BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010060
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1
PE=1 SV=1
Length = 1282
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/387 (55%), Positives = 284/387 (73%), Gaps = 15/387 (3%)
Query: 30 KKQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDRSYGEPPPFVVVVQGPPQVGKSL 89
+K+NP+AFA S+V+ R R + + ++ HIP +DR+ EPPP VVVV GPP+VGKS
Sbjct: 38 RKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKST 97
Query: 90 LIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGS 149
LI+ LI+++T+ + E+RGP+TIVSGK+RRL +EC DIN MID AK+ADL L+LID S
Sbjct: 98 LIQCLIRNFTRQKLTEIRGPVTIVSGKKRRLTIIECGCDINMMIDLAKVADLVLMLIDAS 157
Query: 150 YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLF 209
+GFEMETFEFLN+ Q HG P++MGVLTHLD FK K+L+KTK+RLKHRFWTE+Y GAKLF
Sbjct: 158 FGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLF 217
Query: 210 YLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCD 269
YLSG++HG+Y +EI NL RFI+VMKF PL+W+TSHPY+L DR ED+T PE +R N KCD
Sbjct: 218 YLSGMVHGEYQNQEIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCD 277
Query: 270 RNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPLPSAAKKKGLRDKEKLFYA 329
R V++YGYLRG +LK ++H+ GVGD++++ ++ L DPC LP KK+ L +KEKL YA
Sbjct: 278 RKVSLYGYLRGAHLKNKSQIHMPGVGDFAVSDISFLPDPCALPEQQKKRCLNEKEKLVYA 337
Query: 330 PMSGLGDLLYDKDAVYININDHFVQFSKVDDENGKTNHKGKDQDVGETLVKSLQNTKYSI 389
P+SG+G +LYDKDAVY+++ V DE G T+ LV+SL +T +I
Sbjct: 338 PLSGVGGVLYDKDAVYVDLGGSHV----FQDEVGPTHE----------LVQSLISTHSTI 383
Query: 390 DEKLENSFISLFS-RKPNVSSDATNNA 415
D K+ +S ++LFS KP S D N
Sbjct: 384 DAKMASSRVTLFSDSKPLGSEDIDNQG 410
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/531 (43%), Positives = 314/531 (59%), Gaps = 75/531 (14%)
Query: 1 MEQPHKAHRTRKSGSSTKKKSKSDKNKQDKKQNPRAFAFTSSVKAKRLQSRAVEKEQRRL 60
MEQ +K HR K ++ KKK + + N +AFA + K R R+ + +R+L
Sbjct: 1 MEQSNKQHRKAKEKNTAKKKLHT------QGHNAKAFAVAAPGKMARTMQRSSDVNERKL 54
Query: 61 HIPTIDRS-YGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRR 119
H+P +DR+ +PPPF+V V GPP GK+ LI+SL++ TK + +++GPIT+VSGK RR
Sbjct: 55 HVPMVDRTPEDDPPPFIVAVVGPPGTGKTTLIRSLVRRMTKSTLNDIQGPITVVSGKHRR 114
Query: 120 LQFVECP-NDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHL 178
L F+ECP +D+N MID AKIADL LLLIDG++GFEMET EFLN+ Q+HG+PRV+GV THL
Sbjct: 115 LTFLECPADDLNAMIDIAKIADLVLLLIDGNFGFEMETMEFLNIAQHHGMPRVLGVATHL 174
Query: 179 DKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPP 238
D FK LR +K+RLKHRFWTE+Y GAKLFYLSG+I+G+Y REI NL+RFISVMKF P
Sbjct: 175 DLFKSQSTLRASKKRLKHRFWTEVYQGAKLFYLSGVINGRYPDREILNLSRFISVMKFRP 234
Query: 239 LSWRTSHPYVLVDRFEDVTPPERVRMNN-KCDRNVTIYGYLRGCNLKK--GIKVHIAGVG 295
L WR HPY+L DRF D+T PE + + DR V IYGYL G L G +VHIAGVG
Sbjct: 235 LKWRNEHPYMLADRFTDLTHPELIETQGLQIDRKVAIYGYLHGTPLPSAPGTRVHIAGVG 294
Query: 296 DYSLAGVTGLADPCPLP----------------------------SAAKKKGLRDKEKLF 327
D+S+A + L DPCP P + ++K L DK+KL
Sbjct: 295 DFSVAQIEKLPDPCPTPFYQQKLDDFEREKMKEEAKANGEITTASTTRRRKRLDDKDKLI 354
Query: 328 YAPMSGLGDLLYDKDAVYININDHFVQFSKVDDENGKTNHK-----GKDQDVGETLVKSL 382
YAPMS +G +L DKDAVYI+I GK N + G+++ GE L+ L
Sbjct: 355 YAPMSDVGGVLMDKDAVYIDI--------------GKKNEEPSFVPGQERGEGEKLMTGL 400
Query: 383 QNTKYSIDEKLENSFISLFSRKPNVSSDATNNAKDTDDDTEYIHDKQYQTGEGIANG--- 439
Q+ + SI EK + + LFS + A + D + E I D EG + G
Sbjct: 401 QSVEQSIAEKFDGVGLQLFSNGTELHEVADHEGMDVESGEESIED-----DEGKSKGRTS 455
Query: 440 ------LGESQRAEDMDGSESSDEETDAKNCETIKSGDNEDKLVEHVEFND 484
G+ + ED D +E N + ++ D+E ++VE ++FN+
Sbjct: 456 LRKPRIYGKPVQEEDADIDNLPSDEEPYTNDDDVQ--DSEPRMVE-IDFNN 503
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/486 (45%), Positives = 299/486 (61%), Gaps = 24/486 (4%)
Query: 6 KAHRTRKSGSSTKKKSKSDKNKQDKKQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTI 65
K H + SG +KK + NP+AFA S+ + R R + Q++LH+P +
