Query 010060
Match_columns 519
No_of_seqs 397 out of 2991
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 20:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 1.5E-87 3.3E-92 704.3 30.1 392 1-411 1-396 (1077)
2 cd01882 BMS1 Bms1. Bms1 is an 100.0 7.3E-37 1.6E-41 300.7 25.5 225 36-260 1-225 (225)
3 KOG1980 Uncharacterized conser 100.0 2E-28 4.4E-33 261.7 15.5 286 2-313 10-306 (754)
4 COG1159 Era GTPase [General fu 99.9 1.2E-26 2.6E-31 233.3 15.8 207 74-304 6-257 (298)
5 smart00785 AARP2CN AARP2CN (NU 99.9 5.8E-24 1.3E-28 178.4 9.6 83 223-309 1-83 (83)
6 PF08142 AARP2CN: AARP2CN (NUC 99.9 1.8E-23 3.9E-28 176.3 9.6 85 223-309 1-85 (85)
7 CHL00071 tufA elongation facto 99.9 2.7E-21 5.9E-26 206.0 27.8 224 71-309 9-276 (409)
8 PTZ00327 eukaryotic translatio 99.9 1.8E-21 3.8E-26 209.8 25.6 230 71-310 31-318 (460)
9 PRK12735 elongation factor Tu; 99.9 4.1E-21 8.8E-26 203.9 27.1 225 70-309 8-268 (396)
10 PRK12736 elongation factor Tu; 99.9 6.9E-21 1.5E-25 202.0 27.7 224 71-309 9-266 (394)
11 PRK10512 selenocysteinyl-tRNA- 99.9 4E-21 8.7E-26 213.9 26.8 218 75-310 1-229 (614)
12 PLN03126 Elongation factor Tu; 99.9 9.4E-21 2E-25 205.3 28.4 224 71-309 78-345 (478)
13 COG5177 Uncharacterized conser 99.9 2.4E-22 5.1E-27 210.6 15.0 282 4-307 11-302 (769)
14 TIGR00485 EF-Tu translation el 99.9 9.4E-21 2E-25 200.9 25.8 224 71-309 9-266 (394)
15 PLN03127 Elongation factor Tu; 99.9 2.2E-20 4.7E-25 201.2 27.2 226 71-309 58-319 (447)
16 PRK00049 elongation factor Tu; 99.9 2.3E-20 4.9E-25 198.2 26.9 225 71-310 9-269 (396)
17 TIGR00436 era GTP-binding prot 99.9 1.3E-21 2.8E-26 197.2 15.8 209 76-304 2-249 (270)
18 TIGR00475 selB selenocysteine- 99.9 2.5E-20 5.5E-25 206.6 26.3 219 75-310 1-231 (581)
19 PRK15494 era GTPase Era; Provi 99.9 3.8E-21 8.2E-26 200.3 16.2 213 72-304 50-301 (339)
20 TIGR03680 eif2g_arch translati 99.9 9.1E-20 2E-24 194.2 26.7 229 72-310 2-280 (406)
21 PTZ00141 elongation factor 1- 99.9 1E-19 2.2E-24 196.0 26.4 224 71-310 4-288 (446)
22 PRK00089 era GTPase Era; Revie 99.9 1E-20 2.2E-25 192.0 17.1 211 74-304 5-254 (292)
23 PRK12317 elongation factor 1-a 99.9 2.1E-19 4.6E-24 192.1 27.4 223 71-310 3-280 (425)
24 PRK04000 translation initiatio 99.8 2.7E-19 5.8E-24 190.9 26.1 230 71-310 6-285 (411)
25 COG5256 TEF1 Translation elong 99.8 3.5E-19 7.5E-24 185.8 23.8 223 71-310 4-286 (428)
26 TIGR02034 CysN sulfate adenyly 99.8 1.3E-18 2.7E-23 185.5 25.4 219 75-309 1-271 (406)
27 KOG1423 Ras-like GTPase ERA [C 99.8 5.7E-20 1.2E-24 184.9 13.5 217 71-304 69-356 (379)
28 PRK05124 cysN sulfate adenylyl 99.8 2.4E-18 5.1E-23 186.7 26.9 223 72-310 25-300 (474)
29 PLN00043 elongation factor 1-a 99.8 1.9E-18 4.1E-23 186.2 25.3 224 71-310 4-288 (447)
30 PF00009 GTP_EFTU: Elongation 99.8 5.5E-19 1.2E-23 168.1 18.1 155 74-236 3-187 (188)
31 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.4E-19 2E-23 168.9 19.6 162 73-235 1-192 (195)
32 TIGR00483 EF-1_alpha translati 99.8 4.1E-18 8.9E-23 182.4 26.6 224 71-310 4-282 (426)
33 PRK05506 bifunctional sulfate 99.8 3.8E-18 8.3E-23 191.1 26.7 224 71-310 21-296 (632)
34 COG5257 GCD11 Translation init 99.8 6E-19 1.3E-23 178.4 17.6 214 72-294 8-258 (415)
35 KOG0461 Selenocysteine-specifi 99.8 3E-18 6.6E-23 174.4 22.2 234 74-339 7-269 (522)
36 COG0050 TufB GTPases - transla 99.8 4.8E-18 1E-22 170.2 22.6 220 71-303 9-257 (394)
37 TIGR00491 aIF-2 translation in 99.8 9.6E-18 2.1E-22 185.8 26.3 224 73-313 3-287 (590)
38 COG2895 CysN GTPases - Sulfate 99.8 2E-18 4.4E-23 176.5 19.2 249 72-353 4-303 (431)
39 KOG0458 Elongation factor 1 al 99.8 2.2E-17 4.7E-22 177.7 22.3 223 72-310 175-460 (603)
40 PRK04004 translation initiatio 99.8 1.3E-16 2.8E-21 177.1 26.0 222 72-313 4-289 (586)
41 cd01888 eIF2_gamma eIF2-gamma 99.8 3.8E-17 8.1E-22 157.9 18.4 158 75-239 1-202 (203)
42 KOG0460 Mitochondrial translat 99.8 6.2E-17 1.3E-21 164.8 20.2 222 70-304 50-305 (449)
43 TIGR01394 TypA_BipA GTP-bindin 99.7 1.6E-16 3.5E-21 176.5 25.0 215 75-305 2-253 (594)
44 cd04171 SelB SelB subfamily. 99.7 1E-16 2.3E-21 145.9 17.6 151 76-232 2-162 (164)
45 COG3276 SelB Selenocysteine-sp 99.7 1.5E-16 3.3E-21 167.2 21.1 214 75-310 1-226 (447)
46 COG1160 Predicted GTPases [Gen 99.7 3.8E-17 8.3E-22 172.8 16.6 140 73-216 177-336 (444)
47 TIGR00487 IF-2 translation ini 99.7 5.9E-16 1.3E-20 171.7 25.7 213 71-303 84-307 (587)
48 COG0532 InfB Translation initi 99.7 3.6E-16 7.7E-21 167.8 22.9 219 72-313 3-238 (509)
49 cd04166 CysN_ATPS CysN_ATPS su 99.7 8.6E-17 1.9E-21 156.0 15.8 142 76-217 1-180 (208)
50 TIGR01393 lepA GTP-binding pro 99.7 6.2E-16 1.3E-20 172.1 24.7 207 74-305 3-239 (595)
51 PRK05433 GTP-binding protein L 99.7 9.5E-16 2.1E-20 170.7 26.1 208 73-305 6-243 (600)
52 cd01889 SelB_euk SelB subfamil 99.7 1.7E-16 3.7E-21 151.2 16.9 159 75-240 1-190 (192)
53 CHL00189 infB translation init 99.7 5.6E-16 1.2E-20 174.9 23.4 204 72-293 242-458 (742)
54 KOG0462 Elongation factor-type 99.7 2.1E-16 4.5E-21 168.9 17.1 215 74-313 60-303 (650)
55 KOG1144 Translation initiation 99.7 1.1E-16 2.3E-21 174.9 14.6 257 58-333 459-775 (1064)
56 PRK05306 infB translation init 99.7 1.5E-15 3.4E-20 172.6 24.7 201 71-291 287-498 (787)
57 PRK10218 GTP-binding protein; 99.7 2.6E-15 5.7E-20 167.0 25.0 215 74-303 5-255 (607)
58 cd01883 EF1_alpha Eukaryotic e 99.7 7.9E-16 1.7E-20 150.5 16.7 141 76-217 1-191 (219)
59 KOG1145 Mitochondrial translat 99.7 3.9E-15 8.4E-20 159.3 20.6 144 71-217 150-302 (683)
60 COG1217 TypA Predicted membran 99.7 8.4E-15 1.8E-19 154.3 21.9 178 73-255 4-214 (603)
61 cd01895 EngA2 EngA2 subfamily. 99.7 5E-15 1.1E-19 135.1 17.8 152 73-232 1-171 (174)
62 cd00881 GTP_translation_factor 99.7 4.6E-15 9.9E-20 138.1 17.9 154 76-236 1-187 (189)
63 cd01890 LepA LepA subfamily. 99.7 4.1E-15 8.8E-20 138.5 17.0 150 75-236 1-177 (179)
64 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 4.4E-15 9.4E-20 136.2 17.0 151 76-234 2-164 (168)
65 COG1160 Predicted GTPases [Gen 99.7 1.4E-15 3E-20 161.0 15.2 144 75-235 4-164 (444)
66 TIGR03594 GTPase_EngA ribosome 99.6 5.1E-15 1.1E-19 157.9 18.6 141 72-216 170-329 (429)
67 cd01891 TypA_BipA TypA (tyrosi 99.6 1E-14 2.2E-19 139.2 18.5 161 74-237 2-193 (194)
68 cd04165 GTPBP1_like GTPBP1-lik 99.6 5.9E-15 1.3E-19 145.5 17.3 152 76-234 1-221 (224)
69 PRK00093 GTP-binding protein D 99.6 8.4E-15 1.8E-19 156.7 18.1 140 72-216 171-329 (435)
70 PF02421 FeoB_N: Ferrous iron 99.6 1.3E-15 2.8E-20 142.4 9.8 139 75-230 1-155 (156)
71 COG0481 LepA Membrane GTPase L 99.6 2.2E-14 4.7E-19 151.6 18.4 207 74-305 9-245 (603)
72 PF10662 PduV-EutP: Ethanolami 99.6 6.5E-15 1.4E-19 135.5 12.6 134 75-232 2-142 (143)
73 cd01886 EF-G Elongation factor 99.6 1.4E-14 3.1E-19 146.7 14.9 134 76-214 1-158 (270)
74 PRK12739 elongation factor G; 99.6 2.4E-13 5.1E-18 154.1 25.7 109 73-182 7-139 (691)
75 TIGR03598 GTPase_YsxC ribosome 99.6 5.1E-14 1.1E-18 132.7 16.9 141 73-217 17-176 (179)
76 PRK00007 elongation factor G; 99.6 3.1E-13 6.7E-18 153.2 25.4 120 74-197 10-154 (693)
77 cd04163 Era Era subfamily. Er 99.6 1.3E-13 2.9E-18 124.1 18.0 149 74-233 3-166 (168)
78 COG2262 HflX GTPases [General 99.6 2.9E-14 6.4E-19 149.2 14.9 149 71-236 189-356 (411)
79 cd01894 EngA1 EngA1 subfamily. 99.6 8.7E-14 1.9E-18 125.5 16.0 139 78-233 1-155 (157)
80 PRK13351 elongation factor G; 99.6 3.2E-13 7E-18 152.9 24.3 108 74-182 8-139 (687)
81 cd04160 Arfrp1 Arfrp1 subfamil 99.6 3E-14 6.5E-19 131.0 13.1 150 76-232 1-165 (167)
82 KOG0466 Translation initiation 99.6 6.8E-15 1.5E-19 148.2 9.3 214 71-293 35-296 (466)
83 cd01897 NOG NOG1 is a nucleola 99.6 1.1E-13 2.3E-18 127.4 16.4 144 75-234 1-166 (168)
84 cd01878 HflX HflX subfamily. 99.6 1.1E-13 2.5E-18 132.5 17.2 143 72-232 39-201 (204)
85 TIGR03156 GTP_HflX GTP-binding 99.6 9.6E-14 2.1E-18 145.6 17.4 143 73-233 188-349 (351)
86 PRK03003 GTP-binding protein D 99.6 1.4E-13 2.9E-18 149.6 18.8 151 72-232 209-378 (472)
87 TIGR02528 EutP ethanolamine ut 99.5 7.1E-14 1.5E-18 125.7 13.1 133 76-232 2-141 (142)
88 PRK12298 obgE GTPase CgtA; Rev 99.5 1.4E-13 3E-18 146.2 17.0 148 76-236 161-333 (390)
89 cd01898 Obg Obg subfamily. Th 99.5 2.7E-13 5.9E-18 124.7 16.4 146 76-233 2-168 (170)
90 PRK00454 engB GTP-binding prot 99.5 3.8E-13 8.2E-18 127.2 17.6 151 72-233 22-191 (196)
91 PRK14845 translation initiatio 99.5 1.1E-12 2.4E-17 152.6 24.3 178 119-313 527-744 (1049)
92 cd01885 EF2 EF2 (for archaea a 99.5 3.1E-13 6.8E-18 133.3 16.8 106 75-181 1-138 (222)
93 COG0486 ThdF Predicted GTPase 99.5 1.4E-13 3.1E-18 146.3 15.2 153 63-234 206-374 (454)
94 PRK15467 ethanolamine utilizat 99.5 2.1E-13 4.6E-18 126.8 14.6 140 76-238 3-149 (158)
95 TIGR03594 GTPase_EngA ribosome 99.5 2.2E-13 4.8E-18 145.3 16.6 144 76-236 1-160 (429)
96 TIGR00484 EF-G translation elo 99.5 2.8E-12 6.1E-17 145.4 25.5 109 73-182 9-141 (689)
97 cd04157 Arl6 Arl6 subfamily. 99.5 2E-13 4.2E-18 124.5 12.8 148 76-232 1-160 (162)
98 cd04145 M_R_Ras_like M-Ras/R-R 99.5 5E-13 1.1E-17 122.0 15.4 148 74-233 2-161 (164)
99 PRK09518 bifunctional cytidyla 99.5 4.4E-13 9.6E-18 152.4 18.4 150 73-232 449-617 (712)
100 cd04151 Arl1 Arl1 subfamily. 99.5 3.9E-13 8.5E-18 123.2 14.7 148 76-232 1-156 (158)
101 PRK03003 GTP-binding protein D 99.5 3.1E-13 6.6E-18 146.9 16.4 146 73-236 37-199 (472)
102 cd04168 TetM_like Tet(M)-like 99.5 3.3E-13 7.2E-18 134.1 14.4 120 76-198 1-144 (237)
103 PRK12299 obgE GTPase CgtA; Rev 99.5 7.5E-13 1.6E-17 138.1 17.6 146 75-234 159-326 (335)
104 cd04169 RF3 RF3 subfamily. Pe 99.5 4.5E-13 9.7E-18 135.5 15.3 121 75-198 3-151 (267)
105 cd04154 Arl2 Arl2 subfamily. 99.5 5.9E-13 1.3E-17 124.1 15.0 150 74-232 14-171 (173)
106 PRK07560 elongation factor EF- 99.5 3.3E-12 7.2E-17 145.6 23.4 221 73-305 19-340 (731)
107 PRK12296 obgE GTPase CgtA; Rev 99.5 6.2E-13 1.3E-17 144.6 16.1 145 75-234 160-338 (500)
108 PRK09866 hypothetical protein; 99.5 1.1E-12 2.4E-17 144.4 17.9 111 117-233 229-350 (741)
109 PRK12740 elongation factor G; 99.5 4.3E-12 9.3E-17 143.3 23.3 207 80-306 1-339 (668)
110 COG0218 Predicted GTPase [Gene 99.5 1.3E-12 2.9E-17 125.8 16.3 154 72-232 22-193 (200)
111 cd01876 YihA_EngB The YihA (En 99.5 2.7E-12 5.8E-17 116.1 17.4 147 77-232 2-167 (170)
112 PRK11058 GTPase HflX; Provisio 99.5 1E-12 2.2E-17 141.2 17.1 145 75-235 198-361 (426)
113 cd00878 Arf_Arl Arf (ADP-ribos 99.5 9.3E-13 2E-17 120.1 14.0 148 76-232 1-156 (158)
114 smart00173 RAS Ras subfamily o 99.5 1E-12 2.2E-17 120.5 14.1 147 76-234 2-160 (164)
115 cd04164 trmE TrmE (MnmE, ThdF, 99.5 2E-12 4.3E-17 116.4 15.5 138 75-233 2-154 (157)
116 PRK00093 GTP-binding protein D 99.5 1.4E-12 3.1E-17 139.6 16.8 142 75-233 2-159 (435)
117 cd04170 EF-G_bact Elongation f 99.5 9.2E-13 2E-17 132.6 14.4 128 76-212 1-152 (268)
118 cd04167 Snu114p Snu114p subfam 99.5 3.9E-12 8.4E-17 123.7 18.1 140 75-216 1-188 (213)
119 TIGR02729 Obg_CgtA Obg family 99.4 1.8E-12 3.9E-17 134.9 16.7 146 75-233 158-326 (329)
120 PRK00741 prfC peptide chain re 99.4 1.1E-11 2.4E-16 136.4 23.7 108 73-182 9-145 (526)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 1.2E-12 2.6E-17 122.7 13.9 150 74-232 15-172 (174)
122 cd04149 Arf6 Arf6 subfamily. 99.4 1.1E-12 2.4E-17 122.6 13.6 151 73-232 8-166 (168)
123 cd04124 RabL2 RabL2 subfamily. 99.4 2.4E-12 5.1E-17 118.9 15.6 145 75-234 1-156 (161)
124 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1.3E-12 2.9E-17 119.2 13.7 149 76-232 1-158 (160)
125 cd04136 Rap_like Rap-like subf 99.4 1.6E-12 3.5E-17 118.5 14.2 147 75-233 2-160 (163)
126 smart00178 SAR Sar1p-like memb 99.4 1.8E-12 3.8E-17 123.0 14.9 153 74-233 17-182 (184)
127 smart00175 RAB Rab subfamily o 99.4 1.7E-12 3.7E-17 118.3 14.0 148 75-234 1-160 (164)
128 cd01865 Rab3 Rab3 subfamily. 99.4 2.3E-12 5E-17 119.0 15.0 148 75-234 2-161 (165)
129 PRK12297 obgE GTPase CgtA; Rev 99.4 3.6E-12 7.7E-17 136.7 18.5 144 75-234 159-325 (424)
130 cd01861 Rab6 Rab6 subfamily. 99.4 2.5E-12 5.4E-17 117.3 14.9 146 76-233 2-159 (161)
131 PRK04213 GTP-binding protein; 99.4 3.1E-12 6.7E-17 122.1 16.0 148 74-234 9-190 (201)
132 COG5258 GTPBP1 GTPase [General 99.4 3.7E-12 8.1E-17 131.9 17.5 217 71-306 114-403 (527)
133 PRK09518 bifunctional cytidyla 99.4 2.1E-12 4.6E-17 146.9 17.3 145 74-236 275-436 (712)
134 cd00879 Sar1 Sar1 subfamily. 99.4 1.8E-12 4E-17 122.3 14.0 154 73-233 18-188 (190)
135 cd04119 RJL RJL (RabJ-Like) su 99.4 3.2E-12 6.9E-17 116.5 14.8 147 75-234 1-165 (168)
136 cd01879 FeoB Ferrous iron tran 99.4 3.2E-12 7E-17 115.8 14.7 140 79-233 1-154 (158)
137 cd01864 Rab19 Rab19 subfamily. 99.4 4.7E-12 1E-16 116.7 16.0 147 75-232 4-162 (165)
138 PRK05291 trmE tRNA modificatio 99.4 2.1E-12 4.5E-17 139.6 15.8 140 73-235 214-369 (449)
139 cd04138 H_N_K_Ras_like H-Ras/N 99.4 3.4E-12 7.3E-17 115.7 14.7 146 75-233 2-159 (162)
140 cd04150 Arf1_5_like Arf1-Arf5- 99.4 2.9E-12 6.4E-17 118.4 14.5 146 76-232 2-157 (159)
141 cd01866 Rab2 Rab2 subfamily. 99.4 3E-12 6.6E-17 118.8 14.6 148 74-234 4-164 (168)
142 cd04161 Arl2l1_Arl13_like Arl2 99.4 2.7E-12 5.8E-17 119.6 14.3 154 76-232 1-165 (167)
143 cd04158 ARD1 ARD1 subfamily. 99.4 1.8E-12 3.8E-17 120.8 13.0 149 76-234 1-159 (169)
144 cd04175 Rap1 Rap1 subgroup. T 99.4 3.1E-12 6.8E-17 117.6 14.5 148 75-234 2-161 (164)
145 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 3.4E-12 7.4E-17 120.8 15.0 152 74-235 3-169 (183)
146 cd01893 Miro1 Miro1 subfamily. 99.4 6.1E-12 1.3E-16 116.5 16.3 148 76-233 2-161 (166)
147 cd01881 Obg_like The Obg-like 99.4 3E-12 6.6E-17 118.0 14.2 143 79-233 1-174 (176)
148 cd04155 Arl3 Arl3 subfamily. 99.4 2.2E-12 4.8E-17 119.4 13.3 152 72-233 12-172 (173)
149 cd04142 RRP22 RRP22 subfamily. 99.4 2.5E-12 5.4E-17 124.1 14.2 150 76-236 2-174 (198)
150 cd01862 Rab7 Rab7 subfamily. 99.4 2.8E-12 6.1E-17 118.0 13.8 147 76-234 2-165 (172)
151 cd00880 Era_like Era (E. coli 99.4 8.4E-12 1.8E-16 110.5 16.1 144 79-232 1-160 (163)
152 cd04112 Rab26 Rab26 subfamily. 99.4 4.1E-12 8.8E-17 121.0 14.7 149 76-236 2-163 (191)
153 smart00177 ARF ARF-like small 99.4 4.7E-12 1E-16 119.1 14.7 152 74-234 13-172 (175)
154 cd00154 Rab Rab family. Rab G 99.4 5.4E-12 1.2E-16 112.8 14.5 143 76-231 2-157 (159)
155 cd04106 Rab23_lke Rab23-like s 99.4 5.9E-12 1.3E-16 114.9 14.9 146 76-233 2-160 (162)
156 cd01860 Rab5_related Rab5-rela 99.4 6.6E-12 1.4E-16 114.7 15.2 147 75-234 2-161 (163)
157 cd04159 Arl10_like Arl10-like 99.4 6.2E-12 1.4E-16 112.7 14.7 147 77-232 2-157 (159)
158 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 5.9E-12 1.3E-16 115.9 14.8 147 75-234 3-162 (166)
159 PTZ00369 Ras-like protein; Pro 99.4 4.6E-12 1E-16 120.4 14.2 151 73-235 4-166 (189)
160 cd04140 ARHI_like ARHI subfami 99.4 9.3E-12 2E-16 115.0 15.8 147 75-233 2-162 (165)
161 cd04113 Rab4 Rab4 subfamily. 99.4 7.7E-12 1.7E-16 114.4 14.9 145 76-233 2-159 (161)
162 cd04122 Rab14 Rab14 subfamily. 99.4 7.2E-12 1.6E-16 115.7 14.8 147 75-234 3-162 (166)
163 cd04114 Rab30 Rab30 subfamily. 99.4 7.4E-12 1.6E-16 115.2 14.8 148 74-233 7-166 (169)
164 cd04139 RalA_RalB RalA/RalB su 99.4 7.2E-12 1.6E-16 114.0 14.2 145 76-233 2-159 (164)
165 TIGR00490 aEF-2 translation el 99.4 1.3E-11 2.9E-16 140.5 19.5 107 74-182 19-152 (720)
166 cd01867 Rab8_Rab10_Rab13_like 99.4 9.9E-12 2.1E-16 115.1 15.2 148 74-234 3-163 (167)
167 cd04101 RabL4 RabL4 (Rab-like4 99.4 9.4E-12 2E-16 114.0 14.7 146 76-234 2-162 (164)
168 cd01868 Rab11_like Rab11-like. 99.4 9.8E-12 2.1E-16 114.2 14.8 148 75-234 4-163 (165)
169 cd04127 Rab27A Rab27a subfamil 99.4 9.3E-12 2E-16 116.1 14.8 148 75-234 5-175 (180)
170 cd04176 Rap2 Rap2 subgroup. T 99.4 1.2E-11 2.7E-16 113.3 15.1 147 75-233 2-160 (163)
171 cd04177 RSR1 RSR1 subgroup. R 99.4 1.1E-11 2.3E-16 114.9 14.7 148 75-233 2-161 (168)
172 cd01863 Rab18 Rab18 subfamily. 99.4 1.1E-11 2.4E-16 113.2 14.5 145 75-232 1-158 (161)
173 cd04109 Rab28 Rab28 subfamily. 99.4 1.2E-11 2.6E-16 120.3 15.1 150 76-236 2-166 (215)
174 COG1084 Predicted GTPase [Gene 99.4 5.6E-12 1.2E-16 129.0 13.1 121 71-193 165-304 (346)
175 TIGR00231 small_GTP small GTP- 99.4 5.9E-12 1.3E-16 111.6 11.7 144 74-231 1-159 (161)
176 cd00157 Rho Rho (Ras homology) 99.4 1.3E-11 2.8E-16 113.5 14.4 150 75-232 1-169 (171)
177 cd04146 RERG_RasL11_like RERG/ 99.4 1.3E-11 2.8E-16 113.8 14.3 148 76-234 1-162 (165)
178 TIGR00450 mnmE_trmE_thdF tRNA 99.4 1.4E-11 3.1E-16 132.9 16.5 129 72-215 201-345 (442)
179 cd04144 Ras2 Ras2 subfamily. 99.4 1.6E-11 3.4E-16 116.9 14.9 146 77-234 2-161 (190)
180 PF01926 MMR_HSR1: 50S ribosom 99.4 4.8E-12 1E-16 110.9 10.5 99 76-177 1-116 (116)
181 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.8E-11 3.9E-16 117.4 15.2 149 76-236 2-168 (201)
182 cd04123 Rab21 Rab21 subfamily. 99.3 1.7E-11 3.7E-16 111.0 14.0 145 76-233 2-159 (162)
183 cd04137 RheB Rheb (Ras Homolog 99.3 1.5E-11 3.2E-16 115.0 13.7 148 75-234 2-161 (180)
184 PTZ00133 ADP-ribosylation fact 99.3 1.5E-11 3.2E-16 116.8 13.8 151 74-235 17-177 (182)
185 cd04116 Rab9 Rab9 subfamily. 99.3 3.2E-11 6.9E-16 111.5 15.6 148 73-232 4-167 (170)
186 smart00174 RHO Rho (Ras homolo 99.3 1.8E-11 3.9E-16 113.4 13.7 150 77-234 1-170 (174)
187 PLN00223 ADP-ribosylation fact 99.3 1.9E-11 4.1E-16 116.0 14.1 151 75-235 18-177 (181)
188 cd01892 Miro2 Miro2 subfamily. 99.3 2E-11 4.4E-16 114.1 13.8 153 73-236 3-166 (169)
189 KOG1489 Predicted GTP-binding 99.3 1.7E-11 3.7E-16 124.7 14.1 143 75-231 197-362 (366)
190 cd04118 Rab24 Rab24 subfamily. 99.3 2.5E-11 5.4E-16 115.0 14.1 151 76-235 2-165 (193)
191 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 3.1E-11 6.8E-16 113.2 14.6 148 75-234 3-162 (172)
192 cd00876 Ras Ras family. The R 99.3 4.2E-11 9E-16 108.3 14.4 145 76-233 1-158 (160)
193 cd04110 Rab35 Rab35 subfamily. 99.3 5.3E-11 1.2E-15 114.3 15.9 150 74-235 6-166 (199)
194 cd04132 Rho4_like Rho4-like su 99.3 3.2E-11 6.9E-16 113.6 14.0 149 75-234 1-165 (187)
195 cd04115 Rab33B_Rab33A Rab33B/R 99.3 3.9E-11 8.5E-16 111.6 14.4 149 75-232 3-165 (170)
196 cd04147 Ras_dva Ras-dva subfam 99.3 3.5E-11 7.6E-16 115.3 14.4 150 76-235 1-162 (198)
197 PLN03118 Rab family protein; P 99.3 5.3E-11 1.2E-15 115.2 15.7 151 73-236 13-177 (211)
198 PRK09554 feoB ferrous iron tra 99.3 2.4E-11 5.2E-16 138.9 15.2 141 75-233 4-165 (772)
199 cd04148 RGK RGK subfamily. Th 99.3 4.4E-11 9.6E-16 117.3 14.9 148 76-235 2-162 (221)
200 cd04125 RabA_like RabA-like su 99.3 4.9E-11 1.1E-15 112.8 14.5 148 76-235 2-161 (188)
201 cd04104 p47_IIGP_like p47 (47- 99.3 8.5E-11 1.8E-15 113.1 16.3 140 74-216 1-167 (197)
202 cd00882 Ras_like_GTPase Ras-li 99.3 4.3E-11 9.3E-16 104.3 13.0 142 79-231 1-155 (157)
203 cd04126 Rab20 Rab20 subfamily. 99.3 6.7E-11 1.4E-15 116.5 15.6 106 76-182 2-114 (220)
204 cd04111 Rab39 Rab39 subfamily. 99.3 4.1E-11 9E-16 116.6 13.8 148 75-233 3-163 (211)
205 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 7.8E-11 1.7E-15 109.6 15.0 151 77-231 2-161 (164)
206 TIGR00503 prfC peptide chain r 99.3 3.4E-11 7.5E-16 132.5 14.6 123 73-198 10-160 (527)
207 PLN00116 translation elongatio 99.3 3.1E-11 6.7E-16 139.6 14.8 121 73-195 18-186 (843)
208 cd04120 Rab12 Rab12 subfamily. 99.3 5.7E-11 1.2E-15 115.4 14.4 150 76-236 2-163 (202)
209 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 7.8E-11 1.7E-15 110.4 14.7 148 76-234 2-163 (170)
210 PLN03110 Rab GTPase; Provision 99.3 5.3E-11 1.2E-15 116.1 14.0 150 74-235 12-173 (216)
211 cd04143 Rhes_like Rhes_like su 99.3 1.3E-10 2.8E-15 116.3 16.5 154 76-241 2-176 (247)
212 COG0536 Obg Predicted GTPase [ 99.3 8.6E-11 1.9E-15 120.9 15.2 144 76-232 161-329 (369)
213 PF00025 Arf: ADP-ribosylation 99.3 4.8E-11 1E-15 112.7 12.5 153 72-234 12-174 (175)
214 KOG1191 Mitochondrial GTPase [ 99.3 2.1E-11 4.5E-16 130.0 10.9 111 72-183 266-404 (531)
215 cd04135 Tc10 TC10 subfamily. 99.3 1.3E-10 2.7E-15 107.7 14.8 150 76-233 2-171 (174)
216 cd01870 RhoA_like RhoA-like su 99.2 1.6E-10 3.5E-15 107.1 15.1 151 75-233 2-172 (175)
217 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2E-10 4.3E-15 110.2 15.7 158 75-237 1-185 (196)
218 KOG0459 Polypeptide release fa 99.2 2.4E-11 5.2E-16 126.7 9.9 217 72-304 77-354 (501)
219 cd01871 Rac1_like Rac1-like su 99.2 2E-10 4.4E-15 108.1 15.3 151 75-233 2-172 (174)
220 cd01874 Cdc42 Cdc42 subfamily. 99.2 2.4E-10 5.1E-15 107.7 15.2 150 75-232 2-171 (175)
221 cd04128 Spg1 Spg1p. Spg1p (se 99.2 2.6E-10 5.7E-15 108.4 15.3 150 76-235 2-165 (182)
222 PTZ00416 elongation factor 2; 99.2 7.3E-11 1.6E-15 136.4 13.4 123 74-198 19-183 (836)
223 PLN03108 Rab family protein; P 99.2 1.7E-10 3.8E-15 111.9 14.1 150 74-236 6-168 (210)
224 cd00877 Ran Ran (Ras-related n 99.2 2.5E-10 5.4E-15 106.3 14.4 147 76-236 2-159 (166)
225 cd04134 Rho3 Rho3 subfamily. 99.2 1.7E-10 3.7E-15 109.8 13.4 153 75-236 1-174 (189)
226 PLN03071 GTP-binding nuclear p 99.2 2.4E-10 5.3E-15 111.9 14.9 151 72-236 11-172 (219)
227 cd04117 Rab15 Rab15 subfamily. 99.2 3.2E-10 6.9E-15 104.8 14.8 146 76-233 2-159 (161)
228 cd01896 DRG The developmentall 99.2 3E-10 6.6E-15 112.6 15.1 72 76-150 2-89 (233)
229 cd04105 SR_beta Signal recogni 99.2 1.6E-10 3.5E-15 111.9 12.0 106 76-182 2-123 (203)
230 cd04130 Wrch_1 Wrch-1 subfamil 99.2 3.3E-10 7.2E-15 105.6 13.4 147 76-230 2-168 (173)
231 KOG0410 Predicted GTP binding 99.2 1.3E-10 2.7E-15 118.7 11.2 150 71-241 175-346 (410)
232 COG1163 DRG Predicted GTPase [ 99.2 4.7E-10 1E-14 114.8 15.3 74 74-150 63-152 (365)
233 COG0370 FeoB Fe2+ transport sy 99.2 1.2E-10 2.6E-15 128.8 11.6 147 75-239 4-167 (653)
234 cd04121 Rab40 Rab40 subfamily. 99.2 5.6E-10 1.2E-14 107.3 14.9 149 73-233 5-164 (189)
235 COG0480 FusA Translation elong 99.2 1.9E-10 4.1E-15 129.7 13.2 123 72-198 8-156 (697)
236 cd01875 RhoG RhoG subfamily. 99.2 9.7E-10 2.1E-14 105.0 15.5 157 74-238 3-179 (191)
237 COG4917 EutP Ethanolamine util 99.2 2.8E-10 6E-15 102.1 10.8 136 75-234 2-144 (148)
238 COG4108 PrfC Peptide chain rel 99.1 4.2E-10 9.1E-15 118.7 11.2 118 75-194 13-161 (528)
239 TIGR02836 spore_IV_A stage IV 99.1 3.5E-09 7.5E-14 112.2 17.9 149 72-232 15-233 (492)
240 COG3596 Predicted GTPase [Gene 99.1 1.5E-09 3.3E-14 109.1 14.0 158 71-238 36-224 (296)
241 cd04133 Rop_like Rop subfamily 99.1 2.9E-09 6.3E-14 101.1 14.8 149 75-234 2-171 (176)
242 TIGR00437 feoB ferrous iron tr 99.1 9.3E-10 2E-14 122.9 12.8 135 81-233 1-152 (591)
243 cd04103 Centaurin_gamma Centau 99.1 4E-09 8.6E-14 98.0 14.9 143 76-232 2-155 (158)
244 PRK09435 membrane ATPase/prote 99.0 3.2E-09 6.9E-14 110.7 15.2 138 71-216 53-245 (332)
245 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 4.8E-09 1E-13 104.3 15.8 108 74-182 13-131 (232)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 3.8E-09 8.3E-14 100.8 14.2 109 73-182 4-123 (182)
247 cd04131 Rnd Rnd subfamily. Th 99.0 3.8E-09 8.3E-14 100.2 13.9 107 75-182 2-119 (178)
248 PF00350 Dynamin_N: Dynamin fa 99.0 1.2E-09 2.7E-14 101.0 10.4 63 116-178 99-168 (168)
249 PF09439 SRPRB: Signal recogni 99.0 1.2E-09 2.6E-14 104.7 10.1 107 75-182 4-126 (181)
250 cd01899 Ygr210 Ygr210 subfamil 99.0 6.7E-09 1.5E-13 107.8 16.2 74 77-150 1-111 (318)
251 cd04129 Rho2 Rho2 subfamily. 99.0 5.7E-09 1.2E-13 99.0 14.0 149 75-234 2-171 (187)
252 cd01850 CDC_Septin CDC/Septin. 99.0 6.3E-09 1.4E-13 105.9 14.5 135 73-213 3-184 (276)
253 PF08477 Miro: Miro-like prote 99.0 1.4E-09 3E-14 94.8 8.4 103 76-179 1-119 (119)
254 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 1.8E-08 4E-13 99.5 17.1 140 75-216 2-160 (222)
255 smart00176 RAN Ran (Ras-relate 99.0 6.1E-09 1.3E-13 101.1 13.4 143 80-236 1-154 (200)
256 cd01873 RhoBTB RhoBTB subfamil 99.0 7.8E-09 1.7E-13 99.8 14.0 146 75-232 3-192 (195)
257 cd01853 Toc34_like Toc34-like 98.9 2.2E-08 4.8E-13 100.6 15.9 112 71-183 28-164 (249)
258 PF00071 Ras: Ras family; Int 98.9 1.3E-08 2.9E-13 92.9 13.2 146 76-233 1-158 (162)
259 KOG0073 GTP-binding ADP-ribosy 98.9 2.8E-08 6E-13 93.0 14.6 138 74-216 16-163 (185)
260 COG2229 Predicted GTPase [Gene 98.9 6.1E-08 1.3E-12 92.3 16.1 136 74-216 10-163 (187)
261 PRK13768 GTPase; Provisional 98.9 9.9E-09 2.2E-13 103.1 11.4 111 118-235 97-246 (253)
262 PTZ00132 GTP-binding nuclear p 98.9 5E-08 1.1E-12 94.5 15.8 138 71-217 6-154 (215)
263 smart00053 DYNc Dynamin, GTPas 98.9 4E-08 8.6E-13 98.3 14.2 67 117-184 124-208 (240)
264 PF05049 IIGP: Interferon-indu 98.9 2.4E-08 5.1E-13 105.5 12.9 159 71-235 32-217 (376)
265 TIGR00073 hypB hydrogenase acc 98.8 5.5E-08 1.2E-12 94.4 13.6 147 72-233 20-204 (207)
266 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.8 1E-07 2.2E-12 91.6 14.9 152 75-238 23-187 (221)
267 KOG0468 U5 snRNP-specific prot 98.8 1.3E-08 2.8E-13 111.6 9.9 107 74-181 128-262 (971)
268 PRK09602 translation-associate 98.8 1.1E-07 2.3E-12 101.7 16.5 76 74-149 1-113 (396)
269 PLN00023 GTP-binding protein; 98.8 1.3E-07 2.9E-12 98.2 15.5 108 74-182 21-165 (334)
270 cd04102 RabL3 RabL3 (Rab-like3 98.8 2.6E-07 5.7E-12 89.9 16.6 156 76-234 2-195 (202)
271 KOG0078 GTP-binding protein SE 98.8 1.3E-07 2.8E-12 91.7 13.6 136 74-216 12-159 (207)
272 PF03308 ArgK: ArgK protein; 98.7 2E-08 4.3E-13 100.8 7.4 147 71-231 26-225 (266)
273 KOG1143 Predicted translation 98.7 1E-07 2.2E-12 99.1 12.4 219 74-311 167-462 (591)
274 KOG1490 GTP-binding protein CR 98.7 4.5E-08 9.8E-13 104.9 9.6 158 52-216 148-326 (620)
275 KOG0463 GTP-binding protein GP 98.7 4.1E-07 8.9E-12 94.7 16.1 220 71-309 130-425 (641)
276 KOG0467 Translation elongation 98.7 1.6E-07 3.5E-12 104.5 13.9 107 73-180 8-136 (887)
277 PF04548 AIG1: AIG1 family; I 98.7 3.6E-07 7.9E-12 89.2 14.8 109 75-184 1-132 (212)
278 PRK09601 GTP-binding protein Y 98.7 2.8E-07 6.1E-12 97.2 14.7 75 75-149 3-107 (364)
279 TIGR00750 lao LAO/AO transport 98.7 4.5E-07 9.7E-12 93.3 15.5 149 71-231 31-233 (300)
280 KOG0092 GTPase Rab5/YPT51 and 98.6 3.4E-07 7.4E-12 87.8 12.6 152 74-237 5-168 (200)
281 COG1100 GTPase SAR1 and relate 98.6 3.7E-07 8E-12 87.9 12.5 108 75-184 6-127 (219)
282 TIGR00991 3a0901s02IAP34 GTP-b 98.6 3.1E-07 6.7E-12 94.9 12.6 111 72-182 36-167 (313)
283 KOG0076 GTP-binding ADP-ribosy 98.6 2.3E-07 4.9E-12 87.7 10.2 156 75-239 18-194 (197)
284 KOG0070 GTP-binding ADP-ribosy 98.6 2.3E-07 5E-12 88.3 9.4 153 72-234 15-176 (181)
285 COG1703 ArgK Putative periplas 98.6 2.8E-07 6.1E-12 94.0 10.6 141 69-216 46-239 (323)
286 KOG0075 GTP-binding ADP-ribosy 98.6 2.9E-07 6.3E-12 84.9 9.5 148 75-232 21-178 (186)
287 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 1.6E-06 3.5E-11 86.4 15.6 137 76-213 1-159 (232)
288 KOG0394 Ras-related GTPase [Ge 98.6 4.6E-07 1E-11 86.4 10.9 140 72-216 7-163 (210)
289 KOG0084 GTPase Rab1/YPT1, smal 98.6 7.9E-07 1.7E-11 85.6 12.5 132 75-216 10-157 (205)
290 PRK10463 hydrogenase nickel in 98.5 1.9E-07 4.2E-12 95.6 7.6 146 71-233 101-286 (290)
291 KOG0098 GTPase Rab2, small G p 98.5 1E-06 2.2E-11 84.2 11.9 154 74-242 6-174 (216)
292 TIGR00993 3a0901s04IAP86 chlor 98.5 9.6E-07 2.1E-11 98.5 13.3 110 72-182 116-250 (763)
293 KOG1532 GTPase XAB1, interacts 98.5 1.2E-06 2.6E-11 88.3 12.0 146 71-217 16-250 (366)
294 TIGR00101 ureG urease accessor 98.5 1.5E-06 3.2E-11 84.5 12.2 144 74-233 1-193 (199)
295 PTZ00258 GTP-binding protein; 98.4 4E-07 8.7E-12 96.9 7.8 76 74-149 21-126 (390)
296 KOG1486 GTP-binding protein DR 98.4 8.8E-07 1.9E-11 88.3 9.6 77 72-151 60-152 (364)
297 KOG0090 Signal recognition par 98.4 4.7E-07 1E-11 88.3 7.5 107 75-182 39-159 (238)
298 PF03029 ATP_bind_1: Conserved 98.4 2.6E-06 5.7E-11 85.1 12.7 63 119-182 92-170 (238)
299 cd01900 YchF YchF subfamily. 98.4 4.9E-07 1.1E-11 92.1 7.6 73 77-149 1-103 (274)
300 PF00448 SRP54: SRP54-type pro 98.4 3.4E-06 7.3E-11 81.9 12.8 125 74-212 1-174 (196)
301 PF00735 Septin: Septin; Inte 98.4 2.8E-06 6.1E-11 86.9 12.5 132 74-211 4-181 (281)
302 KOG0395 Ras-related GTPase [Ge 98.3 5.9E-06 1.3E-10 80.3 12.2 135 74-216 3-150 (196)
303 PRK10416 signal recognition pa 98.3 7.8E-06 1.7E-10 85.1 13.3 128 72-212 112-293 (318)
304 KOG0465 Mitochondrial elongati 98.3 1E-06 2.2E-11 96.5 6.0 122 73-195 38-185 (721)
305 COG0012 Predicted GTPase, prob 98.3 1.1E-05 2.4E-10 84.7 13.4 76 74-149 2-108 (372)
306 KOG0464 Elongation factor G [T 98.2 1.1E-06 2.4E-11 92.4 5.4 119 75-196 38-180 (753)
307 KOG0087 GTPase Rab11/YPT3, sma 98.2 8.3E-06 1.8E-10 79.4 10.8 137 75-217 15-162 (222)
308 COG0378 HypB Ni2+-binding GTPa 98.2 7E-06 1.5E-10 79.4 10.1 140 74-233 13-198 (202)
309 cd01858 NGP_1 NGP-1. Autoanti 98.2 1.7E-06 3.6E-11 80.1 5.6 54 73-127 101-156 (157)
310 COG5019 CDC3 Septin family pro 98.2 2.5E-05 5.4E-10 81.8 14.1 133 71-209 20-199 (373)
311 PTZ00099 rab6; Provisional 98.2 1.2E-05 2.6E-10 76.4 10.1 109 115-236 26-142 (176)
312 TIGR00064 ftsY signal recognit 98.2 3.8E-05 8.3E-10 78.2 14.4 128 71-212 69-251 (272)
313 PRK14974 cell division protein 98.1 2.6E-05 5.7E-10 81.8 13.3 126 72-212 138-313 (336)
314 KOG1954 Endocytosis/signaling 98.1 5.7E-05 1.2E-09 79.1 15.1 136 75-215 59-258 (532)
315 PRK14722 flhF flagellar biosyn 98.1 2.3E-05 5E-10 83.2 12.6 133 73-220 136-321 (374)
316 TIGR01425 SRP54_euk signal rec 98.1 3.1E-05 6.7E-10 83.6 13.5 110 71-184 97-255 (429)
317 PRK11889 flhF flagellar biosyn 98.1 3.7E-05 8E-10 82.1 13.8 134 72-220 239-417 (436)
318 KOG1707 Predicted Ras related/ 98.1 1.1E-05 2.3E-10 88.4 10.0 111 71-182 6-129 (625)
319 KOG0080 GTPase Rab18, small G 98.1 1.9E-05 4.2E-10 74.0 10.3 157 73-242 10-181 (209)
320 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.7E-05 3.7E-10 72.2 9.9 79 130-217 3-83 (141)
321 cd01851 GBP Guanylate-binding 98.1 4.3E-05 9.4E-10 75.5 13.3 78 71-149 4-102 (224)
322 cd01858 NGP_1 NGP-1. Autoanti 98.1 2.1E-05 4.5E-10 72.8 10.2 77 132-216 2-80 (157)
323 KOG0469 Elongation factor 2 [T 98.1 6.7E-06 1.4E-10 88.4 7.0 106 73-181 18-163 (842)
324 KOG2486 Predicted GTPase [Gene 98.1 1.8E-05 3.8E-10 80.2 9.4 108 74-182 136-262 (320)
325 KOG0071 GTP-binding ADP-ribosy 98.1 5.3E-05 1.1E-09 69.8 11.5 137 74-216 17-163 (180)
326 cd04178 Nucleostemin_like Nucl 98.0 6.2E-06 1.3E-10 78.4 5.6 55 72-127 115-171 (172)
327 PRK12723 flagellar biosynthesi 98.0 0.00011 2.5E-09 78.4 15.8 128 72-212 172-346 (388)
328 KOG0095 GTPase Rab30, small G 98.0 5.1E-05 1.1E-09 70.4 10.7 106 75-182 8-126 (213)
329 KOG0448 Mitofusin 1 GTPase, in 98.0 5.7E-05 1.2E-09 84.1 13.0 95 118-214 206-309 (749)
330 PRK14721 flhF flagellar biosyn 98.0 7.3E-05 1.6E-09 80.6 13.3 128 72-212 189-360 (420)
331 cd01859 MJ1464 MJ1464. This f 98.0 6.3E-05 1.4E-09 69.2 10.7 91 132-236 5-96 (156)
332 PRK12724 flagellar biosynthesi 98.0 0.00016 3.4E-09 77.9 15.0 146 73-234 222-413 (432)
333 PRK12726 flagellar biosynthesi 98.0 6.5E-05 1.4E-09 79.9 11.9 135 72-221 204-383 (407)
334 KOG0091 GTPase Rab39, small G 97.9 6E-05 1.3E-09 71.0 9.9 167 75-256 9-190 (213)
335 KOG0086 GTPase Rab4, small G p 97.9 0.00014 3.1E-09 67.8 12.2 108 75-182 10-128 (214)
336 KOG0077 Vesicle coat complex C 97.9 2.6E-05 5.7E-10 73.5 7.1 109 73-182 19-135 (193)
337 KOG2655 Septin family protein 97.9 0.00017 3.7E-09 75.9 13.7 136 71-212 18-198 (366)
338 PRK00771 signal recognition pa 97.9 0.00021 4.6E-09 77.5 14.4 127 72-212 93-266 (437)
339 cd01856 YlqF YlqF. Proteins o 97.9 9.9E-05 2.2E-09 69.4 10.3 93 126-234 3-99 (171)
340 cd01849 YlqF_related_GTPase Yl 97.8 0.00013 2.8E-09 67.4 10.0 81 140-233 1-82 (155)
341 TIGR03596 GTPase_YlqF ribosome 97.8 0.00014 3.1E-09 73.9 11.1 93 126-234 5-101 (276)
342 KOG0074 GTP-binding ADP-ribosy 97.8 5.4E-05 1.2E-09 69.8 7.0 109 72-182 15-133 (185)
343 PRK05703 flhF flagellar biosyn 97.8 0.00037 8E-09 75.4 14.5 126 74-212 221-391 (424)
344 cd01855 YqeH YqeH. YqeH is an 97.8 2.6E-05 5.6E-10 74.3 5.0 53 74-127 127-189 (190)
345 KOG1491 Predicted GTP-binding 97.8 0.0003 6.5E-09 73.2 12.9 79 71-149 17-125 (391)
346 KOG0072 GTP-binding ADP-ribosy 97.8 9.4E-05 2E-09 68.4 8.2 146 73-232 17-175 (182)
347 TIGR00092 GTP-binding protein 97.8 7.7E-05 1.7E-09 79.0 8.5 75 75-149 3-108 (368)
348 PRK12727 flagellar biosynthesi 97.8 0.00037 8E-09 77.0 14.0 132 73-220 349-524 (559)
349 cd01849 YlqF_related_GTPase Yl 97.8 5.3E-05 1.1E-09 70.0 6.4 53 72-127 98-154 (155)
350 PRK06731 flhF flagellar biosyn 97.7 0.00045 9.8E-09 70.5 13.5 133 73-220 74-251 (270)
351 KOG1547 Septin CDC10 and relat 97.7 0.00029 6.2E-09 70.3 11.6 135 72-212 44-224 (336)
352 PRK06995 flhF flagellar biosyn 97.7 0.00036 7.7E-09 76.5 13.5 127 73-212 255-425 (484)
353 cd02036 MinD Bacterial cell di 97.7 0.00028 6.2E-09 65.5 11.1 105 77-181 2-127 (179)
354 COG1161 Predicted GTPases [Gen 97.7 5E-05 1.1E-09 79.2 6.5 57 72-130 130-189 (322)
355 PRK09563 rbgA GTPase YlqF; Rev 97.7 5.6E-05 1.2E-09 77.4 6.5 56 72-128 119-176 (287)
356 KOG4252 GTP-binding protein [S 97.7 4.9E-05 1.1E-09 72.5 5.4 110 74-184 20-140 (246)
357 TIGR03596 GTPase_YlqF ribosome 97.7 4.8E-05 1E-09 77.4 5.6 56 72-128 116-173 (276)
358 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.0002 4.4E-09 73.3 10.1 91 126-232 8-102 (287)
359 KOG0079 GTP-binding protein H- 97.7 0.0004 8.7E-09 64.6 10.9 134 77-217 11-155 (198)
360 PRK14723 flhF flagellar biosyn 97.7 0.0004 8.6E-09 79.7 13.1 127 73-212 184-357 (767)
361 KOG1424 Predicted GTP-binding 97.7 3.4E-05 7.3E-10 83.6 3.9 54 74-128 314-369 (562)
362 COG1419 FlhF Flagellar GTP-bin 97.6 0.00052 1.1E-08 73.2 12.5 111 73-187 202-357 (407)
363 cd03114 ArgK-like The function 97.6 0.00037 7.9E-09 64.7 9.8 33 117-149 91-123 (148)
364 PRK10867 signal recognition pa 97.6 0.00098 2.1E-08 72.3 14.3 108 71-182 97-254 (433)
365 cd01855 YqeH YqeH. YqeH is an 97.6 0.00035 7.5E-09 66.6 9.7 100 129-236 24-125 (190)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00013 2.7E-09 66.5 6.3 52 76-129 85-139 (141)
367 cd03111 CpaE_like This protein 97.6 0.00055 1.2E-08 59.7 9.9 96 77-177 2-106 (106)
368 PF09547 Spore_IV_A: Stage IV 97.6 0.0021 4.6E-08 69.0 15.8 149 72-232 15-233 (492)
369 KOG0093 GTPase Rab3, small G p 97.5 0.00076 1.6E-08 62.7 10.6 131 75-216 22-168 (193)
370 cd03112 CobW_like The function 97.5 0.00017 3.7E-09 67.4 6.3 22 76-97 2-23 (158)
371 cd03115 SRP The signal recogni 97.5 0.0022 4.7E-08 60.1 13.5 105 76-184 2-155 (173)
372 PF03193 DUF258: Protein of un 97.5 8.6E-05 1.9E-09 70.2 3.7 24 75-98 36-59 (161)
373 cd02038 FleN-like FleN is a me 97.5 0.0018 3.9E-08 59.1 11.9 99 77-180 2-109 (139)
374 cd03110 Fer4_NifH_child This p 97.4 0.0029 6.3E-08 59.5 13.5 66 116-182 91-157 (179)
375 TIGR00959 ffh signal recogniti 97.4 0.00065 1.4E-08 73.6 10.0 108 71-182 96-253 (428)
376 cd01856 YlqF YlqF. Proteins o 97.4 0.0003 6.5E-09 66.1 6.5 55 72-128 113-170 (171)
377 KOG2423 Nucleolar GTPase [Gene 97.4 0.00013 2.9E-09 76.9 4.3 57 71-128 304-362 (572)
378 KOG3883 Ras family small GTPas 97.4 0.0052 1.1E-07 57.6 13.9 135 71-215 6-159 (198)
379 PRK12288 GTPase RsgA; Reviewed 97.3 0.00019 4E-09 75.8 4.5 23 75-97 206-228 (347)
380 PF02492 cobW: CobW/HypB/UreG, 97.3 0.00058 1.3E-08 64.9 7.2 125 76-209 2-177 (178)
381 PRK00098 GTPase RsgA; Reviewed 97.3 0.0014 3E-08 67.6 10.2 84 135-231 77-162 (298)
382 PRK12289 GTPase RsgA; Reviewed 97.3 0.00035 7.6E-09 73.8 5.8 23 75-97 173-195 (352)
383 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0018 4E-08 53.0 8.8 67 76-151 1-71 (99)
384 cd01859 MJ1464 MJ1464. This f 97.3 0.00058 1.3E-08 62.8 6.3 54 72-127 99-155 (156)
385 PRK13796 GTPase YqeH; Provisio 97.2 0.00035 7.5E-09 74.1 5.2 56 74-130 160-222 (365)
386 PRK12289 GTPase RsgA; Reviewed 97.2 0.0018 3.9E-08 68.5 10.5 84 135-232 86-171 (352)
387 KOG0780 Signal recognition par 97.2 0.0009 2E-08 70.7 8.0 130 47-182 73-254 (483)
388 KOG0083 GTPase Rab26/Rab37, sm 97.2 0.00018 4E-09 65.7 2.5 132 79-216 2-145 (192)
389 PRK11537 putative GTP-binding 97.2 0.0034 7.4E-08 65.5 12.3 126 75-212 5-186 (318)
390 TIGR00157 ribosome small subun 97.2 0.003 6.5E-08 63.4 11.2 85 135-232 33-119 (245)
391 TIGR00157 ribosome small subun 97.2 0.00042 9.2E-09 69.5 5.1 25 74-98 120-144 (245)
392 KOG0097 GTPase Rab14, small G 97.2 0.006 1.3E-07 56.4 11.8 133 75-217 12-159 (215)
393 TIGR03597 GTPase_YqeH ribosome 97.2 0.00042 9E-09 73.4 5.0 53 75-128 155-214 (360)
394 PRK01889 GTPase RsgA; Reviewed 97.1 0.0023 5.1E-08 67.7 10.3 82 136-231 110-192 (356)
395 KOG0081 GTPase Rab27, small G 97.1 0.00068 1.5E-08 63.7 5.4 135 77-217 12-167 (219)
396 TIGR02475 CobW cobalamin biosy 97.1 0.0044 9.6E-08 65.3 12.0 23 75-97 5-27 (341)
397 KOG2484 GTPase [General functi 97.1 0.00046 9.9E-09 73.1 4.4 57 71-128 249-307 (435)
398 KOG0088 GTPase Rab21, small G 97.1 0.0013 2.8E-08 61.9 6.5 150 74-234 13-173 (218)
399 COG0552 FtsY Signal recognitio 97.1 0.0038 8.3E-08 65.1 10.5 127 71-212 136-318 (340)
400 TIGR03597 GTPase_YqeH ribosome 97.0 0.0025 5.5E-08 67.4 9.4 98 128-233 52-150 (360)
401 COG0523 Putative GTPases (G3E 97.0 0.0052 1.1E-07 64.3 11.5 130 76-213 3-184 (323)
402 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.003 6.5E-08 64.8 9.4 82 136-231 76-159 (287)
403 cd02042 ParA ParA and ParB of 97.0 0.0048 1E-07 52.8 9.2 70 76-150 1-73 (104)
404 COG0541 Ffh Signal recognition 97.0 0.0034 7.3E-08 67.5 9.8 108 71-182 97-253 (451)
405 KOG1534 Putative transcription 97.0 0.0018 3.8E-08 63.8 6.9 66 117-183 97-179 (273)
406 COG1162 Predicted GTPases [Gen 97.0 0.00071 1.5E-08 69.7 4.2 27 72-98 162-188 (301)
407 KOG0393 Ras-related small GTPa 97.0 0.002 4.4E-08 62.8 7.0 139 74-216 4-164 (198)
408 PRK13796 GTPase YqeH; Provisio 96.9 0.0038 8.3E-08 66.2 9.6 98 128-233 58-156 (365)
409 TIGR01969 minD_arch cell divis 96.9 0.015 3.2E-07 57.2 13.1 64 117-180 108-172 (251)
410 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.00088 1.9E-08 68.7 4.3 26 73-98 160-185 (287)
411 KOG1487 GTP-binding protein DR 96.9 0.0011 2.3E-08 67.0 4.7 75 76-153 61-151 (358)
412 KOG2485 Conserved ATP/GTP bind 96.9 0.0027 5.9E-08 65.6 7.3 96 71-169 140-250 (335)
413 PRK00098 GTPase RsgA; Reviewed 96.9 0.0012 2.7E-08 68.0 4.9 26 73-98 163-188 (298)
414 KOG3886 GTP-binding protein [S 96.8 0.0098 2.1E-07 59.3 10.6 104 75-182 5-130 (295)
415 cd02037 MRP-like MRP (Multiple 96.8 0.003 6.6E-08 59.0 6.8 66 116-181 66-134 (169)
416 PRK12288 GTPase RsgA; Reviewed 96.8 0.0087 1.9E-07 63.3 10.8 86 136-232 118-204 (347)
417 PHA02518 ParA-like protein; Pr 96.8 0.031 6.6E-07 53.5 13.4 64 117-180 76-145 (211)
418 COG1763 MobB Molybdopterin-gua 96.6 0.008 1.7E-07 56.9 8.0 24 74-97 2-25 (161)
419 cd04178 Nucleostemin_like Nucl 96.5 0.006 1.3E-07 58.1 6.8 53 140-194 1-55 (172)
420 PF03205 MobB: Molybdopterin g 96.5 0.011 2.3E-07 54.5 8.1 67 75-148 1-67 (140)
421 PF00004 AAA: ATPase family as 96.4 0.015 3.3E-07 50.8 8.0 22 77-98 1-22 (132)
422 KOG1533 Predicted GTPase [Gene 96.3 0.0052 1.1E-07 61.4 5.0 66 117-183 96-178 (290)
423 PRK10751 molybdopterin-guanine 96.3 0.012 2.6E-07 56.4 7.3 26 73-98 5-30 (173)
424 smart00382 AAA ATPases associa 96.3 0.03 6.6E-07 47.9 9.1 27 74-100 2-28 (148)
425 COG1618 Predicted nucleotide k 96.2 0.05 1.1E-06 51.7 10.8 26 72-97 3-28 (179)
426 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.024 5.2E-07 52.0 8.6 97 72-177 24-125 (144)
427 KOG0447 Dynamin-like GTP bindi 96.2 0.021 4.5E-07 62.9 9.2 65 117-182 411-493 (980)
428 cd02032 Bchl_like This family 96.2 0.035 7.6E-07 55.7 10.3 63 118-180 116-184 (267)
429 cd02117 NifH_like This family 96.1 0.037 7.9E-07 53.8 9.7 63 117-180 116-187 (212)
430 KOG1673 Ras GTPases [General f 96.0 0.057 1.2E-06 50.9 10.0 160 71-241 17-190 (205)
431 KOG3905 Dynein light intermedi 96.0 0.19 4E-06 52.7 14.5 29 71-99 49-77 (473)
432 TIGR03348 VI_IcmF type VI secr 95.9 0.017 3.7E-07 70.0 7.9 106 76-182 113-257 (1169)
433 KOG0052 Translation elongation 95.9 0.0048 1E-07 65.4 2.8 111 71-182 4-156 (391)
434 PF13401 AAA_22: AAA domain; P 95.9 0.0077 1.7E-07 53.0 3.6 26 74-99 4-29 (131)
435 cd02019 NK Nucleoside/nucleoti 95.8 0.034 7.3E-07 44.7 6.6 23 76-98 1-23 (69)
436 PRK08727 hypothetical protein; 95.7 0.11 2.3E-06 51.7 11.3 125 76-233 43-176 (233)
437 COG1116 TauB ABC-type nitrate/ 95.7 0.008 1.7E-07 60.4 3.2 27 73-99 28-54 (248)
438 PRK13695 putative NTPase; Prov 95.7 0.055 1.2E-06 50.8 8.8 22 76-97 2-23 (174)
439 cd03222 ABC_RNaseL_inhibitor T 95.6 0.1 2.2E-06 50.0 10.3 27 72-98 23-49 (177)
440 PF13207 AAA_17: AAA domain; P 95.6 0.0097 2.1E-07 51.9 3.0 23 76-98 1-23 (121)
441 PRK13849 putative crown gall t 95.5 0.16 3.5E-06 50.6 11.8 61 117-179 83-151 (231)
442 PF05729 NACHT: NACHT domain 95.5 0.056 1.2E-06 48.9 7.8 26 75-100 1-26 (166)
443 KOG4181 Uncharacterized conser 95.5 0.13 2.9E-06 54.1 11.2 25 74-98 188-212 (491)
444 cd03116 MobB Molybdenum is an 95.4 0.046 1E-06 51.5 7.2 25 75-99 2-26 (159)
445 COG1126 GlnQ ABC-type polar am 95.4 0.017 3.7E-07 57.2 4.3 26 73-98 27-52 (240)
446 TIGR03499 FlhF flagellar biosy 95.4 0.023 5E-07 58.2 5.5 26 73-98 193-218 (282)
447 TIGR00235 udk uridine kinase. 95.4 0.014 3.1E-07 56.5 3.7 28 72-99 4-31 (207)
448 cd00009 AAA The AAA+ (ATPases 95.4 0.11 2.3E-06 45.1 8.9 27 73-99 18-44 (151)
449 TIGR01281 DPOR_bchL light-inde 95.3 0.098 2.1E-06 52.5 9.6 62 118-180 116-184 (268)
450 PRK05480 uridine/cytidine kina 95.3 0.018 3.8E-07 55.8 4.0 27 72-98 4-30 (209)
451 KOG3859 Septins (P-loop GTPase 95.3 0.072 1.6E-06 54.6 8.3 135 70-210 38-214 (406)
452 PRK01889 GTPase RsgA; Reviewed 95.3 0.021 4.5E-07 60.5 4.7 26 73-98 194-219 (356)
453 PF13671 AAA_33: AAA domain; P 95.2 0.014 3.1E-07 52.2 3.0 23 76-98 1-23 (143)
454 TIGR02881 spore_V_K stage V sp 95.2 0.28 6.2E-06 49.3 12.6 27 72-98 40-66 (261)
455 cd01120 RecA-like_NTPases RecA 95.2 0.14 3.1E-06 45.8 9.4 41 76-131 1-41 (165)
456 PF06858 NOG1: Nucleolar GTP-b 95.2 0.051 1.1E-06 42.9 5.5 45 134-179 9-58 (58)
457 PF03266 NTPase_1: NTPase; In 95.2 0.11 2.4E-06 49.3 8.9 23 76-98 1-23 (168)
458 PF00005 ABC_tran: ABC transpo 95.1 0.015 3.3E-07 51.8 2.8 27 73-99 10-36 (137)
459 TIGR00176 mobB molybdopterin-g 95.1 0.049 1.1E-06 51.0 6.2 23 76-98 1-23 (155)
460 PRK13185 chlL protochlorophyll 95.1 0.14 3.1E-06 51.4 9.9 61 118-179 118-185 (270)
461 COG0455 flhG Antiactivator of 95.0 0.46 9.9E-06 48.5 13.4 66 118-183 113-181 (262)
462 TIGR03574 selen_PSTK L-seryl-t 95.0 0.038 8.3E-07 55.1 5.5 24 76-99 1-24 (249)
463 PRK08084 DNA replication initi 95.0 0.28 6.1E-06 48.7 11.7 24 75-98 46-69 (235)
464 KOG2484 GTPase [General functi 95.0 0.073 1.6E-06 56.8 7.7 66 132-198 140-206 (435)
465 KOG2004 Mitochondrial ATP-depe 95.0 0.027 5.9E-07 63.8 4.8 89 57-145 421-511 (906)
466 PRK06893 DNA replication initi 95.0 0.15 3.3E-06 50.4 9.6 24 75-98 40-63 (229)
467 COG1120 FepC ABC-type cobalami 95.0 0.021 4.6E-07 58.0 3.5 27 72-98 26-52 (258)
468 PRK09270 nucleoside triphospha 94.9 0.025 5.5E-07 55.8 4.0 29 71-99 30-58 (229)
469 cd02040 NifH NifH gene encodes 94.9 0.29 6.3E-06 48.8 11.5 33 117-149 116-152 (270)
470 TIGR01663 PNK-3'Pase polynucle 94.9 0.064 1.4E-06 59.7 7.3 85 71-173 366-452 (526)
471 COG3640 CooC CO dehydrogenase 94.9 0.076 1.6E-06 53.3 7.1 100 71-181 95-198 (255)
472 PRK14737 gmk guanylate kinase; 94.9 0.027 5.9E-07 54.2 3.9 27 72-98 2-28 (186)
473 COG1117 PstB ABC-type phosphat 94.8 0.033 7.1E-07 55.3 4.3 28 72-99 31-58 (253)
474 PRK08233 hypothetical protein; 94.8 0.028 6.2E-07 52.4 3.7 25 74-98 3-27 (182)
475 PRK14738 gmk guanylate kinase; 94.7 0.029 6.4E-07 54.6 3.8 27 71-97 10-36 (206)
476 KOG0781 Signal recognition par 94.7 0.021 4.5E-07 62.1 2.8 133 71-212 375-565 (587)
477 COG1136 SalX ABC-type antimicr 94.6 0.026 5.7E-07 56.2 3.3 26 73-98 30-55 (226)
478 PRK00300 gmk guanylate kinase; 94.6 0.031 6.7E-07 53.6 3.6 26 73-98 4-29 (205)
479 cd01131 PilT Pilus retraction 94.6 0.22 4.7E-06 48.2 9.6 25 75-99 2-26 (198)
480 PRK06835 DNA replication prote 94.6 0.19 4.2E-06 52.8 9.8 24 75-98 184-207 (329)
481 PRK05416 glmZ(sRNA)-inactivati 94.6 0.19 4.1E-06 51.9 9.5 80 72-172 4-89 (288)
482 COG3840 ThiQ ABC-type thiamine 94.6 0.045 9.7E-07 53.2 4.5 29 72-100 23-51 (231)
483 TIGR00554 panK_bact pantothena 94.6 0.032 7E-07 57.6 3.8 28 71-98 59-86 (290)
484 PRK05800 cobU adenosylcobinami 94.5 0.11 2.4E-06 49.4 7.0 72 76-149 3-85 (170)
485 COG0466 Lon ATP-dependent Lon 94.5 0.032 7E-07 63.3 3.8 71 73-143 349-421 (782)
486 cd03264 ABC_drug_resistance_li 94.5 0.031 6.7E-07 54.0 3.3 23 76-98 27-49 (211)
487 cd03225 ABC_cobalt_CbiO_domain 94.5 0.035 7.6E-07 53.5 3.6 27 72-98 25-51 (211)
488 PF05673 DUF815: Protein of un 94.4 0.13 2.8E-06 52.0 7.7 91 69-176 47-147 (249)
489 KOG1707 Predicted Ras related/ 94.4 0.18 3.9E-06 56.2 9.3 105 74-182 425-540 (625)
490 COG1124 DppF ABC-type dipeptid 94.4 0.11 2.4E-06 52.3 7.0 87 74-172 33-134 (252)
491 PRK14495 putative molybdopteri 94.4 0.12 2.5E-06 56.3 7.8 23 75-97 2-24 (452)
492 TIGR01005 eps_transp_fam exopo 94.4 0.17 3.7E-06 58.6 9.7 64 117-180 655-720 (754)
493 cd03238 ABC_UvrA The excision 94.4 0.037 8E-07 52.9 3.5 25 72-96 19-43 (176)
494 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.037 7.9E-07 53.7 3.5 27 72-98 28-54 (218)
495 COG1341 Predicted GTPase or GT 94.3 0.26 5.7E-06 52.8 10.1 28 71-98 70-97 (398)
496 TIGR01360 aden_kin_iso1 adenyl 94.3 0.035 7.6E-07 52.1 3.2 24 75-98 4-27 (188)
497 cd03261 ABC_Org_Solvent_Resist 94.3 0.038 8.2E-07 54.4 3.5 27 72-98 24-50 (235)
498 TIGR02322 phosphon_PhnN phosph 94.3 0.038 8.3E-07 51.9 3.4 24 75-98 2-25 (179)
499 TIGR00960 3a0501s02 Type II (G 94.3 0.039 8.4E-07 53.5 3.5 27 72-98 27-53 (216)
500 TIGR01166 cbiO cobalt transpor 94.3 0.04 8.8E-07 52.4 3.5 26 73-98 17-42 (190)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-87 Score=704.28 Aligned_cols=392 Identities=49% Similarity=0.885 Sum_probs=363.9
Q ss_pred CCCCCCCCCCCCCCCchhhcccccccccccccCCCcccccchHHHHHHHHHHHHHHHHhhcCCccCCcCC-CCCCeEEEE
Q 010060 1 MEQPHKAHRTRKSGSSTKKKSKSDKNKQDKKQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDRSYG-EPPPFVVVV 79 (519)
Q Consensus 1 ~~q~~K~hk~~~~~~k~~~k~~~~~~~~~~~~npkaf~~~~~~~~~R~~rr~~~r~~Kr~~v~~~~R~~~-~~~p~~VaV 79 (519)
|+|+|++|+ |+++|+++|......++|||||+++++.+++|+.+|..+..+|++|+|.++|++. .|||.+|||
T Consensus 1 mde~~~kh~------ka~~k~~~k~~dg~~g~naKafavAa~G~mar~~~rtadi~ekklhVPmvdrtp~d~PPPfIvav 74 (1077)
T COG5192 1 MDEKKAKHS------KAEKKKLKKVMDGKVGNNAKAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRTPKDLPPPFIVAV 74 (1077)
T ss_pred Ccchhhhhh------hHHHhhhhhhhccccccchhhhhhhchHHHHHHHhhccchhhhccccccccCCcccCCCCeEEEe
Confidence 457777775 4555555555555678999999999999999999999999999999999999986 577889999
Q ss_pred ECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHH
Q 010060 80 QGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEF 159 (519)
Q Consensus 80 VG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~ 159 (519)
|||||+||||||++|++.+|+.++..++||||+++++.++++|++||.++++|+|.++.||+|||+||+++||+++|.+|
T Consensus 75 vGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEF 154 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAKIADLVLLLIDGNFGFEMETMEF 154 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHHhhheeEEEeccccCceehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCC
Q 010060 160 LNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPL 239 (519)
Q Consensus 160 L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~ 239 (519)
|++|..||+|+|++|+|++|++++...++..++.|+++||+++|+++++||+|++.+|+|+..++.+|+|||+++++||+
T Consensus 155 Lnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreilnLsRfisVMKfRPl 234 (1077)
T COG5192 155 LNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMKFRPL 234 (1077)
T ss_pred HHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEe-ecCcEEEEecCCCeEEEeeecCCCCCCCChh--hh
Q 010060 240 SWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNL-KKGIKVHIAGVGDYSLAGVTGLADPCPLPSA--AK 316 (519)
Q Consensus 240 ~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~L-k~~~~VhIpG~Gdf~I~~I~~l~dP~pl~~~--~k 316 (519)
.||+.|||+|+||++|+|.|..++++++.++.+.||||++|++| +....|||||+|||.+..|+.|+||||.|.. .+
T Consensus 235 ~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcPp~~a~~~r 314 (1077)
T COG5192 235 EWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCPPPDADHGR 314 (1077)
T ss_pred ccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCCCCcccchh
Confidence 99999999999999999999999999999999999999999999 7777899999999999999999999997654 46
Q ss_pred hcccccccceeeeccCCCCceEEecCceEEecCCccccccccccccCCCCCCCCCCchhhHHHHhHhhhccchhhhhccc
Q 010060 317 KKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHFVQFSKVDDENGKTNHKGKDQDVGETLVKSLQNTKYSIDEKLENS 396 (519)
Q Consensus 317 ~r~l~~k~~~~yap~s~~~~~~~d~d~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 396 (519)
+|+|++|+|+||+|||++|||++|||+|||++|.+ +|+..+ ..+.|+|++|+..||+++..+. ...+
T Consensus 315 rRrLs~k~KliY~PMsdiGGil~dKD~vyiev~~~--n~s~~~---------~~eaGegekm~~~lq~~eq~~g--~dgv 381 (1077)
T COG5192 315 RRRLSLKSKLIYSPMSDIGGILKDKDRVYIEVPTS--NFSKDE---------NSEAGEGEKMKMQLQEIEQDPG--VDGV 381 (1077)
T ss_pred hcccchhhceeecccccccceeecccceeeecccc--CcCcCc---------ccccchhhHHHHHHhhhccCCC--cCce
Confidence 78999999999999999999999999999999988 676643 3679999999999999998776 5678
Q ss_pred ceeeccCCCCCCccc
Q 010060 397 FISLFSRKPNVSSDA 411 (519)
Q Consensus 397 ~~~~~~~~~~~~~~~ 411 (519)
+++||+++..+...|
T Consensus 382 glqlFsnsd~~d~~d 396 (1077)
T COG5192 382 GLQLFSNSDAIDTVD 396 (1077)
T ss_pred eeEEecCCcchhhcc
Confidence 999999977665544
No 2
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=100.00 E-value=7.3e-37 Score=300.66 Aligned_cols=225 Identities=69% Similarity=1.198 Sum_probs=206.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHhhcCCccCCcCCCCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEec
Q 010060 36 AFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSG 115 (519)
Q Consensus 36 af~~~~~~~~~R~~rr~~~r~~Kr~~v~~~~R~~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~ 115 (519)
||+|+++..++|++|+++.|++||++++..+|.+...+|.+|+|+|++|+|||||+++|++......+....|++++...
T Consensus 1 ~~~~~~~~~~~r~~~~~~~~~~k~~~~~~~~r~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~ 80 (225)
T cd01882 1 AFAFSSAVAAARQFQRTADIEEKKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTG 80 (225)
T ss_pred CcccccchHHHHHHHHHHHhhhccccceeeccccccCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEEEec
Confidence 69999999999999999999999999999999988899999999999999999999999998655555556788888777
Q ss_pred CceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHH
Q 010060 116 KQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLK 195 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk 195 (519)
...+++|+||||++..+++.++.||++|||+|++.++..++..++..+..+|+|.+|+|+||+|++.+.+.+.++++.|+
T Consensus 81 ~~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~ 160 (225)
T cd01882 81 KKRRLTFIECPNDINAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLK 160 (225)
T ss_pred CCceEEEEeCCchHHHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHH
Confidence 88999999999999889999999999999999999999999999999999999988889999999865556677888898
Q ss_pred HhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCcc
Q 010060 196 HRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPE 260 (519)
Q Consensus 196 ~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~ 260 (519)
++|+.++.++.++|++||++.+.|+..+..+++|.|+...++.+.||..|||||+++++++|+|+
T Consensus 161 ~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~~~~ 225 (225)
T cd01882 161 HRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDITNPE 225 (225)
T ss_pred HHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecccCCC
Confidence 88888888899999999999999999999999999999999999999999999999999998763
No 3
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=261.72 Aligned_cols=286 Identities=20% Similarity=0.317 Sum_probs=227.1
Q ss_pred CCCCCCCCCCCCCCchhhccccccccccc--ccCCCcccccchHHHHHHHHHHHHHHHHhhcCCccCCcC--CCCCCeEE
Q 010060 2 EQPHKAHRTRKSGSSTKKKSKSDKNKQDK--KQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDRSY--GEPPPFVV 77 (519)
Q Consensus 2 ~q~~K~hk~~~~~~k~~~k~~~~~~~~~~--~~npkaf~~~~~~~~~R~~rr~~~r~~Kr~~v~~~~R~~--~~~~p~~V 77 (519)
++.||+||+ ||.+|++.+...||+++.+ +++|+ ....+..|+.+.++.+.||+..++...|.. ...+|.+|
T Consensus 10 k~~~k~~ks-khrskg~l~~~~kg~~~~~~~~~k~~----~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a~~li 84 (754)
T KOG1980|consen 10 KNANKPHKS-KHRSKGALKRDYKGKVELKPLGHKPD----KTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGAPKLI 84 (754)
T ss_pred cccCccccc-cccccchhhhhcCCcccccccCCCch----hhhhHHHHHhHHHHHHHhHHHHHHHhhhhcccccccccee
Confidence 467999999 7889999999999876644 34555 334567888888999999999999888864 36788899
Q ss_pred EEECCCCCCh--HHHHHHHHhccccCccccccccEEE-EecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcc
Q 010060 78 VVQGPPQVGK--SLLIKSLIKHYTKHNVPEVRGPITI-VSGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEM 154 (519)
Q Consensus 78 aVVG~pnvGK--STLIn~Ll~~~Tr~~v~~~~G~iti-~~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~ 154 (519)
+++.+.+-=+ ++|-..++..+ ..+.+.+ ....+.++.|+-.-+++..+||++++||++||++++...++.
T Consensus 85 ~~~pl~~~id~~~~l~E~i~~~~-------~~~~i~~~i~rFK~~~~fl~P~~n~~~~lD~~kv~D~~~f~~s~~~~~~e 157 (754)
T KOG1980|consen 85 TGLPLKNQIDPLDILYEGIMVQE-------VDSKINVHIPRFKSNLKFLTPKTNFLNILDAAKVSDFVVFLLSAVEEDDE 157 (754)
T ss_pred eccchhhhcchhhhhhhhhcccc-------CCccceecchhhhhceeeeccccchhhhhhhhhhcceeeeecchhhhhhH
Confidence 9988876544 22322222222 2222222 345678898885556788899999999999999999988888
Q ss_pred cHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 155 ETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 155 et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+...++++++++|+|.+|.|+..+-.+. .+...++++.+..++...++....|+.+. ...+..+|+|.++..
T Consensus 158 ~ge~i~~~~~~qGi~s~v~~v~~L~sv~-~K~r~~vkK~l~~~~~k~f~s~~~v~~ld-------~~~dalnllR~l~~~ 229 (754)
T KOG1980|consen 158 FGEQIIRALEAQGIPSYVSVVSDLSSVH-EKFRLDVKKALEKRISKFFPSEKRVMRLD-------TSQDALNLLRGLCVQ 229 (754)
T ss_pred HHHHHHHHHhhcCCccceeeecccchhc-hhhhHHHHHHHHHHHHHhCCCcchheecc-------ccchhHHHHHHhhhc
Confidence 8999999999999999999998888776 55667888888888877777777798877 568999999999999
Q ss_pred cCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEee-ecCC---CCCC
Q 010060 235 KFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGV-TGLA---DPCP 310 (519)
Q Consensus 235 ~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I-~~l~---dP~p 310 (519)
+++.+.||..|+|++++-++++.+. ....|++.+.||+||..|++|++|||||+|||+|.+| .... ||.|
T Consensus 230 k~r~l~~rd~r~Yl~~~~vdf~s~~------s~~~gtL~i~G~vRG~~ln~NrLvHI~g~GDFqi~~I~~~p~~~qdp~~ 303 (754)
T KOG1980|consen 230 KPRVLHWRDNRGYLFADLVDFVSEL------SYSEGTLVIFGYVRGQELNVNRLVHIPGFGDFQINKIDEAPIDGQDPKI 303 (754)
T ss_pred cchheecccchhhhHHHhhhhcccc------CCCcceEEEEEEeecccccccceEeecCccceeEEEeecCCcccCCCcc
Confidence 9999999999999998776665221 1235799999999999999999999999999999999 4444 7887
Q ss_pred CCh
Q 010060 311 LPS 313 (519)
Q Consensus 311 l~~ 313 (519)
+..
T Consensus 304 ik~ 306 (754)
T KOG1980|consen 304 IKK 306 (754)
T ss_pred cCc
Confidence 764
No 4
>COG1159 Era GTPase [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=233.27 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=166.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc----------cccCccccccccEEEEecCceeEEEEcCCCC------ch-----hH
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH----------YTKHNVPEVRGPITIVSGKQRRLQFVECPND------IN-----GM 132 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~----------~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd------l~-----sm 132 (519)
...|||||.||||||||+|+|++. |||+.+. | +++....+++|+||||- +. ..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~---G---I~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR---G---IVTTDNAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhee---E---EEEcCCceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 468999999999999999999997 4555443 4 66677899999999993 22 24
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
..+++.+|++|||+|+..++......+++.|+....| +|+++||+|.+++...+....+.+.. ..++..+||+|
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~~~~~~~~-----~~~f~~ivpiS 153 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLKLIAFLKK-----LLPFKEIVPIS 153 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHHHHHHHHHh-----hCCcceEEEee
Confidence 5567999999999999999999999999999886677 45689999999765434555554433 34677999999
Q ss_pred cccCC------------------cCChhHHHHHH-HHHHhhcCCCCccccCC---CeEEEEEEEecCCccccccCCCCCc
Q 010060 213 GLIHG------------------KYSKREIRNLA-RFISVMKFPPLSWRTSH---PYVLVDRFEDVTPPERVRMNNKCDR 270 (519)
Q Consensus 213 Al~g~------------------~Y~~~ei~~Ll-R~I~~~~~r~~~wR~~~---PYvladr~edit~~~~i~~~~~~~~ 270 (519)
|++|. .||++.+++.. ||++.+..|+..++..+ ||.++..++.+.. + .++
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~------~--~~~ 225 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEE------R--EKG 225 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEe------c--CCC
Confidence 99986 58999999888 99999999998887776 9998888877632 1 235
Q ss_pred eEEEEEEEEeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 271 NVTIYGYLRGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 271 ~l~v~GyVRG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
.+. +++.++ +.+|+.+|+|.||-+|++|+.
T Consensus 226 ~~~----I~a~I~Ver~sQK~IiIGk~G~~iK~IG~ 257 (298)
T COG1159 226 LLK----IHATIYVERESQKGIIIGKNGAMIKKIGT 257 (298)
T ss_pred eEE----EEEEEEEecCCccceEECCCcHHHHHHHH
Confidence 554 557777 999999999999999999985
No 5
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=99.90 E-value=5.8e-24 Score=178.39 Aligned_cols=83 Identities=52% Similarity=0.977 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEee
Q 010060 223 EIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGV 302 (519)
Q Consensus 223 ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I 302 (519)
|+.+|+|+|++++++++.||+.|||||+++++++++. .+++++++++|||||||..|++|++|||||.|||+|++|
T Consensus 1 e~~nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~----~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I 76 (83)
T smart00785 1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDE----EDPKVDRTLVVYGYVRGTGLNANQLVHIPGLGDFQISKI 76 (83)
T ss_pred CHHHHHHHHHhccCCCCcccCCCCeEEEEEeEecCCC----CCCccCcEEEEEEEEcCCCCCCCCEEEeCCcCCeEeeEE
Confidence 4789999999999999999999999999999998752 345678899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 010060 303 TGLADPC 309 (519)
Q Consensus 303 ~~l~dP~ 309 (519)
+.++|||
T Consensus 77 ~~~~dP~ 83 (83)
T smart00785 77 EALPDPC 83 (83)
T ss_pred eecCCCC
Confidence 9999998
No 6
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=99.89 E-value=1.8e-23 Score=176.31 Aligned_cols=85 Identities=49% Similarity=0.879 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEee
Q 010060 223 EIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGV 302 (519)
Q Consensus 223 ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I 302 (519)
|+.+|+|+|++++++++.||..|||||++++++.++++...+++ ++++.|||||||.+|++|++|||||+|||+|++|
T Consensus 1 e~~nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~~--~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I 78 (85)
T PF08142_consen 1 EILNLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESENE--DGTLKVYGYVRGSPLSVNQLVHIPGVGDFQISKI 78 (85)
T ss_pred CHHHHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccCC--ceEEEEEEEEccccccCCCEEEeCCcCCeEeeEe
Confidence 47899999999999999999999999999999998776544333 6799999999999999999999999999999999
Q ss_pred ecCCCCC
Q 010060 303 TGLADPC 309 (519)
Q Consensus 303 ~~l~dP~ 309 (519)
+.++|||
T Consensus 79 ~~~~DPc 85 (85)
T PF08142_consen 79 ESLPDPC 85 (85)
T ss_pred eecCCCC
Confidence 9999999
No 7
>CHL00071 tufA elongation factor Tu
Probab=99.89 E-value=2.7e-21 Score=206.03 Aligned_cols=224 Identities=20% Similarity=0.255 Sum_probs=160.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcccc--------------CccccccccEEEE------ecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTK--------------HNVPEVRGPITIV------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--------------~~v~~~~G~iti~------~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++|++|+|||||+++|++.... ......+ ++|+. ...+.+++|+||||+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~r-g~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKAR-GITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcC-CEeEEccEEEEccCCeEEEEEECCChHH
Confidence 467799999999999999999999985210 0001112 34432 345678999999995
Q ss_pred c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccC--C
Q 010060 129 I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYD--G 205 (519)
Q Consensus 129 l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~--~ 205 (519)
+ ..|+.++..||+++||+|+..++..++.+++..+...|+|.+|+|+||+|++........+.+.+..+|....+. .
