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=50.1
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-CSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~-g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~v 92 (519)
.+-.||+||.|.|-.|++.. +|. .|....++++....-... -.=|.+-++..|.+++.-.+ +-||++.+|..+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~-~G~--~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~---~agv~~~~V~gI 77 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQ-TGT--LLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVA---KAGVDPADVVGI 77 (544)
T ss_pred EEEEEeecCCceeEEEEEcC-CCc--chhhcccceeccccCccccccCHHHHHHHHHHHHHHHHH---HcCCChhHeeEE
Confidence 57789999999999999875 343 455555555544321111 12356778888888877554 558988788877
Q ss_pred E
Q 010059 93 A 93 (519)
Q Consensus 93 A 93 (519)
+
T Consensus 78 G 78 (544)
T COG1069 78 G 78 (544)
T ss_pred E
Confidence 5
No 147
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=54.39 E-value=53 Score=28.53 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHH
Q 010059 75 FRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (519)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~ 130 (519)
+.+.++++++.+..|.++||-.++ ..+.-+.++-++.|++++..+.+|=....
T Consensus 21 i~~~l~~~~~~~~~i~~iasi~~K---~~E~~l~~~A~~l~~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 21 IEQALAEAGLSPRSIAAIASIDIK---ADEPGLLELAEELGIPLRFFSAEELNAVE 73 (121)
T ss_dssp HHHHHHHCT--GGGEEEEEESSSS---S--HHHHHHHHHCTSEEEEE-HHHHHCHH
T ss_pred HHHHHHHcCCChhhccEEEecccc---CCCHHHHHHHHHhCCCeEEECHHHHhcCC
Confidence 344556688888899999998654 44456666677899999999999877554
No 148
>PRK09557 fructokinase; Reviewed
Probab=52.63 E-value=1.4e+02 Score=29.91 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=71.4
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+-.||||.+.+++.+++.+ |. ++.+.+.++. . .-.++.++.+.+.++++.. .++. ..-.++|+
T Consensus 2 ~lgidig~t~~~~~l~d~~--g~--i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~---~~~~--~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDA--GE--ELFRKRLPTP--R------DDYQQTIEAIATLVDMAEQ---ATGQ--RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCC--CC--EEEEEEecCC--C------CCHHHHHHHHHHHHHHHHh---hcCC--ceEEEecC
Confidence 5689999999999998753 43 3444333321 0 1123444444444444432 2221 11234444
Q ss_pred hhhhh--------cC----ChHHHHHHHHHHhCCceEeeChHHHHHHHH--hhhhccCCCCCCceEEEEECCCceEEEEe
Q 010059 95 AAVRA--------AE----NKDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (519)
Q Consensus 95 sA~R~--------A~----N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~--~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (519)
...=+ +. |.-.+.+.+++++|++|.+.+.-.=+-+.- .|... ..++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~~----~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAA----GKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhcccC----CCCcEEEEEEccc-eEEEEE
Confidence 33221 11 334567788889999999887655433332 12211 1245778888744 344456
Q ss_pred eCCeEeeee
Q 010059 161 KRGKVVFCE 169 (519)
Q Consensus 161 ~~~~~~~~~ 169 (519)
-+|++....
T Consensus 140 ~~G~l~~G~ 148 (301)
T PRK09557 140 INGRVHIGG 148 (301)
T ss_pred ECCEEEecC
Confidence 677776543
No 149
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=52.22 E-value=21 Score=37.28 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChH-HHHHHHH--hhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVY--MGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~-eEA~l~~--~gv~~~~~~~~~~~lv 147 (519)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +-|+++.+.++- .+..+.- .++.. .... +.-+|
T Consensus 11 ~~~~l~~~l~~~g~~--~~liv~~~~~~~~~~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~-~~~~-~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIK--RPLIVTDPGLAALGLVARVLALLE-DAGLAAALFDEVPPNPTEAAVEAGLAA-YRAG-GCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHH-HHhc-CCCEE
Confidence 344555556667763 566676666655444556666554 358898888753 2322221 11111 1111 12389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 86 IaiGGGSv 93 (370)
T cd08192 86 IAFGGGSA 93 (370)
T ss_pred EEeCCchH
Confidence 99999996
No 150
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=51.81 E-value=65 Score=33.89 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-----HHHHHHhhhhccCCCCCCce
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-----EA~l~~~gv~~~~~~~~~~~ 145 (519)
++.+..+.++.+|.. ++.+|....++...-.+.+.+.++ +.|+.+.+.+|.+ |.-.......... +.-
T Consensus 18 ~~~~l~~~~~~~g~~--~~livt~~~~~~~g~~~~v~~~L~-~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~----~~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFT--RTLIVTDNMLTKLGMAGDVQKALE-ERNIFSVIYDGTQPNPTTENVAAGLKLLKEN----NCD 90 (383)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc----CCC
Confidence 455566667778874 577776666666544555666554 4689888888742 2111111112211 112
Q ss_pred EEEEECCCce
Q 010059 146 LSVDIGGGST 155 (519)
Q Consensus 146 lv~DIGGGSt 155 (519)
.|+=|||||+
T Consensus 91 ~IiaiGGGS~ 100 (383)
T PRK09860 91 SVISLGGGSP 100 (383)
T ss_pred EEEEeCCchH
Confidence 8999999996
No 151
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=50.93 E-value=2.7e+02 Score=27.84 Aligned_cols=132 Identities=12% Similarity=0.070 Sum_probs=73.2
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+..||||.+.+++.+++.+ |. ++.+.+.++. . .-.++.++.+.+.++++.. +++.. .-.+||.
T Consensus 2 ~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~---~~~~~--~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK--LE--LQWEERVPTP--R------DSYDAFLDAVCELVAEADQ---RFGCK--GSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC--Cc--EEEEEEecCC--C------cCHHHHHHHHHHHHHHHHh---hcCCc--ceEEEeC
Confidence 5789999999999998753 43 4444433321 1 1134555555566665542 22221 1133443
Q ss_pred hhhhh-------cCC-----hHHHHHHHHHHhCCceEeeChHHHHHHHH--hhhhccCCCCCCceEEEEECCCceEEEEe
Q 010059 95 AAVRA-------AEN-----KDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (519)
Q Consensus 95 sA~R~-------A~N-----~~~f~~~i~~~tG~~i~iIsg~eEA~l~~--~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (519)
...=+ +.| .-.+.+.+++++|++|.+-+.-.=+-+.- .|... ..++.+.+.+|.| +--.++
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~----~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFT----QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcccc----CCCcEEEEEecCc-eEEEEE
Confidence 22111 112 23577889999999999888765443331 22211 1245788888865 344556
Q ss_pred eCCeEeee
Q 010059 161 KRGKVVFC 168 (519)
Q Consensus 161 ~~~~~~~~ 168 (519)
-+|++...
T Consensus 140 ~~G~l~~G 147 (303)
T PRK13310 140 FNGKPISG 147 (303)
T ss_pred ECCEEeeC
Confidence 67776644
No 152
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=49.22 E-value=35 Score=35.91 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HH-HH-HHhhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EA-KF-VYMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA-~l-~~~gv~~~~~~~~~~~lv 147 (519)
++++..+.++.+| + ++.+|....+.+..-.+.+.+.++ +.|+++.+.+|.+ +. .. ...++..... . +.-.|
T Consensus 10 ~l~~l~~~~~~~g-~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~-~~D~I 83 (386)
T cd08191 10 QRRQLPRLAARLG-S--RALIVTDERMAGTPVFAELVQALA-AAGVEVEVFDGVLPDLPRSELCDAASAAAR-A-GPDVI 83 (386)
T ss_pred HHHHHHHHHHHcC-C--eEEEEECcchhhcchHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 3455555666677 3 567777666665444444544443 4589999998775 11 11 1122221111 1 22389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 84 IaiGGGS~ 91 (386)
T cd08191 84 IGLGGGSC 91 (386)
T ss_pred EEeCCchH
Confidence 99999996
No 153
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=48.99 E-value=28 Score=37.55 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCceE-EEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcC-----------CCCCHHHHHHHHHHHHHHHHH
Q 010059 11 PQTLF-ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-----------CSISTQSQARSVESLLMFRDI 78 (519)
Q Consensus 11 ~~~~~-AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~-----------g~ls~e~i~~~~~~L~~f~~~ 78 (519)
.+..| -++|+||.++|+.+.+++.+.-.+.....+-+++.|+.+..- ..|+-+.++. .++.|-..
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~---i~~~id~~ 237 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEA---INQLIDKL 237 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHH---HHHHHhhh
Confidence 34445 479999999999999998544456778888889999887531 1233333332 23446667
Q ss_pred HHHcCCCCccE---EEEEehhhhhc---CChH-----HHHHHHHHH-------hCCce----EeeChHHHHH---HHHhh
Q 010059 79 IQSHNISRDHT---RAVATAAVRAA---ENKD-----EFVECVREK-------VGFEV----DVLTGEQEAK---FVYMG 133 (519)
Q Consensus 79 ~~~~~v~~~~i---~~vATsA~R~A---~N~~-----~f~~~i~~~-------tG~~i----~iIsg~eEA~---l~~~g 133 (519)
|.+++|....| .+++.+-+--| .|.+ +|..+..+- .|+++ ++..-.-=|. -..+|
T Consensus 238 ~~e~~V~~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r~v~~~a~~iGl~~n~n~el~vlP~Ia~~VGADAla 317 (614)
T COG3894 238 CEEGEVCGNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSRVVPASASEIGLEVNRNCELFVLPAIAHEVGADALA 317 (614)
T ss_pred chhccccccchhheeccCchHHHHHhcCCCHHHhcCCccccccccceecchhhcchhhcCCCEEEecchhccccchHHHH
Confidence 77777654333 22332222111 1111 122222110 11111 1111000000 11122
Q ss_pred hh--ccCCCCCCceEEEEECCCceEEEEeeCCeEeeeeeeehhHH
Q 010059 134 VL--QFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (519)
Q Consensus 134 v~--~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~SlplG~v 176 (519)
+. ..+-..++-.+++|+|. +.|++++.++++. ..|-|-|+.