Sbjct: 5 KGHYAKHSGPKAEKKKLKKVSDGSASNNPKAFAVASAGRMARQAMRTADISQKKLHVPMV 64
Query: 66 DRSYGE-PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVE 124
DR+ E PPP +V V GPP GKS LIKSL++ Y+K+ + ++ GPIT+V+GK+RR+ F+E
Sbjct: 65 DRTPDEAPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLE 124
Query: 125 CPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV 184
CPND++ MID AKIADL LLLID ++GFEMET EFLN++ HG+PR+MGVLTHLD FK
Sbjct: 125 CPNDLSSMIDVAKIADLVLLLIDANFGFEMETMEFLNILAPHGMPRIMGVLTHLDLFKKT 184
Query: 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTS 244
LR+ K+RLKHRFWTE+Y GAKLFYLSG+++G+Y REI NL+RFISVMKF PL WR
Sbjct: 185 STLREAKKRLKHRFWTELYQGAKLFYLSGVLNGRYPDREILNLSRFISVMKFRPLRWRNQ 244
Query: 245 HPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNL-KKGIKVHIAGVGDYSLAGVT 303
HPY+L DR ED+T P + N K R +T+YGYL G NL K VHI GVGD+ + V+
Sbjct: 245 HPYLLADRMEDLTLPVDIEQNPKVGRKITLYGYLHGTNLPKHDASVHIPGVGDFVTSDVS 304
Query: 304 GLADPCPLPSAAK--KKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHFVQFSKVDDE 361
L DPCP P A K ++ L +K+KL Y PM+ +G +L+DKD VYI + FSK DE
Sbjct: 305 SLEDPCPPPDADKVRRRRLSEKQKLIYGPMADIGGILFDKDRVYIEVPTS--NFSK--DE 360
Query: 362 NGKTNHKGKDQDVGETLVKSLQNTKYSIDEKLENSFISLFSRKPNVSSDATNNAKDTDDD 421
N + GE +V LQ + + NS + LFS +SDA + +
Sbjct: 361 NSEAG-------FGERMVMQLQEAQQPLGVD-GNSGLQLFS-----NSDAIDTVDRESSE 407
Query: 422 TEYIHDKQYQTGEGIANG--LGESQRAEDMDGSESSDEETDAKNCETIKSGDNEDKL-VE 478
+ + K + G+ N + E + A D S+DE D I + +NED+ E
Sbjct: 408 IDNVGRKTRRQPTGLINQELIKEDEGAFDDSDVNSADENEDVDFTGKIGAINNEDESDNE 467
Query: 479 HVEFND 484
V F D
Sbjct: 468 EVAFAD 473
>sp|Q5VTM2|AGAP9_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9
OS=Homo sapiens GN=AGAP9 PE=2 SV=2
Length = 703
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 74/89 (83%)
Query: 115 GKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGV 174
GK+RRL +EC DIN MID AK+ADL L+LID S+GFEME FEFLN+ Q HG P+++GV
Sbjct: 18 GKKRRLTIIECGCDINMMIDLAKVADLVLMLIDASFGFEMEMFEFLNICQAHGFPKILGV 77
Query: 175 LTHLDKFKDVKKLRKTKQRLKHRFWTEIY 203
LTHLD FK K+L+KTK+RLKHRFWTE+Y
Sbjct: 78 LTHLDSFKHNKQLKKTKKRLKHRFWTEVY 106
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1
PE=2 SV=1
Length = 815
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 145/326 (44%), Gaps = 46/326 (14%)
Query: 3 QPHKAHRTRKSGSSTK------------KKSKSDKNKQDKKQNPRAFAFTSSVKAKRLQS 50
+PHK+ R R G+ + KK+K D K D++ + + +R +
Sbjct: 20 KPHKSGRHRGRGAQDRENKGRVAAKILGKKNKKDLRKLDRRHK--------ANQIRRQRK 71
Query: 51 RAVEKEQRRLHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHY---TKHNVPEVR 107
AV E+R L + PP V+ + + K L SL+++ H +++
Sbjct: 72 DAVLAEKRSLG------TKDGPPHLVIAISLHARAVKDDLF-SLVQNNEGDILHVNDQIK 124
Query: 108 GPITIVSGK-QRRLQFVECP-NDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN 165
G + +V K ++R F++ +D+ ++D AK+AD L L+D G++ L+ +
Sbjct: 125 GLLALVCPKVKQRWCFIQANRDDLCSLLDLAKVADTLLFLLDPQEGWDSYGDYCLSCLFA 184
Query: 166 HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225
GLP + + ++ + +KK K++L D AKLF L +++E
Sbjct: 185 QGLPSYVLAVQGMN-YIPIKKRADIKKQLSKVIENRFTD-AKLFQLD-------TEQEAA 235
Query: 226 NLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKK 285
L R IS K L++R+ Y+L R D P + + + + GY+RG L
Sbjct: 236 VLIRQISTQKQRHLAFRSRRSYMLAQR-ADFQPTDESGLVG----TLKLSGYVRGQELNV 290
Query: 286 GIKVHIAGVGDYSLAGVTGLADPCPL 311
VHI G GD+ ++ + DP PL
Sbjct: 291 NRLVHIVGHGDFHMSQIDAPPDPYPL 316
>sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium
discoideum GN=tsr1 PE=3 SV=1
Length = 826
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 111 TIVSGKQRRLQFVECPN-DINGMIDCAKIADLALLLIDGSYG-FEMETFEFLNLMQNHGL 168
TI + R+ +EC + +I+ K++D+ L +ID + E +++ +
Sbjct: 141 TISLTSKVRMMLLECQTMAYDQVIEFCKLSDIILFVIDANQAKLNSEAERIFTIVKAQSV 200
Query: 169 PRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLA 228
P V+ ++ +LD+ +KK + K+ ++ F + K+ + + E +