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 167 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDD 167 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3 348889999999999999999999999999999999999988889999999864444455566676666433222 3
Q ss_pred ceEEEEecccCC---------------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCC
Q 010060 206 AKLFYLSGLIHG---------------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCD 269 (519)
Q Consensus 206 ~kVf~lSAl~g~---------------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~ 269 (519)
.+++|+||++|. ||. .+..|+..|....+.|... ...|+ +.+++++.+. +.
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~-~~~p~r~~I~~v~~~~----------g~ 234 (409)
T CHL00071 168 IPIVSGSALLALEALTENPKIKRGENKWVD--KIYNLMDAVDSYIPTPERD-TDKPFLMAIEDVFSIT----------GR 234 (409)
T ss_pred ceEEEcchhhcccccccCccccccCCchhh--hHHHHHHHHHhhCCCCCCC-CCCCEEEEEEEEEEeC----------CC
Confidence 789999999874 231 3567777777655544332 23465 5667766542 23
Q ss_pred ceEEEEEEEEeEEeecCcEEEEecCC---CeEEEeeecCCCCC
Q 010060 270 RNVTIYGYLRGCNLKKGIKVHIAGVG---DYSLAGVTGLADPC 309 (519)
Q Consensus 270 ~~l~v~GyVRG~~Lk~~~~VhIpG~G---df~I~~I~~l~dP~ 309 (519)
| .+++|.|..+.+++|+.+.|.+.+ ..+|++|.....|+
T Consensus 235 G-~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v 276 (409)
T CHL00071 235 G-TVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTL 276 (409)
T ss_pred e-EEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCC
Confidence 4 468999999999999999875532 35788888655544
No 8
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.89 E-value=1.8e-21 Score=209.85 Aligned_cols=230 Identities=23% Similarity=0.241 Sum_probs=163.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC-ccccccccEEEE---------------------e--c-----------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPITIV---------------------S--G----------- 115 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~iti~---------------------~--~----------- 115 (519)
.+|.++|+++||.++|||||+.+|++..+.. ..+..+| +|+. . .
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rG-iTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRN-ITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhC-CchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 5788999999999999999999999864321 1111111 1110 0 0
Q ss_pred -----CceeEEEEcCCCC--c-hhHHHHhhccCEEEEEEeCCCC-CcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHH
Q 010060 116 -----KQRRLQFVECPND--I-NGMIDCAKIADLALLLIDGSYG-FEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK 186 (519)
Q Consensus 116 -----~~~rl~fIDtPGd--l-~smld~ak~ADlVLLVVDas~g-~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~ 186 (519)
..++++||||||+ | ..|+.++..+|++||||||..+ ...++.+++.++...|++++|+|+||+|++. ...
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~-~~~ 188 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK-EAQ 188 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC-HHH
Confidence 0247999999996 3 4589999999999999999986 6888999999999999998888999999985 344
Q ss_pred HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCC
Q 010060 187 LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNN 266 (519)
Q Consensus 187 l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~ 266 (519)
+.+....++.++...+....++||+||++| .++..|+.+|....+.+.......+.+.+++.+++..+.... .
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G-----~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~--~ 261 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLK-----YNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDI--E 261 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCC-----CCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcc--c
Confidence 555566666655433456789999999987 678888888886555443322233446688877764221100 0
Q ss_pred CCCceEEEEEEEEeEEeecCcEEEEecCC-------C-------eEEEeeecCCCCCC
Q 010060 267 KCDRNVTIYGYLRGCNLKKGIKVHIAGVG-------D-------YSLAGVTGLADPCP 310 (519)
Q Consensus 267 ~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-------d-------f~I~~I~~l~dP~p 310 (519)
.. ...+++|+|..+.+++|+.+.|...+ . ..|++|.....|++
T Consensus 262 ~~-~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~ 318 (460)
T PTZ00327 262 NL-KGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQ 318 (460)
T ss_pred CC-ceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECC
Confidence 11 24578999999999999999876533 2 36888887655554
No 9
>PRK12735 elongation factor Tu; Reviewed
Probab=99.89 E-value=4.1e-21 Score=203.86 Aligned_cols=225 Identities=21% Similarity=0.254 Sum_probs=161.0
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhccc--------------cCccccccccEEE------EecCceeEEEEcCCCC-
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHYT--------------KHNVPEVRGPITI------VSGKQRRLQFVECPND- 128 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--------------r~~v~~~~G~iti------~~~~~~rl~fIDtPGd- 128 (519)
...|.++|+++|++|+|||||+++|++... +......+| +|+ +...+.+++|+||||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG-iT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARG-ITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcC-ceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 356779999999999999999999997311 111111223 333 2345678999999996
Q ss_pred -c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--C
Q 010060 129 -I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--D 204 (519)
Q Consensus 129 -l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~ 204 (519)
+ ..|+.++..||++|||+|+..++..++.+++..+...|+|.+|+|+||+|+..+.+.+..+...++.++....+ .
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~ 166 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD 166 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence 3 34888899999999999999999999999999999999998877899999985433344445556655533222 2
Q ss_pred CceEEEEecccCC-------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEE
Q 010060 205 GAKLFYLSGLIHG-------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYG 276 (519)
Q Consensus 205 ~~kVf~lSAl~g~-------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~G 276 (519)
..+++++||++|. ||. .+..|++.|....+.|..+. ..|+ +.++++..+. +.| ++++|
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~--~~~~Ll~~l~~~~~~p~~~~-~~p~r~~I~~~f~v~----------g~G-tvv~G 232 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEA--KILELMDAVDSYIPEPERAI-DKPFLMPIEDVFSIS----------GRG-TVVTG 232 (396)
T ss_pred ceeEEecchhccccCCCCCcccc--cHHHHHHHHHhcCCCCCccC-CCCeEEEEEEEEecC----------Cce-EEEEE
Confidence 4789999999873 442 56778888877665444332 3465 5566665542 234 56999
Q ss_pred EEEeEEeecCcEEEEecCC---CeEEEeeecCCCCC
Q 010060 277 YLRGCNLKKGIKVHIAGVG---DYSLAGVTGLADPC 309 (519)
Q Consensus 277 yVRG~~Lk~~~~VhIpG~G---df~I~~I~~l~dP~ 309 (519)
.|..+.+++|+.+.|.+.+ ..+|++|+....|+
T Consensus 233 ~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v 268 (396)
T PRK12735 233 RVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLL 268 (396)
T ss_pred EEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEe
Confidence 9999999999999887653 45788888655544
No 10
>PRK12736 elongation factor Tu; Reviewed
Probab=99.88 E-value=6.9e-21 Score=202.02 Aligned_cols=224 Identities=22% Similarity=0.258 Sum_probs=160.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcccc--------------CccccccccEEEE------ecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTK--------------HNVPEVRGPITIV------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--------------~~v~~~~G~iti~------~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++||+|+|||||+++|++.... ......+| +|+. .....+++||||||+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg-~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERG-ITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcC-ccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 567799999999999999999999974210 01111122 3332 234678999999996
Q ss_pred c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CC
Q 010060 129 I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DG 205 (519)
Q Consensus 129 l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~ 205 (519)
+ ..|+.++..||++|||+|+..|+..++.+++..+...|+|.+|+|+||+|++.+.+....+.+.++.++....+ ..
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 167 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 3 34888899999999999999999999999999999999998878999999985433333345566655433222 34
Q ss_pred ceEEEEecccCC-----cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEE
Q 010060 206 AKLFYLSGLIHG-----KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLR 279 (519)
Q Consensus 206 ~kVf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVR 279 (519)
.+++++||++|. || ..+..|+..|....+.|... ...|+ +.++++..++ +.| .+++|.|.
T Consensus 168 ~~ii~vSa~~g~~~~~~~~--~~i~~Ll~~l~~~lp~~~~~-~~~p~r~~I~~~~~~~----------g~G-~Vv~G~v~ 233 (394)
T PRK12736 168 IPVIRGSALKALEGDPKWE--DAIMELMDAVDEYIPTPERD-TDKPFLMPVEDVFTIT----------GRG-TVVTGRVE 233 (394)
T ss_pred ccEEEeeccccccCCCcch--hhHHHHHHHHHHhCCCCCCC-CCCCeEEEEEEEEecC----------CcE-EEEEEEEe
Confidence 789999999862 44 35677777777766544432 23466 5677776542 234 56899999
Q ss_pred eEEeecCcEEEEecCC---CeEEEeeecCCCCC
Q 010060 280 GCNLKKGIKVHIAGVG---DYSLAGVTGLADPC 309 (519)
Q Consensus 280 G~~Lk~~~~VhIpG~G---df~I~~I~~l~dP~ 309 (519)
.+.+++|+.+.+.+.+ ...|++|.....|+
T Consensus 234 ~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~ 266 (394)
T PRK12736 234 RGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLL 266 (394)
T ss_pred ecEEecCCEEEEecCCCCeEEEEEEEEECCEEc
Confidence 9999999999876653 36788888755544
No 11
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.88 E-value=4e-21 Score=213.86 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=161.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE-------ecCceeEEEEcCCCC--c-hhHHHHhhccCEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV-------SGKQRRLQFVECPND--I-NGMIDCAKIADLALL 144 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~-------~~~~~rl~fIDtPGd--l-~smld~ak~ADlVLL 144 (519)
.+|+++|++|+|||||+++|++..+.........++|+. ...+..+.||||||+ | ..|+.++..+|++||
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 479999999999999999999853221111111223332 123567899999996 4 458899999999999
Q ss_pred EEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 145 LIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 145 VVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
|+|+..++.+++.+++.++...|+|.+|+|+||+|++. ...+..+...++..+........++|++||++| .++
T Consensus 81 VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG-----~gI 154 (614)
T PRK10512 81 VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAVLREYGFAEAKLFVTAATEG-----RGI 154 (614)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC-----CCC
Confidence 99999999999999999999999998878999999984 345555666666555333345678999999987 567
Q ss_pred HHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeee
Q 010060 225 RNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVT 303 (519)
Q Consensus 225 ~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~ 303 (519)
..|...|.... .+..+....+.+.+|+++.++ +.| ++++|+|..+.+++|+.+.|.+.| ..+|++|.
T Consensus 155 ~~L~~~L~~~~-~~~~~~~~~~rl~Id~vf~v~----------G~G-tVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq 222 (614)
T PRK10512 155 DALREHLLQLP-EREHAAQHRFRLAIDRAFTVK----------GAG-LVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLH 222 (614)
T ss_pred HHHHHHHHHhh-ccccCcCCCceEEEEEEeccC----------CCe-EEEEEEEecceEecCCEEEEcCCCCcEEEEEEe
Confidence 77777776543 333332233447788887652 234 578999999999999999887655 57899998
Q ss_pred cCCCCCC
Q 010060 304 GLADPCP 310 (519)
Q Consensus 304 ~l~dP~p 310 (519)
....|+.
T Consensus 223 ~~~~~v~ 229 (614)
T PRK10512 223 AQNQPTE 229 (614)
T ss_pred cCCcCCC
Confidence 7766664
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=99.88 E-value=9.4e-21 Score=205.31 Aligned_cols=224 Identities=22% Similarity=0.283 Sum_probs=161.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc--------------cCccccccccEEE------EecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT--------------KHNVPEVRGPITI------VSGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--------------r~~v~~~~G~iti------~~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++|++|+|||||+++|+.... .......+| +|+ +...+.+++||||||+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG-iTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG-ITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC-eeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 46679999999999999999999996310 001111122 333 2345779999999996
Q ss_pred c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CC
Q 010060 129 I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DG 205 (519)
Q Consensus 129 l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~ 205 (519)
+ ..|+.++..+|++||||||..|...++.+++..+...|+|.+|+|+||+|++........+.+.++.++....+ ..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~ 236 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDD 236 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 3 35889999999999999999999999999999999999998888999999986444445555667666543222 36
Q ss_pred ceEEEEecccCC---------------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCC
Q 010060 206 AKLFYLSGLIHG---------------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCD 269 (519)
Q Consensus 206 ~kVf~lSAl~g~---------------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~ 269 (519)
.+++|+||+++. ||. .+..|+..|....+.|.... ..|+ +.+++++.+. +.
T Consensus 237 ~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~--~i~~Ll~~l~~~~~~p~r~~-~~p~r~~I~~vf~v~----------g~ 303 (478)
T PLN03126 237 IPIISGSALLALEALMENPNIKRGDNKWVD--KIYELMDAVDSYIPIPQRQT-DLPFLLAVEDVFSIT----------GR 303 (478)
T ss_pred ceEEEEEccccccccccccccccCCCchhh--hHHHHHHHHHHhCCCCCCcc-ccceeeEEEEEEEeC----------Cc
Confidence 789999998872 332 35667777765443343322 3355 6677776552 22
Q ss_pred ceEEEEEEEEeEEeecCcEEEEecCCC---eEEEeeecCCCCC
Q 010060 270 RNVTIYGYLRGCNLKKGIKVHIAGVGD---YSLAGVTGLADPC 309 (519)
Q Consensus 270 ~~l~v~GyVRG~~Lk~~~~VhIpG~Gd---f~I~~I~~l~dP~ 309 (519)
| .+++|.|..+.+++|+.+.|.+.|. .+|++|.....|+
T Consensus 304 G-tVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v 345 (478)
T PLN03126 304 G-TVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKIL 345 (478)
T ss_pred e-EEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeEC
Confidence 3 5789999999999999999977664 4688887665544
No 13
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=2.4e-22 Score=210.56 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=208.8
Q ss_pred CCCCCCCCCCCCchhhcccccccccccccCCCcccccchHHHHHHHHHHHHHHHHhhcCCccCCc--CCCCCCeEEEEEC
Q 010060 4 PHKAHRTRKSGSSTKKKSKSDKNKQDKKQNPRAFAFTSSVKAKRLQSRAVEKEQRRLHIPTIDRS--YGEPPPFVVVVQG 81 (519)
Q Consensus 4 ~~K~hk~~~~~~k~~~k~~~~~~~~~~~~npkaf~~~~~~~~~R~~rr~~~r~~Kr~~v~~~~R~--~~~~~p~~VaVVG 81 (519)
.||++|+ ||++|.++|.+.|++++.....|+.- .....++.|+.+.+|.+.+++..+...++. ...+++.+|.||.
T Consensus 11 ~~k~yks-khask~alk~~yk~kve~~~~g~~~~-~~~~~k~dRrN~aKq~~~~~i~~~~en~~~f~gknGa~kvItIVp 88 (769)
T COG5177 11 GHKSYKS-KHASKGALKRLYKGKVEKEPVGTGKP-DKQMKKRDRRNRAKQKSIGSIARIKENKLPFSGKNGAYKVITIVP 88 (769)
T ss_pred cCCcccc-cccchhHHHHHhcCCccccCCCCCCc-hhhhHHhhhhhhHHHhhhhHHHHHHhhcCcccCCCCCceEEEEee
Confidence 3677777 78899999999999888776666532 122345566667777777788887776664 3578999999999
Q ss_pred CCCCChH-HHHHHHHhccccCc--cccccccEEEE---ecCceeEEEEcCCC--CchhHHHHhhccCEEEEEEeCCCCCc
Q 010060 82 PPQVGKS-LLIKSLIKHYTKHN--VPEVRGPITIV---SGKQRRLQFVECPN--DINGMIDCAKIADLALLLIDGSYGFE 153 (519)
Q Consensus 82 ~pnvGKS-TLIn~Ll~~~Tr~~--v~~~~G~iti~---~~~~~rl~fIDtPG--dl~smld~ak~ADlVLLVVDas~g~e 153 (519)
+.|-=-+ -++..|+...+... +....+.+... ...+..+.|+= |. .+.+++++++++|+|+|++++...++
T Consensus 89 L~n~~d~~dil~klL~~~d~e~~m~q~~~~~~~ys~~i~~fK~Nllf~~-pd~~~f~~l~d~ckVsD~VvF~ls~vqEVD 167 (769)
T COG5177 89 LGNECDGYDILDKLLHGNDDEGIMVQEVDGGLFYSVHIEEFKMNLLFKR-PDELSFFQLGDVCKVSDIVVFGLSDVQEVD 167 (769)
T ss_pred cccccchHHHHHHHHccCCcccccceeccCceEEeeeHHHhhcceeEec-cchhhhhhhhhhheeccEEEEEecchhhhh
Confidence 9854333 34555555532222 11223322221 23355566653 33 36678999999999999999887777
Q ss_pred ccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 154 METFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 154 ~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+-...+.+.++.+|+..+|.++.-+-.+...+...++++.|..++...|+...+||.+.. ..+..+.+|.+|+
T Consensus 168 efge~i~r~l~~qgI~s~i~~~~~ls~v~s~k~~~~vKqslesf~~~fFp~~ERV~~~~~-------~~DALnv~R~lct 240 (769)
T COG5177 168 EFGEQIGRKLKLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGG-------LMDALNVVRILCT 240 (769)
T ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCchhheeeccc-------cHHHHHHHHHHhc
Confidence 666789999999999888776655444433344567788888888777788899998874 3789999999999
Q ss_pred hcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeecCCC
Q 010060 234 MKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLAD 307 (519)
Q Consensus 234 ~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~l~d 307 (519)
..+|.+.||.+|||+++.... -.+|.+.+.|.|||..+++|.++||||+|||++.+|...+.
T Consensus 241 s~pR~i~wrdnR~Yiv~~e~s------------ys~G~l~~~g~VrG~g~n~nrL~Hi~~fgdF~~nkI~~~~q 302 (769)
T COG5177 241 SVPRSINWRDNRPYIVPSEAS------------YSDGELFYEGTVRGIGFNANRLKHIPDFGDFLSNKIIVNGQ 302 (769)
T ss_pred cCCcccccccCCceeeecccc------------cCCCceEEEEEeeccccCchheeecCccchhhhheeeeccc
Confidence 999999999999999985432 13678999999999999999999999999999999987654
No 14
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=9.4e-21 Score=200.87 Aligned_cols=224 Identities=20% Similarity=0.247 Sum_probs=158.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc--------------ccCccccccccEEEE------ecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY--------------TKHNVPEVRGPITIV------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr~~v~~~~G~iti~------~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++|++|+|||||+++|++.. ++......+| +|+. ...+.+++||||||+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG-~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG-ITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC-cceeeEEEEEcCCCEEEEEEECCchHH
Confidence 4667899999999999999999998531 0101111122 3321 245678999999996
Q ss_pred c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccC--C
Q 010060 129 I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYD--G 205 (519)
Q Consensus 129 l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~--~ 205 (519)
+ ..|+.++..+|++|||+|+..|+..++.+++..+...|+|.+|+|+||+|+..+.+....+.+.++..+....+. .
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 3 348888999999999999999999999999999999999988778999999864433444445565555332222 3
Q ss_pred ceEEEEecccCC-----cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEE
Q 010060 206 AKLFYLSGLIHG-----KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLR 279 (519)
Q Consensus 206 ~kVf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVR 279 (519)
.+++++||+++. || ..+..|+..|....+.|..+. ..|+ +.+++++.+. +.| .+++|.|.
T Consensus 168 ~~ii~vSa~~g~~g~~~~~--~~~~~ll~~l~~~~~~~~~~~-~~p~r~~V~~vf~~~----------g~G-~Vv~G~v~ 233 (394)
T TIGR00485 168 TPIIRGSALKALEGDAEWE--AKILELMDAVDEYIPTPERET-DKPFLMPIEDVFSIT----------GRG-TVVTGRVE 233 (394)
T ss_pred ccEEECccccccccCCchh--HhHHHHHHHHHhcCCCCCCCC-CCCeEEEEEEEEeeC----------Cce-EEEEEEEE
Confidence 789999999862 33 245667777766555444332 3465 5677766542 233 57899999
Q ss_pred eEEeecCcEEEEecC---CCeEEEeeecCCCCC
Q 010060 280 GCNLKKGIKVHIAGV---GDYSLAGVTGLADPC 309 (519)
Q Consensus 280 G~~Lk~~~~VhIpG~---Gdf~I~~I~~l~dP~ 309 (519)
.+.+++|+.|.+.+. ....|++|.....|+
T Consensus 234 ~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~ 266 (394)
T TIGR00485 234 RGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKEL 266 (394)
T ss_pred eeEEeCCCEEEEecCCCCcEEEEEEEEECCeEE
Confidence 999999999988653 356788888765444
No 15
>PLN03127 Elongation factor Tu; Provisional
Probab=99.87 E-value=2.2e-20 Score=201.18 Aligned_cols=226 Identities=22% Similarity=0.282 Sum_probs=158.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc--------------ccCccccccccEEE------EecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY--------------TKHNVPEVRGPITI------VSGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr~~v~~~~G~iti------~~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++||+|+|||||+++|++.. ++......+| +|+ +...+.+++|+||||+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rG-iTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARG-ITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcC-ceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 5677999999999999999999998431 0000011122 333 2345678999999996
Q ss_pred -chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CC
Q 010060 129 -INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DG 205 (519)
Q Consensus 129 -l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~ 205 (519)
+..|+.++..||++|||+|+..++..++.+++..+...|+|.+|+|+||+|++...+....+.+.++..+....+ ..
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~ 216 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDE 216 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 345888888999999999999999999999999999999998777999999986433333344455554422112 34
Q ss_pred ceEEEEecccCC-----cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEE
Q 010060 206 AKLFYLSGLIHG-----KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLR 279 (519)
Q Consensus 206 ~kVf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVR 279 (519)
.+++++||+++. .+....+..|+..|....+.|..+. ..|+ +.++++..+. +.| ++++|.|.
T Consensus 217 vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~-~~pfr~~I~~vf~v~----------g~G-tVvtG~v~ 284 (447)
T PLN03127 217 IPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVL-DKPFLMPIEDVFSIQ----------GRG-TVATGRVE 284 (447)
T ss_pred ceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCccc-ccceEeeEEEEEEcC----------Cce-EEEEEEEE
Confidence 688999987541 1223457788888877666554432 2355 5566665542 233 67899999
Q ss_pred eEEeecCcEEEEecCC-----CeEEEeeecCCCCC
Q 010060 280 GCNLKKGIKVHIAGVG-----DYSLAGVTGLADPC 309 (519)
Q Consensus 280 G~~Lk~~~~VhIpG~G-----df~I~~I~~l~dP~ 309 (519)
.+.+++|+.+.+.|.+ ...|++|+....++
T Consensus 285 ~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v 319 (447)
T PLN03127 285 QGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKIL 319 (447)
T ss_pred ccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEe
Confidence 9999999999876532 35788887665554
No 16
>PRK00049 elongation factor Tu; Reviewed
Probab=99.87 E-value=2.3e-20 Score=198.23 Aligned_cols=225 Identities=21% Similarity=0.246 Sum_probs=161.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcccc--------------CccccccccEEEE------ecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTK--------------HNVPEVRGPITIV------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--------------~~v~~~~G~iti~------~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++|++|+|||||+++|++...+ ... +...++|+. ...+.+++|+||||+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~-E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPE-EKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChH-HHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 456789999999999999999999984211 000 111223332 235678999999996
Q ss_pred c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CC
Q 010060 129 I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DG 205 (519)
Q Consensus 129 l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~ 205 (519)
+ ..++.++..||++|||+|+..++..++.+++..+...|+|.+|+|+||+|++...+.+..+.+.+..+|..-.+ ..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDD 167 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccC
Confidence 3 34778889999999999999999999999999999999998777899999985444444555566666543222 45
Q ss_pred ceEEEEecccCC-------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEE
Q 010060 206 AKLFYLSGLIHG-------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGY 277 (519)
Q Consensus 206 ~kVf~lSAl~g~-------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~Gy 277 (519)
.+++++||+++. ||. .+..|+..|....+.|... ...|+ +.++++..+. +.| ++++|.
T Consensus 168 ~~iv~iSa~~g~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~-~~~p~r~~I~~~f~v~----------g~G-~Vv~G~ 233 (396)
T PRK00049 168 TPIIRGSALKALEGDDDEEWEK--KILELMDAVDSYIPTPERA-IDKPFLMPIEDVFSIS----------GRG-TVVTGR 233 (396)
T ss_pred CcEEEeecccccCCCCcccccc--cHHHHHHHHHhcCCCCCCC-CCCCeEEEEEEEEeeC----------Cce-EEEEEE
Confidence 789999999863 342 4677778877755544332 23466 5566665542 234 568999
Q ss_pred EEeEEeecCcEEEEecC---CCeEEEeeecCCCCCC
Q 010060 278 LRGCNLKKGIKVHIAGV---GDYSLAGVTGLADPCP 310 (519)
Q Consensus 278 VRG~~Lk~~~~VhIpG~---Gdf~I~~I~~l~dP~p 310 (519)
|..+.+++|+.+.|.+. -..+|++|+....+++
T Consensus 234 v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~ 269 (396)
T PRK00049 234 VERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLD 269 (396)
T ss_pred EeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeC
Confidence 99999999999988654 2467888887655543
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=1.3e-21 Score=197.20 Aligned_cols=209 Identities=19% Similarity=0.168 Sum_probs=144.8
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc---CccccccccE-EEEecCceeEEEEcCCCCc------hh-----HHHHhhccC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPI-TIVSGKQRRLQFVECPNDI------NG-----MIDCAKIAD 140 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~i-ti~~~~~~rl~fIDtPGdl------~s-----mld~ak~AD 140 (519)
.|+|+|+||||||||+|+|++.... ....+.+..+ .+......+++|+||||.. .. +..++..||
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999996311 0000111111 1333445679999999942 11 345678999
Q ss_pred EEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC---
Q 010060 141 LALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG--- 217 (519)
Q Consensus 141 lVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~--- 217 (519)
++|+|+|++.+...+ ..++..++..+.|. ++|+||+|+... ..+......+. ......++|++||++|.
T Consensus 82 vvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl~~~-~~~~~~~~~~~-----~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDNKFK-DKLLPLIDKYA-----ILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeCCCH-HHHHHHHHHHH-----hhcCCCceEEEecCCCCCHH
Confidence 999999998765443 56677777778885 468999999743 33322222222 22344589999999885
Q ss_pred ---------------cCChhHHHHHH-HHHHhhcCCCCccccCC---CeEEEEEEEecCCccccccCCCCCceEEEEEEE
Q 010060 218 ---------------KYSKREIRNLA-RFISVMKFPPLSWRTSH---PYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYL 278 (519)
Q Consensus 218 ---------------~Y~~~ei~~Ll-R~I~~~~~r~~~wR~~~---PYvladr~edit~~~~i~~~~~~~~~l~v~GyV 278 (519)
.|+.+.+++.. +|++.+.+|+..++..+ ||.++..++.+.. .+ ++.+ ++
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~------~~--~~~~----~i 221 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF------NE--KGLL----KI 221 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE------CC--CCeE----EE
Confidence 37777666665 77888888887765554 9999998887632 11 2333 36
Q ss_pred EeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 279 RGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 279 RG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
+..++ +.+|+-+|+|.||-.|++|+.
T Consensus 222 ~~~i~v~~~s~k~iiig~~g~~ik~i~~ 249 (270)
T TIGR00436 222 HALISVERESQKKIIIGKNGSMIKAIGI 249 (270)
T ss_pred EEEEEECcCCceeEEEcCCcHHHHHHHH
Confidence 67777 999999999999999999974
No 18
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=2.5e-20 Score=206.57 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=154.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEE------EecCceeEEEEcCCCC--ch-hHHHHhhccCEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI------VSGKQRRLQFVECPND--IN-GMIDCAKIADLALLL 145 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti------~~~~~~rl~fIDtPGd--l~-smld~ak~ADlVLLV 145 (519)
.+|+++|++|+|||||+++|++..+.........++|+ +...+..+.||||||+ +. .|+.++..+|++|||
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 47999999999999999999975322111111112222 2334578999999996 33 488899999999999
Q ss_pred EeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc-CCceEEEEecccCCcCChhHH
Q 010060 146 IDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY-DGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 146 VDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~-~~~kVf~lSAl~g~~Y~~~ei 224 (519)
+|++.|+.+++.+++.++...|+|++|+|+||+|++. ...+....+.++..+....+ ...++|++||++| .++
T Consensus 81 VDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG-----~GI 154 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-EEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG-----QGI 154 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-HHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC-----CCc
Confidence 9999999999999999999999997888999999985 33444455555554433323 3689999999987 344
Q ss_pred HHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEee
Q 010060 225 RNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGV 302 (519)
Q Consensus 225 ~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I 302 (519)
..+...|..........+...|+ +.+++++.++ +.| .+++|+|..+.+++|+.+.|...| ..+|++|
T Consensus 155 ~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~----------G~G-tVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~i 223 (581)
T TIGR00475 155 GELKKELKNLLESLDIKRIQKPLRMAIDRAFKVK----------GAG-TVVTGTAFSGEVKVGDNLRLLPINHEVRVKAI 223 (581)
T ss_pred hhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecC----------CcE-EEEEEEEecceEecCCEEEECCCCceEEEeEE
Confidence 44444433222111111233455 6788887652 234 578999999999999999776555 6889999
Q ss_pred ecCCCCCC
Q 010060 303 TGLADPCP 310 (519)
Q Consensus 303 ~~l~dP~p 310 (519)
.....|++
T Consensus 224 q~~~~~v~ 231 (581)
T TIGR00475 224 QAQNQDVE 231 (581)
T ss_pred EECCccCC
Confidence 98777765
No 19
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=3.8e-21 Score=200.29 Aligned_cols=213 Identities=23% Similarity=0.311 Sum_probs=154.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc---CccccccccE-EEEecCceeEEEEcCCCCc------hh-H----HHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPI-TIVSGKQRRLQFVECPNDI------NG-M----IDCA 136 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~i-ti~~~~~~rl~fIDtPGdl------~s-m----ld~a 136 (519)
+....|+++|.||||||||+|+|++..-. ....+....+ .++...+.++.||||||.. .. | +.++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 34569999999999999999999986311 0111111111 1334456789999999952 11 2 3457
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..||++|||+|++.++......++..++..+.|.+ +|+||+|+... .+.++.+.+. .......+|++||++|
T Consensus 130 ~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I-lViNKiDl~~~--~~~~~~~~l~-----~~~~~~~i~~iSAktg 201 (339)
T PRK15494 130 HSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI-FLLNKIDIESK--YLNDIKAFLT-----ENHPDSLLFPISALSG 201 (339)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEEhhcCccc--cHHHHHHHHH-----hcCCCcEEEEEeccCc
Confidence 89999999999998887776778888887788876 58999998642 2333333332 2234578999999988
Q ss_pred C------------------cCChhHHHHHH-HHHHhhcCCCCccccCC---CeEEEEEEEecCCccccccCCCCCceEEE
Q 010060 217 G------------------KYSKREIRNLA-RFISVMKFPPLSWRTSH---PYVLVDRFEDVTPPERVRMNNKCDRNVTI 274 (519)
Q Consensus 217 ~------------------~Y~~~ei~~Ll-R~I~~~~~r~~~wR~~~---PYvladr~edit~~~~i~~~~~~~~~l~v 274 (519)
. .|+++.+++.. +|++.+++|+..++..+ ||.++..++.+.. .+ ++.+.
T Consensus 202 ~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~------~~--~~~~~- 272 (339)
T PRK15494 202 KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWED------LK--DKSVK- 272 (339)
T ss_pred cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEE------cC--CCeEE-
Confidence 5 58888888877 89999999998887776 9998888876632 11 23333
Q ss_pred EEEEEeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 275 YGYLRGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 275 ~GyVRG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
|++.++ +.+|+-+|+|.||-.|++|+.
T Consensus 273 ---i~~~i~v~~~sqk~iiiG~~g~~ik~i~~ 301 (339)
T PRK15494 273 ---INQVIVVSRESYKTIILGKNGSKIKEIGA 301 (339)
T ss_pred ---EEEEEEECCCCceeEEEcCCcHHHHHHHH
Confidence 667776 999999999999999999985
No 20
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.86 E-value=9.1e-20 Score=194.18 Aligned_cols=229 Identities=24% Similarity=0.282 Sum_probs=154.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc-cCccccccccEEEEe--------------------------c------Cce
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPITIVS--------------------------G------KQR 118 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~iti~~--------------------------~------~~~ 118 (519)
.+.++|+++|++++|||||+++|.+..+ +......+| +|+.. . ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg-~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRG-ISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcC-ceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4568999999999999999999987532 111110111 11110 0 146
Q ss_pred eEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHH
Q 010060 119 RLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRL 194 (519)
Q Consensus 119 rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~L 194 (519)
.++|+||||+ +. .|+.++..+|++|||+|++.++ ..++.++|..+...|++.+|+|+||+|+... .......+.+
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-EKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-HHHHHHHHHH
Confidence 8999999996 33 4888899999999999999987 7888999998888898888889999999853 2222333334
Q ss_pred HHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEE
Q 010060 195 KHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTI 274 (519)
Q Consensus 195 k~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v 274 (519)
...+...+....++|++||++| .++..|..+|....+.+....+..+.+.+++...+..+... ..+. ...++
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g-----~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~--~~~~-~G~Vv 231 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHN-----ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTP--PEKL-KGGVI 231 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCC-----CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcc--ccCC-ceeEE
Confidence 4333222234678999999977 56778888887765544322233345677777665332110 0011 23578
Q ss_pred EEEEEeEEeecCcEEEE-ecC-----C-------CeEEEeeecCCCCCC
Q 010060 275 YGYLRGCNLKKGIKVHI-AGV-----G-------DYSLAGVTGLADPCP 310 (519)
Q Consensus 275 ~GyVRG~~Lk~~~~VhI-pG~-----G-------df~I~~I~~l~dP~p 310 (519)
+|.|..+.+++|+.|.| |+. | ..+|++|.....|++
T Consensus 232 ~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~ 280 (406)
T TIGR03680 232 GGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVE 280 (406)
T ss_pred EEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECC
Confidence 99999999999999988 552 1 247888887665554
No 21
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.86 E-value=1e-19 Score=196.02 Aligned_cols=224 Identities=20% Similarity=0.223 Sum_probs=159.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc---cC---------------c-----cc-----cccccEEE------EecC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT---KH---------------N-----VP-----EVRGPITI------VSGK 116 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~---------------~-----v~-----~~~G~iti------~~~~ 116 (519)
+.+.++|+++|++++|||||+.+|+.... +. . +. +...++|+ +...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45678999999999999999999987421 00 0 00 01112333 2345
Q ss_pred ceeEEEEcCCCC--c-hhHHHHhhccCEEEEEEeCCCCC-------cccHHHHHHHHHhcCCCeEEEEEEccCCC---CC
Q 010060 117 QRRLQFVECPND--I-NGMIDCAKIADLALLLIDGSYGF-------EMETFEFLNLMQNHGLPRVMGVLTHLDKF---KD 183 (519)
Q Consensus 117 ~~rl~fIDtPGd--l-~smld~ak~ADlVLLVVDas~g~-------e~et~e~L~~L~~~GiP~VI~VlNKlDl~---~~ 183 (519)
+.+++|+||||+ | ..|+.++..||++|||||+..|+ +.++.+++.++...|+|.+|+|+||+|.. .+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 778999999996 3 35899999999999999999886 47899999999999999988899999943 24
Q ss_pred HHHHHHHHHHHHHhhhhhcc--CCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEE
Q 010060 184 VKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLV 250 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vla 250 (519)
...+.++.+.++..|....+ ...+++|+||++|. ||.... |+..|....+ |..+ ...|+ +.+
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~t---L~~~l~~~~~-~~~~-~~~p~r~~I 238 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPT---LLEALDTLEP-PKRP-VDKPLRLPL 238 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHH---HHHHHhCCCC-CCcC-CCCCeEEEE
Confidence 46678888888877644333 35889999999885 554433 4444433222 2222 23455 667
Q ss_pred EEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCCCC
Q 010060 251 DRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADPCP 310 (519)
Q Consensus 251 dr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP~p 310 (519)
+++..++ +.| .+++|.|..+.+++|+.|.+...+ ...|++|.....|+.
T Consensus 239 ~~v~~v~----------g~G-tvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~ 288 (446)
T PTZ00141 239 QDVYKIG----------GIG-TVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLA 288 (446)
T ss_pred EEEEecC----------Cce-EEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccC
Confidence 7776542 223 578999999999999999775444 678999987665553
No 22
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=1e-20 Score=192.01 Aligned_cols=211 Identities=23% Similarity=0.278 Sum_probs=147.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC---ccccccccE-EEEecCceeEEEEcCCCCch-----------hHHHHhhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH---NVPEVRGPI-TIVSGKQRRLQFVECPNDIN-----------GMIDCAKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---~v~~~~G~i-ti~~~~~~rl~fIDtPGdl~-----------smld~ak~ 138 (519)
...|+|+|+||||||||+|+|++..-.. ...+..-.+ .+......+++|+||||... .+...+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999863110 000001111 13333457899999999421 23456789
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC-
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG- 217 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~- 217 (519)
||+++||+|++.++......++..+...+.|.+ +|+||+|+..+...+....+.+.+ ..+..++|++||+++.
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~~~~~~l~~~~~~l~~-----~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLVKDKEELLPLLEELSE-----LMDFAEIVPISALKGDN 158 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCCCCHHHHHHHHHHHHh-----hCCCCeEEEecCCCCCC
Confidence 999999999998777777788888887778855 589999998544455555544433 2356789999999873
Q ss_pred -----------------cCChhHHHHHH-HHHHhhcCCCCccccCC---CeEEEEEEEecCCccccccCCCCCceEEEEE
Q 010060 218 -----------------KYSKREIRNLA-RFISVMKFPPLSWRTSH---PYVLVDRFEDVTPPERVRMNNKCDRNVTIYG 276 (519)
Q Consensus 218 -----------------~Y~~~ei~~Ll-R~I~~~~~r~~~wR~~~---PYvladr~edit~~~~i~~~~~~~~~l~v~G 276 (519)
.|+.+.+++.. ++++.+.+|+..+...+ ||.++..++.+.. . +.+
T Consensus 159 v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~------~----~~~---- 224 (292)
T PRK00089 159 VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEE------R----GLV---- 224 (292)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEE------C----CeE----
Confidence 34444444433 56666666665555544 9999888877631 1 233
Q ss_pred EEEeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 277 YLRGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 277 yVRG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
+|++.++ +.+|+-+|+|.||-.|++|+.
T Consensus 225 ~i~~~i~v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 225 RIEATIYVERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred EEEEEEEEccCCceeEEEeCCcHHHHHHHH
Confidence 3667777 999999999999999999984
No 23
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=2.1e-19 Score=192.11 Aligned_cols=223 Identities=22% Similarity=0.297 Sum_probs=154.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc---cC-------------c-------c------ccccccEEE------Eec
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT---KH-------------N-------V------PEVRGPITI------VSG 115 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~-------------~-------v------~~~~G~iti------~~~ 115 (519)
+.+.++|+|+|++|+|||||+++|+...- .. . + ...+| +|+ +..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG-~T~d~~~~~~~~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERG-VTIDLAHKKFET 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcC-ccceeeeEEEec
Confidence 45678999999999999999999996421 00 0 0 00122 222 234
Q ss_pred CceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCC--CCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHH
Q 010060 116 KQRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSY--GFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRK 189 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~--g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~ 189 (519)
.+..+.||||||+ +. .++.++..||++|||+|++. ++..++.+++.++...+.|.+++|+||+|+.. +...+..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence 5778999999995 43 47788899999999999998 88888888888888889887888999999975 2334455
Q ss_pred HHHHHHHhhhhhcc--CCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEec
Q 010060 190 TKQRLKHRFWTEIY--DGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDV 256 (519)
Q Consensus 190 ~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edi 256 (519)
..+.+...+....+ ...++|++||++|. ||.. ..|+..|... +.+..+ ...|+ +.++++..+
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g---~~L~~~l~~~-~~~~~~-~~~p~r~~i~~~~~~ 236 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNG---PTLLEALDNL-KPPEKP-TDKPLRIPIQDVYSI 236 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccH---HHHHHHHhcC-CCCccc-cCCCcEEEEEEEEee
Confidence 55666554432222 24689999999874 5654 3344444432 223222 23465 566776554
Q ss_pred CCccccccCCCCCceEEEEEEEEeEEeecCcEEEE-ecCCCeEEEeeecCCCCCC
Q 010060 257 TPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHI-AGVGDYSLAGVTGLADPCP 310 (519)
Q Consensus 257 t~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhI-pG~Gdf~I~~I~~l~dP~p 310 (519)
. +.| .+++|+|..+.+++|+.+.| |+.-...|++|.....|++
T Consensus 237 ~----------g~G-~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~ 280 (425)
T PRK12317 237 S----------GVG-TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELP 280 (425)
T ss_pred C----------CCe-EEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccC
Confidence 2 233 57899999999999999976 5544789999987665553
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.85 E-value=2.7e-19 Score=190.91 Aligned_cols=230 Identities=23% Similarity=0.243 Sum_probs=155.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc-cCccccccccEEEEec---------------------------C-----c
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPITIVSG---------------------------K-----Q 117 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~iti~~~---------------------------~-----~ 117 (519)
..+.++|+++|+.++|||||+.+|.+.+. +......+| +|+..+ . .
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg-~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG-ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC-cEEEecccccccccccccCccccccccccccccccccccc
Confidence 46779999999999999999999977531 111111122 222110 0 2
Q ss_pred eeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHH
Q 010060 118 RRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQR 193 (519)
Q Consensus 118 ~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~ 193 (519)
.+++|+||||+ |. .++.++..+|++|+|+|++.++ ..++.+++..+...+++.+++|+||+|+.... ......+.
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~-~~~~~~~~ 163 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE-RALENYEQ 163 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch-hHHHHHHH
Confidence 57999999996 33 4788888999999999999887 77888888888888888777899999998532 22233334
Q ss_pred HHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEE
Q 010060 194 LKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVT 273 (519)
Q Consensus 194 Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~ 273 (519)
++..+...+....++|++||++| .++..|...|....+.+.......+.+.+++++.+..+... . .. ....+
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g-----~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~-~-~~-~~G~V 235 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHK-----VNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTP-P-EK-LKGGV 235 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCC-----cCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCcc-c-cC-CcceE
Confidence 44333222234678999999977 57788888887765544333222234677777665432110 0 01 12347
Q ss_pred EEEEEEeEEeecCcEEEEecCCC-------------eEEEeeecCCCCCC
Q 010060 274 IYGYLRGCNLKKGIKVHIAGVGD-------------YSLAGVTGLADPCP 310 (519)
Q Consensus 274 v~GyVRG~~Lk~~~~VhIpG~Gd-------------f~I~~I~~l~dP~p 310 (519)
++|+|..+.+++|+.+.|...+. ..|++|+....|++
T Consensus 236 v~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~ 285 (411)
T PRK04000 236 IGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVE 285 (411)
T ss_pred EEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECC
Confidence 89999999999999998854432 37888886665553
No 25
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.5e-19 Score=185.78 Aligned_cols=223 Identities=19% Similarity=0.261 Sum_probs=160.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc------------------ccC-----------ccccccccEEE------Eec
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY------------------TKH-----------NVPEVRGPITI------VSG 115 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~------------------Tr~-----------~v~~~~G~iti------~~~ 115 (519)
..|..+++++||+++|||||+.+|+... .+. .....+| +|+ +..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerG-vTi~~~~~~fet 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERG-VTIDVAHSKFET 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcc-eEEEEEEEEeec
Confidence 4677899999999999999999999752 000 0001123 444 245
Q ss_pred CceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCC-------CcccHHHHHHHHHhcCCCeEEEEEEccCCC-CCH
Q 010060 116 KQRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYG-------FEMETFEFLNLMQNHGLPRVMGVLTHLDKF-KDV 184 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g-------~e~et~e~L~~L~~~GiP~VI~VlNKlDl~-~~~ 184 (519)
.+.+++++||||+ |. .|+.++.+||++||||||+.+ ...|+.|++-+++..|+..+|+++||+|.+ +++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 6778999999995 44 599999999999999999876 677899999999999999999999999998 477
Q ss_pred HHHHHHHHHHHHhhhhhccC--CceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCeEE-EE
Q 010060 185 KKLRKTKQRLKHRFWTEIYD--GAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPYVL-VD 251 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~--~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvl-ad 251 (519)
+++.+++..+...+....+. ..+++|+||..|. ||... .|+..|....+.+-. ...|+.+ +.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~Gp---TLleaLd~~~~p~~~--~d~Plr~pI~ 237 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGP---TLLEALDQLEPPERP--LDKPLRLPIQ 237 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCC---hHHHHHhccCCCCCC--CCCCeEeEee
Confidence 78889988888744333333 5789999999986 67644 444444433332211 3457754 22
Q ss_pred EEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEE-ecCCCeEEEeeecCCCCCC
Q 010060 252 RFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHI-AGVGDYSLAGVTGLADPCP 310 (519)
Q Consensus 252 r~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhI-pG~Gdf~I~~I~~l~dP~p 310 (519)
.+..++ ..+ .+.+|.|..+.+++|+.|.+ |+.-.-+|++|+....|.+
T Consensus 238 ~v~~i~----------~~g-tv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~ 286 (428)
T COG5256 238 DVYSIS----------GIG-TVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEIS 286 (428)
T ss_pred eEEEec----------CCc-eEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccc
Confidence 332221 134 45678999999999999966 5555778999987755443
No 26
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.83 E-value=1.3e-18 Score=185.46 Aligned_cols=219 Identities=19% Similarity=0.193 Sum_probs=148.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc---ccCc----------------------ccc-----ccccEEE------EecCce
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY---TKHN----------------------VPE-----VRGPITI------VSGKQR 118 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~~----------------------v~~-----~~G~iti------~~~~~~ 118 (519)
++|+|+||+|+|||||+++|+..+ ++.. +.+ ...++|+ +...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 379999999999999999998653 1100 000 0111222 235577
Q ss_pred eEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHHHHHHH
Q 010060 119 RLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRKTKQRL 194 (519)
Q Consensus 119 rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~~kk~L 194 (519)
++.|+||||+ |. .|+.++..||++|||+|+..|+..++.+++.++...|+|.+|+|+||+|++. +...+.++.+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 8999999995 43 5888999999999999999999999999999999889998888999999974 233344555555
Q ss_pred HHhhhhhccCCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccc
Q 010060 195 KHRFWTEIYDGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVR 263 (519)
Q Consensus 195 k~~f~~e~~~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~ 263 (519)
..++....+...+++|+||++|. ||.. ..|+.+|....+ +... ...|+ +.++++.....
T Consensus 161 ~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g---~tL~~~L~~~~~-~~~~-~~~p~r~~i~~v~~~~~----- 230 (406)
T TIGR02034 161 LAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSG---PTLLEILETVEV-ERDA-QDLPLRFPVQYVNRPNL----- 230 (406)
T ss_pred HHHHHHcCCCCccEEEeecccCCCCcccccCCCccch---hHHHHHHHhcCC-CCCc-CCCCcccceEEEeecCC-----
Confidence 54432222345689999999984 4532 335555544322 2222 23355 34444432100
Q ss_pred cCCCCCceEEEEEEEEeEEeecCcEEEE-ecCCCeEEEeeecCCCCC
Q 010060 264 MNNKCDRNVTIYGYLRGCNLKKGIKVHI-AGVGDYSLAGVTGLADPC 309 (519)
Q Consensus 264 ~~~~~~~~l~v~GyVRG~~Lk~~~~VhI-pG~Gdf~I~~I~~l~dP~ 309 (519)
....++|+|..+.+++|+.|.| |+.-...|++|.....|+
T Consensus 231 ------~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~ 271 (406)
T TIGR02034 231 ------DFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDL 271 (406)
T ss_pred ------CcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCccc
Confidence 0123679999999999999975 554467899998776655
No 27
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.82 E-value=5.7e-20 Score=184.90 Aligned_cols=217 Identities=22% Similarity=0.304 Sum_probs=150.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc----------cccCccccccccEEEEecCceeEEEEcCCCC------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH----------YTKHNVPEVRGPITIVSGKQRRLQFVECPND------------ 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~----------~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd------------ 128 (519)
+.....|||||.||+|||||.|.+++. ||++.+. | +.+....+++|+||||-
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~il---g---i~ts~eTQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRIL---G---IITSGETQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeee---E---EEecCceEEEEecCCcccccchhhhHHHH
Confidence 456789999999999999999999997 3443332 3 56777899999999993
Q ss_pred ---chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHh-cCCCeEEEEEEccCCCCCHHHHHHHHHHHHH--------
Q 010060 129 ---INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN-HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKH-------- 196 (519)
Q Consensus 129 ---l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~-~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~-------- 196 (519)
+...++++..||+|++|+|++..-..-...+|.+|.. ..+|.++ |+||+|..+....+...++.|..
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~l-vmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSIL-VMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCcee-eccchhcchhhhHHhhhHHhccccccchhhh
Confidence 2235678899999999999986433334467777765 4688775 89999998765444444433321
Q ss_pred ----hhh--------h---hccCCceEEEEecccCC------------------cCChhHHHHHH-HHHHhhcCCCCccc
Q 010060 197 ----RFW--------T---EIYDGAKLFYLSGLIHG------------------KYSKREIRNLA-RFISVMKFPPLSWR 242 (519)
Q Consensus 197 ----~f~--------~---e~~~~~kVf~lSAl~g~------------------~Y~~~ei~~Ll-R~I~~~~~r~~~wR 242 (519)
.|. . .|..+..+|++||++|. .|+..-.+.-. ++||.+.+|+..+.
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd 301 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLD 301 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHh
Confidence 110 0 13446679999999985 24443333333 67777777766554
Q ss_pred cCC---CeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeec
Q 010060 243 TSH---PYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 243 ~~~---PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~ 304 (519)
..+ ||-+..++.++. +.+ +|.+.|.+-|... +..+...|+|.|+-.|++|+.
T Consensus 302 ~~pqEVPY~lq~~i~~w~------e~~--~g~l~I~~~v~~p--K~s~~klliGkgG~ki~qI~~ 356 (379)
T KOG1423|consen 302 HLPQEVPYNLQVRILSWK------ERP--AGVLFIQVEVVCP--KNSQKKLLIGKGGKKISQIGT 356 (379)
T ss_pred hCccccCcceEEEEEEee------ecC--CcEEEEEEEEEcC--CCcceeEEEcCCCccHHHHHH
Confidence 444 999888887762 222 4566655443322 778999999999999999974
No 28
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.82 E-value=2.4e-18 Score=186.74 Aligned_cols=223 Identities=18% Similarity=0.189 Sum_probs=151.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc---cC-----------------c-----ccc-----ccccEEE------Eec
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT---KH-----------------N-----VPE-----VRGPITI------VSG 115 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~-----------------~-----v~~-----~~G~iti------~~~ 115 (519)
.++++|+|+|++|+|||||+++|+..+- +. . +.+ ...++|+ +..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 5668999999999999999999997631 10 0 000 0112232 234
Q ss_pred CceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHHHH
Q 010060 116 KQRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRKTK 191 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~~k 191 (519)
...+++||||||+ |. .|+.++..||++|||||+..|+..++.+++.++...|++.+|+|+||+|+.. +...+.+++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 5678999999996 33 4788899999999999999999999998888888889888888999999984 333455555
Q ss_pred HHHHHhhhhh-ccCCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCc
Q 010060 192 QRLKHRFWTE-IYDGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPP 259 (519)
Q Consensus 192 k~Lk~~f~~e-~~~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~ 259 (519)
+.+...+... +....+++|+||++|. ||.. ..|+..|... +.+..+ ...|+ +.++++.....
T Consensus 185 ~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G---~tLl~~L~~i-~~~~~~-~~~p~r~~I~~v~~~~~- 258 (474)
T PRK05124 185 EDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSG---PTLLEVLETV-DIQRVV-DAQPFRFPVQYVNRPNL- 258 (474)
T ss_pred HHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccch---hhHHHHHhhc-CCCCCC-CCCCceeeEEEEEecCC-
Confidence 5555433211 1346889999999985 4533 3344444432 222222 23355 44555532210
Q ss_pred cccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCCCC
Q 010060 260 ERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADPCP 310 (519)
Q Consensus 260 ~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP~p 310 (519)
....+.|+|..+.+++|+.+.|...| ...|++|.....|+.
T Consensus 259 ----------~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~ 300 (474)
T PRK05124 259 ----------DFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLE 300 (474)
T ss_pred ----------cccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCcccc
Confidence 01125799999999999998665444 688999998776664
No 29
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.82 E-value=1.9e-18 Score=186.22 Aligned_cols=224 Identities=20% Similarity=0.224 Sum_probs=157.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc---cCc--------------------ccc-----ccccEEE------EecC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT---KHN--------------------VPE-----VRGPITI------VSGK 116 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~~--------------------v~~-----~~G~iti------~~~~ 116 (519)
+.|+++|+++||.++|||||+.+|+..+. +.. +.+ ...++|+ +...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46789999999999999999999986421 000 000 1123443 2345
Q ss_pred ceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCC-Cc------ccHHHHHHHHHhcCCCeEEEEEEccCCCC---C
Q 010060 117 QRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYG-FE------METFEFLNLMQNHGLPRVMGVLTHLDKFK---D 183 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g-~e------~et~e~L~~L~~~GiP~VI~VlNKlDl~~---~ 183 (519)
++.++|+||||+ |. .|+.++..||.+|||+|++.| ++ .++.+++.++...|+|.+|+|+||+|+.. .
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 789999999996 43 588999999999999999876 43 68889999999999999888999999862 2
Q ss_pred HHHHHHHHHHHHHhhhhhcc--CCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEE
Q 010060 184 VKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLV 250 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vla 250 (519)
...+.++.++++.++....+ ...+++|+||++|. ||... .|+..|.... .|..+ ...|+ +.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~---tLl~~l~~i~-~p~~~-~~~plr~~I 238 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGP---TLLEALDQIN-EPKRP-SDKPLRLPL 238 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchH---HHHHHHhhcC-CCccc-cCCCcEEEE
Confidence 34567777777776643322 24789999999985 45433 3445444322 23322 23466 445
Q ss_pred EEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCCCC
Q 010060 251 DRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADPCP 310 (519)
Q Consensus 251 dr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP~p 310 (519)
+.+..++ +.| .+++|.|..+.+++|+.|.+...| -..|++|+....|++
T Consensus 239 ~~v~~~~----------g~G-~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~ 288 (447)
T PLN00043 239 QDVYKIG----------GIG-TVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQ 288 (447)
T ss_pred EEEEEeC----------CcE-EEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeC
Confidence 5554431 233 568999999999999999775544 578999987666553
No 30
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=5.5e-19 Score=168.09 Aligned_cols=155 Identities=21% Similarity=0.335 Sum_probs=117.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc----------------Ccccc-----ccccEEEEe--cCceeEEEEcCCCCc-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK----------------HNVPE-----VRGPITIVS--GKQRRLQFVECPNDI- 129 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr----------------~~v~~-----~~G~iti~~--~~~~rl~fIDtPGdl- 129 (519)
-++|+|+|++++|||||+++|+..... ..... +.-...... ...+.++|+||||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 479999999999999999999986411 00000 111122233 567899999999973
Q ss_pred --hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc-C--
Q 010060 130 --NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY-D-- 204 (519)
Q Consensus 130 --~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~-~-- 204 (519)
..++.++..+|++|+|||+..|+..++.+++..+...++| +|+|+||+|++ ...+.+..+.+...|+.... .
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred eeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccCcc
Confidence 3488899999999999999999999999999999999999 66799999998 45667777777766654432 2
Q ss_pred -CceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 205 -GAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 205 -~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
..++|++||++| .++..|+..|....|
T Consensus 160 ~~~~vi~~Sa~~g-----~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 160 EIVPVIPISALTG-----DGIDELLEALVELLP 187 (188)
T ss_dssp STEEEEEEBTTTT-----BTHHHHHHHHHHHS-
T ss_pred ccceEEEEecCCC-----CCHHHHHHHHHHhCc
Confidence 468999999977 578888887776544
No 31
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=9.4e-19 Score=168.94 Aligned_cols=162 Identities=24% Similarity=0.266 Sum_probs=117.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC--------------ccccccccEEE------EecCceeEEEEcCCCC--c-
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH--------------NVPEVRGPITI------VSGKQRRLQFVECPND--I- 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--------------~v~~~~G~iti------~~~~~~rl~fIDtPGd--l- 129 (519)
|.++|+++|++++|||||+++|++...+. .....+| +|+ +...+.+++|+||||. +
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg-~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARG-ITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcC-ccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 34789999999999999999999752110 0001122 332 2345678999999995 3
Q ss_pred hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCce
Q 010060 130 NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAK 207 (519)
Q Consensus 130 ~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~k 207 (519)
..++.++..||++|+|+|+..++..++.+++..+...|+|.+|+|+||+|++...+.+..+.+.++..+..-.+ ...+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~ 159 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTP 159 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCe
Confidence 34888899999999999999999999999999999999998878999999986444445566667666543222 4689
Q ss_pred EEEEecccCCcC----Chh-HHHHHHHHHHhhc
Q 010060 208 LFYLSGLIHGKY----SKR-EIRNLARFISVMK 235 (519)
Q Consensus 208 Vf~lSAl~g~~Y----~~~-ei~~LlR~I~~~~ 235 (519)
++|+||++|... +.. .+..|+..|....
T Consensus 160 iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~ 192 (195)
T cd01884 160 IVRGSALKALEGDDPNKWVKKILELLDALDSYI 192 (195)
T ss_pred EEEeeCccccCCCCCCcchhcHhHHHHHHHhCC
Confidence 999999997421 111 2566666665443
No 32
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=4.1e-18 Score=182.36 Aligned_cols=224 Identities=20% Similarity=0.247 Sum_probs=154.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc---ccCc--------------------ccc-----ccccEEE------EecC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY---TKHN--------------------VPE-----VRGPITI------VSGK 116 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~~--------------------v~~-----~~G~iti------~~~~ 116 (519)
+.+.++|+++|++|+|||||+++|+... +... +.+ ...++|+ +...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4677899999999999999999999632 1000 000 0112332 2345
Q ss_pred ceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCC---CcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHH
Q 010060 117 QRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYG---FEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRK 189 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g---~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~ 189 (519)
...+.||||||+ +. .++.++..||++|||+|++.+ ...++.+++.++...+.+.+|+|+||+|+.. +...+..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 678999999995 33 477788999999999999988 6667777777777778888888999999974 3344555
Q ss_pred HHHHHHHhhhhhcc--CCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEec
Q 010060 190 TKQRLKHRFWTEIY--DGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDV 256 (519)
Q Consensus 190 ~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edi 256 (519)
..+.+...+....+ ...+++++||++|. ||. ...|+..|.... .+. .....|+ +.++++..+
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~---g~~l~~~l~~~~-~~~-~~~~~p~r~~i~~v~~~ 238 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYK---GKTLLEALDALE-PPE-KPTDKPLRIPIQDVYSI 238 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCcccc---chHHHHHHhcCC-CCC-CccCCCcEEEEEEEEec
Confidence 56666554432222 34789999999985 444 235666664432 222 1233465 567777655
Q ss_pred CCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecC-CCeEEEeeecCCCCCC
Q 010060 257 TPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGV-GDYSLAGVTGLADPCP 310 (519)
Q Consensus 257 t~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~-Gdf~I~~I~~l~dP~p 310 (519)
+ +.| .+++|+|..+.+++|+.|.|... -...|++|.....|++
T Consensus 239 ~----------g~G-~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~ 282 (426)
T TIGR00483 239 T----------GVG-TVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIE 282 (426)
T ss_pred C----------CCe-EEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccC
Confidence 2 234 46899999999999999987444 4678999987766654
No 33
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.81 E-value=3.8e-18 Score=191.12 Aligned_cols=224 Identities=17% Similarity=0.186 Sum_probs=152.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc--------------------cCccc----------cccccEEE------Ee
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT--------------------KHNVP----------EVRGPITI------VS 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--------------------r~~v~----------~~~G~iti------~~ 114 (519)
..+.+.|+|+|++|+|||||+++|+.... +..+. +...++|+ +.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34557899999999999999999997521 11110 00112222 23
Q ss_pred cCceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHHH
Q 010060 115 GKQRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRKT 190 (519)
Q Consensus 115 ~~~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~~ 190 (519)
..+.+++|+||||+ +. .|+.++..||++|||||+..|+..++.+++.++...|++.+|+|+||+|++. +...+..+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i 180 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEI 180 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHH
Confidence 45678999999996 33 4888899999999999999999999999999888889888888999999984 33445555
Q ss_pred HHHHHHhhhhhccCCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCc
Q 010060 191 KQRLKHRFWTEIYDGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPP 259 (519)
Q Consensus 191 kk~Lk~~f~~e~~~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~ 259 (519)
...+..++....+...+++|+||++|. ||.. ..|+..|....+ +.. +...|+ +.++++.....
T Consensus 181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g---~tL~~~l~~~~~-~~~-~~~~p~r~~i~~v~~~~~- 254 (632)
T PRK05506 181 VADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEG---PSLLEHLETVEI-ASD-RNLKDFRFPVQYVNRPNL- 254 (632)
T ss_pred HHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccH---hHHHHHHhcCCC-CCC-cCCCCceeeEEEEEecCC-
Confidence 556654432223355789999999885 4433 334445544332 222 234566 44555432110
Q ss_pred cccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCCCC
Q 010060 260 ERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADPCP 310 (519)
Q Consensus 260 ~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP~p 310 (519)
....+.|+|..+.+++|+.+.|...| ...|++|.....|++
T Consensus 255 ----------~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~ 296 (632)
T PRK05506 255 ----------DFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLD 296 (632)
T ss_pred ----------CceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeC
Confidence 11236799999999999999775544 678999987766654
No 34
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6e-19 Score=178.42 Aligned_cols=214 Identities=23% Similarity=0.272 Sum_probs=163.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccc-cc----------------------cEEEE---------ecCcee
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEV-RG----------------------PITIV---------SGKQRR 119 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~-~G----------------------~iti~---------~~~~~r 119 (519)
+|..+|++|||.++|||||..+|.+-.|..--.+. +| .++.. ...-++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999997432111111 00 11110 012478
Q ss_pred EEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHH
Q 010060 120 LQFVECPND--IN-GMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLK 195 (519)
Q Consensus 120 l~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk 195 (519)
+.|+||||+ |. .||.++...|.+||||.|++++ ++||.|+|-.|.-.|+..+|+|-||+|++.. ++..+..++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~-E~AlE~y~qIk 166 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR-ERALENYEQIK 166 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH-HHHHHHHHHHH
Confidence 999999997 33 4999999999999999999775 6799999999999999999999999999964 55566677788
Q ss_pred HhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEE
Q 010060 196 HRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIY 275 (519)
Q Consensus 196 ~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~ 275 (519)
+|+...+..+++++|+||..+ ..+..|..+|...++.|..--...|.|++-|-+|+..|..--+ +-.|. ++-
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~-----~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~--~L~GG-ViG 238 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHK-----ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPE--ELKGG-VIG 238 (415)
T ss_pred HHhcccccCCCceeeehhhhc-----cCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHH--HccCc-eec
Confidence 888788889999999999854 6888899999999998886666679999999888854422000 01122 467
Q ss_pred EEEEeEEeecCcEEEE-ecC
Q 010060 276 GYLRGCNLKKGIKVHI-AGV 294 (519)
Q Consensus 276 GyVRG~~Lk~~~~VhI-pG~ 294 (519)
|.+-.+.|++|+.+.| ||.
T Consensus 239 Gsl~~G~l~vGDEIEIrPGi 258 (415)
T COG5257 239 GSLVQGVLRVGDEIEIRPGI 258 (415)
T ss_pred ceeeeeeEecCCeEEecCCe
Confidence 7777788899999966 663
No 35
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3e-18 Score=174.40 Aligned_cols=234 Identities=21% Similarity=0.316 Sum_probs=175.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc-----cccCccccccccEEE-------E--------ecCceeEEEEcCCCC---ch
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH-----YTKHNVPEVRGPITI-------V--------SGKQRRLQFVECPND---IN 130 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~-----~Tr~~v~~~~G~iti-------~--------~~~~~rl~fIDtPGd---l~ 130 (519)
..+|+|+||.++|||||.++|... +++++.+..+| +|+ . .+..-+++||||||+ +.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRg-iTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERG-ITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccc-eeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 479999999999999999999875 23333332222 222 1 123456799999997 44
Q ss_pred hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH---HHHHHHHHHHHHhhhhhcc-CCc
Q 010060 131 GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV---KKLRKTKQRLKHRFWTEIY-DGA 206 (519)
Q Consensus 131 smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~---k~l~~~kk~Lk~~f~~e~~-~~~ 206 (519)
.++.++.+.|+.++|||+..|...++.|+|-+-+. -.+..|+|+||+|..... ..+.+..+.+.+.+.+..+ +.+
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~ 164 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNS 164 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCC
Confidence 57889999999999999999999999998876544 345566799999998652 3355666666666654444 459
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEE-EEEecCCccccccCCCCCceEEEEEEEEeEEeec
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVD-RFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKK 285 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvlad-r~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~ 285 (519)
+++++||+.| .+.++.+.+|...|.+.++.|.+ ....|++++. .+..+ ++.|+ +++|+|-.+.++.
T Consensus 165 PI~~vsa~~G-~~~~~~i~eL~e~l~s~if~P~R-d~~gpflm~vDHCF~I----------KGQGT-V~TGTvl~G~~~l 231 (522)
T KOG0461|consen 165 PIVEVSAADG-YFKEEMIQELKEALESRIFEPKR-DEEGPFLMAVDHCFAI----------KGQGT-VLTGTVLRGVLRL 231 (522)
T ss_pred ceeEEecCCC-ccchhHHHHHHHHHHHhhcCCCc-CCCCCeEEEeeeeEEe----------ccCce-EEeeeEEEeEEec
Confidence 9999999877 56678889999999998888763 2345886654 44444 34554 6799999999999
Q ss_pred CcEEEEecCCCeEEEeeecCCCCCCCChhhhhccc-ccccceeeeccCCCCceEE
Q 010060 286 GIKVHIAGVGDYSLAGVTGLADPCPLPSAAKKKGL-RDKEKLFYAPMSGLGDLLY 339 (519)
Q Consensus 286 ~~~VhIpG~Gdf~I~~I~~l~dP~pl~~~~k~r~l-~~k~~~~yap~s~~~~~~~ 339 (519)
|..|.+|- |.+++|+|+| .+|+++-.|.|.+.-|+.+
T Consensus 232 n~~iE~PA-----------------L~e~rkVKslqmf~~~vtsa~~GdR~g~cV 269 (522)
T KOG0461|consen 232 NTEIEFPA-----------------LNEKRKVKSLQMFKQRVTSAAAGDRAGFCV 269 (522)
T ss_pred CcEEeecc-----------------cchhhhhhhHHHHhhhhhhhhcccceeeee
Confidence 99999986 5566778888 7888888999999888765
No 36
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.8e-18 Score=170.20 Aligned_cols=220 Identities=22% Similarity=0.294 Sum_probs=166.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--------------ccccccccEEEE------ecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--------------NVPEVRGPITIV------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--------------~v~~~~G~iti~------~~~~~rl~fIDtPGd-- 128 (519)
..|..+|+.|||.++|||||..+|+....+. +-...+ +|||. ...++.+.++||||+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r-GITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR-GITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc-CceeccceeEEecCCceEEeccCCChHH
Confidence 5778999999999999999999999863211 111123 36664 345789999999996
Q ss_pred -chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CC
Q 010060 129 -INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DG 205 (519)
Q Consensus 129 -l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~ 205 (519)
+.+||.++..+|.+|||++|..|..+||.+++-+.+..|+|.+++++||+|++.+.+.+..+..+++..+....+ ..
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~ 167 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDD 167 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 456999999999999999999999999999999999999999999999999998777666666666665543333 46
Q ss_pred ceEEEEecccCCc---CChhHHHHHHHHHHhhcCCCCccccCCCeEE-EEEEEecCCccccccCCCCCceEEEEEEEEeE
Q 010060 206 AKLFYLSGLIHGK---YSKREIRNLARFISVMKFPPLSWRTSHPYVL-VDRFEDVTPPERVRMNNKCDRNVTIYGYLRGC 281 (519)
Q Consensus 206 ~kVf~lSAl~g~~---Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvl-adr~edit~~~~i~~~~~~~~~l~v~GyVRG~ 281 (519)
.||+.-||+.... --...+..|+..+.+.++.|.. ....||++ ++.++.++ .+.++++|.|.-+
T Consensus 168 ~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-~~dkPflmpvEdvfsIs-----------grgtvvtGrVeRG 235 (394)
T COG0050 168 TPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-DIDKPFLMPVEDVFSIS-----------GRGTVVTGRVERG 235 (394)
T ss_pred cceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-cccccccccceeeEEEc-----------CceeEEEEEEeee
Confidence 7888888775421 1234567788888777776642 23458865 45555552 2567899999999
Q ss_pred EeecCcEEEEecCCCeEEEeee
Q 010060 282 NLKKGIKVHIAGVGDYSLAGVT 303 (519)
Q Consensus 282 ~Lk~~~~VhIpG~Gdf~I~~I~ 303 (519)
.+++|+.+.|+|....+-..++
T Consensus 236 ~lkvg~eveivG~~~~~kttvt 257 (394)
T COG0050 236 ILKVGEEVEIVGIKETQKTTVT 257 (394)
T ss_pred eeccCCEEEEecccccceeEEE
Confidence 9999999999999865544444
No 37
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=9.6e-18 Score=185.83 Aligned_cols=224 Identities=21% Similarity=0.278 Sum_probs=147.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc----cccccccEEEEe-c----------------CceeEEEEcCCCC--c
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIVS-G----------------KQRRLQFVECPND--I 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~~-~----------------~~~rl~fIDtPGd--l 129 (519)
.|++|+|+|++|||||||+++|++...... ++..-|...+.. . ....++||||||+ +
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 356899999999999999999998631100 110011111100 0 0124899999996 5
Q ss_pred hh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH-------------HHHHHHHH--
Q 010060 130 NG-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK-------------KLRKTKQR-- 193 (519)
Q Consensus 130 ~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k-------------~l~~~kk~-- 193 (519)
.. +..++..||++|||+|++.++.+++++++..++..++| +|+|+||+|+..... +...+...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 55 34567899999999999999999999999999988999 456899999974211 11111111
Q ss_pred ---------HHH-hhhh-------hccCCceEEEEecccCCcCChhHHHHHHHHHHhhc----CCCCccccCCCe-EEEE
Q 010060 194 ---------LKH-RFWT-------EIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMK----FPPLSWRTSHPY-VLVD 251 (519)
Q Consensus 194 ---------Lk~-~f~~-------e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~----~r~~~wR~~~PY-vlad 251 (519)
|.. -|.. ++....+++|+||++| .++.+|+..|.... ...+......|. +.+.
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG-----eGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~ 236 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG-----EGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTIL 236 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC-----CChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEE
Confidence 111 1111 2445689999999988 45556665443211 122222223343 4444
Q ss_pred EEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeecCCCCCCCCh
Q 010060 252 RFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPLPS 313 (519)
Q Consensus 252 r~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~l~dP~pl~~ 313 (519)
+.... ++-| .+++|.|..+.|++|+.+.+.+.++....+|..+-+|-||.+
T Consensus 237 e~~~~----------~G~G-~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e 287 (590)
T TIGR00491 237 EVKEE----------TGLG-MTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEE 287 (590)
T ss_pred EEEEc----------CCCc-eEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCcccc
Confidence 44433 1233 577999999999999999998888877888999999999877
No 38
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2e-18 Score=176.45 Aligned_cols=249 Identities=17% Similarity=0.185 Sum_probs=178.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc-------------ccC--c-----cc----------cccccEEE------Eec
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY-------------TKH--N-----VP----------EVRGPITI------VSG 115 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~-------------Tr~--~-----v~----------~~~G~iti------~~~ 115 (519)
..+++++.||.++.||||||.+|+..+ +.. . +. +-..+||| ++.
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999999862 000 0 00 00224665 356
Q ss_pred CceeEEEEcCCCCch---hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHHHH
Q 010060 116 KQRRLQFVECPNDIN---GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRKTK 191 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~---smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~~k 191 (519)
.++.|++.||||+-+ .|..++.-||++|++|||..|+..||..+.-++...|++++++++||+||+. +++.+.++.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHH
Confidence 789999999999733 5999999999999999999999999998777777789999999999999986 666777777
Q ss_pred HHHHHhhhhhccCCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccc
Q 010060 192 QRLKHRFWTEIYDGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPER 261 (519)
Q Consensus 192 k~Lk~~f~~e~~~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~ 261 (519)
..+..+...-......++|+||+.|. ||....+...+..+....- +...|+-+...+ +
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~-----~~~~~~RfPVQ~--V----- 231 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADD-----RSAKAFRFPVQY--V----- 231 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhcccccc-----ccccceeeceEE--e-----
Confidence 77665443223455688999999986 8887777766655443322 122233222221 1
Q ss_pred cccCCCCCceEEEEEEEEeEEeecCcEEEE-ecCCCeEEEeeecCCCCCCCChhhhhcccccccceeeeccCCCCceEEe
Q 010060 262 VRMNNKCDRNVTIYGYLRGCNLKKGIKVHI-AGVGDYSLAGVTGLADPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYD 340 (519)
Q Consensus 262 i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhI-pG~Gdf~I~~I~~l~dP~pl~~~~k~r~l~~k~~~~yap~s~~~~~~~d 340 (519)
+.|.. ...-+.|.|.++.+++|+.|.+ |......|++|....... .+ ..|+|+. .+++
T Consensus 232 --~Rp~~-dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~--~~-------------A~aG~aV--tl~L- 290 (431)
T COG2895 232 --NRPNL-DFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGEL--AQ-------------ASAGEAV--TLVL- 290 (431)
T ss_pred --cCCCC-cccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCch--hh-------------ccCCceE--EEEE-
Confidence 11111 1234678999999999997755 555588999998775533 22 6788887 7888
Q ss_pred cCceEEecCCccc
Q 010060 341 KDAVYININDHFV 353 (519)
Q Consensus 341 ~d~~yi~~~~~~~ 353 (519)
.|.|+|..|+-.+
T Consensus 291 ~deidisRGd~i~ 303 (431)
T COG2895 291 ADEIDISRGDLIV 303 (431)
T ss_pred cceeecccCcEEE
Confidence 8899999997543
No 39
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.2e-17 Score=177.68 Aligned_cols=223 Identities=24% Similarity=0.367 Sum_probs=159.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc------------------cC-----------ccccccccEEE------EecC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT------------------KH-----------NVPEVRGPITI------VSGK 116 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T------------------r~-----------~v~~~~G~iti------~~~~ 116 (519)
.+.+..+|+||+++|||||+.+|+.... +. .-...+| +|. +...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerG-vTm~v~~~~fes~ 253 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERG-VTMDVKTTWFESK 253 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcc-eeEEeeeEEEecC
Confidence 4568999999999999999999997410 00 0001123 332 3456
Q ss_pred ceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCC-----CCc--ccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHH
Q 010060 117 QRRLQFVECPND--ING-MIDCAKIADLALLLIDGSY-----GFE--METFEFLNLMQNHGLPRVMGVLTHLDKFK-DVK 185 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~-----g~e--~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k 185 (519)
...++++|+||+ |.. |+.++..||+++|||||+. ||+ .|+.|++.+|+..|+..+|+++||+|++. ++.
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHH
Confidence 789999999994 554 9999999999999999984 344 36889999999999999999999999985 677
Q ss_pred HHHHHHHHHHHhhhh-hcc--CCceEEEEecccCC-------------cCChhHHHHHHHHHHhhcCCCCccccCCCeEE
Q 010060 186 KLRKTKQRLKHRFWT-EIY--DGAKLFYLSGLIHG-------------KYSKREIRNLARFISVMKFPPLSWRTSHPYVL 249 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~-e~~--~~~kVf~lSAl~g~-------------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvl 249 (519)
++.+++..|..++.. ..+ ...+++|+||++|. ||....+...+ ...++..-. ...|+.+
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~i---d~~~~p~~~--~~kPl~l 408 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQI---DSFKIPERP--IDKPLRL 408 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHH---hhccCCCCc--ccCCeEE
Confidence 889999999887722 222 34489999999996 56554444443 332221111 2338865
Q ss_pred EEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEE-ecCCCeEEEeeecCCCCCC
Q 010060 250 VDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHI-AGVGDYSLAGVTGLADPCP 310 (519)
Q Consensus 250 adr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhI-pG~Gdf~I~~I~~l~dP~p 310 (519)
.. .++... + ...++|+|.|..|.+..||++.| ++.-+++|+.|..-..||-
T Consensus 409 tI--sdi~~~------~--~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~ 460 (603)
T KOG0458|consen 409 TI--SDIYPL------P--SSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKT 460 (603)
T ss_pred Eh--hheeec------C--CCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcce
Confidence 32 122110 1 12389999999999999999966 6666999999997766664
No 40
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.3e-16 Score=177.15 Aligned_cols=222 Identities=21% Similarity=0.241 Sum_probs=140.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEE------EEec--------C----------ceeEEEEcCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT------IVSG--------K----------QRRLQFVECPN 127 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it------i~~~--------~----------~~rl~fIDtPG 127 (519)
..|++|+|+|++|+|||||+++|.+..... ...|.+| .+.. . -..++||||||
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~---~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAA---KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc---CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 445689999999999999999998753110 0111111 1110 0 01379999999
Q ss_pred C--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH-------------------
Q 010060 128 D--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK------------------- 185 (519)
Q Consensus 128 d--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k------------------- 185 (519)
+ +.. +..++..+|++|||+|++.++.+++++++..+...++| +++|+||+|+.....
T Consensus 81 ~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~ 159 (586)
T PRK04004 81 HEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQ 159 (586)
T ss_pred hHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHH
Confidence 6 444 34567899999999999999999999999999889999 556899999862111
Q ss_pred -HHHHHHHHHHHhhh-----h-------hccCCceEEEEecccCCcCChhHHHHHHHHHHh---h-cCCCCccccCCCe-
Q 010060 186 -KLRKTKQRLKHRFW-----T-------EIYDGAKLFYLSGLIHGKYSKREIRNLARFISV---M-KFPPLSWRTSHPY- 247 (519)
Q Consensus 186 -~l~~~kk~Lk~~f~-----~-------e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~---~-~~r~~~wR~~~PY- 247 (519)
.+.+....+...+. . ++....+++++||++| .++.+|+..+.. . .+.++......|.
T Consensus 160 ~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG-----eGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~ 234 (586)
T PRK04004 160 QELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG-----EGIPDLLMVLAGLAQRYLEERLKIDVEGPGK 234 (586)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC-----CChHHHHHHHHHHHHHHHHHhhccCCCCCeE
Confidence 01111111211211 1 2345678999999987 444455433321 1 2223332223343
Q ss_pred EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeecCCCCCCCCh
Q 010060 248 VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPLPS 313 (519)
Q Consensus 248 vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~l~dP~pl~~ 313 (519)
+.+..+... ++.| .+++|.|..+.|++|+.+.+.+.++....+|..+.+|-|+.+
T Consensus 235 ~~V~ev~~~----------~g~G-~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e 289 (586)
T PRK04004 235 GTVLEVKEE----------RGLG-TTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDE 289 (586)
T ss_pred EEEEEEEEe----------CCCc-eEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhh
Confidence 333343322 1234 568999999999999999887776644456666667767766
No 41
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=3.8e-17 Score=157.91 Aligned_cols=158 Identities=26% Similarity=0.310 Sum_probs=111.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc-cCccccccccEEEEe------c--------------------------------
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPITIVS------G-------------------------------- 115 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~iti~~------~-------------------------------- 115 (519)
++|+|+||.++|||||+.+|.+.+. .......+| +++.. .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERN-ITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcC-CceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 4799999999999999999987632 111111111 11110 0
Q ss_pred -CceeEEEEcCCCC--c-hhHHHHhhccCEEEEEEeCCCC-CcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHH
Q 010060 116 -KQRRLQFVECPND--I-NGMIDCAKIADLALLLIDGSYG-FEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKT 190 (519)
Q Consensus 116 -~~~rl~fIDtPGd--l-~smld~ak~ADlVLLVVDas~g-~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~ 190 (519)
...++.||||||+ + ..++.++..+|++|||+|++.+ ...++.+++..+...+++.+|+|+||+|+... ..+...
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~-~~~~~~ 158 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE-EQALEN 158 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH-HHHHHH
Confidence 1268999999996 3 3478889999999999999974 56677888888877788777789999999853 333444
Q ss_pred HHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCC
Q 010060 191 KQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPL 239 (519)
Q Consensus 191 kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~ 239 (519)
.+.++..+........++|++||++| .++..|..+|....+.|.
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g-----~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLK-----YNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCC-----CCHHHHHHHHHHhCCCCC
Confidence 45555444222234678999999977 678888888887766553
No 42
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.2e-17 Score=164.82 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=165.4
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc--------------ccCccccccccEEEE------ecCceeEEEEcCCCC-
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY--------------TKHNVPEVRGPITIV------SGKQRRLQFVECPND- 128 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr~~v~~~~G~iti~------~~~~~rl~fIDtPGd- 128 (519)
...|..+|+.|||.++|||||..+|++.- ++.+....+| |||. ....+.+.-+||||+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRG-ITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARG-ITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhcc-ceEeeeeeeeeccccccccCCCCchH
Confidence 46788999999999999999999999851 1111111233 6664 345788999999996
Q ss_pred --chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--C
Q 010060 129 --INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--D 204 (519)
Q Consensus 129 --l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~ 204 (519)
+..|+.++...|.+||||.|+.|..+||.|+|-+.+.-|++.+++.+||.|++.+++.+.-+.-++++.+....+ +
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 445999999999999999999999999999999999999999999999999998777666555556655433334 4
Q ss_pred CceEEEEecccCC-----cCChhHHHHHHHHHHhhcCCCCccccCCCeEE-EEEEEecCCccccccCCCCCceEEEEEEE
Q 010060 205 GAKLFYLSGLIHG-----KYSKREIRNLARFISVMKFPPLSWRTSHPYVL-VDRFEDVTPPERVRMNNKCDRNVTIYGYL 278 (519)
Q Consensus 205 ~~kVf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvl-adr~edit~~~~i~~~~~~~~~l~v~GyV 278 (519)
..||+.=||+..- ....+.+..|+..+.+-++-|.+ ....||++ ++.+..++. +..+++|.|
T Consensus 209 ~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R-~~~~pFl~pie~vfsI~G-----------RGTVvtGrl 276 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER-DLDKPFLLPIEDVFSIPG-----------RGTVVTGRL 276 (449)
T ss_pred CCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc-ccCCCceeehhheeeecC-----------CceEEEEEE
Confidence 5688877776532 33445577777777776666653 22348865 455555532 446789999
Q ss_pred EeEEeecCcEEEEecCCC---eEEEeeec
Q 010060 279 RGCNLKKGIKVHIAGVGD---YSLAGVTG 304 (519)
Q Consensus 279 RG~~Lk~~~~VhIpG~Gd---f~I~~I~~ 304 (519)
.-+.|+.|+.+.|.|.+- ..|+.|+.
T Consensus 277 ERG~lKkG~e~eivG~~~~lkttvtgiem 305 (449)
T KOG0460|consen 277 ERGVLKKGDEVEIVGHNKTLKTTVTGIEM 305 (449)
T ss_pred eecccccCCEEEEeccCcceeeEeehHHH
Confidence 999999999999999984 34555554
No 43
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.75 E-value=1.6e-16 Score=176.48 Aligned_cols=215 Identities=20% Similarity=0.207 Sum_probs=149.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc---cC-cc----------ccccccEEE------EecCceeEEEEcCCCC--chh-
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT---KH-NV----------PEVRGPITI------VSGKQRRLQFVECPND--ING- 131 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T---r~-~v----------~~~~G~iti------~~~~~~rl~fIDtPGd--l~s- 131 (519)
++|+|+||+++|||||+++|+..+. +. .+ ...+| +|+ +.+.+.++.||||||+ |..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerG-iTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERG-ITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCC-ccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 6899999999999999999997421 11 01 11122 333 3466789999999996 543
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc----CCce
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY----DGAK 207 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~----~~~k 207 (519)
+..+++.||.+|||+|++.|...++..++..+...|+|.+ +|+||+|+... ...++...+...|..... -..+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~~~a--~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPSA--RPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCCCCc--CHHHHHHHHHHHHHhhccccccccCc
Confidence 6778999999999999999999999999999999999965 58999998642 223344444443321111 1357
Q ss_pred EEEEecccCCc-----CChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeE
Q 010060 208 LFYLSGLIHGK-----YSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGC 281 (519)
Q Consensus 208 Vf~lSAl~g~~-----Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~ 281 (519)
++++||++|.. ....++..|+..|....+.|... ...|+ +++..+...+ .-| .+++|.|..+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~-~~~pl~~~V~~i~~d~----------~~G-rv~~gRV~sG 225 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD-LDEPLQMLVTNLDYDE----------YLG-RIAIGRVHRG 225 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC-CCCCEEEEEEEEEeeC----------CCc-eEEEEEEEeC
Confidence 99999998731 11235778888888888877532 24466 4555554332 124 3579999999
Q ss_pred EeecCcEEEEecCCC----eEEEeeecC
Q 010060 282 NLKKGIKVHIAGVGD----YSLAGVTGL 305 (519)
Q Consensus 282 ~Lk~~~~VhIpG~Gd----f~I~~I~~l 305 (519)
.|++|+.|.+...++ ..|++|...