T Consensus 318 ~il~tg~~~sdevslvtD~GT-NaEivlg~~~ri~-t~SaaaGPA 360 (614)
T COG3894 318 MILSTGIHDSDEVSLVTDYGT-NAEIVLGNRDRIV-TASAAAGPA 360 (614)
T ss_pred HHHhccCccccceEEEEeecc-cceEEeccCCEEE-EecCCCCcc
Confidence 22 11222345689999986 6899998888765 557888874
No 154
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=47.64 E-value=1.6e+02 Score=26.08 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=57.2
Q ss_pred eEEEEEecccceeeeEEEEeCCCCE-EEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~v 92 (519)
.+-+||.|+-.+=+.+.+- .+.+ .++..... .+ . . ..++.+.+++++++++ ..+|
T Consensus 5 ~iLalD~G~kriGvAv~d~--~~~~a~pl~~i~~-----~~----~--~--------~~~~~l~~~i~~~~i~---~iVv 60 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP--LGGTAQPLETIKR-----NN----G--T--------PDWDRLEKLIKEWQPD---GLVV 60 (138)
T ss_pred cEEEEEeCCCEEEEEEecC--CCCEEcCEEEEEc-----CC----C--c--------hHHHHHHHHHHHhCCC---EEEE
Confidence 4889999999888887753 2322 12211100 00 0 0 2256677788888884 5678
Q ss_pred Ee------hhhhhcCChHHHHHHHHHHhCCceEeeCh---HHHHHHHH
Q 010059 93 AT------AAVRAAENKDEFVECVREKVGFEVDVLTG---EQEAKFVY 131 (519)
Q Consensus 93 AT------sA~R~A~N~~~f~~~i~~~tG~~i~iIsg---~eEA~l~~ 131 (519)
|- +.-..|.-...|.++++++++++|...+. ..||.-.+
T Consensus 61 GlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l 108 (138)
T PRK00109 61 GLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERAL 108 (138)
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHH
Confidence 71 11123334458999999999999998875 34555444
No 155
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=47.40 E-value=70 Score=27.99 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHH
Q 010059 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129 (519)
Q Consensus 60 ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l 129 (519)
.+.+.+..+ +.+.++++++.+..+.++||-.++. |-..+++ +-++.|++++..|.+|=...
T Consensus 14 ~~~e~i~~a------i~~~L~~~~l~~~si~~lasi~~K~--~E~~L~~-~A~~lg~pl~~~~~~eL~~~ 74 (126)
T PRK07027 14 VPAEQIEAA------IRAALAQRPLASADVRVVATLDLKA--DEAGLLA-LCARHGWPLRAFSAAQLAAS 74 (126)
T ss_pred CCHHHHHHH------HHHHHHHcCCCHHHhheeEehhhhc--CCHHHHH-HHHHhCCCeEEeCHHHHHhc
Confidence 466665433 3356677888888899999987764 3334444 45568999999998886543
No 156
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=46.83 E-value=57 Score=34.17 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHH-HHH--HHhhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF--VYMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eE-A~l--~~~gv~~~~~~~~~~~lv 147 (519)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-++ ..+ ...++..... .+.-.|
T Consensus 15 ~l~~l~~~l~~~g~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 89 (377)
T cd08188 15 ALKLAGRYARRLGAK--KVLLVSDPGVIKAGWVDRVIESLE-EAGLEYVVFSDVSPNPRDEEVMAGAELYLE--NGCDVI 89 (377)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 345555556677764 566676666666544566666654 55888888886432 211 1112211111 122389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||.
T Consensus 90 IaiGGGsv 97 (377)
T cd08188 90 IAVGGGSP 97 (377)
T ss_pred EEeCCchH
Confidence 99999985
No 157
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=46.54 E-value=32 Score=33.60 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhcc
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~ 413 (519)
.||..|...+-.+..... ... .+++.+..-+-+||+.||+|.
T Consensus 5 ~Ha~dV~q~~~~ll~~~~-~~~----------~l~~~e~~alliAal~HDv~H 46 (237)
T PF00233_consen 5 RHAADVLQFVYYLLSNGG-LRE----------YLSPLEIFALLIAALCHDVDH 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHGG-GGT----------TS-HHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHccC-ccc----------cCCHHHHHHHHHHHHHhcCCC
Confidence 688888887766654322 211 267778899999999999995
No 158
>PLN02669 xylulokinase
Probab=46.28 E-value=76 Score=35.21 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=43.1
Q ss_pred CceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCC---------CC--CHHHH-HHHHHHHHHHHHHH
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC---------SI--STQSQ-ARSVESLLMFRDII 79 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g---------~l--s~e~i-~~~~~~L~~f~~~~ 79 (519)
.+++-.||+||.|+|-+|++. +|+..-.......+.+-+.-...| .. +..-. +.+..++++..
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~--~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~--- 81 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS--NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA--- 81 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC--CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH---
Confidence 356788999999999999963 465433333333222222111111 11 11123 55555555543
Q ss_pred HHcCCCCccEEEEEehh
Q 010059 80 QSHNISRDHTRAVATAA 96 (519)
Q Consensus 80 ~~~~v~~~~i~~vATsA 96 (519)
+.+++..+|++++.++
T Consensus 82 -~~~~~~~~I~aIs~s~ 97 (556)
T PLN02669 82 -KEKFPFHKVVAISGSG 97 (556)
T ss_pred -HcCCChhhEEEEEecC
Confidence 2366656799998774
No 159
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=45.87 E-value=1.6e+02 Score=30.46 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhCCceEeeChHH--------------------HHHHHHhhhh-----ccCCCCCCceEEEEECCCceEE
Q 010059 103 KDEFVECVREKVGFEVDVLTGEQ--------------------EAKFVYMGVL-----QFLPVFDRLVLSVDIGGGSTEF 157 (519)
Q Consensus 103 ~~~f~~~i~~~tG~~i~iIsg~e--------------------EA~l~~~gv~-----~~~~~~~~~~lv~DIGGGStEl 157 (519)
...+++.+ .+-++++-.|.|-- --.-.++++. ...+..+-+.+++|||.|.|=.
T Consensus 90 lr~~~~~l-~~~~l~~~~iPgVi~LptVP~~RK~N~IDmGTaDKva~a~lai~~~~~~~gi~y~~~nfIlvEiG~~yta~ 168 (343)
T PF07318_consen 90 LRKLVREL-AESNLPAYFIPGVIHLPTVPAWRKINRIDMGTADKVASAALAIYDQAEREGIEYREVNFILVEIGSGYTAA 168 (343)
T ss_pred HHHHHHHH-HhCCCCEEEeCceeccCCCchHhhhcccccCcHhHHHHHHHHHHhhHHhhCCCcccceEEEEEccCCceEE
Confidence 45677777 45677777777652 2233444443 1234445579999999999999
Q ss_pred EEeeCCeEeeee
Q 010059 158 VIGKRGKVVFCE 169 (519)
Q Consensus 158 ~~~~~~~~~~~~ 169 (519)
+.+++|+++...
T Consensus 169 iaV~~GkIVDGi 180 (343)
T PF07318_consen 169 IAVKNGKIVDGI 180 (343)
T ss_pred EEEECCeEEccc
Confidence 999999998653
No 160
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=44.70 E-value=80 Score=33.15 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHH----HhhhhccCCCCCCceE
Q 010059 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLVL 146 (519)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~----~~gv~~~~~~~~~~~l 146 (519)
+.+..+.++.+|.. ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+ |..+. ......... .-+
T Consensus 18 l~~l~~~~~~~g~~--~~lvvtd~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D~ 90 (382)
T PRK10624 18 IGALTDEVKRRGFK--KALIVTDKTLVKCGVVAKVTDVLD-AAGLAYEIYDGVKPNPTIEVVKEGVEVFKASG----ADY 90 (382)
T ss_pred HHHHHHHHHhcCCC--EEEEEeCcchhhCcchHHHHHHHH-HCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC----CCE
Confidence 44455556666763 577777666666444555555554 4689999987543 22111 111111111 138
Q ss_pred EEEECCCce
Q 010059 147 SVDIGGGST 155 (519)
Q Consensus 147 v~DIGGGSt 155 (519)
|+=|||||+
T Consensus 91 IIaiGGGS~ 99 (382)
T PRK10624 91 LIAIGGGSP 99 (382)
T ss_pred EEEeCChHH
Confidence 999999996
No 161
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=44.30 E-value=79 Score=33.44 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHH--HHhhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF--VYMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l--~~~gv~~~~~~~~~~~lv 147 (519)
++++.-+.++.+|.. ++.+|+...++++.=-+.+.+.++ +.|+++.+.++-+ |-.+ ...++...-. .+.-+|
T Consensus 36 ~~~~l~~~~~~~g~~--~~lvv~~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--HLFVMADSFLHQAGMTAGLTRSLA-VKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEE
Confidence 344555556667763 566676666665433456666654 4588888876544 2211 1122221111 122389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||.