Sbjct: 201 PTVIEIIQNLDQ-TPIKKRNELKKSIQSVFHFHFPNEPKVLPMD-------TNDECSQVL 252
Query: 229 RFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIK 288
R+I + + WR PY+L+++ P +V VTI G++RG NL
Sbjct: 253 RYIENIHVNEIIWRKVRPYMLIEK-SSYIPETKV---------VTIDGFIRGNNLSAKQI 302
Query: 289 VHIAGVGDYSLAGVTGLADP 308
+HI GD+ + + + DP
Sbjct: 303 IHIPDYGDFQIEKIELIDDP 322
>sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans
GN=tag-151 PE=3 SV=1
Length = 785
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 130/327 (39%), Gaps = 43/327 (13%)
Query: 1 MEQPHKAHRTRKSGSSTKKKSKSDKNKQDKKQNPRAFAFT----------SSVKAKRLQS 50
++P K H++ K + + + ++ ++ KQ R+ T + +K R Q
Sbjct: 11 FKKPSKPHKSWKGKRTKGEITSENRGREGVKQLTRSAHSTHRTISKDARRNQLKMARDQK 70
Query: 51 RAVEKEQRRLHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI 110
A E+RR P V VV + IK L + + P
Sbjct: 71 MADAMERRRT---------SNAPCLVTVVSLGVGARPTEFIKKLAT--CDETIIQTTSPS 119
Query: 111 TI---VSGKQRRLQFVECPND-INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNH 166
TI + + R+ F+ D ++G++D + +D+ L S + L +++ +
Sbjct: 120 TIDFAIPRFKSRVSFLTPDKDNVDGVLDAIRASDVLCFLWPMSAELSEWDEQLLTIIKAN 179
Query: 167 GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRN 226
GLP ++ V+ L + KK ++ ++ + +K + + S +
Sbjct: 180 GLPTIVSVVPGLGSIANHKKKEDVRKGIE-------FIISKWSMSNAGVMPADSVTDNLQ 232
Query: 227 LARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIY--GYLRGCNLK 284
L R ++ K PL+ + H Y+LV+ E ++K T+ GYLRG
Sbjct: 233 LLRILNETKKKPLTLQARHSYMLVENLE---------CSDKTGETCTLVAQGYLRGPEWN 283
Query: 285 KGIKVHIAGVGDYSLAGVTGLADPCPL 311
VH+ G GD+ ++ + DP PL
Sbjct: 284 ANNLVHLPGFGDFQISKIESTVDPHPL 310
>sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae
GN=tag-151 PE=3 SV=1
Length = 788
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 128 DINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187
+++ ++D + +D+ L S + L + + GLP ++ V+ L ++ KK
Sbjct: 141 NVDSVLDAIRASDVLCFLWPLSAELSEWDEQLLTICKAAGLPTIVSVVPGLGGIQNHKKK 200
Query: 188 RKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPY 247
++ ++ + +K + + S + L R ++ K PL+ + H Y
Sbjct: 201 EDVRKGIE-------FTISKWSMSNAGVMPADSVTDNLQLLRTLNETKKKPLTLQARHSY 253
Query: 248 VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLAD 307
+LV+ E PE + + GYLRG +H+ G GD+ ++ + AD
Sbjct: 254 MLVENLEATESPE-----DSSKITLKAQGYLRGPEWNANNLIHLPGFGDFQISKIETAAD 308
Query: 308 PCPLPSAAKK 317
P PL ++ K
Sbjct: 309 PHPLKTSPPK 318
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1
PE=2 SV=1
Length = 803
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 126 PNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF---K 182
P D++ ++D AK+AD L L+D G++ L+ + GLP + L F K
Sbjct: 140 PGDLHTLLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGLSGFPPKK 199
Query: 183 DVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWR 242
+ +K + ++ RF + KL L +++E L R ++ K L++R
Sbjct: 200 QIDARKKLSKMVEKRFPED-----KLLLLD-------TQQESGMLLRQLANQKQRHLAFR 247
Query: 243 TSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGV 302
Y L D P E + + I GY+RG L +HI G GD+ + +
Sbjct: 248 DRRAY-LFAHVADFVPSEESDLVG----TLKISGYVRGRTLNVNSLLHIVGHGDFQMNQI 302
Query: 303 TGLADPCPL 311
DP PL
Sbjct: 303 DAPVDPFPL 311
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1
PE=1 SV=1
Length = 804
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 22/190 (11%)
Query: 126 PNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPR----VMGVLTHLDKF 181
P D++ ++D AK+AD L L+D G++ L+ + GLP V G+ + L
Sbjct: 140 PGDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGI-SGLPLK 198
Query: 182 KDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSW 241
K + +K + ++ RF + KL L +++E L R ++ K L++
Sbjct: 199 KQIDTRKKLSKAVEKRFPHD-----KLLLLD-------TQQEAGMLLRQLANQKQQHLAF 246
Query: 242 RTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAG 301