T Consensus 226 ~lk~G~~V~~~~~~~~~~~~kV~~i~~~ 253 (594)
T TIGR01394 226 TVKKGQQVALMKRDGTIENGRISKLLGF 253 (594)
T ss_pred EEccCCEEEEecCCCceeEEEEEEEEEc
Confidence 999999998876533 456677654
No 44
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=1e-16 Score=145.87 Aligned_cols=151 Identities=23% Similarity=0.309 Sum_probs=101.2
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcc------ccccccEEEEecC-ceeEEEEcCCCC--ch-hHHHHhhccCEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNV------PEVRGPITIVSGK-QRRLQFVECPND--IN-GMIDCAKIADLALLL 145 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v------~~~~G~iti~~~~-~~rl~fIDtPGd--l~-smld~ak~ADlVLLV 145 (519)
+|+|+|.+|||||||+++|++....... .++...+...... ...+.||||||. +. .+...+..||++|+|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 7999999999999999999974211000 0000011112222 568999999996 33 366678899999999
Q ss_pred EeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHH
Q 010060 146 IDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 146 VDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
+|++.++..++.+.+..+...+.+.+++|+||+|+... .......+.+.+.+........++|++||+++ .++.
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~~v~ 155 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE-DWLELVEEEIRELLAGTFLADAPIFPVSAVTG-----EGIE 155 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH-HHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC-----cCHH
Confidence 99998877777777777776677457779999999753 22333344444444322234678999999977 5666
Q ss_pred HHHHHHH
Q 010060 226 NLARFIS 232 (519)
Q Consensus 226 ~LlR~I~ 232 (519)
.+...|.
T Consensus 156 ~l~~~l~ 162 (164)
T cd04171 156 ELKEYLD 162 (164)
T ss_pred HHHHHHh
Confidence 6665553
No 45
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.5e-16 Score=167.20 Aligned_cols=214 Identities=20% Similarity=0.274 Sum_probs=165.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccc-cccccEEEE------ecCceeEEEEcCCCC---chhHHHHhhccCEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EVRGPITIV------SGKQRRLQFVECPND---INGMIDCAKIADLALL 144 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~~G~iti~------~~~~~rl~fIDtPGd---l~smld~ak~ADlVLL 144 (519)
.+|+..|+.++|||||+.+|.+..+...-. ..+| +|+- .-....+.|||+||+ +.+|+.++...|.++|
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG-~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRG-ITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcC-ceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 378999999999999999999975432222 2233 3332 123568999999996 5669999999999999
Q ss_pred EEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 145 LIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 145 VVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
||++.+|+..++.|+|.+|...|+++.++|+||+|+..+ .++.+..+.+.+.+. +..+++|++|+.+| +++
T Consensus 80 vV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-~r~e~~i~~Il~~l~---l~~~~i~~~s~~~g-----~GI 150 (447)
T COG3276 80 VVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-ARIEQKIKQILADLS---LANAKIFKTSAKTG-----RGI 150 (447)
T ss_pred EEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-HHHHHHHHHHHhhcc---cccccccccccccC-----CCH
Confidence 999999999999999999999999998889999999964 456666666655442 67899999999877 677
Q ss_pred HHHHHHHHhhcCCCCccccCCCeEE-EEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEee
Q 010060 225 RNLARFISVMKFPPLSWRTSHPYVL-VDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGV 302 (519)
Q Consensus 225 ~~LlR~I~~~~~r~~~wR~~~PYvl-adr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I 302 (519)
.+|-..|....- +..-....|+.+ +|+++.+. +-| ++|+|++-.+..++|+.+.+.+.| ..+|++|
T Consensus 151 ~~Lk~~l~~L~~-~~e~d~~~~fri~IDraFtVK----------GvG-TVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsI 218 (447)
T COG3276 151 EELKNELIDLLE-EIERDEQKPFRIAIDRAFTVK----------GVG-TVVTGTVLSGEVKVGDKLYLSPINKEVRVRSI 218 (447)
T ss_pred HHHHHHHHHhhh-hhhhccCCceEEEEeeEEEec----------ccc-EEEEeEEeeeeEEECCEEEEecCCCeEEEEee
Confidence 777766665542 222233457755 89998773 334 578999999999999999998888 7899999
Q ss_pred ecCCCCCC
Q 010060 303 TGLADPCP 310 (519)
Q Consensus 303 ~~l~dP~p 310 (519)
.....|..
T Consensus 219 q~~d~d~~ 226 (447)
T COG3276 219 QAHDVDVE 226 (447)
T ss_pred eecCcchh
Confidence 98776553
No 46
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=3.8e-17 Score=172.79 Aligned_cols=140 Identities=22% Similarity=0.424 Sum_probs=112.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEE-EEecCceeEEEEcCCCC--------------chhHH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PIT-IVSGKQRRLQFVECPND--------------INGMI 133 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~it-i~~~~~~rl~fIDtPGd--------------l~sml 133 (519)
.|+.|||||.||+|||||+|+|+++. |..+....| +|. .+....+.+.||||.|- +..++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee-R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE-RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc-eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 68999999999999999999999973 212222222 122 23567889999999982 33477
Q ss_pred HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC-HHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 134 DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD-VKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~-~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.++..||+++||+||+.|+..|...++.++...|.+.|| |+||+|++.. ...+.+.++.+...| .+..+++++++|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI-vvNKWDl~~~~~~~~~~~k~~i~~~l--~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI-VVNKWDLVEEDEATMEEFKKKLRRKL--PFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE-EEEccccCCchhhHHHHHHHHHHHHh--ccccCCeEEEEE
Confidence 788999999999999999999999999999999999665 8999999874 345677777777755 677899999999
Q ss_pred cccC
Q 010060 213 GLIH 216 (519)
Q Consensus 213 Al~g 216 (519)
|+++
T Consensus 333 A~~~ 336 (444)
T COG1160 333 ALTG 336 (444)
T ss_pred ecCC
Confidence 9987
No 47
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.73 E-value=5.9e-16 Score=171.73 Aligned_cols=213 Identities=17% Similarity=0.216 Sum_probs=135.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc----cccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLAL 143 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVL 143 (519)
.+.|++|+|+|++|+|||||+++|.+...... ++.-.|.+++.......++||||||+ +..+ ..++..+|++|
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34567999999999999999999987521110 11001111121222348999999996 5554 45789999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh-hh-hhccCCceEEEEecccCCcCCh
Q 010060 144 LLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR-FW-TEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 144 LVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~-f~-~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
||+|++.+..+++.+++..+...++| +|+|+||+|+... ....+.+.+... +. ..+....++|++||++|
T Consensus 164 LVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~--~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG----- 235 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEA--NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG----- 235 (587)
T ss_pred EEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccC--CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC-----
Confidence 99999999999999999998888999 5568999999642 112333333321 11 12233468999999987
Q ss_pred hHHHHHHHHHHhhc-CCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEE
Q 010060 222 REIRNLARFISVMK-FPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSL 299 (519)
Q Consensus 222 ~ei~~LlR~I~~~~-~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I 299 (519)
.++..|+..|.... ...+......|. ..+.+.... ++.| .+++|.|..+.|++|+.+.+.. .--+|
T Consensus 236 eGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~----------~g~G-~v~~~~V~~GtL~~Gd~iv~~~-~~~kV 303 (587)
T TIGR00487 236 DGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLD----------KGRG-PVATVLVQSGTLRVGDIVVVGA-AYGRV 303 (587)
T ss_pred CChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEe----------CCCc-EEEEEEEEeCEEeCCCEEEECC-CccEE
Confidence 56666665554321 111111112333 344444322 1223 5689999999999999986643 22345
Q ss_pred Eeee
Q 010060 300 AGVT 303 (519)
Q Consensus 300 ~~I~ 303 (519)
+.|.
T Consensus 304 r~l~ 307 (587)
T TIGR00487 304 RAMI 307 (587)
T ss_pred EEEE
Confidence 5554
No 48
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.6e-16 Score=167.83 Aligned_cols=219 Identities=21% Similarity=0.242 Sum_probs=148.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc----cccccccEEEEec--CceeEEEEcCCCC--chhHH-HHhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIVSG--KQRRLQFVECPND--INGMI-DCAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~~~--~~~rl~fIDtPGd--l~sml-d~ak~ADlV 142 (519)
..|++|+|+||.++|||||+..|-+...... ++.--|.+.+... ....++|+||||+ |..|. ++++.+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567999999999999999999988742211 1111233444433 3578999999997 66654 478999999
Q ss_pred EEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHH-hhh-hhccCCceEEEEecccCCcCC
Q 010060 143 LLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKH-RFW-TEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 143 LLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~-~f~-~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|||++.+|+.+||.|-++.+++.|+|.+| ++||+|++.. ....++.+|.+ -|. .+|.....++|+||++|
T Consensus 83 ILVVa~dDGv~pQTiEAI~hak~a~vP~iV-AiNKiDk~~~--np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg---- 155 (509)
T COG0532 83 ILVVAADDGVMPQTIEAINHAKAAGVPIVV-AINKIDKPEA--NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG---- 155 (509)
T ss_pred EEEEEccCCcchhHHHHHHHHHHCCCCEEE-EEecccCCCC--CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC----
Confidence 999999999999999999999999999665 8999999853 23344444433 222 33456678999999988
Q ss_pred hhHHHHHH---HHHHhhcCCCCccccCC---CeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecC
Q 010060 221 KREIRNLA---RFISVMKFPPLSWRTSH---PYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGV 294 (519)
Q Consensus 221 ~~ei~~Ll---R~I~~~~~r~~~wR~~~---PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~ 294 (519)
.++.+|+ ..++... .+..+... ..++-.+.+ ++-|. +++--|..+.|+.|+.+.+-+.
T Consensus 156 -~Gi~eLL~~ill~aev~--elka~~~~~a~gtviE~~~d------------kG~G~-vatviv~~GtL~~GD~iv~g~~ 219 (509)
T COG0532 156 -EGIDELLELILLLAEVL--ELKANPEGPARGTVIEVKLD------------KGLGP-VATVIVQDGTLKKGDIIVAGGE 219 (509)
T ss_pred -CCHHHHHHHHHHHHHHH--hhhcCCCCcceEEEEEEEec------------cCCCc-eEEEEEecCeEecCCEEEEccC
Confidence 4555555 3333322 22222112 333332321 12232 2333456777999999988888
Q ss_pred CCeEEEeeecCCCCCCCCh
Q 010060 295 GDYSLAGVTGLADPCPLPS 313 (519)
Q Consensus 295 Gdf~I~~I~~l~dP~pl~~ 313 (519)
.+-...-+..+..|.|+.+
T Consensus 220 ~g~I~t~v~~~~~~i~~a~ 238 (509)
T COG0532 220 YGRVRTMVDDLGKPIKEAG 238 (509)
T ss_pred CCceEEeehhcCCCccccC
Confidence 8888888888888877654
No 49
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.72 E-value=8.6e-17 Score=155.96 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=99.1
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc-----------------------ccc-----ccccEEE------EecCceeEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN-----------------------VPE-----VRGPITI------VSGKQRRLQ 121 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-----------------------v~~-----~~G~iti------~~~~~~rl~ 121 (519)
+|+|+|++|+|||||+++|+.....-. +.+ ...++|+ +...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999987531100 000 0011222 234567899
Q ss_pred EEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC-HHHHHHHHHHHHHh
Q 010060 122 FVECPND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD-VKKLRKTKQRLKHR 197 (519)
Q Consensus 122 fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~-~k~l~~~kk~Lk~~ 197 (519)
|+||||. +. .++.++..||++|||+|++.++..++..++.++...+.|.+|+|+||+|+... ...+..+...++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999995 33 47788899999999999999988888777777777888888889999999742 22334444444433
Q ss_pred hhhhccCCceEEEEecccCC
Q 010060 198 FWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 198 f~~e~~~~~kVf~lSAl~g~ 217 (519)
+..-.....++|++||++|.
T Consensus 161 ~~~~~~~~~~ii~iSA~~g~ 180 (208)
T cd04166 161 AAKLGIEDITFIPISALDGD 180 (208)
T ss_pred HHHcCCCCceEEEEeCCCCC
Confidence 32111234679999999883
No 50
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=6.2e-16 Score=172.06 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=143.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc---cc----Cccc------cccccEEEE-----------ecCceeEEEEcCCCC-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY---TK----HNVP------EVRGPITIV-----------SGKQRRLQFVECPND- 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr----~~v~------~~~G~iti~-----------~~~~~rl~fIDtPGd- 128 (519)
.++|+|+|++++|||||+++|+..+ ++ ..+. ..+| +|+. .+....+.||||||+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerG-iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERG-ITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcC-CCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 4799999999999999999999753 11 0010 1122 2221 122367899999996
Q ss_pred -chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc
Q 010060 129 -ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 129 -l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
+.. +..++..||++|||+|++.+.+.++.+.+..+...++| +|+|+||+|+.... ...+.+.+...+ .....
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~l---g~~~~ 155 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEVI---GLDAS 155 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHHh---CCCcc
Confidence 443 66778999999999999999988888776666667888 55689999986421 123333444332 12234
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeE--EEEEEEecCCccccccCCCCCceEEEEEEEEeEEee
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYV--LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLK 284 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYv--ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk 284 (519)
.+|++||++| .++..|+..|....+.|... ...|+. +.+.+.+ + ....+++|.|..+.|+
T Consensus 156 ~vi~vSAktG-----~GI~~Lle~I~~~lp~p~~~-~~~pl~~~V~~~~~d-~-----------~~G~v~~~rV~sG~lk 217 (595)
T TIGR01393 156 EAILASAKTG-----IGIEEILEAIVKRVPPPKGD-PDAPLKALIFDSHYD-N-----------YRGVVALVRVFEGTIK 217 (595)
T ss_pred eEEEeeccCC-----CCHHHHHHHHHHhCCCCCCC-CCCCeEEEEEEEEEe-C-----------CCcEEEEEEEECCEEe
Confidence 6899999987 67888998888887777543 234552 3333321 1 1245689999999999
Q ss_pred cCcEEEEecCC-CeEEEeeecC
Q 010060 285 KGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 285 ~~~~VhIpG~G-df~I~~I~~l 305 (519)
.|+.|.+...| .+.|.+|...
T Consensus 218 ~Gd~v~~~~~~~~~~v~~i~~~ 239 (595)
T TIGR01393 218 PGDKIRFMSTGKEYEVDEVGVF 239 (595)
T ss_pred cCCEEEEecCCCeeEEeEEEEe
Confidence 99999877666 6788999843
No 51
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.72 E-value=9.5e-16 Score=170.73 Aligned_cols=208 Identities=24% Similarity=0.299 Sum_probs=143.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc---cC----cc------ccccccEEE------E-----ecCceeEEEEcCCCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT---KH----NV------PEVRGPITI------V-----SGKQRRLQFVECPND 128 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~----~v------~~~~G~iti------~-----~~~~~rl~fIDtPGd 128 (519)
..++|+|+||.++|||||+.+|+..+. +. .+ ...+| +|+ + .+....+.||||||+
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerG-iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERG-ITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcC-CcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 357999999999999999999997531 10 01 00112 222 1 123567999999996
Q ss_pred --chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCC
Q 010060 129 --ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDG 205 (519)
Q Consensus 129 --l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~ 205 (519)
+.. +..++..||.+|||+|++.+++.++.+.+..+...++| +|+|+||+|+... ....+.+.+...+ ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a--~~~~v~~ei~~~l---g~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAA--DPERVKQEIEDVI---GIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCcc--cHHHHHHHHHHHh---CCCc
Confidence 443 56778899999999999999998888877777778999 5568999998642 1233334444332 1123
Q ss_pred ceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeE--EEEEEEecCCccccccCCCCCceEEEEEEEEeEEe
Q 010060 206 AKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYV--LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNL 283 (519)
Q Consensus 206 ~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYv--ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~L 283 (519)
..++++||++| .++..|+..|....+.|.. ....|.. +.+.+.+. ...++++|.|..+.|
T Consensus 159 ~~vi~iSAktG-----~GI~~Ll~~I~~~lp~P~~-~~~~pl~~~Vfd~~~d~------------~~G~v~~~rV~sG~L 220 (600)
T PRK05433 159 SDAVLVSAKTG-----IGIEEVLEAIVERIPPPKG-DPDAPLKALIFDSWYDN------------YRGVVVLVRVVDGTL 220 (600)
T ss_pred ceEEEEecCCC-----CCHHHHHHHHHHhCccccC-CCCCCceEEEEEEEecC------------CCceEEEEEEEcCEE
Confidence 46899999977 6788899888887776653 2234542 33333221 123567999999999
Q ss_pred ecCcEEEEecCC-CeEEEeeecC
Q 010060 284 KKGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 284 k~~~~VhIpG~G-df~I~~I~~l 305 (519)
++|+.|.+...| .+.|.+|...
T Consensus 221 k~Gd~i~~~~~~~~~~V~~i~~~ 243 (600)
T PRK05433 221 KKGDKIKMMSTGKEYEVDEVGVF 243 (600)
T ss_pred ecCCEEEEecCCceEEEEEeecc
Confidence 999999776655 6889999843
No 52
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1.7e-16 Score=151.18 Aligned_cols=159 Identities=21% Similarity=0.323 Sum_probs=108.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhc-----cccCccccccc--------cEEEE-----------ecCceeEEEEcCCCC--
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH-----YTKHNVPEVRG--------PITIV-----------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~-----~Tr~~v~~~~G--------~iti~-----------~~~~~rl~fIDtPGd-- 128 (519)
++|+++|++|+|||||+++|+.. ++.......+| .+++. ......++||||||.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 37999999999999999999973 11111111111 11111 112568999999996
Q ss_pred c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHH----hhhhhcc
Q 010060 129 I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKH----RFWTEIY 203 (519)
Q Consensus 129 l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~----~f~~e~~ 203 (519)
+ ..++.++..+|++++|+|++.+...++.+++..+...+.| +++|+||+|+.... ......+.+++ .+.....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~-~~~~~~~~~~~~l~~~~~~~~~ 158 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEE-ERERKIEKMKKKLQKTLEKTRF 158 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHH-HHHHHHHHHHHHHHHHHHhcCc
Confidence 2 3366778899999999999988877777666666667887 45689999998432 22233333333 2211123
Q ss_pred CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCc
Q 010060 204 DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLS 240 (519)
Q Consensus 204 ~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~ 240 (519)
...++|++||++| .++..|...|..+++-|+.
T Consensus 159 ~~~~vi~iSa~~g-----~gi~~L~~~l~~~~~~~~~ 190 (192)
T cd01889 159 KNSPIIPVSAKPG-----GGEAELGKDLNNLIVLPLI 190 (192)
T ss_pred CCCCEEEEeccCC-----CCHHHHHHHHHhccccccc
Confidence 5678999999977 6888899999888887654
No 53
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=5.6e-16 Score=174.89 Aligned_cols=204 Identities=18% Similarity=0.244 Sum_probs=131.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc----cccccccEEEE-e--cCceeEEEEcCCCC--chhHH-HHhhccCE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIV-S--GKQRRLQFVECPND--INGMI-DCAKIADL 141 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~-~--~~~~rl~fIDtPGd--l~sml-d~ak~ADl 141 (519)
..+++|+|+|++|+|||||+++|........ ++...+.+.+. . .....++||||||+ |..|+ .++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4668999999999999999999987532111 11001212211 1 23578999999996 55544 57899999
Q ss_pred EEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh--hhhhccCCceEEEEecccCCcC
Q 010060 142 ALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR--FWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 142 VLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~--f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
+|||+|++.++.+++.+++..+...++| +|+|+||+|+... ....+.+.+... +...+....++|++||++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~--~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG--- 395 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANA--NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG--- 395 (742)
T ss_pred EEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCcccc--CHHHHHHHHHHhccchHhhCCCceEEEEECCCC---
Confidence 9999999999999999999999989999 5568999999742 223344444321 1112233478999999987
Q ss_pred ChhHHHHHHHHHHhhcCC-CCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEec
Q 010060 220 SKREIRNLARFISVMKFP-PLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAG 293 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~r-~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG 293 (519)
.++..|+..|...... .+......|. .+.-++..-+ ... ..+++|.|..+.|+.|+.+.+..
T Consensus 396 --~GIdeLle~I~~l~e~~~lk~~~~~~~-~g~V~e~~iD--------~~~-G~V~~~~V~sGtLr~GD~vv~g~ 458 (742)
T CHL00189 396 --TNIDKLLETILLLAEIEDLKADPTQLA-QGIILEAHLD--------KTK-GPVATILVQNGTLHIGDIIVIGT 458 (742)
T ss_pred --CCHHHHHHhhhhhhhhhcccCCCCCCc-eEEEEEEEEc--------CCC-ceEEEEEEEcCEEecCCEEEECC
Confidence 5677777665543211 1111111222 1111221111 112 35678999999999999986543
No 54
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.1e-16 Score=168.92 Aligned_cols=215 Identities=25% Similarity=0.312 Sum_probs=159.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc---cC----------ccccccccEEEEe---------cCceeEEEEcCCCC--c
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT---KH----------NVPEVRGPITIVS---------GKQRRLQFVECPND--I 129 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~----------~v~~~~G~iti~~---------~~~~rl~fIDtPGd--l 129 (519)
-++++||.|.++|||||..+|+..+. .+ .+...+| ||+.+ +...-+.+|||||+ |
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERG-ITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERG-ITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcC-cEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 48999999999999999999998752 10 1112233 55531 22367899999996 5
Q ss_pred hh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceE
Q 010060 130 NG-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKL 208 (519)
Q Consensus 130 ~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kV 208 (519)
.. +...+..||.+||||||+.|+..||...+-.+...|+. +|.|+||+|+.. ...+.+...+...| ..+.+++
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~--adpe~V~~q~~~lF---~~~~~~~ 212 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPS--ADPERVENQLFELF---DIPPAEV 212 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCC--CCHHHHHHHHHHHh---cCCccce
Confidence 44 67778889999999999999999999777666777887 667999999975 23455666665545 3467799
Q ss_pred EEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCe--EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecC
Q 010060 209 FYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPY--VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKG 286 (519)
Q Consensus 209 f~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY--vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~ 286 (519)
+++||++| -.+..++..|....|.|..-+ ..|+ ++.|.+.|. -+.+..+|+|-.+.++.|
T Consensus 213 i~vSAK~G-----~~v~~lL~AII~rVPpP~~~~-d~plr~Lifds~yD~------------y~G~I~~vrv~~G~vrkG 274 (650)
T KOG0462|consen 213 IYVSAKTG-----LNVEELLEAIIRRVPPPKGIR-DAPLRMLIFDSEYDE------------YRGVIALVRVVDGVVRKG 274 (650)
T ss_pred EEEEeccC-----ccHHHHHHHHHhhCCCCCCCC-CcchHHHhhhhhhhh------------hcceEEEEEEeeeeeecC
Confidence 99999988 566678888888888776543 3466 455555432 235678899999999999
Q ss_pred cEEEEecCC-CeEEEeeecC-CCCCCCCh
Q 010060 287 IKVHIAGVG-DYSLAGVTGL-ADPCPLPS 313 (519)
Q Consensus 287 ~~VhIpG~G-df~I~~I~~l-~dP~pl~~ 313 (519)
++|...-.| .|.++.|+.+ |+-|+...
T Consensus 275 dkV~~~~t~~~yev~~vgvm~p~~~~~~~ 303 (650)
T KOG0462|consen 275 DKVQSAATGKSYEVKVVGVMRPEMTPVVE 303 (650)
T ss_pred CEEEEeecCcceEeEEeEEeccCceeeee
Confidence 999877766 6888988865 66666554
No 55
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-16 Score=174.94 Aligned_cols=257 Identities=19% Similarity=0.246 Sum_probs=169.3
Q ss_pred HhhcCCccCCcCCCCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE------e-----------------
Q 010060 58 RRLHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV------S----------------- 114 (519)
Q Consensus 58 Kr~~v~~~~R~~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~------~----------------- 114 (519)
++......++...+...+++||+||+++|||-|+..|.+.... ....|++|-. .
T Consensus 459 ~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVq---egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 459 KRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQ---EGEAGGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred ccCchhhccccchhcCCceEEEeecccccchHHHHHhhccccc---cccccceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 3333344444555666789999999999999999999885211 1111222211 0
Q ss_pred -cCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHH----
Q 010060 115 -GKQRRLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK---- 186 (519)
Q Consensus 115 -~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~---- 186 (519)
..-..+.+|||||+ |.. --.+...||++|||||..+|++++|.+.+++|+....|+|| +|||+|.+..++.
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFiv-ALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIV-ALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEE-eehhhhhhcccccCCCc
Confidence 11235899999996 444 33578899999999999999999999999999999999776 7999998754321
Q ss_pred ---------HHHHHHHHHHhhhh------------hcc-------CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCC
Q 010060 187 ---------LRKTKQRLKHRFWT------------EIY-------DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPP 238 (519)
Q Consensus 187 ---------l~~~kk~Lk~~f~~------------e~~-------~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~ 238 (519)
-..+...++.||.. ++| ...-++|+||.+| +++.+|+.+|.......
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG-----eGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG-----EGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC-----CCcHHHHHHHHHHHHHH
Confidence 12223333333311 111 2345789999977 78888887776544322
Q ss_pred CccccCC-CeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeecCCCCCCCChhhhh
Q 010060 239 LSWRTSH-PYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPLPSAAKK 317 (519)
Q Consensus 239 ~~wR~~~-PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~l~dP~pl~~~~k~ 317 (519)
+.-+... -.+-+.-++.- .+ .+.|+ .|--.+-.+.|+.|+.|.++|.+|..|..|..|..|.||.+ -|+
T Consensus 690 m~~kl~y~~ev~cTVlEVK----vi----eG~Gt-TIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkE-lRV 759 (1064)
T KOG1144|consen 690 MVEKLAYVDEVQCTVLEVK----VI----EGHGT-TIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKE-LRV 759 (1064)
T ss_pred HHHHHhhhhheeeEEEEEE----ee----cCCCc-eEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHh-hcc
Confidence 2111111 00111111110 00 11232 23334556778999999999999999999999999999998 678
Q ss_pred cccccccceeeeccCC
Q 010060 318 KGLRDKEKLFYAPMSG 333 (519)
Q Consensus 318 r~l~~k~~~~yap~s~ 333 (519)
+.-..+++.+-|.++.
T Consensus 760 k~~Y~hhkEvkaA~Gi 775 (1064)
T KOG1144|consen 760 KGTYVHHKEVKAAQGI 775 (1064)
T ss_pred ccceeehhHhhhhccc
Confidence 8888888888887754
No 56
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.70 E-value=1.5e-15 Score=172.61 Aligned_cols=201 Identities=20% Similarity=0.225 Sum_probs=129.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC----ccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLAL 143 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVL 143 (519)
...|++|+|+|++|+|||||+++|.+..... .++...|.+ .+...+..++||||||+ |..|. .++..+|++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~-~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAY-QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEE-EEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3567899999999999999999998642110 011011211 12334678999999996 55544 5789999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHH--hhhhhccCCceEEEEecccCCcCCh
Q 010060 144 LLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKH--RFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 144 LVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~--~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
||+|++.|+.+++.+++..+...++| +|+|+||+|+... ....+...|.. .+...+....++|++||++|
T Consensus 366 LVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a--~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG----- 437 (787)
T PRK05306 366 LVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGA--NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG----- 437 (787)
T ss_pred EEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECcccccc--CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC-----
Confidence 99999999999999999999999999 5669999999642 12233333322 11112234578999999987
Q ss_pred hHHHHHHHHHHhhcC-CCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEE
Q 010060 222 REIRNLARFISVMKF-PPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHI 291 (519)
Q Consensus 222 ~ei~~LlR~I~~~~~-r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhI 291 (519)
.++..|+..|..... .++.-....|. ..+...... +.. ..+++|.|..+.|+.|+.+.+
T Consensus 438 ~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~d----------kg~-G~v~~v~V~sGtLk~Gd~vv~ 498 (787)
T PRK05306 438 EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLD----------KGR-GPVATVLVQNGTLKVGDIVVA 498 (787)
T ss_pred CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEc----------CCC-eEEEEEEEecCeEecCCEEEE
Confidence 456666655542210 01111112232 222222111 112 356889999999999998866
No 57
>PRK10218 GTP-binding protein; Provisional
Probab=99.70 E-value=2.6e-15 Score=166.99 Aligned_cols=215 Identities=17% Similarity=0.171 Sum_probs=148.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc---ccC-----ccc-----cccccEEE------EecCceeEEEEcCCCC--chh-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY---TKH-----NVP-----EVRGPITI------VSGKQRRLQFVECPND--ING- 131 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~-----~v~-----~~~G~iti------~~~~~~rl~fIDtPGd--l~s- 131 (519)
.++|+|+|++++|||||+++|+... .+. .+. ....++|+ +.+.+..+.||||||+ +..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 4799999999999999999999742 111 010 01122443 2456789999999995 544
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh----hccCCce
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT----EIYDGAK 207 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~----e~~~~~k 207 (519)
+..+++.||.+|||+|++.+...++..++..+...|+|.+ +|+||+|+.. .....+.+.+...|.. ......+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~--a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPG--ARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCC--CchhHHHHHHHHHHhccCccccccCCC
Confidence 6678899999999999999999999999999888999975 5899999864 2233444445444422 1112467
Q ss_pred EEEEecccCC-cCCh----hHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeE
Q 010060 208 LFYLSGLIHG-KYSK----REIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGC 281 (519)
Q Consensus 208 Vf~lSAl~g~-~Y~~----~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~ 281 (519)
++++||++|. .+.. .++..|+..|....+.|... ...|+ +++..+...+ .-|+ +.+|.|..+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~-~~~Pl~~~V~k~~~d~----------~~G~-i~~gRV~sG 229 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD-LDGPFQMQISQLDYNS----------YVGV-IGIGRIKRG 229 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC-CCCCeEEEEEeeEecC----------CCcE-EEEEEEEeC
Confidence 9999999883 1211 25778888888888877532 34465 4555554321 1243 578999999
Q ss_pred EeecCcEEEEecC-CC---eEEEeee
Q 010060 282 NLKKGIKVHIAGV-GD---YSLAGVT 303 (519)
Q Consensus 282 ~Lk~~~~VhIpG~-Gd---f~I~~I~ 303 (519)
.|+.|+.|.++.. |. ..|.+|.
T Consensus 230 ~lk~Gd~v~~~~~~~~~~~~rv~~l~ 255 (607)
T PRK10218 230 KVKPNQQVTIIDSEGKTRNAKVGKVL 255 (607)
T ss_pred cCcCCCEEEEecCCCcEeeEEEEEEE
Confidence 9999999988776 33 3455554
No 58
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=7.9e-16 Score=150.48 Aligned_cols=141 Identities=24% Similarity=0.323 Sum_probs=99.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccc---cCc--------------------ccc------ccccEEE------EecCceeE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT---KHN--------------------VPE------VRGPITI------VSGKQRRL 120 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T---r~~--------------------v~~------~~G~iti------~~~~~~rl 120 (519)
+|+|+|++++|||||+.+|+..+. +.. +.+ .+| +|+ +...+.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg-~T~d~~~~~~~~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERG-VTIDVGLAKFETEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCc-cCeecceEEEeeCCeEE
Confidence 489999999999999999986421 000 100 122 222 23457899
Q ss_pred EEEcCCCC--ch-hHHHHhhccCEEEEEEeCCC-------CCcccHHHHHHHHHhcCCCeEEEEEEccCCCC---CHHHH
Q 010060 121 QFVECPND--IN-GMIDCAKIADLALLLIDGSY-------GFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK---DVKKL 187 (519)
Q Consensus 121 ~fIDtPGd--l~-smld~ak~ADlVLLVVDas~-------g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~---~~k~l 187 (519)
.|+||||. +. .++.++..+|++|||||++. +...++.+++..+...+.+++|+|+||+|+.. +...+
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 99999995 33 37788899999999999987 34556777777777778777888999999983 23445
Q ss_pred HHHHHHHHHhhhhhcc--CCceEEEEecccCC
Q 010060 188 RKTKQRLKHRFWTEIY--DGAKLFYLSGLIHG 217 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~ 217 (519)
..+.+.+...+....+ ...+++++||++|.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~ 191 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGD 191 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCC
Confidence 6666666654432222 24789999999985
No 59
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.9e-15 Score=159.27 Aligned_cols=144 Identities=22% Similarity=0.355 Sum_probs=112.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC----ccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLAL 143 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVL 143 (519)
.+.|++|.|+||.++|||||+.+|.+..-.. .++.--|.+++....+.+++|+||||+ |.+|. ++|.++|+++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 6778999999999999999999999874211 222223556665557789999999997 67775 5899999999
Q ss_pred EEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh-h-hhhccCCceEEEEecccCC
Q 010060 144 LLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR-F-WTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 144 LVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~-f-~~e~~~~~kVf~lSAl~g~ 217 (519)
|||.|..|+.+||.|.+..++..++|-| +++||+|... ....+++.+|... + ...+.+...++|+||++|.
T Consensus 230 LVVAadDGVmpQT~EaIkhAk~A~VpiV-vAinKiDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEAIKHAKSANVPIV-VAINKIDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCCccHhHHHHHHHHHhcCCCEE-EEEeccCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 9999999999999999999999999955 5899999764 3345565555431 1 1234567899999999984
No 60
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.66 E-value=8.4e-15 Score=154.30 Aligned_cols=178 Identities=20% Similarity=0.221 Sum_probs=127.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc--------------ccCccccccccEEEE------ecCceeEEEEcCCCC--ch
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY--------------TKHNVPEVRGPITIV------SGKQRRLQFVECPND--IN 130 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr~~v~~~~G~iti~------~~~~~rl~fIDtPGd--l~ 130 (519)
+-++||||.|+++|||||+..|+++. +.+-+...+| ||+. .++..++.++||||+ |.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERG-ITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERG-ITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcC-cEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 34799999999999999999999973 1111222344 6665 356889999999995 55
Q ss_pred h-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc----cCC
Q 010060 131 G-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI----YDG 205 (519)
Q Consensus 131 s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~----~~~ 205 (519)
. +-+.++..|.|||||||.+|..+||...|.-+.++|++.|+ |+||+|... ....++..++-..|..-. --+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIV-VvNKiDrp~--Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV-VINKIDRPD--ARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEE-EEeCCCCCC--CCHHHHHHHHHHHHHHhCCChhhCC
Confidence 4 66788899999999999999999999999999999999875 899999875 233444444433332111 124
Q ss_pred ceEEEEecccCC-----cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEe
Q 010060 206 AKLFYLSGLIHG-----KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFED 255 (519)
Q Consensus 206 ~kVf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~ed 255 (519)
.+++|.||+.|. .-.......|...|....+.|. -....|+ +.+..+++
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-~~~d~PlQ~qvt~Ldy 214 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-GDLDEPLQMQVTQLDY 214 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-CCCCCCeEEEEEeecc
Confidence 689999998773 1233456777788888888876 2334466 44444443
No 61
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=5e-15 Score=135.06 Aligned_cols=152 Identities=20% Similarity=0.348 Sum_probs=101.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc---cCccccccccE-EEEecCceeEEEEcCCCCc---------h-----hHHH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT---KHNVPEVRGPI-TIVSGKQRRLQFVECPNDI---------N-----GMID 134 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~~v~~~~G~i-ti~~~~~~rl~fIDtPGdl---------~-----smld 134 (519)
.|+.|+++|++|+|||||+++|++... ..........+ .........+.+|||||.. . .++.
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 367899999999999999999998631 10000001111 1223345679999999931 1 1344
Q ss_pred HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH-HHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 135 CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV-KKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~-k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+..+|++|+|+|++.+...+...++..+...+.|.+ +|+||+|+.... .......+.+++.+ ......++|++||
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDLVEKDSKTMKEFKKEIRRKL--PFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEeccccCCccHHHHHHHHHHHHhhc--ccccCCceEEEec
Confidence 5678999999999998877766777777777788744 589999998542 33445555555443 1234578999999
Q ss_pred ccCCcCChhHHHHHHHHHH
Q 010060 214 LIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~ 232 (519)
+.+ .++..+...+.
T Consensus 158 ~~~-----~~i~~~~~~l~ 171 (174)
T cd01895 158 LTG-----QGVDKLFDAID 171 (174)
T ss_pred cCC-----CCHHHHHHHHH
Confidence 976 55666665544
No 62
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.66 E-value=4.6e-15 Score=138.14 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=104.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcc---c----------cccccEE------EEecCceeEEEEcCCCC--chh-HH
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNV---P----------EVRGPIT------IVSGKQRRLQFVECPND--ING-MI 133 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v---~----------~~~G~it------i~~~~~~rl~fIDtPGd--l~s-ml 133 (519)
+|+|+|.+|+|||||+|+|++..-.... . .....++ ........++||||||. +.. ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999987321110 0 0001111 12234678999999995 333 55
Q ss_pred HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh-----------c
Q 010060 134 DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE-----------I 202 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e-----------~ 202 (519)
..+..+|++++|+|++.+...+..+++..+...+.| +++|+||+|+... ..+......+.+.+... .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGE-EDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcch-hcHHHHHHHHHHHHccccccchhhhhccc
Confidence 667899999999999988877777888888777888 5568999999852 23333334444333211 1
Q ss_pred cCCceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 203 YDGAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 203 ~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
....++|++||++| .++.++...|....+
T Consensus 159 ~~~~~v~~~Sa~~g-----~gi~~l~~~l~~~l~ 187 (189)
T cd00881 159 GLLVPIVPGSALTG-----IGVEELLEAIVEHLP 187 (189)
T ss_pred CCcceEEEEecccC-----cCHHHHHHHHHhhCC
Confidence 24688999999977 567888877776544
No 63
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.65 E-value=4.1e-15 Score=138.46 Aligned_cols=150 Identities=21% Similarity=0.272 Sum_probs=100.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc---c-----Cccc-----cccccEEE------E-----ecCceeEEEEcCCCC--
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT---K-----HNVP-----EVRGPITI------V-----SGKQRRLQFVECPND-- 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T---r-----~~v~-----~~~G~iti------~-----~~~~~rl~fIDtPGd-- 128 (519)
++|+++|+++||||||+++|++... + .... ...| ++. . ......+.||||||.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g-~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERG-ITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCC-CeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 4799999999999999999998420 0 0000 0011 111 1 234567889999995
Q ss_pred chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCce
Q 010060 129 ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAK 207 (519)
Q Consensus 129 l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~k 207 (519)
+.. +..++..||++|||+|++.+...++.+.+..+...++| +++|+||+|+.... .....+.+.+.+ . .....
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~--~~~~~~~~~~~~--~-~~~~~ 153 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD--PERVKQQIEDVL--G-LDPSE 153 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC--HHHHHHHHHHHh--C-CCccc
Confidence 444 45678899999999999988776666666666667888 55689999986421 122233333322 1 12346
Q ss_pred EEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 208 LFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 208 Vf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
+|++||++| .++..|...|....+
T Consensus 154 ~~~~Sa~~g-----~gi~~l~~~l~~~~~ 177 (179)
T cd01890 154 AILVSAKTG-----LGVEDLLEAIVERIP 177 (179)
T ss_pred EEEeeccCC-----CCHHHHHHHHHhhCC
Confidence 899999977 678888887776554
No 64
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.65 E-value=4.4e-15 Score=136.19 Aligned_cols=151 Identities=21% Similarity=0.296 Sum_probs=100.9
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc----cccccccEEEEec--CceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIVSG--KQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~~~--~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
+|+|+|++|+|||||+++|+....... .+...+...+... ....+.|+||||. +..+.. .+..||++|+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 599999999999999999997632211 0000111111111 3678999999996 444443 678999999999
Q ss_pred eCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh---hccCCceEEEEecccCCcCChhH
Q 010060 147 DGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT---EIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 147 Das~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~---e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
|++.+...++.+++..+...++|. ++|+||+|+.... ...+...+...... .+....+++++||+++ .+
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~g 153 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKAANVPF-IVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQIVPTSAKTG-----EG 153 (168)
T ss_pred ECCCCccHHHHHHHHHHHHcCCCE-EEEEEceeccccc--HHHHHHHHHHhhccccccccCcCcEEEeecccC-----CC
Confidence 999887778888888888889985 5589999987422 12222222221111 1223568999999977 57
Q ss_pred HHHHHHHHHhh
Q 010060 224 IRNLARFISVM 234 (519)
Q Consensus 224 i~~LlR~I~~~ 234 (519)
+..+..+|...
T Consensus 154 i~~l~~~l~~~ 164 (168)
T cd01887 154 IDDLLEAILLL 164 (168)
T ss_pred HHHHHHHHHHh
Confidence 77777766543
No 65
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=161.04 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=105.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcccccccc-----EEEEecCceeEEEEcCCCC-------ch-----hHHHHhh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-----ITIVSGKQRRLQFVECPND-------IN-----GMIDCAK 137 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-----iti~~~~~~rl~fIDtPGd-------l~-----smld~ak 137 (519)
+.|||||.||||||||+|+|++.-. ..+.+.+|. +.......+.+.+|||+|- +. .++.++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 5899999999999999999999721 112222221 1122334567999999982 22 2566789
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
.||++|||+|+..|+.+++.++.++|+..+.| +|+|+||+|..+... ... .||+ ++..+++++||..|
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e~----~~~----efys--lG~g~~~~ISA~Hg- 150 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAEE----LAY----EFYS--LGFGEPVPISAEHG- 150 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccCchhhh----hHH----HHHh--cCCCCceEeehhhc-
Confidence 99999999999999999999999999977788 556999999863221 111 1222 35678899999977
Q ss_pred cCChhHHHHHHHHHHhhc
Q 010060 218 KYSKREIRNLARFISVMK 235 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~ 235 (519)
.++.+|+..+....
T Consensus 151 ----~Gi~dLld~v~~~l 164 (444)
T COG1160 151 ----RGIGDLLDAVLELL 164 (444)
T ss_pred ----cCHHHHHHHHHhhc
Confidence 78899998776654
No 66
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.64 E-value=5.1e-15 Score=157.86 Aligned_cols=141 Identities=22% Similarity=0.386 Sum_probs=103.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEE-EEecCceeEEEEcCCCC---------ch-----hH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PIT-IVSGKQRRLQFVECPND---------IN-----GM 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~it-i~~~~~~rl~fIDtPGd---------l~-----sm 132 (519)
..+..|+|+|.+|+|||||+|+|++.... .+....| .+. .+...+..+++|||||. +. .+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 45689999999999999999999986311 1111111 111 12234568999999993 11 23
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+.++..||++|+|+|++.++..++..++..+...|.|. |+|+||+|+..+...+.++.+.+...+ ....+.+++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKAL-VIVVNKWDLVKDEKTREEFKKELRRKL--PFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEECcccCCCHHHHHHHHHHHHHhc--ccCCCCceEEEe
Confidence 55788999999999999999988888999888889884 558999999844445566666666544 234568999999
Q ss_pred cccC
Q 010060 213 GLIH 216 (519)
Q Consensus 213 Al~g 216 (519)
|++|
T Consensus 326 A~~g 329 (429)
T TIGR03594 326 ALTG 329 (429)
T ss_pred CCCC
Confidence 9987
No 67
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.64 E-value=1e-14 Score=139.19 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=106.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc---cccCc-----ccc------ccc-----cEEEEecCceeEEEEcCCCC--chh-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH---YTKHN-----VPE------VRG-----PITIVSGKQRRLQFVECPND--ING- 131 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~---~Tr~~-----v~~------~~G-----~iti~~~~~~rl~fIDtPGd--l~s- 131 (519)
.++|+++|++|+|||||+++|+.. +.... +.. ..| ....+......+.|+||||. +..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 368999999999999999999973 11110 000 011 11112345678999999995 444
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh----ccCCce
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE----IYDGAK 207 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e----~~~~~k 207 (519)
+...+..+|++++|+|++.+...+...++..+...++|.+ +|+||+|+.... .....+.+...+... -..+.+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 4567899999999999998776666666777767899955 589999997422 122233333322110 012568
Q ss_pred EEEEecccCC-----cCChhHHHHHHHHHHhhcCC
Q 010060 208 LFYLSGLIHG-----KYSKREIRNLARFISVMKFP 237 (519)
Q Consensus 208 Vf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r 237 (519)
++++||++|. .-+...+..|+..|....+.
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCCC
Confidence 9999999984 12356778888877766553
No 68
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.64 E-value=5.9e-15 Score=145.54 Aligned_cols=152 Identities=22% Similarity=0.274 Sum_probs=108.0
Q ss_pred EEEEECCCCCChHHHHHHHHhc-cc-----------cCccccccc----------------cE-------------EEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH-YT-----------KHNVPEVRG----------------PI-------------TIVS 114 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~-~T-----------r~~v~~~~G----------------~i-------------ti~~ 114 (519)
.|+|+|++++|||||+++|+.. +. ++.-+..+| .+ .++.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 3789999999999999999963 10 000000011 00 1122
Q ss_pred cCceeEEEEcCCCC--ch-hHHHHhh--ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHH
Q 010060 115 GKQRRLQFVECPND--IN-GMIDCAK--IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRK 189 (519)
Q Consensus 115 ~~~~rl~fIDtPGd--l~-smld~ak--~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~ 189 (519)
..++.++|+||||+ +. .++.++. .+|++++|+|+..++..++.+++.++...|+| +++|+||+|+.+ ...+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~-~~~~~~ 158 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAP-ANILQE 158 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccC-HHHHHH
Confidence 33568999999997 32 3666664 79999999999999999999999999999999 556899999984 445666
Q ss_pred HHHHHHHhhhh-----------------------hccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 190 TKQRLKHRFWT-----------------------EIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 190 ~kk~Lk~~f~~-----------------------e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
..+.+++.+.. .+....++|++|+++| .++..|..+|...
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg-----~Gi~~L~~~L~~l 221 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG-----EGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc-----cCHHHHHHHHHhc
Confidence 66666665531 1223458999999977 6777777777653
No 69
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=8.4e-15 Score=156.71 Aligned_cols=140 Identities=24% Similarity=0.394 Sum_probs=103.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccE-----EEEecCceeEEEEcCCCC---------ch-----hH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI-----TIVSGKQRRLQFVECPND---------IN-----GM 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i-----ti~~~~~~rl~fIDtPGd---------l~-----sm 132 (519)
..++.|+|+|+||+|||||+|+|++.. +..+....|.. ..+...+..+.++||||. +. .+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 457899999999999999999999863 11111112211 112345678999999993 11 24
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+.++..||++|+|+|++.++..++..++..+...|.|.+ +|+||+|+.. .....++.+.+...+ ......+++++|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl~~-~~~~~~~~~~~~~~l--~~~~~~~i~~~S 325 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDLVD-EKTMEEFKKELRRRL--PFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCCC-HHHHHHHHHHHHHhc--ccccCCCEEEEe
Confidence 567889999999999999999888899998888899855 5899999984 344556666665544 234678999999
Q ss_pred cccC
Q 010060 213 GLIH 216 (519)
Q Consensus 213 Al~g 216 (519)
|+++
T Consensus 326 A~~~ 329 (435)
T PRK00093 326 ALTG 329 (435)
T ss_pred CCCC
Confidence 9987
No 70
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.62 E-value=1.3e-15 Score=142.45 Aligned_cols=139 Identities=22% Similarity=0.336 Sum_probs=89.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccE-----EEEecCceeEEEEcCCCC--chh-------HHHHh--hc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI-----TIVSGKQRRLQFVECPND--ING-------MIDCA--KI 138 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i-----ti~~~~~~rl~fIDtPGd--l~s-------mld~a--k~ 138 (519)
+.|+++|.||||||||+|+|++...+ +...+|.. -.+......+.|+|+||- +.. ..+.+ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 47999999999999999999998522 22222210 023335689999999993 221 22333 57
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
.|++|+|+||+. + .....++..+...|+|.+ +|+||+|...... +.--.+.|.+.+ +.+++++||.++
T Consensus 79 ~D~ii~VvDa~~-l-~r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~g-~~id~~~Ls~~L------g~pvi~~sa~~~-- 146 (156)
T PF02421_consen 79 PDLIIVVVDATN-L-ERNLYLTLQLLELGIPVV-VVLNKMDEAERKG-IEIDAEKLSERL------GVPVIPVSARTG-- 146 (156)
T ss_dssp SSEEEEEEEGGG-H-HHHHHHHHHHHHTTSSEE-EEEETHHHHHHTT-EEE-HHHHHHHH------TS-EEEEBTTTT--
T ss_pred CCEEEEECCCCC-H-HHHHHHHHHHHHcCCCEE-EEEeCHHHHHHcC-CEECHHHHHHHh------CCCEEEEEeCCC--
Confidence 999999999975 3 344567777888999955 5899999874221 111133444444 689999999976
Q ss_pred CChhHHHHHHHH
Q 010060 219 YSKREIRNLARF 230 (519)
Q Consensus 219 Y~~~ei~~LlR~ 230 (519)
.++..|...
T Consensus 147 ---~g~~~L~~~ 155 (156)
T PF02421_consen 147 ---EGIDELKDA 155 (156)
T ss_dssp ---BTHHHHHHH
T ss_pred ---cCHHHHHhh
Confidence 566665543
No 71
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=2.2e-14 Score=151.63 Aligned_cols=207 Identities=22% Similarity=0.282 Sum_probs=153.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-------------ccccccccEEEE-----------ecCceeEEEEcCCCCc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-------------NVPEVRGPITIV-----------SGKQRRLQFVECPNDI 129 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-------------~v~~~~G~iti~-----------~~~~~rl~fIDtPGdl 129 (519)
-++++||.|-++|||||..+|+..+..- .+...+| ||+. .+....+.||||||++
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERG-ITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERG-ITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcC-ceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 4789999999999999999999874110 1111233 4442 1245678899999974
Q ss_pred h--h-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc
Q 010060 130 N--G-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 130 ~--s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
. . +.+.+..|..+||||||+.|++.||..-.-.+-.+++. +|.|+||+|+.. .....+++++.+-+ ..+..
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~--Adpervk~eIe~~i---Gid~~ 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPA--ADPERVKQEIEDII---GIDAS 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCC--CCHHHHHHHHHHHh---CCCcc
Confidence 3 2 66777889999999999999999998655555667776 778999999975 23456666665543 34556
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCe--EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEee
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPY--VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLK 284 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY--vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk 284 (519)
..+.+||++| -++.+++..|....|.|. -....|. ++.|.|.|. -..++++=.|-.+.++
T Consensus 162 dav~~SAKtG-----~gI~~iLe~Iv~~iP~P~-g~~~~pLkALifDS~yD~------------Y~GVv~~vRi~dG~ik 223 (603)
T COG0481 162 DAVLVSAKTG-----IGIEDVLEAIVEKIPPPK-GDPDAPLKALIFDSWYDN------------YLGVVVLVRIFDGTLK 223 (603)
T ss_pred hheeEecccC-----CCHHHHHHHHHhhCCCCC-CCCCCcceEEEEeccccc------------cceEEEEEEEeeceec
Confidence 7789999988 688899999988888776 4455576 788888653 1235555456677799
Q ss_pred cCcEEEEecCC-CeEEEeeecC
Q 010060 285 KGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 285 ~~~~VhIpG~G-df~I~~I~~l 305 (519)
+|++|.+.+.| .|.|.+++..
T Consensus 224 ~gdki~~m~tg~~y~V~evGvf 245 (603)
T COG0481 224 KGDKIRMMSTGKEYEVDEVGIF 245 (603)
T ss_pred CCCEEEEEecCCEEEEEEEeec
Confidence 99999888877 7999999964
No 72
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.61 E-value=6.5e-15 Score=135.55 Aligned_cols=134 Identities=23% Similarity=0.336 Sum_probs=100.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC-------chhHHHHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND-------INGMIDCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd-------l~smld~ak~ADlVLLVVD 147 (519)
..|.+||++++|||||+++|.+...+..-+ .. +. ..-.+|||||. +.+++..+..||+|++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KT---q~--i~----~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKT---QA--IE----YYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCcc---ce--eE----ecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 478999999999999999999975332111 00 11 11245999995 2347788899999999999
Q ss_pred CCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHH
Q 010060 148 GSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNL 227 (519)
Q Consensus 148 as~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~L 227 (519)
|+.+.......|.+.+ ..| ||+|+||+|+..+.+++...++.|+.. +..++|++|+.+| .++..|
T Consensus 73 at~~~~~~pP~fa~~f---~~p-vIGVITK~Dl~~~~~~i~~a~~~L~~a------G~~~if~vS~~~~-----eGi~eL 137 (143)
T PF10662_consen 73 ATEPRSVFPPGFASMF---NKP-VIGVITKIDLPSDDANIERAKKWLKNA------GVKEIFEVSAVTG-----EGIEEL 137 (143)
T ss_pred CCCCCccCCchhhccc---CCC-EEEEEECccCccchhhHHHHHHHHHHc------CCCCeEEEECCCC-----cCHHHH
Confidence 9988777777787765 345 889999999996666777777776543 3457899999876 778888
Q ss_pred HHHHH
Q 010060 228 ARFIS 232 (519)
Q Consensus 228 lR~I~ 232 (519)
.++|.
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 77763
No 73
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.59 E-value=1.4e-14 Score=146.70 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=96.3
Q ss_pred EEEEECCCCCChHHHHHHHHhccc---c-Ccc------c-----cccccEEE------EecCceeEEEEcCCCCc--h-h
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT---K-HNV------P-----EVRGPITI------VSGKQRRLQFVECPNDI--N-G 131 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T---r-~~v------~-----~~~G~iti------~~~~~~rl~fIDtPGdl--~-s 131 (519)
+|+|+|++|+|||||+++|+..+. + ..+ . ....++|+ +.+.+.++.||||||.. . .
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999986421 1 000 0 00112333 23567899999999963 3 3
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
+..++..+|++|||+|+..++..++..++..+...++|.+ +|+||+|+... ....+...++..+ .......++|+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a--~~~~~~~~l~~~l--~~~~~~~~~Pi 155 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGA--DFFRVVEQIREKL--GANPVPLQLPI 155 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCC--CHHHHHHHHHHHh--CCCceEEEecc
Confidence 7778999999999999999999999999999999999976 58999999742 2334455555544 22344567888
Q ss_pred ecc
Q 010060 212 SGL 214 (519)
Q Consensus 212 SAl 214 (519)
|+.
T Consensus 156 sa~ 158 (270)
T cd01886 156 GEE 158 (270)
T ss_pred ccC
Confidence 864
No 74
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=2.4e-13 Score=154.10 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=84.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc-Cc---cc------------cccc-----cEEEEecCceeEEEEcCCCCc--
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK-HN---VP------------EVRG-----PITIVSGKQRRLQFVECPNDI-- 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~---v~------------~~~G-----~iti~~~~~~rl~fIDtPGdl-- 129 (519)
..++|+|+|++|+|||||+++|+..+.. .. +. ..+| ..+.+.+.+.++.||||||..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 3579999999999999999999864211 00 00 0112 112234567899999999952
Q ss_pred -hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 130 -NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 130 -~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
..+..++..+|++|||+|+..|++.++..++..+...|+|.+ +++||+|+..
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCC
Confidence 247788999999999999999999999999999999999975 5899999985
No 75
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.59 E-value=5.1e-14 Score=132.69 Aligned_cols=141 Identities=23% Similarity=0.304 Sum_probs=94.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccccccc---EEEEecCceeEEEEcCCCCc------------hhH----H
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP---ITIVSGKQRRLQFVECPNDI------------NGM----I 133 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~---iti~~~~~~rl~fIDtPGdl------------~sm----l 133 (519)
....|+|+|++|+|||||+|+|++..-...+....|. +..+.. ...+.||||||.. ..+ +
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l 95 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV-NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe-CCcEEEEeCCCCccccCChhHHHHHHHHHHHHH
Confidence 3468999999999999999999986311111111121 111221 2479999999931 111 2
Q ss_pred HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 134 DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.....+|++|+|+|++.++.....++++.+...++| +++|+||+|+... .......+.+++.+.. .....++|++||
T Consensus 96 ~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~-~~~~~~~~~i~~~l~~-~~~~~~v~~~Sa 172 (179)
T TIGR03598 96 EKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKK-SELNKQLKKIKKALKK-DADDPSVQLFSS 172 (179)
T ss_pred HhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCH-HHHHHHHHHHHHHHhh-ccCCCceEEEEC
Confidence 223457899999999988888888888888888999 5568999999853 3344445555554422 223458999999
Q ss_pred ccCC
Q 010060 214 LIHG 217 (519)
Q Consensus 214 l~g~ 217 (519)
++|.
T Consensus 173 ~~g~ 176 (179)
T TIGR03598 173 LKKT 176 (179)
T ss_pred CCCC
Confidence 9873
No 76
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=3.1e-13 Score=153.19 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=89.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc-Cc---cc------------cccccEEE------EecCceeEEEEcCCCCch-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK-HN---VP------------EVRGPITI------VSGKQRRLQFVECPNDIN- 130 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~---v~------------~~~G~iti------~~~~~~rl~fIDtPGdl~- 130 (519)
-++|+|+|++|+|||||+++|+..+.. .. +. ..+| +|+ +.+.+.++.|+||||...
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg-~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG-ITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCC-CCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 479999999999999999999853210 00 00 0112 222 345678999999999632
Q ss_pred --hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh
Q 010060 131 --GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR 197 (519)
Q Consensus 131 --smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~ 197 (519)
.+..++..+|++|||+|+..|++.++..++..+...|+|.+ +++||+|+.... +..+.+.+++.
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~--~~~~~~~i~~~ 154 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD--FYRVVEQIKDR 154 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC--HHHHHHHHHHH
Confidence 37788999999999999999999999999999999999976 589999998522 33444444443
No 77
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.58 E-value=1.3e-13 Score=124.12 Aligned_cols=149 Identities=26% Similarity=0.304 Sum_probs=100.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcc---ccccccEE-EEecCceeEEEEcCCCCch-----------hHHHHhhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNV---PEVRGPIT-IVSGKQRRLQFVECPNDIN-----------GMIDCAKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v---~~~~G~it-i~~~~~~rl~fIDtPGdl~-----------smld~ak~ 138 (519)
...|+++|++|+|||||+|+|++..-.... ........ +....+..+.++||||... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999986311000 00000011 2233457899999999421 13345788
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
+|++++|+|++.++......++..+...+.|.+ +|+||+|+......+.+....+... .+..+++++|++.+
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~-- 154 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVI-LVLNKIDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISALKG-- 154 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEE-EEEEchhccccHHHHHHHHHHHHhc-----cCCCceEEEEeccC--
Confidence 999999999998766666677787777778855 5899999985444444444444332 24578999999865
Q ss_pred CChhHHHHHHHHHHh
Q 010060 219 YSKREIRNLARFISV 233 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~ 233 (519)
..+..+...|..
T Consensus 155 ---~~~~~l~~~l~~ 166 (168)
T cd04163 155 ---ENVDELLEEIVK 166 (168)
T ss_pred ---CChHHHHHHHHh
Confidence 566666666543
No 78
>COG2262 HflX GTPases [General function prediction only]
Probab=99.57 E-value=2.9e-14 Score=149.20 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=97.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc--cCccccccccEE--EEecCceeEEEEcCCCC-----------chhHHHH
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT--KHNVPEVRGPIT--IVSGKQRRLQFVECPND-----------INGMIDC 135 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--r~~v~~~~G~it--i~~~~~~rl~fIDtPGd-----------l~smld~ 135 (519)
...-+.|+++|++|+|||||+|+|++... .+.+.....|.| +.-..++.+.+-||.|- |.++|+.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 45557999999999999999999998632 222211111221 22334678999999982 5578999
Q ss_pred hhccCEEEEEEeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 136 AKIADLALLLIDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
+..||++|+|||++++.-.+.. .....|.. ..+| +|.|+||+|++.+...+. . ++... + ..+++
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~~~----~----~~~~~-~--~~v~i 336 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEILA----E----LERGS-P--NPVFI 336 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhhhh----h----hhhcC-C--CeEEE
Confidence 9999999999999987433222 34444444 4556 566999999986543111 1 11111 1 57899
Q ss_pred ecccCCcCChhHHHHHHHHHHhhcC
Q 010060 212 SGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
||++| .++..|.+.|.....
T Consensus 337 SA~~~-----~gl~~L~~~i~~~l~ 356 (411)
T COG2262 337 SAKTG-----EGLDLLRERIIELLS 356 (411)
T ss_pred EeccC-----cCHHHHHHHHHHHhh
Confidence 99977 566666666655443
No 79
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=8.7e-14 Score=125.48 Aligned_cols=139 Identities=20% Similarity=0.241 Sum_probs=93.9
Q ss_pred EEECCCCCChHHHHHHHHhccccCccccccc----c-EEEEecCceeEEEEcCCCCch-----------hHHHHhhccCE
Q 010060 78 VVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----P-ITIVSGKQRRLQFVECPNDIN-----------GMIDCAKIADL 141 (519)
Q Consensus 78 aVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~-iti~~~~~~rl~fIDtPGdl~-----------smld~ak~ADl 141 (519)
+++|++|+|||||+++|++.... .+....+ . .......+..+.++||||... .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999986311 0010111 0 011223457899999999422 12345788999
Q ss_pred EEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 142 ALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 142 VLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+++|+|+..++.....+++..++..+.|. ++|+||+|+...... ... ++. ....+++++|++++
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~~~~~----~~~----~~~--~~~~~~~~~Sa~~~----- 143 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKVDNIKEEDE----AAE----FYS--LGFGEPIPISAEHG----- 143 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECcccCChHHH----HHH----HHh--cCCCCeEEEecccC-----
Confidence 99999998888777778888888888885 568999999853221 111 221 12347899999976
Q ss_pred hHHHHHHHHHHh
Q 010060 222 REIRNLARFISV 233 (519)
Q Consensus 222 ~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 144 ~gv~~l~~~l~~ 155 (157)
T cd01894 144 RGIGDLLDAILE 155 (157)
T ss_pred CCHHHHHHHHHh
Confidence 567777766653
No 80
>PRK13351 elongation factor G; Reviewed
Probab=99.57 E-value=3.2e-13 Score=152.90 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=82.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc----------Ccccc------ccc-----cEEEEecCceeEEEEcCCCC--ch
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK----------HNVPE------VRG-----PITIVSGKQRRLQFVECPND--IN 130 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr----------~~v~~------~~G-----~iti~~~~~~rl~fIDtPGd--l~ 130 (519)
.++|+|+|++|+|||||+++|+..+.. ..+.+ .+| .+..+.+.+..+.||||||+ +.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 479999999999999999999964310 00000 011 11223456789999999996 33
Q ss_pred h-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 131 G-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 131 s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
. +..++..+|++|||+|++.+...++..++..+...++|.+ +|+||+|+..
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~ 139 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVG 139 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCC
Confidence 3 6778899999999999999998888888888888899965 5899999874
No 81
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.57 E-value=3e-14 Score=130.96 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=90.7
Q ss_pred EEEEECCCCCChHHHHHHHHhccccC------c-cccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKH------N-VPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~-v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
+|+|+|++|||||||+++|++.+... . ..+....+..+...+..+.++||||. +..+ ...+..+|+++||
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 48999999999999999998753210 0 11111111123335688999999995 4443 3457899999999
Q ss_pred EeCCCCCccc-HH-HHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEME-TF-EFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~e-t~-e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++..-... .. .+..+++ ..++| +++|+||+|+.... ...+..+.+............+++++||++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---- 154 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDAL-SVEEIKEVFQDKAEEIGRRDCLVLPVSALEG---- 154 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCC-CHHHHHHHhccccccccCCceEEEEeeCCCC----
Confidence 9997542111 11 2222222 25788 55689999986421 2223333332221111123568999999977
Q ss_pred hhHHHHHHHHHH
Q 010060 221 KREIRNLARFIS 232 (519)
Q Consensus 221 ~~ei~~LlR~I~ 232 (519)
.++..++.+|+
T Consensus 155 -~gv~e~~~~l~ 165 (167)
T cd04160 155 -TGVREGIEWLV 165 (167)
T ss_pred -cCHHHHHHHHh
Confidence 56777776664
No 82
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.8e-15 Score=148.18 Aligned_cols=214 Identities=23% Similarity=0.306 Sum_probs=153.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc--------cC----------cc------cccc-ccEEEE------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT--------KH----------NV------PEVR-GPITIV------------ 113 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--------r~----------~v------~~~~-G~iti~------------ 113 (519)
.++.++|+.+||..+||||+++++.+-.| |+ .+ ..++ +.+.-+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 46779999999999999999999998521 00 00 0000 000000
Q ss_pred ec------CceeEEEEcCCCC--c-hhHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 114 SG------KQRRLQFVECPND--I-NGMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 114 ~~------~~~rl~fIDtPGd--l-~smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
.+ --+.+.|+||||+ + ..||.++.+.|.+||++.+++.. ++||.|+|..+.-+.+..++++-||+|+++.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE 194 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH
Confidence 00 0256899999996 3 34999999999999999998654 6789999999998899999999999999964
Q ss_pred HHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccc
Q 010060 184 VKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVR 263 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~ 263 (519)
.+..+..+.+.+++......+++++|+||.-. -.+.-++.+|...+|-|..--.+.|-|++-|-+|+.-|..--
T Consensus 195 -~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlk-----yNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev 268 (466)
T KOG0466|consen 195 -SQALEQHEQIQKFIQGTVAEGAPIIPISAQLK-----YNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEV 268 (466)
T ss_pred -HHHHHHHHHHHHHHhccccCCCceeeehhhhc-----cChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchh
Confidence 44556666777777777789999999998743 468888899999998888666677999999988885442210
Q ss_pred cCCCCCceEEEEEEEEeEEeecCcEEEE-ec
Q 010060 264 MNNKCDRNVTIYGYLRGCNLKKGIKVHI-AG 293 (519)
Q Consensus 264 ~~~~~~~~l~v~GyVRG~~Lk~~~~VhI-pG 293 (519)
.+ ..|. +.-|.+-.+.|++||.+.| ||
T Consensus 269 ~~--lkGg-vaggsil~Gvlkvg~~IEiRPG 296 (466)
T KOG0466|consen 269 DD--LKGG-VAGGSILKGVLKVGQEIEIRPG 296 (466)
T ss_pred hc--ccCc-cccchhhhhhhhcCcEEEecCc
Confidence 00 0111 2334444455699999987 44
No 83
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.56 E-value=1.1e-13 Score=127.41 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=89.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcccccccc---EE--EEecCceeEEEEcCCCCch-----------hHH-HHhh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP---IT--IVSGKQRRLQFVECPNDIN-----------GMI-DCAK 137 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~---it--i~~~~~~rl~fIDtPGdl~-----------sml-d~ak 137 (519)
+.|+++|++|+|||||+++|++.... +....+. +. ........++||||||... ..+ ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37899999999999999999986432 1111111 11 1223457899999999521 112 1223
Q ss_pred ccCEEEEEEeCCCCCc---ccHHHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 138 IADLALLLIDGSYGFE---METFEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e---~et~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+|++|||+|++.... ....+++..++.. +.| +|+|+||+|+.... .... .+.+ . . ....++|++|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~-~~~~-~~~~----~-~-~~~~~~~~~S 149 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFE-DLSE-IEEE----E-E-LEGEEVLKIS 149 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchh-hHHH-HHHh----h-h-hccCceEEEE
Confidence 4799999999975422 1223455555544 667 55699999997532 2222 1111 1 1 1357899999
Q ss_pred cccCCcCChhHHHHHHHHHHhh
Q 010060 213 GLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~ 234 (519)
|++| .++..+...|+..
T Consensus 150 a~~~-----~gi~~l~~~l~~~ 166 (168)
T cd01897 150 TLTE-----EGVDEVKNKACEL 166 (168)
T ss_pred eccc-----CCHHHHHHHHHHH
Confidence 9977 6777777776643
No 84
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.56 E-value=1.1e-13 Score=132.48 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=88.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc--cCc-cccccccEE--EEecCceeEEEEcCCCCc-----------hhHHHH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT--KHN-VPEVRGPIT--IVSGKQRRLQFVECPNDI-----------NGMIDC 135 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--r~~-v~~~~G~it--i~~~~~~rl~fIDtPGdl-----------~smld~ 135 (519)
++-+.|+|+|++|||||||+|+|++... ... ..+. .+.+ +.......++||||||.. ..++..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL-DPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec-cceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 4447999999999999999999998631 111 1111 1111 112223489999999952 123344
Q ss_pred hhccCEEEEEEeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 136 AKIADLALLLIDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
+..+|++++|+|++.+...+.. .++..+.. .+.| +++|+||+|+..... .. .. + .....++|++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~-~~---~~----~---~~~~~~~~~~ 185 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEE-LE---ER----L---EAGRPDAVFI 185 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHH-HH---HH----h---hcCCCceEEE
Confidence 6789999999999865433322 33344433 3456 566999999975322 11 11 1 1235679999
Q ss_pred ecccCCcCChhHHHHHHHHHH
Q 010060 212 SGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~ 232 (519)
||+++ .++..+...|.
T Consensus 186 Sa~~~-----~gi~~l~~~L~ 201 (204)
T cd01878 186 SAKTG-----EGLDELLEAIE 201 (204)
T ss_pred EcCCC-----CCHHHHHHHHH
Confidence 99977 46666666554
No 85
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.56 E-value=9.6e-14 Score=145.57 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=90.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc--CccccccccEE--EEecCceeEEEEcCCCC-----------chhHHHHhh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGPIT--IVSGKQRRLQFVECPND-----------INGMIDCAK 137 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~it--i~~~~~~rl~fIDtPGd-----------l~smld~ak 137 (519)
....|+++|+||||||||+|+|++.... ........+++ +....+..++|+||||. +.++++.+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 3368999999999999999999986311 11111111221 12223568999999995 223566788
Q ss_pred ccCEEEEEEeCCCCCcccHH----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 138 IADLALLLIDGSYGFEMETF----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.||++|+|+|++.+...+.. ++|..+...+.| +++|+||+|+.... .+. .+.. ...++|++||
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~-~v~----~~~~-------~~~~~i~iSA 334 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEP-RIE----RLEE-------GYPEAVFVSA 334 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChH-hHH----HHHh-------CCCCEEEEEc
Confidence 99999999999876543322 334433333566 55699999997532 211 1110 1246899999
Q ss_pred ccCCcCChhHHHHHHHHHHh
Q 010060 214 LIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~ 233 (519)
++| .++..|...|..
T Consensus 335 ktg-----~GI~eL~~~I~~ 349 (351)
T TIGR03156 335 KTG-----EGLDLLLEAIAE 349 (351)
T ss_pred cCC-----CCHHHHHHHHHh
Confidence 977 567777766643
No 86
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=1.4e-13 Score=149.61 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=100.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc----cE-EEEecCceeEEEEcCCCC-----------chh---H
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PI-TIVSGKQRRLQFVECPND-----------ING---M 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~i-ti~~~~~~rl~fIDtPGd-----------l~s---m 132 (519)
..++.|+|+|.||||||||+|+|++..- ..+....| ++ ..+...+..+.||||||. +.+ .
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 3468999999999999999999998631 11111111 11 122334567899999993 111 1
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
..++..||++|+|+|++.++..+...++..+...|.|. |+|+||+|+.... ......+.+...+ .....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~pi-IiV~NK~Dl~~~~-~~~~~~~~i~~~l--~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRAL-VLAFNKWDLVDED-RRYYLEREIDREL--AQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECcccCChh-HHHHHHHHHHHhc--ccCCCCCEEEEE
Confidence 34568999999999999998888778888887789884 5689999998532 2223333343322 122457899999
Q ss_pred cccCCcCChhHHHHHHHHHH
Q 010060 213 GLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~ 232 (519)
|++| .++..+...+.
T Consensus 364 Ak~g-----~gv~~lf~~i~ 378 (472)
T PRK03003 364 AKTG-----RAVDKLVPALE 378 (472)
T ss_pred CCCC-----CCHHHHHHHHH
Confidence 9988 34444444433
No 87
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.54 E-value=7.1e-14 Score=125.67 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=85.1
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC-------chhHHHHhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND-------INGMIDCAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd-------l~smld~ak~ADlVLLVVDa 148 (519)
.|+++|.+|||||||+|+|++..... ...+.+. .. ..+|||||. +..++..++.||++|+|+|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~-----~~t~~~~-~~---~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~ 72 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY-----KKTQAVE-YN---DGAIDTPGEYVENRRLYSALIVTAADADVIALVQSA 72 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc-----ccceeEE-Ec---CeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecC
Confidence 68999999999999999999874321 1111111 11 168999996 22355567899999999999
Q ss_pred CCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHH
Q 010060 149 SYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLA 228 (519)
Q Consensus 149 s~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~Ll 228 (519)
+.+...+...++..+ +.| +++|+||+|+...........+.++. ....++|++||+++ .++..+.
T Consensus 73 ~~~~s~~~~~~~~~~---~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~-----~gi~~l~ 137 (142)
T TIGR02528 73 TDPESRFPPGFASIF---VKP-VIGLVTKIDLAEADVDIERAKELLET------AGAEPIFEISSVDE-----QGLEALV 137 (142)
T ss_pred CCCCcCCChhHHHhc---cCC-eEEEEEeeccCCcccCHHHHHHHHHH------cCCCcEEEEecCCC-----CCHHHHH
Confidence 876655444444432 346 55689999997422112222222211 23347999999977 5666666
Q ss_pred HHHH
Q 010060 229 RFIS 232 (519)
Q Consensus 229 R~I~ 232 (519)
..|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 6553
No 88
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=1.4e-13 Score=146.21 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=91.9
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccc----cccE-EEEecC-ceeEEEEcCCCCc---------h-hHHHHhhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEV----RGPI-TIVSGK-QRRLQFVECPNDI---------N-GMIDCAKIA 139 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~----~G~i-ti~~~~-~~rl~fIDtPGdl---------~-smld~ak~A 139 (519)
-|+|||+||||||||+|+|++... .+... ..++ -++... .+.++|+||||.+ . .++..+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 699999999999999999998632 11111 1111 123333 4579999999943 1 377889999
Q ss_pred CEEEEEEeCCCC--Cc--ccHHHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEE
Q 010060 140 DLALLLIDGSYG--FE--METFEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 140 DlVLLVVDas~g--~e--~et~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
|++|+|+|++.. .. .....+++.+.. .+.|.+ +|+||+|+... ..+.+..+.+.+.+ ....++|+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I-lVlNKiDl~~~-~el~~~l~~l~~~~----~~~~~Vi~ 312 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW-LVFNKIDLLDE-EEAEERAKAIVEAL----GWEGPVYL 312 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE-EEEeCCccCCh-HHHHHHHHHHHHHh----CCCCCEEE
Confidence 999999998721 11 111234444443 256755 58999999753 33333333332221 11237999
Q ss_pred EecccCCcCChhHHHHHHHHHHhhcC
Q 010060 211 LSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
+||+++ ..+..|+..|....+
T Consensus 313 ISA~tg-----~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 313 ISAASG-----LGVKELCWDLMTFIE 333 (390)
T ss_pred EECCCC-----cCHHHHHHHHHHHhh
Confidence 999976 567777766655443
No 89
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.53 E-value=2.7e-13 Score=124.72 Aligned_cols=146 Identities=22% Similarity=0.251 Sum_probs=86.9
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc--C-ccccccccEEEEecCce-eEEEEcCCCCc---------h-hHHHHhhccCE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK--H-NVPEVRGPITIVSGKQR-RLQFVECPNDI---------N-GMIDCAKIADL 141 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr--~-~v~~~~G~iti~~~~~~-rl~fIDtPGdl---------~-smld~ak~ADl 141 (519)
.|+|||++|||||||+|+|.+.... . ...+....+........ .+.|+||||.. . .++..+..||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999975321 0 00111111112223334 89999999942 1 24455677999
Q ss_pred EEEEEeCCCC-CcccH-HHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 142 ALLLIDGSYG-FEMET-FEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 142 VLLVVDas~g-~e~et-~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
+|+|+|++.+ -..+. ..++..+.. .+.|. ++|+||+|+..... .....+.+ +... ...++|++||+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl~~~~~-~~~~~~~~----~~~~-~~~~~~~~Sa~ 154 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNKIDLLDEEE-LFELLKEL----LKEL-WGKPVFPISAL 154 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEchhcCCchh-hHHHHHHH----HhhC-CCCCEEEEecC
Confidence 9999999865 11111 123333332 25664 56899999975432 22222111 1111 24678999999
Q ss_pred cCCcCChhHHHHHHHHHHh
Q 010060 215 IHGKYSKREIRNLARFISV 233 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~~ 233 (519)
++ .++..+...|..
T Consensus 155 ~~-----~gi~~l~~~i~~ 168 (170)
T cd01898 155 TG-----EGLDELLRKLAE 168 (170)
T ss_pred CC-----CCHHHHHHHHHh
Confidence 76 567777766653
No 90
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.53 E-value=3.8e-13 Score=127.19 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=97.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcccccccc---EEEEecCceeEEEEcCCCCc------------hh----H
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP---ITIVSGKQRRLQFVECPNDI------------NG----M 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~---iti~~~~~~rl~fIDtPGdl------------~s----m 132 (519)
...+.|+|+|++|+|||||+++|++......+....|. +.... ....+.||||||.. .. .
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 34578999999999999999999985211111111121 11111 24689999999931 11 2
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+..+..++++++|+|++.++.....+++..+...++|. ++|+||+|+.... ........+...+... ..++|++|
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~-iiv~nK~Dl~~~~-~~~~~~~~i~~~l~~~---~~~~~~~S 175 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPV-LIVLTKADKLKKG-ERKKQLKKVRKALKFG---DDEVILFS 175 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcE-EEEEECcccCCHH-HHHHHHHHHHHHHHhc---CCceEEEE
Confidence 23334567899999998877766667777777788884 4589999998532 3333444444433211 57899999
Q ss_pred cccCCcCChhHHHHHHHHHHh
Q 010060 213 GLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~ 233 (519)
|+++ .++..+...|..
T Consensus 176 a~~~-----~gi~~l~~~i~~ 191 (196)
T PRK00454 176 SLKK-----QGIDELRAAIAK 191 (196)
T ss_pred cCCC-----CCHHHHHHHHHH
Confidence 9976 456666665543
No 91
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=1.1e-12 Score=152.63 Aligned_cols=178 Identities=19% Similarity=0.270 Sum_probs=124.2
Q ss_pred eEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH----------
Q 010060 119 RLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK---------- 185 (519)
Q Consensus 119 rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k---------- 185 (519)
.++||||||+ +.. +...+..+|++|||+|++.++.+++.+++..++..++| +|+|+||+|+...+.
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~ 605 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLN 605 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhh
Confidence 4899999996 444 33457789999999999999999999999999999998 556999999964211
Q ss_pred ---HHHHHHHHHHHh-------hh------------hhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcC----CCC
Q 010060 186 ---KLRKTKQRLKHR-------FW------------TEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKF----PPL 239 (519)
Q Consensus 186 ---~l~~~kk~Lk~~-------f~------------~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~----r~~ 239 (519)
+...+..++..+ |. .++....+++|+||++| .++.+|+.+|..... ..+
T Consensus 606 ~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG-----eGId~Ll~~l~~l~~~~l~~~L 680 (1049)
T PRK14845 606 FNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG-----EGIPELLMMVAGLAQKYLEERL 680 (1049)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC-----CCHHHHHHHHHHhhHHhhhhhh
Confidence 111222222111 10 23456789999999988 567777766543322 122
Q ss_pred ccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeecCCCCCCCCh
Q 010060 240 SWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPLPS 313 (519)
Q Consensus 240 ~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~l~dP~pl~~ 313 (519)
......|. ..+++.... ++ ...+++|.|..+.|++|+.+.+.+.++....+|.++-+|-|+.+
T Consensus 681 ~~~~~~~~~g~VlEv~~~----------kG-~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e 744 (1049)
T PRK14845 681 KLNVEGYAKGTILEVKEE----------KG-LGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDE 744 (1049)
T ss_pred ccCCCCceEEEEEEEEEe----------cC-ceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccc
Confidence 22222343 334444322 12 24678999999999999999998888888999999999999877
No 92
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.52 E-value=3.1e-13 Score=133.27 Aligned_cols=106 Identities=18% Similarity=0.319 Sum_probs=80.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc---cC-----c------cccccc------cEEEE-e--------cCceeEEEEcC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT---KH-----N------VPEVRG------PITIV-S--------GKQRRLQFVEC 125 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T---r~-----~------v~~~~G------~iti~-~--------~~~~rl~fIDt 125 (519)
++|+|+|++++|||||+.+|+.... +. . ....+| ++++. . +....+.||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 5899999999999999999997531 00 0 000111 11121 2 12678899999
Q ss_pred CCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 126 PND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 126 PGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
||+ +.. +..++..||.+|+|+|+..|+..++.+++..+...++| +|+|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence 995 444 78889999999999999999999999999988888998 55689999986
No 93
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=146.26 Aligned_cols=153 Identities=20% Similarity=0.291 Sum_probs=108.3
Q ss_pred CccCCcCCCCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEE-----EecCceeEEEEcCCCC---------
Q 010060 63 PTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI-----VSGKQRRLQFVECPND--------- 128 (519)
Q Consensus 63 ~~~~R~~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti-----~~~~~~rl~fIDtPGd--------- 128 (519)
...++...-..+..|+|+|.||||||||+|+|++.. +..|+.+.|+..- +.-.+..+.++||.|-
T Consensus 206 ~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d-~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~ 284 (454)
T COG0486 206 ATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD-RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER 284 (454)
T ss_pred HhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCC-ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHH
Confidence 333443334556899999999999999999999984 4455555554332 2335778999999992
Q ss_pred --chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc
Q 010060 129 --INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 129 --l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
+...+..++.||++|||+|++.+++.+...++. +...+.| +++|+||.|+..+... .. + +...+.
T Consensus 285 iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~-~~--------~--~~~~~~ 351 (454)
T COG0486 285 IGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIEL-ES--------E--KLANGD 351 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhccccccc-ch--------h--hccCCC
Confidence 334677899999999999999988777777777 3345666 5568999999864321 11 1 234566
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+++++|+++| .++..|...|...
T Consensus 352 ~~i~iSa~t~-----~Gl~~L~~~i~~~ 374 (454)
T COG0486 352 AIISISAKTG-----EGLDALREAIKQL 374 (454)
T ss_pred ceEEEEecCc-----cCHHHHHHHHHHH
Confidence 8999999977 5666666555443
No 94
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.52 E-value=2.1e-13 Score=126.84 Aligned_cols=140 Identities=14% Similarity=0.196 Sum_probs=91.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC-------chhHHHHhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND-------INGMIDCAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd-------l~smld~ak~ADlVLLVVDa 148 (519)
.|+++|++|+|||||+|+|.+..+.. ...+.+.. ... .+|||||. +..++.+++.||++|||+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~---~~~~~v~~-~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA---RKTQAVEF-NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC---ccceEEEE-CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 69999999999999999999875321 11121111 111 26999994 22366778999999999999
Q ss_pred CCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHH
Q 010060 149 SYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLA 228 (519)
Q Consensus 149 s~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~Ll 228 (519)
+.+.......++.. ..+.| +++|+||+|+... ....+.+.+++ .....++|++||+++ .++..|.
T Consensus 75 ~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~--~~~~~~~~~~~-----~~~~~p~~~~Sa~~g-----~gi~~l~ 139 (158)
T PRK15467 75 NDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDA--DVAATRKLLLE-----TGFEEPIFELNSHDP-----QSVQQLV 139 (158)
T ss_pred CCcccccCHHHHhc--cCCCC-eEEEEEccccCcc--cHHHHHHHHHH-----cCCCCCEEEEECCCc-----cCHHHHH
Confidence 87654444444432 13566 5679999998642 22233332222 112369999999977 6888888
Q ss_pred HHHHhhcCCC
Q 010060 229 RFISVMKFPP 238 (519)
Q Consensus 229 R~I~~~~~r~ 238 (519)
..|.......
T Consensus 140 ~~l~~~~~~~ 149 (158)
T PRK15467 140 DYLASLTKQE 149 (158)
T ss_pred HHHHHhchhh
Confidence 8777665543
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.52 E-value=2.2e-13 Score=145.29 Aligned_cols=144 Identities=23% Similarity=0.255 Sum_probs=100.5
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcccccccc-----EEEEecCceeEEEEcCCCC------ch-----hHHHHhhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-----ITIVSGKQRRLQFVECPND------IN-----GMIDCAKIA 139 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-----iti~~~~~~rl~fIDtPGd------l~-----smld~ak~A 139 (519)
.|+|||.||||||||+|+|++... ..+....|. .......+..+.+|||||. +. .+..+++.|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 489999999999999999998631 111111121 1122345678999999994 11 145567899
Q ss_pred CEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 140 DLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|++|||+|+..++.....+++..++..+.| +++|+||+|+....... .. ++ -....++|++||.+|
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~~----~~----~~--~lg~~~~~~vSa~~g--- 145 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAVA----AE----FY--SLGFGEPIPISAEHG--- 145 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCcccccH----HH----HH--hcCCCCeEEEeCCcC---
Confidence 999999999999988888899999888988 55689999987532211 11 11 124457899999977
Q ss_pred ChhHHHHHHHHHHhhcC
Q 010060 220 SKREIRNLARFISVMKF 236 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~ 236 (519)
.++..++..+....+
T Consensus 146 --~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 146 --RGIGDLLDAILELLP 160 (429)
T ss_pred --CChHHHHHHHHHhcC
Confidence 466777766655443
No 96
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.51 E-value=2.8e-12 Score=145.35 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=83.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC-cc---------cc-----ccccEEE------EecCceeEEEEcCCCC--c
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NV---------PE-----VRGPITI------VSGKQRRLQFVECPND--I 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v---------~~-----~~G~iti------~~~~~~rl~fIDtPGd--l 129 (519)
.-++|+|+|++|+|||||+++|+...... .+ .+ ...++|+ +.+.+.++.||||||. +
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 34799999999999999999998642110 00 00 0112333 2346789999999996 3
Q ss_pred h-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 130 N-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 130 ~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
. .+..++..+|++|||+|+..+...++..++..+...++|.+ +|+||+|+..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~ 141 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTG 141 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCC
Confidence 3 36678899999999999999999999999999998999976 5899999985
No 97
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.50 E-value=2e-13 Score=124.49 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=89.1
Q ss_pred EEEEECCCCCChHHHHHHHHhcc--ccCccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY--TKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSY 150 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~--Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~ 150 (519)
.|+++|++|||||||+++|++.. ......++.-.+..+.....++.++||||. +..++ ..++.+|++|||+|++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 47899999999999999999863 111111111112223445678999999996 34444 35689999999999986
Q ss_pred CCcccH--HHHHHHHH-----hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 151 GFEMET--FEFLNLMQ-----NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 151 g~e~et--~e~L~~L~-----~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+..... .++..+++ ..++| +++|+||+|+.... ...++...+. +........++|++||++| .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~-~~~~~~~~l~--~~~~~~~~~~~~~~Sa~~g-----~g 151 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL-TAVKITQLLG--LENIKDKPWHIFASNALTG-----EG 151 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-CHHHHHHHhC--CccccCceEEEEEeeCCCC-----Cc
Confidence 542211 12222222 24677 55689999997422 1122222211 0000111246899999977 67
Q ss_pred HHHHHHHHH
Q 010060 224 IRNLARFIS 232 (519)
Q Consensus 224 i~~LlR~I~ 232 (519)
+..++..|.