T Consensus 111 iavGGGS~ 118 (395)
T PRK15454 111 IAFGGGSV 118 (395)
T ss_pred EEeCChHH
Confidence 99999995
No 162
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=44.21 E-value=85 Score=32.90 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHH----HhhhhccCCCCCCce
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (519)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++.+ +..+. ......... .-
T Consensus 16 ~l~~l~~~l~~~g~~--r~lvvt~~~~~~~g~~~~v~~~L~-~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D 88 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--KALVVTDKDLIKFGVADKVTDLLD-EAGIAYELFDEVKPNPTITVVKAGVAAFKASG----AD 88 (379)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhccchHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 344455556667764 577777666766544566666654 5689999987643 22111 111111121 13
Q ss_pred EEEEECCCce
Q 010059 146 LSVDIGGGST 155 (519)
Q Consensus 146 lv~DIGGGSt 155 (519)
.|+=|||||+
T Consensus 89 ~IiaiGGGSv 98 (379)
T TIGR02638 89 YLIAIGGGSP 98 (379)
T ss_pred EEEEeCChHH
Confidence 8999999996
No 163
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=43.42 E-value=1e+02 Score=32.10 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHH----HhhhhccCCCCCCce
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (519)
++++..+.+++++.. ++.+|....+.+..-.+.+.+.++ +.|+++.+.++-+ +..+. ........ +.-
T Consensus 10 ~l~~l~~~l~~~~~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~----~~d 82 (370)
T cd08551 10 AIEKLGEEIKNLGGR--KALIVTDPGLVKTGVLDKVIDSLK-EAGIEVVIFDGVEPNPTLSNVDAAVAAYREE----GCD 82 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCCCHHHHHHHHHHHHhc----CCC
Confidence 344555556666763 566676665555333455666654 3578888887532 22222 11111111 113
Q ss_pred EEEEECCCce
Q 010059 146 LSVDIGGGST 155 (519)
Q Consensus 146 lv~DIGGGSt 155 (519)
.|+-|||||+
T Consensus 83 ~IiaiGGGs~ 92 (370)
T cd08551 83 GVIAVGGGSV 92 (370)
T ss_pred EEEEeCCchH
Confidence 8999999996
No 164
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=43.25 E-value=26 Score=35.94 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=74.9
Q ss_pred EEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehh
Q 010059 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (519)
.+|||-=.++.. .++++|....+.. .++.|=++. +++-++|+.+.+ .++.. ...-++=|.=
T Consensus 2 G~DiGGA~~K~a--~~~~~g~~~~v~~--~~~plW~~~-----------~~L~~~l~~~~~---~~~~~-~~~avtMTgE 62 (318)
T TIGR03123 2 GIDIGGANTKAA--ELDEDGRIKEVHQ--LYCPLWKGN-----------DKLAETLKEISQ---DLSSA-DNVAVTMTGE 62 (318)
T ss_pred ccccccceeeeE--EecCCCceeEEEE--ecCcccCCc-----------hHHHHHHHHHHH---hcCcc-ceEEEEeehh
Confidence 378987555554 4554565544432 444455553 222334444443 23331 2344455665
Q ss_pred hhhc-----CChHHHHHHHHHHhCCceEeeCh------HHHHH-H-------HHhhhhccCCCCCCceEEEEECCCceEE
Q 010059 97 VRAA-----ENKDEFVECVREKVGFEVDVLTG------EQEAK-F-------VYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (519)
Q Consensus 97 ~R~A-----~N~~~f~~~i~~~tG~~i~iIsg------~eEA~-l-------~~~gv~~~~~~~~~~~lv~DIGGGStEl 157 (519)
+-++ .--..+++.+.+..+-++.+..+ -++|. . .+.+-...+....++.+++||||=||.+
T Consensus 63 LaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi 142 (318)
T TIGR03123 63 LADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDI 142 (318)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceee
Confidence 5443 22244566777777667666321 22322 2 1221111111113459999999999999
Q ss_pred EEeeCCeEeeeeeeehh
Q 010059 158 VIGKRGKVVFCESVNLG 174 (519)
Q Consensus 158 ~~~~~~~~~~~~SlplG 174 (519)
+.+.+|++.......++
T Consensus 143 ~~i~~G~p~~~~~~d~~ 159 (318)
T TIGR03123 143 IPIIDGEVAAKGKTDLE 159 (318)
T ss_pred EEecCCEeeeeechhhh
Confidence 99999998876555555
No 165
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=43.12 E-value=1.3e+02 Score=30.88 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=23.7
Q ss_pred ccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH
Q 010059 87 DHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ 125 (519)
Q Consensus 87 ~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e 125 (519)
..|...|..| +-..|.+.+.+++|+++++++-.+
T Consensus 284 ~~I~LtGgga-----~~~gl~~~l~~~l~~~v~~~~P~~ 317 (348)
T TIGR01175 284 DGLVLAGGGA-----TLSGLDAAIYQRLGLPTEVANPFA 317 (348)
T ss_pred ceEEEECccc-----cchhHHHHHHHHHCCCeEecChHH
Confidence 3465555433 344688888999999999987543
No 166
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=42.95 E-value=1.3e+02 Score=31.58 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=55.0
Q ss_pred CCCCccEEEEEehhhhhc-CChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEee
Q 010059 83 NISRDHTRAVATAAVRAA-ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK 161 (519)
Q Consensus 83 ~v~~~~i~~vATsA~R~A-~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~ 161 (519)
.+.+++=-++.|++-=.. .|++...+-+.+..+.+-=.+ +..++.... ..-.++|+|+|.|-|-++-+-
T Consensus 94 ~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--------a~qavlya~--g~ttG~VvD~G~gvt~~vPI~ 163 (372)
T KOG0676|consen 94 LVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--------AIQAVLYAS--GRTTGLVVDSGDGVTHVVPIY 163 (372)
T ss_pred ccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--------HHHHHHHHc--CCeeEEEEEcCCCceeeeecc
Confidence 343333345677555444 677777777777665543222 223332112 223489999999999888777
Q ss_pred CCeEe--eeeeeehhHHHHHHh
Q 010059 162 RGKVV--FCESVNLGHVSLSEK 181 (519)
Q Consensus 162 ~~~~~--~~~SlplG~vrl~e~ 181 (519)
+|-.. ....+++|.--|++.
T Consensus 164 eG~~lp~ai~~ldl~G~dlt~~ 185 (372)
T KOG0676|consen 164 EGYALPHAILRLDLAGRDLTDY 185 (372)
T ss_pred cccccchhhheecccchhhHHH
Confidence 66544 345889998888873
No 167
>PRK13331 pantothenate kinase; Reviewed
Probab=42.61 E-value=2.1e+02 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.7
Q ss_pred CCcccccccCCCceEEEEEecccceeeeEEE
Q 010059 1 MATNTSYMQIPQTLFASIDMGTSSFKLLIIR 31 (519)
Q Consensus 1 ~~~~~~~~~~~~~~~AvIDIGSNsirL~I~~ 31 (519)
|..|+|| .+-+||||=.++.+-+++
T Consensus 1 ~~~~~~~------~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 1 MMFHTSN------EWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCCCCC------cEEEEEeCCCcEEEEEEE
Confidence 4445555 467999999999999996
No 168
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=41.12 E-value=3.6e+02 Score=26.93 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=80.9
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (519)
+..||||.-...+... +|....++..--| +-+ .-+|+-++|+++... +.++ .+-+|-|
T Consensus 5 ilGiDIGGAntk~a~~----DG~~~~~d~~YlP------MWk-------~k~rL~~~Lkei~~k---~~~~--~vgvvMT 62 (330)
T COG1548 5 ILGIDIGGANTKIASS----DGDNYKIDHIYLP------MWK-------KKDRLEETLKEIVHK---DNVD--YVGVVMT 62 (330)
T ss_pred EEEeeccCccchhhhc----cCCeeeeeEEEec------ccc-------chhHHHHHHHHHhcc---CCcc--eeEEEee
Confidence 6889999988887762 3544334332222 111 124555677776643 5553 4677889
Q ss_pred hhhhhcCC-----hHHHHHHHHHHhCCceEeeChH-----HHHHHHHhhhh--cc------C-CCCCCceEEEEECCCce
Q 010059 95 AAVRAAEN-----KDEFVECVREKVGFEVDVLTGE-----QEAKFVYMGVL--QF------L-PVFDRLVLSVDIGGGST 155 (519)
Q Consensus 95 sA~R~A~N-----~~~f~~~i~~~tG~~i~iIsg~-----eEA~l~~~gv~--~~------~-~~~~~~~lv~DIGGGSt 155 (519)
+-+-+|=| -+++++.++...+-++.+++-+ -||.-.+.-+. ++ + ....++++++|+|+-.|
T Consensus 63 aELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTt 142 (330)
T COG1548 63 AELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCccc
Confidence 98887744 4678999999999998887532 15544333332 21 1 11235689999999999
Q ss_pred EEEEeeCCe
Q 010059 156 EFVIGKRGK 164 (519)
Q Consensus 156 El~~~~~~~ 164 (519)
.|+-..+|.
T Consensus 143 DIIPi~~ge 151 (330)
T COG1548 143 DIIPIKDGE 151 (330)
T ss_pred ceEeecchh
Confidence 999877663
No 169
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=40.52 E-value=15 Score=23.63 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=19.0
Q ss_pred HHHcCCCChHHHhhcCCCCccchhhHHH
Q 010059 269 RLCCGGDGEVERVRRERFFKRRSEFIVA 296 (519)
Q Consensus 269 ~l~~~~~~~~e~~~~~gl~~~Rad~i~~ 296 (519)
.+...+.+ +++++||+.+..|+.|+.
T Consensus 4 g~~pas~e--eL~~lpGIG~~tA~~I~~ 29 (30)
T PF00633_consen 4 GLIPASIE--ELMKLPGIGPKTANAILS 29 (30)
T ss_dssp HHHTSSHH--HHHTSTT-SHHHHHHHHH
T ss_pred CcCCCCHH--HHHhCCCcCHHHHHHHHh
Confidence 34555666 899999999999887753
No 170
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=40.02 E-value=46 Score=35.76 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.8
Q ss_pred EEEecccceeeeEEEEe
Q 010059 17 SIDMGTSSFKLLIIRAY 33 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~ 33 (519)
+||+|+.++|..+++.+
T Consensus 2 aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 2 AVDLGASSGRVMLASYE 18 (454)
T ss_pred cEeccCCchheEEEEEc
Confidence 79999999999999875
No 171
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=38.10 E-value=1.4e+02 Score=26.76 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=55.6
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
.+.++|.|+-+|=..+.+.. ...-.++...+.. .-.+ ...+...+++++|++. ..+||
T Consensus 3 ~ilalD~G~KrIGvA~sd~~-~~~A~pl~~i~~~-----------~~~~-------~~~~~l~~li~~~~~~---~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDIL-GSLASPLETIKRK-----------NGKP-------QDFNALLKLVKEYQVD---TVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecCC-Cccccchhhheec-----------cccH-------hhHHHHHHHHHHhCCC---EEEEe
Confidence 57899999999988887653 2222233222111 0000 2445556667778774 45665
Q ss_pred -------ehhhhhcCChHHHHHHHHHHhCCceEeeCh
Q 010059 94 -------TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (519)
Q Consensus 94 -------TsA~R~A~N~~~f~~~i~~~tG~~i~iIsg 123 (519)
|... .++-...|.++++++++++|...+.