R Y+ D P E N + I GY+RG L +HI G GD+ +
Sbjct: 247 RDRRAYLFAHAV-DFVPSE----ENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMKQ 301
Query: 302 VTGLADPCPL 311
+ DP PL
Sbjct: 302 IDAPGDPFPL 311
>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1
PE=2 SV=1
Length = 805
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 22/190 (11%)
Query: 126 PNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPR----VMGVLTHLDKF 181
P D++ ++D AK+AD L L+D G++ L+ + GLP V G+ + L
Sbjct: 140 PGDLHIVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGI-SGLPLK 198
Query: 182 KDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSW 241
K + +K + ++ RF + KL L +++E L R ++ K L++
Sbjct: 199 KQIDARKKLSKAVEKRFPHD-----KLLLLD-------TQQEAGMLLRQLANQKQQHLAF 246
Query: 242 RTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAG 301
R Y+ + V E N + I GY+RG L +HI G GD+ +
Sbjct: 247 RDRRAYLFARAVDFVASEE-----NNLVGTLKISGYVRGQTLNVNRLLHIVGHGDFQMKQ 301
Query: 302 VTGLADPCPL 311
+ DP PL
Sbjct: 302 IDAPGDPFPL 311
>sp|C5C9T1|IF2_MICLC Translation initiation factor IF-2 OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=infB PE=3 SV=1
Length = 930
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 26/156 (16%)
Query: 71 EPPPFVVVVQGPPQVGKSLLIKSL-------------IKHYTKHNVPEVRGPITIVSGKQ 117
EP P VV V G GK+ L+ ++ +H + VP G+Q
Sbjct: 421 EPRPAVVTVMGHVDHGKTRLLDAIRSSNVIEGEAGGITQHIGAYQVPVEH------EGEQ 474
Query: 118 RRLQFVECPN--DINGM-IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGV 174
RRL F++ P M AK+ D+A+L++ G +T E LN Q+ G+P V+ V
Sbjct: 475 RRLTFIDTPGHEAFTAMRARGAKVTDIAVLVVAADDGVMPQTVEALNHAQSAGVPIVVAV 534
Query: 175 LTHLDKFKDVKKLRKTKQRL-KHRFWTEIYDGAKLF 209
+D KD K + +L ++ E Y G +F
Sbjct: 535 -NKID--KDTAAPDKIRGQLTEYGLVPEEYGGDTMF 567
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 132 MIDCAKIADLALLLIDGSYGFEMETFE-FLNLMQNHGLPRVMGVLTHLDKFKDVKKLR-K 189
++DCAK+AD + + G + E E + ++ G+ +GV+++L + +K +
Sbjct: 148 ILDCAKVADFVVFGLSGVQEVDEEFGEQIIRALELQGIASYIGVISNLSAVHEKEKFQLD 207
Query: 190 TKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVL 249
KQ L+ F F ++ + N+ R + ++WR + YV+
Sbjct: 208 VKQSLESYF-------KHFFPSEERVYNLEKNSDALNVLRTLCQRLPRSINWRDNRGYVV 260
Query: 250 VDRFEDV-TPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADP 308
D + V T P+ ++ I G +RG VHI GD+ L + +++
Sbjct: 261 ADFVDFVETSPD--------SGDLVIEGTVRGIGFNANRLVHIPDFGDFQLNKIEKISE- 311
Query: 309 CPLPSAAKKKGLRDK 323
S+ K+K +++K
Sbjct: 312 ----SSQKRKIIKEK 322
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster
GN=CG7338 PE=1 SV=1
Length = 814
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 84/215 (39%), Gaps = 46/215 (21%)
Query: 117 QRRLQFVECP----NDINGMIDCAKIADLALLLIDGSYG----FEMETFEFLNLMQNHGL 168
++R FV P N++ + D K+ D LLL ++G F+ N+M G+
Sbjct: 131 KQRFAFVTPPVGRGNELIAL-DYLKVCDTTLLLTTAAFGDDEIFDRWGQRIFNMMSAQGI 189
Query: 169 PRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH--------GKYS 220
P + L L+ K R ++ + +++ K+ L G
Sbjct: 190 PTPVVALMDLESIN--PKRRPAAKQAAQKVISKLLPEEKIMQLDTASEALNVMRRIGGQK 247
Query: 221 KREIRNLAR----FISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYG 276
KR + N+A F V++F P S D +D+ + + G
Sbjct: 248 KRILHNVANRPHLFGDVVEFKPGS----------DPSDDLG-------------TLEVTG 284
Query: 277 YLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPL 311
+LRG +L VHI G+GD+ L+ V DP L
Sbjct: 285 FLRGQSLNVNGLVHIPGLGDFQLSQVVAPPDPYKL 319
>sp|A4FM34|IF2_SACEN Translation initiation factor IF-2 OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=infB PE=3 SV=1
Length = 1027
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 36/182 (19%)
Query: 54 EKEQRRLHIPTIDRSYGEP----------PPFVVVVQGPPQVGKSLLIKSLIK------- 96
E E R L + + D S+G+P PP VV V G GK+ L+ ++ K
Sbjct: 497 EDEDREL-LESFDISFGDPGSSDEELMSRPP-VVTVMGHVDHGKTRLLDTIRKANVQAGE 554
Query: 97 ------HYTKHNVPEVRGPITIVSGKQRRLQFVECPN--DINGM-IDCAKIADLALLLID 147