T Consensus 152 v~~~~~~l~ 160 (162)
T cd04157 152 LDEGVQWLQ 160 (162)
T ss_pred hHHHHHHHh
Confidence 777776664
No 98
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.50 E-value=5e-13 Score=122.04 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=88.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccc-cccccEE---EEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EVRGPIT---IVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~~G~it---i~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
-..|+++|.+|+|||||++++++........ .....++ .+.+....+.++||||. +..++ ..++.+|.+++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4689999999999999999999763211111 1111111 12223457889999994 55554 4578999999999
Q ss_pred eCCCCCcccHH-----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++....-+.. +++......++| +++|+||+|+.............+... .+.++|++||++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~----- 149 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVSREEGQELARK------LKIPYIETSAKDR----- 149 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceecHHHHHHHHHH------cCCcEEEeeCCCC-----
Confidence 99753221111 222222224677 556899999975321111111111111 1458899999976
Q ss_pred hHHHHHHHHHHh
Q 010060 222 REIRNLARFISV 233 (519)
Q Consensus 222 ~ei~~LlR~I~~ 233 (519)
.++..+...|+.
T Consensus 150 ~~i~~l~~~l~~ 161 (164)
T cd04145 150 LNVDKAFHDLVR 161 (164)
T ss_pred CCHHHHHHHHHH
Confidence 577777766654
No 99
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.50 E-value=4.4e-13 Score=152.40 Aligned_cols=150 Identities=21% Similarity=0.258 Sum_probs=101.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccc----cccE-EEEecCceeEEEEcCCCCc-----------hh---HH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEV----RGPI-TIVSGKQRRLQFVECPNDI-----------NG---MI 133 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~----~G~i-ti~~~~~~rl~fIDtPGdl-----------~s---ml 133 (519)
..+.|+|+|+||||||||+|+|++... ..+... ..++ ..+...+..+.||||||.. .+ .+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 347999999999999999999998731 111111 1111 1233456678999999931 11 23
Q ss_pred HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 134 DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.++..||++|||+|++.++..+...++..+...|.|. |+|+||+|+... .....+.+.+...+ ......+++++||
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~pi-IiV~NK~DL~~~-~~~~~~~~~~~~~l--~~~~~~~ii~iSA 603 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDAGRAL-VLVFNKWDLMDE-FRRQRLERLWKTEF--DRVTWARRVNLSA 603 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEEchhcCCh-hHHHHHHHHHHHhc--cCCCCCCEEEEEC
Confidence 4568899999999999999888888888777789885 468999999853 22333334443332 2346788999999
Q ss_pred ccCCcCChhHHHHHHHHHH
Q 010060 214 LIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~ 232 (519)
++| .++..|+..+.
T Consensus 604 ktg-----~gv~~L~~~i~ 617 (712)
T PRK09518 604 KTG-----WHTNRLAPAMQ 617 (712)
T ss_pred CCC-----CCHHHHHHHHH
Confidence 987 34555554443
No 100
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.50 E-value=3.9e-13 Score=123.18 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=90.3
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSYGF 152 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~g~ 152 (519)
.|+|+|++++|||||+++|..........+..-.+........++.|+||||. +..+.. .++.||++|+|+|++...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 37899999999999999997653211111111112223345678999999995 555544 578999999999997542
Q ss_pred c--ccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHH
Q 010060 153 E--METFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNL 227 (519)
Q Consensus 153 e--~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~L 227 (519)
. .....+...++. .+.| +++|+||+|+.... ...++...+.... ......++|++||++| .++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~Sa~~~-----~gi~~l 151 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-SEAEISEKLGLSE--LKDRTWSIFKTSAIKG-----EGLDEG 151 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-CHHHHHHHhCccc--cCCCcEEEEEeeccCC-----CCHHHH
Confidence 1 111233334332 3667 55689999997432 1222222221000 0012357999999977 677777
Q ss_pred HHHHH
Q 010060 228 ARFIS 232 (519)
Q Consensus 228 lR~I~ 232 (519)
...|+
T Consensus 152 ~~~l~ 156 (158)
T cd04151 152 MDWLV 156 (158)
T ss_pred HHHHh
Confidence 76664
No 101
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=3.1e-13 Score=146.85 Aligned_cols=146 Identities=22% Similarity=0.280 Sum_probs=98.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEE------EEecCceeEEEEcCCCCc------h----h-HHHH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT------IVSGKQRRLQFVECPNDI------N----G-MIDC 135 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it------i~~~~~~rl~fIDtPGdl------~----s-mld~ 135 (519)
.++.|+|||.||||||||+|+|++.... .+....| +| .....+..+.||||||.. . . +..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~g-vT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPG-VTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCC-CCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3468999999999999999999985311 1111112 11 122345679999999942 1 1 2345
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
++.||++|||+|++.+......+++..++..+.| +|+|+||+|+...... .. .++.. .....|++||++
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~~---~~-----~~~~~--g~~~~~~iSA~~ 183 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEAD---AA-----ALWSL--GLGEPHPVSALH 183 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccchh---hH-----HHHhc--CCCCeEEEEcCC
Confidence 7899999999999988776667788888888888 5569999998642111 11 11211 222457999997
Q ss_pred CCcCChhHHHHHHHHHHhhcC
Q 010060 216 HGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
| .++.+|+..|....+
T Consensus 184 g-----~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 184 G-----RGVGDLLDAVLAALP 199 (472)
T ss_pred C-----CCcHHHHHHHHhhcc
Confidence 7 567777777766543
No 102
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.49 E-value=3.3e-13 Score=134.13 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=88.9
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc----------Cccc------cccc-----cEEEEecCceeEEEEcCCCC--chh-
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK----------HNVP------EVRG-----PITIVSGKQRRLQFVECPND--ING- 131 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr----------~~v~------~~~G-----~iti~~~~~~rl~fIDtPGd--l~s- 131 (519)
+|+++|++|+|||||+++|+..... ..+. ..+| .+..+...+.++.||||||. +..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999975210 0000 0111 11122456789999999995 343
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
+..+++.+|.+++|+|++.++..++..++..++..++|.+ +|+||+|+... ...++...++..|
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a--~~~~~~~~i~~~~ 144 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGA--DLEKVYQEIKEKL 144 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCC--CHHHHHHHHHHHH
Confidence 6778899999999999999998888899999988999966 58999999742 2355666666665
No 103
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=7.5e-13 Score=138.06 Aligned_cols=146 Identities=20% Similarity=0.271 Sum_probs=90.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcccccc----cc-EEEEec-CceeEEEEcCCCCch----------hHHHHhhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVR----GP-ITIVSG-KQRRLQFVECPNDIN----------GMIDCAKI 138 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~----G~-iti~~~-~~~rl~fIDtPGdl~----------smld~ak~ 138 (519)
.-|+|||+||||||||+|+|+..... +.... .| +-++.. ...+++++|+||.+. .++..+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46899999999999999999975321 11111 11 112222 456899999999532 36777889
Q ss_pred cCEEEEEEeCCCCCcccHH-HHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 139 ADLALLLIDGSYGFEMETF-EFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~-e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
||++|+|+|++..-..+.. .++..|.. ...| +|+|+||+|+...........+.+ + .. ...++|++|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~~~~~~~---~-~~--~~~~i~~iS 309 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEEREKRAALE---L-AA--LGGPVFLIS 309 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHHHHHHHH---H-Hh--cCCCEEEEE
Confidence 9999999999853222222 23333432 2556 456899999975332221111111 1 11 236899999
Q ss_pred cccCCcCChhHHHHHHHHHHhh
Q 010060 213 GLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~ 234 (519)
|+++ ..+..|+..|...
T Consensus 310 Aktg-----~GI~eL~~~L~~~ 326 (335)
T PRK12299 310 AVTG-----EGLDELLRALWEL 326 (335)
T ss_pred cCCC-----CCHHHHHHHHHHH
Confidence 9977 5677777666544
No 104
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.49 E-value=4.5e-13 Score=135.54 Aligned_cols=121 Identities=17% Similarity=0.321 Sum_probs=87.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc---cc-----------Ccccc------ccc-----cEEEEecCceeEEEEcCCCC-
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY---TK-----------HNVPE------VRG-----PITIVSGKQRRLQFVECPND- 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~---Tr-----------~~v~~------~~G-----~iti~~~~~~rl~fIDtPGd- 128 (519)
++|+|+||+|+|||||+++|+... .+ ..+.+ .+| .+..+.+.+..+.||||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 689999999999999999999642 11 00110 011 11123456789999999996
Q ss_pred -chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 129 -ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 129 -l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
+.. +..++..+|++|+|+|++.+++.++..++..+...++|.+ +|+||+|+... ....+.+.++..|
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~~a--~~~~~~~~l~~~l 151 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGR--DPLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccCCC--CHHHHHHHHHHHH
Confidence 444 7778899999999999999988888888888888899954 58999998642 2233445555544
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.49 E-value=5.9e-13 Score=124.12 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVDas~ 150 (519)
.+.|+++|++|+|||||+++|++........++.-.+..+......+.++||||. +..+ ...+..+|++++|+|++.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD 93 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 4689999999999999999999863211111111111122234678999999996 3443 345788999999999986
Q ss_pred C--CcccHHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHH
Q 010060 151 G--FEMETFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 151 g--~e~et~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
. +......+..++. ..+.| +++|+||+|+.... ...++.+.+... .......++|++||++| .++.
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g-----~gi~ 164 (173)
T cd04154 94 RLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-SEEEIREALELD--KISSHHWRIQPCSAVTG-----EGLL 164 (173)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC-CHHHHHHHhCcc--ccCCCceEEEeccCCCC-----cCHH
Confidence 5 2221112222222 24666 55689999997422 122222222110 00113568999999977 5677
Q ss_pred HHHHHHH
Q 010060 226 NLARFIS 232 (519)
Q Consensus 226 ~LlR~I~ 232 (519)
.+..++.
T Consensus 165 ~l~~~l~ 171 (173)
T cd04154 165 QGIDWLV 171 (173)
T ss_pred HHHHHHh
Confidence 7766654
No 106
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.48 E-value=3.3e-12 Score=145.64 Aligned_cols=221 Identities=16% Similarity=0.193 Sum_probs=136.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc---ccC-----cccc-----ccccEEEE----------ecCceeEEEEcCCCC-
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY---TKH-----NVPE-----VRGPITIV----------SGKQRRLQFVECPND- 128 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~-----~v~~-----~~G~iti~----------~~~~~rl~fIDtPGd- 128 (519)
..++|+|+||+++|||||+.+|+..+ ++. .+.+ ...++|+. ...+..+.|+||||+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 34799999999999999999998752 110 0000 00112221 123678999999995
Q ss_pred -chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC-----H----HHHHHHHHHHHH-
Q 010060 129 -ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD-----V----KKLRKTKQRLKH- 196 (519)
Q Consensus 129 -l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~-----~----k~l~~~kk~Lk~- 196 (519)
|.. +..++..+|.+|+|+|+..|++.++..++..+...++|. |+++||+|+... . ..+....+.+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~ 177 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKL 177 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 444 777899999999999999999999999999888889996 468999998621 1 112222222211
Q ss_pred ---hhhhh-------ccCCceEEEEecccCCcCChhH-----------------------------HHHHHHHHHhhcCC
Q 010060 197 ---RFWTE-------IYDGAKLFYLSGLIHGKYSKRE-----------------------------IRNLARFISVMKFP 237 (519)
Q Consensus 197 ---~f~~e-------~~~~~kVf~lSAl~g~~Y~~~e-----------------------------i~~LlR~I~~~~~r 237 (519)
++... .+....+++.||+.+..+.... ...|+..|....|.
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPs 257 (731)
T PRK07560 178 IKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPN 257 (731)
T ss_pred HHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCC
Confidence 11111 1223456677887653221110 01567778877777
Q ss_pred CCc---------ccc---------------CCCeE-EEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEe
Q 010060 238 PLS---------WRT---------------SHPYV-LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIA 292 (519)
Q Consensus 238 ~~~---------wR~---------------~~PYv-ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIp 292 (519)
|.. |.. ..|.+ .+-++.. .+ .+....+|.|..+.|+.|+.|.+.
T Consensus 258 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~---------d~--~~G~va~~RV~sGtL~~Gd~v~~~ 326 (731)
T PRK07560 258 PIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIV---------DP--HAGEVATGRVFSGTLRKGQEVYLV 326 (731)
T ss_pred hhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEE---------cC--CCCeEEEEEEEEeEEcCCCEEEEc
Confidence 752 110 11332 1222211 11 123567899999999999999888
Q ss_pred cCC-CeEEEeeecC
Q 010060 293 GVG-DYSLAGVTGL 305 (519)
Q Consensus 293 G~G-df~I~~I~~l 305 (519)
+.| ...|.+|..+
T Consensus 327 ~~~~~~~v~~i~~~ 340 (731)
T PRK07560 327 GAKKKNRVQQVGIY 340 (731)
T ss_pred CCCCceEeheehhh
Confidence 766 5567777654
No 107
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=6.2e-13 Score=144.65 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=89.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-----cEEEEecCceeEEEEcCCCCc----------hhHHHHhhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-----PITIVSGKQRRLQFVECPNDI----------NGMIDCAKIA 139 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-----~iti~~~~~~rl~fIDtPGdl----------~smld~ak~A 139 (519)
..|+|||+||||||||+|+|++... .+....+ .+-++.....+++|+||||.+ ..++..+..|
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999997521 1211111 111234455789999999953 2367778899
Q ss_pred CEEEEEEeCCCC------CcccH---HHHHHHH----------HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh
Q 010060 140 DLALLLIDGSYG------FEMET---FEFLNLM----------QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT 200 (519)
Q Consensus 140 DlVLLVVDas~g------~e~et---~e~L~~L----------~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~ 200 (519)
|++|+|||++.. ++... .++..+. ...+.|.+ +|+||+|+.........+...+..
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I-VVlNKiDL~da~el~e~l~~~l~~---- 312 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL-VVLNKIDVPDARELAEFVRPELEA---- 312 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE-EEEECccchhhHHHHHHHHHHHHH----
Confidence 999999999741 11111 1233322 12467755 589999997432222222222211
Q ss_pred hccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 201 EIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 201 e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
.+.++|++||+++ .++..|+..|...
T Consensus 313 ---~g~~Vf~ISA~tg-----eGLdEL~~~L~el 338 (500)
T PRK12296 313 ---RGWPVFEVSAASR-----EGLRELSFALAEL 338 (500)
T ss_pred ---cCCeEEEEECCCC-----CCHHHHHHHHHHH
Confidence 1468999999977 5666666555443
No 108
>PRK09866 hypothetical protein; Provisional
Probab=99.47 E-value=1.1e-12 Score=144.43 Aligned_cols=111 Identities=10% Similarity=0.114 Sum_probs=80.2
Q ss_pred ceeEEEEcCCCC-------chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCC--CeEEEEEEccCCCCCHH-
Q 010060 117 QRRLQFVECPND-------ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGL--PRVMGVLTHLDKFKDVK- 185 (519)
Q Consensus 117 ~~rl~fIDtPGd-------l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~Gi--P~VI~VlNKlDl~~~~k- 185 (519)
..+++|+||||- +.. |.+.+..||+||||+|+..++.....++++.++..+. | +++|+||+|+.+...
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 468999999993 333 7788999999999999998887778889999988774 6 667999999974221
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
....+.+.+...+..+..+...|||+||+.| ..+..|+..|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG-----~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWG-----YLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCC-----CCHHHHHHHHHh
Confidence 1233444443333334456889999999977 456666655544
No 109
>PRK12740 elongation factor G; Reviewed
Probab=99.47 E-value=4.3e-12 Score=143.35 Aligned_cols=207 Identities=17% Similarity=0.233 Sum_probs=138.0
Q ss_pred ECCCCCChHHHHHHHHhcccc----C------cccc------ccccEE------EEecCceeEEEEcCCCCch---hHHH
Q 010060 80 QGPPQVGKSLLIKSLIKHYTK----H------NVPE------VRGPIT------IVSGKQRRLQFVECPNDIN---GMID 134 (519)
Q Consensus 80 VG~pnvGKSTLIn~Ll~~~Tr----~------~v~~------~~G~it------i~~~~~~rl~fIDtPGdl~---smld 134 (519)
||++|+|||||+++|+..+.. . .+.+ .+| +| .+...+..+.||||||... .+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rg-iTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERG-ISITSAATTCEWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcC-CCeeeceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 699999999999999775311 0 0100 122 22 2345678999999999743 3677
Q ss_pred HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc------------
Q 010060 135 CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI------------ 202 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~------------ 202 (519)
++..||++|+|+|++.+...++..++..+...++|.++ |+||+|+... .+..+.+.++..|....
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~ii-v~NK~D~~~~--~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRII-FVNKMDRAGA--DFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEE-EEECCCCCCC--CHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 88999999999999998888888888888888999665 8999998742 22233333333221000
Q ss_pred -----------------------------------------------------------------------------cCC
Q 010060 203 -----------------------------------------------------------------------------YDG 205 (519)
Q Consensus 203 -----------------------------------------------------------------------------~~~ 205 (519)
...
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 013
Q ss_pred ceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCcccc----------------CCCe-EEEEEEEecCCccccccCCCC
Q 010060 206 AKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRT----------------SHPY-VLVDRFEDVTPPERVRMNNKC 268 (519)
Q Consensus 206 ~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~----------------~~PY-vladr~edit~~~~i~~~~~~ 268 (519)
.+||+.||++| .++..|+..|....|.|..... ..|. +++.++... + .
T Consensus 237 ~Pv~~gSA~~~-----~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~---------~-~ 301 (668)
T PRK12740 237 VPVFCGSALKN-----KGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDD---------P-F 301 (668)
T ss_pred EEEEeccccCC-----ccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeec---------C-C
Confidence 45778888876 6888899999888887753221 1233 223232211 1 1
Q ss_pred CceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCC
Q 010060 269 DRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLA 306 (519)
Q Consensus 269 ~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~ 306 (519)
.| ...+|.|..+.|+.|+.+++.+.+ .+.|.+|..+.
T Consensus 302 ~G-~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~ 339 (668)
T PRK12740 302 VG-KLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMH 339 (668)
T ss_pred CC-cEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeec
Confidence 23 457899999999999999887654 67777777553
No 110
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.3e-12 Score=125.82 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=98.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEe--cCceeEEEEcCCCC------------chhHHH---
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS--GKQRRLQFVECPND------------INGMID--- 134 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~--~~~~rl~fIDtPGd------------l~smld--- 134 (519)
....-||++|.+|||||||||+|++.-.-..++..+|.+.... .-...+.|||.||- ...++.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999642122222334222221 11234899999982 112222
Q ss_pred -HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 135 -CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 135 -~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.-..-..+++|||+..++...+.+++.++...|+|.+ +|+||+|.++..+. .+....++..+........-++.+|+
T Consensus 102 ~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~-vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss 179 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVI-VVLTKADKLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSS 179 (200)
T ss_pred hhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeE-EEEEccccCChhHH-HHHHHHHHHHhcCCCCccceEEEEec
Confidence 2244678999999999999989999999999999966 48999999975433 23333333333222222211666776
Q ss_pred ccCCcCChhHHHHHHHHHH
Q 010060 214 LIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~ 232 (519)
.++ .++..|...|.
T Consensus 180 ~~k-----~Gi~~l~~~i~ 193 (200)
T COG0218 180 LKK-----KGIDELKAKIL 193 (200)
T ss_pred ccc-----cCHHHHHHHHH
Confidence 654 34555555544
No 111
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=2.7e-12 Score=116.11 Aligned_cols=147 Identities=24% Similarity=0.351 Sum_probs=92.8
Q ss_pred EEEECCCCCChHHHHHHHHhccccCccccccc---cEEEEecCceeEEEEcCCCCc------------hh----HHHHhh
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG---PITIVSGKQRRLQFVECPNDI------------NG----MIDCAK 137 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G---~iti~~~~~~rl~fIDtPGdl------------~s----mld~ak 137 (519)
|+++|++|+|||||+|.|++..-........+ .++.. .....++|+||||.. .. .+....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF-NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE-EccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 79999999999999999994311111110001 01111 122389999999831 11 222334
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
.++++++|+|..........+++..+...+.| +++|+||+|+... .........+...+ .......++|++||+++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~Sa~~~- 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKK-SELAKALKEIKKEL-KLFEIDPPIILFSSLKG- 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCCh-HHHHHHHHHHHHHH-HhccCCCceEEEecCCC-
Confidence 67899999999877666666788888888888 5568999999753 23333333333322 11446678999999976
Q ss_pred cCChhHHHHHHHHHH
Q 010060 218 KYSKREIRNLARFIS 232 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~ 232 (519)
..+..+...|.
T Consensus 157 ----~~~~~l~~~l~ 167 (170)
T cd01876 157 ----QGIDELRALIE 167 (170)
T ss_pred ----CCHHHHHHHHH
Confidence 45666665554
No 112
>PRK11058 GTPase HflX; Provisional
Probab=99.47 E-value=1e-12 Score=141.21 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=89.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc--CccccccccEE--EEecCceeEEEEcCCCC-----------chhHHHHhhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGPIT--IVSGKQRRLQFVECPND-----------INGMIDCAKIA 139 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~it--i~~~~~~rl~fIDtPGd-----------l~smld~ak~A 139 (519)
+.|+|||+||||||||+|+|++.... ........+.+ +.......++|+||||. |.+++..+..|
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 46999999999999999999985311 00000011111 11223347899999995 22355667899
Q ss_pred CEEEEEEeCCCCCcccHH----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 140 DLALLLIDGSYGFEMETF----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
|++|+|+|++.+...+.. .+|..+...++| +++|+||+|+...... .. ... . .....++++||++
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~~--~~-~~~------~-~~~~~~v~ISAkt 346 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFEP--RI-DRD------E-ENKPIRVWLSAQT 346 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchhH--HH-HHH------h-cCCCceEEEeCCC
Confidence 999999999876433322 345544445677 5568999999743211 11 100 0 1112258899997
Q ss_pred CCcCChhHHHHHHHHHHhhc
Q 010060 216 HGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~~~ 235 (519)
| .++..|...|....
T Consensus 347 G-----~GIdeL~e~I~~~l 361 (426)
T PRK11058 347 G-----AGIPLLFQALTERL 361 (426)
T ss_pred C-----CCHHHHHHHHHHHh
Confidence 7 56777777776554
No 113
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.46 E-value=9.3e-13 Score=120.12 Aligned_cols=148 Identities=12% Similarity=0.120 Sum_probs=90.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCCC-
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSYG- 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~g- 151 (519)
.|+|+|++|||||||+++|++........+..-.+.........+.++|+||. +..++. .++.+|++++|+|++.+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 38999999999999999999874221111111112223334678999999996 334443 45889999999999864
Q ss_pred -CcccHHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHH
Q 010060 152 -FEMETFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNL 227 (519)
Q Consensus 152 -~e~et~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~L 227 (519)
+......+..++. ..+.| +++|+||+|+.... ...++.+.+.... ......+++++||++| .++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~gv~~~ 151 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL-SVSELIEKLGLEK--ILGRRWHIQPCSAVTG-----DGLDEG 151 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc-CHHHHHHhhChhh--ccCCcEEEEEeeCCCC-----CCHHHH
Confidence 2211112222323 24667 55689999997532 2233333332211 1223568999999977 456666
Q ss_pred HHHHH
Q 010060 228 ARFIS 232 (519)
Q Consensus 228 lR~I~ 232 (519)
...|.
T Consensus 152 ~~~l~ 156 (158)
T cd00878 152 LDWLL 156 (158)
T ss_pred HHHHh
Confidence 55543
No 114
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.46 E-value=1e-12 Score=120.46 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=87.3
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc-ccccccc--EEE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGP--ITI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~--iti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.|+|+|++|+|||||+++|++..-... ....... .++ .......+.++||||. +..++. .++.+|.+++|+|+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC
Confidence 689999999999999999997521110 0001001 111 1233467889999994 555543 57889999999999
Q ss_pred CCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+..-.-+. ..+++.......| +++|.||+|+........+....+...+ +.++|++||++| .+
T Consensus 82 ~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~~ 149 (164)
T smart00173 82 TDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVSTEEGKELARQW------GCPFLETSAKER-----VN 149 (164)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEcHHHHHHHHHHc------CCEEEEeecCCC-----CC
Confidence 75322111 1222222223566 5568999999753211111112222211 378999999977 56
Q ss_pred HHHHHHHHHhh
Q 010060 224 IRNLARFISVM 234 (519)
Q Consensus 224 i~~LlR~I~~~ 234 (519)
+..+...|...
T Consensus 150 i~~l~~~l~~~ 160 (164)
T smart00173 150 VDEAFYDLVRE 160 (164)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 115
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.46 E-value=2e-12 Score=116.38 Aligned_cols=138 Identities=24% Similarity=0.330 Sum_probs=89.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc---CccccccccEE-EEecCceeEEEEcCCCCch-----------hHHHHhhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPIT-IVSGKQRRLQFVECPNDIN-----------GMIDCAKIA 139 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~it-i~~~~~~rl~fIDtPGdl~-----------smld~ak~A 139 (519)
..|+++|++|+|||||+++|++.... ........... .+.....++.++||||... .+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 47999999999999999999986311 00000000011 1223456899999999411 244567899
Q ss_pred CEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 140 DLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|++++|+|++.........++.. ..+.| +++|+||+|+...... . ......++|++||.++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~-------~------~~~~~~~~~~~Sa~~~--- 142 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL-------L------SLLAGKPIIAISAKTG--- 142 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc-------c------cccCCCceEEEECCCC---
Confidence 99999999986554444444433 34566 5669999999853321 0 1224678999999866
Q ss_pred ChhHHHHHHHHHHh
Q 010060 220 SKREIRNLARFISV 233 (519)
Q Consensus 220 ~~~ei~~LlR~I~~ 233 (519)
..+..+...|..
T Consensus 143 --~~v~~l~~~l~~ 154 (157)
T cd04164 143 --EGLDELKEALLE 154 (157)
T ss_pred --CCHHHHHHHHHH
Confidence 566666666543
No 116
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=1.4e-12 Score=139.56 Aligned_cols=142 Identities=21% Similarity=0.235 Sum_probs=97.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-----cEEEEecCceeEEEEcCCCCch----------h-HHHHhhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-----PITIVSGKQRRLQFVECPNDIN----------G-MIDCAKI 138 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-----~iti~~~~~~rl~fIDtPGdl~----------s-mld~ak~ 138 (519)
+.|+|+|.+|||||||+|+|++.... .+....| .+......+..+.+|||||... . +..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 47999999999999999999986311 1111111 0112233457899999999532 1 3446789
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
||++|||+|++.++.....++..+++..+.| +|+|+||+|+....... .. ++ ..+...+|++||.+|
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~~~~----~~----~~--~lg~~~~~~iSa~~g-- 147 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEEADA----YE----FY--SLGLGEPYPISAEHG-- 147 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccchhhH----HH----HH--hcCCCCCEEEEeeCC--
Confidence 9999999999998888778888888888888 45689999976421111 11 11 113345789999977
Q ss_pred CChhHHHHHHHHHHh
Q 010060 219 YSKREIRNLARFISV 233 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 148 ---~gv~~l~~~I~~ 159 (435)
T PRK00093 148 ---RGIGDLLDAILE 159 (435)
T ss_pred ---CCHHHHHHHHHh
Confidence 567777776665
No 117
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.45 E-value=9.2e-13 Score=132.58 Aligned_cols=128 Identities=20% Similarity=0.386 Sum_probs=91.6
Q ss_pred EEEEECCCCCChHHHHHHHHhccc---cC-ccc------c------ccc-----cEEEEecCceeEEEEcCCCCc---hh
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT---KH-NVP------E------VRG-----PITIVSGKQRRLQFVECPNDI---NG 131 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T---r~-~v~------~------~~G-----~iti~~~~~~rl~fIDtPGdl---~s 131 (519)
+|+|+|++|+|||||+++|+.... +. .+. + .++ .+..+.....++++|||||.. ..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 489999999999999999986421 10 010 0 011 111223456789999999963 23
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
+..++..||++|+|+|++.+...++..++..+...++|.++ |+||+|+... ......+.++..| +.+++++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~ii-vvNK~D~~~~--~~~~~~~~l~~~~------~~~~~~~ 151 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRII-FINKMDRERA--DFDKTLAALQEAF------GRPVVPL 151 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE-EEECCccCCC--CHHHHHHHHHHHh------CCCeEEE
Confidence 77888999999999999999888888888888889999765 8999998753 3445556666555 3455555
Q ss_pred e
Q 010060 212 S 212 (519)
Q Consensus 212 S 212 (519)
+
T Consensus 152 ~ 152 (268)
T cd04170 152 Q 152 (268)
T ss_pred E
Confidence 4
No 118
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.45 E-value=3.9e-12 Score=123.66 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=92.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-----------c------ccccccEEE-------E----ecCceeEEEEcCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-----------V------PEVRGPITI-------V----SGKQRRLQFVECP 126 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-----------v------~~~~G~iti-------~----~~~~~rl~fIDtP 126 (519)
++|+|+|++++|||||+++|+....... . ....| +++ . ......+.|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g-iti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERG-ISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcC-ccccccceeEEEEcCCCCEEEEEEEECC
Confidence 4799999999999999999997531100 0 00111 222 1 1235789999999
Q ss_pred CC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC------CH---HHHHHHHHHH
Q 010060 127 ND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK------DV---KKLRKTKQRL 194 (519)
Q Consensus 127 Gd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~------~~---k~l~~~kk~L 194 (519)
|+ +. .+..++..+|++|+|+|++.+...++.+++..+...++|. ++|+||+|++. .. ..+.+..+.+
T Consensus 80 G~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 80 GHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPI-VLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred CCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 96 43 3677889999999999999888777777777777778884 46899999861 11 2344445555
Q ss_pred HHhhhhh--------ccCCceEEEEecccC
Q 010060 195 KHRFWTE--------IYDGAKLFYLSGLIH 216 (519)
Q Consensus 195 k~~f~~e--------~~~~~kVf~lSAl~g 216 (519)
...+..- .+....|+..||..+
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~ 188 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFG 188 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCC
Confidence 4443211 223344777788755
No 119
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.45 E-value=1.8e-12 Score=134.89 Aligned_cols=146 Identities=23% Similarity=0.281 Sum_probs=90.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC---ccccccccEEEEecC-ceeEEEEcCCCCch----------hHHHHhhccC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH---NVPEVRGPITIVSGK-QRRLQFVECPNDIN----------GMIDCAKIAD 140 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---~v~~~~G~iti~~~~-~~rl~fIDtPGdl~----------smld~ak~AD 140 (519)
.-|+|||+||||||||+++|+...... +.++....+-++... ..+++|+|+||.+. .++..+..||
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 468999999999999999999863210 011111111122223 37899999999531 2567778899
Q ss_pred EEEEEEeCCCC---CcccHH-HHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 141 LALLLIDGSYG---FEMETF-EFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 141 lVLLVVDas~g---~e~et~-e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
++|+|+|++.. -..+.+ .+++.|.. ...|.+ +|+||+|+... ....+..+.+.+.+ +.++|++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I-IV~NK~DL~~~-~~~~~~~~~l~~~~------~~~vi~i 309 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI-VVLNKIDLLDE-EELAELLKELKKAL------GKPVFPI 309 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE-EEEeCccCCCh-HHHHHHHHHHHHHc------CCcEEEE
Confidence 99999999753 111111 22222322 256654 58999999753 33333333333221 3579999
Q ss_pred ecccCCcCChhHHHHHHHHHHh
Q 010060 212 SGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
||+++ ..+..++..|..
T Consensus 310 SAktg-----~GI~eL~~~I~~ 326 (329)
T TIGR02729 310 SALTG-----EGLDELLYALAE 326 (329)
T ss_pred EccCC-----cCHHHHHHHHHH
Confidence 99976 567777776654
No 120
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.45 E-value=1.1e-11 Score=136.42 Aligned_cols=108 Identities=19% Similarity=0.336 Sum_probs=82.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc---c----------C-ccc------cccccEEE------EecCceeEEEEcCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT---K----------H-NVP------EVRGPITI------VSGKQRRLQFVECP 126 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r----------~-~v~------~~~G~iti------~~~~~~rl~fIDtP 126 (519)
..++|+|+||+|+|||||+++|+.... + . .+. ..+| +++ +.+.+..+.|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rg-iSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRG-ISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhC-CceeeeeEEEEECCEEEEEEECC
Confidence 357999999999999999999985310 0 0 001 0112 222 34567889999999
Q ss_pred CC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 127 ND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 127 Gd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
|+ +.. +..++..+|++|+|+|++.+++.++..++..+...++| +|+++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccc
Confidence 96 444 77788999999999999999998888999998889999 456899999864
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.45 E-value=1.2e-12 Score=122.70 Aligned_cols=150 Identities=11% Similarity=0.128 Sum_probs=91.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~ 150 (519)
...|+++|++|+|||||+++|+...-.....++...+.........+.|+|+||. +..++ ..++.||++|||+|++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~ 94 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD 94 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 4689999999999999999998642111111111112223344678999999996 44444 34789999999999986
Q ss_pred CC--cccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHH
Q 010060 151 GF--EMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 151 g~--e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
.. .....++..+++. .+.| +++|+||+|+.... ...++.+.+...... ....++|++||++| .++.
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~--~~~~~~~~~SA~~g-----~gi~ 165 (174)
T cd04153 95 RERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAM-TPAEISESLGLTSIR--DHTWHIQGCCALTG-----EGLP 165 (174)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCC-CHHHHHHHhCccccc--CCceEEEecccCCC-----CCHH
Confidence 42 2112234444433 2456 55689999986421 122222222100000 12347899999977 5677
Q ss_pred HHHHHHH
Q 010060 226 NLARFIS 232 (519)
Q Consensus 226 ~LlR~I~ 232 (519)
.+...|+
T Consensus 166 e~~~~l~ 172 (174)
T cd04153 166 EGLDWIA 172 (174)
T ss_pred HHHHHHh
Confidence 7776664
No 122
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.45 E-value=1.1e-12 Score=122.61 Aligned_cols=151 Identities=10% Similarity=0.075 Sum_probs=91.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGS 149 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas 149 (519)
+...|+++|++|+|||||+++|..........+..-.+.........+.++||||. +..++. .++.||++|||+|++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t 87 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 87 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC
Confidence 34689999999999999999997542111111111112223345678999999996 444443 468999999999998
Q ss_pred CC--CcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 150 YG--FEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 150 ~g--~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
.. ++.....+...+.. .+.| +++|.||+|+.... ...++.+.+.- .........+|++||++| .++
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~--~~~~~~~~~~~~~SAk~g-----~gv 158 (168)
T cd04149 88 DRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAM-KPHEIQEKLGL--TRIRDRNWYVQPSCATSG-----DGL 158 (168)
T ss_pred chhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCC-CHHHHHHHcCC--CccCCCcEEEEEeeCCCC-----CCh
Confidence 64 32222233344432 3566 66689999986421 11222222210 000112346899999988 567
Q ss_pred HHHHHHHH
Q 010060 225 RNLARFIS 232 (519)
Q Consensus 225 ~~LlR~I~ 232 (519)
.+++.+|+
T Consensus 159 ~~~~~~l~ 166 (168)
T cd04149 159 YEGLTWLS 166 (168)
T ss_pred HHHHHHHh
Confidence 77777765
No 123
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.45 E-value=2.4e-12 Score=118.86 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=88.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
+.|+|+|.+|||||||+++|+...-... .......+ .+ .......+.++||||. +..++. .++.+|++|||+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 3689999999999999999987521111 11110001 11 1233557889999995 445444 578999999999
Q ss_pred eCCCCCcccH-HHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 147 DGSYGFEMET-FEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
|++.+...+. ..++..++.. ++| +++|+||+|+... ...+.. .+... .+.++|++||++| .+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~--~~~~~~-~~~~~------~~~~~~~~Sa~~~-----~g 145 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS--VTQKKF-NFAEK------HNLPLYYVSAADG-----TN 145 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh--HHHHHH-HHHHH------cCCeEEEEeCCCC-----CC
Confidence 9986543222 2445555443 567 5568999998531 111111 11111 2468999999977 56
Q ss_pred HHHHHHHHHhh
Q 010060 224 IRNLARFISVM 234 (519)
Q Consensus 224 i~~LlR~I~~~ 234 (519)
+..+...+...
T Consensus 146 v~~l~~~l~~~ 156 (161)
T cd04124 146 VVKLFQDAIKL 156 (161)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 124
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.45 E-value=1.3e-12 Score=119.18 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=89.7
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g 151 (519)
.|+++|++|||||||+++|+.........++.-.+..+ ......+.++||||. +..++ ..+..||++|||+|++.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 37899999999999999999864222211111111122 234568999999996 44444 357889999999999865
Q ss_pred Cc--ccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHH
Q 010060 152 FE--METFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRN 226 (519)
Q Consensus 152 ~e--~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~ 226 (519)
.. .....+..+++. .+.| +++|+||+|+.... ...++...+...-+ ......+++++||++| .++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~Sa~~~-----~gv~~ 152 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGAL-TAEEITRRFKLKKY-CSDRDWYVQPCSAVTG-----EGLAE 152 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCc-CHHHHHHHcCCccc-CCCCcEEEEecccccC-----CChHH
Confidence 32 111233333332 4677 55689999986321 12223222210000 0112357899999977 67777
Q ss_pred HHHHHH
Q 010060 227 LARFIS 232 (519)
Q Consensus 227 LlR~I~ 232 (519)
++..|.
T Consensus 153 ~~~~i~ 158 (160)
T cd04156 153 AFRKLA 158 (160)
T ss_pred HHHHHh
Confidence 776664
No 125
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.45 E-value=1.6e-12 Score=118.52 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=88.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc-cCccccccccE--EE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+|+|.+|||||||+++++...- .....+....+ ++ ..+....+.|+||||. +..+.. .++.+|.+|||+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 5799999999999999999997521 11111111111 11 1233457889999994 545443 4688999999999
Q ss_pred CCCCCcccH-HHHHHHHH----hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMET-FEFLNLMQ----NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~----~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+..-.-+. ..++..+. ..++| +|+|.||+|+........+....+...+ +.++|++||++| .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVSREEGQALARQW------GCPFYETSAKSK-----I 149 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceecHHHHHHHHHHc------CCeEEEecCCCC-----C
Confidence 975322111 12222222 23567 5568999998642211111122222211 278999999977 5
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..++..|+.
T Consensus 150 ~v~~l~~~l~~ 160 (163)
T cd04136 150 NVDEVFADLVR 160 (163)
T ss_pred CHHHHHHHHHH
Confidence 77777776654
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.44 E-value=1.8e-12 Score=123.03 Aligned_cols=153 Identities=12% Similarity=0.031 Sum_probs=92.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCc--hhHH-HHhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDI--NGMI-DCAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl--~sml-d~ak~ADlVLLVVDas~ 150 (519)
...|+++|++|||||||+++|.+.......++....+..+...+..+.++|+||.. ..++ ..+..||++|+|+|++.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~ 96 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD 96 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc
Confidence 47899999999999999999998521111111111111223346789999999963 3333 45789999999999975
Q ss_pred CC--cccHHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh-----hccCCceEEEEecccCCcCC
Q 010060 151 GF--EMETFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT-----EIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 151 g~--e~et~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~-----e~~~~~kVf~lSAl~g~~Y~ 220 (519)
.- .....++..++. ..+.| +++|+||+|+.... ...++.+.|.-.... .......+|++||+++
T Consensus 97 ~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~---- 170 (184)
T smart00178 97 KERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAA-SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR---- 170 (184)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCC-CHHHHHHHcCCCcccccccccCCceeEEEEeecccC----
Confidence 42 111113333332 24777 55689999986321 122333333100000 0113456999999976
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+++.|..
T Consensus 171 -~g~~~~~~wl~~ 182 (184)
T smart00178 171 -MGYGEGFKWLSQ 182 (184)
T ss_pred -CChHHHHHHHHh
Confidence 677777777754
No 127
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.44 E-value=1.7e-12 Score=118.27 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcc-cccc---ccEEEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVR---GPITIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~---G~iti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
..|+|+|++|+|||||+++|++....... .... ....+. .+...++.++|+||. +..+ ...++.||++|+|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 36999999999999999999976321111 1000 011111 123357899999995 3333 33568899999999
Q ss_pred eCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 147 DGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|++.+...+.. .++..+.. .++| +++|+||+|+........+..+.+.+. .+.+++++||.++ .
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~-----~ 148 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVSREEAEAFAEE------HGLPFFETSAKTN-----T 148 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCCHHHHHHHHHH------cCCeEEEEeCCCC-----C
Confidence 99764333222 23344333 3566 556899999875221111112222111 2456999999876 4
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..++..|...
T Consensus 149 ~i~~l~~~i~~~ 160 (164)
T smart00175 149 NVEEAFEELARE 160 (164)
T ss_pred CHHHHHHHHHHH
Confidence 677777666554
No 128
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=2.3e-12 Score=119.05 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
..|+++|.+|+|||||+++|+...-........| .+ ++. ......+.+|||||. +..+ ...++.+|++|+|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 5799999999999999999998632111111111 11 121 123467899999995 3343 34578999999999
Q ss_pred eCCCCCccc-HHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 147 DGSYGFEME-TFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 147 Das~g~e~e-t~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|++..-.-+ ..+.+..+... ..| +++|.||+|+........+....+...+ +.++|.+||++| .
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVSSERGRQLADQL------GFEFFEASAKEN-----I 149 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccCHHHHHHHHHHc------CCEEEEEECCCC-----C
Confidence 997532211 12344444332 344 6779999999753221111112222222 347999999977 5
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..++..+...
T Consensus 150 gv~~l~~~l~~~ 161 (165)
T cd01865 150 NVKQVFERLVDI 161 (165)
T ss_pred CHHHHHHHHHHH
Confidence 677777666544
No 129
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=3.6e-12 Score=136.68 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=89.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC---ccccccccEEEEecC-ceeEEEEcCCCCc----------hhHHHHhhccC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH---NVPEVRGPITIVSGK-QRRLQFVECPNDI----------NGMIDCAKIAD 140 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---~v~~~~G~iti~~~~-~~rl~fIDtPGdl----------~smld~ak~AD 140 (519)
.-|+|||+||||||||||+|++...+- +.++....+-++... ..+++|+|+||.+ ...+..+..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 389999999999999999999863210 011110111122222 5789999999942 23567788899
Q ss_pred EEEEEEeCCCC--Ccc-cH-HHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 141 LALLLIDGSYG--FEM-ET-FEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 141 lVLLVVDas~g--~e~-et-~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
++|+|+|++.. ..+ +. ..++..|.. .+.|.+ +|+||+|+....+.+. .+.+.+ . .++|++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL~~~~e~l~----~l~~~l-----~-~~i~~i 307 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI-VVANKMDLPEAEENLE----EFKEKL-----G-PKVFPI 307 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE-EEEeCCCCcCCHHHHH----HHHHHh-----C-CcEEEE
Confidence 99999999742 111 11 133344433 367755 5899999853322222 222222 2 579999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||+++ .++..|...|...
T Consensus 308 SA~tg-----eGI~eL~~~L~~~ 325 (424)
T PRK12297 308 SALTG-----QGLDELLYAVAEL 325 (424)
T ss_pred eCCCC-----CCHHHHHHHHHHH
Confidence 99977 5677777665544
No 130
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.44 E-value=2.5e-12 Score=117.25 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=87.4
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccc----cEEE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
.|+++|++|||||||+++|++...........+ ...+ +.+....+.+|||||. +..++ ..++.+|++|+|+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998632111000001 0011 1223357899999995 33333 45789999999999
Q ss_pred CCCCCcccH-HHHHHHH-HhcC--CCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 148 GSYGFEMET-FEFLNLM-QNHG--LPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 148 as~g~e~et-~e~L~~L-~~~G--iP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
++.+-..+. ...+..+ +..+ .| +++|+||+|+........+....+... .+.+++++||.++ .+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~-----~~ 149 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQVSTEEGEKKAKE------LNAMFIETSAKAG-----HN 149 (161)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCccCHHHHHHHHHH------hCCEEEEEeCCCC-----CC
Confidence 975422111 1333333 3333 66 666899999953222111112222111 2478999999977 56
Q ss_pred HHHHHHHHHh
Q 010060 224 IRNLARFISV 233 (519)
Q Consensus 224 i~~LlR~I~~ 233 (519)
+..+...|+.
T Consensus 150 v~~l~~~i~~ 159 (161)
T cd01861 150 VKELFRKIAS 159 (161)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 131
>PRK04213 GTP-binding protein; Provisional
Probab=99.44 E-value=3.1e-12 Score=122.12 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=88.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE--ecCceeEEEEcCCCC-------------chh----HH-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV--SGKQRRLQFVECPND-------------ING----MI- 133 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~--~~~~~rl~fIDtPGd-------------l~s----ml- 133 (519)
...|+++|++|||||||+|+|++.... .....| +|.. ......+++|||||. +.. .+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~-~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPG-VTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCc-eeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999986421 111112 2221 111126899999992 111 11
Q ss_pred HHhhccCEEEEEEeCCCCCc-----------ccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh-
Q 010060 134 DCAKIADLALLLIDGSYGFE-----------METFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE- 201 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e-----------~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e- 201 (519)
..+..+|++++|+|++.... ..+.+++..+...++|.+ +|+||+|+.... .+....+...+-..
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~i-iv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPI-VAVNKMDKIKNR---DEVLDEIAERLGLYP 161 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeE-EEEECccccCcH---HHHHHHHHHHhcCCc
Confidence 24567899999999964211 123466777777788854 589999997532 11222232222100
Q ss_pred ccC--CceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 202 IYD--GAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 202 ~~~--~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
.+. +.++|++||++| ++..+...|...
T Consensus 162 ~~~~~~~~~~~~SA~~g------gi~~l~~~l~~~ 190 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG------GIEELKEAIRKR 190 (201)
T ss_pred cccccCCcEEEEecccC------CHHHHHHHHHHh
Confidence 011 236899999854 566666666554
No 132
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.43 E-value=3.7e-12 Score=131.95 Aligned_cols=217 Identities=19% Similarity=0.300 Sum_probs=151.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc-------ccCcc-----ccccc----------------cEEEEe--------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY-------TKHNV-----PEVRG----------------PITIVS-------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~-------Tr~~v-----~~~~G----------------~iti~~-------- 114 (519)
.++..+|++.|+.++|||||+.+|+-.. ||.-+ ...+| ++.+..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4566899999999999999999988531 11100 00011 111110
Q ss_pred ----cCceeEEEEcCCCC---chhHHHHh--hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH
Q 010060 115 ----GKQRRLQFVECPND---INGMIDCA--KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 115 ----~~~~rl~fIDtPGd---l~smld~a--k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k 185 (519)
.-.+-+.|+||.|+ +..+|.++ +..|..+|++-|+.|...-+.|+|-++.+.++|. |+|+||+|+..+ +
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPv-iVvvTK~D~~~d-d 271 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPV-IVVVTKIDMVPD-D 271 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCE-EEEEEecccCcH-H
Confidence 11245789999997 55677765 6799999999999999999999999999999994 568999999854 4
Q ss_pred HHHHHHHHHHHhhhh---------------------hcc-CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCcccc
Q 010060 186 KLRKTKQRLKHRFWT---------------------EIY-DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRT 243 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~---------------------e~~-~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~ 243 (519)
.++.+.+++...+.- ... .-.|+|++|+.+| .++.-|.+|+.....+. .|..
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg-----~GldlL~e~f~~Lp~rr-~~~d 345 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG-----EGLDLLDEFFLLLPKRR-RWDD 345 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC-----ccHHHHHHHHHhCCccc-ccCC
Confidence 555555555443210 001 1468999999988 45555557776554444 8888
Q ss_pred CCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC--Ce---EEEeeecCC
Q 010060 244 SHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG--DY---SLAGVTGLA 306 (519)
Q Consensus 244 ~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G--df---~I~~I~~l~ 306 (519)
..|| |.+|++..++. - ..++.|.|..+.|..|+.+.|-.+. -| .|++|+.--
T Consensus 346 ~g~flmYId~iYsVtG----------V-GtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~ 403 (527)
T COG5258 346 EGPFLMYIDKIYSVTG----------V-GTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHH 403 (527)
T ss_pred CCCeEEEEEeeEEEee----------e-EEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEee
Confidence 8877 56888887753 2 3578999999999999999885543 33 467776533
No 133
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.43 E-value=2.1e-12 Score=146.88 Aligned_cols=145 Identities=18% Similarity=0.263 Sum_probs=100.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEE------EecCceeEEEEcCCCCc------h----h-HHHHh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI------VSGKQRRLQFVECPNDI------N----G-MIDCA 136 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti------~~~~~~rl~fIDtPGdl------~----s-mld~a 136 (519)
...|+|+|.||||||||+|+|++... ..+....| +|. ....+..+.||||||.. . . +..++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pG-vT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPG-VTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCC-eeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 36899999999999999999997531 11111122 221 12345689999999932 1 1 34567
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..||++|||+|++.++.....+++..|+..+.|. |+|+||+|+...... .. .+|.. ....+|++||++|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pv-IlV~NK~D~~~~~~~---~~-----~~~~l--g~~~~~~iSA~~g 421 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPV-VLAVNKIDDQASEYD---AA-----EFWKL--GLGEPYPISAMHG 421 (712)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECcccccchhh---HH-----HHHHc--CCCCeEEEECCCC
Confidence 8999999999999988888788888898889985 458999998642111 11 12211 2234689999977
Q ss_pred CcCChhHHHHHHHHHHhhcC
Q 010060 217 GKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..|+..|....+
T Consensus 422 -----~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 422 -----RGVGDLLDEALDSLK 436 (712)
T ss_pred -----CCchHHHHHHHHhcc
Confidence 677888877766543
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.43 E-value=1.8e-12 Score=122.28 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=92.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCch--hH-HHHhhccCEEEEEEeCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDIN--GM-IDCAKIADLALLLIDGS 149 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~--sm-ld~ak~ADlVLLVVDas 149 (519)
....|+++|++|+|||||+++|.+..-.....+.......+......+.++|+||... .+ ...+..+|.+++|+|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECC
Confidence 3578899999999999999999975311111111111112233457889999999633 33 34568999999999997
Q ss_pred CC--CcccHHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhh---------hhccCCceEEEEeccc
Q 010060 150 YG--FEMETFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFW---------TEIYDGAKLFYLSGLI 215 (519)
Q Consensus 150 ~g--~e~et~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~---------~e~~~~~kVf~lSAl~ 215 (519)
.. +......+..+++ ..+.| +++|+||+|+... -...++.+.+...-. .......++|++||++
T Consensus 98 ~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 98 DPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred cHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 53 2211123333333 24567 5568999998642 122333333321000 0111235789999997
Q ss_pred CCcCChhHHHHHHHHHHh
Q 010060 216 HGKYSKREIRNLARFISV 233 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~ 233 (519)
| .++..+.++|+.
T Consensus 176 ~-----~gv~e~~~~l~~ 188 (190)
T cd00879 176 R-----QGYGEAFRWLSQ 188 (190)
T ss_pred C-----CChHHHHHHHHh
Confidence 7 678888877764
No 135
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.43 E-value=3.2e-12 Score=116.54 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC-cccccc---ccEEEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVR---GPITIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~---G~iti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
+.|+|+|++|||||||+++|++..... ....+. +...+. .+....+.|+||||. +..+. ..++.||++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 368999999999999999999863111 111110 111111 234568899999995 33333 3468899999999
Q ss_pred eCCCCCcccH-HHHHHHHHh--------cCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 147 DGSYGFEMET-FEFLNLMQN--------HGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~--------~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|++..-..+. ...+..+.. .+.| +++|.||.|+..... ...+..+ +.. . .+.++|.+||++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~-~~~----~--~~~~~~~~Sa~~~ 152 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAVSEDEGRL-WAE----S--KGFKYFETSACTG 152 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcccccccCHHHHHH-HHH----H--cCCeEEEEECCCC
Confidence 9985422111 122322222 2344 677999999973211 1111111 111 1 1367999999977
Q ss_pred CcCChhHHHHHHHHHHhh
Q 010060 217 GKYSKREIRNLARFISVM 234 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 153 -----~gi~~l~~~l~~~ 165 (168)
T cd04119 153 -----EGVNEMFQTLFSS 165 (168)
T ss_pred -----CCHHHHHHHHHHH
Confidence 5777777666544
No 136
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.43 E-value=3.2e-12 Score=115.77 Aligned_cols=140 Identities=20% Similarity=0.250 Sum_probs=85.1
Q ss_pred EECCCCCChHHHHHHHHhccccC-ccc--cccccEEEEecCceeEEEEcCCCC--chh------H-HHHh--hccCEEEE
Q 010060 79 VQGPPQVGKSLLIKSLIKHYTKH-NVP--EVRGPITIVSGKQRRLQFVECPND--ING------M-IDCA--KIADLALL 144 (519)
Q Consensus 79 VVG~pnvGKSTLIn~Ll~~~Tr~-~v~--~~~G~iti~~~~~~rl~fIDtPGd--l~s------m-ld~a--k~ADlVLL 144 (519)
|+|++|+|||||+++|++..... ... +..-....+...+..+.||||||. +.. + ...+ ..+|++|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999863111 000 000011122334568999999994 221 1 2223 48999999
Q ss_pred EEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 145 LIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 145 VVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
|+|++..- ....++..+...++|. ++|+||+|+..... .....+.+...+ +.++|++||.++ .++
T Consensus 81 v~d~~~~~--~~~~~~~~~~~~~~~~-iiv~NK~Dl~~~~~-~~~~~~~~~~~~------~~~~~~iSa~~~-----~~~ 145 (158)
T cd01879 81 VVDATNLE--RNLYLTLQLLELGLPV-VVALNMIDEAEKRG-IKIDLDKLSELL------GVPVVPTSARKG-----EGI 145 (158)
T ss_pred EeeCCcch--hHHHHHHHHHHcCCCE-EEEEehhhhccccc-chhhHHHHHHhh------CCCeEEEEccCC-----CCH
Confidence 99997532 2234444555678885 46899999975321 111122333322 468999999876 456
Q ss_pred HHHHHHHHh
Q 010060 225 RNLARFISV 233 (519)
Q Consensus 225 ~~LlR~I~~ 233 (519)
..+...+..
T Consensus 146 ~~l~~~l~~ 154 (158)
T cd01879 146 DELKDAIAE 154 (158)
T ss_pred HHHHHHHHH
Confidence 666655543
No 137
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=4.7e-12 Score=116.69 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=87.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
+.|+|+|++|+|||||+++|+...-........+ .+ ++. .+....+.++||||. +..+ ...++.+|++|+|+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~ 83 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999986421111111111 01 111 122357899999996 3333 34567899999999
Q ss_pred eCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 147 DGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|++.+...+. ...+..+.. .++| +|+|.||+|+........+....+.+. .....++++||++| .
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~-----~ 152 (165)
T cd01864 84 DITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREVLFEEACTLAEK-----NGMLAVLETSAKES-----Q 152 (165)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCHHHHHHHHHH-----cCCcEEEEEECCCC-----C
Confidence 9986432222 234444433 3566 556899999975322111111222221 23457899999977 4
Q ss_pred HHHHHHHHHH
Q 010060 223 EIRNLARFIS 232 (519)
Q Consensus 223 ei~~LlR~I~ 232 (519)
++..+...++
T Consensus 153 ~v~~~~~~l~ 162 (165)
T cd01864 153 NVEEAFLLMA 162 (165)
T ss_pred CHHHHHHHHH
Confidence 5555555444
No 138
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.43 E-value=2.1e-12 Score=139.65 Aligned_cols=140 Identities=24% Similarity=0.304 Sum_probs=93.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccccccc----EE-EEecCceeEEEEcCCCC--c---------hhHHHHh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP----IT-IVSGKQRRLQFVECPND--I---------NGMIDCA 136 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~----it-i~~~~~~rl~fIDtPGd--l---------~smld~a 136 (519)
.+..|+++|+||+|||||+|+|++... ..+....|. ++ .+...+..+.++||||. . ..++..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 346899999999999999999998631 111111221 11 12234568999999994 1 2245568
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..||++|+|+|++.+...+..+++.. ..+.| +++|+||+|+...... . .....+++++||++|
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~-~-------------~~~~~~~i~iSAktg 355 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDL-E-------------EENGKPVIRISAKTG 355 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchh-h-------------hccCCceEEEEeeCC
Confidence 89999999999987765554444443 45677 4568999999753211 1 112467899999977
Q ss_pred CcCChhHHHHHHHHHHhhc
Q 010060 217 GKYSKREIRNLARFISVMK 235 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~ 235 (519)
.++..|...|....
T Consensus 356 -----~GI~~L~~~L~~~l 369 (449)
T PRK05291 356 -----EGIDELREAIKELA 369 (449)
T ss_pred -----CCHHHHHHHHHHHH
Confidence 56777776665543
No 139
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.43 E-value=3.4e-12 Score=115.67 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=86.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
..|+|+|.+|||||||+++|++..-... ..+....+. + +......+.+|||||. +..+. ..++.+|.+++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 4789999999999999999997531111 111100111 1 1223355788999995 44544 35678999999999
Q ss_pred CCCCCcccHH-----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+.....+.. .++......++| +++|.||+|+............ +... .+.++|++||++| .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~~-----~ 148 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVSSRQGQD-LAKS------YGIPYIETSAKTR-----Q 148 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceecHHHHHH-HHHH------hCCeEEEecCCCC-----C
Confidence 8743221111 222222224667 5568999999753211122222 1111 1457999999977 5
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..++..|..
T Consensus 149 gi~~l~~~l~~ 159 (162)
T cd04138 149 GVEEAFYTLVR 159 (162)
T ss_pred CHHHHHHHHHH
Confidence 67777766653
No 140
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.42 E-value=2.9e-12 Score=118.44 Aligned_cols=146 Identities=9% Similarity=0.096 Sum_probs=88.5
Q ss_pred EEEEECCCCCChHHHHHHHHhc-cccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSYG 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~g 151 (519)
.|+++|.+|||||||+++|... +. ...++..-.++........+.++||||. +..++. .++.||++|||+|++..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 6899999999999999999643 32 1111111112223345678999999996 445544 46999999999999753
Q ss_pred --CcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc-cCCceEEEEecccCCcCChhHHH
Q 010060 152 --FEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI-YDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 152 --~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~-~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
++....++..++.. ...| +++|.||+|+..... ..++.+.+. + ... .....+|++||++| .++.
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i~~~~~--~-~~~~~~~~~~~~~Sak~g-----~gv~ 150 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AAEVTDKLG--L-HSLRNRNWYIQATCATSG-----DGLY 150 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HHHHHHHhC--c-cccCCCCEEEEEeeCCCC-----CCHH
Confidence 22222234444432 2355 667899999864211 122222221 0 111 12346789999987 5677
Q ss_pred HHHHHHH
Q 010060 226 NLARFIS 232 (519)
Q Consensus 226 ~LlR~I~ 232 (519)
+++.+|.
T Consensus 151 ~~~~~l~ 157 (159)
T cd04150 151 EGLDWLS 157 (159)
T ss_pred HHHHHHh
Confidence 7776654
No 141
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.42 E-value=3e-12 Score=118.79 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=89.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEEEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
-..|+|+|.+|||||||+++|++...........| ...+. .+....+.++||||. +..+ ...++.+|++|||
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 36899999999999999999997631111000111 11111 223457899999995 4443 3467899999999
Q ss_pred EeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++....-+.. .++..++. .++| +|+|.||+|+...... ..+...... . .+..+|++||+.+
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~e~Sa~~~---- 151 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREVSYEEGEAFAK-----E--HGLIFMETSAKTA---- 151 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCHHHHHHHHH-----H--cCCEEEEEeCCCC----
Confidence 999843222111 34444433 2556 5668999999742211 112211111 1 2467899999976
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++..++..++..
T Consensus 152 -~~i~~~~~~~~~~ 164 (168)
T cd01866 152 -SNVEEAFINTAKE 164 (168)
T ss_pred -CCHHHHHHHHHHH
Confidence 5666666555543
No 142
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.42 E-value=2.7e-12 Score=119.63 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=91.1
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcccccccc-EEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-ITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g 151 (519)
.|+++|+++||||||+++|.+........++ |. ...+......+.++||||. +..++ ..+..||++|+|+|++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~-g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTV-GFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcc-cceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 3799999999999999999987432222221 21 1122345678999999996 44443 467899999999999864
Q ss_pred Cccc-HHHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHH-HhhhhhccCCceEEEEecccC-CcCChhHH
Q 010060 152 FEME-TFEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLK-HRFWTEIYDGAKLFYLSGLIH-GKYSKREI 224 (519)
Q Consensus 152 ~e~e-t~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk-~~f~~e~~~~~kVf~lSAl~g-~~Y~~~ei 224 (519)
...+ ....+..+.. .+.| +++|+||+|+.... ...++.+.+. ..+..+......++++||++| +.....++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~ 157 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSI 157 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCH
Confidence 2211 1223333322 3667 55689999986532 1222332221 011111112357889999976 11112456
Q ss_pred HHHHHHHH
Q 010060 225 RNLARFIS 232 (519)
Q Consensus 225 ~~LlR~I~ 232 (519)
...+++|.
T Consensus 158 ~~~~~wl~ 165 (167)
T cd04161 158 VEGLRWLL 165 (167)
T ss_pred HHHHHHHh
Confidence 66666664
No 143
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.42 E-value=1.8e-12 Score=120.82 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=91.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC-
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG- 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g- 151 (519)
.|+++|+++||||||+++|++........+..-.+..+......+.++||||. +..++ ..+..||+++||+|++..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 37899999999999999999863222222111112223445678999999996 33444 456899999999999754
Q ss_pred -CcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCceEEEEecccCCcCChhHHH
Q 010060 152 -FEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 152 -~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
++.....+..++.. .+.| +++|.||+|+... -...+..+.+ ... .+. ....++++||++| .++.
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~~~Sa~~g-----~gv~ 150 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSVEEMTELL-SLH--KLCCGRSWYIQGCDARSG-----MGLY 150 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCHHHHHHHh-CCc--cccCCCcEEEEeCcCCCC-----CCHH
Confidence 32222233334332 2355 6678999998632 1122222222 100 111 1236788999987 5677
Q ss_pred HHHHHHHhh
Q 010060 226 NLARFISVM 234 (519)
Q Consensus 226 ~LlR~I~~~ 234 (519)
++...|+..
T Consensus 151 ~~f~~l~~~ 159 (169)
T cd04158 151 EGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHH
Confidence 777777654
No 144
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.42 E-value=3.1e-12 Score=117.56 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=87.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc-cCccccccccEE--E-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+++|.+|||||||+++++.... .....++...+. + ..+....+.++||||. +..+.+ .++.+|++|||+|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 5799999999999999999986421 111111111111 1 1223456789999995 555554 4688999999999
Q ss_pred CCCCCcccH-HHHHHHH----HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMET-FEFLNLM----QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et-~e~L~~L----~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+..-.-+. .+.+..+ ...++| +++|.||+|+......-....+.+.+.+ ..++|++||++| .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (164)
T cd04175 82 ITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGKEQGQNLARQW------GCAFLETSAKAK-----I 149 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEcHHHHHHHHHHh------CCEEEEeeCCCC-----C
Confidence 864322111 1222222 224567 5668999999642111111112222222 357999999977 5
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++.+++..|+..
T Consensus 150 ~v~~~~~~l~~~ 161 (164)
T cd04175 150 NVNEIFYDLVRQ 161 (164)
T ss_pred CHHHHHHHHHHH
Confidence 777777666543
No 145
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.42 E-value=3.4e-12 Score=120.82 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=91.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcccccc---ccEEEE--ecCceeEEEEcCCCC--chhHHHH-hhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVR---GPITIV--SGKQRRLQFVECPND--INGMIDC-AKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~---G~iti~--~~~~~rl~fIDtPGd--l~smld~-ak~ADlVLLV 145 (519)
+..|+++|++|||||||+++|+.........+.. ..+++. .+....+.++||||. +..++.. ++.||++|+|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 5789999999999999999998753211111110 111121 124568999999996 5555554 6789999999
Q ss_pred EeCCCCCccc-----HHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCceEEEEecccCCc
Q 010060 146 IDGSYGFEME-----TFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHGK 218 (519)
Q Consensus 146 VDas~g~e~e-----t~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~~ 218 (519)
+|++..-..+ ..+++......++|. ++|+||+|+.... ......+.+. ..+.. ...+++++||+++
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~NK~D~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~SA~~~-- 155 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPV-LVLANKQDLPNAL-SVSEVEKLLA---LHELSASTPWHVQPACAIIG-- 155 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcE-EEEEECcCccccC-CHHHHHHHhC---ccccCCCCceEEEEeecccC--
Confidence 9997642111 113334334457784 5689999986421 1112211111 01111 2356899999977
Q ss_pred CChhHHHHHHHHHHhhc
Q 010060 219 YSKREIRNLARFISVMK 235 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~ 235 (519)
.++..++..|....
T Consensus 156 ---~gi~~l~~~l~~~l 169 (183)
T cd04152 156 ---EGLQEGLEKLYEMI 169 (183)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 56766666555443
No 146
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.42 E-value=6.1e-12 Score=116.54 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=89.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEE---EecCceeEEEEcCCCCch--h-HHHHhhccCEEEEEEeCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI---VSGKQRRLQFVECPNDIN--G-MIDCAKIADLALLLIDGS 149 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti---~~~~~~rl~fIDtPGdl~--s-mld~ak~ADlVLLVVDas 149 (519)
.|+|+|.+|||||||+++|+...-..........+++ +......+.+|||||... . +...++.||+++||+|++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD 81 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC
Confidence 6899999999999999999886321111111122232 123567899999999632 2 445678999999999997
Q ss_pred CCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHH--HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 150 YGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKK--LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 150 ~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~--l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
.+..-+.. .++..++. .++| +++|+||+|+...... +.+....+...+ ....+++.+||+++ .+
T Consensus 82 ~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~-----~~ 151 (166)
T cd01893 82 RPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQAGLEEEMLPIMNEF----REIETCVECSAKTL-----IN 151 (166)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchhHHHHHHHHHHHHH----hcccEEEEeccccc-----cC
Confidence 64333321 23333432 3566 5568999999753221 112222222222 12247999999977 55
Q ss_pred HHHHHHHHHh
Q 010060 224 IRNLARFISV 233 (519)
Q Consensus 224 i~~LlR~I~~ 233 (519)
+..+...+..
T Consensus 152 v~~lf~~~~~ 161 (166)
T cd01893 152 VSEVFYYAQK 161 (166)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 147
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.42 E-value=3e-12 Score=117.99 Aligned_cols=143 Identities=22% Similarity=0.314 Sum_probs=85.1
Q ss_pred EECCCCCChHHHHHHHHhcccc--C-ccccccccEEEEecC-ceeEEEEcCCCCch----------hHHHHhhccCEEEE
Q 010060 79 VQGPPQVGKSLLIKSLIKHYTK--H-NVPEVRGPITIVSGK-QRRLQFVECPNDIN----------GMIDCAKIADLALL 144 (519)
Q Consensus 79 VVG~pnvGKSTLIn~Ll~~~Tr--~-~v~~~~G~iti~~~~-~~rl~fIDtPGdl~----------smld~ak~ADlVLL 144 (519)
++|++|||||||+|+|++.... . ...+........... ...+.|+||||... .++..++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999987421 0 000000001122234 67899999999421 34567788999999
Q ss_pred EEeCCCCC-----c-ccHH-HHHHHHHh----------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCce
Q 010060 145 LIDGSYGF-----E-METF-EFLNLMQN----------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAK 207 (519)
Q Consensus 145 VVDas~g~-----e-~et~-e~L~~L~~----------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~k 207 (519)
|+|++... . .... .++..+.. .+.| +++|+||+|+..... ..... ... .......+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~~~--~~~---~~~~~~~~ 153 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEE-LEEEL--VRE---LALEEGAE 153 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhH-HHHHH--HHH---HhcCCCCC
Confidence 99997652 1 1111 12222211 3567 456899999975332 22211 111 11234567
Q ss_pred EEEEecccCCcCChhHHHHHHHHHHh
Q 010060 208 LFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 208 Vf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+|++||+++ .++..+...++.
T Consensus 154 ~~~~Sa~~~-----~gl~~l~~~l~~ 174 (176)
T cd01881 154 VVPISAKTE-----EGLDELIRAIYE 174 (176)
T ss_pred EEEEehhhh-----cCHHHHHHHHHh
Confidence 999999866 677777766643
No 148
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.42 E-value=2.2e-12 Score=119.40 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=91.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
.....|+|+|++|+|||||+++|.+........ ..| .+..+...+..+.++|+||. +..++ ..++.+|++++|+|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~-t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITP-TQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCC-CCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 446889999999999999999999863211111 112 11122334678999999996 33333 45688999999999
Q ss_pred CCCCC--cccHHHHHHHH---HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGF--EMETFEFLNLM---QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~--e~et~e~L~~L---~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++... ......+...+ ...++| +++|+||+|+.... ...++.+.+. +........+++++||++| .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~-~~~~i~~~l~--~~~~~~~~~~~~~~Sa~~~-----~ 161 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAA-PAEEIAEALN--LHDLRDRTWHIQACSAKTG-----E 161 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCC-CHHHHHHHcC--CcccCCCeEEEEEeECCCC-----C
Confidence 97532 11111222222 234677 55689999987532 2233333221 1101112236789999977 5
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..+..+|+.
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 77777777653
No 149
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.42 E-value=2.5e-12 Score=124.13 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=88.1
Q ss_pred EEEEECCCCCChHHHHHHHHhcc-ccCccccccccE---EE-EecCceeEEEEcCCCCc------h-h----HHHHhhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI---TI-VSGKQRRLQFVECPNDI------N-G----MIDCAKIA 139 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i---ti-~~~~~~rl~fIDtPGdl------~-s----mld~ak~A 139 (519)
.|+|+|.+|||||||++++++.. .........-.+ ++ +.+....+.||||||.- . . ....++.|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 68999999999999999999752 111111110001 11 22334678899999831 1 1 12346889
Q ss_pred CEEEEEEeCCCCCcccHH-HHHHHHH------hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 140 DLALLLIDGSYGFEMETF-EFLNLMQ------NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~-e~L~~L~------~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
|++|||+|++.+...+.. .++..+. ..++| +|+|.||+|+........+..+.+.... ...++|++|
T Consensus 82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~e~S 155 (198)
T cd04142 82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAPRHVLSVLVRKS-----WKCGYLECS 155 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccccccccccHHHHHHHHHHh-----cCCcEEEec
Confidence 999999999864322211 1222221 24567 5568999999642111111111221111 256899999
Q ss_pred cccCCcCChhHHHHHHHHHHhhcC
Q 010060 213 GLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
|++| .++..+...+.....
T Consensus 156 ak~g-----~~v~~lf~~i~~~~~ 174 (198)
T cd04142 156 AKYN-----WHILLLFKELLISAT 174 (198)
T ss_pred CCCC-----CCHHHHHHHHHHHhh
Confidence 9987 578888877665544
No 150
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.42 E-value=2.8e-12 Score=117.98 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=86.4
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
.|+|+|++|||||||+++|+............+ .+ .+ ..+....+.++||||. +..+. ..++.||++|+|+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 81 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 81 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 689999999999999999998632111110001 01 11 1223456789999995 33433 45788999999999
Q ss_pred CCCCCcccHH-----HHHHHHHh---cCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 148 GSYGFEMETF-----EFLNLMQN---HGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 148 as~g~e~et~-----e~L~~L~~---~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
++.+...+.. +++..+.. .++|. ++|+||+|+..+.. ........+ ......++|++||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~-- 152 (172)
T cd01862 82 VTNPKSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDLEEKRQVSTKKAQQWC------QSNGNIPYFETSAKEA-- 152 (172)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECcccccccccCHHHHHHHH------HHcCCceEEEEECCCC--
Confidence 9754321111 22222211 15674 56899999973211 112222211 1123478999999987
Q ss_pred CChhHHHHHHHHHHhh
Q 010060 219 YSKREIRNLARFISVM 234 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 153 ---~gv~~l~~~i~~~ 165 (172)
T cd01862 153 ---INVEQAFETIARK 165 (172)
T ss_pred ---CCHHHHHHHHHHH
Confidence 5566666655543
No 151
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.41 E-value=8.4e-12 Score=110.52 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=92.4
Q ss_pred EECCCCCChHHHHHHHHhccccCccccccc----cE--EEEecCceeEEEEcCCCCc----------hhHHHHhhccCEE
Q 010060 79 VQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PI--TIVSGKQRRLQFVECPNDI----------NGMIDCAKIADLA 142 (519)
Q Consensus 79 VVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~i--ti~~~~~~rl~fIDtPGdl----------~smld~ak~ADlV 142 (519)
|+|++|+|||||+++|++..... .....+ .. .........+.|+||||.. ..+...+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999863211 111111 01 1111225689999999931 2344578899999
Q ss_pred EEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 143 LLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 143 LLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++|+|++.+.......++..+...+.|.+ +|+||+|+.... ......+. ...........++|++||.++ .
T Consensus 80 l~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~sa~~~-----~ 150 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDLLPEE-EEEELLEL--RLLILLLLLGLPVIAVSALTG-----E 150 (163)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEccccCChh-hHHHHHHH--HHhhcccccCCceEEEeeecc-----C
Confidence 99999998776655554555556788854 689999998643 22222110 111223456789999999866 4
Q ss_pred HHHHHHHHHH
Q 010060 223 EIRNLARFIS 232 (519)
Q Consensus 223 ei~~LlR~I~ 232 (519)
++..+..+|.
T Consensus 151 ~v~~l~~~l~ 160 (163)
T cd00880 151 GIDELREALI 160 (163)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 152
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=4.1e-12 Score=120.95 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=89.6
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc--CccccccccE----EEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGPI----TIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~i----ti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
.|+|+|.+|+|||||+++|+..... ....+..-.+ ..+.+....+.+|||||. +..+ ...++.||++|+|+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 81 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLY 81 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEE
Confidence 6899999999999999999875311 1111110011 111233567899999996 4343 34578899999999
Q ss_pred eCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 147 DGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|++..-..+. ...+..+.. .++| +++|+||+|+...........+.+...+ +.+++.+||++| .
T Consensus 82 D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~~~~~~~l~~~~------~~~~~e~Sa~~~-----~ 149 (191)
T cd04112 82 DITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVKREDGERLAKEY------GVPFMETSAKTG-----L 149 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccCHHHHHHHHHHc------CCeEEEEeCCCC-----C
Confidence 9975422111 123333332 2556 6668999999642211111122222211 458999999977 5
Q ss_pred HHHHHHHHHHhhcC
Q 010060 223 EIRNLARFISVMKF 236 (519)
Q Consensus 223 ei~~LlR~I~~~~~ 236 (519)
++..++..|.....
T Consensus 150 ~v~~l~~~l~~~~~ 163 (191)
T cd04112 150 NVELAFTAVAKELK 163 (191)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777665543
No 153
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.41 E-value=4.7e-12 Score=119.06 Aligned_cols=152 Identities=9% Similarity=0.074 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHHH-hhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMIDC-AKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld~-ak~ADlVLLVVDas~ 150 (519)
...|+++|.+|+|||||+++|.........+++.-.+.........+.|+||||. +..++.. ++.||++|||+|++.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~ 92 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND 92 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC
Confidence 4789999999999999999996432111222221112223345678999999995 4455544 689999999999975
Q ss_pred C--CcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHH
Q 010060 151 G--FEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 151 g--~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
. ++.....+..++.. .++| +++|.||+|+.... ...++...+. +.........++++||++| .++.
T Consensus 93 ~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~--~~~~~~~~~~~~~~Sa~~g-----~gv~ 163 (175)
T smart00177 93 RDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAM-KAAEITEKLG--LHSIRDRNWYIQPTCATSG-----DGLY 163 (175)
T ss_pred HHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCC-CHHHHHHHhC--ccccCCCcEEEEEeeCCCC-----CCHH
Confidence 4 22211122233322 2455 66699999986421 1122222221 0000012345778999987 6777
Q ss_pred HHHHHHHhh
Q 010060 226 NLARFISVM 234 (519)
Q Consensus 226 ~LlR~I~~~ 234 (519)
+++.+|...
T Consensus 164 e~~~~l~~~ 172 (175)
T smart00177 164 EGLTWLSNN 172 (175)
T ss_pred HHHHHHHHH
Confidence 777776543
No 154
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.41 E-value=5.4e-12 Score=112.83 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=87.2
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc-cccc---cccEEEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEV---RGPITIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~---~G~iti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVD 147 (519)
.|+++|++++|||||+++|++...... ..+. .....+. ......+.++||||. +.. ....++.+|++|+|+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d 81 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYD 81 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999998742221 1111 0111111 123467899999995 333 3456788999999999
Q ss_pred CCCCCccc-HHHHHHHHHhc---CCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEME-TFEFLNLMQNH---GLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~e-t~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++..-..+ ...++..+... +.| +++|+||+|+..+.. ......+... . ...+++.+||.++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~-----~--~~~~~~~~sa~~~-----~ 148 (159)
T cd00154 82 ITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQVSTEEAQQFAK-----E--NGLLFFETSAKTG-----E 148 (159)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccccHHHHHHHHH-----H--cCCeEEEEecCCC-----C
Confidence 97532111 12345445443 366 556899999962222 1222222111 1 3578999999876 4
Q ss_pred HHHHHHHHH
Q 010060 223 EIRNLARFI 231 (519)
Q Consensus 223 ei~~LlR~I 231 (519)
++..+...|
T Consensus 149 ~i~~~~~~i 157 (159)
T cd00154 149 NVEELFQSL 157 (159)
T ss_pred CHHHHHHHH
Confidence 666665554
No 155
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.40 E-value=5.9e-12 Score=114.89 Aligned_cols=146 Identities=17% Similarity=0.232 Sum_probs=86.9
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc-ccccccc---EEEE-e--cCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGP---ITIV-S--GKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~---iti~-~--~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
.|+++|.+|+|||||+++|++...... ..++... ..+. . .....+.++||||. +..+ ...++.+|++++|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence 689999999999999999997521111 1111000 0111 1 33467999999995 4443 3467899999999
Q ss_pred EeCCCCCcccHH-HHHHHHH--hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 146 IDGSYGFEMETF-EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
+|++..-..+.. ..+..+. ..++| +|+|+||+|+........+..+.+...+ +.++|++||++| .
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (162)
T cd04106 82 FSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVITNEEAEALAKRL------QLPLFRTSVKDD-----F 149 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCCHHHHHHHHHHc------CCeEEEEECCCC-----C
Confidence 999753221111 2222222 24677 5568999999753211111112222211 458999999876 4
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..+..+|+.
T Consensus 150 ~v~~l~~~l~~ 160 (162)
T cd04106 150 NVTELFEYLAE 160 (162)
T ss_pred CHHHHHHHHHH
Confidence 67777766654
No 156
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.40 E-value=6.6e-12 Score=114.72 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=89.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcccccccc-E---EEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-I---TIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-i---ti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
..|+|+|++|+|||||+++|++...........|. + ++. ......+.+||+||. +..+. ..++.+|++|+|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 57999999999999999999987422211111121 1 111 223457889999995 33333 3567899999999
Q ss_pred eCCCCCcc-cHHHHHHHHHhc---CCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEM-ETFEFLNLMQNH---GLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~-et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++.+-.- ....++..+..+ ++| +++|+||+|+..... ......+.... .+.+++++||++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~----- 148 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQVSTEEAQEYADE-------NGLLFFETSAKTG----- 148 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcCCHHHHHHHHHH-------cCCEEEEEECCCC-----
Confidence 99743211 122445555443 355 556899999873211 11222221111 1367999999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++.+++..|...
T Consensus 149 ~~v~~l~~~l~~~ 161 (163)
T cd01860 149 ENVNELFTEIAKK 161 (163)
T ss_pred CCHHHHHHHHHHH
Confidence 5677777666543
No 157
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.40 E-value=6.2e-12 Score=112.67 Aligned_cols=147 Identities=12% Similarity=0.176 Sum_probs=87.1
Q ss_pred EEEECCCCCChHHHHHHHHhccc-cCccccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEeCCCCC
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLIDGSYGF 152 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVDas~g~ 152 (519)
|+|+|++|||||||+++|.+... .....+..-.+.........+.++|+||. +..+ ...++.+|++++|+|++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 79999999999999999998731 11111111111122233477999999995 4443 34678999999999997532
Q ss_pred ccc--HHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHH
Q 010060 153 EME--TFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNL 227 (519)
Q Consensus 153 e~e--t~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~L 227 (519)
... ...+..++. ..++| +++|+||+|+.... ......+.+. +........++|++|++++ .++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~-----~gi~~l 152 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL-SVDELIEQMN--LKSITDREVSCYSISCKEK-----TNIDIV 152 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc-CHHHHHHHhC--cccccCCceEEEEEEeccC-----CChHHH
Confidence 211 112222222 24677 45689999987532 2222222221 0111123467899999977 566666
Q ss_pred HHHHH
Q 010060 228 ARFIS 232 (519)
Q Consensus 228 lR~I~ 232 (519)
..+|.
T Consensus 153 ~~~l~ 157 (159)
T cd04159 153 LDWLI 157 (159)
T ss_pred HHHHh
Confidence 65554
No 158
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.40 E-value=5.9e-12 Score=115.93 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=87.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc-cCccccccccEE---E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPIT---I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~it---i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
..|+|+|++|||||||+++|+...- .....+....+. + +.+....+.++||||. +..+. ..++.||++|+|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 6899999999999999999997521 111111100011 1 1223457899999995 33433 4568899999999
Q ss_pred eCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++..-.-.. .+++..+.. .++| +++|.||+|+...... ..+. ..+.+. .+.+++++||++|
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~-~~~~~~------~~~~~~~~Sa~~~----- 149 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVDYSEA-QEFADE------LGIPFLETSAKNA----- 149 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCCHHHH-HHHHHH------cCCeEEEEECCCC-----
Confidence 9975321111 133333332 3566 5568999998643211 1111 112111 2468999999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|+..
T Consensus 150 ~~v~~~~~~i~~~ 162 (166)
T cd01869 150 TNVEQAFMTMARE 162 (166)
T ss_pred cCHHHHHHHHHHH
Confidence 5677777666543
No 159
>PTZ00369 Ras-like protein; Provisional
Probab=99.40 E-value=4.6e-12 Score=120.38 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=88.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPND--INGMID-CAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLV 145 (519)
+...|+|+|.+|||||||+++++...-... ..+....+. + +......+.+|||||. +..++. .++.+|++|+|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 347899999999999999999997531111 111111111 1 2233456889999994 445443 56889999999
Q ss_pred EeCCCCCcccHH-----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++..-.-+.. ++++.....++| +++|.||+|+......-......+...+ +.++|.+||++|
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~~~~~~~~~~~~------~~~~~e~Sak~~---- 152 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVSTGEGQELAKSF------GIPFLETSAKQR---- 152 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCHHHHHHHHHHh------CCEEEEeeCCCC----
Confidence 999754321111 222222223566 5568999998642111111111111111 358999999977
Q ss_pred hhHHHHHHHHHHhhc
Q 010060 221 KREIRNLARFISVMK 235 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~ 235 (519)
.++.+++..|+...
T Consensus 153 -~gi~~~~~~l~~~l 166 (189)
T PTZ00369 153 -VNVDEAFYELVREI 166 (189)
T ss_pred -CCHHHHHHHHHHHH
Confidence 56666666665443
No 160
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.39 E-value=9.3e-12 Score=115.03 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE-E--EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT-I--VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it-i--~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
..|+++|.+|||||||++++++..-... .......+. . .......+.++||||. +..+. .....||++|+|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 5799999999999999999987531111 111111111 1 1233467889999995 33333 34678999999999
Q ss_pred CCCCCcccH-HHHHHHHHh------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 148 GSYGFEMET-FEFLNLMQN------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
.+..-..+. ..++..++. .++| +++|.||+|+.............+.. . ...++|.+||++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~----~--~~~~~~e~SA~~g---- 150 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVSSNEGAACAT----E--WNCAFMETSAKTN---- 150 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeecHHHHHHHHH----H--hCCcEEEeecCCC----
Confidence 975433221 123333322 3567 55689999996422111111111111 1 2457899999977
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 151 -~~v~~~f~~l~~ 162 (165)
T cd04140 151 -HNVQELFQELLN 162 (165)
T ss_pred -CCHHHHHHHHHh
Confidence 577777766653
No 161
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.39 E-value=7.7e-12 Score=114.41 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=88.9
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccc----cEEEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVD 147 (519)
.|+|+|++|||||||+++|++...........+ ...+. .+....+.++||||. +..+ ...++.+|++|+|+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEE
Confidence 689999999999999999997632111110001 01111 233467899999995 3343 345789999999999
Q ss_pred CCCCCcccH-HHHHHHHH---hcCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMET-FEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++.+..-+. ..++..++ ..++| +++|.||+|+...... ........ .. .+.+++.+||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~-~~------~~~~~~~~Sa~~~-----~ 148 (161)
T cd04113 82 ITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREVTFLEASRFA-QE------NGLLFLETSALTG-----E 148 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccCCHHHHHHHH-HH------cCCEEEEEECCCC-----C
Confidence 986433222 13333333 24666 6668999999742211 11222211 11 1368999999976 6
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..++..++.