T Consensus 61 lP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 61 LPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred cCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5555 5556789999999999999988775
No 172
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=37.88 E-value=15 Score=41.57 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=18.5
Q ss_pred HHHHHhhhhccccCC--------CchhhhhHHHH
Q 010059 403 EAACLLHNIGHFTSK--------KGYHKQSCHII 428 (519)
Q Consensus 403 ~~Aa~LhdiG~~I~~--------~~h~~Hs~yiI 428 (519)
-+||+|||||+++-- ..|+++++..+
T Consensus 2 ~~~aLLHDIGK~~~Ra~~~~~~~~~h~~~g~~~~ 35 (648)
T TIGR02578 2 AVAALLHDIGKVIRRAGDCYNEDLKHDKTGYEFI 35 (648)
T ss_pred chhhhhhccchhhhhcccCcccccchhhhhHHHH
Confidence 479999999999974 34555555444
No 173
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=37.76 E-value=49 Score=34.63 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHHH--hhh--hccCCCCCCceE
Q 010059 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGV--LQFLPVFDRLVL 146 (519)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~~--~gv--~~~~~~~~~~~l 146 (519)
+++..+.++.+|.. ++.+|....+.+..=.+.+.+.++ ..|+++.+.++-+ |..+.- .++ .... +.-+
T Consensus 16 l~~l~~~l~~~g~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~----~~D~ 88 (377)
T cd08176 16 IKEIGDELKNLGFK--KALIVTDKGLVKIGVVEKVTDVLD-EAGIDYVIYDGVKPNPTITNVKDGLAVFKKE----GCDF 88 (377)
T ss_pred HHHHHHHHHHhCCC--eEEEECCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc----CCCE
Confidence 44445556666763 566676655554333444555554 4589999998732 222221 111 1112 1238
Q ss_pred EEEECCCce
Q 010059 147 SVDIGGGST 155 (519)
Q Consensus 147 v~DIGGGSt 155 (519)
|+=|||||+
T Consensus 89 IIavGGGS~ 97 (377)
T cd08176 89 IISIGGGSP 97 (377)
T ss_pred EEEeCCcHH
Confidence 999999997
No 174
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.49 E-value=1.5e+02 Score=31.01 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHH--HhhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV--YMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~--~~gv~~~~~~~~~~~lv 147 (519)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-+ +..+. -.++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~g~~--~~lvvt~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~d~I 87 (374)
T cd08189 13 SLAQLPAAISQLGVK--KVLIVTDKGLVKLGLLDKVLEALE-GAGIEYAVYDGVPPDPTIENVEAGLALYRE-N-GCDAI 87 (374)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCcchhhcccHHHHHHHHH-hcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 445555566677763 577777666665322345555443 4588888887642 22221 111111111 1 12389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 88 IaiGGGS~ 95 (374)
T cd08189 88 LAVGGGSV 95 (374)
T ss_pred EEeCCccH
Confidence 99999995
No 175
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=36.62 E-value=2.2e+02 Score=28.69 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=38.0
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeee---eeeccCCCCcCCCCCHHHHHHHHHHHHH
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ---PVILGRDLSSSCSISTQSQARSVESLLM 74 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~---~vrLg~~~~~~g~ls~e~i~~~~~~L~~ 74 (519)
..++|||+.|+-+..++ ++.+ ++...- .+||-+....++..+++.++.+.+.+++
T Consensus 127 ~~v~DiGGGSte~~~~~---~~~~--~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 184 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK---DFEP--GEGVSLPLGCVRLTEQFFPDGPISKKSLKQARKAARE 184 (300)
T ss_pred cEEEEecCCeEEEEEec---CCCE--eEEEEEccceEEhHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999874 2333 232333 3678777777777888777766666554
No 176
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=36.14 E-value=44 Score=34.15 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHH-HHHHHh-hhhccCCCCCCceEEEE
Q 010059 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYM-GVLQFLPVFDRLVLSVD 149 (519)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eE-A~l~~~-gv~~~~~~~~~~~lv~D 149 (519)
+.+..+.++.+|.+ ++.+|....+++ .=.+.+.+.+++. +++.+.++.+. ..+.-. .+...+.. .+.-.|+=
T Consensus 11 l~~l~~~~~~~g~~--~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIa 84 (332)
T cd07766 11 IEKIGEEIKRGGFD--RALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIA 84 (332)
T ss_pred HHHHHHHHHhcCCC--eEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEE
Confidence 44444455566663 577777776666 3334445554433 67777765432 222111 11111111 12248999
Q ss_pred ECCCceE
Q 010059 150 IGGGSTE 156 (519)
Q Consensus 150 IGGGStE 156 (519)
|||||+=
T Consensus 85 iGGGs~~ 91 (332)
T cd07766 85 VGGGSTL 91 (332)
T ss_pred eCCchHH
Confidence 9999963
No 177
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=34.66 E-value=1.8e+02 Score=30.63 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH---HHHHHHhhh--hccCCCCCCce
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ---EAKFVYMGV--LQFLPVFDRLV 145 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e---EA~l~~~gv--~~~~~~~~~~~ 145 (519)
+++...+.++.+|+. ++.+|.+..+.+..=.+.+++.++.+ |+++.|-++-+ .-.-...|+ ...+. .=
T Consensus 16 ~l~~l~~~~~~~g~~--r~liVTd~~~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~~~v~~~~~~~~~~~----~D 88 (377)
T COG1454 16 SLKELGEEVKRLGAK--RALIVTDRGLAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTIETVEAGAEVAREFG----PD 88 (377)
T ss_pred hHHHHHHHHHhcCCC--ceEEEECCccccchhHHHHHHHHHhc-CCeEEEecCCCCCCCHHHHHHHHHHHHhcC----CC
Confidence 566677777788885 68889999988888778888887654 78887776522 111111222 22222 12
Q ss_pred EEEEECCCce
Q 010059 146 LSVDIGGGST 155 (519)
Q Consensus 146 lv~DIGGGSt 155 (519)
.||=+||||.
T Consensus 89 ~iIalGGGS~ 98 (377)
T COG1454 89 TIIALGGGSV 98 (377)
T ss_pred EEEEeCCccH
Confidence 8999999996
No 178
>PRK12408 glucokinase; Provisional
Probab=34.30 E-value=1.5e+02 Score=30.49 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=56.2
Q ss_pred ccc-ccCCC-ceEEEEEecccceeeeEEEEeCCCC----EEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHH
Q 010059 5 TSY-MQIPQ-TLFASIDMGTSSFKLLIIRAYPNGK----FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI 78 (519)
Q Consensus 5 ~~~-~~~~~-~~~AvIDIGSNsirL~I~~~~~~~~----~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~ 78 (519)
|+. +.|++ ..+-++|||...+|+-+++.+ +. ..++...+.++. ..+.++ +++++|.+-
T Consensus 6 ~~~~~~~~~~~~~L~~DIGGT~i~~al~d~~--g~~~~~~~~~~~~~~~t~-----------~~~~~~---~~i~~~~~~ 69 (336)
T PRK12408 6 PSAAVAVPRPESFVAADVGGTHVRVALVCAS--PDAAKPVELLDYRTYRCA-----------DYPSLA---AILADFLAE 69 (336)
T ss_pred ccccccCcccccEEEEEcChhhhheeEEecc--CCccccccccceeEecCC-----------CccCHH---HHHHHHHhc
Confidence 444 44544 448999999999999999643 33 122333333322 112233 334444321
Q ss_pred HHHcCCCCccEEEEEehhh-h-h----cCCh--HHHHHHHHHHhCCc-eEeeChHHHHHHH
Q 010059 79 IQSHNISRDHTRAVATAAV-R-A----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFV 130 (519)
Q Consensus 79 ~~~~~v~~~~i~~vATsA~-R-~----A~N~--~~f~~~i~~~tG~~-i~iIsg~eEA~l~ 130 (519)
...+ .-.++|.... . . +.|- ..+-+.+++++|++ |.+++.-+=+-|.
T Consensus 70 --~~~~---~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~g 125 (336)
T PRK12408 70 --CAPV---RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYA 125 (336)
T ss_pred --CCCc---CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcc
Confidence 1112 2344444443 1 0 2232 23457788899995 9999987766555
No 179
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.70 E-value=60 Score=33.96 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeCh-HHHHHHH--HhhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFV--YMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg-~eEA~l~--~~gv~~~~~~~~~~~lv 147 (519)
++++..+.+++++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++ +.|..+. ..++...-. . +.-.|
T Consensus 10 ~~~~l~~~~~~~~~~--r~livt~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 84 (375)
T cd08194 10 AVDETGAVLADLGGK--RPLIVTDKVMVKLGLVDKLTDSLK-KEGIESAIFDDVVSEPTDESVEEGVKLAKE-G-GCDVI 84 (375)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhcchHHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 455555566666663 567776666664322344444443 45888888865 2233222 111111111 1 11389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 85 IaiGGGS~ 92 (375)
T cd08194 85 IALGGGSP 92 (375)
T ss_pred EEeCCchH
Confidence 99999995
No 180
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=33.18 E-value=5.7e+02 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.3
Q ss_pred CCceEEEEECCCceEEEEeeCCeEeee
Q 010059 142 DRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (519)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~~~~ 168 (519)
+.+.+++-+|+|.. .....+|+++..
T Consensus 173 ~~~~I~~hLGtGig-~~ai~~Gk~vdg 198 (351)
T TIGR02707 173 EMNLIVAHMGGGIS-VAAHRKGRVIDV 198 (351)
T ss_pred cCCEEEEEeCCCce-eeeEECCEEEEc
Confidence 34799999999998 777888887654
No 181
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=33.06 E-value=71 Score=27.15 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=13.6
Q ss_pred ccCCCCCCceEEEEECCCce
Q 010059 136 QFLPVFDRLVLSVDIGGGST 155 (519)
Q Consensus 136 ~~~~~~~~~~lv~DIGGGSt 155 (519)
..++..++-.++.|++|||.
T Consensus 52 ~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 52 EELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHCCTTSEEEEEESSTTSHH
T ss_pred HhccCCCcEEEEeeCCCCcc
Confidence 44443445578899999984
No 182
>PRK10854 exopolyphosphatase; Provisional
Probab=30.83 E-value=2.3e+02 Score=31.15 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=38.6
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeee-eeeccCCCCcCCCCCHHHHHHHHHHHH
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQ-PVILGRDLSSSCSISTQSQARSVESLL 73 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~-~vrLg~~~~~~g~ls~e~i~~~~~~L~ 73 (519)
..-+||||+.|+-+.+++ ++.+....+..- .|||-+..+.++..+++.++++...+.