H + V IT + G +R + F++ P M AK D+A+L++
Sbjct: 555 AGGITQHIGAYQV------ITELEGNERPITFIDTPGHEAFTAMRARGAKSTDIAVLVVA 608
Query: 148 GSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAK 207
G +T E LN Q G+P V+ V + + K+R +Q ++ E Y G
Sbjct: 609 ADDGVMPQTVEALNHAQAAGVPIVVAVNKIDVEGANPAKVR--QQLTEYNLVAEEYGGET 666
Query: 208 LF 209
+F
Sbjct: 667 MF 668
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 60 LHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS 114
LH PT+ S+G PP +++ GPP GK++L++ ++ + + +V + GP +IVS
Sbjct: 265 LHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLR-VVANTSNAHVLTINGP-SIVS 317
>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1
Length = 783
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 111 TIVSGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLM----QNH 166
T + ++ L F+ + +ID K++D + ++ E EF L+ Q
Sbjct: 124 TTIDRFKQNLLFLLPKREFYSLIDACKVSDYVIFVLSAV----QEVDEFGELIVRTTQGQ 179
Query: 167 GLPRVMGV---LTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223
G+ V+ + L+ +D K +++K+ Q + F++ D ++F ++
Sbjct: 180 GISSVLSMVHDLSEVDSLKTRNEVKKSLQSFMNFFFS---DQERVF-------AADVSQD 229
Query: 224 IRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNL 283
N+ R + + WR S Y+L + + +N N+ + G +RG L
Sbjct: 230 ALNVMRALCTSHPRGIHWRDSRSYLL---------SQEISYSNG---NLLVRGIVRGKGL 277
Query: 284 KKGIKVHIAGVGDYSL 299
+HI G GD+++
Sbjct: 278 DPNRLIHIQGFGDFAI 293
>sp|A2BJZ8|IF2P_HYPBU Probable translation initiation factor IF-2 OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=infB PE=3 SV=1
Length = 612
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 22/121 (18%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV------------- 184
+AD A+L++D + GF+ +T+E + +++ +P V+ +DK
Sbjct: 101 VADFAILVVDINEGFQPQTYESIEILRQRRVPFVVAA-NKIDKIPGWRANPDTPFLISLQ 159
Query: 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTS 244
K+ ++ ++ L+ R W I +KL+ L G ++ + IR+ R ++V+ P+S +T
Sbjct: 160 KQAQRVREELERRLWDNII--SKLYEL-GFQADRFDR--IRDFTRTVAVI---PISAKTG 211
Query: 245 H 245
Sbjct: 212 E 212
>sp|B6YWH3|IF2P_THEON Probable translation initiation factor IF-2 OS=Thermococcus
onnurineus (strain NA1) GN=infB PE=3 SV=1
Length = 597
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK---------KLR 188
+ADLA+L++D + GF+ +T E + +++ + P ++ +D+ K K ++
Sbjct: 94 LADLAVLVVDINEGFQPQTIESIEILRKNRTPFIVAA-NKIDRIKGWKIEKDEPFLVNIK 152
Query: 189 KTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLS 240
K QR + T++++ FY G ++ + ++N R ++++ P+S
Sbjct: 153 KQDQRAQQELETKLWELIGKFYEMGFQANRFDR--VQNFTRELAIV---PIS 199
>sp|A8MBV9|IF2P_CALMQ Probable translation initiation factor IF-2 OS=Caldivirga
maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM
10307 / IC-167) GN=infB PE=3 SV=1
Length = 594
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMG 173
+ADLA+L+ID + GFE +T+E L L+++ +P V+
Sbjct: 97 VADLAILVIDLTRGFEEQTYESLILLKSRNIPFVVA 132
>sp|A9WPV8|IF2_RENSM Translation initiation factor IF-2 OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=infB PE=3 SV=1
Length = 956
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 74 PFVVVVQGPPQVGKSLLIKSL-------------IKHYTKHNVPEVRGPITIVSGKQRRL 120
P VV V G GK+ L+ ++ +H + V V G+ R++
Sbjct: 451 PPVVTVMGHVDHGKTRLLDAIRNSDVVAGEHGGITQHIGAYQVNHVH------EGEVRKI 504
Query: 121 QFVECPN--DINGM-IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTH 177
F++ P M AK+ D+A+L++ G +T E LN Q G+P V+ V
Sbjct: 505 TFIDTPGHEAFTAMRARGAKVTDIAILVVAADDGVMPQTVEALNHAQAAGVPIVVAV-NK 563
Query: 178 LDK-FKDVKKLRKTKQRLKHRFWTEIYDGAKLFY 210
+DK + +K+R Q ++ E Y G +F
Sbjct: 564 IDKEGANPEKIR--GQLTEYGLVPEEYGGETMFV 595
>sp|Q8EX18|EFTU_MYCPE Elongation factor Tu OS=Mycoplasma penetrans (strain HF-2) GN=tuf
PE=3 SV=1
Length = 394
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 19/198 (9%)