T Consensus 149 ~i~~~~~~~~~ 159 (161)
T cd04113 149 NVEEAFLKCAR 159 (161)
T ss_pred CHHHHHHHHHH
Confidence 77777776654
No 162
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.39 E-value=7.2e-12 Score=115.73 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=87.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccc-cccccE---EE-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EVRGPI---TI-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~~G~i---ti-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
..|+++|++|||||||+++|+...-..... ++.-.+ .+ ..+....+.++||||. +..+ ...++.||++|||+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 579999999999999999998762111110 110011 11 1223457899999996 3343 34578999999999
Q ss_pred eCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++....-+.. +++..+.. .+.| +++|.||+|+...... ..+..+ +... ...++|.+||++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~e~Sa~~~----- 149 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVTYEEAKQ-FADE------NGLLFLECSAKTG----- 149 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcCHHHHHH-HHHH------cCCEEEEEECCCC-----
Confidence 99854221111 33333322 2344 6678999999653211 112222 1111 2468999999987
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++.++...++..
T Consensus 150 ~~i~e~f~~l~~~ 162 (166)
T cd04122 150 ENVEDAFLETAKK 162 (166)
T ss_pred CCHHHHHHHHHHH
Confidence 5666666555543
No 163
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=7.4e-12 Score=115.24 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=89.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EE-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TI-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
-..|+++|++|||||||+++|+....... ...+.-.+ ++ ..+....+.|+||||. +..+ ...++.+|++|+|
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT 86 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37899999999999999999985421111 00000000 01 1223456889999995 4443 4567899999999
Q ss_pred EeCCCCCcccHH-HHH---HHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEMETF-EFL---NLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~et~-e~L---~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+|++.+...+.. ..+ ..+...++|. ++|+||+|+...........+.+... ...+++.+||++|
T Consensus 87 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~-i~v~NK~D~~~~~~i~~~~~~~~~~~------~~~~~~~~Sa~~~----- 154 (169)
T cd04114 87 YDITCEESFRCLPEWLREIEQYANNKVIT-ILVGNKIDLAERREVSQQRAEEFSDA------QDMYYLETSAKES----- 154 (169)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECcccccccccCHHHHHHHHHH------cCCeEEEeeCCCC-----
Confidence 999754222111 222 2222346675 45899999874322122222333221 2367999999977
Q ss_pred hHHHHHHHHHHh
Q 010060 222 REIRNLARFISV 233 (519)
Q Consensus 222 ~ei~~LlR~I~~ 233 (519)
.++..++..|+.
T Consensus 155 ~gv~~l~~~i~~ 166 (169)
T cd04114 155 DNVEKLFLDLAC 166 (169)
T ss_pred CCHHHHHHHHHH
Confidence 567777776664
No 164
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.38 E-value=7.2e-12 Score=113.96 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=86.7
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcc-ccccccE---EEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPI---TIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~i---ti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDa 148 (519)
.|+++|++|+|||||+++|+........ ......+ .........+.++|+||. +..+. ..++.+|.+++|+|.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSI 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEEC
Confidence 6899999999999999999975321111 1111111 112234567999999995 43433 467889999999998
Q ss_pred CCCCc-----ccHHHHHHHHHhcCCCeEEEEEEccCCCCCH-HHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 149 SYGFE-----METFEFLNLMQNHGLPRVMGVLTHLDKFKDV-KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 149 s~g~e-----~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~-k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
+.+-. .+...++......++| +++|+||+|+.... ........ +.+.+ +.++|++||+++ .
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~~~~~~~-~~~~~------~~~~~~~Sa~~~-----~ 148 (164)
T cd04139 82 TDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVSSEEAAN-LARQW------GVPYVETSAKTR-----Q 148 (164)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccCHHHHHH-HHHHh------CCeEEEeeCCCC-----C
Confidence 74321 1111222221124677 55689999997521 11111121 21111 358999999977 6
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++.++...++.
T Consensus 149 gi~~l~~~l~~ 159 (164)
T cd04139 149 NVEKAFYDLVR 159 (164)
T ss_pred CHHHHHHHHHH
Confidence 77777766654
No 165
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.38 E-value=1.3e-11 Score=140.53 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=82.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc--------------ccCccccccccEEE----------EecCceeEEEEcCCCC-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY--------------TKHNVPEVRGPITI----------VSGKQRRLQFVECPND- 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr~~v~~~~G~iti----------~~~~~~rl~fIDtPGd- 128 (519)
-++|+|+|+.++|||||+++|+..+ +.......+| +|+ ..+.+.++.||||||.
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg-~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERG-ITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhc-chhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4799999999999999999998631 0000000011 121 2345678999999996
Q ss_pred -ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 129 -IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 129 -l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
+. .+..++..||++|||+|+..|+..++..++..+...++|.+ +|+||+|+..
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhccc
Confidence 44 37788999999999999999999999999988888899976 6899999863
No 166
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.38 E-value=9.9e-12 Score=115.07 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=88.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
...|+++|++|+|||||++++++..-... .......+ .+. .+....+.++||||. +..+. ..++.||++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 47899999999999999999997631111 11111111 111 223457899999995 33333 457899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.+..-+. ...+..+.. .++| +++|.||+|+...... ..+..... .. ...+++.+||.+|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~-~~------~~~~~~~~Sa~~~---- 150 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVVSKEEGEALA-DE------YGIKFLETSAKAN---- 150 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCHHHHHHHH-HH------cCCEEEEEeCCCC----
Confidence 99975432111 123333332 3566 4568999999742211 11222211 11 1357899999976
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++..++..|+..
T Consensus 151 -~~v~~~~~~i~~~ 163 (167)
T cd01867 151 -INVEEAFFTLAKD 163 (167)
T ss_pred -CCHHHHHHHHHHH
Confidence 5666666655543
No 167
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.38 E-value=9.4e-12 Score=114.00 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=87.6
Q ss_pred EEEEECCCCCChHHHHHHHHhc---cccCcccccccc------EEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH---YTKHNVPEVRGP------ITIVSGKQRRLQFVECPND--INGMI-DCAKIADLAL 143 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~---~Tr~~v~~~~G~------iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVL 143 (519)
.|+|+|.+++|||||+++|... +......+. |. +.+..+....+.++||||. +..++ ..+..+|++|
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTT-GCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCce-EEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 6899999999999999999863 211111111 10 1111235578999999995 33343 4567899999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|+|.+.....+. ..++..+.. .+.| +++|+||+|+......-....+.+... .+.++|++||.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~---- 149 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTDAQAQAFAQA------NQLKFFKTSALRG---- 149 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCHHHHHHHHHH------cCCeEEEEeCCCC----
Confidence 9999975422111 133343333 3566 556899999964321111111222221 2467899999977
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++..++..|..+
T Consensus 150 -~gi~~l~~~l~~~ 162 (164)
T cd04101 150 -VGYEEPFESLARA 162 (164)
T ss_pred -CChHHHHHHHHHH
Confidence 5677777666543
No 168
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.38 E-value=9.8e-12 Score=114.17 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=87.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc----cEEEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
..|+|+|.+|||||||+++|++...........+ ..++. .+....+.++|+||. +..+.. .++.||.+|+|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 5799999999999999999997631111100011 11111 122357899999995 334433 468899999999
Q ss_pred eCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 147 DGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|++....-+.. +.+..+.. .++| +++|.||+|+........+....+.. . .+.+++++||++| .
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~~~~~~~~~~~----~--~~~~~~~~Sa~~~-----~ 151 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPTEEAKAFAE----K--NGLSFIETSALDG-----T 151 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccCCHHHHHHHHH----H--cCCEEEEEECCCC-----C
Confidence 99743221111 23333332 2455 66789999987432111111111111 1 2467999999977 5
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..+...|...
T Consensus 152 ~v~~l~~~l~~~ 163 (165)
T cd01868 152 NVEEAFKQLLTE 163 (165)
T ss_pred CHHHHHHHHHHH
Confidence 677777666543
No 169
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.38 E-value=9.3e-12 Score=116.13 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=87.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-ccccc-----ccEEEEe---------cCceeEEEEcCCCC--chhHH-HHh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVR-----GPITIVS---------GKQRRLQFVECPND--INGMI-DCA 136 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~-----G~iti~~---------~~~~rl~fIDtPGd--l~sml-d~a 136 (519)
+.|+++|.+|||||||+++|+....... ..++. ..+.... .....+.||||||. +..+. ..+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF 84 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence 6899999999999999999987521111 11110 0011111 23467899999995 33433 356
Q ss_pred hccCEEEEEEeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 137 KIADLALLLIDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
+.||++|+|+|++..-.-+. ..++..+.. .+.| +++|.||+|+........+....+...+ +.++|.+
T Consensus 85 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~ 157 (180)
T cd04127 85 RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVSEEQAKALADKY------GIPYFET 157 (180)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccCHHHHHHHHHHc------CCeEEEE
Confidence 88999999999975322111 123333332 2444 6679999999642211111122222222 3579999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||++| .++.++...|...
T Consensus 158 Sak~~-----~~v~~l~~~l~~~ 175 (180)
T cd04127 158 SAATG-----TNVEKAVERLLDL 175 (180)
T ss_pred eCCCC-----CCHHHHHHHHHHH
Confidence 99977 5666666665543
No 170
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.37 E-value=1.2e-11 Score=113.28 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=87.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcc-ccccccE--EEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPI--TIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+|+|.+|+|||||+++++........ .+..... ++. .+....+.|+||||. +..++. .+..||++|+|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d 81 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence 47999999999999999998876322111 1111111 111 223456889999994 555554 4688999999999
Q ss_pred CCCCCccc-HHHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEME-TFEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~e-t~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+..-.-+ ..+++..+.. .++| +++|.||+|+.............+...+ +.++|++||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (163)
T cd04176 82 LVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSSAEGRALAEEW------GCPFMETSAKSK-----T 149 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCHHHHHHHHHHh------CCEEEEecCCCC-----C
Confidence 97532111 1122222322 4677 5568999998642211111122222211 358899999976 5
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..+...++.
T Consensus 150 ~v~~l~~~l~~ 160 (163)
T cd04176 150 MVNELFAEIVR 160 (163)
T ss_pred CHHHHHHHHHH
Confidence 67777666543
No 171
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.37 E-value=1.1e-11 Score=114.93 Aligned_cols=148 Identities=16% Similarity=0.235 Sum_probs=87.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcc-ccccccEE--E-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPIT--I-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~it--i-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+++|.+|+|||||++++++....... .+....+. + +......+.+|||||. +..+.+ .++.+|.+|||+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 46999999999999999999976321111 11111111 1 1233467889999994 555554 4578999999999
Q ss_pred CCCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+..-.-+. .++.......++|. |+|.||+|+........+....+... +...++|++||+++ .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~SA~~~-----~ 150 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKADLEDDRQVSREDGVSLSQQ-----WGNVPFYETSARKR-----T 150 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCE-EEEEEChhccccCccCHHHHHHHHHH-----cCCceEEEeeCCCC-----C
Confidence 875321111 12222222346774 45899999974321111111122221 23468999999977 4
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..+...++.
T Consensus 151 ~i~~~f~~i~~ 161 (168)
T cd04177 151 NVDEVFIDLVR 161 (168)
T ss_pred CHHHHHHHHHH
Confidence 55555555543
No 172
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.37 E-value=1.1e-11 Score=113.20 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=86.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-cEE---E-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PIT---I-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~it---i-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
..|+|+|++|+|||||+++|++...........+ .+. + .......+.|+||||. +..+ ...++.+|++|+|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 3689999999999999999997632111111111 111 1 1233467899999995 3333 23567899999999
Q ss_pred eCCCCCcccHH-HHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMETF-EFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++..-..+.. .++..+.. .+.| +++|.||+|+........+..... . ....++|++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~~~~~~~~-~------~~~~~~~~~Sa~~~----- 147 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTREEGLKFA-R------KHNMLFIETSAKTR----- 147 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCHHHHHHHH-H------HcCCEEEEEecCCC-----
Confidence 99754322211 23333332 3566 556899999973221112222111 1 12567999999977
Q ss_pred hHHHHHHHHHH
Q 010060 222 REIRNLARFIS 232 (519)
Q Consensus 222 ~ei~~LlR~I~ 232 (519)
.++..++..+.
T Consensus 148 ~gi~~~~~~~~ 158 (161)
T cd01863 148 DGVQQAFEELV 158 (161)
T ss_pred CCHHHHHHHHH
Confidence 56666665544
No 173
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.36 E-value=1.2e-11 Score=120.26 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=88.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc-ccccc-cc--EEEE--ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVR-GP--ITIV--SGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~-G~--iti~--~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
.|+|+|.+|||||||+++|++..-... ..+.. .. ..+. ......+.++||||. +..+++ .+..||++|||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~ 81 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVY 81 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEE
Confidence 689999999999999999997521111 11100 00 0111 123567899999996 333443 468999999999
Q ss_pred eCCCCCcccHH-HHHHHHHhc-----CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 147 DGSYGFEMETF-EFLNLMQNH-----GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~~~-----GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
|++..-..+.. ..+..+... .-+.+++|.||+|+........+....+.+. .+.++|.+||++|
T Consensus 82 D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~------~~~~~~~iSAktg---- 151 (215)
T cd04109 82 DVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA------NGMESCLVSAKTG---- 151 (215)
T ss_pred ECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH------cCCEEEEEECCCC----
Confidence 99754221111 233333321 1234777999999974221111111222221 1367899999987
Q ss_pred hhHHHHHHHHHHhhcC
Q 010060 221 KREIRNLARFISVMKF 236 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 152 -~gv~~lf~~l~~~l~ 166 (215)
T cd04109 152 -DRVNLLFQQLAAELL 166 (215)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 567777766665433
No 174
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=5.6e-12 Score=128.96 Aligned_cols=121 Identities=22% Similarity=0.388 Sum_probs=79.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC---ccccccc-cEEEEecCceeEEEEcCCCCch------------hHHH
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH---NVPEVRG-PITIVSGKQRRLQFVECPNDIN------------GMID 134 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---~v~~~~G-~iti~~~~~~rl~fIDtPGdl~------------smld 134 (519)
++..+.|+|.|+||||||||+++|++....- +.++ .| .+-.+.....++++|||||-|. +++.
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 4556799999999999999999999872110 0000 11 0113455677999999999422 3444
Q ss_pred HhhccCEEEEEEeCC--CCCcccHH-HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHH
Q 010060 135 CAKIADLALLLIDGS--YGFEMETF-EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQR 193 (519)
Q Consensus 135 ~ak~ADlVLLVVDas--~g~e~et~-e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~ 193 (519)
....+++|||++|++ +|+..+.+ .++.-++..=.+.+++|+||+|.... +.+.+....
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~-e~~~~~~~~ 304 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE-EKLEEIEAS 304 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch-hHHHHHHHH
Confidence 557899999999997 45555444 45555554322457779999999843 344444433
No 175
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.36 E-value=5.9e-12 Score=111.57 Aligned_cols=144 Identities=17% Similarity=0.277 Sum_probs=80.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccc-cc-cccEE-EEecCc--eeEEEEcCCCC--chhHHH--------Hhhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EV-RGPIT-IVSGKQ--RRLQFVECPND--INGMID--------CAKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~-~G~it-i~~~~~--~rl~fIDtPGd--l~smld--------~ak~ 138 (519)
++.|+++|++|+|||||+++|++........ .. ..... .+.... ..+.++||||. +..++. .+..
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3689999999999999999999875211110 00 00000 112223 67899999994 333222 2334
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
+|++++|+++..+...+...++..+.. +.| +++|+||+|+.... ......+.+. .....+++++||..+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-~~~~~~~~~~------~~~~~~~~~~sa~~~-- 149 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-LKTHVAFLFA------KLNGEPIIPLSAETG-- 149 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-hhHHHHHHHh------hccCCceEEeecCCC--
Confidence 455555555444333333344444433 777 45689999997532 1122222211 123456999999876
Q ss_pred CChhHHHHHHHHH
Q 010060 219 YSKREIRNLARFI 231 (519)
Q Consensus 219 Y~~~ei~~LlR~I 231 (519)
.++..+...|
T Consensus 150 ---~gv~~~~~~l 159 (161)
T TIGR00231 150 ---KNIDSAFKIV 159 (161)
T ss_pred ---CCHHHHHHHh
Confidence 4555555443
No 176
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.36 E-value=1.3e-11 Score=113.49 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=88.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC-ccccc---cccEEEEecCceeEEEEcCCCCch--hHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEV---RGPITIVSGKQRRLQFVECPNDIN--GMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~---~G~iti~~~~~~rl~fIDtPGdl~--sml-d~ak~ADlVLLVVD 147 (519)
+.|+++|.+|+|||||+++|++..-.. ..... ........+....+.++||||... ... ..++.||++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 368999999999999999999864210 11100 011111223456799999999532 322 23578999999999
Q ss_pred CCCCCccc--HHHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHH-------H-HHHHHHhhhhhccCCceEEEEeccc
Q 010060 148 GSYGFEME--TFEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRK-------T-KQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 148 as~g~e~e--t~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~-------~-kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
++...... ..+++..+... +.| +++|+||+|+......... + ...... + .......++|.+||++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK-L-AKEIGAIGYMECSALT 157 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHH-H-HHHhCCeEEEEeecCC
Confidence 97532221 22345544432 466 5568999999764322110 0 111111 1 1223344899999997
Q ss_pred CCcCChhHHHHHHHHHH
Q 010060 216 HGKYSKREIRNLARFIS 232 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~ 232 (519)
| .++..+...|.
T Consensus 158 ~-----~gi~~l~~~i~ 169 (171)
T cd00157 158 Q-----EGVKEVFEEAI 169 (171)
T ss_pred C-----CCHHHHHHHHh
Confidence 7 56777766554
No 177
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.36 E-value=1.3e-11 Score=113.77 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=86.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccc-cCccccc--cccEEE-EecCceeEEEEcCCCCc---h-hHHHHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEV--RGPITI-VSGKQRRLQFVECPNDI---N-GMIDCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~--~G~iti-~~~~~~rl~fIDtPGdl---~-smld~ak~ADlVLLVVD 147 (519)
.|+|+|++|||||||+++++.... ....... .....+ +.+....+.+|||||.. . .....++.||++|+|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 389999999999999999875421 1000000 011111 23334578899999953 2 24567889999999999
Q ss_pred CCCCCcccH-HHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 148 GSYGFEMET-FEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
++....-+. ..++..+.. .++| +++|.||+|+........+....+...+ +.++|.+||+++ .
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~Sa~~~----~ 149 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVSTEEGEKLASEL------GCLFFEVSAAED----Y 149 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccCHHHHHHHHHHc------CCEEEEeCCCCC----c
Confidence 986422121 122333322 3667 5568999998532111111111121111 368999999876 1
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...++..
T Consensus 150 ~~v~~~f~~l~~~ 162 (165)
T cd04146 150 DGVHSVFHELCRE 162 (165)
T ss_pred hhHHHHHHHHHHH
Confidence 3677777666543
No 178
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.35 E-value=1.4e-11 Score=132.90 Aligned_cols=129 Identities=20% Similarity=0.269 Sum_probs=85.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEE-----EEecCceeEEEEcCCCC--ch---------hHHHH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT-----IVSGKQRRLQFVECPND--IN---------GMIDC 135 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it-----i~~~~~~rl~fIDtPGd--l~---------smld~ 135 (519)
..+..|+|+|+||||||||+|+|++.. +..+....|... .+...+..+.++||||. .. .+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~-~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQD-RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 445789999999999999999999863 112222222111 12234567899999994 11 13456
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
++.||++|+|+|++.+...+.. ++..+...+.| +|+|+||+|+... ... .+.+. .+.++|.+||++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~--~~~----~~~~~------~~~~~~~vSak~ 345 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN--SLE----FFVSS------KVLNSSNLSAKQ 345 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc--chh----hhhhh------cCCceEEEEEec
Confidence 7899999999999877655544 55555556777 5568999999743 111 11111 135688999986
No 179
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.35 E-value=1.6e-11 Score=116.86 Aligned_cols=146 Identities=17% Similarity=0.205 Sum_probs=85.7
Q ss_pred EEEECCCCCChHHHHHHHHhcc-ccCccccccccE--EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCC
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGS 149 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas 149 (519)
|+|+|.+|||||||+++|+... ......+....+ ++ ..+....+.||||||. +..+. ..++.||++|||+|.+
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT 81 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECC
Confidence 7899999999999999998642 111111111111 11 1233356899999995 33433 3578999999999997
Q ss_pred CCCcccH-HHHHHHHHh------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 150 YGFEMET-FEFLNLMQN------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 150 ~g~e~et-~e~L~~L~~------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
..-.-+. ..++..+.. .++| +|+|.||+|+.............+...+ +.++|.+||++| .
T Consensus 82 ~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~SAk~~-----~ 149 (190)
T cd04144 82 SRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVSTEEGAALARRL------GCEFIEASAKTN-----V 149 (190)
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccCHHHHHHHHHHh------CCEEEEecCCCC-----C
Confidence 5432111 123333322 3456 5568999999642211111112222211 357999999987 5
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..++..+...
T Consensus 150 ~v~~l~~~l~~~ 161 (190)
T cd04144 150 NVERAFYTLVRA 161 (190)
T ss_pred CHHHHHHHHHHH
Confidence 666777666543
No 180
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.35 E-value=4.8e-12 Score=110.87 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=69.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccc----ccc-EEEEecCceeEEEEcCCCCc------------hhHHHHhhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEV----RGP-ITIVSGKQRRLQFVECPNDI------------NGMIDCAKI 138 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~----~G~-iti~~~~~~rl~fIDtPGdl------------~smld~ak~ 138 (519)
.|+|+|.+|+|||||+|+|++.. ...+... ..+ +..+......+.|+||||-. ..+++.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 48999999999999999999842 1111110 111 11223466788999999931 125566789
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTH 177 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNK 177 (519)
+|++++|+|++.+......++++.|+ .+.| +++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 99999999988755555568888886 6666 5568998
No 181
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=1.8e-11 Score=117.43 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=87.3
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccc---cEEEE--e-cCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG---PITIV--S-GKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G---~iti~--~-~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
.|+|+|.+|||||||+++|+...-........| .+..+ . +....+.||||||. +..+. ..++.||++|||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 81 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVF 81 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEE
Confidence 689999999999999999997531111110001 01111 2 34567899999995 44443 3568999999999
Q ss_pred eCCCCCcccHH-HHHHHHH-------hcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 147 DGSYGFEMETF-EFLNLMQ-------NHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~-------~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|.+....-+.. .++..+. ..++| +|+|.||+|+..... ...+.. .+... ....++|.+||++|
T Consensus 82 D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~-~~~~~-----~~~~~~~e~Sak~~- 153 (201)
T cd04107 82 DVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLAKDGEQMD-QFCKE-----NGFIGWFETSAKEG- 153 (201)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccccCHHHHH-HHHHH-----cCCceEEEEeCCCC-
Confidence 99754221111 1222222 13566 556899999963111 112222 22111 12367999999987
Q ss_pred cCChhHHHHHHHHHHhhcC
Q 010060 218 KYSKREIRNLARFISVMKF 236 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 154 ----~~v~e~f~~l~~~l~ 168 (201)
T cd04107 154 ----INIEEAMRFLVKNIL 168 (201)
T ss_pred ----CCHHHHHHHHHHHHH
Confidence 466666655554433
No 182
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.34 E-value=1.7e-11 Score=111.03 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEEEECCCCCChHHHHHHHHhccccC-ccccccccEE---EE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPIT---IV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~it---i~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
.|+++|++|+|||||+++|+...... ........+. +. ......+.++||||. +..+.. .++.+|++|+|+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence 68999999999999999999863211 1111111111 11 123457899999995 334433 3578999999999
Q ss_pred CCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++.+-..+.. .++..+.. .++| +++|+||+|+...... .....+.. +. .+.++|++|++++ .
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~~~~~~~~~-~~------~~~~~~~~s~~~~-----~ 148 (162)
T cd04123 82 ITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVSKSEAEEYA-KS------VGAKHFETSAKTG-----K 148 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCHHHHHHHH-HH------cCCEEEEEeCCCC-----C
Confidence 9754322221 22222222 2456 5668999998742211 11222211 11 2467899999976 5
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..+...|..
T Consensus 149 gi~~~~~~l~~ 159 (162)
T cd04123 149 GIEELFLSLAK 159 (162)
T ss_pred CHHHHHHHHHH
Confidence 66666655543
No 183
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.34 E-value=1.5e-11 Score=114.98 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=86.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC-cccccccc-EEEEe--cCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGP-ITIVS--GKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~-iti~~--~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
+.|+|+|++|||||||+++|+...-.. ...+.... +.... .....+.++||||. +..+. ..+..+|.+++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 579999999999999999999753111 11111011 11121 23456789999995 33222 35678999999999
Q ss_pred CCCCCcccHH-----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+.....+.. .+++.....++| +|+|+||+|+.............+...+ ..++|++||+++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-----~ 149 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVSTEEGKELAESW------GAAFLESSAREN-----E 149 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCHHHHHHHHHHc------CCeEEEEeCCCC-----C
Confidence 9864332222 222222234667 5568999998642211111112222211 368999999976 4
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..++..|...
T Consensus 150 gv~~l~~~l~~~ 161 (180)
T cd04137 150 NVEEAFELLIEE 161 (180)
T ss_pred CHHHHHHHHHHH
Confidence 666666555443
No 184
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.34 E-value=1.5e-11 Score=116.75 Aligned_cols=151 Identities=8% Similarity=0.069 Sum_probs=91.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~ 150 (519)
...|+++|++|||||||++++.........++..-.+..+......+.++||||. +..++. .+..||++|+|+|++.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~ 96 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND 96 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 4789999999999999999996431111112211112223345678999999996 444444 4789999999999974
Q ss_pred C--CcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCceEEEEecccCCcCChhH
Q 010060 151 G--FEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 151 g--~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~~Y~~~e 223 (519)
. ++....++...+.. ...| +++|.||.|+.... ...++...+. .... ....++.+||++| .+
T Consensus 97 ~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg-----~g 165 (182)
T PTZ00133 97 RERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAM-STTEVTEKLG----LHSVRQRNWYIQGCCATTA-----QG 165 (182)
T ss_pred HHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCC-CHHHHHHHhC----CCcccCCcEEEEeeeCCCC-----CC
Confidence 3 22222234444433 2345 66789999986421 1122222221 1111 1234668899977 67
Q ss_pred HHHHHHHHHhhc
Q 010060 224 IRNLARFISVMK 235 (519)
Q Consensus 224 i~~LlR~I~~~~ 235 (519)
+..+...|....
T Consensus 166 v~e~~~~l~~~i 177 (182)
T PTZ00133 166 LYEGLDWLSANI 177 (182)
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 185
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.34 E-value=3.2e-11 Score=111.51 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC-ccccccccE---EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPI---TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
....|+++|.+|+|||||+++++...... ....+...+ .+ +.+....+.++||||. +..+. ..++.||++|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 34789999999999999999998753211 111110000 11 1234567889999995 33433 35688999999
Q ss_pred EEeCCCCCccc-----HHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 145 LIDGSYGFEME-----TFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 145 VVDas~g~e~e-----t~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|+|.+..-.-+ ..+++..+. ..++| +++|.||+|+.+..-...+..+.++. ....++|++||++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~ 156 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQVSTEEAQAWCRE------NGDYPYFETSAKDA 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccccccCHHHHHHHHHH------CCCCeEEEEECCCC
Confidence 99987542111 112333221 13567 45589999986321112222222211 23457899999977
Q ss_pred CcCChhHHHHHHHHHH
Q 010060 217 GKYSKREIRNLARFIS 232 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~ 232 (519)
.++.++...+.
T Consensus 157 -----~~v~~~~~~~~ 167 (170)
T cd04116 157 -----TNVAAAFEEAV 167 (170)
T ss_pred -----CCHHHHHHHHH
Confidence 56777766554
No 186
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.33 E-value=1.8e-11 Score=113.36 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=86.3
Q ss_pred EEEECCCCCChHHHHHHHHhccccCc-cccccccE--EEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCC
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGS 149 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas 149 (519)
|+|+|.+|||||||+++++...-... .......+ ++. .+....+.++||||. +..+.. ..+.+|++|||+|.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999998531110 01100001 111 223456899999995 333333 467899999999997
Q ss_pred CC--CcccHHHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEEecccC
Q 010060 150 YG--FEMETFEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 150 ~g--~e~et~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
.. ++.....++..+.. .++| +|+|.||+|+........... +... .+ ..-....++|++||+++
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGE-AL-AKRIGAVKYLECSALTQ 157 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHH-HH-HHHcCCcEEEEecCCCC
Confidence 53 21111123444433 3566 567999999975332111111 0000 11 11123347899999977
Q ss_pred CcCChhHHHHHHHHHHhh
Q 010060 217 GKYSKREIRNLARFISVM 234 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...+...
T Consensus 158 -----~~v~~lf~~l~~~ 170 (174)
T smart00174 158 -----EGVREVFEEAIRA 170 (174)
T ss_pred -----CCHHHHHHHHHHH
Confidence 5677777666544
No 187
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=1.9e-11 Score=116.00 Aligned_cols=151 Identities=9% Similarity=0.059 Sum_probs=90.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSYG 151 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~g 151 (519)
..|+++|.+++|||||+++|.........+++.-.++.+......+.++|+||. +..++. .++.||++|||+|++..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~ 97 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH
Confidence 689999999999999999997532111222211112223345678999999996 445544 46899999999999854
Q ss_pred Cc--ccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc-cCCceEEEEecccCCcCChhHHH
Q 010060 152 FE--METFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI-YDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 152 ~e--~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~-~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
-. ....++...+.. .+.| +++|.||+|+.... ...++.+.+. + ... .....++++||++| +++.
T Consensus 98 ~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~l~--l-~~~~~~~~~~~~~Sa~~g-----~gv~ 167 (181)
T PLN00223 98 DRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAM-NAAEITDKLG--L-HSLRQRHWYIQSTCATSG-----EGLY 167 (181)
T ss_pred HHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCC-CHHHHHHHhC--c-cccCCCceEEEeccCCCC-----CCHH
Confidence 22 111123333322 3556 55689999986432 2223322221 0 000 01224667899987 5788
Q ss_pred HHHHHHHhhc
Q 010060 226 NLARFISVMK 235 (519)
Q Consensus 226 ~LlR~I~~~~ 235 (519)
++.+.|+...
T Consensus 168 e~~~~l~~~~ 177 (181)
T PLN00223 168 EGLDWLSNNI 177 (181)
T ss_pred HHHHHHHHHH
Confidence 8887776553
No 188
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.33 E-value=2e-11 Score=114.08 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=90.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc--CccccccccE---EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGPI---TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLAL 143 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVL 143 (519)
+...|+|+|.+|||||||++++++..-. ....+....+ ++ ..+....+.++|++|. +..+. ..+..||++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 3478999999999999999999986321 1111111111 11 1233457888999985 33332 3468999999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHh-cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQN-HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~-~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
||+|++.+-..+. .+++..+.. .++| +++|+||+|+...........+.+.+.+ ....++++||+++
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~----- 151 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRYEVQPDEFCRKL-----GLPPPLHFSSKLG----- 151 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccccccCHHHHHHHc-----CCCCCEEEEeccC-----
Confidence 9999975421111 133333322 2566 5669999998643211111112222222 2335689999977
Q ss_pred hHHHHHHHHHHhhcC
Q 010060 222 REIRNLARFISVMKF 236 (519)
Q Consensus 222 ~ei~~LlR~I~~~~~ 236 (519)
.++..+.+.|.....
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 467777777766543
No 189
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=124.74 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc---cccccccE-EEEecCceeEEEEcCCCCch----------hHHHHhhccC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN---VPEVRGPI-TIVSGKQRRLQFVECPNDIN----------GMIDCAKIAD 140 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---v~~~~G~i-ti~~~~~~rl~fIDtPGdl~----------smld~ak~AD 140 (519)
.-|++||+||+|||||+|+|...-.+-. .++....+ |+.-.+-.++++-|.||-+. .+|..+..|+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 3578899999999999999998732210 11111111 22222334599999998432 4889999999
Q ss_pred EEEEEEeCCCCC--ccc-HHHHHH-HHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 141 LALLLIDGSYGF--EME-TFEFLN-LMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 141 lVLLVVDas~g~--e~e-t~e~L~-~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
+++||||.+.+. +++ .+++|. -|.. ...| .++|+||+|+...++ ...++|.+++ +..+||++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp-~liVaNKiD~~eae~---~~l~~L~~~l-----q~~~V~pv 347 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRP-ALIVANKIDLPEAEK---NLLSSLAKRL-----QNPHVVPV 347 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCc-eEEEEeccCchhHHH---HHHHHHHHHc-----CCCcEEEe
Confidence 999999998662 222 222221 1211 1234 556899999964332 2234454444 45589999
Q ss_pred ecccCCcCChhHHHHHHHHH
Q 010060 212 SGLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I 231 (519)
||+++ +++.+|++.|
T Consensus 348 sA~~~-----egl~~ll~~l 362 (366)
T KOG1489|consen 348 SAKSG-----EGLEELLNGL 362 (366)
T ss_pred eeccc-----cchHHHHHHH
Confidence 99977 4555555444
No 190
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.32 E-value=2.5e-11 Score=115.00 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=87.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccC--ccccccccEE--EE--ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKH--NVPEVRGPIT--IV--SGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~~~~G~it--i~--~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
.|+|+|.+|||||||+++|+...-.. ...++...+. .+ .+....+.||||||. +..+.. ....||++|||+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~ 81 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCY 81 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEE
Confidence 68999999999999999999753111 1111111111 11 223356779999995 334443 356899999999
Q ss_pred eCCCCCcccH-HHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHH-HHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 147 DGSYGFEMET-FEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKT-KQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~-kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|++..-.-+. ..++..++.. ++| +++|.||+|+.........+ ...+.. |... .+.++|++||+++ .
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~-~~~~--~~~~~~~~Sa~~~-----~ 152 (193)
T cd04118 82 DLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQD-FADE--IKAQHFETSSKTG-----Q 152 (193)
T ss_pred ECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHH-HHHH--cCCeEEEEeCCCC-----C
Confidence 9975422111 2344444432 566 66799999986422111111 011111 1111 1467899999977 4
Q ss_pred HHHHHHHHHHhhc
Q 010060 223 EIRNLARFISVMK 235 (519)
Q Consensus 223 ei~~LlR~I~~~~ 235 (519)
++..+...|....
T Consensus 153 gv~~l~~~i~~~~ 165 (193)
T cd04118 153 NVDELFQKVAEDF 165 (193)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665444
No 191
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.32 E-value=3.1e-11 Score=113.24 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=88.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc-CccccccccE--EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
..|+|+|.+|||||||+++++...-. ....+....+ ++ +.+....+.++||||. +..+. ..+..||++|+|+|
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d 82 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYS 82 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEE
Confidence 57999999999999999999865211 1111111111 11 1233457899999995 44544 35688999999999
Q ss_pred CCCCCcccHH-HHHHHHH----hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEMETF-EFLNLMQ----NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~et~-e~L~~L~----~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.+....-+.. +++..+. ..++| +|+|.||+|+......-.+....+.+. .+.++|.+||++| .
T Consensus 83 ~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v~~~~~~~~a~~------~~~~~~e~Sa~~~-----~ 150 (172)
T cd04141 83 VTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQVTTEEGRNLARE------FNCPFFETSAALR-----H 150 (172)
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCccCHHHHHHHHHH------hCCEEEEEecCCC-----C
Confidence 9754332222 2222222 23567 556899999864211101111112111 1468999999987 4
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..+...|+..
T Consensus 151 ~v~~~f~~l~~~ 162 (172)
T cd04141 151 YIDDAFHGLVRE 162 (172)
T ss_pred CHHHHHHHHHHH
Confidence 566666555543
No 192
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.31 E-value=4.2e-11 Score=108.29 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=85.2
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcccc-ccccEE-EEe--cCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPE-VRGPIT-IVS--GKQRRLQFVECPND--INGM-IDCAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~-~~G~it-i~~--~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVDa 148 (519)
.|+|+|++|+|||||+++|++..-...... ....+. ... .....+.++|+||. +..+ ...++.+|++++|+|.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 389999999999999999997631111110 001111 111 22467899999995 3343 3456889999999998
Q ss_pred CCCCccc-HHHHHHHHH-h---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 149 SYGFEME-TFEFLNLMQ-N---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 149 s~g~e~e-t~e~L~~L~-~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
+...... ...++..+. . .+.| +++|+||+|+...... ........+. .+.+++++|++++ .
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~-----~ 147 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQVSKEEGKALAKE-------WGCPFIETSAKDN-----I 147 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccceecHHHHHHHHHH-------cCCcEEEeccCCC-----C
Confidence 7532211 112222222 1 3556 5668999999752211 1122111111 1268999999976 5
Q ss_pred HHHHHHHHHHh
Q 010060 223 EIRNLARFISV 233 (519)
Q Consensus 223 ei~~LlR~I~~ 233 (519)
++..+...|..
T Consensus 148 ~i~~l~~~l~~ 158 (160)
T cd00876 148 NIDEVFKLLVR 158 (160)
T ss_pred CHHHHHHHHHh
Confidence 67777766653
No 193
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.31 E-value=5.3e-11 Score=114.26 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=88.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-ccccccccE---EEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPI---TIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
.+.|+|+|++|||||||+++|++..-.. ...++...+ ++. .+....+.||||||. +..+. ..+..||++|||
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 4789999999999999999998753111 111111111 111 233457899999996 33433 356789999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 146 IDGSYGFEMET-FEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
+|++..-.-+. ...+..+.. ..+| +++|.||+|+.............+... .+.++|.+||++| .
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~-----~ 153 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVETEDAYKFAGQ------MGISLFETSAKEN-----I 153 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccCHHHHHHHHHH------cCCEEEEEECCCC-----c
Confidence 99975422111 123343332 2345 556899999874321111111111111 2468999999977 4
Q ss_pred HHHHHHHHHHhhc
Q 010060 223 EIRNLARFISVMK 235 (519)
Q Consensus 223 ei~~LlR~I~~~~ 235 (519)
++..+...|....
T Consensus 154 gi~~lf~~l~~~~ 166 (199)
T cd04110 154 NVEEMFNCITELV 166 (199)
T ss_pred CHHHHHHHHHHHH
Confidence 6666665555443
No 194
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.31 E-value=3.2e-11 Score=113.56 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc-CccccccccE--EEEe--cCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPI--TIVS--GKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~i--ti~~--~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
+.|+|+|.+|+|||||+++|+...-. .....+...+ .+.. .....+.++||||. +..+.. .++.||++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 36899999999999999999976311 1111110011 1111 33457899999995 444443 468899999999
Q ss_pred eCCCCCcccHH--HHHHHHH--hcCCCeEEEEEEccCCCCCHHH---H-HHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 147 DGSYGFEMETF--EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKK---L-RKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 147 Das~g~e~et~--e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~---l-~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|++.....+.. .++..+. ..++| +|+|.||.|+...... + ......+.. .....++|.+||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~~-- 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLECSAKTM-- 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEccCCCC--
Confidence 99753222211 1233232 23566 5668999998642210 0 111111111 123337899999977
Q ss_pred CChhHHHHHHHHHHhh
Q 010060 219 YSKREIRNLARFISVM 234 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~ 234 (519)
.++.++...+...
T Consensus 153 ---~~v~~~f~~l~~~ 165 (187)
T cd04132 153 ---ENVEEVFDTAIEE 165 (187)
T ss_pred ---CCHHHHHHHHHHH
Confidence 4566666554443
No 195
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.31 E-value=3.9e-11 Score=111.56 Aligned_cols=149 Identities=14% Similarity=0.227 Sum_probs=87.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EE-EecCceeEEEEcCCCC--ch-hHHH-HhhccCEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TI-VSGKQRRLQFVECPND--IN-GMID-CAKIADLALLL 145 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti-~~~~~~rl~fIDtPGd--l~-smld-~ak~ADlVLLV 145 (519)
..|+++|++|+|||||+++++............+ .+ .+ +.+....+.++||||. +. .++. .++.+|++++|
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence 6899999999999999999987532211110001 00 11 1234468999999995 33 2343 46789999999
Q ss_pred EeCCCCCcccHH-HHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMETF-EFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.+-..+.. .++..+.. ..+| +++|.||+|+...........+.+... ...++|.+||+++. .
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~~--~ 153 (170)
T cd04115 83 YDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVPTDLAQRFADA------HSMPLFETSAKDPS--E 153 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCCHHHHHHHHHH------cCCcEEEEeccCCc--C
Confidence 999854332222 33333332 3467 456899999864221111222222211 13678999999742 2
Q ss_pred hhHHHHHHHHHH
Q 010060 221 KREIRNLARFIS 232 (519)
Q Consensus 221 ~~ei~~LlR~I~ 232 (519)
..++..+...++
T Consensus 154 ~~~i~~~f~~l~ 165 (170)
T cd04115 154 NDHVEAIFMTLA 165 (170)
T ss_pred CCCHHHHHHHHH
Confidence 345666665544
No 196
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.31 E-value=3.5e-11 Score=115.29 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=87.7
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccc-cccccE--EE-EecCceeEEEEcCCCCc--hhHHH-HhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EVRGPI--TI-VSGKQRRLQFVECPNDI--NGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~~G~i--ti-~~~~~~rl~fIDtPGdl--~smld-~ak~ADlVLLVVDa 148 (519)
.|+|+|.+|||||||+++|+......... ...... .+ +.+....+.|+|+||.. ..+.. .+..||++|||+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 37999999999999999998763221110 110000 11 12223578999999963 33433 46889999999999
Q ss_pred CCCCcccHH-----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.+...+.. .++......++|. |+|+||+|+......+.. .. ..+.+. ...+.+++.+||++| .+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~~v~~-~~-~~~~~~--~~~~~~~~~~Sa~~g-----~g 150 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPI-VVVGNKADSLEEERQVPA-KD-ALSTVE--LDWNCGFVETSAKDN-----EN 150 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEccccccccccccH-HH-HHHHHH--hhcCCcEEEecCCCC-----CC
Confidence 764322211 2222222246775 558999999753111111 11 111110 112457899999977 67
Q ss_pred HHHHHHHHHhhc
Q 010060 224 IRNLARFISVMK 235 (519)
Q Consensus 224 i~~LlR~I~~~~ 235 (519)
+..+...|....
T Consensus 151 v~~l~~~l~~~~ 162 (198)
T cd04147 151 VLEVFKELLRQA 162 (198)
T ss_pred HHHHHHHHHHHh
Confidence 777777766543
No 197
>PLN03118 Rab family protein; Provisional
Probab=99.30 E-value=5.3e-11 Score=115.16 Aligned_cols=151 Identities=16% Similarity=0.203 Sum_probs=90.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
..+.|+|+|++|||||||+++|+...... .....| .+ ++. .....++.|+||||. +..+. ..+..+|++||
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999764211 111111 11 111 233467899999995 44444 35688999999
Q ss_pred EEeCCCCCcccHH-H-HHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 145 LIDGSYGFEMETF-E-FLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 145 VVDas~g~e~et~-e-~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|+|++.....+.. + +...+.. .++| +++|.||+|+......-.+....+.. . .+..+|++||+++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~~~~~~~~~~----~--~~~~~~e~SAk~~-- 162 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVSREEGMALAK----E--HGCLFLECSAKTR-- 162 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccCHHHHHHHHH----H--cCCEEEEEeCCCC--
Confidence 9999754222221 1 1122221 3456 45689999997422111111111111 1 2457899999977
Q ss_pred CChhHHHHHHHHHHhhcC
Q 010060 219 YSKREIRNLARFISVMKF 236 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..++..|....+
T Consensus 163 ---~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 163 ---ENVEQCFEELALKIM 177 (211)
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 567777766665543
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.30 E-value=2.4e-11 Score=138.92 Aligned_cols=141 Identities=23% Similarity=0.303 Sum_probs=93.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEE------EecCceeEEEEcCCCCc--hh-----HH------HH
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI------VSGKQRRLQFVECPNDI--NG-----MI------DC 135 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti------~~~~~~rl~fIDtPGdl--~s-----ml------d~ 135 (519)
.+|+++|+||||||||+|+|++... .+....| +|+ +......+.++||||.. .. .+ +.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pG-vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAG-VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCC-ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 5899999999999999999998642 2222222 222 23456789999999952 11 11 12
Q ss_pred --hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 136 --AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 136 --ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
...+|++|+|+|++.. +. ...+...+...|+|.+ +|+||+|+.+.. ......+.+.+.+ +.+++++||
T Consensus 81 l~~~~aD~vI~VvDat~l-er-~l~l~~ql~e~giPvI-vVlNK~Dl~~~~-~i~id~~~L~~~L------G~pVvpiSA 150 (772)
T PRK09554 81 ILSGDADLLINVVDASNL-ER-NLYLTLQLLELGIPCI-VALNMLDIAEKQ-NIRIDIDALSARL------GCPVIPLVS 150 (772)
T ss_pred HhccCCCEEEEEecCCcc-hh-hHHHHHHHHHcCCCEE-EEEEchhhhhcc-CcHHHHHHHHHHh------CCCEEEEEe
Confidence 2379999999999863 22 2345556667899955 589999987432 2222334454444 578999999
Q ss_pred ccCCcCChhHHHHHHHHHHh
Q 010060 214 LIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~ 233 (519)
.++ .++..+...+..
T Consensus 151 ~~g-----~GIdeL~~~I~~ 165 (772)
T PRK09554 151 TRG-----RGIEALKLAIDR 165 (772)
T ss_pred ecC-----CCHHHHHHHHHH
Confidence 976 456666666554
No 199
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.30 E-value=4.4e-11 Score=117.27 Aligned_cols=148 Identities=18% Similarity=0.155 Sum_probs=86.9
Q ss_pred EEEEECCCCCChHHHHHHHHhc-cccCccccccc----cEEEE-ecCceeEEEEcCCCCchhHHH-Hhh-ccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRG----PITIV-SGKQRRLQFVECPNDINGMID-CAK-IADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G----~iti~-~~~~~rl~fIDtPGdl~smld-~ak-~ADlVLLVVD 147 (519)
.|+|+|.+|||||||+++++.. +.........+ ..++. ......+.||||||.-..+.. ... .||++|||+|
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d 81 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYS 81 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEE
Confidence 6899999999999999999753 21011111111 11121 234567999999996522222 345 8999999999
Q ss_pred CCCCCccc-HHHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEME-TFEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~e-t~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++..-.-+ ..+++..+.. .++| +|+|.||+|+........+..+.+... .+.++|++||+++ .
T Consensus 82 ~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~~~~~~~~a~~------~~~~~~e~SA~~~-----~ 149 (221)
T cd04148 82 VTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVSVQEGRACAVV------FDCKFIETSAGLQ-----H 149 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceecHHHHHHHHHH------cCCeEEEecCCCC-----C
Confidence 98542211 1233343333 3566 566899999864321111111122211 1467899999977 5
Q ss_pred HHHHHHHHHHhhc
Q 010060 223 EIRNLARFISVMK 235 (519)
Q Consensus 223 ei~~LlR~I~~~~ 235 (519)
++..+...|....
T Consensus 150 gv~~l~~~l~~~~ 162 (221)
T cd04148 150 NVDELLEGIVRQI 162 (221)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666655443
No 200
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=4.9e-11 Score=112.85 Aligned_cols=148 Identities=16% Similarity=0.086 Sum_probs=85.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccC-ccccccccE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVD 147 (519)
.|+|+|.+|||||||+++|+...-.. ...+....+ .+. .+....+.++||||. +.. ....++.||++|||+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d 81 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYD 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEE
Confidence 68999999999999999999763211 111111001 111 223456889999995 333 2345789999999999
Q ss_pred CCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 148 GSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
++..-.-.. ..++..+.. ...| +++|.||.|+......-......+... .+.+++.+||+++ .+
T Consensus 82 ~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~evSa~~~-----~~ 149 (188)
T cd04125 82 VTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDSNIAKSFCDS------LNIPFFETSAKQS-----IN 149 (188)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCHHHHHHHHHH------cCCeEEEEeCCCC-----CC
Confidence 975422111 123333332 2344 667999999874321111111222111 2458999999977 45
Q ss_pred HHHHHHHHHhhc
Q 010060 224 IRNLARFISVMK 235 (519)
Q Consensus 224 i~~LlR~I~~~~ 235 (519)
+..++..+....
T Consensus 150 i~~~f~~l~~~~ 161 (188)
T cd04125 150 VEEAFILLVKLI 161 (188)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 201
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.29 E-value=8.5e-11 Score=113.14 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=87.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcccccccc--EEE----E-ecCceeEEEEcCCCCc------hhHHHH--hhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP--ITI----V-SGKQRRLQFVECPNDI------NGMIDC--AKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~--iti----~-~~~~~rl~fIDtPGdl------~smld~--ak~ 138 (519)
|..|+|+|.+|+|||||+|+|++...........+. ++. + ......++++||||.- ...+.. +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 578999999999999999999985211100000110 111 1 1123478999999941 223332 456
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH------------HHHHHHHHHHHhhhhhccCCc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK------------KLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k------------~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
+|++|+|.+. .+......++..++..+.|. ++|+||+|+..+.. .+.++.+.+...+..+.....
T Consensus 81 ~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~-ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p 157 (197)
T cd04104 81 YDFFIIISST--RFSSNDVKLAKAIQCMGKKF-YFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEP 157 (197)
T ss_pred cCEEEEEeCC--CCCHHHHHHHHHHHHhCCCE-EEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8998888654 46767778888888888875 56899999964222 122333333333333334567
Q ss_pred eEEEEecccC
Q 010060 207 KLFYLSGLIH 216 (519)
Q Consensus 207 kVf~lSAl~g 216 (519)
+||.+|+...
T Consensus 158 ~v~~vS~~~~ 167 (197)
T cd04104 158 PVFLVSNFDP 167 (197)
T ss_pred CEEEEeCCCh
Confidence 8999998743
No 202
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.29 E-value=4.3e-11 Score=104.26 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=86.0
Q ss_pred EECCCCCChHHHHHHHHhcccc-Cc-cccccccEEEE---ecCceeEEEEcCCCCch--h-HHHHhhccCEEEEEEeCCC
Q 010060 79 VQGPPQVGKSLLIKSLIKHYTK-HN-VPEVRGPITIV---SGKQRRLQFVECPNDIN--G-MIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 79 VVG~pnvGKSTLIn~Ll~~~Tr-~~-v~~~~G~iti~---~~~~~rl~fIDtPGdl~--s-mld~ak~ADlVLLVVDas~ 150 (519)
|+|++|+|||||+++|++.... .. .....-..... ......+.++|+||... . ....++.+|++++|+|++.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 5899999999999999987541 11 11110101111 12366899999999532 2 3456789999999999987
Q ss_pred CCcccHHH-----HHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHH
Q 010060 151 GFEMETFE-----FLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 151 g~e~et~e-----~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
+...+... .+......+.| +++|+||+|+...... .... ....+ ......++|++|+..+ .++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~-~~~~--~~~~~--~~~~~~~~~~~s~~~~-----~~i~ 149 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVV-SEEE--LAEQL--AKELGVPYFETSAKTG-----ENVE 149 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccch-HHHH--HHHHH--HhhcCCcEEEEecCCC-----CChH
Confidence 65544432 22333445667 5568999999753221 1111 01111 1235688999999866 4555
Q ss_pred HHHHHH
Q 010060 226 NLARFI 231 (519)
Q Consensus 226 ~LlR~I 231 (519)
.++.+|
T Consensus 150 ~~~~~l 155 (157)
T cd00882 150 ELFEEL 155 (157)
T ss_pred HHHHHH
Confidence 555444
No 203
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.29 E-value=6.7e-11 Score=116.52 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=68.7
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYGF 152 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g~ 152 (519)
.|+|+|.+|||||||+++|+...-.....++.+.+.........+.+|||||. +..+. ..+..||++|+|+|++...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~ 81 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ 81 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999763222222222222222334567899999995 44433 3578999999999998542
Q ss_pred cccHH--HHHHHHHh--cCCCeEEEEEEccCCCC
Q 010060 153 EMETF--EFLNLMQN--HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 153 e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~ 182 (519)
.-+.. .+..+.+. .++| +|+|.||+|+..
T Consensus 82 Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~ 114 (220)
T cd04126 82 SLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTE 114 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 22211 23333332 3455 667999999974
No 204
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.29 E-value=4.1e-11 Score=116.59 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=85.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc-cCccccccccE---EEE--ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPI---TIV--SGKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~i---ti~--~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
..|+|+|.+|||||||+++|+...- .....++.-.+ ++. .+....+.++||||. +..+. ..++.+|++|+|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 5799999999999999999997531 11111110000 111 123467899999995 33333 456889999999
Q ss_pred EeCCCCCcccH-HHHHHHHH-h--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEMET-FEFLNLMQ-N--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~-~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+|.+..-.-+. .+.+..+. . ...+.+++|.||.|+........+....+.+.+ +.++|.+||++|
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~------~~~~~e~Sak~g----- 151 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDL------GMKYIETSARTG----- 151 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHh------CCEEEEEeCCCC-----
Confidence 99975321111 12222221 1 122446668999999753221122222222222 378999999977
Q ss_pred hHHHHHHHHHHh
Q 010060 222 REIRNLARFISV 233 (519)
Q Consensus 222 ~ei~~LlR~I~~ 233 (519)
.++..+...|+.
T Consensus 152 ~~v~e~f~~l~~ 163 (211)
T cd04111 152 DNVEEAFELLTQ 163 (211)
T ss_pred CCHHHHHHHHHH
Confidence 455555555544
No 205
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.28 E-value=7.8e-11 Score=109.60 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=88.6
Q ss_pred EEEECCCCCChHHHHHHHHhccccC-ccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCCC
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYGF 152 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g~ 152 (519)
|+++|++|||||||+++|++..... ...++.-.+..+......+.+|||||. +..++ ..++.||++|+|+|++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7899999999999999999763111 111111111223455678999999995 44544 4578999999999997643
Q ss_pred ccc-HH-HHHHHHHh-cCCCeEEEEEEccCCCCCHHHHHHHHHHHH-HhhhhhccCCceEEEEecccCC-cCChhHHHHH
Q 010060 153 EME-TF-EFLNLMQN-HGLPRVMGVLTHLDKFKDVKKLRKTKQRLK-HRFWTEIYDGAKLFYLSGLIHG-KYSKREIRNL 227 (519)
Q Consensus 153 e~e-t~-e~L~~L~~-~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk-~~f~~e~~~~~kVf~lSAl~g~-~Y~~~ei~~L 227 (519)
... .. .+..++.. .++| +++|.||+|+.... ....+...+. ..+.. -.+..+|.+||++.. -...+++.++
T Consensus 82 s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~--~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 82 RLPLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-SVQEIHKELELEPIAR--GRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred HHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-CHHHHHHHhCChhhcC--CCceEEEEeeecCCCChhHHHHHHHH
Confidence 211 11 22333332 4667 55699999986432 2222222211 01111 124678999998731 1123566666
Q ss_pred HHHH
Q 010060 228 ARFI 231 (519)
Q Consensus 228 lR~I 231 (519)
...+
T Consensus 158 ~~~~ 161 (164)
T cd04162 158 LSQL 161 (164)
T ss_pred HHHH
Confidence 6544
No 206
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.28 E-value=3.4e-11 Score=132.54 Aligned_cols=123 Identities=14% Similarity=0.238 Sum_probs=88.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc---c-----------Ccccc-----ccccEEE------EecCceeEEEEcCCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT---K-----------HNVPE-----VRGPITI------VSGKQRRLQFVECPN 127 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r-----------~~v~~-----~~G~iti------~~~~~~rl~fIDtPG 127 (519)
..++|+|+||+|+|||||+++|+.... + ..+.+ ...++++ +.+.+..+.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 457999999999999999999975310 0 01111 0112222 345678999999999
Q ss_pred C--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 128 D--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 128 d--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
+ +.. ++.++..||++|+|+|++.+++.++..++..+...++|. |+|+||+|+... ...++.+.++..+
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pi-ivviNKiD~~~~--~~~~ll~~i~~~l 160 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPI-FTFMNKLDRDIR--DPLELLDEVENEL 160 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccccCC--CHHHHHHHHHHHh
Confidence 6 443 777889999999999999999988888999888889994 558999998641 1233444444433
No 207
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.28 E-value=3.1e-11 Score=139.64 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=89.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc---c-----------CccccccccEEEE------ec----------------C
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT---K-----------HNVPEVRGPITIV------SG----------------K 116 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r-----------~~v~~~~G~iti~------~~----------------~ 116 (519)
.-++|||+||+++|||||+.+|+..+. + ......+| +|+. .+ .
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rg-iti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERG-ITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhC-CceecceeEEEeecccccccccccccCCC
Confidence 347999999999999999999997531 0 00000111 2221 11 2
Q ss_pred ceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-----CH----
Q 010060 117 QRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-----DV---- 184 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-----~~---- 184 (519)
...+.||||||+ |. .+..++..+|.+|+||||..|++.++..++..+...++|.++ ++||+|+.- +.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~-~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEE-EEECCcccchhhcCCHHHHH
Confidence 567899999996 33 488889999999999999999999999999999999999765 899999971 11
Q ss_pred HHHHHHHHHHH
Q 010060 185 KKLRKTKQRLK 195 (519)
Q Consensus 185 k~l~~~kk~Lk 195 (519)
..+..+.+.++
T Consensus 176 ~~~~~vi~~in 186 (843)
T PLN00116 176 QTFSRVIENAN 186 (843)
T ss_pred HHHHHHHHHHH
Confidence 34556666665
No 208
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.28 E-value=5.7e-11 Score=115.42 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccc-cCccccccccE---EEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPI---TIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
.|+++|..|||||||+++++...- .....++.-.+ ++. .+....+.+|||+|. +.++. ..++.||++|||+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999987521 11111111011 111 223467899999995 55544 45789999999999
Q ss_pred CCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 148 GSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 148 as~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
.+..-.-+.. ..+..+.. .++| +|+|.||+|+.............+.+ + ..+.++|.+||++| .+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~~~~~~~~a~----~-~~~~~~~etSAktg-----~g 150 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREISRQQGEKFAQ----Q-ITGMRFCEASAKDN-----FN 150 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCHHHHHHHHH----h-cCCCEEEEecCCCC-----CC
Confidence 9854322211 23333432 3566 56689999986422111111122211 1 12467999999987 56
Q ss_pred HHHHHHHHHhhcC
Q 010060 224 IRNLARFISVMKF 236 (519)
Q Consensus 224 i~~LlR~I~~~~~ 236 (519)
+..+...|+....
T Consensus 151 V~e~F~~l~~~~~ 163 (202)
T cd04120 151 VDEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665443
No 209
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.28 E-value=7.8e-11 Score=110.37 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=86.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccc-cCccccccccE--E-E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPI--T-I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~i--t-i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
.|++||.++||||||+++++...- .....++.-.+ . + ..+....+.|+||||. +..+. ..++.||++|||+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 588999999999999999998621 11111110011 1 1 1233567999999995 44443 34789999999999
Q ss_pred CCCCCccc-HHHHHHHHHhcC---CCeEEEEEEccCCCCCHHH--HHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 148 GSYGFEME-TFEFLNLMQNHG---LPRVMGVLTHLDKFKDVKK--LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 148 as~g~e~e-t~e~L~~L~~~G---iP~VI~VlNKlDl~~~~k~--l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
++..-.-+ ..+++..+.... .+.+++|.||+|+...... ..+....+...+ ..++|.+||++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~e~Sa~~g----- 150 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM------QAEYWSVSALSG----- 150 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc------CCeEEEEECCCC-----
Confidence 97521111 123344333222 2347789999998643210 111111222211 357899999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 151 ~~v~~lf~~l~~~ 163 (170)
T cd04108 151 ENVREFFFRVAAL 163 (170)
T ss_pred CCHHHHHHHHHHH
Confidence 4566666555544
No 210
>PLN03110 Rab GTPase; Provisional
Probab=99.28 E-value=5.3e-11 Score=116.13 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=89.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-ccccc---ccEEEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVR---GPITIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~---G~iti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLV 145 (519)
.+.|+|+|++|||||||+++|++..-... ..++. ...++. .+....+.+|||||. +..+.. .++.||++|||
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999999999999987632111 11110 001111 233457899999996 444444 46899999999
Q ss_pred EeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+|.+....-+.. ..+..+.. .++| +++|.||+|+........+....+... .+.+++++||++|
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~~~~~~l~~~------~~~~~~e~SA~~g----- 159 (216)
T PLN03110 92 YDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAEEDGQALAEK------EGLSFLETSALEA----- 159 (216)
T ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCHHHHHHHHHH------cCCEEEEEeCCCC-----
Confidence 999754222221 33444443 3566 556899999864221111222222211 2578999999977
Q ss_pred hHHHHHHHHHHhhc
Q 010060 222 REIRNLARFISVMK 235 (519)
Q Consensus 222 ~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 160 ~~v~~lf~~l~~~i 173 (216)
T PLN03110 160 TNVEKAFQTILLEI 173 (216)
T ss_pred CCHHHHHHHHHHHH
Confidence 44555554444433
No 211
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.27 E-value=1.3e-10 Score=116.31 Aligned_cols=154 Identities=13% Similarity=0.191 Sum_probs=91.5
Q ss_pred EEEEECCCCCChHHHHHHHHhc-cccCcccccccc-EEEE--ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGP-ITIV--SGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~-iti~--~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.|+|+|.+|||||||+++++.. +......++... ...+ .+....+.||||+|. +..+.. .+..+|++|||+|.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv 81 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSL 81 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999864 211111111100 1111 233467889999995 444444 35789999999999
Q ss_pred CCCCcccHH-HHHHHHHh------------cCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 149 SYGFEMETF-EFLNLMQN------------HGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 149 s~g~e~et~-e~L~~L~~------------~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
+....-+.. .++..+.. .++| +|+|.||+|+..... ...++.+.+. ......+|.+||+
T Consensus 82 ~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~v~~~ei~~~~~------~~~~~~~~evSAk 154 (247)
T cd04143 82 DNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPREVQRDEVEQLVG------GDENCAYFEVSAK 154 (247)
T ss_pred CCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccccCHHHHHHHHH------hcCCCEEEEEeCC
Confidence 753211111 12222211 2466 556899999974211 1222222221 1124679999999
Q ss_pred cCCcCChhHHHHHHHHHHhhcCCCCcc
Q 010060 215 IHGKYSKREIRNLARFISVMKFPPLSW 241 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~~~~~r~~~w 241 (519)
+| .++..+...|......|..+
T Consensus 155 tg-----~gI~elf~~L~~~~~~p~e~ 176 (247)
T cd04143 155 KN-----SNLDEMFRALFSLAKLPNEM 176 (247)
T ss_pred CC-----CCHHHHHHHHHHHhcccccc
Confidence 77 67888888877765555544
No 212
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.26 E-value=8.6e-11 Score=120.85 Aligned_cols=144 Identities=21% Similarity=0.269 Sum_probs=93.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccC------ccccccccEEEEecCceeEEEEcCCCCch----------hHHHHhhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKH------NVPEVRGPITIVSGKQRRLQFVECPNDIN----------GMIDCAKIA 139 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v~~~~G~iti~~~~~~rl~fIDtPGdl~----------smld~ak~A 139 (519)
-|++||+||+||||||+++.....+- ++....|.+.+ ....++++-|.||-+. ..|..+..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~--~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV--DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe--cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 47889999999999999999873221 11111342222 4566899999998533 478889999
Q ss_pred CEEEEEEeCCCCCc--c-cHH-HHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEE
Q 010060 140 DLALLLIDGSYGFE--M-ETF-EFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 140 DlVLLVVDas~g~e--~-et~-e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
-++++|||.+..-. + +.+ .+..-|.+ ...|.+| |+||+|++.+.+.+...++.+.+.. .....+|
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~iv-v~NKiD~~~~~e~~~~~~~~l~~~~-----~~~~~~~ 312 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIV-VLNKIDLPLDEEELEELKKALAEAL-----GWEVFYL 312 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEE-EEeccCCCcCHHHHHHHHHHHHHhc-----CCCccee
Confidence 99999999973221 1 222 22233332 4677775 8999997767777777777665432 2333334
Q ss_pred EecccCCcCChhHHHHHHHHHH
Q 010060 211 LSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
+||+++ .++..|++.+.
T Consensus 313 ISa~t~-----~g~~~L~~~~~ 329 (369)
T COG0536 313 ISALTR-----EGLDELLRALA 329 (369)
T ss_pred eehhcc-----cCHHHHHHHHH
Confidence 999876 55666664433
No 213
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.26 E-value=4.8e-11 Score=112.74 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=98.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.....|+++|+.|+|||||++.|.........++..-.+..+...+..+.++|++|+ +..+++ ....+|.+|||||+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs 91 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS 91 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEec
Confidence 556899999999999999999998754333332222222233456789999999997 555554 46789999999999
Q ss_pred CCCCc-ccHH-HHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCceEEEEecccCCcCCh
Q 010060 149 SYGFE-METF-EFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 149 s~g~e-~et~-e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~~Y~~ 221 (519)
+..-. .+.. ++..++. ..++| +++++||.|+...- ...++...+. ...+. ....++.+||++|
T Consensus 92 sd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~-~~~~i~~~l~---l~~l~~~~~~~v~~~sa~~g----- 161 (175)
T PF00025_consen 92 SDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAM-SEEEIKEYLG---LEKLKNKRPWSVFSCSAKTG----- 161 (175)
T ss_dssp TGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSS-THHHHHHHTT---GGGTTSSSCEEEEEEBTTTT-----
T ss_pred ccceeecccccchhhhcchhhcccce-EEEEeccccccCcc-hhhHHHhhhh---hhhcccCCceEEEeeeccCC-----
Confidence 85321 1223 3333333 24667 55689999986421 2233333221 12222 3567899999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
+++.+.+.+|..+
T Consensus 162 ~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 162 EGVDEGLEWLIEQ 174 (175)
T ss_dssp BTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 6777777766543
No 214
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.1e-11 Score=129.96 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=79.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccE-----EEEecCceeEEEEcCCCCch------------hHHH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI-----TIVSGKQRRLQFVECPNDIN------------GMID 134 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i-----ti~~~~~~rl~fIDtPGdl~------------smld 134 (519)
..++.|+|+|+||||||||+|+|+... +..|..+.|.. +.+.-.+..+.++||.|-.. ..-.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d-rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED-RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC-ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 455899999999999999999999973 22232222311 12344678899999998322 2334
Q ss_pred HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCC-----------CeEEEEEEccCCCCC
Q 010060 135 CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGL-----------PRVMGVLTHLDKFKD 183 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~Gi-----------P~VI~VlNKlDl~~~ 183 (519)
.+..||+++||+||.+....+...+.+.|..-|. .+++.|+||+|+..+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 5789999999999988777777777777765332 456678999998754
No 215
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.26 E-value=1.3e-10 Score=107.73 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=86.0
Q ss_pred EEEEECCCCCChHHHHHHHHhcc-ccCccccccccE--EEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI--TIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.|+|+|++|+|||||+++++... ...........+ ++. ......+.+|||||. +..+.. ....+|++|+|+|.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~ 81 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSV 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEEC
Confidence 68999999999999999998752 111111111111 121 223456789999995 333333 35789999999999
Q ss_pred CCCCcccHH--HHHHHHH--hcCCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEEeccc
Q 010060 149 SYGFEMETF--EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 149 s~g~e~et~--e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
+..-.-+.. .++..+. ..+.| +++|.||+|+.........+. ..... + .......++|.+||++
T Consensus 82 ~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 82 VNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK-L-AKEIGAHCYVECSALT 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH-H-HHHcCCCEEEEecCCc
Confidence 754221111 2333333 24677 456899999864322111110 00111 1 1112445799999997
Q ss_pred CCcCChhHHHHHHHHHHh
Q 010060 216 HGKYSKREIRNLARFISV 233 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~ 233 (519)
| .++..+...++.
T Consensus 159 ~-----~gi~~~f~~~~~ 171 (174)
T cd04135 159 Q-----KGLKTVFDEAIL 171 (174)
T ss_pred C-----CCHHHHHHHHHH
Confidence 7 567777665544
No 216
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.25 E-value=1.6e-10 Score=107.11 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC-ccccccccE--EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
..|+|+|++|||||||+++|++..... ...+....+ .+ +......+.++||||. +..+. ..+..+|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 479999999999999999999853211 111111111 11 1233457899999995 33332 34578999999999
Q ss_pred CCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHH---------HHHHhhhhhccCCceEEEEecc
Q 010060 148 GSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQ---------RLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 148 as~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk---------~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
.+..-.-+.. .++..++. .++| +++|.||+|+.........+.. ..+. + ........+|++||+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~-~-~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD-M-ANKIGAFGYMECSAK 158 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHH-H-HHHcCCcEEEEeccc
Confidence 8743211111 23333332 3667 5568999998753222111110 0000 0 011234579999999
Q ss_pred cCCcCChhHHHHHHHHHHh
Q 010060 215 IHGKYSKREIRNLARFISV 233 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~~ 233 (519)
+| .++.++...|..
T Consensus 159 ~~-----~~v~~lf~~l~~ 172 (175)
T cd01870 159 TK-----EGVREVFEMATR 172 (175)
T ss_pred cC-----cCHHHHHHHHHH
Confidence 76 677777766654
No 217
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.24 E-value=2e-10 Score=110.18 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=93.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-----cEEEEecCceeEEEEcCCCCch----------hHHH----H
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-----PITIVSGKQRRLQFVECPNDIN----------GMID----C 135 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-----~iti~~~~~~rl~fIDtPGdl~----------smld----~ 135 (519)
++|+++|.||+|||||+|+|++...-..-....+ ........++++.+|||||-.. .+.. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998732111000001 0111123567899999999311 1222 2
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhc-C---CCeEEEEEEccCCCCCHHHHHHHH----HHHHHhhhhhccCCce
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNH-G---LPRVMGVLTHLDKFKDVKKLRKTK----QRLKHRFWTEIYDGAK 207 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~-G---iP~VI~VlNKlDl~~~~k~l~~~k----k~Lk~~f~~e~~~~~k 207 (519)
...+|++|||+++.. +..+...++..++.. | +..+|+|+|+.|.+... .+.+.. ..|+..+. . -+..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~--~-c~~r 155 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLE--K-CGGR 155 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHH--H-hCCe
Confidence 356899999999987 777777777777653 3 34567789999987532 222221 22222110 0 1334
Q ss_pred EEEEecccCCcCChhHHHHHHHHHHhhcCC
Q 010060 208 LFYLSGLIHGKYSKREIRNLARFISVMKFP 237 (519)
Q Consensus 208 Vf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r 237 (519)
++.++......-....+..|+..|..+...
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 555554321111346788888888776553
No 218
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.4e-11 Score=126.66 Aligned_cols=217 Identities=18% Similarity=0.272 Sum_probs=142.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc------------------ccCc-----------cccccc-----cEEEEecCc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY------------------TKHN-----------VPEVRG-----PITIVSGKQ 117 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~------------------Tr~~-----------v~~~~G-----~iti~~~~~ 117 (519)
..+.+++++|+.++||||+-+.|+..+ .|.. -....| +...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 567899999999999999887777642 0000 000012 122345567
Q ss_pred eeEEEEcCCCC---chhHHHHhhccCEEEEEEeCC-----CCCcc--cHHHHHHHHHhcCCCeEEEEEEccCCCC---CH
Q 010060 118 RRLQFVECPND---INGMIDCAKIADLALLLIDGS-----YGFEM--ETFEFLNLMQNHGLPRVMGVLTHLDKFK---DV 184 (519)
Q Consensus 118 ~rl~fIDtPGd---l~smld~ak~ADlVLLVVDas-----~g~e~--et~e~L~~L~~~GiP~VI~VlNKlDl~~---~~ 184 (519)
++++++|+||+ .-+|+.++..||+.+||++|. .||+. ||.++..+++.+|+.+.|+++||+|-.. ..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 89999999997 446999999999999999995 34554 6789999999999999999999999753 45
Q ss_pred HHHHHHHHHHHHhhhhhc---cCCceEEEEecccCCcCCh--------hHHHHHHHHHHhhcCCCCccccCCCeE--EEE
Q 010060 185 KKLRKTKQRLKHRFWTEI---YDGAKLFYLSGLIHGKYSK--------REIRNLARFISVMKFPPLSWRTSHPYV--LVD 251 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~---~~~~kVf~lSAl~g~~Y~~--------~ei~~LlR~I~~~~~r~~~wR~~~PYv--lad 251 (519)
+...+++..+..++..-. .....++|+|+++|..... -....++.++..+ + .+.-+-..|+. +++
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l-~-~~~R~~~GP~~~pI~~ 314 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDEL-P-HLERILNGPIRCPVAN 314 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhcc-C-cccccCCCCEEeehhh
Confidence 567788887777664222 2456788999998831100 0011111112110 0 00111122553 344
Q ss_pred EEEecCCccccccCCCCCceEEEEEEEEeEEeecCc-EEEEecCCCeEEEeeec
Q 010060 252 RFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGI-KVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 252 r~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~-~VhIpG~Gdf~I~~I~~ 304 (519)
++.++ | .+|.|.|..+.++.|| ++.+|..-...|..|-.
T Consensus 315 Kykdm-------------G-Tvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ 354 (501)
T KOG0459|consen 315 KYKDM-------------G-TVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS 354 (501)
T ss_pred hcccc-------------c-eEEEEEecccceecCCeEEEccCCcceEEEEEec
Confidence 44332 4 5789999988886665 56778888888888854
No 219
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.24 E-value=2e-10 Score=108.06 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=87.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhc-cccCcccccccc--EEE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGP--ITI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~--iti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
+.|+|+|.+|||||||+.+++.. +........... .++ ..+....+.++||||. +..+.. ..+.||++|||+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 57999999999999999998874 222111111111 111 2334467899999995 333333 4678999999999
Q ss_pred CCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHH---------HHHhhhhhccCCceEEEEecc
Q 010060 148 GSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQR---------LKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 148 as~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~---------Lk~~f~~e~~~~~kVf~lSAl 214 (519)
.+..-.-+.. .++..+.. .++| +|+|.||+|+............. ... +..-....++|.+||+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA--MAKEIGAVKYLECSAL 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHH--HHHHcCCcEEEEeccc
Confidence 9753222211 13333332 2466 55689999996432211111110 000 1111233588999999
Q ss_pred cCCcCChhHHHHHHHHHHh
Q 010060 215 IHGKYSKREIRNLARFISV 233 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~~ 233 (519)
+| .++.++...+..
T Consensus 159 ~~-----~~i~~~f~~l~~ 172 (174)
T cd01871 159 TQ-----KGLKTVFDEAIR 172 (174)
T ss_pred cc-----CCHHHHHHHHHH
Confidence 87 567777666543
No 220
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.23 E-value=2.4e-10 Score=107.73 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=87.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhc-cccCccccccccE--EEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPI--TIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+|+|.+|||||||+++++.. +......++...+ ++. ......+.+|||+|. +..+.. ..+.||++|||+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 57999999999999999999864 2222112211111 121 233467889999995 434333 5678999999999
Q ss_pred CCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEEecc
Q 010060 148 GSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 148 as~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
.+..-.-+.. .++..+.. .++| +|+|.||+|+.........+. +...+ + ..-.....+|.+||+
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~-~-a~~~~~~~~~e~SA~ 158 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK-L-ARDLKAVKYVECSAL 158 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHH-H-HHHhCCcEEEEecCC
Confidence 9764322221 23333332 3566 566999999864322111110 00000 0 111234689999999
Q ss_pred cCCcCChhHHHHHHHHHH
Q 010060 215 IHGKYSKREIRNLARFIS 232 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~ 232 (519)
+| .++..+...+.
T Consensus 159 tg-----~~v~~~f~~~~ 171 (175)
T cd01874 159 TQ-----KGLKNVFDEAI 171 (175)
T ss_pred CC-----CCHHHHHHHHH
Confidence 87 56666665444
No 221
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.22 E-value=2.6e-10 Score=108.38 Aligned_cols=150 Identities=15% Similarity=0.228 Sum_probs=87.2
Q ss_pred EEEEECCCCCChHHHHHHHHhcc-ccCccccccccE---EEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI---TIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
.|+++|.++||||||+++++... ......+....+ ++. .+....+.+|||+|. +..++. .++.||++|+|+|
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D 81 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFD 81 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEE
Confidence 68999999999999999998752 211111111111 111 223467899999995 455444 4689999999999
Q ss_pred CCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCH--HHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 148 GSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDV--KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~--k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
++.....+. .+.+..+.. ...| + +|.||+|+.... .....+.+.... +. ... +.++|++||++|
T Consensus 82 ~t~~~s~~~i~~~~~~~~~~~~~~~p-i-lVgnK~Dl~~~~~~~~~~~~~~~~~~-~a-~~~-~~~~~e~SAk~g----- 151 (182)
T cd04128 82 LTRKSTLNSIKEWYRQARGFNKTAIP-I-LVGTKYDLFADLPPEEQEEITKQARK-YA-KAM-KAPLIFCSTSHS----- 151 (182)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCE-E-EEEEchhccccccchhhhhhHHHHHH-HH-HHc-CCEEEEEeCCCC-----
Confidence 975432221 123333332 2344 4 589999996311 111111111111 11 111 378999999977
Q ss_pred hHHHHHHHHHHhhc
Q 010060 222 REIRNLARFISVMK 235 (519)
Q Consensus 222 ~ei~~LlR~I~~~~ 235 (519)
.++..+...+....
T Consensus 152 ~~v~~lf~~l~~~l 165 (182)
T cd04128 152 INVQKIFKIVLAKA 165 (182)
T ss_pred CCHHHHHHHHHHHH
Confidence 56677776665443
No 222
>PTZ00416 elongation factor 2; Provisional
Probab=99.22 E-value=7.3e-11 Score=136.45 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=89.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc---c-----------CccccccccEEEE------ec----------CceeEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT---K-----------HNVPEVRGPITIV------SG----------KQRRLQFV 123 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T---r-----------~~v~~~~G~iti~------~~----------~~~rl~fI 123 (519)
.++|||+||+++|||||+++|+..+. + ......+ ++|+. .+ ....+.|+
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r-giti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQER-GITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhh-cceeeccceEEEeecccccccCCCceEEEEE
Confidence 46999999999999999999997521 0 0000011 22322 11 14579999
Q ss_pred cCCCC--ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC----C-C----HHHHHHHH
Q 010060 124 ECPND--IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF----K-D----VKKLRKTK 191 (519)
Q Consensus 124 DtPGd--l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~----~-~----~k~l~~~k 191 (519)
||||+ +. .+..++..+|.+|+|+|+..|++.++..++..+...++|.+ +|+||+|+. . + ...+..+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~~~~~~~~~~~~~~~~~~ii 176 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRAILELQLDPEEIYQNFVKTI 176 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhhhhhcCCCHHHHHHHHHHHH
Confidence 99996 33 47888999999999999999999999999999999999865 589999996 2 1 13455666
Q ss_pred HHHHHhh
Q 010060 192 QRLKHRF 198 (519)
Q Consensus 192 k~Lk~~f 198 (519)
..++..+
T Consensus 177 ~~in~~l 183 (836)
T PTZ00416 177 ENVNVII 183 (836)
T ss_pred HHHHHHH
Confidence 6666544
No 223
>PLN03108 Rab family protein; Provisional
Probab=99.22 E-value=1.7e-10 Score=111.94 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=86.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-ccCcccccc---ccEEE-EecCceeEEEEcCCCCc--hh-HHHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVR---GPITI-VSGKQRRLQFVECPNDI--NG-MIDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~---G~iti-~~~~~~rl~fIDtPGdl--~s-mld~ak~ADlVLLV 145 (519)
...|+|+|++|+|||||+++|+... ......++. ..-.+ +......+.+|||||.. .. ....++.||++|+|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 3689999999999999999999752 111101110 00011 12234568899999963 23 33456789999999
Q ss_pred EeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++..-.-+.. ..+..+.. ..+| +++|.||+|+...... ..+..+.. +. .+.++|.+||+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~~~~~~~~-~~------~~~~~~e~Sa~~~---- 153 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVSTEEGEQFA-KE------HGLIFMEASAKTA---- 153 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCCCHHHHHHHH-HH------cCCEEEEEeCCCC----
Confidence 999753221111 22222222 2456 5668999998642111 11112211 11 1457999999977
Q ss_pred hhHHHHHHHHHHhhcC
Q 010060 221 KREIRNLARFISVMKF 236 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~~ 236 (519)
..+..++..++....
T Consensus 154 -~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 154 -QNVEEAFIKTAAKIY 168 (210)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 456665555554443
No 224
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.21 E-value=2.5e-10 Score=106.29 Aligned_cols=147 Identities=11% Similarity=0.145 Sum_probs=88.0
Q ss_pred EEEEECCCCCChHHHHHHHHhcc-ccCccccccc---cEEEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRG---PITIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G---~iti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
.|+|+|.+|||||||+++++... ......++.- .+.+. ......+.++||||. +..+. .....+|++|+|+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 81 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFD 81 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEE
Confidence 68999999999999999998643 1111111100 11111 123467889999995 22333 24578999999999
Q ss_pred CCCCCcccHH-HHHHHHHh-c-CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 148 GSYGFEMETF-EFLNLMQN-H-GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 148 as~g~e~et~-e~L~~L~~-~-GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
++.+..-+.. .++..+.. . ++| +++|.||+|+.... ...... .+.. ....++|.+||++| .++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-~~~~~~-~~~~------~~~~~~~e~Sa~~~-----~~v 147 (166)
T cd00877 82 VTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-VKAKQI-TFHR------KKNLQYYEISAKSN-----YNF 147 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhccccc-CCHHHH-HHHH------HcCCEEEEEeCCCC-----CCh
Confidence 9864332221 23333332 2 567 56689999997321 111111 1111 13578999999977 567
Q ss_pred HHHHHHHHhhcC
Q 010060 225 RNLARFISVMKF 236 (519)
Q Consensus 225 ~~LlR~I~~~~~ 236 (519)
..+...|+....
T Consensus 148 ~~~f~~l~~~~~ 159 (166)
T cd00877 148 EKPFLWLARKLL 159 (166)
T ss_pred HHHHHHHHHHHH
Confidence 777766665443
No 225
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.21 E-value=1.7e-10 Score=109.80 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=89.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-cccccccE--EE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
+.|+|+|.+|||||||+++++...-... ..++...+ .+ ..+....+.|+||||. +..+.. ....||++|+|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 3689999999999999999987632111 11110111 11 1233467899999995 333322 4578999999999
Q ss_pred CCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHH----------HHHHHhhhhhccCCceEEEEec
Q 010060 148 GSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTK----------QRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 148 as~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~k----------k~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+..-.-+.. ..+..+.. .++| +|+|.||+|+...... .... ..... +.......++|.+||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~SA 156 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNE-RDDLQRYGKHTISYEEGLA--VAKRINALRYLECSA 156 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhh-HHHHhhccCCCCCHHHHHH--HHHHcCCCEEEEccC
Confidence 8754222211 23333433 3666 6679999999753221 1110 00111 111123467899999
Q ss_pred ccCCcCChhHHHHHHHHHHhhcC
Q 010060 214 LIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
++| .++.++...|.....
T Consensus 157 k~~-----~~v~e~f~~l~~~~~ 174 (189)
T cd04134 157 KLN-----RGVNEAFTEAARVAL 174 (189)
T ss_pred CcC-----CCHHHHHHHHHHHHh
Confidence 977 567777777665544
No 226
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=2.4e-10 Score=111.90 Aligned_cols=151 Identities=12% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-ccccc---ccEEEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVR---GPITIV-SGKQRRLQFVECPND--INGMID-CAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~---G~iti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVL 143 (519)
.+...|+|||.+|||||||+++++...-... ..++. ..+++. ......+.+|||||. +..+.. ..+.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 6678999999999999999999875421111 11111 111121 123468899999995 445544 468999999
Q ss_pred EEEeCCCCCcccHH-HHHHHHH--hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 144 LLIDGSYGFEMETF-EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 144 LVVDas~g~e~et~-e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|+|.+....-+.. ..+..+. ..++| +++|.||+|+....-..... .+.. ....++|.+||++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~~~~--~~~~------~~~~~~~e~SAk~~---- 157 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV--TFHR------KKNLQYYEISAKSN---- 157 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCHHHH--HHHH------hcCCEEEEcCCCCC----
Confidence 99999864322211 2233332 24566 55689999985321101111 1111 13467899999987
Q ss_pred hhHHHHHHHHHHhhcC
Q 010060 221 KREIRNLARFISVMKF 236 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~~ 236 (519)
.++..++..|+....
T Consensus 158 -~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 158 -YNFEKPFLYLARKLA 172 (219)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 567777766665543
No 227
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.21 E-value=3.2e-10 Score=104.79 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=84.9
Q ss_pred EEEEECCCCCChHHHHHHHHhcc-ccCccccccccE---EEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI---TIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVD 147 (519)
.|+|+|++++|||||+++++... ......++...+ ++. .+....+.++||||. +..+ ....+.+|++++|+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 68999999999999999998652 111111110001 111 222457889999995 3333 345689999999999
Q ss_pred CCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 148 GSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
.+..-.-+. ..++..+... .+| +++|.||.|+........+....+.+. -..++|.+||++| .+
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~~~~~~~~~~------~~~~~~e~Sa~~~-----~~ 149 (161)
T cd04117 82 ISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGDEQGNKLAKE------YGMDFFETSACTN-----SN 149 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCHHHHHHHHHH------cCCEEEEEeCCCC-----CC
Confidence 875311111 1233333222 345 566899999864221111122222211 1367899999977 56
Q ss_pred HHHHHHHHHh
Q 010060 224 IRNLARFISV 233 (519)
Q Consensus 224 i~~LlR~I~~ 233 (519)
+..+...|..