T Consensus 138 ~~lvvDIGGGStEl~~~~---~~~~~~~~S~~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 195 (513)
T PRK10854 138 RKLVIDIGGGSTELVIGE---NFEPILVESRRMGCVSFAQLYFPGGVISKENFQRARLAAA 195 (513)
T ss_pred CeEEEEeCCCeEEEEEec---CCCeeEeEEEecceeeHHhhhCCCCCCCHHHHHHHHHHHH
Confidence 368999999999999984 344443333322 367777777777788777666555544
No 183
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=30.80 E-value=76 Score=33.62 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.2
Q ss_pred ceEEEEEecccceeeeEEE
Q 010059 13 TLFASIDMGTSSFKLLIIR 31 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~ 31 (519)
++++.||+||.+.+.+|++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMD 20 (432)
T ss_pred ceEEEEEcCchhEEEEEEc
Confidence 3689999999999999985
No 184
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=30.37 E-value=64 Score=27.74 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.0
Q ss_pred eEEEEEecccceeeeEEEEe
Q 010059 14 LFASIDMGTSSFKLLIIRAY 33 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~ 33 (519)
..+.+|+| |-+||++.+++
T Consensus 32 ~~slvD~G-~rFRLi~n~v~ 50 (115)
T PF11762_consen 32 VVSLVDMG-DRFRLIVNEVD 50 (115)
T ss_dssp EEEEEE-S-SSEEEEEEEEE
T ss_pred EEEEeecC-CcEEEEEEEEE
Confidence 46899999 99999999986
No 185
>PRK13321 pantothenate kinase; Reviewed
Probab=29.65 E-value=82 Score=31.02 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.7
Q ss_pred eEEEEECCCceEEEEeeCCeEeeeeeeeh
Q 010059 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (519)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~Slpl 173 (519)
.+.+||||-++-+.+++++++...+.+|-
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i~~~~~~~T 30 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRLLRSFRLPT 30 (256)
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEEec
Confidence 47899999999999999877776666644
No 186
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=29.55 E-value=1.9e+02 Score=31.61 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=52.8
Q ss_pred ceEEEEEecccceeeeEEEEeCCCCEEEEEee-eeeeeccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHc---CCCCc
Q 010059 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTL-KQPVILGRDLSSSCSISTQSQARSVESLLMF-RDIIQSH---NISRD 87 (519)
Q Consensus 13 ~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~-k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f-~~~~~~~---~v~~~ 87 (519)
....+||||--|.-|++.+.. .+...... --.|||-+-.+.++.++++.++.+.+.++.. .++...+ +..
T Consensus 129 ~~~lv~DIGGGStEl~~g~~~---~~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 203 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGDNF---EIGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKEYRIAGWA-- 203 (492)
T ss_pred CCEEEEEecCCeEEEEEecCC---ccceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHHHHhhhhc--
Confidence 346899999999999998632 22222222 2236788888888999999999998887753 4444443 232
Q ss_pred cEEEEEehhh
Q 010059 88 HTRAVATAAV 97 (519)
Q Consensus 88 ~i~~vATsA~ 97 (519)
.+|||+.-
T Consensus 204 --~~vg~sGT 211 (492)
T COG0248 204 --GLVGTSGT 211 (492)
T ss_pred --cEEEccHH
Confidence 26887754
No 187
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.41 E-value=1.9e+02 Score=30.18 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCccEEEEEehhh-hhcCChHHHHHHHHHHhCCceEeeChHH-----HHHHHHhhhhccCCCCCCceE
Q 010059 73 LMFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVL 146 (519)
Q Consensus 73 ~~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~f~~~i~~~tG~~i~iIsg~e-----EA~l~~~gv~~~~~~~~~~~l 146 (519)
.+..+.++.+| + ++.+|..... +...=.+.+.+.++ +.|+++.+.++-+ |.-........... .-.
T Consensus 15 ~~l~~~~~~~g-~--r~livt~~~~~~~~g~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D~ 86 (380)
T cd08185 15 NELGEEALKPG-K--KALIVTGNGSSKKTGYLDRVIELLK-QAGVEVVVFDKVEPNPTTTTVMEGAALAREEG----CDF 86 (380)
T ss_pred HHHHHHHHhcC-C--eEEEEeCCCchhhccHHHHHHHHHH-HcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC----CCE
Confidence 33334445555 2 5666665443 44332344554444 3588898887643 21111111122221 238
Q ss_pred EEEECCCce
Q 010059 147 SVDIGGGST 155 (519)
Q Consensus 147 v~DIGGGSt 155 (519)
|+=|||||+
T Consensus 87 IiavGGGS~ 95 (380)
T cd08185 87 VVGLGGGSS 95 (380)
T ss_pred EEEeCCccH
Confidence 999999995
No 188
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=29.40 E-value=22 Score=34.53 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHhhhhcc--------ccC--CCchhhhhHHH
Q 010059 396 DKDLEYLEAACLLHNIGH--------FTS--KKGYHKQSCHI 427 (519)
Q Consensus 396 ~~~~~lL~~Aa~LhdiG~--------~I~--~~~h~~Hs~yi 427 (519)
+..+++++.|-.|||||+ +.+ +..|---|+|+
T Consensus 48 e~v~~~vk~AiilHDiGKa~~~yQ~~~~~~~~~~HE~~Say~ 89 (230)
T COG2254 48 EKVEELVKLAIILHDIGKASEAYQKGRGNDCFYYHELVSAYF 89 (230)
T ss_pred HHHHHHHHHeeEEeechhhHHHHHHhcccCcccchhhHHHHH
Confidence 346789999999999998 455 56677778875
No 189
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=44 Score=27.51 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=15.2
Q ss_pred EEEEEecccceeeeEEEE
Q 010059 15 FASIDMGTSSFKLLIIRA 32 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~ 32 (519)
--|+|||.|+.||++.=.
T Consensus 56 r~Vfdi~GN~yRLIvhv~ 73 (98)
T COG4680 56 RVVFDIGGNKYRLIVHVA 73 (98)
T ss_pred eEEEEcCCCEEEEEEEEE
Confidence 369999999999998743
No 190
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=28.59 E-value=1.5e+02 Score=29.91 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=72.4
Q ss_pred eEEEEECCCceEEEEeeCCeEeeeeeeehhHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhcCCeEEEeeh
Q 010059 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSS 224 (519)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~iG~g 224 (519)
.+++.=|+-||.+.+|++.+..+..++.--.-.| ++|... + ++..--++.+.+.+.+... .-..+.-++|-|
T Consensus 5 iltINPGststKlaVfe~ek~ife~tlrhs~eEl-~~f~~i-~--dQ~~fR~~~i~~~i~e~g~----~i~~~dAvvgRG 76 (358)
T COG3426 5 ILTINPGSTSTKLAVFEDEKEIFEKTLRHSLEEL-EKFKRI-P--DQFEFRKDAILEFIDEQGY----NISKFDAVVGRG 76 (358)
T ss_pred EEEecCCCccceEEEecCchHhhHHHhhcCHHHH-HHHhhh-h--HhHhHHHHHHHHHHHHhCC----CcCCccceeecC
Confidence 6888899999999999998887766554333111 223321 1 1111112233333332111 112455688988
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCccccccCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHH
Q 010059 225 GTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEI 304 (519)
Q Consensus 225 Gt~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~i~~~~l~~l~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l 304 (519)
|-.+-+ .. ..|.++.+=++.+... ..- +-+.- -|++|-.++
T Consensus 77 GLL~pi------------~g---------GTY~Vn~~M~~~lk~~----~~G------------~haSn--LGaiiA~~i 117 (358)
T COG3426 77 GLLRPI------------PG---------GTYVVNEKMLKDLKNG----VQG------------EHASN--LGAIIANRI 117 (358)
T ss_pred cccccc------------CC---------ceeEeCHHHHHHHHcC----CCC------------cchhh--hhHHHHHHH
Confidence 854311 11 1477777555554322 111 11111 578889999
Q ss_pred HHHhCCCeEEECCcch
Q 010059 305 FELLGIEEMEVSGYGL 320 (519)
Q Consensus 305 ~~~~~~~~i~vs~~gl 320 (519)
.+.+|++..+|-...+
T Consensus 118 a~~~gvPayIVDPvvV 133 (358)
T COG3426 118 AKALGVPAYIVDPVVV 133 (358)
T ss_pred hhhcCCCeeeeCceeh
Confidence 9999999999977654
No 191
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=28.10 E-value=61 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhhhhccccCCCchhh
Q 010059 397 KDLEYLEAACLLHNIGHFTSKKGYHK 422 (519)
Q Consensus 397 ~~~~lL~~Aa~LhdiG~~I~~~~h~~ 422 (519)
..+.++.++++|||+|+-.-+..--.