Query: 116 KQRRLQFVECPND---INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM 172
+ R V+CP + MI A D A+L++ S G +T E + L + G+P+++
Sbjct: 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMPQTREHILLARQVGVPKMV 132
Query: 173 GVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG----LIHGKYSKREIRNLA 228
L D D + + ++ + +DG + G + G + E +
Sbjct: 133 VFLNKCDMVSDAEMQDLVEMEVRELLSSYGFDGDNTPVIRGSALKALEGD-ATWEAKIDE 191
Query: 229 RFISVMKFPPLSWR-TSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGI 287
SV + P R T P++L EDV R + G + LK
Sbjct: 192 LMASVDSYIPTPTRDTDKPFLLA--VEDVM--------TITGRGTVVTGRVERGTLKLND 241
Query: 288 KVHIAGVGDYSLAGVTGL 305
+V I G+ D A VTG+
Sbjct: 242 EVEIVGIHDTRKAVVTGM 259
>sp|Q12Z93|IF2P_METBU Probable translation initiation factor IF-2 OS=Methanococcoides
burtonii (strain DSM 6242) GN=infB PE=3 SV=1
Length = 591
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181
+ADLA++++D + GF+ +T E LN++Q H P V+ V +DK
Sbjct: 95 LADLAVVIVDINEGFKPQTIESLNILQQHKTPFVV-VANKIDKI 137
>sp|O60841|IF2P_HUMAN Eukaryotic translation initiation factor 5B OS=Homo sapiens
GN=EIF5B PE=1 SV=4
Length = 1220
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK--------- 186
+ + D+A+L++D +G E +T E +NL+++ P ++ L +D+ D KK
Sbjct: 717 SSLCDIAILVVDIMHGLEPQTIESINLLKSKKCPFIVA-LNKIDRLYDWKKSPDSDVAAT 775
Query: 187 LRKTKQRLKHRF 198
L+K K+ K F
Sbjct: 776 LKKQKKNTKDEF 787
>sp|A0B8Q6|IF2P_METTP Probable translation initiation factor IF-2 OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=infB PE=3 SV=1
Length = 602
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGV--LTHLDKFKDV------KKLRK 189
+ADLA+L++D + GF+ +T E +N+++ P V+ + + ++ V K L
Sbjct: 105 LADLAILIVDINEGFQPQTIESINILKRFKTPFVVAANKIDRIPGWRPVENAPMEKSLAG 164
Query: 190 TKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSH 245
+R+ T+IY+ Y G +Y + +A F + P+S T
Sbjct: 165 QTERVVETLETKIYELVGELYKYGFDSNRYDR-----IADFTKTVGIIPVSAITGE 215
>sp|C6A1V3|IF2P_THESM Probable translation initiation factor IF-2 OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=infB PE=3 SV=1
Length = 597
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK---------KLR 188
+ADLA+L+ID + GF+ +T E + +++ + P V+ +D+ K K ++
Sbjct: 94 LADLAILIIDVNEGFQPQTLESIEILRKYKTPFVVAA-NKIDRIKGWKVVENEPFLVNIK 152
Query: 189 KTKQRLKHRFWTEIYDGAKLFYLSGL 214
K QR + T++++ FY G
Sbjct: 153 KQDQRAQQDLETKLWELIGKFYELGF 178
>sp|Q2NGM6|IF2P_METST Probable translation initiation factor IF-2 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=infB PE=3 SV=1
Length = 613
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTK-----Q 192
+ADLA+L++D + GF+ +T+E LN++++ P V+ +K + TK +
Sbjct: 93 LADLAILIMDVTEGFKPQTYEALNILKSSKTPFVVAA----NKIDKIPGWNSTKGECFSK 148
Query: 193 RLKHRFWTEIYD-GAKLFYLSGLIHGK-YSKREIRNLARFISVMKFPPLSWRT 243
++++ ++D K++ + G +H + + ++ F S + P+S T
Sbjct: 149 AVQNQHKNVVFDLDQKIYEIVGTLHEEGFESERFDRVSNFASQITIVPISAYT 201
>sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B OS=Mus musculus
GN=Eif5b PE=1 SV=2
Length = 1216
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK--------- 186
+ + D+A+L++D +G E +T E +N++++ P ++ L +D+ D KK
Sbjct: 713 SSLCDIAILVVDIMHGLEPQTIESINILKSKKCPFIVA-LNKIDRLYDWKKSPDSDVAVT 771
Query: 187 LRKTKQRLKHRF 198
L+K K+ K F
Sbjct: 772 LKKQKKNTKDEF 783
>sp|B3PMU1|EFTU_MYCA5 Elongation factor Tu OS=Mycoplasma arthritidis (strain 158L3-1)
GN=tuf PE=3 SV=1
Length = 397
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 116 KQRRLQFVECPND---INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM 172
++R V+CP + MI A D A+L++ + G +T E + L + G+P+++
Sbjct: 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLAKQVGVPKIV 132
Query: 173 GVLTHLDKFKD 183
L +D FKD
Sbjct: 133 VFLNKIDMFKD 143
>sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B OS=Rattus norvegicus
GN=Eif5b PE=1 SV=1
Length = 1216
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK--------- 186