T Consensus 150 v~~~f~~l~~ 159 (161)
T cd04117 150 IKESFTRLTE 159 (161)
T ss_pred HHHHHHHHHh
Confidence 7777766653
No 228
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.20 E-value=3e-10 Score=112.60 Aligned_cols=72 Identities=31% Similarity=0.479 Sum_probs=52.1
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc------cccccccEEEEecCceeEEEEcCCCCc----------hhHHHHhhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN------VPEVRGPITIVSGKQRRLQFVECPNDI----------NGMIDCAKIA 139 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~------v~~~~G~iti~~~~~~rl~fIDtPGdl----------~smld~ak~A 139 (519)
.|+++|+||+|||||+++|++...... +....| .+......++++||||.+ ..++..++.|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g---~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPG---VLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEE---EEEECCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 689999999999999999998642110 001122 223356789999999942 1356778999
Q ss_pred CEEEEEEeCCC
Q 010060 140 DLALLLIDGSY 150 (519)
Q Consensus 140 DlVLLVVDas~ 150 (519)
|++|+|+|++.
T Consensus 79 d~il~V~D~t~ 89 (233)
T cd01896 79 DLILMVLDATK 89 (233)
T ss_pred CEEEEEecCCc
Confidence 99999999864
No 229
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.18 E-value=1.6e-10 Score=111.93 Aligned_cols=106 Identities=20% Similarity=0.403 Sum_probs=67.9
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEE-Ee---cCceeEEEEcCCCC--chh-HHHHhhcc-CEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI-VS---GKQRRLQFVECPND--ING-MIDCAKIA-DLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti-~~---~~~~rl~fIDtPGd--l~s-mld~ak~A-DlVLLVVD 147 (519)
.|+++|++++|||||++.|+..............+.. .. .....+.+|||||+ +.. ....++.+ +.+|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999986322222211111111 11 23567999999996 333 45567777 99999999
Q ss_pred CCCCCc--ccHHHH----HHHHHh--cCCCeEEEEEEccCCCC
Q 010060 148 GSYGFE--METFEF----LNLMQN--HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 148 as~g~e--~et~e~----L~~L~~--~GiP~VI~VlNKlDl~~ 182 (519)
++.... .+..++ |..+.. .++| +++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcc
Confidence 986421 112222 222222 3677 556899999874
No 230
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.18 E-value=3.3e-10 Score=105.58 Aligned_cols=147 Identities=23% Similarity=0.307 Sum_probs=84.5
Q ss_pred EEEEECCCCCChHHHHHHHHhc-cccCccccccccE--EE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.|+++|.+|+|||||+++++.. +......+....+ ++ +.+....+.+|||||. +..+.. .++.||++|+|+|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~ 81 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSV 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEEC
Confidence 6899999999999999999764 2111111110011 11 1233467899999995 333332 45789999999999
Q ss_pred CCC--CcccHHHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHH--------HHH-HHHHHhhhhhccCCceEEEEeccc
Q 010060 149 SYG--FEMETFEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLR--------KTK-QRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 149 s~g--~e~et~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~--------~~k-k~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
+.. ++.....++..++. .++| +++|.||+|+......+. .+. +.... | .......++|++||++
T Consensus 82 ~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~-a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 82 VNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA-L-AEKIGACEYIECSALT 158 (173)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH-H-HHHhCCCeEEEEeCCC
Confidence 754 22222234444443 3566 567899999864321100 000 01111 1 1112345899999997
Q ss_pred CCcCChhHHHHHHHH
Q 010060 216 HGKYSKREIRNLARF 230 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~ 230 (519)
| .++..+...
T Consensus 159 ~-----~~v~~lf~~ 168 (173)
T cd04130 159 Q-----KNLKEVFDT 168 (173)
T ss_pred C-----CCHHHHHHH
Confidence 7 556666543
No 231
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=118.69 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=96.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc--ccCccccccccEEEE--ecCceeEEEEcCCCC-----------chhHHHH
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY--TKHNVPEVRGPITIV--SGKQRRLQFVECPND-----------INGMIDC 135 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~--Tr~~v~~~~G~iti~--~~~~~rl~fIDtPGd-----------l~smld~ 135 (519)
..+..+|+|||++|+||||||++|++.. .+..+.....|.+.. -..+..+.|.||.|- |.++|+.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 3445699999999999999999999652 222111111111111 123457888899882 5568888
Q ss_pred hhccCEEEEEEeCCCCCccc-HHHHHHHHHhcCCC------eEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceE
Q 010060 136 AKIADLALLLIDGSYGFEME-TFEFLNLMQNHGLP------RVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKL 208 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~e-t~e~L~~L~~~GiP------~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kV 208 (519)
+..||++|.|+|.+.+...+ ....|..|...|+| .+|-|-||+|..+..- .+| ..-.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------------e~E---~n~~ 318 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------------EEE---KNLD 318 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-------------ccc---cCCc
Confidence 99999999999999876444 44688888888886 3445678888653210 011 1116
Q ss_pred EEEecccCCcCChhHHHHHHHHHHhhcCCCCcc
Q 010060 209 FYLSGLIHGKYSKREIRNLARFISVMKFPPLSW 241 (519)
Q Consensus 209 f~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~w 241 (519)
+++||++| ++...++..+-........|
T Consensus 319 v~isaltg-----dgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 319 VGISALTG-----DGLEELLKAEETKVASETTV 346 (410)
T ss_pred cccccccC-----ccHHHHHHHHHHHhhhhhee
Confidence 78999988 56666765554443333333
No 232
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.18 E-value=4.7e-10 Score=114.78 Aligned_cols=74 Identities=27% Similarity=0.423 Sum_probs=58.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc------CccccccccEEEEecCceeEEEEcCCCCch----------hHHHHhh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK------HNVPEVRGPITIVSGKQRRLQFVECPNDIN----------GMIDCAK 137 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr------~~v~~~~G~iti~~~~~~rl~fIDtPGdl~----------smld~ak 137 (519)
-..|++||+|++|||||+++|++.... .++..++| ++.+++.+++++|+||-+. .++..+.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG---~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPG---MLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccc---eEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 468999999999999999999996321 12233446 6677889999999998432 2677889
Q ss_pred ccCEEEEEEeCCC
Q 010060 138 IADLALLLIDGSY 150 (519)
Q Consensus 138 ~ADlVLLVVDas~ 150 (519)
.||++++|+|+..
T Consensus 140 ~ADlIiiVld~~~ 152 (365)
T COG1163 140 NADLIIIVLDVFE 152 (365)
T ss_pred cCCEEEEEEecCC
Confidence 9999999999974
No 233
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.2e-10 Score=128.81 Aligned_cols=147 Identities=21% Similarity=0.320 Sum_probs=98.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEE------EecCceeEEEEcCCCCc--h-----h--HHHHh--h
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI------VSGKQRRLQFVECPNDI--N-----G--MIDCA--K 137 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti------~~~~~~rl~fIDtPGdl--~-----s--mld~a--k 137 (519)
..||++|.||||||||+|+|++.. +.+..-.| +|+ +...+.++.++|.||.+ . . +.|.+ .
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpG-vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPG-VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCC-eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 459999999999999999999974 22332223 333 23456679999999942 2 1 23333 3
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
.+|+++.|+||+. ++..-+-.|. |.+.|+| +|+++|.+|..+.. -.+--.+.|.+.+ +.||+++||.+|
T Consensus 81 ~~D~ivnVvDAtn-LeRnLyltlQ-LlE~g~p-~ilaLNm~D~A~~~-Gi~ID~~~L~~~L------GvPVv~tvA~~g- 149 (653)
T COG0370 81 KPDLIVNVVDATN-LERNLYLTLQ-LLELGIP-MILALNMIDEAKKR-GIRIDIEKLSKLL------GVPVVPTVAKRG- 149 (653)
T ss_pred CCCEEEEEcccch-HHHHHHHHHH-HHHcCCC-eEEEeccHhhHHhc-CCcccHHHHHHHh------CCCEEEEEeecC-
Confidence 6799999999973 4443333333 3456999 55689999987432 1222234455555 899999999977
Q ss_pred cCChhHHHHHHHHHHhhcCCCC
Q 010060 218 KYSKREIRNLARFISVMKFPPL 239 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~~r~~ 239 (519)
.++..+.+.+......+.
T Consensus 150 ----~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 150 ----EGLEELKRAIIELAESKT 167 (653)
T ss_pred ----CCHHHHHHHHHHhccccc
Confidence 568888888776555443
No 234
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.17 E-value=5.6e-10 Score=107.27 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=88.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccc---cEEEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRG---PITIV-SGKQRRLQFVECPND--INGMID-CAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G---~iti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLL 144 (519)
....|+|+|..+||||||+.++......... ..+.- ..++. .+....+.||||+|. +..++. .++.||++||
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 3478999999999999999999975221111 11100 11121 233467899999995 455554 4689999999
Q ss_pred EEeCCCCCcccHH-HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 145 LIDGSYGFEMETF-EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 145 VVDas~g~e~et~-e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|+|.+....-+.. ..+..+.. .++| +|+|.||+|+......-.+..+.+.+. .+.++|.+||++|
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v~~~~~~~~a~~------~~~~~~e~SAk~g----- 152 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQVATEQAQAYAER------NGMTFFEVSPLCN----- 152 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCCCHHHHHHHHHH------cCCEEEEecCCCC-----
Confidence 9999854322211 23333332 3566 566899999964211111111122111 2468999999987
Q ss_pred hHHHHHHHHHHh
Q 010060 222 REIRNLARFISV 233 (519)
Q Consensus 222 ~ei~~LlR~I~~ 233 (519)
.++..+...|+.
T Consensus 153 ~~V~~~F~~l~~ 164 (189)
T cd04121 153 FNITESFTELAR 164 (189)
T ss_pred CCHHHHHHHHHH
Confidence 445555544443
No 235
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.9e-10 Score=129.74 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=94.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc----------ccc------ccccEEEE------ecC-ceeEEEEcCCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN----------VPE------VRGPITIV------SGK-QRRLQFVECPND 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----------v~~------~~G~iti~------~~~-~~rl~fIDtPGd 128 (519)
...++|+|++|.++|||||..+|+..+.... ..+ .+| +|+. .+. ..++.||||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRG-ITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERG-ITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcC-CEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4568999999999999999999998641110 100 123 4443 345 489999999997
Q ss_pred ch--h-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 129 IN--G-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 129 l~--s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
+. . +..+++++|.+|+|+||..|+++++.-+++.+...++|+++ ++||+|... ..+..+.+.++.+|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~-fiNKmDR~~--a~~~~~~~~l~~~l 156 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRIL-FVNKMDRLG--ADFYLVVEQLKERL 156 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEE-EEECccccc--cChhhhHHHHHHHh
Confidence 44 4 67789999999999999999999999999999999999886 799999975 23455555666555
No 236
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.15 E-value=9.7e-10 Score=104.97 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=91.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-ccCccccccccEE---EEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPIT---IVSGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~it---i~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
...|+++|..+||||||+.+++... ......++...+. .+.+....+.+|||+|. +..+.. ....||++|+|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 3689999999999999999998752 1211111111111 12334567899999995 444443 457899999999
Q ss_pred eCCCCCcccHH--HHHHHHH--hcCCCeEEEEEEccCCCCCHHHHHHHHH---------HHHHhhhhhccCCceEEEEec
Q 010060 147 DGSYGFEMETF--EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKKLRKTKQ---------RLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 147 Das~g~e~et~--e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~l~~~kk---------~Lk~~f~~e~~~~~kVf~lSA 213 (519)
|.+..-.-+.. .++..+. ..++| +++|.||.|+.........+.. .... + ..-....++|.+||
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~-~-a~~~~~~~~~e~SA 159 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA-L-AKQIHAVKYLECSA 159 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH-H-HHHcCCcEEEEeCC
Confidence 99754222211 1222222 23566 5568999999643221111110 0000 1 11112357999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhcCCC
Q 010060 214 LIHGKYSKREIRNLARFISVMKFPP 238 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~~r~ 238 (519)
++| .++.++...+......+
T Consensus 160 k~g-----~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 160 LNQ-----DGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCC-----CCHHHHHHHHHHHHhcc
Confidence 977 56777777666555443
No 237
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.15 E-value=2.8e-10 Score=102.10 Aligned_cols=136 Identities=18% Similarity=0.257 Sum_probs=96.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCc-------hhHHHHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDI-------NGMIDCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl-------~smld~ak~ADlVLLVVD 147 (519)
..+++||.+++|||||.++|.+.++...-+ . -+..+ .--.|||||.+ .+.+..+..||++++|..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT---Q---Ave~~--d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT---Q---AVEFN--DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc---c---eeecc--CccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 468999999999999999999986542211 1 11111 11248999963 346677889999999999
Q ss_pred CCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHH
Q 010060 148 GSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNL 227 (519)
Q Consensus 148 as~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~L 227 (519)
++.+...-...|+.+ +...+|+|++|.|+.. .+++..++..|.. .+..+||.+|+. .+.++..|
T Consensus 74 and~~s~f~p~f~~~----~~k~vIgvVTK~DLae-d~dI~~~~~~L~e------aGa~~IF~~s~~-----d~~gv~~l 137 (148)
T COG4917 74 ANDPESRFPPGFLDI----GVKKVIGVVTKADLAE-DADISLVKRWLRE------AGAEPIFETSAV-----DNQGVEEL 137 (148)
T ss_pred ccCccccCCcccccc----cccceEEEEecccccc-hHhHHHHHHHHHH------cCCcceEEEecc-----CcccHHHH
Confidence 988765555556654 4445999999999986 3455555555432 246789999997 45788888
Q ss_pred HHHHHhh
Q 010060 228 ARFISVM 234 (519)
Q Consensus 228 lR~I~~~ 234 (519)
..++...
T Consensus 138 ~~~L~~~ 144 (148)
T COG4917 138 VDYLASL 144 (148)
T ss_pred HHHHHhh
Confidence 8777654
No 238
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.2e-10 Score=118.66 Aligned_cols=118 Identities=19% Similarity=0.383 Sum_probs=89.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc--------------ccCc------cccccccEEE------EecCceeEEEEcCCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY--------------TKHN------VPEVRGPITI------VSGKQRRLQFVECPND 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr~~------v~~~~G~iti------~~~~~~rl~fIDtPGd 128 (519)
+..|||.||++|||||...|+-.- .++. +...+| |.| +.+....+.++||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRG-ISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRG-ISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcC-ceEEeeEEEeccCCeEEeccCCCCc
Confidence 588999999999999998887530 1111 111233 222 3567889999999995
Q ss_pred --chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC--CHHHHHHHHHHH
Q 010060 129 --ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK--DVKKLRKTKQRL 194 (519)
Q Consensus 129 --l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~--~~k~l~~~kk~L 194 (519)
|.. +.+.+-.+|.+|.||||..|++++|..++..|+..|+| |+..+||+|... +-+-+.++.+.|
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L 161 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEEL 161 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHh
Confidence 554 88888889999999999999999999999999999999 667899999864 223344444444
No 239
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.10 E-value=3.5e-09 Score=112.21 Aligned_cols=149 Identities=13% Similarity=0.285 Sum_probs=98.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc----c---------cCcc-ccccc--------------cEEEE--ecCceeEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY----T---------KHNV-PEVRG--------------PITIV--SGKQRRLQ 121 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~----T---------r~~v-~~~~G--------------~iti~--~~~~~rl~ 121 (519)
+.-+.|+|+|+.++|||||||++.+.. - ++.+ ....| .+.+. .+....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 455899999999999999999999971 0 0001 11122 12222 23357899
Q ss_pred EEcCCCC----------chh----------------------HHHHhh-ccCEEEEEE-eCC------CCCcccHHHHHH
Q 010060 122 FVECPND----------ING----------------------MIDCAK-IADLALLLI-DGS------YGFEMETFEFLN 161 (519)
Q Consensus 122 fIDtPGd----------l~s----------------------mld~ak-~ADlVLLVV-Das------~g~e~et~e~L~ 161 (519)
||||+|- ... +...+. .+|+.|+|. |++ ..+......++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999981 111 344455 899999999 886 344455667999
Q ss_pred HHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 162 LMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 162 ~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
.|+..|+|.++ |+|+.|-..+. ...+.+.+...+ +.+++++|+..- ..+++..+++.+-
T Consensus 175 eLk~~~kPfii-vlN~~dp~~~e--t~~l~~~l~eky------~vpvl~v~c~~l---~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKELNKPFII-LLNSTHPYHPE--TEALRQELEEKY------DVPVLAMDVESM---RESDILSVLEEVL 233 (492)
T ss_pred HHHhcCCCEEE-EEECcCCCCch--hHHHHHHHHHHh------CCceEEEEHHHc---CHHHHHHHHHHHH
Confidence 99999999765 89999944222 223334443333 378889998644 6788888885443
No 240
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.08 E-value=1.5e-09 Score=109.11 Aligned_cols=158 Identities=25% Similarity=0.245 Sum_probs=102.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcccccc-c-cEE---EEecCceeEEEEcCCCC---------ch-hHHHH
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVR-G-PIT---IVSGKQRRLQFVECPND---------IN-GMIDC 135 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~-G-~it---i~~~~~~rl~fIDtPGd---------l~-smld~ 135 (519)
..+|.+|.++|.+|+|||||||+|++.... .+.... | .++ ..+.....++|+|+||- +. ..++.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~-~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVK-EVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCc-eeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 567899999999999999999999963211 111100 0 011 12345578999999982 33 37889
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCC-CeEEEEEEccCCCCCH-----------HH----HHHHHHHHHHhhh
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGL-PRVMGVLTHLDKFKDV-----------KK----LRKTKQRLKHRFW 199 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~Gi-P~VI~VlNKlDl~~~~-----------k~----l~~~kk~Lk~~f~ 199 (519)
+..+|++|+++++....-.-...|++-+...+. .++++|+|..|...+. .. +.+-...+.++|
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~- 193 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF- 193 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH-
Confidence 999999999999987665555566666655555 5678899999986431 11 111122232232
Q ss_pred hhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCC
Q 010060 200 TEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPP 238 (519)
Q Consensus 200 ~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~ 238 (519)
-+-.+|++.|+. .+=++..|++.+....+.+
T Consensus 194 ---q~V~pV~~~~~r-----~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 194 ---QEVKPVVAVSGR-----LPWGLKELVRALITALPVE 224 (296)
T ss_pred ---hhcCCeEEeccc-----cCccHHHHHHHHHHhCccc
Confidence 235677777744 3357888888887776643
No 241
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.07 E-value=2.9e-09 Score=101.11 Aligned_cols=149 Identities=16% Similarity=0.181 Sum_probs=88.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCccccccccEE--E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
+.|+++|.++||||+|+.+++... ......++...+. + ..+....+.++||+|. +..+. ...+.||++|||+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 468999999999999999999652 2211222211111 1 1234567899999994 44433 35789999999999
Q ss_pred CCCCCcccH--HHHHHHHHh--cCCCeEEEEEEccCCCCCHH----------HHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 148 GSYGFEMET--FEFLNLMQN--HGLPRVMGVLTHLDKFKDVK----------KLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 148 as~g~e~et--~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k----------~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+..-.-+. ...+..++. .++| +++|.||+|+..... ...+..+.+.. -.....+|.+||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~~~~E~SA 155 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-----QIGAAAYIECSS 155 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-----HcCCCEEEECCC
Confidence 974322111 123333332 3555 667999999964321 00111111211 122336899999
Q ss_pred ccCCcCChhHHHHHHHHHHhh
Q 010060 214 LIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~ 234 (519)
++| .++..+...+..+
T Consensus 156 k~~-----~nV~~~F~~~~~~ 171 (176)
T cd04133 156 KTQ-----QNVKAVFDAAIKV 171 (176)
T ss_pred Ccc-----cCHHHHHHHHHHH
Confidence 977 5677666666554
No 242
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.06 E-value=9.3e-10 Score=122.91 Aligned_cols=135 Identities=23% Similarity=0.335 Sum_probs=84.9
Q ss_pred CCCCCChHHHHHHHHhccccCccccccccEEE------EecCceeEEEEcCCCCc--hh------HHH-H--hhccCEEE
Q 010060 81 GPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI------VSGKQRRLQFVECPNDI--NG------MID-C--AKIADLAL 143 (519)
Q Consensus 81 G~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti------~~~~~~rl~fIDtPGdl--~s------mld-~--ak~ADlVL 143 (519)
|.||||||||+|+|++... .+....| +|+ +...+..+.++||||.. .. +.. . ...+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG-~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPG-VTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCC-eEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8899999999999998642 1222222 222 12345679999999952 21 121 1 24789999
Q ss_pred EEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 144 LLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 144 LVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+|+|++. ++. ..+++..+...++|.+ +|+||+|+.+.. ......+.+.+.+ +.+++++||++| .+
T Consensus 78 ~VvDat~-ler-~l~l~~ql~~~~~PiI-IVlNK~Dl~~~~-~i~~d~~~L~~~l------g~pvv~tSA~tg-----~G 142 (591)
T TIGR00437 78 NVVDASN-LER-NLYLTLQLLELGIPMI-LALNLVDEAEKK-GIRIDEEKLEERL------GVPVVPTSATEG-----RG 142 (591)
T ss_pred EEecCCc-chh-hHHHHHHHHhcCCCEE-EEEehhHHHHhC-CChhhHHHHHHHc------CCCEEEEECCCC-----CC
Confidence 9999985 332 2333344455788855 589999986322 1122233444433 578999999977 56
Q ss_pred HHHHHHHHHh
Q 010060 224 IRNLARFISV 233 (519)
Q Consensus 224 i~~LlR~I~~ 233 (519)
+.++...+..
T Consensus 143 i~eL~~~i~~ 152 (591)
T TIGR00437 143 IERLKDAIRK 152 (591)
T ss_pred HHHHHHHHHH
Confidence 6677766654
No 243
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.06 E-value=4e-09 Score=97.97 Aligned_cols=143 Identities=12% Similarity=0.170 Sum_probs=83.8
Q ss_pred EEEEECCCCCChHHHHHHHHhc-cccCccccccccE--EEE-ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPI--TIV-SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYG 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~i--ti~-~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g 151 (519)
.|+|+|.+|||||||+.+++.. +... .....+.+ ++. .+....+.++||+|.-.. ...+.||++++|+|.+..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~--~~~~~~~~~ilv~d~~~~ 78 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA--QFASWVDAVIFVFSLENE 78 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccceEEEEEECCEEEEEEEEECCCCCch--hHHhcCCEEEEEEECCCH
Confidence 6899999999999999987754 2211 11111221 111 233456899999986432 235779999999999754
Q ss_pred CcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCC-HHHH-HHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 152 FEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKD-VKKL-RKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 152 ~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~-~k~l-~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
-.-+. ...+..+.. .++| +++|.||.|+... .... .+..+.+.+. .....+|.+||++| .++
T Consensus 79 ~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~~~~~~~~~~~-----~~~~~~~e~SAk~~-----~~i 147 (158)
T cd04103 79 ASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVIDDARARQLCAD-----MKRCSYYETCATYG-----LNV 147 (158)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccCHHHHHHHHHH-----hCCCcEEEEecCCC-----CCH
Confidence 32222 123333332 3456 6678999997421 1111 1111222211 13468999999987 567
Q ss_pred HHHHHHHH
Q 010060 225 RNLARFIS 232 (519)
Q Consensus 225 ~~LlR~I~ 232 (519)
..+...++
T Consensus 148 ~~~f~~~~ 155 (158)
T cd04103 148 ERVFQEAA 155 (158)
T ss_pred HHHHHHHH
Confidence 66666554
No 244
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.05 E-value=3.2e-09 Score=110.73 Aligned_cols=138 Identities=19% Similarity=0.165 Sum_probs=85.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc--c-----------------------c--cccccEEEEe---------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--V-----------------------P--EVRGPITIVS--------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v-----------------------~--~~~G~iti~~--------- 114 (519)
.+.+.+|+|.|+||+|||||+..|........ + . ...+.+.+.+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 46779999999999999999999887531110 0 0 0001111111
Q ss_pred -------------cCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHH--HHHHHHhcCCCeEEEEEEccC
Q 010060 115 -------------GKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFE--FLNLMQNHGLPRVMGVLTHLD 179 (519)
Q Consensus 115 -------------~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e--~L~~L~~~GiP~VI~VlNKlD 179 (519)
..+..++||||+|.-.+-.+.+..||++|+|++...|.+.+... ++.+ .. |+|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aD-IiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMEL------AD-LIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhh------hh-eEEeehhc
Confidence 12467999999997666666788999999998754444333221 2222 22 45899999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhc---cCC-ceEEEEecccC
Q 010060 180 KFKDVKKLRKTKQRLKHRFWTEI---YDG-AKLFYLSGLIH 216 (519)
Q Consensus 180 l~~~~k~l~~~kk~Lk~~f~~e~---~~~-~kVf~lSAl~g 216 (519)
+.... ........++..+.... ..+ .+|+++||+++
T Consensus 206 l~~~~-~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g 245 (332)
T PRK09435 206 GDNKT-AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG 245 (332)
T ss_pred ccchh-HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCC
Confidence 98533 33444445554432100 112 58999999987
No 245
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.05 E-value=4.8e-09 Score=104.27 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=68.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-ccCccccccccEE--E-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
...|+|||.++||||+|+++++... ......++...++ + +.+....+.||||+|. +..+.. ..+.||++|||+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVy 92 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 92 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEE
Confidence 4689999999999999999998752 2111111111111 1 1334567999999995 444443 568999999999
Q ss_pred eCCCCCcccH--HHHHHHHHh--cCCCeEEEEEEccCCCC
Q 010060 147 DGSYGFEMET--FEFLNLMQN--HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 147 Das~g~e~et--~e~L~~L~~--~GiP~VI~VlNKlDl~~ 182 (519)
|.+..-.-+. ...+..+.. .+.| +|+|.||+|+..
T Consensus 93 Dit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 131 (232)
T cd04174 93 DISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRT 131 (232)
T ss_pred ECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccc
Confidence 9975322211 122233332 3555 667999999853
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.04 E-value=3.8e-09 Score=100.75 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc-ccCccccccccEE--E-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGMID-CAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLV 145 (519)
....|+++|.++||||||+++++... .....+++...++ + +......+.+|||+|. +..+.. ..+.||++|||
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 34689999999999999999998753 1111111111111 1 1234567999999995 444443 46889999999
Q ss_pred EeCCCCCcccH--HHHHHHHHh--cCCCeEEEEEEccCCCC
Q 010060 146 IDGSYGFEMET--FEFLNLMQN--HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 146 VDas~g~e~et--~e~L~~L~~--~GiP~VI~VlNKlDl~~ 182 (519)
+|.+....-+. ..++..++. ...| +|+|.||+|+..
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 123 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRT 123 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhc
Confidence 99975432222 123333332 2455 667899999853
No 247
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=3.8e-09 Score=100.17 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=66.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCccccccccE--EE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+++|.++||||||+++++... ......++...+ .+ +......+.+|||+|. +..+.. ..+.||++|+|+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 479999999999999999999762 111111111111 11 1234567899999995 333333 4689999999999
Q ss_pred CCCCCcccH--HHHHHHHHh--cCCCeEEEEEEccCCCC
Q 010060 148 GSYGFEMET--FEFLNLMQN--HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 148 as~g~e~et--~e~L~~L~~--~GiP~VI~VlNKlDl~~ 182 (519)
.+..-.-+. ..++..++. ...| +|+|.||+|+..
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~ 119 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRT 119 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhc
Confidence 975432221 123333332 2455 667899999864
No 248
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.03 E-value=1.2e-09 Score=100.95 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=47.6
Q ss_pred CceeEEEEcCCCC--c-----hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEcc
Q 010060 116 KQRRLQFVECPND--I-----NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHL 178 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l-----~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKl 178 (519)
....++||||||- . ..+.+.+..||++|+|++++..+.....+++........+.+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3467999999993 1 1255677999999999999988876666766666666667788899985
No 249
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.03 E-value=1.2e-09 Score=104.69 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=66.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE--ecCceeEEEEcCCCC--chh-HHHH---hhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV--SGKQRRLQFVECPND--ING-MIDC---AKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~--~~~~~rl~fIDtPGd--l~s-mld~---ak~ADlVLLVV 146 (519)
..|.++||+|+|||+|...|.......+++.....++.. ......+.+||+||+ +.. +++. ...|-.|||||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvv 83 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVV 83 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEE
Confidence 579999999999999999999986555544442222222 234678999999997 443 6665 78899999999
Q ss_pred eCCCCCccc---HH----HHHHHHH-hcCCCeEEEEEEccCCCC
Q 010060 147 DGSYGFEME---TF----EFLNLMQ-NHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 147 Das~g~e~e---t~----e~L~~L~-~~GiP~VI~VlNKlDl~~ 182 (519)
|++. +..+ .. .+|.... ....+.++++.||.|++.
T Consensus 84 DSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 84 DSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp ETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred eCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 9973 2221 11 3333333 234556778999999985
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.02 E-value=6.7e-09 Score=107.81 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=50.1
Q ss_pred EEEECCCCCChHHHHHHHHhcccc------CccccccccEEEE--------------------ec-CceeEEEEcCCCC-
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTK------HNVPEVRGPITIV--------------------SG-KQRRLQFVECPND- 128 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr------~~v~~~~G~iti~--------------------~~-~~~rl~fIDtPGd- 128 (519)
|++||.||+|||||+|+|++.... .++....|...+. .+ ....+.++|+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 689999999999999999987321 0000011211110 01 2246899999994
Q ss_pred --------ch-hHHHHhhccCEEEEEEeCCC
Q 010060 129 --------IN-GMIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 129 --------l~-smld~ak~ADlVLLVVDas~ 150 (519)
+. .+++.++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 22 37788999999999999963
No 251
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.01 E-value=5.7e-09 Score=98.99 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=84.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhc-cccCcccccccc-E-EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGP-I-TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~-i-ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVD 147 (519)
..|+|+|++|+|||||+++|... +........... . .+ .......+.++|+||. +..+. ..+..||++|+++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 47999999999999999999843 221111111000 0 01 1223356789999985 22221 24578999999999
Q ss_pred CCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHH--------HH--HHHHHHHHHhhhhhccCCceEEEEec
Q 010060 148 GSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVK--------KL--RKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 148 as~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k--------~l--~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+..-.-+.. .++..++. ..+| +|+|.||+|+..... .. .+....+.+. ....++|.+||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE-----IGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH-----hCCcEEEEccC
Confidence 8643211111 23444432 2455 666899999853110 00 0111112221 23357899999
Q ss_pred ccCCcCChhHHHHHHHHHHhh
Q 010060 214 LIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~ 234 (519)
++| .++..+...+...
T Consensus 156 ~~~-----~~v~~~f~~l~~~ 171 (187)
T cd04129 156 LTG-----EGVDDVFEAATRA 171 (187)
T ss_pred CCC-----CCHHHHHHHHHHH
Confidence 987 5677777666543
No 252
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.99 E-value=6.3e-09 Score=105.92 Aligned_cols=135 Identities=19% Similarity=0.357 Sum_probs=85.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc---cc----cccccEEE------Ee--cCceeEEEEcCCCC---ch----
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN---VP----EVRGPITI------VS--GKQRRLQFVECPND---IN---- 130 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---v~----~~~G~iti------~~--~~~~rl~fIDtPGd---l~---- 130 (519)
-...|+|+|.+|+|||||+|+|++..-... .. .....+.+ .. +...++++|||||- +.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 357899999999999999999998631100 00 01111111 11 22357999999991 10
Q ss_pred --hHH-----------HH---------h--hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH
Q 010060 131 --GMI-----------DC---------A--KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 131 --sml-----------d~---------a--k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k 185 (519)
.++ .. . ..+|++|++++++ .++.....+++..+.. ++| +|+|+||+|++.. .
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~l~~-~ 159 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKADTLTP-E 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCCcCCH-H
Confidence 011 00 0 1478999999987 4777777889998875 777 5579999999853 3
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+...++.+.+.+.. .+.++|+++.
T Consensus 160 e~~~~k~~i~~~l~~---~~i~~~~~~~ 184 (276)
T cd01850 160 ELKEFKQRIMEDIEE---HNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHHHH---cCCceECCCC
Confidence 444555555444321 3577877653
No 253
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.99 E-value=1.4e-09 Score=94.83 Aligned_cols=103 Identities=29% Similarity=0.339 Sum_probs=62.0
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc-Ccccc-c-cccEE----EEecCceeEEEEcCCCCc--hhH-HHHhhccCEEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK-HNVPE-V-RGPIT----IVSGKQRRLQFVECPNDI--NGM-IDCAKIADLALLL 145 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~-~-~G~it----i~~~~~~rl~fIDtPGdl--~sm-ld~ak~ADlVLLV 145 (519)
.|+|+|.+|+||||||++|++.... ..... . ...+. ........+.|+|++|.- ... -..+..+|++|||
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 4899999999999999999987533 11111 1 11111 122344568999999862 221 1237899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh-----cCCCeEEEEEEccC
Q 010060 146 IDGSYGFEMET-FEFLNLMQN-----HGLPRVMGVLTHLD 179 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~-----~GiP~VI~VlNKlD 179 (519)
+|++.....+. .+++..+.. ..+| +|+|.||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99986432221 233333332 3466 667899998
No 254
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.99 E-value=1.8e-08 Score=99.45 Aligned_cols=140 Identities=18% Similarity=0.176 Sum_probs=81.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCccccccccEE--E-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
..|+|||.++||||+|+++++... ......++...++ + +.+....+.||||+|. +..+.. ....+|++|||+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 478999999999999999999752 2221222211221 1 2334567899999995 444333 4689999999999
Q ss_pred CCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHH--------HHHHhhhhhccCCceEEEEeccc
Q 010060 148 GSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQ--------RLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 148 as~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk--------~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
.+..-.-+.. .+...+.. .++| +|+|.||+|+..+...+..+.+ .-... +..-....++|.+||++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~-~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV-LAKQVGAVSYVECSSRS 159 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHH-HHHHcCCCEEEEcCCCc
Confidence 9864222111 12222222 4566 5568999999653222211100 00001 11112335899999987
Q ss_pred C
Q 010060 216 H 216 (519)
Q Consensus 216 g 216 (519)
+
T Consensus 160 ~ 160 (222)
T cd04173 160 S 160 (222)
T ss_pred C
Confidence 6
No 255
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.98 E-value=6.1e-09 Score=101.07 Aligned_cols=143 Identities=10% Similarity=0.139 Sum_probs=86.0
Q ss_pred ECCCCCChHHHHHHHHhcccc-Ccccccc---ccEEEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC
Q 010060 80 QGPPQVGKSLLIKSLIKHYTK-HNVPEVR---GPITIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG 151 (519)
Q Consensus 80 VG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~---G~iti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g 151 (519)
||.++||||||+++++..... ....++. ...++. ......+.||||+|. +..+. ...+.||++|+|+|++..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999854211 1111110 011111 234578999999995 44444 457899999999999865
Q ss_pred CcccHH-HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHH
Q 010060 152 FEMETF-EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLA 228 (519)
Q Consensus 152 ~e~et~-e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~Ll 228 (519)
...+.. ..+..+.. .++| +|+|.||+|+.... ...+.. .+.. .....+|.+||++| .++..+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~-v~~~~~-~~~~------~~~~~~~e~SAk~~-----~~v~~~F 146 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRK-VKAKSI-TFHR------KKNLQYYDISAKSN-----YNFEKPF 146 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-EEEEEECccccccc-CCHHHH-HHHH------HcCCEEEEEeCCCC-----CCHHHHH
Confidence 432221 23333332 3666 55689999985321 111111 1111 13568999999977 5677777
Q ss_pred HHHHhhcC
Q 010060 229 RFISVMKF 236 (519)
Q Consensus 229 R~I~~~~~ 236 (519)
..|.....
T Consensus 147 ~~l~~~i~ 154 (200)
T smart00176 147 LWLARKLI 154 (200)
T ss_pred HHHHHHHH
Confidence 77665554
No 256
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.98 E-value=7.8e-09 Score=99.75 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=84.0
Q ss_pred eEEEEECCCCCChHHHHH-HHHhcc------ccCcccccc--ccEE-----------EEecCceeEEEEcCCCCchhHH-
Q 010060 75 FVVVVQGPPQVGKSLLIK-SLIKHY------TKHNVPEVR--GPIT-----------IVSGKQRRLQFVECPNDINGMI- 133 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn-~Ll~~~------Tr~~v~~~~--G~it-----------i~~~~~~rl~fIDtPGdl~sml- 133 (519)
..|+++|.++||||||+. .+.... .....+++. ..+. .+.+....+.+|||+|.-..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~~~ 82 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKDRR 82 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhhhc
Confidence 579999999999999995 554321 111111110 0011 1234467899999999643322
Q ss_pred HHhhccCEEEEEEeCCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCH------------------HH-HHHH
Q 010060 134 DCAKIADLALLLIDGSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDV------------------KK-LRKT 190 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~------------------k~-l~~~ 190 (519)
-....||++|||+|.+....-+.. ..+..++. .++| +|+|.||+|+.... .. ..+.
T Consensus 83 ~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e 161 (195)
T cd01873 83 FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPET 161 (195)
T ss_pred ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhcccccccccccCCccCHHH
Confidence 246799999999999754322211 13333332 3556 56789999986310 00 0111
Q ss_pred HHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 191 KQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 191 kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
.+.+.+.+ +.++|.+||++| .++.++...++
T Consensus 162 ~~~~a~~~------~~~~~E~SAkt~-----~~V~e~F~~~~ 192 (195)
T cd01873 162 GRAVAKEL------GIPYYETSVVTQ-----FGVKDVFDNAI 192 (195)
T ss_pred HHHHHHHh------CCEEEEcCCCCC-----CCHHHHHHHHH
Confidence 11222211 458999999987 46666665554
No 257
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.94 E-value=2.2e-08 Score=100.61 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=70.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcccccccc---EEE--EecCceeEEEEcCCCCchh---------HHH--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP---ITI--VSGKQRRLQFVECPNDING---------MID-- 134 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~---iti--~~~~~~rl~fIDtPGdl~s---------mld-- 134 (519)
...+.+|+|+|.+|+|||||+|+|++.... .+....+. ++. ....+..+.||||||-... .+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 567799999999999999999999997321 11111110 111 1234678999999993211 122
Q ss_pred --Hh--hccCEEEEEEeCC-CCCcccHHHHHHHHHh-cCC---CeEEEEEEccCCCCC
Q 010060 135 --CA--KIADLALLLIDGS-YGFEMETFEFLNLMQN-HGL---PRVMGVLTHLDKFKD 183 (519)
Q Consensus 135 --~a--k~ADlVLLVVDas-~g~e~et~e~L~~L~~-~Gi---P~VI~VlNKlDl~~~ 183 (519)
.+ ...|++|+|...+ ..+......++..+.. .|. .++++|+||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 22 2578898887554 2444455566666654 342 357789999998743
No 258
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.94 E-value=1.3e-08 Score=92.87 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=86.4
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc-cccc---cccEEEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEe
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEV---RGPITIV-SGKQRRLQFVECPND--INGMID-CAKIADLALLLID 147 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~---~G~iti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVD 147 (519)
.|+|+|.++||||||+++|.+...... .... ....++. ......+.++|++|. +..+.. ....+|++|+|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 489999999999999999998632211 1111 0111121 234567999999985 334443 4688999999999
Q ss_pred CCCCCcccH-HHHHHHHHh-cC-CCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 148 GSYGFEMET-FEFLNLMQN-HG-LPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~-~G-iP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
.+..-.-+. ..++..+.. .. -+.+++|.||.|+...... ..+.. .+... . +.++|.+||+.+ ..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~-~~~~~-----~-~~~~~e~Sa~~~-----~~ 148 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQ-EFAKE-----L-GVPYFEVSAKNG-----EN 148 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHH-HHHHH-----T-TSEEEEEBTTTT-----TT
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHH-HHHHH-----h-CCEEEEEECCCC-----CC
Confidence 874321111 134444432 22 2457778999998741111 11222 22111 1 389999999866 56
Q ss_pred HHHHHHHHHh
Q 010060 224 IRNLARFISV 233 (519)
Q Consensus 224 i~~LlR~I~~ 233 (519)
+.++...+..
T Consensus 149 v~~~f~~~i~ 158 (162)
T PF00071_consen 149 VKEIFQELIR 158 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 259
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.92 E-value=2.8e-08 Score=93.02 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=91.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~ 150 (519)
..+|.++|+.|+||||++++|.+..+...-++..-.++....+..++.++|..|+ +.+.+. +...+|.+|||+|++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD 95 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD 95 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch
Confidence 3789999999999999999999986433222222233344567889999999996 666775 5788999999999986
Q ss_pred CCccc-HH----HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHH--HHHhhhhhccCCceEEEEecccC
Q 010060 151 GFEME-TF----EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQR--LKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 151 g~e~e-t~----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~--Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..-++ +. ++|.--+..|.| ++++.||.|+... -....+... |...+ -....+++-+||.+|
T Consensus 96 ~~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~-l~~~~i~~~~~L~~l~---ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 96 RMRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGA-LSLEEISKALDLEELA---KSHHWRLVKCSAVTG 163 (185)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc-cCHHHHHHhhCHHHhc---cccCceEEEEecccc
Confidence 54433 22 233333346877 4558999999731 111222211 22111 124678999999988
No 260
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.90 E-value=6.1e-08 Score=92.30 Aligned_cols=136 Identities=20% Similarity=0.332 Sum_probs=93.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc---cCccccc--cc--cEEEE-------ecCceeEEEEcCCCC--chhHHHH-h
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT---KHNVPEV--RG--PITIV-------SGKQRRLQFVECPND--INGMIDC-A 136 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~~v~~~--~G--~iti~-------~~~~~rl~fIDtPGd--l~smld~-a 136 (519)
...|+|+|+.++||||+++.|..... ....+.. .+ +.|+. ......+.|++|||+ |.-||+. +
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~ 89 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILS 89 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHh
Confidence 46899999999999999999998742 1111111 11 23332 123468999999997 5568874 6
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHG-LPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~G-iP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
+.|+.+|+|||++.+......++++++.... +|.+ +++||.|+.... ...++.+.|+. +. ...++|.++|..
T Consensus 90 ~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~v-Va~NK~DL~~a~-ppe~i~e~l~~----~~-~~~~vi~~~a~e 162 (187)
T COG2229 90 RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVV-VAINKQDLFDAL-PPEKIREALKL----EL-LSVPVIEIDATE 162 (187)
T ss_pred CCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEE-EEeeccccCCCC-CHHHHHHHHHh----cc-CCCceeeeeccc
Confidence 8899999999999887766668888888777 6644 589999997521 12233333322 11 367899999874
Q ss_pred C
Q 010060 216 H 216 (519)
Q Consensus 216 g 216 (519)
+
T Consensus 163 ~ 163 (187)
T COG2229 163 G 163 (187)
T ss_pred c
Confidence 4
No 261
>PRK13768 GTPase; Provisional
Probab=98.89 E-value=9.9e-09 Score=103.13 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=69.3
Q ss_pred eeEEEEcCCCCch---------hHHHHhhc--cCEEEEEEeCCCCCcccHHHHHHHHH-----hcCCCeEEEEEEccCCC
Q 010060 118 RRLQFVECPNDIN---------GMIDCAKI--ADLALLLIDGSYGFEMETFEFLNLMQ-----NHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 118 ~rl~fIDtPGdl~---------smld~ak~--ADlVLLVVDas~g~e~et~e~L~~L~-----~~GiP~VI~VlNKlDl~ 181 (519)
..+.++||||... .+++.+.. ++++++|+|++.+....+++....+. ..++|.+ +|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i-~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQI-PVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEE-EEEEhHhhc
Confidence 3699999999522 13444444 89999999998766665554333322 4688855 589999998
Q ss_pred CCHHHHHHHHHHHHH------h-----------------hhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhc
Q 010060 182 KDVKKLRKTKQRLKH------R-----------------FWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 182 ~~~k~l~~~kk~Lk~------~-----------------f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
+.. ......+.+.. . ....+....++|++|++++ ..+..+...|....
T Consensus 176 ~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~-----~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEE-ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG-----EGFDELYAAIQEVF 246 (253)
T ss_pred Cch-hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC-----cCHHHHHHHHHHHc
Confidence 643 22333332221 0 0112234568999999865 67777777775543
No 262
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.89 E-value=5e-08 Score=94.54 Aligned_cols=138 Identities=14% Similarity=0.239 Sum_probs=79.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHH-hccccCccccccc---cEEE-EecCceeEEEEcCCCC--chhHHH-HhhccCEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLI-KHYTKHNVPEVRG---PITI-VSGKQRRLQFVECPND--INGMID-CAKIADLA 142 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll-~~~Tr~~v~~~~G---~iti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlV 142 (519)
..+...|+++|++|||||||+++++ +.+......++.- ..++ .......+.++||+|. +..+.. ....+|.+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 3556899999999999999997554 4332211111110 1111 1234568899999995 333333 45689999
Q ss_pred EEEEeCCCCCcccHH-HHHHHHH--hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 143 LLLIDGSYGFEMETF-EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 143 LLVVDas~g~e~et~-e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|+|+|.+........ ..+..+. ...+| +++|.||+|+.... ...+... +.. ..+..+|.+||++|.
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~-~~~~~~~-~~~------~~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQ-VKARQIT-FHR------KKNLQYYDISAKSNY 154 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCcccc-CCHHHHH-HHH------HcCCEEEEEeCCCCC
Confidence 999999754332221 2222222 13566 55689999986321 1111111 111 124678999999873
No 263
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.86 E-value=4e-08 Score=98.28 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=50.4
Q ss_pred ceeEEEEcCCCCch---------------h-HHHHhh-ccCEEEEEEeCCCCCcccH-HHHHHHHHhcCCCeEEEEEEcc
Q 010060 117 QRRLQFVECPNDIN---------------G-MIDCAK-IADLALLLIDGSYGFEMET-FEFLNLMQNHGLPRVMGVLTHL 178 (519)
Q Consensus 117 ~~rl~fIDtPGdl~---------------s-mld~ak-~ADlVLLVVDas~g~e~et-~e~L~~L~~~GiP~VI~VlNKl 178 (519)
-..++|||+||-.. . +..+++ ..+++|+|+||+.++..+. .++...+...+.| +|+|+||+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r-ti~ViTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGER-TIGVITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc-EEEEEECC
Confidence 35799999999531 1 223445 5679999999998887766 5888888888887 55699999
Q ss_pred CCCCCH
Q 010060 179 DKFKDV 184 (519)
Q Consensus 179 Dl~~~~ 184 (519)
|.....
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 998643
No 264
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.85 E-value=2.4e-08 Score=105.45 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=89.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC-------ccccccccEEEEecCceeEEEEcCCCC----c--hhHHHH--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-------NVPEVRGPITIVSGKQRRLQFVECPND----I--NGMIDC-- 135 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-------~v~~~~G~iti~~~~~~rl~fIDtPGd----l--~smld~-- 135 (519)
+..|+.|||+|.+|+|||||||+|.+-.... .+.+...+.......-..++|||.||. + ...++.
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3567999999999999999999998741110 011111111112233457999999983 2 234543
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC-C-----------CCHHHHHHHHHHHHHhhhhhcc
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK-F-----------KDVKKLRKTKQRLKHRFWTEIY 203 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl-~-----------~~~k~l~~~kk~Lk~~f~~e~~ 203 (519)
....|++|+|.+. .|......++..++..|.|.++ |-||+|. + ...+.++++.+.+.+.|.....
T Consensus 112 ~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyf-VRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv 188 (376)
T PF05049_consen 112 FYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYF-VRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGV 188 (376)
T ss_dssp GGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEE-EE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-
T ss_pred ccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEE-EEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCC
Confidence 5678987776554 4667777899999999999665 8999996 1 1122345555555555655556
Q ss_pred CCceEEEEecccCCcCChhHHHHHHHHHHhhc
Q 010060 204 DGAKLFYLSGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 204 ~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
...+||.||...-..| +...|...+....
T Consensus 189 ~~P~VFLVS~~dl~~y---DFp~L~~tL~~dL 217 (376)
T PF05049_consen 189 SEPQVFLVSSFDLSKY---DFPKLEETLEKDL 217 (376)
T ss_dssp SS--EEEB-TTTTTST---THHHHHHHHHHHS
T ss_pred CcCceEEEeCCCcccC---ChHHHHHHHHHHh
Confidence 7789999998765444 4555554444443
No 265
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.82 E-value=5.5e-08 Score=94.41 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc-Cccccc---------------cc-cEEEE-e-------------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEV---------------RG-PITIV-S------------------- 114 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~---------------~G-~iti~-~------------------- 114 (519)
..+++|+|+|++|+|||||+++|+..... ..+..+ .| .+... .
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 45789999999999999999999976321 010000 00 00000 0
Q ss_pred cCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH-HHHHHHHHH
Q 010060 115 GKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV-KKLRKTKQR 193 (519)
Q Consensus 115 ~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~-k~l~~~kk~ 193 (519)
.....+++|||.|.+....+.....++.+.|+|+..+... .+......+.|.+ +|+||+|+.... ..+.+..+.
T Consensus 100 ~~~~d~IiIEt~G~l~~~~~~~~~~~~~i~Vvd~~~~d~~----~~~~~~~~~~a~i-iv~NK~Dl~~~~~~~~~~~~~~ 174 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEGDDK----PLKYPGMFKEADL-IVINKADLAEAVGFDVEKMKAD 174 (207)
T ss_pred cCCCCEEEEecCCCcCCCcccccccCeEEEEEecCcccch----hhhhHhHHhhCCE-EEEEHHHccccchhhHHHHHHH
Confidence 0123567777777433222222234555667777643321 1111222355655 589999997532 223344444
Q ss_pred HHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 194 LKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 194 Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+++ ..+..++|++||+++ .++..++..+..
T Consensus 175 l~~-----~~~~~~i~~~Sa~~g-----~gv~~l~~~i~~ 204 (207)
T TIGR00073 175 AKK-----INPEAEIILMSLKTG-----EGLDEWLEFLEG 204 (207)
T ss_pred HHH-----hCCCCCEEEEECCCC-----CCHHHHHHHHHH
Confidence 433 235689999999977 677777766654
No 266
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1e-07 Score=91.58 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=98.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc----cEE-EEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PIT-IVSGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~it-i~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
..|+++|-.+||||+||++.+...-..+....-| .-| .+.+...++++|||.|. |.+++. .++.|.++|+|.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVy 102 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 102 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEE
Confidence 6799999999999999999998631111111001 011 12345789999999995 777654 578999999999
Q ss_pred eCCCC--CcccHHHHHH-HHHhcCC--CeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYG--FEMETFEFLN-LMQNHGL--PRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g--~e~et~e~L~-~L~~~Gi--P~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|.+.. |+. +...|+ .....|- +.|++|-||.||..+.+...+-.+...+.+ ++.++.+||+.|
T Consensus 103 Dit~~~Sfe~-t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel------~a~f~etsak~g----- 170 (221)
T KOG0094|consen 103 DITDRNSFEN-TSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL------NAEFIETSAKAG----- 170 (221)
T ss_pred eccccchHHH-HHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh------CcEEEEecccCC-----
Confidence 99743 332 333444 4444554 466778899999964322222111111111 457788999987
Q ss_pred hHHHHHHHHHHhhcCCC
Q 010060 222 REIRNLARFISVMKFPP 238 (519)
Q Consensus 222 ~ei~~LlR~I~~~~~r~ 238 (519)
..+..|.+.|+...+..
T Consensus 171 ~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 171 ENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCHHHHHHHHHHhccCc
Confidence 57778888898887765
No 267
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.3e-08 Score=111.55 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=83.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc-------cC-------ccc-cc------cccEEEEe----cCceeEEEEcCCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT-------KH-------NVP-EV------RGPITIVS----GKQRRLQFVECPND 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T-------r~-------~v~-~~------~G~iti~~----~~~~rl~fIDtPGd 128 (519)
-++|+++||-.+|||+|+..|+..+- .. ... .. ..|+|++. ++.+-+.++||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 46899999999999999999998731 00 000 01 23566653 34566889999998
Q ss_pred ch---hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 129 IN---GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 129 l~---smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
++ .+...+..+|.|++|||+.+|+...+..++..+-...+|-+ +|+||+|++
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~-vviNKiDRL 262 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIV-VVINKVDRL 262 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEE-EEEehhHHH
Confidence 55 37778899999999999999999999999988877788854 589999974
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.81 E-value=1.1e-07 Score=101.74 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC------ccccccccEEEEe---------------------cCceeEEEEcCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH------NVPEVRGPITIVS---------------------GKQRRLQFVECP 126 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v~~~~G~iti~~---------------------~~~~rl~fIDtP 126 (519)
+..|+|||.||+|||||+|+|++..... ++....|.+.+.. .....++|+|+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 4689999999999999999999863210 0001112111100 112468899999
Q ss_pred CC---------ch-hHHHHhhccCEEEEEEeCC
Q 010060 127 ND---------IN-GMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 127 Gd---------l~-smld~ak~ADlVLLVVDas 149 (519)
|- +. .+++.++.||++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 93 22 4788899999999999996
No 269
>PLN00023 GTP-binding protein; Provisional
Probab=98.78 E-value=1.3e-07 Score=98.19 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=68.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc-cCccccccccE--EEEe---------------cCceeEEEEcCCCC--chhHH
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPI--TIVS---------------GKQRRLQFVECPND--INGMI 133 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~i--ti~~---------------~~~~rl~fIDtPGd--l~sml 133 (519)
...|+|+|..+||||||+++|+...- .....++...+ ..+. .....+.||||+|. +..+.
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~ 100 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCR 100 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhh
Confidence 47899999999999999999997521 11111110000 1111 12356899999995 55555
Q ss_pred H-HhhccCEEEEEEeCCCCCcccHH-HHHHHHHhc---------------CCCeEEEEEEccCCCC
Q 010060 134 D-CAKIADLALLLIDGSYGFEMETF-EFLNLMQNH---------------GLPRVMGVLTHLDKFK 182 (519)
Q Consensus 134 d-~ak~ADlVLLVVDas~g~e~et~-e~L~~L~~~---------------GiP~VI~VlNKlDl~~ 182 (519)
. .++.||++|+|+|.+..-.-+.. .++..+... .+| +|+|.||+|+..
T Consensus 101 ~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL~~ 165 (334)
T PLN00023 101 SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADIAP 165 (334)
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECccccc
Confidence 4 47899999999999753221111 344444432 244 667999999964
No 270
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.78 E-value=2.6e-07 Score=89.95 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=84.5
Q ss_pred EEEEECCCCCChHHHHHHHHhcc-ccCccccccccEE--EEe-------cCceeEEEEcCCCC--chhHHH-HhhccCEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPIT--IVS-------GKQRRLQFVECPND--INGMID-CAKIADLA 142 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~it--i~~-------~~~~rl~fIDtPGd--l~smld-~ak~ADlV 142 (519)
.|+++|.++||||||+++++... ......++...+. .+. .....+.+|||+|. +..+.. ..+.||++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~i 81 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGI 81 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEE
Confidence 68999999999999999999863 2111111111111 111 13457899999995 555443 56889999
Q ss_pred EEEEeCCCCCcccH-----HHHHHHH------------------HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 010060 143 LLLIDGSYGFEMET-----FEFLNLM------------------QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFW 199 (519)
Q Consensus 143 LLVVDas~g~e~et-----~e~L~~L------------------~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~ 199 (519)
|+|+|.+..-.-+. .++++.. ...++| +|+|.||+|+..... ...........++
T Consensus 82 IlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~~r~-~~~~~~~~~~~~i 159 (202)
T cd04102 82 ILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEKE-SSGNLVLTARGFV 159 (202)
T ss_pred EEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchhhcc-cchHHHhhHhhhH
Confidence 99999986532221 1232211 012456 667999999974211 1111000111111
Q ss_pred hhccCCceEEEEecccCCc--CChhHHHHHHHHHHhh
Q 010060 200 TEIYDGAKLFYLSGLIHGK--YSKREIRNLARFISVM 234 (519)
Q Consensus 200 ~e~~~~~kVf~lSAl~g~~--Y~~~ei~~LlR~I~~~ 234 (519)
.+- -+++-+.+++...+. ........|.+|+-..
T Consensus 160 a~~-~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~ 195 (202)
T cd04102 160 AEQ-GNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKV 195 (202)
T ss_pred HHh-cCCceEEEecCCcccccCCCccHHHHHHHHHHH
Confidence 111 245555667664431 1223555666776543
No 271
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.3e-07 Score=91.74 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=87.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-ccCccccc----cccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEV----RGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~----~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
-..|++||-++||||.|+-++.... +...+.++ .+..-...+.+..+++|||.|. +..+. .+++.|+.++||
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv 91 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV 91 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEE
Confidence 3689999999999999999888763 21112211 1111112456778999999996 55644 467899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 146 IDGSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
+|.+....=+. ...+..+..+ ++| +|+|-||+|+......-.+.-+.|...+ +.++|.+||++|
T Consensus 92 yDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R~V~~e~ge~lA~e~------G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 92 YDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKRQVSKERGEALAREY------GIKFFETSAKTN 159 (207)
T ss_pred EEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccccccHHHHHHHHHHh------CCeEEEccccCC
Confidence 99975322111 1244444433 566 4568999999753222222233333322 899999999988
No 272
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.74 E-value=2e-08 Score=100.84 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=87.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccc----cc---------------------cccEEEEe---------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----EV---------------------RGPITIVS--------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----~~---------------------~G~iti~~--------- 114 (519)
.+...+|+|-|+||+|||||+++|...+... .+. +| ...+.+-+
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 3456899999999999999999999863111 000 00 01122211
Q ss_pred -------------cCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHH--HHHHHHHhcCCCeEEEEEEccC
Q 010060 115 -------------GKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETF--EFLNLMQNHGLPRVMGVLTHLD 179 (519)
Q Consensus 115 -------------~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~--e~L~~L~~~GiP~VI~VlNKlD 179 (519)
..+..++||+|.|-=++=++.+..||.+++|+-+..|-+.|.. -++.+. -+ +|+||.|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------Di-~vVNKaD 178 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------DI-FVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SE-EEEE--S
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------cE-EEEeCCC
Confidence 1246799999998777778889999999999998877766654 466552 35 4899999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccC--CceEEEEecccCCcCChhHHHHHHHHH
Q 010060 180 KFKDVKKLRKTKQRLKHRFWTEIYD--GAKLFYLSGLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 180 l~~~~k~l~~~kk~Lk~~f~~e~~~--~~kVf~lSAl~g~~Y~~~ei~~LlR~I 231 (519)
+........++...|. +. ..... ..+|+.+||.++ .++..|...|
T Consensus 179 ~~gA~~~~~~l~~~l~-l~-~~~~~~W~ppV~~tsA~~~-----~Gi~eL~~~i 225 (266)
T PF03308_consen 179 RPGADRTVRDLRSMLH-LL-REREDGWRPPVLKTSALEG-----EGIDELWEAI 225 (266)
T ss_dssp HHHHHHHHHHHHHHHH-HC-STSCTSB--EEEEEBTTTT-----BSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-hc-cccccCCCCCEEEEEeCCC-----CCHHHHHHHH
Confidence 6532222333333332 11 11111 258999999976 4455554333
No 273
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1e-07 Score=99.13 Aligned_cols=219 Identities=21% Similarity=0.263 Sum_probs=132.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-----ccCccc------------------cc-----cccEEEE----------ec
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-----TKHNVP------------------EV-----RGPITIV----------SG 115 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-----Tr~~v~------------------~~-----~G~iti~----------~~ 115 (519)
..+|||+|-.++|||||+..|++.. .|..+. ++ +|.+.-+ ..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4789999999999999999998751 011110 00 1111000 11
Q ss_pred CceeEEEEcCCCCc--h-hHHHHh--hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHH
Q 010060 116 KQRRLQFVECPNDI--N-GMIDCA--KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKT 190 (519)
Q Consensus 116 ~~~rl~fIDtPGdl--~-smld~a--k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~ 190 (519)
...-++|||..|+- . .++-++ -..|.++||++|..|+..-+.|+|-++.+..+|..| +++|+|+... ..+++.
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFv-lvtK~Dl~~~-~~~~~t 324 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFV-LVTKMDLVDR-QGLKKT 324 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEE-EEEeeccccc-hhHHHH
Confidence 13458999999972 2 244443 357999999999999999999999999999999665 7999999964 345555
Q ss_pred HHHHHHhhhh---------------------h--ccCCceEEEEecccCCcCChhHHHHHH-HHHHhhcCCCC-----cc
Q 010060 191 KQRLKHRFWT---------------------E--IYDGAKLFYLSGLIHGKYSKREIRNLA-RFISVMKFPPL-----SW 241 (519)
Q Consensus 191 kk~Lk~~f~~---------------------e--~~~~~kVf~lSAl~g~~Y~~~ei~~Ll-R~I~~~~~r~~-----~w 241 (519)
.+.|...+.. + ...-.|||.+|..+| +..+|+ .|+....+-.- .+
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG------egl~ll~~fLn~Lsp~~~~~e~~~L 398 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG------EGLRLLRTFLNCLSPAGTAEERIQL 398 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc------cchhHHHHHHhhcCCcCChHHHHHH
Confidence 5555443321 1 123468999999877 334444 34433222110 00
Q ss_pred ccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCe-----EEEeeecCCCCCCC
Q 010060 242 RTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDY-----SLAGVTGLADPCPL 311 (519)
Q Consensus 242 R~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf-----~I~~I~~l~dP~pl 311 (519)
-......-+|.+.-+++ -.-+|-|.+..+.|..|+-+.|-...|- .+-+|..--.||..
T Consensus 399 ~q~~~eFqvdEiy~Vp~-----------VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrv 462 (591)
T KOG1143|consen 399 VQLPAEFQVDEIYNVPH-----------VGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRV 462 (591)
T ss_pred hcCcceeeHhHeecCCc-----------ccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceee
Confidence 00112233344433321 1235678888888888888877555443 34555555556653
No 274
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.71 E-value=4.5e-08 Score=104.93 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCCccCCcC-CCCCCeEEEEECCCCCChHHHHHHHHhcccc-Cccc-cccc-cEEEEecCceeEEEEcCCC
Q 010060 52 AVEKEQRRLHIPTIDRSY-GEPPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVP-EVRG-PITIVSGKQRRLQFVECPN 127 (519)
Q Consensus 52 ~~~r~~Kr~~v~~~~R~~-~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~-~~~G-~iti~~~~~~rl~fIDtPG 127 (519)
....+|.|+|.. |.+ -+++.+.++|||.||||||||+|.++..... ++.. +..+ -+-.+...-.+++++||||
T Consensus 148 l~yLeqVrqhl~---rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPG 224 (620)
T KOG1490|consen 148 LEYLEQVRQHLS---RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPG 224 (620)
T ss_pred HHHHHHHHHHHh---cCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCcc
Confidence 344556666652 332 3677889999999999999999988875211 0000 0000 0002345567999999999
Q ss_pred Cch---------hHHH---HhhccCEEEEEEeCC--CCCcccHH-HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHH
Q 010060 128 DIN---------GMID---CAKIADLALLLIDGS--YGFEMETF-EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKT 190 (519)
Q Consensus 128 dl~---------smld---~ak~ADlVLLVVDas--~g~e~et~-e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~ 190 (519)
.+. .|.. .+..--.||+++|.+ .|+..+.+ .+...++. .+.| +|+|+||+|.... +.+.+-
T Consensus 225 ILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~D~m~~-edL~~~ 302 (620)
T KOG1490|consen 225 ILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKIDAMRP-EDLDQK 302 (620)
T ss_pred ccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecccccCc-cccCHH
Confidence 432 1221 223334589999987 34443322 34444443 2556 4568999999864 334444
Q ss_pred HHHHHHhhhhhccCCceEEEEecccC
Q 010060 191 KQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 191 kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
.+.|.+.+.. -...+|+..|+++.
T Consensus 303 ~~~ll~~~~~--~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 303 NQELLQTIID--DGNVKVVQTSCVQE 326 (620)
T ss_pred HHHHHHHHHh--ccCceEEEecccch
Confidence 4334333321 13478999998864
No 275
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.71 E-value=4.1e-07 Score=94.70 Aligned_cols=220 Identities=18% Similarity=0.259 Sum_probs=135.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc-------cc-------Cccc---------ccc-----cc-------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY-------TK-------HNVP---------EVR-----GP------------- 109 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~-------Tr-------~~v~---------~~~-----G~------------- 109 (519)
+.-..+|+|||..++|||||+..|+... .| +.+. ++. |.
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3445799999999999999998887531 00 0000 010 10
Q ss_pred -EEEEecCceeEEEEcCCCCch---hHHH--HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 110 -ITIVSGKQRRLQFVECPNDIN---GMID--CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 110 -iti~~~~~~rl~fIDtPGdl~---smld--~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
+.+......-++|||..|+-. .++= .-...|+.+|+|-++.|+---|.|+|.+..+..+| |++|++|+|...
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMCP- 287 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMCP- 287 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccCc-
Confidence 011111234589999999622 1111 13568999999999999988899999999999999 456899999985
Q ss_pred HHHHHHHHHHHHHhhhhh---------------------cc--CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCc
Q 010060 184 VKKLRKTKQRLKHRFWTE---------------------IY--DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLS 240 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e---------------------~~--~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~ 240 (519)
...+.+..+.|...+.+. |+ .-.++|.+|-++| +.+.-|..|+.-..+| ..
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG-----~NL~LLkmFLNlls~R-~~ 361 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG-----TNLPLLKMFLNLLSLR-RQ 361 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC-----CChHHHHHHHhhcCcc-cc
Confidence 456777777666544331 11 1357888888777 2333333444333333 33
Q ss_pred cccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEE--ecCCCeE---EEeeecCCCCC
Q 010060 241 WRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHI--AGVGDYS---LAGVTGLADPC 309 (519)
Q Consensus 241 wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhI--pG~Gdf~---I~~I~~l~dP~ 309 (519)
++.+.|- .-+|.+.+++. -| .++.|++-.+.++.|+...+ -..|+|. |++|..--.|+
T Consensus 362 ~~E~~PAeFQIDD~Y~VpG----------VG-TvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV 425 (641)
T KOG0463|consen 362 LNENDPAEFQIDDIYWVPG----------VG-TVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPV 425 (641)
T ss_pred cccCCCcceeecceEecCC----------cc-eEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccc
Confidence 4455544 45566666632 23 45677777666788886655 2367775 45554433444
No 276
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.6e-07 Score=104.55 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=81.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC------cc-------ccccccEEEEe------cCceeEEEEcCCCC--chh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH------NV-------PEVRGPITIVS------GKQRRLQFVECPND--ING 131 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v-------~~~~G~iti~~------~~~~rl~fIDtPGd--l~s 131 (519)
.-++||++.|.++|||||+.+|+.....- .+ .+..-+||..+ .+...+.|||+||+ |.+
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 35899999999999999999999863100 00 00112355432 25678999999996 555
Q ss_pred -HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC
Q 010060 132 -MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK 180 (519)
Q Consensus 132 -mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl 180 (519)
+-.++..+|.++++||+.+|+..+|..+|+.+-..|+..+ +|+||+|.
T Consensus 88 evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~-lvinkidr 136 (887)
T KOG0467|consen 88 EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPI-LVINKIDR 136 (887)
T ss_pred hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceE-EEEehhhh
Confidence 4556788999999999999999999999997766787755 58999994
No 277
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.70 E-value=3.6e-07 Score=89.23 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=68.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcc---ccccccEEE--EecCceeEEEEcCCCCch----------hHHHH----
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNV---PEVRGPITI--VSGKQRRLQFVECPNDIN----------GMIDC---- 135 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v---~~~~G~iti--~~~~~~rl~fIDtPGdl~----------smld~---- 135 (519)
++|+|+|.+|+||||++|.|++...-..- ......+.. ....++.+++|||||-.. .+.++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 47999999999999999999997421111 000011111 134578999999999311 12222
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHh-cC---CCeEEEEEEccCCCCCH
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQN-HG---LPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~-~G---iP~VI~VlNKlDl~~~~ 184 (519)
....+++|||+... .+.......+..+.. .| +.++|+|+|+.|...+.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 34589999999998 777766666665553 23 34788899999987643
No 278
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.69 E-value=2.8e-07 Score=97.17 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=51.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC------ccccccccEEEEec--------------CceeEEEEcCCCCc-----
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH------NVPEVRGPITIVSG--------------KQRRLQFVECPNDI----- 129 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v~~~~G~iti~~~--------------~~~rl~fIDtPGdl----- 129 (519)
..|+|||.||+|||||+|+|++..... ++....|.+.+... ...++.|+|+||-+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 579999999999999999999864110 00101122222110 01369999999932
Q ss_pred -----hhHHHHhhccCEEEEEEeCC
Q 010060 130 -----NGMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 130 -----~smld~ak~ADlVLLVVDas 149 (519)
+.++..++.||++|+|||+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 13777889999999999995
No 279
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.68 E-value=4.5e-07 Score=93.30 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=85.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC-------------c------------ccc---ccccEEEE---------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-------------N------------VPE---VRGPITIV--------- 113 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-------------~------------v~~---~~G~iti~--------- 113 (519)
.+++.+|+|+|++|+|||||++.|....... . ... ..+ +.+.
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 109 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPG-AFIRSMPTRGHLG 109 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCC-ceeeecCcccccc
Confidence 4567899999999999999999988742110 0 000 001 0010
Q ss_pred -------------ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC
Q 010060 114 -------------SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK 180 (519)
Q Consensus 114 -------------~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl 180 (519)
...+..++|+||||.-....+.+..+|.++++.+...+.+. ..+...+ .++|.+ +|+||+|+
T Consensus 110 ~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el--~~~~~~l--~~~~~i-vv~NK~Dl 184 (300)
T TIGR00750 110 GLSQATRELILLLDAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDL--QGIKAGL--MEIADI-YVVNKADG 184 (300)
T ss_pred chhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHH--HHHHHHH--hhhccE-EEEEcccc
Confidence 01256789999999766677888999999999765433221 1222222 356755 58999999
Q ss_pred CCCHHHHHHHHHHHH---HhhhhhccC-CceEEEEecccCCcCChhHHHHHHHHH
Q 010060 181 FKDVKKLRKTKQRLK---HRFWTEIYD-GAKLFYLSGLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 181 ~~~~k~l~~~kk~Lk---~~f~~e~~~-~~kVf~lSAl~g~~Y~~~ei~~LlR~I 231 (519)
..... .......+. ..+...... ..+++++||+++ .++..+...|
T Consensus 185 ~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g-----~Gi~~L~~~i 233 (300)
T TIGR00750 185 EGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVEG-----RGIDELWDAI 233 (300)
T ss_pred cchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccCC-----CCHHHHHHHH
Confidence 85322 111111111 111111111 136999999987 4455554443
No 280
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.4e-07 Score=87.77 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=94.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-ccCccccccccE-E--EEe-cCceeEEEEcCCCC--chhHHH-HhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI-T--IVS-GKQRRLQFVECPND--INGMID-CAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i-t--i~~-~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLV 145 (519)
...|+++|..+||||||+-+.+... ......++...+ | +.. .....+.+|||.|. ++++.. ..+.|+.+|+|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivv 84 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVV 84 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEE
Confidence 4689999999999999998888763 222223332211 1 111 22467889999995 555332 56899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHhcCCCeEEE--EEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEMET-FEFLNLMQNHGLPRVMG--VLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~~GiP~VI~--VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
.|.+..-.-+. ...+.-|+.+.-|.+++ |-||+|+....+ .+.+...... -.+..+|-+||+++
T Consensus 85 YDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe-------~~gll~~ETSAKTg----- 152 (200)
T KOG0092|consen 85 YDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAE-------SQGLLFFETSAKTG----- 152 (200)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHH-------hcCCEEEEEecccc-----
Confidence 99974211111 13444555555564444 679999985222 1222222111 15788999999988
Q ss_pred hHHHHHHHHHHhhcCC
Q 010060 222 REIRNLARFISVMKFP 237 (519)
Q Consensus 222 ~ei~~LlR~I~~~~~r 237 (519)
..+..+...|+...|.
T Consensus 153 ~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 153 ENVNEIFQAIAEKLPC 168 (200)
T ss_pred cCHHHHHHHHHHhccC
Confidence 5666677777766653
No 281
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.63 E-value=3.7e-07 Score=87.92 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=72.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccc-----cccccEEEEe-cCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-----EVRGPITIVS-GKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-----~~~G~iti~~-~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
..|+|+|++|||||||+++|++........ ...+ .+... .....+.+|||+|. +..++ .....++.++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPA-KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEE-EEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 789999999999999999999975332111 1111 11111 12556899999995 55555 455899999999
Q ss_pred EeCCC--CCcccHHHHHHHHHhc---CCCeEEEEEEccCCCCCH
Q 010060 146 IDGSY--GFEMETFEFLNLMQNH---GLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 146 VDas~--g~e~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~ 184 (519)
+|... .+.....+.+..+... ..| +++|.||+|+....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 99874 3333344555555543 355 66689999998643
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.63 E-value=3.1e-07 Score=94.88 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=68.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--ccccc-cccEEE-EecCceeEEEEcCCCCch-----h-HHHHhh----
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVPEV-RGPITI-VSGKQRRLQFVECPNDIN-----G-MIDCAK---- 137 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~~~-~G~iti-~~~~~~rl~fIDtPGdl~-----s-mld~ak---- 137 (519)
...++|+|+|.+|+|||||+|+|++..... ..... ..++++ ....+.++.+|||||-.. . .+..++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999863110 00000 001111 123567999999999432 1 233333
Q ss_pred --ccCEEEEEEeCC-CCCcccHHHHHHHHHhc-C---CCeEEEEEEccCCCC
Q 010060 138 --IADLALLLIDGS-YGFEMETFEFLNLMQNH-G---LPRVMGVLTHLDKFK 182 (519)
Q Consensus 138 --~ADlVLLVVDas-~g~e~et~e~L~~L~~~-G---iP~VI~VlNKlDl~~ 182 (519)
..|++|||...+ ..+......++..++.. | ...+|+|+||.|...
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 589999995432 23554545555555432 3 235677999999874
No 283
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.3e-07 Score=87.72 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=96.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc----cccc-------cccEEEEecCceeEEEEcCCCC--chhHHHH-hhccC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEV-------RGPITIVSGKQRRLQFVECPND--INGMIDC-AKIAD 140 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~-------~G~iti~~~~~~rl~fIDtPGd--l~smld~-ak~AD 140 (519)
..|.|+|+-|+|||||+-++-..+++.- +..+ .|.+ .-.+..+.|||.-|. +.++++. ...|.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i---~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI---EVCNAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce---eeccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 5789999999999999998887754321 1111 1211 223678999999985 7788875 57899
Q ss_pred EEEEEEeCCC--CCcccHHHHHHHH---HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc--cCCceEEEEec
Q 010060 141 LALLLIDGSY--GFEMETFEFLNLM---QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI--YDGAKLFYLSG 213 (519)
Q Consensus 141 lVLLVVDas~--g~e~et~e~L~~L---~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~--~~~~kVf~lSA 213 (519)
.+++||||+. .|+..+.++-..+ ..+|+|.++ .+||-|+... ....++...+.. .+. -...++.|+||
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~-lankqd~q~~-~~~~El~~~~~~---~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLV-LANKQDLQNA-MEAAELDGVFGL---AELIPRRDNPFQPVSA 169 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhh-hcchhhhhhh-hhHHHHHHHhhh---hhhcCCccCccccchh
Confidence 9999999975 3444433333332 247999765 6999998642 222333332221 122 24567899999
Q ss_pred ccCCcCChhHHHHHHHHHHhhcCCCC
Q 010060 214 LIHGKYSKREIRNLARFISVMKFPPL 239 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~~r~~ 239 (519)
++|.-. .+.+.-+.+.+.....||.
T Consensus 170 l~gegv-~egi~w~v~~~~kn~~rp~ 194 (197)
T KOG0076|consen 170 LTGEGV-KEGIEWLVKKLEKNVTRPP 194 (197)
T ss_pred hhcccH-HHHHHHHHHHHhhccCCCc
Confidence 988211 3445545455544433443
No 284
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.3e-07 Score=88.34 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=100.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.....|+++|+.++||||++..|-......+++++.-.+.-+..++.+++++|+.|. +...+. .....+.+|||||+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS 94 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDS 94 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeC
Confidence 345789999999999999998888765444555554455566778999999999996 445554 57899999999999
Q ss_pred CCC--CcccHHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc-cCCceEEEEecccCCcCChh
Q 010060 149 SYG--FEMETFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI-YDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 149 s~g--~e~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~-~~~~kVf~lSAl~g~~Y~~~ 222 (519)
+.. ++....++..++... +.| +++..||.|+...- ...++.+.|.- ..+ .....+..++|.+| +
T Consensus 95 ~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~al-s~~ei~~~L~l---~~l~~~~w~iq~~~a~~G-----~ 164 (181)
T KOG0070|consen 95 SDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGAL-SAAEITNKLGL---HSLRSRNWHIQSTCAISG-----E 164 (181)
T ss_pred CcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccC-CHHHHHhHhhh---hccCCCCcEEeecccccc-----c
Confidence 853 333233555555543 455 55679999986421 12233333221 111 13456778888877 5
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++.+-++.+...
T Consensus 165 GL~egl~wl~~~ 176 (181)
T KOG0070|consen 165 GLYEGLDWLSNN 176 (181)
T ss_pred cHHHHHHHHHHH
Confidence 666666655544
No 285
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.58 E-value=2.8e-07 Score=93.97 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=92.0
Q ss_pred CCCCCCeEEEEECCCCCChHHHHHHHHhccccCc--cc----cc----c-c----------------cEEEE--------
Q 010060 69 YGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--VP----EV----R-G----------------PITIV-------- 113 (519)
Q Consensus 69 ~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v~----~~----~-G----------------~iti~-------- 113 (519)
+..+.+.+|+|-|.||+|||||+..|...+.... |. ++ . | .+.+-
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 4467788999999999999999999998631110 00 00 0 0 11111
Q ss_pred --------------ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHH--HHHHHHHhcCCCeEEEEEEc
Q 010060 114 --------------SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETF--EFLNLMQNHGLPRVMGVLTH 177 (519)
Q Consensus 114 --------------~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~--e~L~~L~~~GiP~VI~VlNK 177 (519)
...+..+++|+|.|-=++=.+.+..||.+++|+=+..|-+-|.. -++.+. -+ +|+||
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di-~vINK 198 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DI-IVINK 198 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh------he-eeEec
Confidence 11245689999998767777888999999999887777665554 244432 24 48999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh--hhhccCCceEEEEecccC
Q 010060 178 LDKFKDVKKLRKTKQRLKHRF--WTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 178 lDl~~~~k~l~~~kk~Lk~~f--~~e~~~~~kVf~lSAl~g 216 (519)
.|+-.......++...|...- |.+-.-..+++-+||++|
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g 239 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEG 239 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccC
Confidence 996544444555555554321 333334568999999988
No 286
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.58 E-value=2.9e-07 Score=84.94 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=93.0
Q ss_pred eEEEEECCCCCChHHHHHHHHh-ccccCccccccccEEEEecCceeEEEEcCCCC--chhHHHH-hhccCEEEEEEeCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIK-HYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMIDC-AKIADLALLLIDGSY 150 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~-~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld~-ak~ADlVLLVVDas~ 150 (519)
..+.++|+.++|||||+|.+.. .+.+..+.+..-.+.-++...-.+.++|.||. +.+|++. +..+++++++|||++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad 100 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD 100 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC
Confidence 5688999999999999998876 56555544432223334455667889999996 7779974 689999999999986
Q ss_pred CC--cccHHHHHHHH---HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc-CCceEEEEecccCCcCChhHH
Q 010060 151 GF--EMETFEFLNLM---QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY-DGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 151 g~--e~et~e~L~~L---~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~-~~~kVf~lSAl~g~~Y~~~ei 224 (519)
+- +..-.|+-++| +-.|+|.. +.-||.|+...-.. ..+...+. + ..+. ...-.|.+|++. +..+
T Consensus 101 ~~k~~~sr~EL~~LL~k~~l~gip~L-VLGnK~d~~~AL~~-~~li~rmg--L-~sitdREvcC~siScke-----~~Ni 170 (186)
T KOG0075|consen 101 PDKLEASRSELHDLLDKPSLTGIPLL-VLGNKIDLPGALSK-IALIERMG--L-SSITDREVCCFSISCKE-----KVNI 170 (186)
T ss_pred cccchhhHHHHHHHhcchhhcCCcEE-EecccccCcccccH-HHHHHHhC--c-cccccceEEEEEEEEcC-----CccH
Confidence 32 22223444444 34688854 46899998642111 12222210 1 1111 234578999873 3555
Q ss_pred HHHHHHHH
Q 010060 225 RNLARFIS 232 (519)
Q Consensus 225 ~~LlR~I~ 232 (519)
..+..+|.
T Consensus 171 d~~~~Wli 178 (186)
T KOG0075|consen 171 DITLDWLI 178 (186)
T ss_pred HHHHHHHH
Confidence 55555544
No 287
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.57 E-value=1.6e-06 Score=86.37 Aligned_cols=137 Identities=12% Similarity=0.254 Sum_probs=76.1
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccc--cccEEE--E-ecCceeEEEEcCCCCchh--------HHHHhhccCEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEV--RGPITI--V-SGKQRRLQFVECPNDING--------MIDCAKIADLA 142 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~--~G~iti--~-~~~~~rl~fIDtPGdl~s--------mld~ak~ADlV 142 (519)
.|.++|+.++||||+.+.+...+........ .-.++. + ......+.+|||||...- .-...+.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 4789999999999999999987532211111 011111 1 233558999999996321 23356899999
Q ss_pred EEEEeCC-CCCcccHH---HHHHHHHh--cCCCeEEEEEEccCCCCCHHH---HHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 143 LLLIDGS-YGFEMETF---EFLNLMQN--HGLPRVMGVLTHLDKFKDVKK---LRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 143 LLVVDas-~g~e~et~---e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~---l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
|+|+|+. ..+...-. .++..+.. .++ .+.+.+.|+|++.+..+ ++...+.+.+.+....+....+|.+|-
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~-~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNI-KVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT--EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCC-eEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997 44443332 34444433 233 46668999999864322 233444444444322223467788884
No 288
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.57 E-value=4.6e-07 Score=86.43 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=88.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc-c---cCcccc--ccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY-T---KHNVPE--VRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~-T---r~~v~~--~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlV 142 (519)
..++.|.|+|-+|||||+|+|.++... . .++|.. ..--+ .+......+++|||.|. |.++ ....+.||.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev-~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV-QVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE-EEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 456899999999999999999999751 1 111110 00111 12234456889999995 5552 2345889999
Q ss_pred EEEEeCCC-----CCcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 143 LLLIDGSY-----GFEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 143 LLVVDas~-----g~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
+||.|.+. .++.+..|||..... ..+|.|| +-||+|+-..+...-.. +.. .-|..--+..+.|-+||+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVi-lGNKiD~~~~~~r~VS~-~~A--q~WC~s~gnipyfEtSAK 161 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVI-LGNKIDVDGGKSRQVSE-KKA--QTWCKSKGNIPYFETSAK 161 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEE-EcccccCCCCccceeeH-HHH--HHHHHhcCCceeEEeccc
Confidence 99999863 233445578776543 3588775 79999986532221111 111 125555578899999998
Q ss_pred cC
Q 010060 215 IH 216 (519)
Q Consensus 215 ~g 216 (519)
..
T Consensus 162 ~~ 163 (210)
T KOG0394|consen 162 EA 163 (210)
T ss_pred cc
Confidence 55
No 289
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=7.9e-07 Score=85.60 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=83.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCccccccccEEE----EecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPITI----VSGKQRRLQFVECPND--ING-MIDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~iti----~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVV 146 (519)
..|.|+|-.|||||.|+.++...+ +...+.++.--+++ ..++.-.+++|||.|+ |.+ +.+..+.|+.||||.
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vy 89 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVY 89 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEE
Confidence 679999999999999999988763 22222222111111 2456678999999997 666 667889999999999
Q ss_pred eCCCCCcccHHH-HHHHHH------hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCce-EEEEecccC
Q 010060 147 DGSYGFEMETFE-FLNLMQ------NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAK-LFYLSGLIH 216 (519)
Q Consensus 147 Das~g~e~et~e-~L~~L~------~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~k-Vf~lSAl~g 216 (519)
|.+. .+++. +-.++. ..++|.+ +|-||.|+........+..+.+... .+.+ ++.+||+.+
T Consensus 90 DiT~---~~SF~~v~~Wi~Ei~~~~~~~v~~l-LVGNK~Dl~~~~~v~~~~a~~fa~~------~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 90 DITK---QESFNNVKRWIQEIDRYASENVPKL-LVGNKCDLTEKRVVSTEEAQEFADE------LGIPIFLETSAKDS 157 (205)
T ss_pred Eccc---HHHhhhHHHHHHHhhhhccCCCCeE-EEeeccccHhheecCHHHHHHHHHh------cCCcceeecccCCc
Confidence 9974 23332 111222 2356655 5899999974322222222233222 2344 899999966
No 290
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.52 E-value=1.9e-07 Score=95.58 Aligned_cols=146 Identities=11% Similarity=0.222 Sum_probs=77.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc-cCccccccc----------------c-EEEEe------------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRG----------------P-ITIVS------------------ 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G----------------~-iti~~------------------ 114 (519)
+.....|.|+|+||+|||||++.|++... ...+..+.| + +.+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 45568999999999999999999988621 111111101 0 00000
Q ss_pred -cCceeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC-HHHHHHH
Q 010060 115 -GKQRRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD-VKKLRKT 190 (519)
Q Consensus 115 -~~~~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~-~k~l~~~ 190 (519)
.....+.||++.|.+. ...+.... .-+.|++..++.. ....+=.++ ..+.+ +|+||+|++.. ...+..+
T Consensus 181 ~~~~~d~liIEnvGnLvcPa~fdlge~--~~v~vlsV~eg~d-kplKyp~~f---~~ADI-VVLNKiDLl~~~~~dle~~ 253 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCPASFDLGEK--HKVAVLSVTEGED-KPLKYPHMF---AAASL-MLLNKVDLLPYLNFDVEKC 253 (290)
T ss_pred hhcCCcEEEEECCCCccCCCccchhhc--eeEEEEECccccc-cchhccchh---hcCcE-EEEEhHHcCcccHHHHHHH
Confidence 0122455555555421 11222222 2234555554422 111110111 23444 48999999852 2234455
Q ss_pred HHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 191 KQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 191 kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
.+.++. +.+.++||++||++| .++..+..+|..