T Consensus 163 ~n~dli~Ag~ilHdigK~~el~~~~~ 188 (287)
T COG3481 163 VNRELIYAGAILHDIGKVLELTGPEA 188 (287)
T ss_pred ccHHHHHHHHHHhcccccccCCCccc
Confidence 45789999999999999887665443
No 192
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=27.88 E-value=93 Score=32.54 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHH-HHHH--HhhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV--YMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eE-A~l~--~~gv~~~~~~~~~~~lv 147 (519)
++++..+.++.++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-+. ..+. -.++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~~~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAK--RVLVVTDPGILKAGLIDPLLASLE-AAGIEVTVFDDVEADPPEAVVEAAVEAARA-A-GADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 344555556666663 566676666655333455555443 45888887764322 1111 111111111 1 12389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 88 IaiGGGs~ 95 (376)
T cd08193 88 IGFGGGSS 95 (376)
T ss_pred EEeCCchH
Confidence 99999996
No 193
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=27.52 E-value=2.1e+02 Score=29.59 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHH-HHHH----HhhhhccCCCCCCceEE
Q 010059 73 LMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV----YMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 73 ~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eE-A~l~----~~gv~~~~~~~~~~~lv 147 (519)
+++.+.++.++.. ++.+|....+.+ .=.+.+.+.++...++++.++++-|+ ..+. .......... ++.-+|
T Consensus 12 ~~l~~~~~~~~~~--k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-~r~d~I 87 (344)
T cd08169 12 ESVESYTTRDLFD--QYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGA-NRRTAI 87 (344)
T ss_pred HHHHHHHHhcCCC--eEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCcEE
Confidence 3344445555553 566677666655 12223333332214777778875333 2221 1111222221 233589
Q ss_pred EEECCCceE
Q 010059 148 VDIGGGSTE 156 (519)
Q Consensus 148 ~DIGGGStE 156 (519)
+=|||||+-
T Consensus 88 IaiGGGsv~ 96 (344)
T cd08169 88 VAVGGGATG 96 (344)
T ss_pred EEECCcHHH
Confidence 999999864
No 194
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=27.21 E-value=99 Score=32.10 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCCccEEEEEehhh-hhcCChHHHHHHHHHHhCCceEeeChH-HHHHHHHh--hhhccCCCCCCceEEEE
Q 010059 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVYM--GVLQFLPVFDRLVLSVD 149 (519)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~f~~~i~~~tG~~i~iIsg~-eEA~l~~~--gv~~~~~~~~~~~lv~D 149 (519)
+..+.++++| . ++.+|....+ +.+.-.+.+.+.++ +.|+++.+.++- .+..+.-. ++..... .+.-+|+=
T Consensus 16 ~l~~~~~~~g-~--r~lvVt~~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 89 (357)
T cd08181 16 KHGEELAALG-K--RALIVTGKSSAKKNGSLDDVTKALE-ELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG 89 (357)
T ss_pred HHHHHHHHcC-C--EEEEEeCCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 3334455566 3 5666765554 54444466666654 458888888753 23322211 1111111 11239999
Q ss_pred ECCCce
Q 010059 150 IGGGST 155 (519)
Q Consensus 150 IGGGSt 155 (519)
|||||+
T Consensus 90 vGGGSv 95 (357)
T cd08181 90 IGGGSP 95 (357)
T ss_pred eCCchH
Confidence 999995
No 195
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=27.16 E-value=51 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=32.8
Q ss_pred hhhhhcCChHHHHHHHHHHh---CCceEeeChHHHHHHHHhhhh
Q 010059 95 AAVRAAENKDEFVECVREKV---GFEVDVLTGEQEAKFVYMGVL 135 (519)
Q Consensus 95 sA~R~A~N~~~f~~~i~~~t---G~~i~iIsg~eEA~l~~~gv~ 135 (519)
..+.+|.|-++|+..|++++ -++-.+-.|-||-|..|.-+.
T Consensus 3 r~fl~~~~Eqells~IkkeveaGkLP~~va~gmeelY~NYk~AV 46 (77)
T PF14829_consen 3 RTFLDARSEQELLSGIKKEVEAGKLPANVAAGMEELYQNYKNAV 46 (77)
T ss_dssp -GGGG--SHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHH
Confidence 46789999999999999876 589999999999999998544
No 196
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=26.89 E-value=76 Score=29.05 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhhhccccCCCchhh
Q 010059 398 DLEYLEAACLLHNIGHFTSKKGYHK 422 (519)
Q Consensus 398 ~~~lL~~Aa~LhdiG~~I~~~~h~~ 422 (519)
++..|..+|++||.|+.+.+.+-.+
T Consensus 114 d~dWlHLtaLiHDLGKvl~f~GepQ 138 (204)
T KOG1573|consen 114 DEDWLHLTALIHDLGKVLAFGGEPQ 138 (204)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCcc
Confidence 3567999999999999986665444
No 197
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=26.43 E-value=64 Score=33.70 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=55.7
Q ss_pred cCCCCccEEEEEehhhhh-cCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCCCCCCceEEEEECCCceEEEEe
Q 010059 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (519)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~ 160 (519)
.++++...=++-|++.=+ -.|++...+...+...++.=-|- .++-+.. +......++|+|||+++|-++-+
T Consensus 100 Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~--k~~v~~A------FA~GrstalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 100 LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLA--KTAVCTA------FANGRSTALVVDIGATHTSVSPV 171 (426)
T ss_pred hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEe--chHHHHH------HhcCCCceEEEEecCCCceeeee
Confidence 356666666677776533 24566666666776666654443 2333332 32234558999999999999999
Q ss_pred eCCeEee--eeeeehhHHHHHH
Q 010059 161 KRGKVVF--CESVNLGHVSLSE 180 (519)
Q Consensus 161 ~~~~~~~--~~SlplG~vrl~e 180 (519)
.+|-++. .+.=|||.=-|..
T Consensus 172 ~DG~Vlqk~vvks~laGdFl~~ 193 (426)
T KOG0679|consen 172 HDGYVLQKGVVKSPLAGDFLND 193 (426)
T ss_pred ecceEeeeeeEecccchHHHHH
Confidence 9887663 2334566544443
No 198
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=26.32 E-value=91 Score=28.94 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHhhhhccccCCCchhhh
Q 010059 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (519)
Q Consensus 361 ~ha~~V~~~a~~lfd~l~~~~~l~~~~~~~~~~~~~~~~~lL~~Aa~LhdiG~~I~~~~h~~H 423 (519)
.|+..++.+|..|...+ + .....-.-+|++|||||..+-.....++
T Consensus 97 ~~s~~~a~~a~~la~~~----~-------------~~~~~~a~~~gLL~~iG~l~l~~~~~~~ 142 (196)
T PF08668_consen 97 RHSLAAAAIARRLAREL----G-------------FDDPDEAYLAGLLHDIGKLLLLSLFPEY 142 (196)
T ss_dssp HHHHHHHHHHHHHHHHC----T-------------CCHHHHHHHHHHHTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHc----C-------------CCCHHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 57777777777665433 2 1224668899999999998866555444
No 199
>PRK13318 pantothenate kinase; Reviewed
Probab=26.07 E-value=1.1e+02 Score=30.09 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.4
Q ss_pred eEEEEECCCceEEEEeeCCeEeeeeeeeh
Q 010059 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (519)
Q Consensus 145 ~lv~DIGGGStEl~~~~~~~~~~~~Slpl 173 (519)
.+.+||||-++.+.+++++++....++|.
T Consensus 2 iL~IDIGnT~iK~al~d~g~i~~~~~~~t 30 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKLVAHWRIST 30 (258)
T ss_pred EEEEEECCCcEEEEEEECCEEEEEEEEeC
Confidence 47899999999999999888877666654
No 200
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=26.05 E-value=1.3e+02 Score=30.95 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCc--eEeeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 010059 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE--VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (519)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~--i~iIsg~eEA~l~~~gv~~~~~~~~~~~lv~D 149 (519)
+.+..+.++.+| . ++.+|....+.+ ...+.+.+.+++. |+. +.+.+|+-.-.-.-.++...-. . +.-+|+=
T Consensus 11 ~~~l~~~~~~~g-~--~~liv~~~~~~~-~~~~~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~-~-~~d~IIa 83 (349)
T cd08550 11 IKEIAAILSTFG-S--KVAVVGGKTVLK-KSRPRFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEE-Q-EADVIIG 83 (349)
T ss_pred HHHHHHHHHHcC-C--eEEEEEChHHHH-HHHHHHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHh-c-CCCEEEE
Confidence 444444556676 3 455566555544 4455666665543 664 3455654111111111111111 1 2238999
Q ss_pred ECCCceE
Q 010059 150 IGGGSTE 156 (519)
Q Consensus 150 IGGGStE 156 (519)
|||||+=
T Consensus 84 vGGGs~~ 90 (349)
T cd08550 84 VGGGKTL 90 (349)
T ss_pred ecCcHHH
Confidence 9999963
No 201
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.74 E-value=2.7e+02 Score=29.20 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHHHHHHHHHc---CCCCccEEEEEehhhhh-cCChHHHHHHHHHHhCCceEeeChHH-HHH----HHHhhhhccCCCCC
Q 010059 72 LLMFRDIIQSH---NISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQ-EAK----FVYMGVLQFLPVFD 142 (519)
Q Consensus 72 L~~f~~~~~~~---~v~~~~i~~vATsA~R~-A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~----l~~~gv~~~~~~~~ 142 (519)
+++..+.++.+ |.+ ++.+|....+.. ..--+.+.+.++ +.|+++.+.++-+ +.. -..........