+ + D+A+L++D +G E +T E +N++++ P ++ L +D+ D KK
Sbjct: 713 SSLCDIAILVVDIMHGLEPQTIESINILKSKKCPFIVA-LNKIDRLYDWKKSPDSDVAVT 771
Query: 187 LRKTKQRLKHRF 198
L+K K+ K F
Sbjct: 772 LKKQKKNTKDEF 783
>sp|P22679|EFTU_MYCHP Elongation factor Tu OS=Mycoplasma hominis (strain ATCC 23114 /
NBRC 14850 / NCTC 10111 / PG21) GN=tuf PE=1 SV=1
Length = 397
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 116 KQRRLQFVECPND---INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM 172
++R V+CP + MI A D A+L++ + G +T E + L + G+P+++
Sbjct: 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPKIV 132
Query: 173 GVLTHLDKFKD 183
L +D FKD
Sbjct: 133 VFLNKIDMFKD 143
>sp|Q9UZK7|IF2P_PYRAB Probable translation initiation factor IF-2 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=infB PE=3 SV=1
Length = 992
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD---------VKKLR 188
+ADLA+L++D + GF+ +T E + +++ + P V+ +D+ K + ++
Sbjct: 489 LADLAVLVVDINEGFQPQTIESIEILRKYRTPFVVAA-NKIDRIKGWVIEEDEPFLMNIK 547
Query: 189 KTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLS 240
K QR T++++ FY G ++ + ++N R ++++ P+S
Sbjct: 548 KQDQRAVQELETKLWELIGKFYEFGFQANRFDR--VQNFTRELAIV---PIS 594
>sp|Q9R0G8|NRK_MOUSE Nik-related protein kinase OS=Mus musculus GN=Nrk PE=1 SV=2
Length = 1455
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 74 PFVVVVQGPPQVGKSL-LIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDIN 130
P +V V+ PPQV K+ ++KSL K PEV+ P+ Q E P D++
Sbjct: 448 PVLVQVEAPPQVSKAAQMLKSLPTQDNKATSPEVQAPVAEGQQAQHEALETEQPKDLD 505
>sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1
SV=3
Length = 893
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 15 SSTKKKSKSDKNKQDKKQNPRAFAFTSSVKAKRLQSRAV-EKEQRRLHIPTIDRSYGEPP 73
SST + + ++ +K K+Q+ + + Q +A+ E + L P + +SYG P
Sbjct: 327 SSTTRVNFTEIDKNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPA 386
Query: 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI 112
P V++ GPP GK+++ +++ + V + GP I
Sbjct: 387 PRGVLLYGPPGTGKTMIARAVANEVGAY-VSVINGPEII 424
>sp|Q0VA52|SPA5L_XENTR Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus
tropicalis GN=spata5l1 PE=2 SV=1
Length = 593
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 60 LHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV----PEVRG 108
LH P G P P V++ GPP VGK+LL+K++ + + + P + G
Sbjct: 211 LHYPETMHKLGLPCPKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLSGPAIHG 263
>sp|Q4FLK5|EFTU_PELUB Elongation factor Tu OS=Pelagibacter ubique (strain HTCC1062)
GN=tuf PE=3 SV=1
Length = 396
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 116 KQRRLQFVECPND---INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM 172
++R V+CP + MI A D A+L+++ + G +T E + L + G+P ++
Sbjct: 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLGRQVGIPAIV 132
Query: 173 GVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213
L +D+ D + ++ ++ + Y G K + G
Sbjct: 133 VYLNKVDQVDDKDMIELVEEEIRELLTSYKYPGDKTPIVKG 173
>sp|A7IAP7|IF2P_METB6 Probable translation initiation factor IF-2 OS=Methanoregula boonei
(strain 6A8) GN=infB PE=3 SV=1
Length = 591
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181
+AD+A+L++D S GF+ +T E L +++N P V+ T +D+
Sbjct: 93 LADMAILVVDISQGFQPQTIEALQILRNCKTPFVIAA-TKVDRI 135
>sp|A1RXH6|IF2P_THEPD Probable translation initiation factor IF-2 OS=Thermofilum pendens
(strain Hrk 5) GN=infB PE=3 SV=1
Length = 601
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKT 190
IAD+A+L++D G E +TFE +++++ +P ++ V +DK K T
Sbjct: 100 IADIAILVVDVLRGLEQQTFESIDILRERKVPFIVAV-NKIDKIPGWKSFPNT 151
>sp|Q466D5|IF2P_METBF Probable translation initiation factor IF-2 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=infB PE=3 SV=1
Length = 591
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF------KDVK---KLR 188