T Consensus 254 ~~~lr~-----lnp~a~I~~vSA~tG-----eGld~L~~~L~~ 286 (290)
T PRK10463 254 IACARE-----VNPEIEIILISATSG-----EGMDQWLNWLET 286 (290)
T ss_pred HHHHHh-----hCCCCcEEEEECCCC-----CCHHHHHHHHHH
Confidence 544433 347899999999977 566777766654
No 291
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1e-06 Score=84.23 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=97.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc--ccCc--cccccccEEE--EecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY--TKHN--VPEVRGPITI--VSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~--Tr~~--v~~~~G~iti--~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
-..+.++|-.+||||.|+.+.+... +.+. +...-| .+. +..+.-++++|||.|. +.+ +-...+.|-.+||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg-~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFG-ARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeec-eeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 4678999999999999988877652 1111 111112 222 2345678999999996 566 4557899999999
Q ss_pred EEeCCCCCcccHH----HHHHHHHhcCCC--eEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 145 LIDGSYGFEMETF----EFLNLMQNHGLP--RVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 145 VVDas~g~e~et~----e~L~~L~~~GiP--~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|.|.+.. +++ ..|.-++.++.+ .+|++-||+|+.... .+.++=-..|..+ .+-.++-+||.++
T Consensus 85 Vydit~r---~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR----~Vs~EEGeaFA~e--hgLifmETSakt~-- 153 (216)
T KOG0098|consen 85 VYDITRR---ESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR----EVSKEEGEAFARE--HGLIFMETSAKTA-- 153 (216)
T ss_pred EEEccch---hhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc----cccHHHHHHHHHH--cCceeehhhhhhh--
Confidence 9998642 333 234444555545 466677999997532 2222211222222 4566678999876
Q ss_pred CChhHHHHHHHHHHhhcCCCCccc
Q 010060 219 YSKREIRNLARFISVMKFPPLSWR 242 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~r~~~wR 242 (519)
..+.++...++..+.+.+.|-
T Consensus 154 ---~~VEEaF~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 154 ---ENVEEAFINTAKEIYRKIQDG 174 (216)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhc
Confidence 677777777777766666553
No 292
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.51 E-value=9.6e-07 Score=98.52 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccc-cccEEE---E-ecCceeEEEEcCCCCch---------hHHH---
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEV-RGPITI---V-SGKQRRLQFVECPNDIN---------GMID--- 134 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~-~G~iti---~-~~~~~rl~fIDtPGdl~---------smld--- 134 (519)
.-+.+|+|+|.+|+|||||+|+|++...- .+... .+...+ . ...+..+.||||||-+. .++.
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf-~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKF-STDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccc-cccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 34578999999999999999999997311 11111 111111 1 22457899999999431 1222
Q ss_pred -Hhh--ccCEEEEEEeCC-CCCcccHHHHHHHHHh-cC---CCeEEEEEEccCCCC
Q 010060 135 -CAK--IADLALLLIDGS-YGFEMETFEFLNLMQN-HG---LPRVMGVLTHLDKFK 182 (519)
Q Consensus 135 -~ak--~ADlVLLVVDas-~g~e~et~e~L~~L~~-~G---iP~VI~VlNKlDl~~ 182 (519)
.++ .+|++|||+... ...+.+....+..++. .| ...+|+|+|+.|.+.
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 222 479999998764 2333344445555542 22 457888999999985
No 293
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.49 E-value=1.2e-06 Score=88.35 Aligned_cols=146 Identities=16% Similarity=0.273 Sum_probs=92.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc----c----------------------cCccc----------cccccEEEE-
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY----T----------------------KHNVP----------EVRGPITIV- 113 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~----T----------------------r~~v~----------~~~G~iti~- 113 (519)
...|..|.|+|..|+||||++.+|.... + |+.+. .+.|+|...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 4567899999999999999999999861 0 11110 123444321
Q ss_pred ----------------ecCceeEEEEcCCCCchh--------H-HHHh--hccCEEEEEEeCCCCCcccHH-----HHHH
Q 010060 114 ----------------SGKQRRLQFVECPNDING--------M-IDCA--KIADLALLLIDGSYGFEMETF-----EFLN 161 (519)
Q Consensus 114 ----------------~~~~~rl~fIDtPGdl~s--------m-ld~a--k~ADlVLLVVDas~g~e~et~-----e~L~ 161 (519)
......+++|||||.+.. + .+.+ ..--+|++|+|....-.+-++ ...+
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 012356899999997541 2 2332 344578899998766555555 3456
Q ss_pred HHHhcCCCeEEEEEEccCCCCCHHH------HHHHHHHHHH--------------hhhhhccCCceEEEEecccCC
Q 010060 162 LMQNHGLPRVMGVLTHLDKFKDVKK------LRKTKQRLKH--------------RFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 162 ~L~~~GiP~VI~VlNKlDl~~~~k~------l~~~kk~Lk~--------------~f~~e~~~~~kVf~lSAl~g~ 217 (519)
+|....+|.+ +|+||.|+.+..-. +......+.+ ....+||...+.+.+|+.+|.
T Consensus 176 ilyktklp~i-vvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 176 ILYKTKLPFI-VVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHhccCCeE-EEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 6667789966 48999999854211 1112222221 113478889999999999883
No 294
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.48 E-value=1.5e-06 Score=84.49 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=84.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-ccc---------------cccc-----cEE-EE------------------
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVP---------------EVRG-----PIT-IV------------------ 113 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~---------------~~~G-----~it-i~------------------ 113 (519)
|..|+|+|++|+|||||+++|++..... .+. ...+ .+. +.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLE 80 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHH
Confidence 6799999999999999999999862110 000 0000 010 00
Q ss_pred -------ecCceeEEEEcCCCC-chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC-H
Q 010060 114 -------SGKQRRLQFVECPND-INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD-V 184 (519)
Q Consensus 114 -------~~~~~rl~fIDtPGd-l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~-~ 184 (519)
......+++|++.|. +..++. ...+|.+|+|+|+..+..... ..... ..+.-+ +|+||+|+... .
T Consensus 81 ~L~~l~~~~~~~D~iiIEt~G~~l~~~~~-~~l~~~~i~vvD~~~~~~~~~-~~~~q---i~~ad~-~~~~k~d~~~~~~ 154 (199)
T TIGR00101 81 AVAEMEARFPPLEMVFIESGGDNLSATFS-PELADLTIFVIDVAAGDKIPR-KGGPG---ITRSDL-LVINKIDLAPMVG 154 (199)
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcccccc-hhhhCcEEEEEEcchhhhhhh-hhHhH---hhhccE-EEEEhhhcccccc
Confidence 001346788888883 333332 233788999999986544211 11111 112224 48999999842 2
Q ss_pred HHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
..+..+.+.++.. .+..++|.+||++| .++..+..+|..
T Consensus 155 ~~~~~~~~~~~~~-----~~~~~i~~~Sa~~g-----~gi~el~~~i~~ 193 (199)
T TIGR00101 155 ADLGVMERDAKKM-----RGEKPFIFTNLKTK-----EGLDTVIDWIEH 193 (199)
T ss_pred ccHHHHHHHHHHh-----CCCCCEEEEECCCC-----CCHHHHHHHHHh
Confidence 2344444444432 35799999999987 677777766653
No 295
>PTZ00258 GTP-binding protein; Provisional
Probab=98.44 E-value=4e-07 Score=96.95 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=51.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC------ccccccccEEEEec--------------CceeEEEEcCCCC-----
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH------NVPEVRGPITIVSG--------------KQRRLQFVECPND----- 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v~~~~G~iti~~~--------------~~~rl~fIDtPGd----- 128 (519)
...|+|||.||+|||||+|+|++..... ++....|.+.+... ...++.|+||||-
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 4689999999999999999998763110 00001121111100 0235999999993
Q ss_pred ----ch-hHHHHhhccCEEEEEEeCC
Q 010060 129 ----IN-GMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 129 ----l~-smld~ak~ADlVLLVVDas 149 (519)
+. .+++.++.||++|+|||+.
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22 4788899999999999984
No 296
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.44 E-value=8.8e-07 Score=88.29 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=60.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc------cCccccccccEEEEecCceeEEEEcCCCCch----------hHHHH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT------KHNVPEVRGPITIVSGKQRRLQFVECPNDIN----------GMIDC 135 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T------r~~v~~~~G~iti~~~~~~rl~fIDtPGdl~----------smld~ 135 (519)
...-+|+++|+|.+|||||+..|+.... -.+++.++| +..+.+..++++|.||.+. .++..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG---vi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG---VIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc---eEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 3457899999999999999999998521 223445566 5666788999999999544 25667
Q ss_pred hhccCEEEEEEeCCCC
Q 010060 136 AKIADLALLLIDGSYG 151 (519)
Q Consensus 136 ak~ADlVLLVVDas~g 151 (519)
++-||++|+|+||+.+
T Consensus 137 ArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 137 ARTADLILMVLDATKS 152 (364)
T ss_pred eecccEEEEEecCCcc
Confidence 8999999999999753
No 297
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=4.7e-07 Score=88.26 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCch---hHHHHhh---ccCEEEEEEeC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDIN---GMIDCAK---IADLALLLIDG 148 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~---smld~ak---~ADlVLLVVDa 148 (519)
..|.++|+.++|||+|.-.|.....+.+++.+....-.+-.....+++||.||+.. .+++..+ .|-.++||||+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDS 118 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDS 118 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEec
Confidence 57899999999999999888877655555443211112222344589999999843 3777776 79999999999
Q ss_pred CCCCcccH---HH----HHHHHH-hcCCCeEEEEEEccCCCC
Q 010060 149 SYGFEMET---FE----FLNLMQ-NHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 149 s~g~e~et---~e----~L~~L~-~~GiP~VI~VlNKlDl~~ 182 (519)
.. +...- -| +|.... ....|.++++.||-|++.
T Consensus 119 a~-f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 119 AT-FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred cc-cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 63 32221 12 333222 234555777899999974
No 298
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.42 E-value=2.6e-06 Score=85.09 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=33.7
Q ss_pred eEEEEcCCCCchh---------HHHHhh--ccCEEEEEEeCCCCCcccHH-----HHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 119 RLQFVECPNDING---------MIDCAK--IADLALLLIDGSYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 119 rl~fIDtPGdl~s---------mld~ak--~ADlVLLVVDas~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
.+.++||||.+.- .++.++ ..=++++++|+..--.+..+ ..+.+.-..++|.|. |+||+|+++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vn-vlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVN-VLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEE-EE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEE-eeeccCccc
Confidence 6999999997431 223333 34578999999755444333 122223347999765 899999986
No 299
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.42 E-value=4.9e-07 Score=92.15 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=49.3
Q ss_pred EEEECCCCCChHHHHHHHHhccccC------ccccccccEEEEec--------------CceeEEEEcCCCCc-------
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTKH------NVPEVRGPITIVSG--------------KQRRLQFVECPNDI------- 129 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v~~~~G~iti~~~--------------~~~rl~fIDtPGdl------- 129 (519)
|+|||.||+|||||+|+|++..... ++....|.+.+... ....+.|+|+||-+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 6899999999999999999974210 00111122222110 01259999999932
Q ss_pred ---hhHHHHhhccCEEEEEEeCC
Q 010060 130 ---NGMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 130 ---~smld~ak~ADlVLLVVDas 149 (519)
+.+++.++.||++|+|||+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 14778889999999999985
No 300
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.41 E-value=3.4e-06 Score=81.92 Aligned_cols=125 Identities=20% Similarity=0.300 Sum_probs=75.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC--cccc-----c-------------cccEEEEe-------------------
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVPE-----V-------------RGPITIVS------------------- 114 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~~-----~-------------~G~iti~~------------------- 114 (519)
|.+|++||++||||||.+-.|...+... .+.- . .-.+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 7899999999999999998888753111 0000 0 00122210
Q ss_pred cCceeEEEEcCCCC----------chhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH
Q 010060 115 GKQRRLQFVECPND----------INGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 115 ~~~~rl~fIDtPGd----------l~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~ 184 (519)
..+..++||||||. +..+++.+ ..+-++||+|++.+.+.. ..+.......++..+ ++||+|.....
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~~l--IlTKlDet~~~ 156 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDL-EQALAFYEAFGIDGL--ILTKLDETARL 156 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTCEE--EEESTTSSSTT
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHH-HHHHHHhhcccCceE--EEEeecCCCCc
Confidence 12356999999993 11233333 578899999998765432 255555555677766 48999997644
Q ss_pred HHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
..+-.+... .+.|+-++|
T Consensus 157 G~~l~~~~~----------~~~Pi~~it 174 (196)
T PF00448_consen 157 GALLSLAYE----------SGLPISYIT 174 (196)
T ss_dssp HHHHHHHHH----------HTSEEEEEE
T ss_pred ccceeHHHH----------hCCCeEEEE
Confidence 443333222 256776766
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.40 E-value=2.8e-06 Score=86.92 Aligned_cols=132 Identities=22% Similarity=0.409 Sum_probs=78.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcc---c----cccccEEE-------E-ecCceeEEEEcCCC--C-ch-----
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNV---P----EVRGPITI-------V-SGKQRRLQFVECPN--D-IN----- 130 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v---~----~~~G~iti-------~-~~~~~rl~fIDtPG--d-l~----- 130 (519)
.++|.|+|.+|+|||||||.|++......- . .......+ . .+....++|+|||| + +.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 368999999999999999999997311110 0 00111111 1 12356899999998 1 11
Q ss_pred -hHHHH------------h---------hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHH
Q 010060 131 -GMIDC------------A---------KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187 (519)
Q Consensus 131 -smld~------------a---------k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l 187 (519)
.+++. . ...|++|++|+++ .++.+...+++..|. ..-.||.|+.|.|.+. .+.+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls--~~vNvIPvIaKaD~lt-~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS--KRVNVIPVIAKADTLT-PEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT--TTSEEEEEESTGGGS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc--ccccEEeEEecccccC-HHHH
Confidence 11111 0 3468999999986 678777888888774 4456889999999996 4567
Q ss_pred HHHHHHHHHhhhhhccCCceEEEE
Q 010060 188 RKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
...++.+...+.. .+.++|..
T Consensus 161 ~~~k~~i~~~l~~---~~I~~f~f 181 (281)
T PF00735_consen 161 QAFKQRIREDLEE---NNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHH---TT--S---
T ss_pred HHHHHHHHHHHHH---cCceeecc
Confidence 7777777665532 34455543
No 302
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.33 E-value=5.9e-06 Score=80.27 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=80.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC----cccc-ccccEEEEecCceeEEEEcCCC--CchhHHHH-hhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVPE-VRGPITIVSGKQRRLQFVECPN--DINGMIDC-AKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~~-~~G~iti~~~~~~rl~fIDtPG--dl~smld~-ak~ADlVLLV 145 (519)
...|+++|.+|||||+|+-.+++..-.. ++.. ..-++++ .+....+.++||+| .+..|.+. +..+|.-++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEE-CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4689999999999999987777652111 1111 1122222 24556788999999 46667775 6888999999
Q ss_pred EeCCCCCcccHH-HHHHHH-H---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 146 IDGSYGFEMETF-EFLNLM-Q---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L-~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
++.+....-+.. .++..+ + ...+| +|+|.||+|+......-.+--+.+...+ ..+++-+||..+
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V~~eeg~~la~~~------~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQVSEEEGKALARSW------GCAFIETSAKLN 150 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccccCHHHHHHHHHhc------CCcEEEeeccCC
Confidence 998743221111 222222 2 23456 5679999999753211111112221111 345889999866
No 303
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.30 E-value=7.8e-06 Score=85.10 Aligned_cols=128 Identities=19% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--ccc------------------cccccEEEEe-----------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP------------------EVRGPITIVS----------------- 114 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~------------------~~~G~iti~~----------------- 114 (519)
.+|.+|+++|++|+||||++..|....... .+. .....+.++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999998752111 000 0000111110
Q ss_pred --cCceeEEEEcCCCCch----------hHHHHh-----hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEc
Q 010060 115 --GKQRRLQFVECPNDIN----------GMIDCA-----KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTH 177 (519)
Q Consensus 115 --~~~~rl~fIDtPGdl~----------smld~a-----k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNK 177 (519)
..+..+++|||||... .+.+.+ ...+-++||+||+.+...-. +........++..+ |+||
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~gi--IlTK 268 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLTGI--ILTK 268 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCCEE--EEEC
Confidence 1245799999999532 122222 24678999999996653221 22222233344433 6999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 178 LDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 178 lDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+|.......+..+... -+.|+.|++
T Consensus 269 lD~t~~~G~~l~~~~~----------~~~Pi~~v~ 293 (318)
T PRK10416 269 LDGTAKGGVVFAIADE----------LGIPIKFIG 293 (318)
T ss_pred CCCCCCccHHHHHHHH----------HCCCEEEEe
Confidence 9976543333333222 167898988
No 304
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1e-06 Score=96.49 Aligned_cols=122 Identities=17% Similarity=0.310 Sum_probs=92.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC----------cccc-----ccccEEE------EecCceeEEEEcCCCCchh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH----------NVPE-----VRGPITI------VSGKQRRLQFVECPNDING 131 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----------~v~~-----~~G~iti------~~~~~~rl~fIDtPGdl~s 131 (519)
.-++|+++-|-++|||||..+++..+.+. .+.+ -.-+||+ +.+.+.++.+|||||++.-
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45799999999999999999998864221 1110 0112444 3466899999999997553
Q ss_pred ---HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC--CHHHHHHHHHHHH
Q 010060 132 ---MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK--DVKKLRKTKQRLK 195 (519)
Q Consensus 132 ---mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~--~~k~l~~~kk~Lk 195 (519)
+..++++-|.+++|+|+..|++.|+.-....++..|+|++. .+||+|... +...+..+...|.
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~-FiNKmDRmGa~~~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRIC-FINKMDRMGASPFRTLNQIRTKLN 185 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEE-EEehhhhcCCChHHHHHHHHhhcC
Confidence 67789999999999999999999999999999999999886 699999975 3344555544443
No 305
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.1e-05 Score=84.72 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=51.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc------CccccccccEEEE-----------e-cC---ceeEEEEcCCCC----
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK------HNVPEVRGPITIV-----------S-GK---QRRLQFVECPND---- 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr------~~v~~~~G~iti~-----------~-~~---~~rl~fIDtPGd---- 128 (519)
.+.++|||.||||||||.|+|+..... .++..-.|.+.+. . .. ...+.|+|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 367999999999999999999987311 1111111211111 0 11 235789998762
Q ss_pred -----c-hhHHHHhhccCEEEEEEeCC
Q 010060 129 -----I-NGMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 129 -----l-~smld~ak~ADlVLLVVDas 149 (519)
| +..|+.++.+|.+++||++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3 35999999999999999997
No 306
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.1e-06 Score=92.43 Aligned_cols=119 Identities=17% Similarity=0.314 Sum_probs=88.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc----------ccCccccc-----cccEEEE------ecCceeEEEEcCCCCch---
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY----------TKHNVPEV-----RGPITIV------SGKQRRLQFVECPNDIN--- 130 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~----------Tr~~v~~~-----~G~iti~------~~~~~rl~fIDtPGdl~--- 130 (519)
++|+|+.+.++||||...+|+... ..+++++. ..+||+- .+++.|+.+|||||++.
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 689999999999999999888752 11122211 1235553 57899999999999744
Q ss_pred hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHH
Q 010060 131 GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKH 196 (519)
Q Consensus 131 smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~ 196 (519)
.+-+++++-|.++.|+|++.|++.+|.-..+....+.+|.+. .+||+|... ..++.....+.+
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~~ip~~~-finkmdk~~--anfe~avdsi~e 180 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHC-FINKMDKLA--ANFENAVDSIEE 180 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhh-hhhhhhhhh--hhhhhHHHHHHH
Confidence 266788899999999999999999999888888888999775 699999864 233444444433
No 307
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=8.3e-06 Score=79.43 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=82.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc----ccCccccccccEEE-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY----TKHNVPEVRGPITI-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~----Tr~~v~~~~G~iti-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
..|+++|-++||||-|+.+..... ++.++......-++ +.++....++|||.|. +.++ -...+.|-.+|||.
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVY 94 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 94 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEE
Confidence 679999999999999988887752 22222211111112 2445567899999996 4443 34568899999999
Q ss_pred eCCCCCcccH-HHHHHHHHhcCCC--eEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 147 DGSYGFEMET-FEFLNLMQNHGLP--RVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~~GiP--~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|.+....-+. ...|.-|+.|-=+ .+|+|-||+||........+--+.+.+ -.+..++.+||+.+.
T Consensus 95 DITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae------~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 95 DITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------KEGLFFLETSALDAT 162 (222)
T ss_pred echhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH------hcCceEEEecccccc
Confidence 9975332221 1345555655322 467789999997422111122222221 135667889999663
No 308
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.23 E-value=7e-06 Score=79.37 Aligned_cols=140 Identities=24% Similarity=0.346 Sum_probs=81.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc--------------cc---Ccccc-ccccEE-EEecC------------------
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY--------------TK---HNVPE-VRGPIT-IVSGK------------------ 116 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~--------------Tr---~~v~~-~~G~it-i~~~~------------------ 116 (519)
-+.|.|.|+||+|||+||-.++... |. ..+.. ..-++. +.++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 3899999999999999999988752 10 00000 000111 11111
Q ss_pred ---ceeEEEEcCCCCchhHHHHhhccC-EEEEEEeCCCCCcccHHHHHHHHHhcCCC----eEEEEEEccCCCCCHH-HH
Q 010060 117 ---QRRLQFVECPNDINGMIDCAKIAD-LALLLIDGSYGFEMETFEFLNLMQNHGLP----RVMGVLTHLDKFKDVK-KL 187 (519)
Q Consensus 117 ---~~rl~fIDtPGdl~smld~ak~AD-lVLLVVDas~g~e~et~e~L~~L~~~GiP----~VI~VlNKlDl~~~~k-~l 187 (519)
...+.||+..|+|...... ...| +-|+|||.++|-.-- + .|-| .=++|+||.|+.+--. .+
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~sp-~L~d~~~v~VidvteGe~~P--------~-K~gP~i~~aDllVInK~DLa~~v~~dl 162 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPFSP-DLGDHLRVVVIDVTEGEDIP--------R-KGGPGIFKADLLVINKTDLAPYVGADL 162 (202)
T ss_pred cCCcCCEEEEecCcceecccCc-chhhceEEEEEECCCCCCCc--------c-cCCCceeEeeEEEEehHHhHHHhCccH
Confidence 1357777877754432211 2244 888999998765311 0 1112 2345899999975211 12
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 188 RKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
....... .+.-+..++|.+|+++| +++..+.+|+..
T Consensus 163 evm~~da-----~~~np~~~ii~~n~ktg-----~G~~~~~~~i~~ 198 (202)
T COG0378 163 EVMARDA-----KEVNPEAPIIFTNLKTG-----EGLDEWLRFIEP 198 (202)
T ss_pred HHHHHHH-----HHhCCCCCEEEEeCCCC-----cCHHHHHHHHHh
Confidence 2222222 23458899999999987 677777777754
No 309
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=1.7e-06 Score=80.11 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=37.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEe--cCceeEEEEcCCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS--GKQRRLQFVECPN 127 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~--~~~~rl~fIDtPG 127 (519)
.+..|+++|.||+|||||+|+|++.. +..+....|..+... .....+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 45789999999999999999999863 222223334333221 1235689999998
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.19 E-value=2.5e-05 Score=81.76 Aligned_cols=133 Identities=19% Similarity=0.340 Sum_probs=86.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccccccc-----cEEEE--------ecCceeEEEEcCCC--C-ch--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVPEVRG-----PITIV--------SGKQRRLQFVECPN--D-IN-- 130 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~~~~G-----~iti~--------~~~~~rl~fIDtPG--d-l~-- 130 (519)
.+-+.+|.+||+.|.|||||+|.|++..-.. .+....+ .+.+. .+...++++||||| + +.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 4778999999999999999999999972111 1111111 11111 23467899999998 2 11
Q ss_pred hHHH----H--------------h--------hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 131 GMID----C--------------A--------KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 131 smld----~--------------a--------k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
.+++ . . ...+++|+.+-.+ +++.+...+++..|. ....+|.|+.|.|.+..
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls--~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS--KRVNLIPVIAKADTLTD 177 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh--cccCeeeeeeccccCCH
Confidence 0111 1 0 2357899999764 677777777777663 45568899999999964
Q ss_pred HHHHHHHHHHHHHhhhhhccCCceEE
Q 010060 184 VKKLRKTKQRLKHRFWTEIYDGAKLF 209 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e~~~~~kVf 209 (519)
..+...++.+.+-+. ....+||
T Consensus 178 -~El~~~K~~I~~~i~---~~nI~vf 199 (373)
T COG5019 178 -DELAEFKERIREDLE---QYNIPVF 199 (373)
T ss_pred -HHHHHHHHHHHHHHH---HhCCcee
Confidence 456777777766442 2355666
No 311
>PTZ00099 rab6; Provisional
Probab=98.16 E-value=1.2e-05 Score=76.41 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=65.7
Q ss_pred cCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC--CcccHHHHHHHHHhc--CCCeEEEEEEccCCCCCHH-H
Q 010060 115 GKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG--FEMETFEFLNLMQNH--GLPRVMGVLTHLDKFKDVK-K 186 (519)
Q Consensus 115 ~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g--~e~et~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k-~ 186 (519)
+....+.||||||. +..++ ..++.||++|||+|++.. |+.....+..++... ++| +++|.||+|+..... .
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~ 104 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKVT 104 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCCC
Confidence 34578999999995 44433 357899999999999864 332222222333332 344 567999999963211 1
Q ss_pred HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 187 LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 187 l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
..+..... . . -...+|.+||++| .++..++..|....+
T Consensus 105 ~~e~~~~~-~----~--~~~~~~e~SAk~g-----~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 105 YEEGMQKA-Q----E--YNTMFHETSAKAG-----HNIKVLFKKIAAKLP 142 (176)
T ss_pred HHHHHHHH-H----H--cCCEEEEEECCCC-----CCHHHHHHHHHHHHH
Confidence 11111111 1 1 1456889999987 567777776665544
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.16 E-value=3.8e-05 Score=78.24 Aligned_cols=128 Identities=19% Similarity=0.268 Sum_probs=75.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccc-------------------cccccEEEEe---------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP-------------------EVRGPITIVS--------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~-------------------~~~G~iti~~--------------- 114 (519)
..+|.+|+++|++|+||||++..|....... .+. ...| +.++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCCCCHHHHHHHHH
Confidence 4567899999999999999998887642111 000 0011 22221
Q ss_pred ----cCceeEEEEcCCCCch----------hHHHHhh-----ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEE
Q 010060 115 ----GKQRRLQFVECPNDIN----------GMIDCAK-----IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVL 175 (519)
Q Consensus 115 ----~~~~rl~fIDtPGdl~----------smld~ak-----~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~Vl 175 (519)
..+..++||||||... .+.+.+. .+|.++||+|++.+.+.- .....+.+..++-.+ |+
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~g~--Il 224 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVGLTGI--IL 224 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCCCCEE--EE
Confidence 1246789999999532 1222222 389999999998653321 233333334455544 69
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 176 THLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 176 NKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
||+|..........+... -+.|+.+++
T Consensus 225 TKlDe~~~~G~~l~~~~~----------~~~Pi~~~~ 251 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAYE----------LKLPIKFIG 251 (272)
T ss_pred EccCCCCCccHHHHHHHH----------HCcCEEEEe
Confidence 999987544433333322 157888877
No 313
>PRK14974 cell division protein FtsY; Provisional
Probab=98.15 E-value=2.6e-05 Score=81.75 Aligned_cols=126 Identities=20% Similarity=0.285 Sum_probs=74.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--ccc-------------------cccccEEEE-----------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP-------------------EVRGPITIV----------------- 113 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~-------------------~~~G~iti~----------------- 113 (519)
..|.+|+++|++|+||||++..|....... .+. ...| +.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lg-v~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG-VKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcC-CceecccCCCCHHHHHHHHHH
Confidence 457899999999999999888887642111 000 0001 1111
Q ss_pred --ecCceeEEEEcCCCCch---hHHHH------hhccCEEEEEEeCCCCCcccHHHHHHH-HHhcCCCeEEEEEEccCCC
Q 010060 114 --SGKQRRLQFVECPNDIN---GMIDC------AKIADLALLLIDGSYGFEMETFEFLNL-MQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 114 --~~~~~rl~fIDtPGdl~---smld~------ak~ADlVLLVVDas~g~e~et~e~L~~-L~~~GiP~VI~VlNKlDl~ 181 (519)
...+..+++|||+|.+. .+++. .-..|.++||+|+..|-+ ..+.+.. ....++..+ |+||+|..
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~a~~f~~~~~~~gi--IlTKlD~~ 292 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQAREFNEAVGIDGV--ILTKVDAD 292 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHHHHHHHhcCCCCEE--EEeeecCC
Confidence 01234699999999642 12222 234789999999976532 2222222 234566655 59999987
Q ss_pred CCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 182 KDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 182 ~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
..-..+..+... .+.||.|++
T Consensus 293 ~~~G~~ls~~~~----------~~~Pi~~i~ 313 (336)
T PRK14974 293 AKGGAALSIAYV----------IGKPILFLG 313 (336)
T ss_pred CCccHHHHHHHH----------HCcCEEEEe
Confidence 543333333221 267888887
No 314
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=5.7e-05 Score=79.08 Aligned_cols=136 Identities=18% Similarity=0.329 Sum_probs=85.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCccc------------------cccccEEEEecC-------------------
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVP------------------EVRGPITIVSGK------------------- 116 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~------------------~~~G~iti~~~~------------------- 116 (519)
..|.++|.-..||||+|+.|+.+. +...+. .+.|..-++..+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 478999999999999999999872 111100 012211111100
Q ss_pred -------ceeEEEEcCCCC-------------chhHHH-HhhccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEE
Q 010060 117 -------QRRLQFVECPND-------------INGMID-CAKIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGV 174 (519)
Q Consensus 117 -------~~rl~fIDtPGd-------------l~smld-~ak~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~V 174 (519)
-..+++|||||- |..++. .+..||.++||+|+. -.+.++..+++..|+.+--. +=+|
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVV 217 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVV 217 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEE
Confidence 125899999993 333333 468899999999995 34566777899999876544 4457
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhhhhc----cCCceEEEEeccc
Q 010060 175 LTHLDKFKDVKKLRKTKQRLKHRFWTEI----YDGAKLFYLSGLI 215 (519)
Q Consensus 175 lNKlDl~~~~k~l~~~kk~Lk~~f~~e~----~~~~kVf~lSAl~ 215 (519)
+||.|.++. +++..+.-.| +|+-. .+....+|+-+..
T Consensus 218 LNKADqVdt-qqLmRVyGAL---mWslgkv~nTpev~rvYigSfw 258 (532)
T KOG1954|consen 218 LNKADQVDT-QQLMRVYGAL---MWSLGKVMNTPEVSRVYIGSFW 258 (532)
T ss_pred eccccccCH-HHHHHHHHHH---HHhhhhhcCCCcceeEEeeccc
Confidence 999999964 4555554443 46432 1333344554444
No 315
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=2.3e-05 Score=83.20 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc-c---Cccccc-------------------cc-cEEEEe-----------cCc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT-K---HNVPEV-------------------RG-PITIVS-----------GKQ 117 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r---~~v~~~-------------------~G-~iti~~-----------~~~ 117 (519)
...+|+++|++|+||||++..|...+. + ..+..+ .| ++.... ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 356999999999999999999987531 1 111100 01 222111 125
Q ss_pred eeEEEEcCCCCc--h----h---HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHh-c--------CCCeEEEEEEccC
Q 010060 118 RRLQFVECPNDI--N----G---MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN-H--------GLPRVMGVLTHLD 179 (519)
Q Consensus 118 ~rl~fIDtPGdl--~----s---mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~-~--------GiP~VI~VlNKlD 179 (519)
..++||||+|.. . . ++..+..++-.+||++|+.+.+.-. +++..... . ++..+ |+||+|
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~--I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGC--ILTKLD 292 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEE--EEeccc
Confidence 689999999942 1 1 2223334456799999987664432 22322222 2 23344 589999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 180 KFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 180 l~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
....-..+-.+... .+.+|.|++ +|...|
T Consensus 293 Et~~~G~~l~~~~~----------~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 293 EASNLGGVLDTVIR----------YKLPVHYVS--TGQKVP 321 (374)
T ss_pred cCCCccHHHHHHHH----------HCcCeEEEe--cCCCCC
Confidence 87543333333211 256777776 344444
No 316
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.12 E-value=3.1e-05 Score=83.57 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--cc-------------------ccccc-cEEEE-ec------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NV-------------------PEVRG-PITIV-SG------------ 115 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v-------------------~~~~G-~iti~-~~------------ 115 (519)
..+|.+|+++|++|+||||++..|.....+. .+ ....+ |+... ..
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 4568999999999999999999997532110 00 00001 22111 10
Q ss_pred ----CceeEEEEcCCCCch-------hHHHH--hhccCEEEEEEeCCCCCcccHHHHHHHHHh-cCCCeEEEEEEccCCC
Q 010060 116 ----KQRRLQFVECPNDIN-------GMIDC--AKIADLALLLIDGSYGFEMETFEFLNLMQN-HGLPRVMGVLTHLDKF 181 (519)
Q Consensus 116 ----~~~rl~fIDtPGdl~-------smld~--ak~ADlVLLVVDas~g~e~et~e~L~~L~~-~GiP~VI~VlNKlDl~ 181 (519)
....++||||||... .+... +...|.++||+||+.|.+. ...+..+.. .++..+ |+||+|..
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~--IlTKlD~~ 252 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSV--IITKLDGH 252 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEE--EEECccCC
Confidence 246899999999432 12222 2346889999999877543 233343332 344433 69999986
Q ss_pred CCH
Q 010060 182 KDV 184 (519)
Q Consensus 182 ~~~ 184 (519)
...
T Consensus 253 arg 255 (429)
T TIGR01425 253 AKG 255 (429)
T ss_pred CCc
Confidence 543
No 317
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=3.7e-05 Score=82.10 Aligned_cols=134 Identities=14% Similarity=0.216 Sum_probs=78.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC------------cccc---------ccc-cEEEEec--------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH------------NVPE---------VRG-PITIVSG-------------- 115 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~------------~v~~---------~~G-~iti~~~-------------- 115 (519)
..|.+|+|+|++|+||||++..|....... .+.. ..| ++.+...
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 346899999999999999999997642110 0000 011 2221110
Q ss_pred CceeEEEEcCCCCch-------hHHHHh--hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHH
Q 010060 116 KQRRLQFVECPNDIN-------GMIDCA--KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK 186 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~-------smld~a--k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~ 186 (519)
.+..++||||||... .+...+ ...|.++||+||+.+.. +..+++..+...++..+ |+||+|....-..
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~idgl--I~TKLDET~k~G~ 395 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDGI--VFTKFDETASSGE 395 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCCCEE--EEEcccCCCCccH
Confidence 124799999999422 222222 23578899999974332 23456666666677776 4899998764444
Q ss_pred HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 187 LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 187 l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+-.+... .+.||.|++ +|...|
T Consensus 396 iLni~~~----------~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 396 LLKIPAV----------SSAPIVLMT--DGQDVK 417 (436)
T ss_pred HHHHHHH----------HCcCEEEEe--CCCCCC
Confidence 3333322 256776766 343444
No 318
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.12 E-value=1.1e-05 Score=88.44 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=76.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEE---EecCceeEEEEcCCCCch---hHHHHhhccCEEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI---VSGKQRRLQFVECPNDIN---GMIDCAKIADLALL 144 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti---~~~~~~rl~fIDtPGdl~---smld~ak~ADlVLL 144 (519)
.....+|+|||-.||||||||-+|+...-...|......|++ ++....-.+++|++.+-+ .....++.||++++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 456789999999999999999999998533333332233333 223344588999986544 35678999999999
Q ss_pred EEeCCCCCccc--HHHHHHHHHhc-----CCCeEEEEEEccCCCC
Q 010060 145 LIDGSYGFEME--TFEFLNLMQNH-----GLPRVMGVLTHLDKFK 182 (519)
Q Consensus 145 VVDas~g~e~e--t~e~L~~L~~~-----GiP~VI~VlNKlDl~~ 182 (519)
|.+++..-+.+ ....|-.++.. .+| ||+|-||+|...
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~ 129 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGD 129 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCcc
Confidence 99887533322 22456666653 356 677999999975
No 319
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.12 E-value=1.9e-05 Score=74.05 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=88.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccc-c--cccEEE--EecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE-V--RGPITI--VSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~-~--~G~iti--~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|.+||-+|||||+|+-+.+..+-...... + .-.++. +.+++..+.+|||.|. |.. +-...+.|-.+|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 357899999999999999998887642221111 1 111222 3466788999999995 444 3456788999999
Q ss_pred EEeCCCCCc--c---cHHHHHHHHHhcCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 145 LIDGSYGFE--M---ETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 145 VVDas~g~e--~---et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|.|.+..-. . +..|+-...-.+.+-. |+|-||+|.-.+... .++-.+..++ ...-++..||++.
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diik-mlVgNKiDkes~R~V~reEG~kfAr~-------h~~LFiE~SAkt~-- 159 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIK-MLVGNKIDKESERVVDREEGLKFARK-------HRCLFIECSAKTR-- 159 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhH-hhhcccccchhcccccHHHHHHHHHh-------hCcEEEEcchhhh--
Confidence 999974311 1 1112222222234443 458999997532111 1111121111 2445677898854
Q ss_pred CChhHHHHHHHHHHhhcC-CCCccc
Q 010060 219 YSKREIRNLARFISVMKF-PPLSWR 242 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~-r~~~wR 242 (519)
+.+......+...+. .|-.|.
T Consensus 160 ---~~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 160 ---ENVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred ---ccHHHHHHHHHHHHhcCcchhh
Confidence 445544444433333 455564
No 320
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=1.7e-05 Score=72.21 Aligned_cols=79 Identities=10% Similarity=0.220 Sum_probs=56.0
Q ss_pred hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCce
Q 010060 130 NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAK 207 (519)
Q Consensus 130 ~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~k 207 (519)
..+++.++.||++|+|+|++.+...+..++...+... +.|.+ +|+||+|+..+ .......+.++. .+.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~i-ivlNK~DL~~~-~~~~~~~~~~~~-------~~~~ 73 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNI-LLLNKADLLTE-EQRKAWAEYFKK-------EGIV 73 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEE-EEEechhcCCH-HHHHHHHHHHHh-------cCCe
Confidence 3467889999999999999988877766777777665 77755 58999999743 332222222221 2357
Q ss_pred EEEEecccCC
Q 010060 208 LFYLSGLIHG 217 (519)
Q Consensus 208 Vf~lSAl~g~ 217 (519)
++++||+++.
T Consensus 74 ii~iSa~~~~ 83 (141)
T cd01857 74 VVFFSALKEN 83 (141)
T ss_pred EEEEEecCCC
Confidence 8999998763
No 321
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.11 E-value=4.3e-05 Score=75.53 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=51.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC----ccc-cccccEEEEec-----CceeEEEEcCCCCch--------h-
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVP-EVRGPITIVSG-----KQRRLQFVECPNDIN--------G- 131 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~-~~~G~iti~~~-----~~~rl~fIDtPGdl~--------s- 131 (519)
..+-.+|+|+|++++|||||+|.|++....- ... +..| +.+... ...+++|+||||-.. .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g-i~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG-IWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc-eEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 3456799999999999999999999972111 111 1223 333321 357899999999321 1
Q ss_pred HHHHhh--ccCEEEEEEeCC
Q 010060 132 MIDCAK--IADLALLLIDGS 149 (519)
Q Consensus 132 mld~ak--~ADlVLLVVDas 149 (519)
.+-++. .+|++|+.++..
T Consensus 83 ~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 83 RLFALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHHHHhCEEEEeccCc
Confidence 223333 499999999885
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.10 E-value=2.1e-05 Score=72.80 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=51.7
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLF 209 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf 209 (519)
++.+++.||++|+|+|++.++......+...+... +.| +|+|+||+|++++ ..+......+.+ .+... +|
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~-~~~~~~~~~~~~-----~~~~~-~~ 73 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVPT-WVTARWVKILSK-----EYPTI-AF 73 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC-EEEEEEchhcCCH-HHHHHHHHHHhc-----CCcEE-EE
Confidence 46788999999999999987766666666666543 477 4568999999853 333333333221 22222 68
Q ss_pred EEecccC
Q 010060 210 YLSGLIH 216 (519)
Q Consensus 210 ~lSAl~g 216 (519)
++||+.+
T Consensus 74 ~iSa~~~ 80 (157)
T cd01858 74 HASINNP 80 (157)
T ss_pred Eeecccc
Confidence 9999866
No 323
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=6.7e-06 Score=88.42 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=77.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc---------------ccCccccccccEEEEe----------------------c
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY---------------TKHNVPEVRGPITIVS----------------------G 115 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~---------------Tr~~v~~~~G~iti~~----------------------~ 115 (519)
.-+++.||.|.++|||||..+|+... ||.. +-.-.||+.+ +
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkD--EQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKD--EQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccc--hhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34688999999999999999999751 1110 0011244321 1
Q ss_pred CceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 116 KQRRLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
...-+.+||.||+ |.+ +-.++++.|.+|+|+|+-.|+.-||.-.|.......+..++ |+||+|..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvl-v~NK~DRA 163 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVL-VMNKMDRA 163 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceE-EeehhhHH
Confidence 2345789999996 556 55678999999999999999999999888877666666564 79999963
No 324
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.06 E-value=1.8e-05 Score=80.21 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=75.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcccc-ccccEEEE--ecCceeEEEEcCCC------------CchhH-HHHh-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE-VRGPITIV--SGKQRRLQFVECPN------------DINGM-IDCA- 136 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~-~~G~iti~--~~~~~rl~fIDtPG------------dl~sm-ld~a- 136 (519)
+..++++|.+|+|||+|||.|+..-....... ..|.+... ..-+.++.++|.|| ++..+ ...+
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~l 215 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLL 215 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHH
Confidence 47899999999999999999998632111111 12222111 12256899999999 12221 2222
Q ss_pred --hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 137 --KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 137 --k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
+.-=-++|++|++-++.+-+..++++|..+++|..+ |+||+|..+
T Consensus 216 eR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~-vfTK~DK~k 262 (320)
T KOG2486|consen 216 ERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTS-VFTKCDKQK 262 (320)
T ss_pred hhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEE-eeehhhhhh
Confidence 233357888999999999889999999999999776 899999875
No 325
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=5.3e-05 Score=69.76 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=90.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~ 150 (519)
...|..+|..++||||++..|.-......++++.-.+..++.++..+.++|..|. +...+. .....-.+|||+|+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc
Confidence 4678899999999999999998875554555444445556778889999999884 666665 4577889999999865
Q ss_pred C--CcccHHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCceEEEEecccC
Q 010060 151 G--FEMETFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIH 216 (519)
Q Consensus 151 g--~e~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g 216 (519)
. +++.-.|+-+++... ..+ +++..||-|+... -...++.+. |.-+-. ...-|.|.||++|
T Consensus 97 ~dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A-~~pqei~d~----leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 97 RDRIEEARNELHRIINDREMRDAI-ILILANKQDLPDA-MKPQEIQDK----LELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred hhhHHHHHHHHHHHhCCHhhhcce-EEEEecCcccccc-cCHHHHHHH----hccccccCCccEeeccccccc
Confidence 4 333344777777543 334 3345799999742 122333332 211111 2345778888876
No 326
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.04 E-value=6.2e-06 Score=78.43 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=37.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEe--cCceeEEEEcCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS--GKQRRLQFVECPN 127 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~--~~~~rl~fIDtPG 127 (519)
..+..|+|+|.||+|||||+|+|++.... .+....|..+... .....+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 45689999999999999999999986321 2222233222111 1235799999998
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=0.00011 Score=78.40 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=75.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc------Cccc-------------------cc-cccEEEEe-----------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK------HNVP-------------------EV-RGPITIVS----------- 114 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr------~~v~-------------------~~-~G~iti~~----------- 114 (519)
..|.+|+++|++|+||||.+..|...+.. ..+. .. .-|+.+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 44689999999999999999888754310 0110 00 11333221
Q ss_pred cCceeEEEEcCCCCch-------h---HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH
Q 010060 115 GKQRRLQFVECPNDIN-------G---MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 115 ~~~~rl~fIDtPGdl~-------s---mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~ 184 (519)
..+..+++|||+|... . +++.+..-.-++||+||+.+... ..+++......|+..+ ++||+|.....
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~~~~~--I~TKlDet~~~ 328 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFSYKTV--IFTKLDETTCV 328 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCCCCEE--EEEeccCCCcc
Confidence 1356799999998422 2 22222222268999999876332 2255555555566666 48999987644
Q ss_pred HHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
..+-.+... .+.|+.|++
T Consensus 329 G~~l~~~~~----------~~~Pi~yit 346 (388)
T PRK12723 329 GNLISLIYE----------MRKEVSYVT 346 (388)
T ss_pred hHHHHHHHH----------HCCCEEEEe
Confidence 443333221 256676665
No 328
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=5.1e-05 Score=70.44 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=66.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCcccccccc--E-EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGP--I-TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~--i-ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVV 146 (519)
..|++||..|+|||.|+++.+... ....-.++.-. | |+ +.+.+..+++|||.|. |.+ +-.....|..+|||.
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvy 87 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEE
Confidence 578999999999999999887652 11100001000 1 11 2456789999999995 666 345678899999999
Q ss_pred eCCCCC-----cccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 147 DGSYGF-----EMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 147 Das~g~-----e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
|.+... .++..|+-..... .+-.| +|-||+|+..
T Consensus 88 discqpsfdclpewlreie~yan~-kvlki-lvgnk~d~~d 126 (213)
T KOG0095|consen 88 DISCQPSFDCLPEWLREIEQYANN-KVLKI-LVGNKIDLAD 126 (213)
T ss_pred ecccCcchhhhHHHHHHHHHHhhc-ceEEE-eeccccchhh
Confidence 987422 1222233333222 22234 5789999874
No 329
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.7e-05 Score=84.10 Aligned_cols=95 Identities=15% Similarity=0.296 Sum_probs=62.1
Q ss_pred eeEEEEcCCC-Cch----hHHH-HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH-HHHHH
Q 010060 118 RRLQFVECPN-DIN----GMID-CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK-KLRKT 190 (519)
Q Consensus 118 ~rl~fIDtPG-dl~----smld-~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k-~l~~~ 190 (519)
..+.++|.|| ++. +-++ .+..||++|||+.|-..+.....+|+..... +.|.|+++.||+|...++. ..+.+
T Consensus 206 nDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~-~KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE-EKPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred ccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-cCCcEEEEechhhhhcccHHHHHHH
Confidence 3689999999 333 3333 4689999999999976666555567765544 5999999999999976432 23444
Q ss_pred HHHHHHhhh--hhccCCceEEEEecc
Q 010060 191 KQRLKHRFW--TEIYDGAKLFYLSGL 214 (519)
Q Consensus 191 kk~Lk~~f~--~e~~~~~kVf~lSAl 214 (519)
++++.. +. ++.-....||+|||.
T Consensus 285 ~~Qi~e-L~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 285 LKQIHE-LSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHh-cCcccHhhhcCeeEEEecc
Confidence 444321 10 011134579999954
No 330
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=7.3e-05 Score=80.56 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=74.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc----cCcccc-------------------ccc-cEEEEe-----------cC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT----KHNVPE-------------------VRG-PITIVS-----------GK 116 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T----r~~v~~-------------------~~G-~iti~~-----------~~ 116 (519)
..+.+|++||++|+||||++..|.+.+. ...+.. ..| ++.... -.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 3457999999999999999998876421 001100 011 111110 12
Q ss_pred ceeEEEEcCCCCch------h---HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHH
Q 010060 117 QRRLQFVECPNDIN------G---MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187 (519)
Q Consensus 117 ~~rl~fIDtPGdl~------s---mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l 187 (519)
...+++|||+|-.. . ++..+....-++||+||+.+.. .-.+++......++..+ |+||+|.......+
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~~--I~TKlDEt~~~G~~ 345 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHGC--IITKVDEAASLGIA 345 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCEE--EEEeeeCCCCccHH
Confidence 45789999999422 2 2222223456889999985432 12356666666677766 48999987644433
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEe
Q 010060 188 RKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
-.+... .+.++.|++
T Consensus 346 l~~~~~----------~~lPi~yvt 360 (420)
T PRK14721 346 LDAVIR----------RKLVLHYVT 360 (420)
T ss_pred HHHHHH----------hCCCEEEEE
Confidence 333221 256777776
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.97 E-value=6.3e-05 Score=69.23 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=59.4
Q ss_pred HHHH-hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEE
Q 010060 132 MIDC-AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 132 mld~-ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
++.. ...||++|+|+|++.+...+..+++..+...+.|.+ +|+||+|+... ....... .+.. . .+.++|+
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~i-iv~NK~Dl~~~-~~~~~~~-~~~~----~--~~~~~~~ 75 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLL-IVLNKADLVPK-EVLEKWK-SIKE----S--EGIPVVY 75 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEE-EEEEhHHhCCH-HHHHHHH-HHHH----h--CCCcEEE
Confidence 4444 456999999999987766666677776666788855 58999999742 2222211 1111 1 2467999
Q ss_pred EecccCCcCChhHHHHHHHHHHhhcC
Q 010060 211 LSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
+||+++ .++..|...|....+
T Consensus 76 iSa~~~-----~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKER-----LGTKILRRTIKELAK 96 (156)
T ss_pred EEcccc-----ccHHHHHHHHHHHHh
Confidence 999976 566667766665443
No 332
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00016 Score=77.90 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=82.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc-c--Cccc-------------------cccc-cEEEE----------ecCcee
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT-K--HNVP-------------------EVRG-PITIV----------SGKQRR 119 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r--~~v~-------------------~~~G-~iti~----------~~~~~r 119 (519)
++.+|+|+|++|+||||++..|...+. . ..+. ...| ++... ...+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 467899999999999999999886421 0 0010 0001 12111 012567
Q ss_pred EEEEcCCCCch-------hHHHHhhc-----cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHH
Q 010060 120 LQFVECPNDIN-------GMIDCAKI-----ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187 (519)
Q Consensus 120 l~fIDtPGdl~-------smld~ak~-----ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l 187 (519)
++||||||... .+...+.. ..-++||+||+.+.. ...+++......|+..+ |+||+|-......+
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~gl--IlTKLDEt~~~G~i 378 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRRI--LLTKLDEADFLGSF 378 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCEE--EEEcccCCCCccHH
Confidence 89999998421 22222222 336889999987643 23455555566677776 58999987544443
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHH-HHHHhh
Q 010060 188 RKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLA-RFISVM 234 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~Ll-R~I~~~ 234 (519)
-.+... .+.||.|++ .|...| +++.... ..|+..
T Consensus 379 l~i~~~----------~~lPI~ylt--~GQ~VP-eDi~~A~~~~l~~~ 413 (432)
T PRK12724 379 LELADT----------YSKSFTYLS--VGQEVP-FDILNATKNLMAEC 413 (432)
T ss_pred HHHHHH----------HCCCEEEEe--cCCCCC-CCHHHhhHHHHHHH
Confidence 333322 256676665 233333 3443333 444433
No 333
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=6.5e-05 Score=79.88 Aligned_cols=135 Identities=11% Similarity=0.164 Sum_probs=75.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--ccc-------------------cccc-cEEEEec--------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP-------------------EVRG-PITIVSG-------------- 115 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~-------------------~~~G-~iti~~~-------------- 115 (519)
.++.+|+++|++||||||++..|....... .+. ...+ ++.+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 457899999999999999999888642100 000 0011 2322211
Q ss_pred CceeEEEEcCCCCch--h-HHH----Hh--hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHH
Q 010060 116 KQRRLQFVECPNDIN--G-MID----CA--KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK 186 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~--s-mld----~a--k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~ 186 (519)
....++||||||... . .++ .. -..|.++||+++..... +..+++......++..+ |+||+|....-..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~-d~~~i~~~f~~l~i~gl--I~TKLDET~~~G~ 360 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSA-DVMTILPKLAEIPIDGF--IITKMDETTRIGD 360 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHH-HHHHHHHhcCcCCCCEE--EEEcccCCCCccH
Confidence 235899999999521 1 111 11 23477888888743221 22344444444555555 5999998754333
Q ss_pred HHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 187 LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 187 l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+-.+... .+.||.|+| +|..++.
T Consensus 361 ~Lsv~~~----------tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 361 LYTVMQE----------TNLPVLYMT--DGQNITE 383 (407)
T ss_pred HHHHHHH----------HCCCEEEEe--cCCCCCc
Confidence 3333322 266777776 3444443
No 334
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.94 E-value=6e-05 Score=70.97 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=94.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcccccc-c------cEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVR-G------PITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~-G------~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
.+..|||-+-+|||+|+...+...-. .+.++. | -+.+..+.+..+++|||.|. +.+ +-.....+=.+++
T Consensus 9 frlivigdstvgkssll~~ft~gkfa-elsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFA-ELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccc-ccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 46789999999999999888764210 111111 1 11122345678999999995 666 4556788889999
Q ss_pred EEeCCCC--Ccc---cHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYG--FEM---ETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g--~e~---et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|.|.+.. |+- +..|....++....+...+|-.|+|+......-.+-.+.+.+ ..+..++-+||++|
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa------~hgM~FVETSak~g--- 158 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA------SHGMAFVETSAKNG--- 158 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH------hcCceEEEecccCC---
Confidence 9999743 221 111222122212234455677999998532222222222322 35788999999977
Q ss_pred ChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEec
Q 010060 220 SKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDV 256 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edi 256 (519)
.++....+.|+..++..+ ...-|-+.+.|..+
T Consensus 159 --~NVeEAF~mlaqeIf~~i---~qGeik~edgw~gv 190 (213)
T KOG0091|consen 159 --CNVEEAFDMLAQEIFQAI---QQGEIKLEDGWGGV 190 (213)
T ss_pred --CcHHHHHHHHHHHHHHHH---hcCceeeeeccccc
Confidence 344444454544443221 11244455555443
No 335
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00014 Score=67.80 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=69.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc----ccCccccccc-cEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY----TKHNVPEVRG-PITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~----Tr~~v~~~~G-~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVV 146 (519)
..+.|+|+.|+|||.|+...+... ..+++...-| .|.-+-++..++++|||.|. |.+ +......|-.+|||.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 468899999999999999888752 2222221112 11122345678999999995 666 455678899999999
Q ss_pred eCCCCCcccH-HHHHHHHHhcCCCeE--EEEEEccCCCC
Q 010060 147 DGSYGFEMET-FEFLNLMQNHGLPRV--MGVLTHLDKFK 182 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~~GiP~V--I~VlNKlDl~~ 182 (519)
|++..-.-+. -..|+-++..--|.| |++-||-|+-.
T Consensus 90 D~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred eccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 9974321111 134444555555544 34458999864
No 336
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=2.6e-05 Score=73.52 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=71.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchh---HHHHhhccCEEEEEEeCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDING---MIDCAKIADLALLLIDGS 149 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~s---mld~ak~ADlVLLVVDas 149 (519)
.+-.+.++|..|+|||||++.|-..-..+-+++......-....+-+++.+|..|+..+ --++...+|.+++++||.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~ 98 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAY 98 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehh
Confidence 45678999999999999999887763322222211111111224568999999998776 347888999999999996
Q ss_pred C--CCcccHH---HHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 150 Y--GFEMETF---EFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 150 ~--g~e~et~---e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
. .+.+.-. .+|+.-....+|.+| ..||+|...
T Consensus 99 d~er~~es~~eld~ll~~e~la~vp~li-lgnKId~p~ 135 (193)
T KOG0077|consen 99 DQERFAESKKELDALLSDESLATVPFLI-LGNKIDIPY 135 (193)
T ss_pred hHHHhHHHHHHHHHHHhHHHHhcCccee-ecccccCCC
Confidence 3 2222111 233333345788665 699999975
No 337
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00017 Score=75.94 Aligned_cols=136 Identities=21% Similarity=0.387 Sum_probs=86.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc--ccCccc----cccccEEE-------E-ecCceeEEEEcCCC--C-c----
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY--TKHNVP----EVRGPITI-------V-SGKQRRLQFVECPN--D-I---- 129 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~--Tr~~v~----~~~G~iti-------~-~~~~~rl~fIDtPG--d-l---- 129 (519)
.+-.+.+.|+|..|.|||||||+|+... ....+. .+.-.+.+ . .+...+++++|||| | +
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 4667999999999999999999999871 110000 00011111 1 13467899999998 1 1
Q ss_pred -------------hhHHHH--------h--hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH
Q 010060 130 -------------NGMIDC--------A--KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 130 -------------~smld~--------a--k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k 185 (519)
...+.. . ...+++|+.|..+ .|+.+.+.+++..+. ..-.+|.|+-|.|.+.. .
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~--~~vNiIPVI~KaD~lT~-~ 174 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS--KKVNLIPVIAKADTLTK-D 174 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh--ccccccceeeccccCCH-H
Confidence 011110 1 2568899999875 678888888877664 33357889999999964 4
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+..+++.+.+-+. ....++|...
T Consensus 175 El~~~K~~I~~~i~---~~nI~vf~fp 198 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIE---EHNIKVFDFP 198 (366)
T ss_pred HHHHHHHHHHHHHH---HcCcceecCC
Confidence 56677766655442 2455666544
No 338
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.87 E-value=0.00021 Score=77.46 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc--cc-------------------cccc-cEEEEe---------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--VP-------------------EVRG-PITIVS--------------- 114 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v~-------------------~~~G-~iti~~--------------- 114 (519)
.+|.+|+++|++|+||||++..|........ +. ...+ ++....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4688999999999999999988876421110 00 0001 111110
Q ss_pred cCceeEEEEcCCCCchh---------HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHH-hcCCCeEEEEEEccCCCCCH
Q 010060 115 GKQRRLQFVECPNDING---------MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQ-NHGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 115 ~~~~rl~fIDtPGdl~s---------mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~-~~GiP~VI~VlNKlDl~~~~ 184 (519)
.....+++|||||.+.. .+..+-.+|.++||+|++.+. +....+..+. ..++-. +|+||+|....-
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~~l~i~g--vIlTKlD~~a~~ 248 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHEAVGIGG--IIITKLDGTAKG 248 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHhcCCCCE--EEEecccCCCcc
Confidence 01247899999985331 223345689999999998763 2223333322 223333 468999986433
Q ss_pred HHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
..+..+... .+.||.|++
T Consensus 249 G~~ls~~~~----------~~~Pi~fig 266 (437)
T PRK00771 249 GGALSAVAE----------TGAPIKFIG 266 (437)
T ss_pred cHHHHHHHH----------HCcCEEEEe
Confidence 333333322 256777766
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.87 E-value=9.9e-05 Score=69.38 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCCc----hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh
Q 010060 126 PNDI----NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE 201 (519)
Q Consensus 126 PGdl----~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e 201 (519)
||++ ..+...++.||++|+|+|++.+......+++..+ .+.|. ++|+||+|+... .......+.++ .
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~-ilVlNK~Dl~~~-~~~~~~~~~~~-----~ 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPR-IIVLNKADLADP-KKTKKWLKYFE-----S 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCE-EEEEehhhcCCh-HHHHHHHHHHH-----h
Confidence 5653 3467789999999999999877665555565554 35664 468999999743 22212111111 1
Q ss_pred ccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 202 IYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 202 ~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
...+++++||+++ .++..|.+.|...
T Consensus 74 --~~~~vi~iSa~~~-----~gi~~L~~~l~~~ 99 (171)
T cd01856 74 --KGEKVLFVNAKSG-----KGVKKLLKAAKKL 99 (171)
T ss_pred --cCCeEEEEECCCc-----ccHHHHHHHHHHH
Confidence 2357899999865 5666666666554
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.81 E-value=0.00013 Score=67.41 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=52.3
Q ss_pred CEEEEEEeCCCCCcccHHHHH-HHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 140 DLALLLIDGSYGFEMETFEFL-NLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~e~L-~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|++|+|+|+..+...+...+. ..+...+.|.+ +|+||+|++.. ..+......+. .. .+.+++++||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~I-iVlNK~Dl~~~-~~~~~~~~~~~-----~~-~~~~ii~vSa~~~-- 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLI-LVLNKADLVPK-EVLRKWLAYLR-----HS-YPTIPFKISATNG-- 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEE-EEEechhcCCH-HHHHHHHHHHH-----hh-CCceEEEEeccCC--
Confidence 899999999877665555555 45666788855 58999999753 32222222221 11 2467999999976
Q ss_pred CChhHHHHHHHHHHh
Q 010060 219 YSKREIRNLARFISV 233 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~ 233 (519)
..+..|.+.|..
T Consensus 71 ---~gi~~L~~~i~~ 82 (155)
T cd01849 71 ---QGIEKKESAFTK 82 (155)
T ss_pred ---cChhhHHHHHHH
Confidence 456666665543
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.81 E-value=0.00014 Score=73.93 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCchh----HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh
Q 010060 126 PNDING----MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE 201 (519)
Q Consensus 126 PGdl~s----mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e 201 (519)
||++.. +...++.||+||+|+||..++......++..+ .+.| +|+|+||+|+... .......+.+. .
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~-~~~~~~~~~~~-----~ 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADP-AVTKQWLKYFE-----E 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCH-HHHHHHHHHHH-----H
Confidence 787664 55678999999999999887776666666665 3566 4568999999742 22222222221 1
Q ss_pred ccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 202 IYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 202 ~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
.+.+++++||.++ .++..|...|...
T Consensus 76 --~~~~vi~iSa~~~-----~gi~~L~~~i~~~ 101 (276)
T TIGR03596 76 --KGIKALAINAKKG-----KGVKKIIKAAKKL 101 (276)
T ss_pred --cCCeEEEEECCCc-----ccHHHHHHHHHHH
Confidence 2457899999866 4556665555433
No 342
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.80 E-value=5.4e-05 Score=69.80 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=73.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccE--EEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI--TIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i--ti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
...+.|.++|..|+|||||++.|.+...++...+ .|.- ++......++.++|..|+ +...+ ......|.+|+||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT-~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT-NGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhcccc-CCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 3457899999999999999999999876654332 2311 122334589999999986 55555 4678999999999
Q ss_pred eCCC--CCcccHHH---HHHHHHhcCCCeEEEEEEccCCCC
Q 010060 147 DGSY--GFEMETFE---FLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 147 Das~--g~e~et~e---~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
|++. .|++-..+ ++.-.+...+|..| ..||-|++.
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlI-fankQdllt 133 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLI-FANKQDLLT 133 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceee-hhhhhHHHh
Confidence 9763 23322233 33333445667544 578888763
No 343
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.79 E-value=0.00037 Score=75.41 Aligned_cols=126 Identities=18% Similarity=0.292 Sum_probs=70.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc--c--Ccccc----c---------------cc-cEEEEe-----------cCce
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT--K--HNVPE----V---------------RG-PITIVS-----------GKQR 118 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T--r--~~v~~----~---------------~G-~iti~~-----------~~~~ 118 (519)
+.+|+|+|++||||||++..|..... . ..+.. . .+ ++.... ....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999998888765432 1 11110 0 00 121111 1246
Q ss_pred eEEEEcCCCCch-------hHHHHhh---ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHH
Q 010060 119 RLQFVECPNDIN-------GMIDCAK---IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLR 188 (519)
Q Consensus 119 rl~fIDtPGdl~-------smld~ak---~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~ 188 (519)
.++||||||... .+...+. .-+-++||++++.+.. ...+++..+...++..+ |+||+|.......+.
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~~~v--I~TKlDet~~~G~i~ 377 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPLDGL--IFTKLDETSSLGSIL 377 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCCCEE--EEecccccccccHHH
Confidence 799999998411 1222222 2346788899975432 22345555555565444 599999865333222
Q ss_pred HHHHHHHHhhhhhccCCceEEEEe
Q 010060 189 KTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 189 ~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+ +.. .+.++.|++
T Consensus 378 ~~---~~~-------~~lPv~yit 391 (424)
T PRK05703 378 SL---LIE-------SGLPISYLT 391 (424)
T ss_pred HH---HHH-------HCCCEEEEe
Confidence 22 211 356777776
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.79 E-value=2.6e-05 Score=74.32 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=35.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc-------CccccccccEEEEe---cCceeEEEEcCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK-------HNVPEVRGPITIVS---GKQRRLQFVECPN 127 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-------~~v~~~~G~iti~~---~~~~rl~fIDtPG 127 (519)
+..|+++|.||+|||||||+|++.... ..+...+| +|... .....+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g-tT~~~~~~~~~~~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG-TTLDLIKIPLGNGKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC-eeeeeEEEecCCCCEEEeCcC
Confidence 468999999999999999999986421 12222233 33221 1123689999998
No 345
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.79 E-value=0.0003 Score=73.18 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcccc------CccccccccEEEE--------------ecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTK------HNVPEVRGPITIV--------------SGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr------~~v~~~~G~iti~--------------~~~~~rl~fIDtPGd-- 128 (519)
.+..+.++|||.||+|||||+|+|+..... .++....+.+.+- ..-...++++|..|-
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 455679999999999999999999987311 0111001111110 011245889997652
Q ss_pred -------c-hhHHHHhhccCEEEEEEeCC
Q 010060 129 -------I-NGMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 129 -------l-~smld~ak~ADlVLLVVDas 149 (519)
| +..|+.++.+|.++.|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEec
Confidence 3 35899999999999999986
No 346
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=9.4e-05 Score=68.40 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=90.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCC--CchhHHHH-hhccCEEEEEEeCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPN--DINGMIDC-AKIADLALLLIDGS 149 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPG--dl~smld~-ak~ADlVLLVVDas 149 (519)
...++.++|..|+||+|++.+|---....+.+.+.-.+.-+..++-.+.++|..| .+...+++ ....|.+|+|||.+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDss 96 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSS 96 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEecc
Confidence 3468899999999999976555432111111112122223455777889999876 46667775 57899999999997
Q ss_pred CCC--cccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHH-----HHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 150 YGF--EMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTK-----QRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 150 ~g~--e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~k-----k~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
... .....++..+|+. ++ ..+++++||.|...- ....++. ..|+++. ..+|..||.+|
T Consensus 97 d~dris~a~~el~~mL~E~eLq~-a~llv~anKqD~~~~-~t~~E~~~~L~l~~Lk~r~-------~~Iv~tSA~kg--- 164 (182)
T KOG0072|consen 97 DRDRISIAGVELYSMLQEEELQH-AKLLVFANKQDYSGA-LTRSEVLKMLGLQKLKDRI-------WQIVKTSAVKG--- 164 (182)
T ss_pred chhhhhhhHHHHHHHhccHhhcC-ceEEEEeccccchhh-hhHHHHHHHhChHHHhhhe-------eEEEeeccccc---
Confidence 543 2334578888865 45 456678999997531 1122222 3334333 56899999977
Q ss_pred ChhHHHHHHHHHH
Q 010060 220 SKREIRNLARFIS 232 (519)
Q Consensus 220 ~~~ei~~LlR~I~ 232 (519)
.++...+.++.
T Consensus 165 --~Gld~~~DWL~ 175 (182)
T KOG0072|consen 165 --EGLDPAMDWLQ 175 (182)
T ss_pred --cCCcHHHHHHH
Confidence 44444554443
No 347
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.76 E-value=7.7e-05 Score=79.01 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=52.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc-cC---ccc---cccccEEEEe--------------cCceeEEEEcCCCC-----
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT-KH---NVP---EVRGPITIVS--------------GKQRRLQFVECPND----- 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T-r~---~v~---~~~G~iti~~--------------~~~~rl~fIDtPGd----- 128 (519)
..++|||+||+|||||+|+|++... .. +.. ...|.+.+-. ....++.|+|.||-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6789999999999999999998743 21 111 1123222211 01246899999983
Q ss_pred ----ch-hHHHHhhccCEEEEEEeCC
Q 010060 129 ----IN-GMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 129 ----l~-smld~ak~ADlVLLVVDas 149 (519)
+. .++..++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 22 4889999999999999995
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00037 Score=76.98 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC----cccc-------------------ccc-cEEEEe-----------cCc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVPE-------------------VRG-PITIVS-----------GKQ 117 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~~-------------------~~G-~iti~~-----------~~~ 117 (519)
...+|+|+|++|+||||++..|...+... .+.. ..| ++.... ...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35799999999999999999988643111 1110 001 111111 124
Q ss_pred eeEEEEcCCCCch---------hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHH
Q 010060 118 RRLQFVECPNDIN---------GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLR 188 (519)
Q Consensus 118 ~rl~fIDtPGdl~---------smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~ 188 (519)
..++||||||... ..+..+. ....+||++++.+.... .+++..+...+.. -+|+||+|....-..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl-~eii~~f~~~~~~--gvILTKlDEt~~lG~-- 502 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDL-DEVVRRFAHAKPQ--GVVLTKLDETGRFGS-- 502 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHH-HHHHHHHHhhCCe--EEEEecCcCccchhH--
Confidence 6799999999421 1122222 34567888887654332 2455555443433 347999998643322
Q ss_pred HHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 189 KTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 189 ~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+...+. ..+.+|.|++ .|..++
T Consensus 503 -aLsv~~-------~~~LPI~yvt--~GQ~VP 524 (559)
T PRK12727 503 -ALSVVV-------DHQMPITWVT--DGQRVP 524 (559)
T ss_pred -HHHHHH-------HhCCCEEEEe--CCCCch
Confidence 222221 1256777776 344443
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.75 E-value=5.3e-05 Score=70.01 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=35.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEEEEecCceeEEEEcCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITIVSGKQRRLQFVECPN 127 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti~~~~~~rl~fIDtPG 127 (519)
..+..|+++|.||+|||||+|+|++..... +....| ...+ .....+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~--~~~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEV--KLDNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEE--EecCCEEEEECCC
Confidence 346789999999999999999999863211 111111 1111 1235799999998
No 350
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00045 Score=70.47 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC--ccc----------------cc--cccEEEEe--c--------------C
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----------------EV--RGPITIVS--G--------------K 116 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----------------~~--~G~iti~~--~--------------~ 116 (519)
++..|+++|++|+|||||+..|....... .+. .. ...+.+.. . .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 45799999999999999999887652110 000 00 01122211 0 1
Q ss_pred ceeEEEEcCCCCch-------hHHHHh--hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHH
Q 010060 117 QRRLQFVECPNDIN-------GMIDCA--KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187 (519)
Q Consensus 117 ~~rl~fIDtPGdl~-------smld~a--k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l 187 (519)
+..+++|||||... .+...+ -..|.++||+||+.... +..+++..+...++..+ ++||+|....-..+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~~~~--I~TKlDet~~~G~~ 230 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDGI--VFTKFDETASSGEL 230 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCCCEE--EEEeecCCCCccHH
Confidence 45899999999531 122222 23577899999974332 23345555555666666 58999987644333
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 188 RKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
-.+... .+.|+.|++ +|..+|
T Consensus 231 l~~~~~----------~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 231 LKIPAV----------SSAPIVLMT--DGQDVK 251 (270)
T ss_pred HHHHHH----------HCcCEEEEe--CCCCCC
Confidence 333222 256777776 444455
No 351
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.75 E-value=0.00029 Score=70.30 Aligned_cols=135 Identities=24% Similarity=0.346 Sum_probs=81.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc----ccCcccc--ccc-----cEEEE-e--cCceeEEEEcCCC--C-chh--H
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY----TKHNVPE--VRG-----PITIV-S--GKQRRLQFVECPN--D-ING--M 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~----Tr~~v~~--~~G-----~iti~-~--~~~~rl~fIDtPG--d-l~s--m 132 (519)
+--++|.|||.+|.|||||+|.|.... +...... ++. .+|.+ . +-+-+++++|||| | ++. +
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 556899999999999999999999862 1111110 111 11211 1 2356789999998 2 221 2
Q ss_pred HHH-------------------h-------hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH
Q 010060 133 IDC-------------------A-------KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 133 ld~-------------------a-------k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k 185 (519)
|+- . -....+|+.+.++ ..+.+-+.++|.-|.. +-.||.|+-|.|...- +
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~--vvNvvPVIakaDtlTl-e 200 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE--VVNVVPVIAKADTLTL-E 200 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh--hheeeeeEeecccccH-H
Confidence 221 0 2346788888875 4566677788887643 4467889999998752 2
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.....++.+++.|. ..+..+||-.
T Consensus 201 Er~~FkqrI~~el~---~~~i~vYPq~ 224 (336)
T KOG1547|consen 201 ERSAFKQRIRKELE---KHGIDVYPQD 224 (336)
T ss_pred HHHHHHHHHHHHHH---hcCccccccc
Confidence 23344455544442 2456666643
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.74 E-value=0.00036 Score=76.53 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=72.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc-c---Cccccc-------------------cc-cEEEE-e----------cCc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT-K---HNVPEV-------------------RG-PITIV-S----------GKQ 117 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r---~~v~~~-------------------~G-~iti~-~----------~~~ 117 (519)
.+.+|++||++||||||++..|...+. + ..+..+ .| ++... . -..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 357999999999999999999997641 1 011100 01 11111 0 123
Q ss_pred eeEEEEcCCCCch---hHHHHh-hc-----cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHH
Q 010060 118 RRLQFVECPNDIN---GMIDCA-KI-----ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLR 188 (519)
Q Consensus 118 ~rl~fIDtPGdl~---smld~a-k~-----ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~ 188 (519)
..+++|||+|-.. .+.+.+ .. ..-.+||+|++.+.. ...+++..+...++..+ |+||+|.......+.
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~~~g~--IlTKlDet~~~G~~l 411 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPGLAGC--ILTKLDEAASLGGAL 411 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCCCCEE--EEeCCCCcccchHHH
Confidence 4689999999322 111111 11 223789999975542 22345555555666655 589999865433333
Q ss_pred HHHHHHHHhhhhhccCCceEEEEe
Q 010060 189 KTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 189 ~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+... .+.+|.|++
T Consensus 412 ~i~~~----------~~lPI~yvt 425 (484)
T PRK06995 412 DVVIR----------YKLPLHYVS 425 (484)
T ss_pred HHHHH----------HCCCeEEEe
Confidence 33221 256787877
No 353
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.74 E-value=0.00028 Score=65.55 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred EEEEC-CCCCChHHHHHHHHhccccCccc------ccc-ccEE------------EEecCceeEEEEcCCCCchh-HHHH
Q 010060 77 VVVQG-PPQVGKSLLIKSLIKHYTKHNVP------EVR-GPIT------------IVSGKQRRLQFVECPNDING-MIDC 135 (519)
Q Consensus 77 VaVVG-~pnvGKSTLIn~Ll~~~Tr~~v~------~~~-G~it------------i~~~~~~rl~fIDtPGdl~s-mld~ 135 (519)
|+|++ ..|+||||+.-.|.....+.... ++. +.++ +.......+++||||+.+.. +...
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~~~~~~ 81 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIERGFITA 81 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcHHHHHH
Confidence 45555 56999999988887753221100 010 1111 11111127999999986554 6667
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
+..||.+|++++++..--.....++..+...+.+.+.+|+|+++..
T Consensus 82 l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 82 IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 8899999999998754444455677777777777777789998864
No 354
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=5e-05 Score=79.23 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=38.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE---ecCceeEEEEcCCCCch
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV---SGKQRRLQFVECPNDIN 130 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~---~~~~~rl~fIDtPGdl~ 130 (519)
.....|.|||.||||||||||+|++.... .+...+| +|.. ..-...+.++||||-+.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG-~Tk~~q~i~~~~~i~LlDtPGii~ 189 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPG-TTKGIQWIKLDDGIYLLDTPGIIP 189 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCc-eecceEEEEcCCCeEEecCCCcCC
Confidence 45578999999999999999999997531 1222223 2221 11234599999999543
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.72 E-value=5.6e-05 Score=77.39 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=37.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE--ecCceeEEEEcCCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV--SGKQRRLQFVECPND 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~--~~~~~rl~fIDtPGd 128 (519)
..+..|+|+|.||||||||+|+|++.... .+....|..... ......+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence 45689999999999999999999986311 122222311111 112346899999995
No 356
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.71 E-value=4.9e-05 Score=72.49 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=67.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc-cccCccccccccEEE----EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPITI----VSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~iti----~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
.+.++|+|..++||||+|.+.++. +|+.--..+.-.+.. +.....++.+|||.|. +..+ -.....|...+||
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV 99 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV 99 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence 478999999999999999999964 333211111000000 1223567889999985 3332 2456788899999
Q ss_pred EeCCCCCcc-cHHHHHHHHHh--cCCCeEEEEEEccCCCCCH
Q 010060 146 IDGSYGFEM-ETFEFLNLMQN--HGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 146 VDas~g~e~-et~e~L~~L~~--~GiP~VI~VlNKlDl~~~~ 184 (519)
++.+....- .+.+..+-++. ..+|.|+ |-||+|++.+.
T Consensus 100 FSTTDr~SFea~~~w~~kv~~e~~~IPtV~-vqNKIDlveds 140 (246)
T KOG4252|consen 100 FSTTDRYSFEATLEWYNKVQKETERIPTVF-VQNKIDLVEDS 140 (246)
T ss_pred EecccHHHHHHHHHHHHHHHHHhccCCeEE-eeccchhhHhh
Confidence 988642211 12233333332 4688775 89999998643
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.70 E-value=4.8e-05 Score=77.37 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE--ecCceeEEEEcCCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV--SGKQRRLQFVECPND 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~--~~~~~rl~fIDtPGd 128 (519)
.++..|+|+|.||+|||||+|+|++... ..+....|..... ......+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCCCEEEEECCCc
Confidence 4568999999999999999999997531 1111122211111 111246899999995
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.69 E-value=0.0002 Score=73.29 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=59.8
Q ss_pred CCCchh----HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh
Q 010060 126 PNDING----MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE 201 (519)
Q Consensus 126 PGdl~s----mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e 201 (519)
||++.. +...++.||++|+|+|+..++..+..++...+. +.|.+ +|+||+|+... .......+ ++. +
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~i-iVlNK~DL~~~-~~~~~~~~----~~~-~ 78 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRL-LILNKSDLADP-EVTKKWIE----YFE-E 78 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEE-EEEEchhcCCH-HHHHHHHH----HHH-H
Confidence 787554 566789999999999998887766666666553 67754 68999999742 22222222 221 1
Q ss_pred ccCCceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 202 IYDGAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 202 ~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
.+.+++++||.++ .++..|...|.
T Consensus 79 --~~~~vi~vSa~~~-----~gi~~L~~~l~ 102 (287)
T PRK09563 79 --QGIKALAINAKKG-----QGVKKILKAAK 102 (287)
T ss_pred --cCCeEEEEECCCc-----ccHHHHHHHHH
Confidence 1467899999876 44555554443
No 359
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.69 E-value=0.0004 Score=64.55 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=77.9
Q ss_pred EEEECCCCCChHHHHHHHHhccccCc-cccccc--cEEE--EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeC
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRG--PITI--VSGKQRRLQFVECPND--INGMID-CAKIADLALLLIDG 148 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G--~iti--~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDa 148 (519)
.+|+|-|++|||+|+-+....+-... +.++.- .|.. +.+.+-.+++|||.|. |..|.+ .......+++|.|.
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDV 90 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEEC
Confidence 46899999999999877766531111 111100 1111 1345678899999995 555554 45788999999999
Q ss_pred CCCCccc-HHHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 149 SYGFEME-TFEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 149 s~g~e~e-t~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
+.+-.-. -...|.-++. ..+|.|+ |-||.|.....-...+-. +-| ....+..+|.+||+.+.
T Consensus 91 Tn~ESF~Nv~rWLeei~~ncdsv~~vL-VGNK~d~~~RrvV~t~dA-----r~~-A~~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 91 TNGESFNNVKRWLEEIRNNCDSVPKVL-VGNKNDDPERRVVDTEDA-----RAF-ALQMGIELFETSAKENE 155 (198)
T ss_pred cchhhhHhHHHHHHHHHhcCcccccee-cccCCCCccceeeehHHH-----HHH-HHhcCchheehhhhhcc
Confidence 7542110 1123333332 2567775 899999874211111100 111 12257789999998663
No 360
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.0004 Score=79.68 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc-c---Ccccc-------------------ccc-cEEEEe-----------cCc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT-K---HNVPE-------------------VRG-PITIVS-----------GKQ 117 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r---~~v~~-------------------~~G-~iti~~-----------~~~ 117 (519)
.+.+|++||++|+||||++..|...+. . ..+.. ..| ++.+.. ...
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 457999999999999999999997541 1 11110 011 222111 124
Q ss_pred eeEEEEcCCCCch---hHHH------HhhccCEEEEEEeCCCCCcccHHHHHHHHHhc---CCCeEEEEEEccCCCCCHH
Q 010060 118 RRLQFVECPNDIN---GMID------CAKIADLALLLIDGSYGFEMETFEFLNLMQNH---GLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 118 ~rl~fIDtPGdl~---smld------~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k 185 (519)
..++||||+|-.. .+.+ .....+-++||+|++...+ .-.+++..+... ++..+ |+||+|....-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~gl--IlTKLDEt~~~G 340 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGC--IITKLDEATHLG 340 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEE--EEeccCCCCCcc
Confidence 5799999999311 1222 1233567899999985322 112344444432 45555 589999875444
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+-.+... .+.||.|++
T Consensus 341 ~iL~i~~~----------~~lPI~yit 357 (767)
T PRK14723 341 PALDTVIR----------HRLPVHYVS 357 (767)
T ss_pred HHHHHHHH----------HCCCeEEEe
Confidence 43333322 256777766
No 361
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.65 E-value=3.4e-05 Score=83.57 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=38.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEec--CceeEEEEcCCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSG--KQRRLQFVECPND 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~--~~~rl~fIDtPGd 128 (519)
-..|++||+|||||||+||+|++.- +-.|+..+|....+.. -...+.+.||||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~K-kVsVS~TPGkTKHFQTi~ls~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRK-KVSVSSTPGKTKHFQTIFLSPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCc-eeeeecCCCCcceeEEEEcCCCceecCCCCc
Confidence 4899999999999999999999974 2234444454433311 2346889999994
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.64 E-value=0.00052 Score=73.23 Aligned_cols=111 Identities=21% Similarity=0.378 Sum_probs=69.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc----cCccc---c----------------c-cccEEEEec-----------Cc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT----KHNVP---E----------------V-RGPITIVSG-----------KQ 117 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T----r~~v~---~----------------~-~G~iti~~~-----------~~ 117 (519)
++++|++|||+||||||-+-.|...+. +..+. . + .-|+.++.. ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 478999999999999998888877642 11110 0 0 125555422 35
Q ss_pred eeEEEEcCCCC-------chh---HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHH
Q 010060 118 RRLQFVECPND-------ING---MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187 (519)
Q Consensus 118 ~rl~fIDtPGd-------l~s---mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l 187 (519)
+.++||||.|. +.. .++.. ...-+.||++++.... .-.+++..+...++..+| +||+|-...-..+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~-dlkei~~~f~~~~i~~~I--~TKlDET~s~G~~ 357 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTKYE-DLKEIIKQFSLFPIDGLI--FTKLDETTSLGNL 357 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcchH-HHHHHHHHhccCCcceeE--EEcccccCchhHH
Confidence 68999999983 111 22223 3456778888874332 233666666666777765 8999987644433
No 363
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.62 E-value=0.00037 Score=64.66 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=27.4
Q ss_pred ceeEEEEcCCCCchhHHHHhhccCEEEEEEeCC
Q 010060 117 QRRLQFVECPNDINGMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 117 ~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas 149 (519)
+..++||||+|.-....+.+..||.+|+|+...
T Consensus 91 ~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 91 GFDVIIVETVGVGQSEVDIASMADTTVVVMAPG 123 (148)
T ss_pred CCCEEEEECCccChhhhhHHHhCCEEEEEECCC
Confidence 457899999997666778899999999998775
No 364
>PRK10867 signal recognition particle protein; Provisional
Probab=97.61 E-value=0.00098 Score=72.30 Aligned_cols=108 Identities=23% Similarity=0.326 Sum_probs=60.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC---ccc--c----------------ccccEEEEe---------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH---NVP--E----------------VRGPITIVS--------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---~v~--~----------------~~G~iti~~--------------- 114 (519)
..+|.+|+++|++|+||||++..|....... .+. . ..-.+.++.
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 4568999999999999999777766532110 000 0 000111111
Q ss_pred ----cCceeEEEEcCCCCch--h-HHH------HhhccCEEEEEEeCCCCCcccHHHHHHHHH-hcCCCeEEEEEEccCC
Q 010060 115 ----GKQRRLQFVECPNDIN--G-MID------CAKIADLALLLIDGSYGFEMETFEFLNLMQ-NHGLPRVMGVLTHLDK 180 (519)
Q Consensus 115 ----~~~~rl~fIDtPGdl~--s-mld------~ak~ADlVLLVVDas~g~e~et~e~L~~L~-~~GiP~VI~VlNKlDl 180 (519)
.....+++|||||.+. . ++. .+-..|-++||+|+..+ .+..+.+..+. ..++..+ |+||+|.