T Consensus 11 ~~~l~~~l~~~~~~g~k--r~livtd~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--- 84 (383)
T cd08186 11 IEKIGEILKDLKSKGIS--KVLLVTGKSAYKKSGAWDKVEPALD-EHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--- 84 (383)
T ss_pred HHHHHHHHHHhcccCCC--EEEEEcCccHHhhcChHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 33444444444 553 566666544433 322355666554 4699999887543 111 11111122221
Q ss_pred CceEEEEECCCce
Q 010059 143 RLVLSVDIGGGST 155 (519)
Q Consensus 143 ~~~lv~DIGGGSt 155 (519)
.-+|+=|||||+
T Consensus 85 -~D~IIaiGGGS~ 96 (383)
T cd08186 85 -AQAVIAIGGGSP 96 (383)
T ss_pred -CCEEEEeCCccH
Confidence 138999999996
No 202
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=25.61 E-value=1.4e+02 Score=30.71 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=38.4
Q ss_pred HHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHH--HH-HhhhhccCCCCCCceEEEEECC
Q 010059 76 RDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAK--FV-YMGVLQFLPVFDRLVLSVDIGG 152 (519)
Q Consensus 76 ~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~--l~-~~gv~~~~~~~~~~~lv~DIGG 152 (519)
.+.++.++.. .++.+|....+.+. .++.+.+.++ +.|+++.+.+++.+.. +. ...+...+.. +.-+|+=|||
T Consensus 15 ~~~~~~~~~~-~kvlivtd~~~~~~-~~~~i~~~L~-~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGG 89 (332)
T cd08549 15 GPIINKIGVN-SKIMIVCGNNTYKV-AGKEIIERLE-SNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGS 89 (332)
T ss_pred HHHHHHcCCC-CcEEEEECCcHHHH-HHHHHHHHHH-HcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECC
Confidence 3344445532 25666766655554 2455555543 4588888876543321 11 1111111111 2348999999
Q ss_pred Cce
Q 010059 153 GST 155 (519)
Q Consensus 153 GSt 155 (519)
||+
T Consensus 90 Gsv 92 (332)
T cd08549 90 GTI 92 (332)
T ss_pred cHH
Confidence 986
No 203
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=25.55 E-value=1.1e+02 Score=28.02 Aligned_cols=91 Identities=16% Similarity=0.294 Sum_probs=47.2
Q ss_pred eEEEEeCCCCEEEEEee----eeeee---ccCCCC--cCCCCCHHHHHHHHHHHHHHHHHH-HHc--CCCCccEEEEEeh
Q 010059 28 LIIRAYPNGKFLTIDTL----KQPVI---LGRDLS--SSCSISTQSQARSVESLLMFRDII-QSH--NISRDHTRAVATA 95 (519)
Q Consensus 28 ~I~~~~~~~~~~~i~~~----k~~vr---Lg~~~~--~~g~ls~e~i~~~~~~L~~f~~~~-~~~--~v~~~~i~~vATs 95 (519)
++++.+.+|.+++++-. +..+| .|.|-. ....+.....+.+...|..|++.+ +.+ ...|.+|..|+.+
T Consensus 33 vviQlD~~g~~rvv~g~~~~l~g~~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~ 112 (157)
T PF11713_consen 33 VVIQLDIDGEYRVVYGDPSKLQGKVRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCS 112 (157)
T ss_dssp EEEECCCTCGEEEEEEEGGGC-SEEEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS
T ss_pred EEEEEcCCCCEEEEEeChHHcCCCceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEec
Confidence 35555555666666522 22232 444433 344455555666667776666544 334 3457889999988
Q ss_pred hhhhcCC----hHHHHHHHHHHhCCceEe
Q 010059 96 AVRAAEN----KDEFVECVREKVGFEVDV 120 (519)
Q Consensus 96 A~R~A~N----~~~f~~~i~~~tG~~i~i 120 (519)
-... .. +..|...+.++ |++..|
T Consensus 113 l~~~-~~~~~fa~~f~~~L~~~-gi~~~V 139 (157)
T PF11713_consen 113 LADN-NKQESFALQFAQALKKQ-GINASV 139 (157)
T ss_dssp -S-T-TGGGSHHHHHHHHHHHH-HHCEEE
T ss_pred ccCC-cccccHHHHHHHHHHhc-CCcceE
Confidence 7665 22 44555555555 665444
No 204
>PRK00292 glk glucokinase; Provisional
Probab=25.44 E-value=5.1e+02 Score=26.08 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=62.6
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (519)
.+.+||||..++|+.+++.+ ++. ++...+.++. . .+...+++..|.+. ..+.+. .-.++|
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~-~~~--~~~~~~~~~~---~-----------~~~~~~~l~~~l~~--~~~~~~-~gigIg 62 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWA-NGE--IEQIKTYATA---D-----------YPSLEDAIRAYLAD--EHGVQV-RSACFA 62 (316)
T ss_pred eEEEEEcCccceEEEEEecC-CCc--eeeeEEEecC---C-----------CCCHHHHHHHHHHh--ccCCCC-ceEEEE
Confidence 47899999999999999753 332 2443333322 1 11133444444332 122111 123444
Q ss_pred ehhhhh-----cCCh--HHHHHHHHHHhCCc-eEeeChHHHHHHHHh----------hhhccCCCCCCceEEEEECCCc
Q 010059 94 TAAVRA-----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYM----------GVLQFLPVFDRLVLSVDIGGGS 154 (519)
Q Consensus 94 TsA~R~-----A~N~--~~f~~~i~~~tG~~-i~iIsg~eEA~l~~~----------gv~~~~~~~~~~~lv~DIGGGS 154 (519)
....-+ ..|. ....+.+++++|++ |.+.+.-+=+-|.-. |..... ..++.+++-+|.|=
T Consensus 63 ~pG~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~--~~~~~~~v~~GTGi 139 (316)
T PRK00292 63 IAGPVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPV--PGAPIAVIGPGTGL 139 (316)
T ss_pred EeCcccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCC--CCCcEEEEEcCCcc
Confidence 433211 1121 11247788899996 999998777666532 221110 12457778777663
No 205
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=25.23 E-value=4.1e+02 Score=22.30 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=28.6
Q ss_pred hcCC-CCccchhhHHHHHHHHHHHHHHhCCCeEEECCcc-hHHHHHHHHHhhhcCCCCCcchhhHHHHHHHHHHhcCcc
Q 010059 282 RRER-FFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYG-LGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKK 358 (519)
Q Consensus 282 ~~~g-l~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~g-lreGll~~~l~~~~~~~~~~~~~~~~s~~~~~~ry~~~~ 358 (519)
+..| +.++-|+.+ |.-++..|.+.+|-..++++..- +.--.-...+.+.+. -.++..+|.+|+...
T Consensus 19 ~~~g~i~~~~a~~i--g~~~~~~L~~~~gG~~iyiP~~~~~~~~~R~~~I~~~f~---------G~n~~eLA~kyglS~ 86 (108)
T PF08765_consen 19 ERLGEIDAELAEII--GEEVALKLCRYFGGQQIYIPKCDRLLRALRNREIRREFN---------GMNVRELARKYGLSE 86 (108)
T ss_dssp HHTS-S-----TTS--HHHHHHHHHHHH-SS------SHHHHHHHHHHHHHHH-----------SS-HHHHHHHHT--H
T ss_pred HHcCCcchhHHHHH--HHHHHHHHHHHHCCEeEEeeCccHHHHHHHHHHHHHHhC---------CCCHHHHHHHHCcCH
Confidence 3355 777778887 66677999999999999998753 111111112222221 124678999997753
No 206
>PRK03011 butyrate kinase; Provisional
Probab=24.43 E-value=8.2e+02 Score=25.48 Aligned_cols=148 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred CceEEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 010059 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (519)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~ 91 (519)
...+=+|.-||.|.++-+|+-+..---+.+..-.+...-...+ ++..=-.++...+.+++.|+...++.+
T Consensus 1 ~~~il~inpgststk~a~~~~~~~~~~~~~~h~~~~~~~~~~~----------~~q~~~r~~~i~~~l~~~g~~~~~l~a 70 (358)
T PRK03011 1 MMRILVINPGSTSTKIAVFEDEKPIFEETLRHSAEELEKFKTI----------IDQYEFRKQAILDFLKEHGIDLSELDA 70 (358)
T ss_pred CCEEEEEcCCCchheEEEEcCCceeeeeccccCHHHHhcCCCc----------cchHHHHHHHHHHHHHHcCCChhcceE
Q ss_pred EEeh-----hhhhcCC----------------------hHHHHHHHHHHhCCceEeeCh------HHHHHHHHh------
Q 010059 92 VATA-----AVRAAEN----------------------KDEFVECVREKVGFEVDVLTG------EQEAKFVYM------ 132 (519)
Q Consensus 92 vATs-----A~R~A~N----------------------~~~f~~~i~~~tG~~i~iIsg------~eEA~l~~~------ 132 (519)
|+-- .+.--.. +.....++.++.|+++-|.+- .++||+.-+
T Consensus 71 v~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~~p~~v~D~~~~~~~~~~a~~~~lp~i~R~ 150 (358)
T PRK03011 71 VVGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELGIPAFIVDPVVVDEMEPVARISGLPEIERK 150 (358)
T ss_pred EEEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCCEEEECCcccccCCHHHHHcCCCCccee
Q ss_pred ---------------hhhccCCCCCCceEEEEECCCceEEEEeeCCeEeeeee
Q 010059 133 ---------------GVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (519)
Q Consensus 133 ---------------gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~~~S 170 (519)
+-....+..+.+.+++-+|+|. -+....+|+++...+
T Consensus 151 ~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi-g~gai~~Gk~idgs~ 202 (358)
T PRK03011 151 SIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI-SVGAHRKGRVIDVNN 202 (358)
T ss_pred ecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc-eeeEEECCEEEecCC
No 207
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.93 E-value=86 Score=35.63 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.5
Q ss_pred ceEEEEECCCceEEEEeeCCeEeeeeeeehh
Q 010059 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (519)
Q Consensus 144 ~~lv~DIGGGStEl~~~~~~~~~~~~SlplG 174 (519)
+.+++|+||=||-++.+.+|.+..+...-++
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e~~v~ 309 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSETEVA 309 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeeccceEE
Confidence 4899999999999999999988765554444
No 208
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=23.82 E-value=1.6e+02 Score=25.78 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=51.5
Q ss_pred EEEecccceeeeEEEEeCCCCE-EEEEeeeeeeeccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE--
Q 010059 17 SIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA-- 93 (519)
Q Consensus 17 vIDIGSNsirL~I~~~~~~~~~-~~i~~~k~~vrLg~~~~~~g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vA-- 93 (519)
+||.|+..+=+.+.+. .+.+ .++...... . ....+..+.+++++|++. -.+||
T Consensus 2 aiD~G~kriGvA~~d~--~~~~a~pl~~i~~~-----~--------------~~~~~~~l~~~i~~~~~~---~iVvGlP 57 (130)
T TIGR00250 2 GLDFGTKSIGVAGQDI--TGWTAQGIPTIKAQ-----D--------------GEPDWSRIEELLKEWTPD---KIVVGLP 57 (130)
T ss_pred eEccCCCeEEEEEECC--CCCEEeceEEEEec-----C--------------CcHHHHHHHHHHHHcCCC---EEEEecc
Confidence 6899998887776643 2322 222211110 0 003456777788899984 45676
Q ss_pred ----ehhhhhcCChHHHHHHHHHHhCCceEeeCh
Q 010059 94 ----TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (519)
Q Consensus 94 ----TsA~R~A~N~~~f~~~i~~~tG~~i~iIsg 123 (519)
-+.=..|.-...|.++++.++|++|..++.