+ADLA++++D + GF+ +T+E L +++ P V+ V +D+ KD+ +
Sbjct: 95 LADLAIVVVDINEGFKPQTYESLQILKRFKTPFVV-VANKIDRIGGWVSQKDLPFAVTFK 153
Query: 189 KTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSH 245
K + ++ R T++Y+ Y G +Y + + N + + V+ P+S T
Sbjct: 154 KQSEDVQARLETKLYEVIGELYNQGFAAERYDR--VTNFQKTLGVV---PVSAMTGE 205
>sp|P63345|ARC_MYCTU Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa
PE=1 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|C6DPU6|ARC_MYCTK Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
KZN 1435 / MDR) GN=mpa PE=3 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|A5WP89|ARC_MYCTF Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
F11) GN=mpa PE=3 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|A5U4E1|ARC_MYCTA Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=mpa PE=3 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|C1AQ31|ARC_MYCBT Proteasome-associated ATPase OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=mpa PE=3 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|A1KKF8|ARC_MYCBP Proteasome-associated ATPase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=mpa PE=3 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|P63346|ARC_MYCBO Proteasome-associated ATPase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=mpa PE=3 SV=1
Length = 609
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 50 SRAVEKEQRRLHIPTID----RSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE 105
SR +E+ + + +P + R Y PP V++ GPP GK+L+ K++ K + E
Sbjct: 258 SRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAK-KMAE 316
Query: 106 VRG 108
VRG
Sbjct: 317 VRG 319
>sp|Q96M32|KAD7_HUMAN Adenylate kinase 7 OS=Homo sapiens GN=AK7 PE=1 SV=3
Length = 723
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND 128
P + + GPP VGKS + K L +Y H++ +++ ++S +L+ + PND
Sbjct: 367 PIKICILGPPAVGKSSIAKELANYYKLHHI-QLKD---VISEAIAKLEAIVAPND 417
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 26 NKQDKKQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDRSYGEPPPFVVVVQGPPQV 85
N++D++ N + ++ ++ E + L P + ++ G PP V++ GPP
Sbjct: 200 NREDEENNMNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGT 259
Query: 86 GKSLLIKSLIKH----YTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAKIADL 141
GK+L+ +++ + N PEV + S R F E + +I +I +
Sbjct: 260 GKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSI 319
Query: 142 A 142
A
Sbjct: 320 A 320
>sp|P84398|VHS_EHV1V Virion host shutoff protein OS=Equine herpesvirus 1 (strain V592)
GN=19 PE=3 SV=1
Length = 497
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 31 KQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDR--SYGEPPPFVVVVQGPPQVGKS 88
++NP + K + R+ E R LH+ R E P +V PP+
Sbjct: 353 RENPAV----ETCKRRTRPRRSAEASGRILHLKYTSRYPPIMESAPRALVRMAPPKTRHE 408
Query: 89 LLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAK 137
+L + +KH PE RG ++I+ RRL + P++ + + D K
Sbjct: 409 VLERKFVKHVVSMLTPERRGSLSIM----RRLPITQEPSNFSLVHDTLK 453
>sp|P28957|VHS_EHV1B Virion host shutoff protein OS=Equine herpesvirus 1 (strain Ab4p)
GN=19 PE=3 SV=1
Length = 497
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 31 KQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDR--SYGEPPPFVVVVQGPPQVGKS 88
++NP + K + R+ E R LH+ R E P +V PP+
Sbjct: 353 RENPAV----ETCKRRTRPRRSAEASGRILHLKYTSRYPPIMESAPRALVRMAPPKTRHE 408
Query: 89 LLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAK 137
+L + +KH PE RG ++I+ RRL + P++ + + D K
Sbjct: 409 VLERKFVKHVVSMLTPERRGSLSIM----RRLPITQEPSNFSLVHDTLK 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,572,873
Number of Sequences: 539616
Number of extensions: 9161182
Number of successful extensions: 37399
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 36765
Number of HSP's gapped (non-prelim): 810
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)