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~gi--IlTKlD~ 252 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGV--ILTKLDG 252 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEE--EEeCccC
Confidence 0135689999999532 1 111 12246788999999754 22223333322 2344443 6899996
Q ss_pred CC
Q 010060 181 FK 182 (519)
Q Consensus 181 ~~ 182 (519)
..
T Consensus 253 ~~ 254 (433)
T PRK10867 253 DA 254 (433)
T ss_pred cc
Confidence 54
No 365
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.60 E-value=0.00035 Score=66.59 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=57.2
Q ss_pred chhHHH-HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh-hccCCc
Q 010060 129 INGMID-CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT-EIYDGA 206 (519)
Q Consensus 129 l~smld-~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~-e~~~~~ 206 (519)
+..++. .+..||++|+|+|++.....+..++. ....+.| +++|+||+|+.............++..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 355544 45889999999999865433333442 2234666 456899999975322111121111000001 112234
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
++|++||+++ .++..|...|....+
T Consensus 101 ~i~~vSA~~~-----~gi~eL~~~l~~~l~ 125 (190)
T cd01855 101 DVILISAKKG-----WGVEELINAIKKLAK 125 (190)
T ss_pred cEEEEECCCC-----CCHHHHHHHHHHHhh
Confidence 7999999976 567777777765543
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.60 E-value=0.00013 Score=66.53 Aligned_cols=52 Identities=25% Similarity=0.444 Sum_probs=33.6
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCcccccccc---EEEEecCceeEEEEcCCCCc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP---ITIVSGKQRRLQFVECPNDI 129 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~---iti~~~~~~rl~fIDtPGdl 129 (519)
.++++|.+|+|||||+|+|++.... .+....|. +..+.. ...+.++||||-+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFL-TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEe-CCCEEEEECCCcC
Confidence 8999999999999999999986311 11111121 011111 2368999999953
No 367
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.59 E-value=0.00055 Score=59.72 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=65.7
Q ss_pred EEEECC-CCCChHHHHHHHHhccccC-ccccccccEEEEec---CceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCC
Q 010060 77 VVVQGP-PQVGKSLLIKSLIKHYTKH-NVPEVRGPITIVSG---KQRRLQFVECPNDING-MIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 77 VaVVG~-pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~iti~~~---~~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~ 150 (519)
|+++|. .|+||||+.-.|....... .. .+.++.. ....++++|||+.+.. ....+..||.+|++++++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~-----~~~l~d~d~~~~~D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGR-----RVLLVDLDLQFGDDYVVVDLGRSLDEVSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCC-----cEEEEECCCCCCCCEEEEeCCCCcCHHHHHHHHHcCeEEEEecCCh
Confidence 667665 5999999888888775543 11 1112211 2337999999987665 5667889999999998875
Q ss_pred CCcccHHHHHHHHHhcCCC---eEEEEEEc
Q 010060 151 GFEMETFEFLNLMQNHGLP---RVMGVLTH 177 (519)
Q Consensus 151 g~e~et~e~L~~L~~~GiP---~VI~VlNK 177 (519)
.--.....++..++..+.+ ++.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4444455777777777765 66667874
No 368
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.57 E-value=0.0021 Score=68.98 Aligned_cols=149 Identities=15% Similarity=0.338 Sum_probs=91.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc-------------ccCcccc---------------ccccE--EEEecCceeEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY-------------TKHNVPE---------------VRGPI--TIVSGKQRRLQ 121 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~-------------Tr~~v~~---------------~~G~i--ti~~~~~~rl~ 121 (519)
+.-+-|+||||+-+||||||+++.... +++.++. +.-.+ ++-.+...++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 556899999999999999999998741 1111110 11122 22234567899
Q ss_pred EEcCCCC---------------------chh---HHHHh--------h-ccCEEE-EEEeCCCC-Cccc-----HHHHHH
Q 010060 122 FVECPND---------------------ING---MIDCA--------K-IADLAL-LLIDGSYG-FEME-----TFEFLN 161 (519)
Q Consensus 122 fIDtPGd---------------------l~s---mld~a--------k-~ADlVL-LVVDas~g-~e~e-----t~e~L~ 161 (519)
+|||.|- +.. +-.+| . .+-+-| +--|++.+ +..+ .....+
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9999871 110 11222 1 122322 33366632 2322 336888
Q ss_pred HHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 162 LMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 162 ~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
-|+..|.|.+| +||-.+-.. ....++.+.|...+ +.+|+++++..- ..+++..+++.+-
T Consensus 175 ELk~igKPFvi-llNs~~P~s--~et~~L~~eL~ekY------~vpVlpvnc~~l---~~~DI~~Il~~vL 233 (492)
T PF09547_consen 175 ELKEIGKPFVI-LLNSTKPYS--EETQELAEELEEKY------DVPVLPVNCEQL---REEDITRILEEVL 233 (492)
T ss_pred HHHHhCCCEEE-EEeCCCCCC--HHHHHHHHHHHHHh------CCcEEEeehHHc---CHHHHHHHHHHHH
Confidence 89999999876 688665432 33456677776655 789999998643 6788888885443
No 369
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00076 Score=62.73 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=75.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCccccccccE---EEE-ecCceeEEEEcCCCC-chhHH--HHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI---TIV-SGKQRRLQFVECPND-INGMI--DCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i---ti~-~~~~~rl~fIDtPGd-l~sml--d~ak~ADlVLLVV 146 (519)
..+.|+|...+|||+|+.+-+... |..-+.+..-.+ |++ ..++..++++||.|. ..+.+ ...+.|+..||+.
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 478999999999999998888762 322222211011 233 234568999999995 23333 3468999999999
Q ss_pred eCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCH----HHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 147 DGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDV----KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 147 Das~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~----k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|.+..-.-... .....++. ...| ||+|.||+|+-... +.-+.+.+. + +..+|..||+.+
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~eRvis~e~g~~l~~~----L------GfefFEtSaK~N 168 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSERVISHERGRQLADQ----L------GFEFFETSAKEN 168 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCce-EEEEecccCCccceeeeHHHHHHHHHH----h------ChHHhhhccccc
Confidence 98642110000 11111111 2455 66799999986421 112222222 2 446778888755
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.53 E-value=0.00017 Score=67.41 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHHhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+++++|+.|+|||||++.|++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 6789999999999999999876
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.50 E-value=0.0022 Score=60.07 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=59.8
Q ss_pred EEEEECCCCCChHHHHHHHHhccccC--ccc----c--------------ccccEEEEe-------------------cC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----E--------------VRGPITIVS-------------------GK 116 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----~--------------~~G~iti~~-------------------~~ 116 (519)
+++++|+||+||||++..|....... .+. + ..-.+.+.. ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999988777642000 000 0 000111111 12
Q ss_pred ceeEEEEcCCCCch---hHHHH------hhccCEEEEEEeCCCCCcccHHHHHH-HHHhcCCCeEEEEEEccCCCCCH
Q 010060 117 QRRLQFVECPNDIN---GMIDC------AKIADLALLLIDGSYGFEMETFEFLN-LMQNHGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 117 ~~rl~fIDtPGdl~---smld~------ak~ADlVLLVVDas~g~e~et~e~L~-~L~~~GiP~VI~VlNKlDl~~~~ 184 (519)
...++++||||... ..+.. +...|.++||+|+..+. ...+.+. .++..++-. +|+||+|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~~~~--viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALGITG--VILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCCCCE--EEEECCcCCCCc
Confidence 44689999999632 12221 23489999999996432 2233333 333446433 468999987543
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.48 E-value=8.6e-05 Score=70.16 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+++++|++|||||||||+|++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 799999999999999999999973
No 373
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.45 E-value=0.0018 Score=59.06 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=63.3
Q ss_pred EEEE-CCCCCChHHHHHHHHhccccCccccccccEEEEe------cCceeEEEEcCCCCchh-HHHHhhccCEEEEEEeC
Q 010060 77 VVVQ-GPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS------GKQRRLQFVECPNDING-MIDCAKIADLALLLIDG 148 (519)
Q Consensus 77 VaVV-G~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~------~~~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDa 148 (519)
|++. +.+|+||||+.-.|.......... +.++. .....++++|||+.+.. .+..+..||.+++|+++
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~-----~~~vd~D~~~~~~~yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKR-----VLLLDADLGLANLDYDYIIIDTGAGISDNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCc-----EEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCeEEEEcCC
Confidence 4444 457999999877777654221110 11111 11267999999986665 57789999999999998
Q ss_pred CCCCcccHHHHHHHHHh-cCCCeEEEEEEccCC
Q 010060 149 SYGFEMETFEFLNLMQN-HGLPRVMGVLTHLDK 180 (519)
Q Consensus 149 s~g~e~et~e~L~~L~~-~GiP~VI~VlNKlDl 180 (519)
+..--..+..+++.+.. .+.+.+.+|+|+.+.
T Consensus 77 ~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 77 EPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 74333334556666643 344566678999864
No 374
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.44 E-value=0.0029 Score=59.50 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=49.6
Q ss_pred CceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 116 KQRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
....++++|||+.+.. ++..+..||.+|+++.++..--.....++..++..+.|. .+|+|++|...
T Consensus 91 ~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCc
Confidence 4568999999976554 667778999999999987443334457777777778874 56899999753
No 375
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.42 E-value=0.00065 Score=73.58 Aligned_cols=108 Identities=23% Similarity=0.318 Sum_probs=61.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc-c--Cccc-------------------cccc-cEEEEe-------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT-K--HNVP-------------------EVRG-PITIVS------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r--~~v~-------------------~~~G-~iti~~------------- 114 (519)
..+|.+|.++|++|+||||++-.|..... + ..+. ...| ++....
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 35688999999999999998766654411 0 0000 0000 111100
Q ss_pred ----cCceeEEEEcCCCCch--h-HHH------HhhccCEEEEEEeCCCCCcccHHHHHHHHH-hcCCCeEEEEEEccCC
Q 010060 115 ----GKQRRLQFVECPNDIN--G-MID------CAKIADLALLLIDGSYGFEMETFEFLNLMQ-NHGLPRVMGVLTHLDK 180 (519)
Q Consensus 115 ----~~~~rl~fIDtPGdl~--s-mld------~ak~ADlVLLVVDas~g~e~et~e~L~~L~-~~GiP~VI~VlNKlDl 180 (519)
.....++++||||.+. . +++ .+-..|-++||+|+..+. +..+....+. ..++..+ |+||+|.
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~~~v~i~gi--IlTKlD~ 251 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFNERLGLTGV--VLTKLDG 251 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHHhhCCCCEE--EEeCccC
Confidence 1234689999999432 1 121 133478899999997542 2233333332 3455554 5999996
Q ss_pred CC
Q 010060 181 FK 182 (519)
Q Consensus 181 ~~ 182 (519)
..
T Consensus 252 ~~ 253 (428)
T TIGR00959 252 DA 253 (428)
T ss_pred cc
Confidence 53
No 376
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.42 E-value=0.0003 Score=66.15 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEE---EEecCceeEEEEcCCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT---IVSGKQRRLQFVECPND 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it---i~~~~~~rl~fIDtPGd 128 (519)
+.+..|+++|.+|+|||||+|+|++..-- .+....|..+ .+.. ...+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~-~~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKI-SPGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEe-cCCEEEEECCCC
Confidence 34578999999999999999999985311 1111112111 1111 257899999994
No 377
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.41 E-value=0.00013 Score=76.92 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=40.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEe--cCceeEEEEcCCCC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS--GKQRRLQFVECPND 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~--~~~~rl~fIDtPGd 128 (519)
+.+.+-|++||+||+|||++||.|.... -..+..+.|-..+.. .--+++.+|||||-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~Kk-VCkvAPIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKK-VCKVAPIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcc-cccccCCCCcchHHHHHHHHhceeEecCCCc
Confidence 4566899999999999999999998863 122333445433432 23578999999994
No 378
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.39 E-value=0.0052 Score=57.65 Aligned_cols=135 Identities=18% Similarity=0.246 Sum_probs=79.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc-ccCc--cccccccEE-EE---ecCceeEEEEcCCCCch---h-HHHHhhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY-TKHN--VPEVRGPIT-IV---SGKQRRLQFVECPNDIN---G-MIDCAKIA 139 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~--v~~~~G~it-i~---~~~~~rl~fIDtPGdl~---s-mld~ak~A 139 (519)
-+....|+|+|.-++|||.++..|+... +... ..++...+. .+ .+-+..+.|.||.|--. . ---++..|
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 3556789999999999999998887642 1110 111111111 11 12356788999988311 1 23457899
Q ss_pred CEEEEEEeCCCCCcccHHHHHHHHHh--------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 140 DLALLLIDGSYGFEMETFEFLNLMQN--------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~e~L~~L~~--------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
|..+||.|... .+.+.-+..|+. .-+| |+++.|+.|+..+...-.++... |.. -...+++.+
T Consensus 86 DafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~d~A~~-----Wa~-rEkvkl~eV 155 (198)
T KOG3883|consen 86 DAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDMDVAQI-----WAK-REKVKLWEV 155 (198)
T ss_pred ceEEEEecCCC---HHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCHHHHHH-----HHh-hhheeEEEE
Confidence 99999998753 345544444442 2355 55578999997543222222222 211 145678899
Q ss_pred eccc
Q 010060 212 SGLI 215 (519)
Q Consensus 212 SAl~ 215 (519)
+|..
T Consensus 156 ta~d 159 (198)
T KOG3883|consen 156 TAMD 159 (198)
T ss_pred Eecc
Confidence 9863
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=97.34 E-value=0.00019 Score=75.75 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+++|+|.||||||||||+|++.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccc
Confidence 46899999999999999999986
No 380
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.31 E-value=0.00058 Score=64.86 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=65.3
Q ss_pred EEEEECCCCCChHHHHHHHHh-ccccCc------------------------cccc-cccEEEE-------------ecC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIK-HYTKHN------------------------VPEV-RGPITIV-------------SGK 116 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~-~~Tr~~------------------------v~~~-~G~iti~-------------~~~ 116 (519)
++.|.|+.|+||||||+.|+. ...... +... .|.+... ...
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 678999999999999999994 210000 0000 1111000 012
Q ss_pred --ceeEEEEcCCCC--chhH------HHHhhccCEEEEEEeCCCCCcccHH--HHHHHHHhcCCCeEEEEEEccCCCCCH
Q 010060 117 --QRRLQFVECPND--INGM------IDCAKIADLALLLIDGSYGFEMETF--EFLNLMQNHGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 117 --~~rl~fIDtPGd--l~sm------ld~ak~ADlVLLVVDas~g~e~et~--e~L~~L~~~GiP~VI~VlNKlDl~~~~ 184 (519)
....+||++.|- ...+ +...-..+.++.|+|+..-...... .+...+ ....+| |+||+|++...
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~ADvI-vlnK~D~~~~~ 157 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFADVI-VLNKIDLVSDE 157 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-SEE-EEE-GGGHHHH
T ss_pred CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcCEE-EEeccccCChh
Confidence 347889999883 2222 1223446889999999542111111 222222 334455 79999998643
Q ss_pred HHHHHHHHHHHHhhhhhccCCceEE
Q 010060 185 KKLRKTKQRLKHRFWTEIYDGAKLF 209 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~~~kVf 209 (519)
..+..+.+.+++ +.+.++++
T Consensus 158 ~~i~~~~~~ir~-----lnp~a~Iv 177 (178)
T PF02492_consen 158 QKIERVREMIRE-----LNPKAPIV 177 (178)
T ss_dssp --HHHHHHHHHH-----H-TTSEEE
T ss_pred hHHHHHHHHHHH-----HCCCCEEe
Confidence 233555555443 34667765
No 381
>PRK00098 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.0014 Score=67.65 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=53.4
Q ss_pred HhhccCEEEEEEeCCCCC-ccc-HHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 135 CAKIADLALLLIDGSYGF-EME-TFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~-e~e-t~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+..+|++|+|+|+..+. ... ...+|..+...++|.+| |+||+|+..+........+.+. . .+.++|++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iI-VlNK~DL~~~~~~~~~~~~~~~-----~--~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPII-VLNKIDLLDDLEEARELLALYR-----A--IGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEEhHHcCCCHHHHHHHHHHHH-----H--CCCeEEEEe
Confidence 368999999999996542 222 23566666778898664 8999999743332222222211 1 145899999
Q ss_pred cccCCcCChhHHHHHHHHH
Q 010060 213 GLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I 231 (519)
|+++ .++..|...|
T Consensus 149 A~~g-----~gi~~L~~~l 162 (298)
T PRK00098 149 AKEG-----EGLDELKPLL 162 (298)
T ss_pred CCCC-----ccHHHHHhhc
Confidence 9876 4566665544
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00035 Score=73.84 Aligned_cols=23 Identities=52% Similarity=0.720 Sum_probs=21.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+++|+|++|||||||||+|++.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCc
Confidence 46899999999999999999976
No 383
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.27 E-value=0.0018 Score=53.05 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=49.4
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchh-H---HHHhhccCEEEEEEeCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDING-M---IDCAKIADLALLLIDGSYG 151 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~s-m---ld~ak~ADlVLLVVDas~g 151 (519)
++++.|.+|+||||+...|.....+... .+.++. .++++|+|+.+.. . ...+..+|.+++++++...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~-----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGK-----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC-----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 3678899999999999999887643211 111222 7999999987655 2 5678899999999988643
No 384
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.26 E-value=0.00058 Score=62.79 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=35.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEE-E--ecCceeEEEEcCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI-V--SGKQRRLQFVECPN 127 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti-~--~~~~~rl~fIDtPG 127 (519)
..+..|+++|.+|+|||||+|+|.+.... .+....| +|. . ......+.++||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~-~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPG-YTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCC-eeeeeEEEEcCCCEEEEECcC
Confidence 34578899999999999999999975321 1111223 222 1 11234789999998
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=97.24 E-value=0.00035 Score=74.13 Aligned_cols=56 Identities=29% Similarity=0.266 Sum_probs=35.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC--c--cccccccEEEE-e--cCceeEEEEcCCCCch
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH--N--VPEVRGPITIV-S--GKQRRLQFVECPNDIN 130 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~--v~~~~G~iti~-~--~~~~rl~fIDtPGdl~ 130 (519)
...|.|||.||||||||||+|++..+.. . +...+| +|.. . .......++||||-+.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pG-TT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPG-TTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCC-ccceeEEEEcCCCcEEEECCCccc
Confidence 3589999999999999999999764211 1 122233 2221 1 1123358999999644
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.0018 Score=68.51 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=54.9
Q ss_pred HhhccCEEEEEEeCCCC-CcccH-HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 135 CAKIADLALLLIDGSYG-FEMET-FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g-~e~et-~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.+..+|.+|+|+|+..+ +.... ..+|..+...++|.+ +|+||+|++.+. .+....+.+. . .+.++|++|
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~I-LVlNK~DLv~~~-~~~~~~~~~~----~---~g~~v~~iS 156 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIV-LCLNKADLVSPT-EQQQWQDRLQ----Q---WGYQPLFIS 156 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEEEchhcCChH-HHHHHHHHHH----h---cCCeEEEEE
Confidence 47889999999999743 33322 356666666788865 589999998532 2322222221 1 245799999
Q ss_pred cccCCcCChhHHHHHHHHHH
Q 010060 213 GLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~ 232 (519)
|+++ .++..|...|.
T Consensus 157 A~tg-----~GI~eL~~~L~ 171 (352)
T PRK12289 157 VETG-----IGLEALLEQLR 171 (352)
T ss_pred cCCC-----CCHHHHhhhhc
Confidence 9976 56666666653
No 387
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0009 Score=70.74 Aligned_cols=130 Identities=25% Similarity=0.283 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhcCCccCCc-CCCCCCeEEEEECCCCCChHHHHHHHHhcccc-------------------------
Q 010060 47 RLQSRAVEKEQRRLHIPTIDRS-YGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTK------------------------- 100 (519)
Q Consensus 47 R~~rr~~~r~~Kr~~v~~~~R~-~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr------------------------- 100 (519)
|..+..--.+--++.-|...-. +....|-+|.+||+-|+||||.+-.|...+-+
T Consensus 73 r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA 152 (483)
T KOG0780|consen 73 RIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNA 152 (483)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHh
Confidence 3333333333334333433332 45677889999999999999998888765311
Q ss_pred --CccccccccEEEE-------------ecCceeEEEEcCCCC-------chhHHHHhh--ccCEEEEEEeCCCCCcccH
Q 010060 101 --HNVPEVRGPITIV-------------SGKQRRLQFVECPND-------INGMIDCAK--IADLALLLIDGSYGFEMET 156 (519)
Q Consensus 101 --~~v~~~~G~iti~-------------~~~~~rl~fIDtPGd-------l~smld~ak--~ADlVLLVVDas~g~e~et 156 (519)
..++. -|.+|-. ...+..++++||.|. +..|++..+ ..|.+|||+||+-|...+.
T Consensus 153 ~k~~iP~-ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 153 TKARVPF-YGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred HhhCCee-EecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 11110 0111111 123567999999993 344666543 4799999999997765432
Q ss_pred H--HHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 157 F--EFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 157 ~--e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
+ .|- ..-++-.+ ++||+|-..
T Consensus 232 Qa~aFk---~~vdvg~v--IlTKlDGha 254 (483)
T KOG0780|consen 232 QARAFK---ETVDVGAV--ILTKLDGHA 254 (483)
T ss_pred HHHHHH---HhhccceE--EEEecccCC
Confidence 2 222 22456655 489999754
No 388
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.22 E-value=0.00018 Score=65.69 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=73.4
Q ss_pred EECCCCCChHHHHHHHHh-ccccCc-ccc----ccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCC
Q 010060 79 VQGPPQVGKSLLIKSLIK-HYTKHN-VPE----VRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDGS 149 (519)
Q Consensus 79 VVG~pnvGKSTLIn~Ll~-~~Tr~~-v~~----~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas 149 (519)
++|-+.+|||.|+=+.-. .+-..+ +++ .+..+--+...+..+++|||.|. |.+ +-.....||.+|||.|..
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 678999999986422111 110001 111 11111122345778999999995 666 445678999999999986
Q ss_pred CCCccc-HHHHHHHHHhcCC--CeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 150 YGFEME-TFEFLNLMQNHGL--PRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 150 ~g~e~e-t~e~L~~L~~~Gi--P~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..-.-+ -...|+.+...+. -.++++-||+|+........+--+.|.+.+ +.|++.+||++|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y------~ipfmetsaktg 145 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY------GIPFMETSAKTG 145 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH------CCCceecccccc
Confidence 432211 1223333332221 135567899999642221122223333323 678899999988
No 389
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.22 E-value=0.0034 Score=65.48 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=69.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc------------c------------ccc-cccEEEEec--------------
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN------------V------------PEV-RGPITIVSG-------------- 115 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~------------v------------~~~-~G~iti~~~-------------- 115 (519)
++..|.|+-|+|||||+|.|+....... + ... .|-++....
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~ 84 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHH
Confidence 5778899999999999999997521100 0 000 121111100
Q ss_pred ----CceeEEEEcCCCC--chhHHHHh---------hccCEEEEEEeCCCCCccc-HH-HHHHHHHhcCCCeEEEEEEcc
Q 010060 116 ----KQRRLQFVECPND--INGMIDCA---------KIADLALLLIDGSYGFEME-TF-EFLNLMQNHGLPRVMGVLTHL 178 (519)
Q Consensus 116 ----~~~rl~fIDtPGd--l~smld~a---------k~ADlVLLVVDas~g~e~e-t~-e~L~~L~~~GiP~VI~VlNKl 178 (519)
.....++|+|.|- ...++..+ -..|.++.|+|+....... .. .+..-+ ...-+| |+||+
T Consensus 85 ~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi---~~AD~I-vlnK~ 160 (318)
T PRK11537 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV---GYADRI-LLTKT 160 (318)
T ss_pred hccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH---HhCCEE-EEecc
Confidence 0245789999884 33333332 1347899999997432211 11 222222 222354 79999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 179 DKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 179 Dl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
|++... ..+.+.++ .+.+.++++..+
T Consensus 161 Dl~~~~---~~~~~~l~-----~lnp~a~i~~~~ 186 (318)
T PRK11537 161 DVAGEA---EKLRERLA-----RINARAPVYTVV 186 (318)
T ss_pred ccCCHH---HHHHHHHH-----HhCCCCEEEEec
Confidence 998632 33444443 345788888754
No 390
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.20 E-value=0.003 Score=63.39 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=54.3
Q ss_pred HhhccCEEEEEEeCCCCC-ccc-HHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 135 CAKIADLALLLIDGSYGF-EME-TFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~-e~e-t~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.++.+|.+++|+|+..+. ... ...+|..+...++|.+| |+||+|+........+..+. +. . .+.++|.+|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vI-V~NK~DL~~~~~~~~~~~~~----~~-~--~g~~v~~~S 104 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPII-VLNKIDLLDDEDMEKEQLDI----YR-N--IGYQVLMTS 104 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECcccCCCHHHHHHHHHH----HH-H--CCCeEEEEe
Confidence 578999999999997543 222 22455566667888654 89999997533221122222 21 1 356899999
Q ss_pred cccCCcCChhHHHHHHHHHH
Q 010060 213 GLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~ 232 (519)
|+++ .++..|...+.
T Consensus 105 Aktg-----~gi~eLf~~l~ 119 (245)
T TIGR00157 105 SKNQ-----DGLKELIEALQ 119 (245)
T ss_pred cCCc-----hhHHHHHhhhc
Confidence 9976 56666665543
No 391
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.20 E-value=0.00042 Score=69.48 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...++++|++|||||||||+|++..
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhh
Confidence 3589999999999999999999863
No 392
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.006 Score=56.36 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=80.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhc----cccCccccccc-cEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH----YTKHNVPEVRG-PITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~----~Tr~~v~~~~G-~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVV 146 (519)
....|+|.-|+|||.|+..++.. ...+.+...-| .|.-+++.+..+++|||.|. |.. +......|-.+|+|.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy 91 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence 45678999999999998877764 12233322222 12224667889999999995 555 445667888899999
Q ss_pred eCCCCCcccHHHHHH----HHHhcCCC--eEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 147 DGSYGFEMETFEFLN----LMQNHGLP--RVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 147 Das~g~e~et~e~L~----~L~~~GiP--~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|.+.. .+..+|+ -.+..--| .++++-||.|+-..... ..+.+. |..+ .+.-++..||++|.
T Consensus 92 ditrr---stynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~-----faee--ngl~fle~saktg~ 159 (215)
T KOG0097|consen 92 DITRR---STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKE-----FAEE--NGLMFLEASAKTGQ 159 (215)
T ss_pred Eehhh---hhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHH-----HHhh--cCeEEEEecccccC
Confidence 98643 2343333 22333334 45556799998642211 222222 1111 45567788999884
No 393
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.18 E-value=0.00042 Score=73.36 Aligned_cols=53 Identities=26% Similarity=0.269 Sum_probs=34.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc----CccccccccEEEE--e-cCceeEEEEcCCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK----HNVPEVRGPITIV--S-GKQRRLQFVECPND 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr----~~v~~~~G~iti~--~-~~~~rl~fIDtPGd 128 (519)
..|++||.+|||||||+|+|++.... ..+...+| .|.. . .....+.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pg-tT~~~~~~~~~~~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPG-TTLDLIEIPLDDGHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCC-eEeeEEEEEeCCCCEEEECCCC
Confidence 58999999999999999999986421 11222223 2221 1 11245789999994
No 394
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.0023 Score=67.67 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=58.8
Q ss_pred hhccCEEEEEEeCCCCCcccHH-HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 136 AKIADLALLLIDGSYGFEMETF-EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~-e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
+..+|.+++|+++...+..... .+|..+...|++.+| |+||+|++.+.. ...+.+.. +..+.++|++|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piI-VLNK~DL~~~~~---~~~~~~~~-----~~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVI-VLTKADLCEDAE---EKIAEVEA-----LAPGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEE-EEEChhcCCCHH---HHHHHHHH-----hCCCCcEEEEECC
Confidence 6789999999999877776433 688888889999765 899999986421 22222222 2356899999998
Q ss_pred cCCcCChhHHHHHHHHH
Q 010060 215 IHGKYSKREIRNLARFI 231 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I 231 (519)
++ .++..|..+|
T Consensus 181 ~g-----~gl~~L~~~L 192 (356)
T PRK01889 181 DG-----EGLDVLAAWL 192 (356)
T ss_pred CC-----ccHHHHHHHh
Confidence 76 4566666665
No 395
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.00068 Score=63.71 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=77.6
Q ss_pred EEEECCCCCChHHHHHHHHhc-cccCccccc----cccEEEE--ec-------CceeEEEEcCCCC--chhH-HHHhhcc
Q 010060 77 VVVQGPPQVGKSLLIKSLIKH-YTKHNVPEV----RGPITIV--SG-------KQRRLQFVECPND--INGM-IDCAKIA 139 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~----~G~iti~--~~-------~~~rl~fIDtPGd--l~sm-ld~ak~A 139 (519)
...+|-+|||||+++...+.. ++.+-++++ +..-.+. .+ .+..+++|||.|. |.++ -.....|
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDA 91 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDA 91 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhh
Confidence 456899999999976443322 111111111 0000011 11 1335789999995 5563 3345677
Q ss_pred CEEEEEEeCCCCCc-ccHHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 140 DLALLLIDGSYGFE-METFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 140 DlVLLVVDas~g~e-~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
=..||++|.+..-. ......|+.|+.| --|-||++-||.|+......-.+....|...+ +.|.|.+||-+
T Consensus 92 MGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky------glPYfETSA~t 165 (219)
T KOG0081|consen 92 MGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY------GLPYFETSACT 165 (219)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh------CCCeeeecccc
Confidence 77888999864211 1233566667665 35788889999999743222222333444433 78899999998
Q ss_pred CC
Q 010060 216 HG 217 (519)
Q Consensus 216 g~ 217 (519)
|.
T Consensus 166 g~ 167 (219)
T KOG0081|consen 166 GT 167 (219)
T ss_pred Cc
Confidence 84
No 396
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.12 E-value=0.0044 Score=65.25 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
++..|.|+-|+|||||+|.|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 46788899999999999999975
No 397
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.11 E-value=0.00046 Score=73.06 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE--ecCceeEEEEcCCCC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV--SGKQRRLQFVECPND 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~--~~~~~rl~fIDtPGd 128 (519)
-...++|+|||+||+||||+||+|...-. ..+....|-.+.. ......+.|+|+||-
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccCCceeccCCce
Confidence 46789999999999999999999998632 2222222311111 123567999999995
No 398
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.08 E-value=0.0013 Score=61.88 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=83.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc-cccCccccccccE---EE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPI---TI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLV 145 (519)
.+.|+++|-.=||||+|+=+.+.. +.-..+++....+ ++ +...+..+.+|||.|. |+++=. ....++.+|||
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV 92 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV 92 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence 478899999999999998777654 2111121111100 01 1234567899999995 443211 35789999999
Q ss_pred EeCCCC--CcccHHHHHHHHHhcCCC-eEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 146 IDGSYG--FEMETFEFLNLMQNHGLP-RVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 146 VDas~g--~e~et~e~L~~L~~~GiP-~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
.|.+.. |+.-.-.++.+-+..|-. -+++|-||+|+-+.... ..+....+. -..++..+.+||+.+ .
T Consensus 93 yDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V---t~qeAe~YA---esvGA~y~eTSAk~N-----~ 161 (218)
T KOG0088|consen 93 YDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV---TRQEAEAYA---ESVGALYMETSAKDN-----V 161 (218)
T ss_pred EeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh---hHHHHHHHH---Hhhchhheecccccc-----c
Confidence 998743 221111222222223433 35558899999642211 111111111 124778889999865 4
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..|...++..
T Consensus 162 Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 162 GISELFESLTAK 173 (218)
T ss_pred CHHHHHHHHHHH
Confidence 566666544443
No 399
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.0038 Score=65.12 Aligned_cols=127 Identities=22% Similarity=0.334 Sum_probs=75.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcccc--------------------ccccEEEEe----------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE--------------------VRGPITIVS---------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~--------------------~~G~iti~~---------------- 114 (519)
+..|.+|.+||-.|+||||-|..|...+....... .+-++.++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 56689999999999999999999887632111000 011122221
Q ss_pred ---cCceeEEEEcCCCCch----------hHHHHhhccCE-----EEEEEeCCCCCcccHH--HHHHHHHhcCCCeEEEE
Q 010060 115 ---GKQRRLQFVECPNDIN----------GMIDCAKIADL-----ALLLIDGSYGFEMETF--EFLNLMQNHGLPRVMGV 174 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~----------smld~ak~ADl-----VLLVVDas~g~e~et~--e~L~~L~~~GiP~VI~V 174 (519)
..+..++++||.|-++ .+.+.++-.+. +++++||+.|-..-.+ .|-. +.++.-+ |
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~e---av~l~Gi--I 290 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNE---AVGLDGI--I 290 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHH---hcCCceE--E
Confidence 1246799999999543 23334454555 8889999877543221 2222 2466655 5
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 175 LTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 175 lNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+||+|-...-..+-.+...+ +.||.++.
T Consensus 291 lTKlDgtAKGG~il~I~~~l----------~~PI~fiG 318 (340)
T COG0552 291 LTKLDGTAKGGIILSIAYEL----------GIPIKFIG 318 (340)
T ss_pred EEecccCCCcceeeeHHHHh----------CCCEEEEe
Confidence 89999654333333333332 56777765
No 400
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.04 E-value=0.0025 Score=67.44 Aligned_cols=98 Identities=18% Similarity=0.119 Sum_probs=59.0
Q ss_pred CchhHHHHh-hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc
Q 010060 128 DINGMIDCA-KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 128 dl~smld~a-k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
++..++..+ ..+|++++|+|+.........++...+. +.| +++|+||+|+.........+.+.+++++........
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~ 128 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--GNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--CCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 355666655 6889999999996543333345554432 455 667999999975332233444444433322212223
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
.+|.+||+++ .++..+...|..
T Consensus 129 ~i~~vSAk~g-----~gv~eL~~~l~~ 150 (360)
T TIGR03597 129 DIILVSAKKG-----NGIDELLDKIKK 150 (360)
T ss_pred cEEEecCCCC-----CCHHHHHHHHHH
Confidence 6899999977 456666666643
No 401
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.04 E-value=0.0052 Score=64.35 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=74.9
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc------------------Ccccc--------ccccEEEE-------------e-c
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK------------------HNVPE--------VRGPITIV-------------S-G 115 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr------------------~~v~~--------~~G~iti~-------------~-~ 115 (519)
+..|-|+=|+|||||+|.|+....- ..+.. ..|-++.. . .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 5567788899999999999986210 11110 12322222 0 1
Q ss_pred CceeEEEEcCCCC--chhHHH---------HhhccCEEEEEEeCCCCCcccHHHHHHHHHh-cCCCeEEEEEEccCCCCC
Q 010060 116 KQRRLQFVECPND--INGMID---------CAKIADLALLLIDGSYGFEMETFEFLNLMQN-HGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~smld---------~ak~ADlVLLVVDas~g~e~et~e~L~~L~~-~GiP~VI~VlNKlDl~~~ 183 (519)
.+...++|+|.|- -...+. ..-.-|.++-||||....+... .+-..+.. ..+.-+| |+||.|++.+
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~-~~~~~~~~Qia~AD~i-vlNK~Dlv~~ 160 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLD-AIAELAEDQLAFADVI-VLNKTDLVDA 160 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHH-HHHHHHHHHHHhCcEE-EEecccCCCH
Confidence 2345789999883 111111 1234577999999975433221 11111211 1334454 7999999975
Q ss_pred HHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 184 VKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
. .+..+.+.++ ...+.++++.+|.
T Consensus 161 ~-~l~~l~~~l~-----~lnp~A~i~~~~~ 184 (323)
T COG0523 161 E-ELEALEARLR-----KLNPRARIIETSY 184 (323)
T ss_pred H-HHHHHHHHHH-----HhCCCCeEEEccc
Confidence 4 4566555554 3458899998874
No 402
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.02 E-value=0.003 Score=64.78 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=53.0
Q ss_pred hhccCEEEEEEeCCCCC-cccH-HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 136 AKIADLALLLIDGSYGF-EMET-FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~-e~et-~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
+..+|++|+|+|+..+. .... ..+|..+...++|.+ +|+||+|+..+... .. ... .+. ..+.++|++||
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~i-IVlNK~DL~~~~~~-~~-~~~---~~~---~~g~~v~~vSA 146 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPV-IVLTKADLLDDEEE-EL-ELV---EAL---ALGYPVLAVSA 146 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEE-EEEEHHHCCChHHH-HH-HHH---HHH---hCCCeEEEEEC
Confidence 67899999999998765 3332 246666777888855 58999999754211 11 111 111 13568999999
Q ss_pred ccCCcCChhHHHHHHHHH
Q 010060 214 LIHGKYSKREIRNLARFI 231 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I 231 (519)
+++ ..+..|...|
T Consensus 147 ~~g-----~gi~~L~~~L 159 (287)
T cd01854 147 KTG-----EGLDELREYL 159 (287)
T ss_pred CCC-----ccHHHHHhhh
Confidence 876 4555555544
No 403
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.01 E-value=0.0048 Score=52.76 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=49.8
Q ss_pred EEEEECC-CCCChHHHHHHHHhccccCccccccccEEEE-ecCceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCC
Q 010060 76 VVVVQGP-PQVGKSLLIKSLIKHYTKHNVPEVRGPITIV-SGKQRRLQFVECPNDING-MIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 76 ~VaVVG~-pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~-~~~~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~ 150 (519)
+|+|+|. .|+||||+...|.....+.. .++.++ ......++++|||+.+.. ....+..||.++++++++.
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~-----~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRG-----KRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCC-----CcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCH
Confidence 3677875 59999999888887654321 122233 223468999999987665 5577889999999998863
No 404
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0034 Score=67.53 Aligned_cols=108 Identities=24% Similarity=0.371 Sum_probs=65.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc---------------------------cccc-----cccEEEE-----
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN---------------------------VPEV-----RGPITIV----- 113 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---------------------------v~~~-----~G~iti~----- 113 (519)
..+|-+|.+||+-|+||||.+..|...+.+.. +... ..|+.+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 46789999999999999999888887531110 0000 0011111
Q ss_pred --ecCceeEEEEcCCCCch--h-HHH------HhhccCEEEEEEeCCCCCcccHHHHHHHH-HhcCCCeEEEEEEccCCC
Q 010060 114 --SGKQRRLQFVECPNDIN--G-MID------CAKIADLALLLIDGSYGFEMETFEFLNLM-QNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 114 --~~~~~rl~fIDtPGdl~--s-mld------~ak~ADlVLLVVDas~g~e~et~e~L~~L-~~~GiP~VI~VlNKlDl~ 181 (519)
-.....+++|||.|-+. . +++ .+-..|=+|||+||..|-+... ....+ .+.++..| |+||+|.-
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~--~A~aF~e~l~itGv--IlTKlDGd 252 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN--TAKAFNEALGITGV--ILTKLDGD 252 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH--HHHHHhhhcCCceE--EEEcccCC
Confidence 01234799999999432 2 222 3456799999999987754321 11111 22466665 58999985
Q ss_pred C
Q 010060 182 K 182 (519)
Q Consensus 182 ~ 182 (519)
.
T Consensus 253 a 253 (451)
T COG0541 253 A 253 (451)
T ss_pred C
Confidence 4
No 405
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.99 E-value=0.0018 Score=63.76 Aligned_cols=66 Identities=21% Similarity=0.478 Sum_probs=43.2
Q ss_pred ceeEEEEcCCCCch---------hHHHHhhccC---EEEEEEeCCCCCcccHH--HHHHHH---HhcCCCeEEEEEEccC
Q 010060 117 QRRLQFVECPNDIN---------GMIDCAKIAD---LALLLIDGSYGFEMETF--EFLNLM---QNHGLPRVMGVLTHLD 179 (519)
Q Consensus 117 ~~rl~fIDtPGdl~---------smld~ak~AD---lVLLVVDas~g~e~et~--e~L~~L---~~~GiP~VI~VlNKlD 179 (519)
...+.++||||.+. ..++.++.-+ .+++++|+.+-++...+ -+|..+ ...-+|.| -|++|+|
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~I-NvlsKMD 175 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHI-NVLSKMD 175 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcch-hhhhHHH
Confidence 34689999999532 4566666533 47788888755444333 233333 34678966 5899999
Q ss_pred CCCC
Q 010060 180 KFKD 183 (519)
Q Consensus 180 l~~~ 183 (519)
++++
T Consensus 176 Llk~ 179 (273)
T KOG1534|consen 176 LLKD 179 (273)
T ss_pred Hhhh
Confidence 9964
No 406
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.96 E-value=0.00071 Score=69.73 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-++.+.+++|++|||||||+|+|....
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchh
Confidence 355799999999999999999999863
No 407
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.95 E-value=0.002 Score=62.79 Aligned_cols=139 Identities=22% Similarity=0.194 Sum_probs=78.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc-ccCccccccccE--EE-E-ecCceeEEEEcCCCC--chhHHH--HhhccCEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVRGPI--TI-V-SGKQRRLQFVECPND--INGMID--CAKIADLALL 144 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~G~i--ti-~-~~~~~rl~fIDtPGd--l~smld--~ak~ADlVLL 144 (519)
.+.++|||...+|||.|+-+..... ...-+.++-..+ .+ + .+....+.+|||.|. +.. +. ....+|++|+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr-lRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR-LRPLSYPQTDVFLL 82 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc-ccccCCCCCCEEEE
Confidence 4688999999999999876555431 111122211111 12 2 255667899999994 444 22 4578899998
Q ss_pred EEeCCCCCccc------HHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHH-------HHhhhhhccCCceEEEE
Q 010060 145 LIDGSYGFEME------TFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRL-------KHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 145 VVDas~g~e~e------t~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~L-------k~~f~~e~~~~~kVf~l 211 (519)
.++...+..-+ -.|+...+ .+.| +|+|.+|.|+..+...++++...= .-.-.....+-.+.+-+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vp-iiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVP-IILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCC-EEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 88876443221 11333322 4677 566899999985543332222110 00000111244678899
Q ss_pred ecccC
Q 010060 212 SGLIH 216 (519)
Q Consensus 212 SAl~g 216 (519)
||+++
T Consensus 160 Sa~tq 164 (198)
T KOG0393|consen 160 SALTQ 164 (198)
T ss_pred hhhhh
Confidence 99876
No 408
>PRK13796 GTPase YqeH; Provisional
Probab=96.94 E-value=0.0038 Score=66.24 Aligned_cols=98 Identities=16% Similarity=0.039 Sum_probs=58.3
Q ss_pred CchhHHHHhhccC-EEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc
Q 010060 128 DINGMIDCAKIAD-LALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 128 dl~smld~ak~AD-lVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
++..++..+..+| +|++|||+.........++...+ .+.| +++|+||+|+.........+.+.+..++....+...
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~ 134 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPV 134 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcC
Confidence 4667888888777 99999999753322222333332 2556 556999999975322222333333333222122334
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
.+|.+||+++ .++..|...|..
T Consensus 135 ~v~~vSAk~g-----~gI~eL~~~I~~ 156 (365)
T PRK13796 135 DVVLISAQKG-----HGIDELLEAIEK 156 (365)
T ss_pred cEEEEECCCC-----CCHHHHHHHHHH
Confidence 7899999976 456666666644
No 409
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.93 E-value=0.015 Score=57.21 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=46.4
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl 180 (519)
...+++||||+.+.. +..++..||.+|+|++++..--.....++..+...+.+.+.+|+|+.+.
T Consensus 108 ~yD~VIiD~p~~~~~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCHHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 357999999987665 6667788999999999863322233445555666788866678999875
No 410
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.90 E-value=0.00088 Score=68.69 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.+++++|++|+|||||||.|++..
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchh
Confidence 34799999999999999999999863
No 411
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.90 E-value=0.0011 Score=66.96 Aligned_cols=75 Identities=27% Similarity=0.455 Sum_probs=56.7
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCc------cccccccEEEEecCceeEEEEcCCCCchh----------HHHHhhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHN------VPEVRGPITIVSGKQRRLQFVECPNDING----------MIDCAKIA 139 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~------v~~~~G~iti~~~~~~rl~fIDtPGdl~s----------mld~ak~A 139 (519)
.|.++|+|.+|||||+..|++.++... ...++| +...+...+++.|.||.+.. ++..++-|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG---~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG---VIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc---eEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 789999999999999999999864322 122233 23356778999999996542 55568889
Q ss_pred CEEEEEEeCCCCCc
Q 010060 140 DLALLLIDGSYGFE 153 (519)
Q Consensus 140 DlVLLVVDas~g~e 153 (519)
.++++|+|+..++.
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 99999999986653
No 412
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.86 E-value=0.0027 Score=65.55 Aligned_cols=96 Identities=26% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc---cccccccEEEE------ecCceeEEEEcCCCC----chhHHHHhh
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN---VPEVRGPITIV------SGKQRRLQFVECPND----INGMIDCAK 137 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---v~~~~G~iti~------~~~~~rl~fIDtPGd----l~smld~ak 137 (519)
.++...|.|+|-||+|||||||++....-+.. ......++|.- ...+..+.++||||- +....++++
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lK 219 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLK 219 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhh
Confidence 45668999999999999999999987632211 11111223332 123456889999994 334455555
Q ss_pred ccCEEEEEEeCCCCCcccHH--HHHHHHHhcCCC
Q 010060 138 IADLALLLIDGSYGFEMETF--EFLNLMQNHGLP 169 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~--e~L~~L~~~GiP 169 (519)
-| ++.+|-|.- +.+++. .+|-++..++-+
T Consensus 220 LA-L~g~Vkd~~--V~~~~~adylL~~lN~~~~~ 250 (335)
T KOG2485|consen 220 LA-LCGLVKDHL--VGEETIADYLLYLLNSHSDF 250 (335)
T ss_pred hh-hcccccccc--cCHHHHHHHHHHHHhccCcc
Confidence 43 333444443 223332 455555555443
No 413
>PRK00098 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.0012 Score=67.98 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...+++++|++|+|||||+|+|++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999999864
No 414
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.83 E-value=0.0098 Score=59.35 Aligned_cols=104 Identities=14% Similarity=0.254 Sum_probs=64.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc----ccCccccccccEEEEec-----CceeEEEEcCCCC---chhHHH-----Hhh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY----TKHNVPEVRGPITIVSG-----KQRRLQFVECPND---INGMID-----CAK 137 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~----Tr~~v~~~~G~iti~~~-----~~~rl~fIDtPGd---l~smld-----~ak 137 (519)
+.|.++|.+|+|||++=..+...+ ++.. .+.|-+..+ .+--+.++||.|. +...+. ...
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rl----g~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRL----GATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhcc----CCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 578999999999998655555433 2211 122223221 2345678999985 222222 367
Q ss_pred ccCEEEEEEeCCCC-Cccc---HHHHHHHHHh-cCCCeEEEEEEccCCCC
Q 010060 138 IADLALLLIDGSYG-FEME---TFEFLNLMQN-HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 138 ~ADlVLLVVDas~g-~e~e---t~e~L~~L~~-~GiP~VI~VlNKlDl~~ 182 (519)
..+++++|+|++.. ++.. ...+|..+.. .---++++.+.|+|++.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 89999999999642 3322 1245555543 23337888899999985
No 415
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.81 E-value=0.003 Score=59.04 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=49.5
Q ss_pred CceeEEEEcCCCCchh-HHHHh--hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 116 KQRRLQFVECPNDING-MIDCA--KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~s-mld~a--k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
....++++|||+.+.. .+..+ ..+|.+|+|+.+...-..+...++..++..+++..-+|+|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 3567999999987654 44444 689999999988654444556788888888999777789998753
No 416
>PRK12288 GTPase RsgA; Reviewed
Probab=96.79 E-value=0.0087 Score=63.26 Aligned_cols=86 Identities=14% Similarity=0.221 Sum_probs=55.2
Q ss_pred hhccCEEEEEEeCCCCCcccHH-HHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 136 AKIADLALLLIDGSYGFEMETF-EFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~-e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
+..+|.+++|.+....+..... .+|..+...++|.+| |+||+|+..... ...+.+.+. .+. ..+.++|++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VI-VlNK~DL~~~~~-~~~~~~~~~-~y~---~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLI-VLNKIDLLDDEG-RAFVNEQLD-IYR---NIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-EEECccCCCcHH-HHHHHHHHH-HHH---hCCCeEEEEeCC
Confidence 6789999999988755554332 455566778899765 899999985432 112222221 111 124689999999
Q ss_pred cCCcCChhHHHHHHHHHH
Q 010060 215 IHGKYSKREIRNLARFIS 232 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~ 232 (519)
++ .++..|...|.
T Consensus 192 tg-----~GideL~~~L~ 204 (347)
T PRK12288 192 TG-----EGLEELEAALT 204 (347)
T ss_pred CC-----cCHHHHHHHHh
Confidence 76 56667776664
No 417
>PHA02518 ParA-like protein; Provisional
Probab=96.75 E-value=0.031 Score=53.47 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=41.4
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHh-----cCCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN-----HGLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~-----~GiP~VI~VlNKlDl 180 (519)
...+++||||+.+.. +..++..||.||+++.++.---.....++..+.. .+.|.+.+|+|+.+.
T Consensus 76 ~~d~viiD~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 457999999987665 6677899999999998863211112233333332 256666566777653
No 418
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.60 E-value=0.008 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.+++|+|+.|+||||||.+|+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 578999999999999999999876
No 419
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.54 E-value=0.006 Score=58.08 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=38.1
Q ss_pred CEEEEEEeCCCCCcccHHHHHHH--HHhcCCCeEEEEEEccCCCCCHHHHHHHHHHH
Q 010060 140 DLALLLIDGSYGFEMETFEFLNL--MQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRL 194 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~e~L~~--L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~L 194 (519)
|+||+|+||..++.....+++.. +...+.|. |+|+||+|+++ ...+.+..+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~-IlVlNK~DL~~-~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKL-VLVLNKIDLVP-KENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCE-EEEEehhhcCC-HHHHHHHHHHH
Confidence 89999999998877766677777 44456775 55899999985 34444444444
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.51 E-value=0.011 Score=54.51 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=37.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAKIADLALLLIDG 148 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDa 148 (519)
++|+|+|+.|+|||||+..|+....+.... ...+......+ .-+|.||. .+......|+++++..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~----v~~ik~~~~g~-~~~d~pG~--Dt~r~~aGA~~~~~~~~~ 67 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYR----VAVIKHTDHGQ-FEIDPPGT--DTWRFKAGADVVLVSSDE 67 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEE-STTS-TTCSTTCH--HHHHHHCT-SEEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCc----eEEEEEccCCC-cccCCCCc--ccccccccceEEEEEcCC
Confidence 379999999999999999999986533211 00011111101 02445552 122224568888887766
No 421
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.38 E-value=0.015 Score=50.78 Aligned_cols=22 Identities=32% Similarity=0.730 Sum_probs=20.4
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
|.+.|+||+|||||++.|....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6799999999999999999985
No 422
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.32 E-value=0.0052 Score=61.37 Aligned_cols=66 Identities=29% Similarity=0.446 Sum_probs=39.1
Q ss_pred ceeEEEEcCCCC---------chhHHHHhhccCE---EEEEEeCCCCCcccHH-----HHHHHHHhcCCCeEEEEEEccC
Q 010060 117 QRRLQFVECPND---------INGMIDCAKIADL---ALLLIDGSYGFEMETF-----EFLNLMQNHGLPRVMGVLTHLD 179 (519)
Q Consensus 117 ~~rl~fIDtPGd---------l~smld~ak~ADl---VLLVVDas~g~e~et~-----e~L~~L~~~GiP~VI~VlNKlD 179 (519)
...+.++||||. +..++..+..-|+ ++-++|+..--++..+ -.|..+...-+|+| -|+.|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphV-NvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHV-NVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccch-hhhhHhH
Confidence 456899999995 3345555444554 5556677543333322 12222234578877 4899999
Q ss_pred CCCC
Q 010060 180 KFKD 183 (519)
Q Consensus 180 l~~~ 183 (519)
+++.
T Consensus 175 l~~~ 178 (290)
T KOG1533|consen 175 LLKK 178 (290)
T ss_pred HHHh
Confidence 9753
No 423
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.30 E-value=0.012 Score=56.39 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.+++|+|++|+|||||+++|+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999864
No 424
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.26 E-value=0.03 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
+..+.|+|+||+|||||+..|......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999998654
No 425
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.05 Score=51.72 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..+..|+|-|+||+|||||+..|...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHH
Confidence 45689999999999999999998865
No 426
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.024 Score=52.00 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=54.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEc-CC-CCchh-HHHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVE-CP-NDING-MIDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fID-tP-Gdl~s-mld~ak~ADlVLLVVDa 148 (519)
.+.-+++|+|++|+|||||++.|.+..... .|.+++. ....+.++. .+ |.... .+..+-..+--++++|-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~--~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD-----EGIVTWG--STVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC-----ceEEEEC--CeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 344689999999999999999999975321 2443331 223455543 22 22222 22222233334555564
Q ss_pred -CCCCcccHH-HHHHHHHhcCCCeEEEEEEc
Q 010060 149 -SYGFEMETF-EFLNLMQNHGLPRVMGVLTH 177 (519)
Q Consensus 149 -s~g~e~et~-e~L~~L~~~GiP~VI~VlNK 177 (519)
..+++..+. .+...++..+ ..+ ++++|
T Consensus 97 P~~~LD~~~~~~l~~~l~~~~-~ti-l~~th 125 (144)
T cd03221 97 PTNHLDLESIEALEEALKEYP-GTV-ILVSH 125 (144)
T ss_pred CccCCCHHHHHHHHHHHHHcC-CEE-EEEEC
Confidence 456666554 4556666554 334 45654
No 427
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.20 E-value=0.021 Score=62.86 Aligned_cols=65 Identities=28% Similarity=0.385 Sum_probs=38.8
Q ss_pred ceeEEEEcCCCCch---------------hHHH-HhhccCEEEEEE-eCCCCCcccH-HHHHHHHHhcCCCeEEEEEEcc
Q 010060 117 QRRLQFVECPNDIN---------------GMID-CAKIADLALLLI-DGSYGFEMET-FEFLNLMQNHGLPRVMGVLTHL 178 (519)
Q Consensus 117 ~~rl~fIDtPGdl~---------------smld-~ak~ADlVLLVV-Das~g~e~et-~e~L~~L~~~GiP~VI~VlNKl 178 (519)
-.+.+++|.||-++ +|-. .......+||+| |++-.-+... -.+...+--+|...| +|++|+
T Consensus 411 LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTI-fVLTKV 489 (980)
T KOG0447|consen 411 LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTI-FVLTKV 489 (980)
T ss_pred cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeE-EEEeec
Confidence 36899999999433 2221 245667777766 5552222111 134444555677655 589999
Q ss_pred CCCC
Q 010060 179 DKFK 182 (519)
Q Consensus 179 Dl~~ 182 (519)
|+..
T Consensus 490 DlAE 493 (980)
T KOG0447|consen 490 DLAE 493 (980)
T ss_pred chhh
Confidence 9974
No 428
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.17 E-value=0.035 Score=55.74 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=40.6
Q ss_pred eeEEEEcCCCCchh--HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHH----hcCCCeEEEEEEccCC
Q 010060 118 RRLQFVECPNDING--MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQ----NHGLPRVMGVLTHLDK 180 (519)
Q Consensus 118 ~rl~fIDtPGdl~s--mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~----~~GiP~VI~VlNKlDl 180 (519)
..+++|||||.+.. +..++..||.+|+++.++..--.....++..+. ..+++...+|+|+.+.
T Consensus 116 yD~vIIDt~g~~~~~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCcccccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56899999987542 566789999999998875321112223444333 2456655457899873
No 429
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.09 E-value=0.037 Score=53.81 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=38.4
Q ss_pred ceeEEEEcCCCCch--hHHHHhh--ccCEEEEEEeCCCCCcc-cHHHHHHHHHhc----CCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDIN--GMIDCAK--IADLALLLIDGSYGFEM-ETFEFLNLMQNH----GLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~--smld~ak--~ADlVLLVVDas~g~e~-et~e~L~~L~~~----GiP~VI~VlNKlDl 180 (519)
...+++|||+|.+. .++..+. .||.+|+++..+. +.. ....++..++.. +.+...+|+|+.+.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 35789999998664 3333334 8999999998752 221 122344444432 44544467899884
No 430
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.02 E-value=0.057 Score=50.95 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=87.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcccccccc----EEEE-ecCceeEEEEcCCCC--chhHHH-HhhccCEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP----ITIV-SGKQRRLQFVECPND--INGMID-CAKIADLA 142 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~----iti~-~~~~~rl~fIDtPGd--l~smld-~ak~ADlV 142 (519)
+.-.+.|+++|-+..|||||+-..++..-........|- -|+. .+-.-.+.++|..|+ +..|+- +++.|-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 445689999999999999998777765211111111110 0111 123456788999986 334554 45778889
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCC--CHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFK--DVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~--~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
||++|-+....... .+..+.++.. -+| + +|-+|.|.+- +.+....+....+.+. . .-.+.+|+.|+-..
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-i-lvGTKyD~fi~lp~e~Q~~I~~qar~YA--k-~mnAsL~F~Sts~s 171 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-I-LVGTKYDLFIDLPPELQETISRQARKYA--K-VMNASLFFCSTSHS 171 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-E-EeccchHhhhcCCHHHHHHHHHHHHHHH--H-HhCCcEEEeecccc
Confidence 99999875433221 1333333322 244 4 4789999752 2222222222222211 1 13578888887533
Q ss_pred CcCChhHHHHHHHHHHhhcCCCCcc
Q 010060 217 GKYSKREIRNLARFISVMKFPPLSW 241 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~r~~~w 241 (519)
-.+..+..++....+ .+.|
T Consensus 172 -----INv~KIFK~vlAklF-nL~~ 190 (205)
T KOG1673|consen 172 -----INVQKIFKIVLAKLF-NLPW 190 (205)
T ss_pred -----ccHHHHHHHHHHHHh-CCce
Confidence 456666666555444 3444
No 431
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.00 E-value=0.19 Score=52.70 Aligned_cols=29 Identities=34% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+....|.|+|-.++||||||..|-+..+
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~ 77 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSET 77 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhcccc
Confidence 45668999999999999999999998753
No 432
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.92 E-value=0.017 Score=70.03 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=59.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccc------cCccccccccEEEEecCceeEEEEcCCCCc--------------hhHHHH
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT------KHNVPEVRGPITIVSGKQRRLQFVECPNDI--------------NGMIDC 135 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T------r~~v~~~~G~iti~~~~~~rl~fIDtPGdl--------------~smld~ 135 (519)
-..|||++|+||||||+.---.+. ...+..+.+.-.+--....+-++|||+|.+ ..+++.
T Consensus 113 WYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred CEEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 567899999999999977622211 111111111111111234578899999832 124444
Q ss_pred h------hccCEEEEEEeCCCCCc--ccH-H-------HHHH-HHHhc--CCCeEEEEEEccCCCC
Q 010060 136 A------KIADLALLLIDGSYGFE--MET-F-------EFLN-LMQNH--GLPRVMGVLTHLDKFK 182 (519)
Q Consensus 136 a------k~ADlVLLVVDas~g~e--~et-~-------e~L~-~L~~~--GiP~VI~VlNKlDl~~ 182 (519)
+ +-.+.||++||+..=.. ++. . .-|. +.... .+|. .+|+||+|++.
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PV-Yvv~Tk~Dll~ 257 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPV-YLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecchhhc
Confidence 4 44799999999974332 111 1 1112 22223 4674 45899999984
No 433
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.0048 Score=65.43 Aligned_cols=111 Identities=24% Similarity=0.258 Sum_probs=76.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc--------------------------cCccccccccEEEEe------cCce
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT--------------------------KHNVPEVRGPITIVS------GKQR 118 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--------------------------r~~v~~~~G~iti~~------~~~~ 118 (519)
+.+.+.|+|+|+..+||||+.-...+..+ +......+| +++.. ..+.
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~-i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG-ITIDIALWKFETSKY 82 (391)
T ss_pred cccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccc-eEEEEEeecccceeE
Confidence 45678999999999999986553222100 000011134 55432 2356
Q ss_pred eEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCC-CCc------ccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 119 RLQFVECPND--IN-GMIDCAKIADLALLLIDGSY-GFE------METFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 119 rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~-g~e------~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
.++++|+||+ +. .|+.....||..+++|.+.. +|+ .++.++..+....|+.++++-+||+|...
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 7889999996 33 48888999999999999843 333 46777777777788888888899999865
No 434
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.89 E-value=0.0077 Score=53.03 Aligned_cols=26 Identities=38% Similarity=0.726 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
...+.|.|++|+|||++++.+.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 35789999999999999999999754
No 435
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.77 E-value=0.034 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|++.|++++||||+.+.|....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 436
>PRK08727 hypothetical protein; Validated
Probab=95.71 E-value=0.11 Score=51.73 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCC---CCchhHHHHhhccCEEEEEEeCCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECP---NDINGMIDCAKIADLALLLIDGSYGF 152 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtP---Gdl~smld~ak~ADlVLLVVDas~g~ 152 (519)
-|.+.|++|+|||.|+.++....... | .+..++.+. +.+...++.+..+| ++++|--..+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~------~---------~~~~y~~~~~~~~~~~~~~~~l~~~d--lLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA------G---------RSSAYLPLQAAAGRLRDALEALEGRS--LVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc------C---------CcEEEEeHHHhhhhHHHHHHHHhcCC--EEEEeCcccc
Confidence 38999999999999999998764221 1 123333322 22445566667777 4566643222
Q ss_pred c---cc---HHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHH
Q 010060 153 E---ME---TFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRN 226 (519)
Q Consensus 153 e---~e---t~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~ 226 (519)
. .+ -+.+++.+...|.+ +|+.-|. ....+......|..|| ....++.+... ..++...
T Consensus 106 ~~~~~~~~~lf~l~n~~~~~~~~-vI~ts~~-----~p~~l~~~~~dL~SRl-----~~~~~~~l~~~-----~~e~~~~ 169 (233)
T PRK08727 106 AGQREDEVALFDFHNRARAAGIT-LLYTARQ-----MPDGLALVLPDLRSRL-----AQCIRIGLPVL-----DDVARAA 169 (233)
T ss_pred cCChHHHHHHHHHHHHHHHcCCe-EEEECCC-----ChhhhhhhhHHHHHHH-----hcCceEEecCC-----CHHHHHH
Confidence 1 11 22455555555655 4433332 2334444445566666 23345555532 4456666
Q ss_pred HHHHHHh
Q 010060 227 LARFISV 233 (519)
Q Consensus 227 LlR~I~~ 233 (519)
+++..+.
T Consensus 170 iL~~~a~ 176 (233)
T PRK08727 170 VLRERAQ 176 (233)
T ss_pred HHHHHHH
Confidence 6655443
No 437
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.008 Score=60.44 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.=+|+|+||+|||||||+|.|.+-.+
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 335899999999999999999999753
No 438
>PRK13695 putative NTPase; Provisional
Probab=95.69 E-value=0.055 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHHhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.|+|+|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999997765
No 439
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.61 E-value=0.1 Score=50.02 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344699999999999999999999975
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.57 E-value=0.0097 Score=51.92 Aligned_cols=23 Identities=43% Similarity=0.797 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|.|+|++||||+.+.|...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 441
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.51 E-value=0.16 Score=50.56 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=40.5
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcc-cHHHHHHHHH------hcCCCeEEEEEEccC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEM-ETFEFLNLMQ------NHGLPRVMGVLTHLD 179 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~-et~e~L~~L~------~~GiP~VI~VlNKlD 179 (519)
...++||||||.+.. +..++..||+||..+.++. +.. .+.+++..+. ..++|.. +|+|.++
T Consensus 83 ~yD~iiID~pp~~~~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~-iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTA-ILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccHHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEecc
Confidence 468999999998776 5567899999998887753 222 2223333222 2467755 5799876
No 442
>PF05729 NACHT: NACHT domain
Probab=95.50 E-value=0.056 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
+++.|.|.+|+|||||+..++.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh
Confidence 47899999999999999999987533
No 443
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.13 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-.+|+|+|+-|+|||||++.|.+.+
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 3688999999999999999999863
No 444
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.44 E-value=0.046 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+|+|+|++|+|||||+++|+...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998753
No 445
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.017 Score=57.23 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+|+||||+|+|||||+++|.+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 33589999999999999999999864
No 446
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.40 E-value=0.023 Score=58.18 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.+|+|+|++|+||||++..|....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998875
No 447
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.38 E-value=0.014 Score=56.52 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+++.+|+|+|++|+|||||++.|.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998653
No 448
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.35 E-value=0.11 Score=45.09 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
....|.|+|++|+|||+|++.+.....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 446789999999999999999998764
No 449
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.31 E-value=0.098 Score=52.49 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=39.3
Q ss_pred eeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcc-cHHHHHHHHHh----cCCCeEEEEEEccCC
Q 010060 118 RRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEM-ETFEFLNLMQN----HGLPRVMGVLTHLDK 180 (519)
Q Consensus 118 ~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~-et~e~L~~L~~----~GiP~VI~VlNKlDl 180 (519)
..+++|||||.+. .+...+..||.+|+++..+. +.. ....++..+.. .+++...+|+|+.+.
T Consensus 116 yD~ViID~~~~~~~~~~~~~l~aAD~vlip~~~~~-~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 116 YDVILFDVLGDVVCGGFATPLQYADYALVVAANDF-DALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred CCEEEEecCCccccCccccchhhcCEEEEEecCch-hHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 5789999998764 34456788999999876642 221 22244444432 356655567898764
No 450
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.30 E-value=0.018 Score=55.77 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..|.+|+|.|++|+|||||++.|.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999875
No 451
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.072 Score=54.60 Aligned_cols=135 Identities=17% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc---cc--Ccccccc---ccEEEE-ecCceeEEEEcCCC--C-------chh
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY---TK--HNVPEVR---GPITIV-SGKQRRLQFVECPN--D-------ING 131 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr--~~v~~~~---G~iti~-~~~~~rl~fIDtPG--d-------l~s 131 (519)
..+-..+|.-||-+|.||||||..|.... +. +....+. ..+.+- +.-+-.++++||.| | +..
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~ 117 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKP 117 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccch
Confidence 35667899999999999999999999862 11 1111110 011111 22356789999987 1 111
Q ss_pred ---HHHH------------------h--hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHH
Q 010060 132 ---MIDC------------------A--KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKL 187 (519)
Q Consensus 132 ---mld~------------------a--k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l 187 (519)
.+|+ + ....++|+.|..+ +++..-..-.+.-|. ..-.||.|+-|.|.+. ...+
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld--skVNIIPvIAKaDtis-K~eL 194 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD--SKVNIIPVIAKADTIS-KEEL 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh--hhhhhHHHHHHhhhhh-HHHH
Confidence 1221 1 3456788888775 333332222333332 2234677889999885 3456
Q ss_pred HHHHHHHHHhhhhhccCCceEEE
Q 010060 188 RKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 188 ~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
...+..+...+. ..+..|+.
T Consensus 195 ~~FK~kimsEL~---sngv~IYq 214 (406)
T KOG3859|consen 195 KRFKIKIMSELV---SNGVQIYQ 214 (406)
T ss_pred HHHHHHHHHHHH---hcCceeee
Confidence 666655544332 24556654
No 452
>PRK01889 GTPase RsgA; Reviewed
Probab=95.27 E-value=0.021 Score=60.54 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+...++|+|.+|+|||||+|.|++..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 34689999999999999999999864
No 453
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.24 E-value=0.014 Score=52.22 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=20.8
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|.++|+||+|||||++.|....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999764
No 454
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.21 E-value=0.28 Score=49.30 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+..|.+.|+||+|||||+..+....
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.20 E-value=0.14 Score=45.81 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=30.1
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchh
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDING 131 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~s 131 (519)
+++|.|+||+|||||+..|+..... ....+.++++...+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---------------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---------------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---------------cCCEEEEEECCcchHH
Confidence 3689999999999999999887533 1235677777665443
No 456
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.20 E-value=0.051 Score=42.89 Aligned_cols=45 Identities=31% Similarity=0.519 Sum_probs=26.3
Q ss_pred HHhhccCEEEEEEeCC--CCCcccHH-HHHHHHHhc--CCCeEEEEEEccC
Q 010060 134 DCAKIADLALLLIDGS--YGFEMETF-EFLNLMQNH--GLPRVMGVLTHLD 179 (519)
Q Consensus 134 d~ak~ADlVLLVVDas--~g~e~et~-e~L~~L~~~--GiP~VI~VlNKlD 179 (519)
.....+++|||++|.+ .|+..+.+ .++..++.. +.| ++.|+||+|
T Consensus 9 AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp GGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 3456789999999997 45544433 555566553 566 666999998
No 457
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.16 E-value=0.11 Score=49.32 Aligned_cols=23 Identities=39% Similarity=0.811 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|.|-|.||+|||||++.++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 458
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.11 E-value=0.015 Score=51.79 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|++|+|||||++.|.+...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 345899999999999999999999853
No 459
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.09 E-value=0.049 Score=50.95 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.9
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|++|+|||||+.+|+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999874
No 460
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.08 E-value=0.14 Score=51.37 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=38.2
Q ss_pred eeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCccc-HHHHHHHHH----hcCCCeEEEEEEccC
Q 010060 118 RRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEME-TFEFLNLMQ----NHGLPRVMGVLTHLD 179 (519)
Q Consensus 118 ~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~e-t~e~L~~L~----~~GiP~VI~VlNKlD 179 (519)
..+++|||||.+. .+...+..||.+|+++.++. +... ...++..+. ..+++..-+|+|+.+
T Consensus 118 yD~viIDt~g~~~~~~~~~~l~~AD~viip~~~~~-~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 118 YDVILFDVLGDVVCGGFAAPLQYADYALIVTANDF-DSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred CCEEEEecCCCcccCcccchhhhCcEEEEEecCch-hhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 5689999998754 24556788999999987742 2222 223333332 345554445789865
No 461
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=95.02 E-value=0.46 Score=48.47 Aligned_cols=66 Identities=9% Similarity=0.151 Sum_probs=48.1
Q ss_pred eeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEE--EEEEccCCCCC
Q 010060 118 RRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM--GVLTHLDKFKD 183 (519)
Q Consensus 118 ~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI--~VlNKlDl~~~ 183 (519)
..++|+|||+-+.. ++..+..+|.+|+|......--.....++.++...|.+... +|+|+++...+
T Consensus 113 ~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e 181 (262)
T COG0455 113 YDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKE 181 (262)
T ss_pred CCEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecccccc
Confidence 36899999876554 77777778999999876532223456788888888888544 68999985443
No 462
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.00 E-value=0.038 Score=55.09 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.|+++|+||+||||+.+.|.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987653
No 463
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.00 E-value=0.28 Score=48.75 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+.+.|++|+|||+|+.++....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999988764
No 464
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.99 E-value=0.073 Score=56.84 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=46.7
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHH-HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLM-QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L-~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
+...+..+|+||-|+||..+..--..+.-.++ +++|-.+.|+||||+|+++ .+.+.+....|+..|
T Consensus 140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVP-REVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCC-HHHHHHHHHHHHhhC
Confidence 55677899999999999987654444444433 5678667778999999995 456666655555433
No 465
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.027 Score=63.83 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=59.4
Q ss_pred HHhhcCCccCCcCCCCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEe-cCceeEEEE-cCCCCchhHHH
Q 010060 57 QRRLHIPTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS-GKQRRLQFV-ECPNDINGMID 134 (519)
Q Consensus 57 ~Kr~~v~~~~R~~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~-~~~~rl~fI-DtPGdl~smld 134 (519)
++-+.-..+.+..+.....++|++||||+||||+.++|...-.|.-....-|+++-++ .++.|=++| -.||-+..+|.
T Consensus 421 eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK 500 (906)
T KOG2004|consen 421 ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLK 500 (906)
T ss_pred HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHH
Confidence 3444445555655566668999999999999999999988754432222224455442 345555666 45888878788
Q ss_pred HhhccCEEEEE
Q 010060 135 CAKIADLALLL 145 (519)
Q Consensus 135 ~ak~ADlVLLV 145 (519)
-++.+.=++|+
T Consensus 501 ~v~t~NPliLi 511 (906)
T KOG2004|consen 501 KVKTENPLILI 511 (906)
T ss_pred hhCCCCceEEe
Confidence 77777776664
No 466
>PRK06893 DNA replication initiation factor; Validated
Probab=94.96 E-value=0.15 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+.+.|+||+|||+|+.++....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999875
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.95 E-value=0.021 Score=57.98 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.-+++|+||.|||||||+++|.+.-
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 445799999999999999999999963
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.93 E-value=0.025 Score=55.77 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.++|.+|+|.|++|+|||||++.|.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46789999999999999999999998753
No 469
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.90 E-value=0.29 Score=48.81 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=23.0
Q ss_pred ceeEEEEcCCCCch--hHHH--HhhccCEEEEEEeCC
Q 010060 117 QRRLQFVECPNDIN--GMID--CAKIADLALLLIDGS 149 (519)
Q Consensus 117 ~~rl~fIDtPGdl~--smld--~ak~ADlVLLVVDas 149 (519)
...+++|||||.+. .+.. ....||.+|+++.++
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~ 152 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE 152 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCc
Confidence 35789999998653 2221 223699999999875
No 470
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.88 E-value=0.064 Score=59.73 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=52.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchhHHHHhh--ccCEEEEEEeC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAK--IADLALLLIDG 148 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~smld~ak--~ADlVLLVVDa 148 (519)
..+|.+|+++|+||+||||+.+.+.... | +.+++. |.-|....++..+. .+..-=+|||+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~---------g-~~~vn~--------D~lg~~~~~~~~a~~~L~~G~sVVIDa 427 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA---------G-YKHVNA--------DTLGSTQNCLTACERALDQGKRCAIDN 427 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc---------C-CeEECc--------HHHHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 4678899999999999999999988753 1 111111 11122222332221 11112256799
Q ss_pred CCCCcccHHHHHHHHHhcCCCeEEE
Q 010060 149 SYGFEMETFEFLNLMQNHGLPRVMG 173 (519)
Q Consensus 149 s~g~e~et~e~L~~L~~~GiP~VI~ 173 (519)
+..-..+-..++.+++.+|+|..++
T Consensus 428 Tn~~~~~R~~~i~lAk~~gv~v~~i 452 (526)
T TIGR01663 428 TNPDAASRAKFLQCARAAGIPCRCF 452 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 8755555557888999999986543
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.87 E-value=0.076 Score=53.26 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=63.1
Q ss_pred CCCCeEEEEECCCC---CChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchhH-HHHhhccCEEEEEE
Q 010060 71 EPPPFVVVVQGPPQ---VGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGM-IDCAKIADLALLLI 146 (519)
Q Consensus 71 ~~~p~~VaVVG~pn---vGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~sm-ld~ak~ADlVLLVV 146 (519)
..+...+.++|.+. .|=-.-+|+|++..-++... ....++++||-.-+..+ ...+..+|++|.|+
T Consensus 95 e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~-----------~~~e~VivDtEAGiEHfgRg~~~~vD~vivVv 163 (255)
T COG3640 95 ENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLIL-----------NRYEVVIVDTEAGIEHFGRGTIEGVDLVIVVV 163 (255)
T ss_pred hcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhc-----------ccCcEEEEecccchhhhccccccCCCEEEEEe
Confidence 45568899999873 33223344444443222211 23579999996433332 23457899999999
Q ss_pred eCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 147 DGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 147 Das~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
|++..--.-...+-.+....|+.++.+|+||+|..
T Consensus 164 DpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 164 DPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 99853222223455566677988899999999965
No 472
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.86 E-value=0.027 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+.|+|+||+|+|||||++.|+...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 467899999999999999999999864
No 473
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.81 E-value=0.033 Score=55.28 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
++..+.|++||+|||||||+++|.+-.+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4557899999999999999999988653
No 474
>PRK08233 hypothetical protein; Provisional
Probab=94.77 E-value=0.028 Score=52.39 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|+|.|+||+|||||.+.|....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999999875
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.72 E-value=0.029 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+.+..|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 356789999999999999999999864
No 476
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.021 Score=62.08 Aligned_cols=133 Identities=17% Similarity=0.341 Sum_probs=76.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc--------------cC-----------ccccccc-cEEEE-----------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT--------------KH-----------NVPEVRG-PITIV----------- 113 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--------------r~-----------~v~~~~G-~iti~----------- 113 (519)
...|.+|++||-.||||||-+..|..--. |. .+....| .|.++
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 45889999999999999998777765310 00 0000001 00010
Q ss_pred --------ecCceeEEEEcCCCCchh----HHHH-----hhccCEEEEEEeCCCCCcc--cHHHHHHHHHhcCCCeEE--
Q 010060 114 --------SGKQRRLQFVECPNDING----MIDC-----AKIADLALLLIDGSYGFEM--ETFEFLNLMQNHGLPRVM-- 172 (519)
Q Consensus 114 --------~~~~~rl~fIDtPGdl~s----mld~-----ak~ADlVLLVVDas~g~e~--et~e~L~~L~~~GiP~VI-- 172 (519)
...+..+++|||.|.++. |-.. +...|.||+|-.|--|-+. +..+|=..|..+..|+.|
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 113567999999995331 2211 3457999999887655443 233566666666544322
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 173 GVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 173 ~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
++++|.|.+.+ .+-.... .-+..+.||+++-
T Consensus 535 ~~ltk~dtv~d--~vg~~~~-------m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 535 ILLTKFDTVDD--KVGAAVS-------MVYITGKPILFVG 565 (587)
T ss_pred EEEEeccchhh--HHHHHhh-------heeecCCceEEEe
Confidence 36999998852 2211111 1223677887765
No 477
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.65 E-value=0.026 Score=56.22 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-.|+|+||+|+|||||+|.|-+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999988764
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.63 E-value=0.031 Score=53.62 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..+|+|+|++|+|||||++.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55789999999999999999999875
No 479
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.63 E-value=0.22 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
..|+|+|++|+||||++++|++...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999998753
No 480
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.61 E-value=0.19 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+.+.|++|+|||.|+.+|....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999999999875
No 481
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.60 E-value=0.19 Score=51.94 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=50.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcC-CCC-chhHHHHhhc---cCEEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVEC-PND-INGMIDCAKI---ADLALLLI 146 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDt-PGd-l~smld~ak~---ADlVLLVV 146 (519)
.+..+|+|.|++|+||||+++.|-.. | +.++|- |-. +..+++.+.. .+-+.+++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~~----------g-----------~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALEDL----------G-----------YYCVDNLPPSLLPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHc----------C-----------CeEECCcCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 34568999999999999999999411 2 233343 222 3445555543 35678888
Q ss_pred eCCCC-CcccHHHHHHHHHhcCCCeEE
Q 010060 147 DGSYG-FEMETFEFLNLMQNHGLPRVM 172 (519)
Q Consensus 147 Das~g-~e~et~e~L~~L~~~GiP~VI 172 (519)
|.... +..+..+.+..|+..|.+..+
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~g~~~~i 89 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRERGIDVRV 89 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHcCCcEEE
Confidence 98632 333445777778877877433
No 482
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.57 E-value=0.045 Score=53.23 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
++.-+|+|+|++|+|||||+|-+.+-.+.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 44569999999999999999999997543
No 483
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.55 E-value=0.032 Score=57.58 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|.+|+|.|++|||||||++.|.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999998887654
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.49 E-value=0.11 Score=49.37 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=44.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEE----------EecCceeEEEEcCCCCchhHHHH-hhccCEEEE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI----------VSGKQRRLQFVECPNDINGMIDC-AKIADLALL 144 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti----------~~~~~~rl~fIDtPGdl~smld~-ak~ADlVLL 144 (519)
+|.|+|+|++||||+...|........+.--.+...- .......+..+++|.++...+.. ....+ ++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~--~V 80 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGR--CV 80 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCC--EE
Confidence 6899999999999999999876422111100010000 00113457889999988887655 33344 56
Q ss_pred EEeCC
Q 010060 145 LIDGS 149 (519)
Q Consensus 145 VVDas 149 (519)
|||+-
T Consensus 81 lID~L 85 (170)
T PRK05800 81 LVDCL 85 (170)
T ss_pred EehhH
Confidence 77874
No 485
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.032 Score=63.32 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=43.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEe-cCceeEEEE-cCCCCchhHHHHhhccCEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVS-GKQRRLQFV-ECPNDINGMIDCAKIADLAL 143 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~-~~~~rl~fI-DtPGdl~smld~ak~ADlVL 143 (519)
...++|+|||||||||||.+++.....|.-+.-..|+++-.+ -.++|=|+| -.||-+..-+.-++...=++
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~ 421 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVF 421 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeE
Confidence 336899999999999999999999866543332234333322 124455555 45776555344444444333
No 486
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.031 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.9
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+++|+|++|+|||||++.|.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999975
No 487
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.46 E-value=0.035 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999975
No 488
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.45 E-value=0.13 Score=51.96 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCC----CchhHHHHhh--ccCEE
Q 010060 69 YGEPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPN----DINGMIDCAK--IADLA 142 (519)
Q Consensus 69 ~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPG----dl~smld~ak--~ADlV 142 (519)
....|..+|.+-|..|+|||||+++|+..+... .+.+|+.+. ++..+++.+. ..-+|
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~~y~~~-----------------GLRlIev~k~~L~~l~~l~~~l~~~~~kFI 109 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-----------------GLRLIEVSKEDLGDLPELLDLLRDRPYKFI 109 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-----------------CceEEEECHHHhccHHHHHHHHhcCCCCEE
Confidence 334567899999999999999999999987432 144555443 3555666554 34567
Q ss_pred EEEEeCCCCCcccHHHHHHHHHhc---CCC-eEEEEEE
Q 010060 143 LLLIDGSYGFEMETFEFLNLMQNH---GLP-RVMGVLT 176 (519)
Q Consensus 143 LLVVDas~g~e~et~e~L~~L~~~---GiP-~VI~VlN 176 (519)
||+=|-++.-.+..+..|..+-.- +.| .|++..|
T Consensus 110 lf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 110 LFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred EEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 776666654444555555555443 335 5554443
No 489
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.45 E-value=0.18 Score=56.15 Aligned_cols=105 Identities=27% Similarity=0.380 Sum_probs=62.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc-cccCccccccccEEEE----ecCceeEEEEcCCCCchhHH-HHhhccCEEEEEEe
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH-YTKHNVPEVRGPITIV----SGKQRRLQFVECPNDINGMI-DCAKIADLALLLID 147 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~-~Tr~~v~~~~G~iti~----~~~~~rl~fIDtPGdl~sml-d~ak~ADlVLLVVD 147 (519)
-...-|+|+.++|||.|++++++. +++.........+++. .+....+++-|.+-.-...+ ..-..||+++|+.|
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke~~cDv~~~~YD 504 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKEAACDVACLVYD 504 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCccceeeeEEEecc
Confidence 367789999999999999999995 2222222211222221 23445566666653211111 11167999999999
Q ss_pred CCCCCcccHHHHHHHHHh-----cCCCeEEEEEEccCCCC
Q 010060 148 GSYGFEMETFEFLNLMQN-----HGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 148 as~g~e~et~e~L~~L~~-----~GiP~VI~VlNKlDl~~ 182 (519)
.+.+ ..++++..+.. ..+| ++.|.+|+|+-.
T Consensus 505 sS~p---~sf~~~a~v~~~~~~~~~~P-c~~va~K~dlDe 540 (625)
T KOG1707|consen 505 SSNP---RSFEYLAEVYNKYFDLYKIP-CLMVATKADLDE 540 (625)
T ss_pred cCCc---hHHHHHHHHHHHhhhccCCc-eEEEeeccccch
Confidence 9832 33433333322 4567 445899999864
No 490
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.44 E-value=0.11 Score=52.35 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=53.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE------------ecCceeEEEEcCCCCchh---HHHHhhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV------------SGKQRRLQFVECPNDING---MIDCAKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~------------~~~~~rl~fIDtPGdl~s---mld~ak~ 138 (519)
.-.++|+|.+|+|||||.+.|.+-.... .|.|++. ....-+++|=|..+.++. +-+.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~-----~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPS-----SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCC-----CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 3589999999999999999999974221 1222221 123346777788887664 2233222
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEE
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM 172 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI 172 (519)
+=.+ .++.....++..+|..-|+|.-+
T Consensus 108 pl~~-------~~~~~~~~~i~~~L~~VgL~~~~ 134 (252)
T COG1124 108 PLRP-------HGLSKSQQRIAELLDQVGLPPSF 134 (252)
T ss_pred hhcc-------CCccHHHHHHHHHHHHcCCCHHH
Confidence 1000 45555555677888888988543
No 491
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=94.43 E-value=0.12 Score=56.33 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
++|+|+|+.|+||||||.+|+..
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~ 24 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAA 24 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHH
Confidence 48999999999999999999986
No 492
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.43 E-value=0.17 Score=58.58 Aligned_cols=64 Identities=14% Similarity=-0.077 Sum_probs=45.1
Q ss_pred ceeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl 180 (519)
...+++||||..+. .+.-.+..+|.+|+|+.....-.....+.+..++..+.+.+-+|+|++|.
T Consensus 655 ~yD~IiID~pp~~~~~d~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDMRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred hCCEEEEcCCCcchhHHHHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 35689999998654 34455678999999987643333344577777777777766578998874
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.39 E-value=0.037 Score=52.94 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
.+.-+|+|+|+.|+|||||++.|+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4557999999999999999999864
No 494
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.36 E-value=0.037 Score=53.69 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 344689999999999999999999975
No 495
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.34 E-value=0.26 Score=52.83 Aligned_cols=28 Identities=36% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...+.+|+|||+.++|||||..-|++..
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~ 97 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKL 97 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHH
Confidence 4566899999999999999988777764
No 496
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.34 E-value=0.035 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=21.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+|+|+||+|||||++.|...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999653
No 497
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.038 Score=54.36 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344689999999999999999999975
No 498
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.28 E-value=0.038 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+|+|++|+|||||++.|....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998864
No 499
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.27 E-value=0.039 Score=53.50 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344689999999999999999999975
No 500
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.26 E-value=0.04 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999975
Done!