T Consensus 58 ~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 58 LNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 222233445568999999999999998874
No 209
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=23.60 E-value=4.2e+02 Score=27.38 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=61.7
Q ss_pred HHHHHHHH--HHHHcCCCCccEEEEEe-hhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhccCC---CCC-
Q 010059 70 ESLLMFRD--IIQSHNISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLP---VFD- 142 (519)
Q Consensus 70 ~~L~~f~~--~~~~~~v~~~~i~~vAT-sA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~~~~---~~~- 142 (519)
++|.+|.+ +.+....++++-...-| .-+-.++|+++..+...+....+ |---|--.+++...+.. ..+
T Consensus 86 d~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvp-----glyiAVqavLALaaswts~~v~er 160 (415)
T KOG0678|consen 86 DLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVP-----GLYIAVQAVLALAASWTSRQVGER 160 (415)
T ss_pred HHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCc-----hHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45666655 33444555544444444 45677888888877777765544 43333333333332221 111
Q ss_pred -CceEEEEECCCceEEEEeeCCeEeee--eeeehhH
Q 010059 143 -RLVLSVDIGGGSTEFVIGKRGKVVFC--ESVNLGH 175 (519)
Q Consensus 143 -~~~lv~DIGGGStEl~~~~~~~~~~~--~SlplG~ 175 (519)
-.++|+|-|-|-|-++....|-++-+ .++|+-.
T Consensus 161 ~ltG~VidsGdgvThvipvaEgyVigScik~iPiag 196 (415)
T KOG0678|consen 161 FLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAG 196 (415)
T ss_pred eeeeEEEecCCCeeEEEEeecceEEeeeeccccccC
Confidence 24799999999999999988887754 5666644
No 210
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.50 E-value=1.9e+02 Score=30.06 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 010059 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (519)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~e-EA~l~~--~gv~~~~~~~~~~~lv 147 (519)
++++..+.++.+|.+ ++.+|....+. -.+.+.+.++ +.|+++.+.++-+ +..+.- .++..... .+ .-.|
T Consensus 10 ~l~~l~~~~~~~g~~--~~livtd~~~~---~~~~~~~~l~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~-~D~I 81 (367)
T cd08182 10 AIAKLPSLLKGLGGK--RVLLVTGPRSA---IASGLTDILK-PLGTLVVVFDDVQPNPDLEDLAAGIRLLRE-FG-PDAV 81 (367)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCchHH---HHHHHHHHHH-HcCCeEEEEcCcCCCcCHHHHHHHHHHHHh-cC-cCEE
Confidence 344555556666763 57777766665 1233444443 4578888876543 222221 11111111 11 1389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 82 IavGGGs~ 89 (367)
T cd08182 82 LAVGGGSV 89 (367)
T ss_pred EEeCCcHH
Confidence 99999995
No 211
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=23.45 E-value=1.1e+02 Score=31.47 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeC---hHHHHHHHHh-hhhccCCCCCCceEE
Q 010059 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT---GEQEAKFVYM-GVLQFLPVFDRLVLS 147 (519)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIs---g~eEA~l~~~-gv~~~~~~~~~~~lv 147 (519)
+++..+.++.++.. ++.+|....+.++. .+.+.+.++ +.|+++.+.+ ++.+..+.-. .+...... +.-.|
T Consensus 11 l~~l~~~~~~~~~~--~~livtd~~~~~~~-~~~v~~~l~-~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~I 84 (348)
T cd08175 11 LERLPEILKEFGYK--KALIVADENTYAAA-GKKVEALLK-RAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLI 84 (348)
T ss_pred HHHHHHHHHhcCCC--cEEEEECCcHHHHH-HHHHHHHHH-HCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEE
Confidence 33444455566663 56666655555543 555555543 4688776543 3212322211 11111111 22389
Q ss_pred EEECCCce
Q 010059 148 VDIGGGST 155 (519)
Q Consensus 148 ~DIGGGSt 155 (519)
+=|||||+
T Consensus 85 IaIGGGs~ 92 (348)
T cd08175 85 IAVGSGTI 92 (348)
T ss_pred EEECCcHH
Confidence 99999996
No 212
>PF13941 MutL: MutL protein
Probab=22.03 E-value=1.9e+02 Score=31.31 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=37.4
Q ss_pred EEEEEecccceeeeEEEEeCCCCEEEEEeeeeeeeccC-CCCcCCCCCHHHHHHHHHHHHHH
Q 010059 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMF 75 (519)
Q Consensus 15 ~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~vrLg~-~~~~~g~ls~e~i~~~~~~L~~f 75 (519)
+-++||||-..+...++.. .+..+++..-+.++.... ++ ..++.++++.|++-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~-~~~~~~ig~a~apTTv~~~Dv-------~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV-DGEPRLIGQAEAPTTVEPGDV-------TIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEecc-CCccEEEEEEeCCCCcCcccH-------HHHHHHHHHHHHHh
Confidence 4589999999999999954 578888888777766644 22 24566555555543
No 213
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=21.53 E-value=1.4e+02 Score=28.77 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=24.7
Q ss_pred eEEEEECCCceEEEEee-CCeEeeeeeeehh
Q 010059 145 VLSVDIGGGSTEFVIGK-RGKVVFCESVNLG 174 (519)
Q Consensus 145 ~lv~DIGGGStEl~~~~-~~~~~~~~SlplG 174 (519)
.+.+|||..|+-+++++ +|+++...+.++-
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~ 32 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIVASASRPYP 32 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeCCCCEEEEEEEeee
Confidence 48899999999999987 6778877776653
No 214
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=21.34 E-value=2.6e+02 Score=28.62 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHH
Q 010059 58 CSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129 (519)
Q Consensus 58 g~ls~e~i~~~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l 129 (519)
...+.+.++.+ +.+.++++|+++..+.++||-.++. .+.-+-++-++.|++++..|.+|=+..
T Consensus 203 rg~~~e~i~~a------i~~~L~~~~i~~~~i~~iatid~K~---~E~gL~~~a~~lg~pl~~~~~~~L~~~ 265 (315)
T PRK05788 203 KGVSAEEIAEA------VERALEALNIDPRAVKAIASITLKK---DEPGLLQLAEELGVPFITFSKEELNEV 265 (315)
T ss_pred CCCCHHHHHHH------HHHHHHHcCCCHHHccEEeeeeccC---CCHHHHHHHHHhCCCeEEeCHHHHhhc
Confidence 34577776654 3445667788888899999986654 334455555678999999998776654
No 215
>PRK12440 acetate kinase; Reviewed
Probab=21.33 E-value=2.1e+02 Score=30.36 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCCceEEEEEecccceeeeEEEEe
Q 010059 10 IPQTLFASIDMGTSSFKLLIIRAY 33 (519)
Q Consensus 10 ~~~~~~AvIDIGSNsirL~I~~~~ 33 (519)
|+++.+-||-.||+|+++.+++.+
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~ 24 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSV 24 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecC
Confidence 467889999999999999999875
No 216
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=21.08 E-value=4e+02 Score=27.53 Aligned_cols=71 Identities=28% Similarity=0.347 Sum_probs=34.9
Q ss_pred HHHHcCCCCccEEEEEehhhhhcCChHHHHHHHH---HHhCCceEe--eCh-HHHHH----HHHhhhhccCCCCCCceEE
Q 010059 78 IIQSHNISRDHTRAVATAAVRAAENKDEFVECVR---EKVGFEVDV--LTG-EQEAK----FVYMGVLQFLPVFDRLVLS 147 (519)
Q Consensus 78 ~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~---~~tG~~i~i--Isg-~eEA~----l~~~gv~~~~~~~~~~~lv 147 (519)
.++.++. .++.+|....+.+ .+.+++. +..|+++.+ +++ +.+.. ............ ++.-+|
T Consensus 25 ~l~~~~~--~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~-~r~d~I 96 (358)
T PRK00002 25 LLAPLKG--KKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGL-DRSDTL 96 (358)
T ss_pred HHHhcCC--CeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCCEE
Confidence 3344443 2566666666644 2444443 345787774 443 32222 222222222221 123489
Q ss_pred EEECCCceE
Q 010059 148 VDIGGGSTE 156 (519)
Q Consensus 148 ~DIGGGStE 156 (519)
+=|||||+=
T Consensus 97 IavGGGsv~ 105 (358)
T PRK00002 97 IALGGGVIG 105 (358)
T ss_pred EEEcCcHHH
Confidence 999999874
No 217
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=21.04 E-value=1.5e+02 Score=24.98 Aligned_cols=55 Identities=11% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHhCCceEeeChHHHHHHHHhhhhc
Q 010059 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQ 136 (519)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~f~~~i~~~tG~~i~iIsg~eEA~l~~~gv~~ 136 (519)
|.+.+..+++.|| ++.+|+...... .+.|++. ++++.+|...++-+-|..+|+..
T Consensus 2 L~~~~~~l~~~gv---~lv~I~~g~~~~---~~~f~~~----~~~p~~ly~D~~~~lY~~lg~~~ 56 (115)
T PF13911_consen 2 LSRRKPELEAAGV---KLVVIGCGSPEG---IEKFCEL----TGFPFPLYVDPERKLYKALGLKR 56 (115)
T ss_pred hhHhHHHHHHcCC---eEEEEEcCCHHH---HHHHHhc----cCCCCcEEEeCcHHHHHHhCCcc
Confidence 4556666777788 478888665422 4556644 99999999999999999998873
No 218
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=20.81 E-value=3.3e+02 Score=29.71 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=36.4
Q ss_pred eEEEEEecccceeeeEEEEeCCCCEEEEEeeeee---eeccCCCCcCCCCCHHHHHHHHHHHH
Q 010059 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQP---VILGRDLSSSCSISTQSQARSVESLL 73 (519)
Q Consensus 14 ~~AvIDIGSNsirL~I~~~~~~~~~~~i~~~k~~---vrLg~~~~~~g~ls~e~i~~~~~~L~ 73 (519)
..-+||||+-|+-+.+++ ++.+ ++...-+ |||-+..+.++..+++.++++.+.+.
T Consensus 133 ~~lviDIGGGStEl~~~~---~~~~--~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 190 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT---GAQA--TSLFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAR 190 (496)
T ss_pred CEEEEEecCCeeeEEEec---CCce--eeeeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 368999999999999984 2333 3333333 56666667777778776666555544
No 219
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=20.41 E-value=1e+02 Score=31.67 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.8
Q ss_pred CcchHHHHHHHHHhhhhcc
Q 010059 395 EDKDLEYLEAACLLHNIGH 413 (519)
Q Consensus 395 ~~~~~~lL~~Aa~LhdiG~ 413 (519)
.+.++.-.=+||+|||+|+
T Consensus 100 ~~~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 100 EPAWRYAVFYAALLHDLGK 118 (327)
T ss_pred HhhhHHHHHHHHHHhccCc
Confidence 3456777889999999999
Done!